Psyllid ID: psy6638

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MFSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFLFCACNT
Secondary Structure (PSIPRED)
cccEEEEEEEEEccccEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEEEcccccccEEEEEEcccEEEEEEEccccccccccEEEEEEEEccccccccEEEEEEcccEEEEEEccccccEEEEEEEEEEcccccccccccEEEEccccccccccccEEEccccccccEEEEEEEccccccccccccEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEccccccccEEEEEEEEcccccccccccEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEcccccEEEEEcccccccEEEEEEEEEcccccccccEEEEEccccccccEEEEEccccEEEEEEcccccccccEEEEEEEEEccccccccEEEEEEEcccccEEEEEccccccEEEEEEEEEEcccccccccEEEEEccccccccccccEEEEEEEEcccEEEEEEcccccccccccEEEEEEEEEEccccccccEEEEEEEEEEcccccEEEEEEccccccEEEEEEEEEEccccccccccEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MFSRYTIREQVLEDGMISELGIANvlrqdsgtlsclatnyhgtAEMTIQLLVqetpeapkniriteessrslqiswtapysgntAITQYIIQYKsseemwptqplkiivpgsqtsatlqpllpatQYQVRLLaenplgmsetgAELQAStleeapngaprevtsdpgvvdptellikwkappreswngVLLGYDVGyqissgsslalssytlksveldnqyegelripgltpytkYAIVVRGynsvgkgpfsepfiartnegDFLFLFCACNT
Flexible Loop (DISEMBL)
mfsrytirEQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRIteessrslqiswtapysgntAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLeeapngaprevtsdpgvvdPTELLikwkappresWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYegelripgltpyTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFLFCACNT
Low Complexity Region (SEG)
MFSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQIssgsslalssYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFLFCACNT
Disordered region (IsUnstruct)
*****TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ******************LQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA***********************************VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFLFCAC**
Disordered Region (DISOPRED)
*FSRYTI*E*******ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG***********************************LLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFL*CA***
Disordered Region (DISEMBL)
MFSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFLFCACNT
Disordered Region (DISPRO)
***RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFLFCACNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
O60469	2012	Down syndrome cell adhesi	yes	N/A	0.923	0.125	0.324	4e-33
Q8VHZ8	2013	Down syndrome cell adhesi	yes	N/A	0.923	0.125	0.320	2e-32
Q9ERC8	2013	Down syndrome cell adhesi	yes	N/A	0.923	0.125	0.320	2e-32
Q4VA61	2053	Down syndrome cell adhesi	no	N/A	0.915	0.121	0.353	1e-31
Q8TD84	2053	Down syndrome cell adhesi	no	N/A	0.915	0.121	0.353	1e-31
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.926	0.121	0.353	3e-31
Q58EX2	2172	Protein sidekick-2 OS=Hom	no	N/A	0.857	0.107	0.281	5e-20
Q8AV58	2169	Protein sidekick-1 OS=Gal	no	N/A	0.890	0.112	0.299	1e-19
Q6V4S5	2176	Protein sidekick-2 OS=Mus	no	N/A	0.857	0.107	0.269	4e-18
Q7Z5N4	2213	Protein sidekick-1 OS=Hom	no	N/A	0.897	0.110	0.301	5e-18

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score =  142 bits (357), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 140/262 (53%), Gaps = 10/262 (3%)

Query: 2    FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
             +RY +  + + + +IS L I   +R+DSG  SC A N +G     IQL VQE P+ P+ 
Sbjct: 832  MARYLVSTKEVGEEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPE- 890

Query: 62   IRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
            I I +  +R++ + WT  + GN+ IT Y I+ K+  + W +      V     SAT+  +
Sbjct: 891  IEIKDVKARTITLRWTMGFDGNSPITGYDIECKNKSDSWDSAQRTKDVSPQLNSATIIDI 950

Query: 122  LPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP 181
             P++ Y +R+ A+N +G SE   EL  +  E AP+G P+EV  +P  +    + + WKAP
Sbjct: 951  HPSSTYSIRMYAKNRIGKSEPSNELTITADEAAPDGPPQEVHLEP--ISSQSIRVTWKAP 1008

Query: 182  PRESWNGVLLGYDVGY-QISSGSSLALSSYTLKSVELDNQYEGEL-RIPGLTPYTKYAIV 239
             +   NG++ GY +GY + S+G      ++    + +D   + E+  +  L  +T+Y +V
Sbjct: 1009 KKHLQNGIIRGYQIGYREYSTG-----GNFQFNIISVDTSGDSEVYTLDNLNKFTQYGLV 1063

Query: 240  VRGYNSVGKGPFSEPFIARTNE 261
            V+  N  G GP S+  I  T E
Sbjct: 1064 VQACNRAGTGPSSQEIITTTLE 1085

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.
Homo sapiens (taxid: 9606)

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 139/262 (53%), Gaps = 10/262 (3%)

Query: 2    FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
             +RY +  + + + +IS L I   +R+DSG  SC A N +G     IQL VQE P+ P+ 
Sbjct: 832  MARYLVSTKEVGEEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPE- 890

Query: 62   IRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
            I I +  +R++ + WT  + GN+ IT Y I+ K+  + W +      V     SAT+  +
Sbjct: 891  IEIKDVKARTITLRWTMGFDGNSPITGYDIECKNKSDSWDSAQRTKDVSPQLNSATIIDI 950

Query: 122  LPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP 181
             P++ Y +R+ A+N +G SE   E+  +  E AP+G P+EV  +P       + + WKAP
Sbjct: 951  HPSSTYSIRMYAKNRIGKSEPSNEITITADEAAPDGPPQEVHLEP--TSSQSIRVTWKAP 1008

Query: 182  PRESWNGVLLGYDVGY-QISSGSSLALSSYTLKSVELDNQYEGEL-RIPGLTPYTKYAIV 239
             +   NG++ GY +GY + S+G      ++    + +D   + E+  +  L  +T+Y +V
Sbjct: 1009 KKHLQNGIIRGYQIGYREYSTG-----GNFQFNIISIDTTGDSEVYTLDNLNKFTQYGLV 1063

Query: 240  VRGYNSVGKGPFSEPFIARTNE 261
            V+  N  G GP S+  I  T E
Sbjct: 1064 VQACNRAGTGPSSQEIITTTLE 1085

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.

Rattus norvegicus (taxid: 10116)

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 139/262 (53%), Gaps = 10/262 (3%)

Query: 2    FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
             +RY +  + + + +IS L I   +R+DSG  SC A N +G     IQL VQE P+ P+ 
Sbjct: 832  MARYLVSTKEVGEEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPE- 890

Query: 62   IRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
            I I +  +R++ + WT  + GN+ IT Y I+ K+  + W +      V     SAT+  +
Sbjct: 891  IEIKDVKARTITLRWTMGFDGNSPITGYDIECKNKSDSWDSAQRTKDVSPQLNSATIIDI 950

Query: 122  LPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP 181
             P++ Y +R+ A+N +G SE   E+  +  E AP+G P+EV  +P       + + WKAP
Sbjct: 951  HPSSTYSIRMYAKNRIGKSEPSNEITITADEAAPDGPPQEVHLEP--TSSQSIRVTWKAP 1008

Query: 182  PRESWNGVLLGYDVGY-QISSGSSLALSSYTLKSVELDNQYEGEL-RIPGLTPYTKYAIV 239
             +   NG++ GY +GY + S+G      ++    + +D   + E+  +  L  +T+Y +V
Sbjct: 1009 KKHLQNGIIRGYQIGYREYSTG-----GNFQFNIISIDTTGDSEVYTLDNLNKFTQYGLV 1063

Query: 240  VRGYNSVGKGPFSEPFIARTNE 261
            V+  N  G GP S+  I  T E
Sbjct: 1064 VQACNRAGTGPSSQEIITTTLE 1085

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Mus musculus (taxid: 10090)

>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus musculus GN=Dscaml1 PE=1 SV=2

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 135/260 (51%), Gaps = 10/260 (3%)

Query: 4    RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
            RY I  +   D ++S L +    R DS   SC A N +G     IQL VQE P+ P+ + 
Sbjct: 836  RYAIATKDNGDEVVSTLKLKPADRGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPPE-LE 894

Query: 64   ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP-TQPLKIIVPGSQTSATLQPLL 122
            I E  +RS+ + WT  + GN+ IT + I+YK+  + W   Q  + I P +   A +  L 
Sbjct: 895  IREVKARSMNLRWTQRFDGNSIITGFDIEYKNKSDSWDFKQSTRNISP-TINQANIVDLH 953

Query: 123  PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP 182
            PA+ Y +R+ + N +G SE   EL  ST E AP+G P +VT  P  V    + + WKAP 
Sbjct: 954  PASVYSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPK 1011

Query: 183  RESWNGVLLGYDVGYQISS-GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVR 241
            +E  NGV+ GY +GY+ +S GS+   S   +K+      Y     +  L  + +Y +VV+
Sbjct: 1012 KELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYT----LDNLKKFAQYGVVVQ 1067

Query: 242  GYNSVGKGPFSEPFIARTNE 261
             +N  G GP S    A T E
Sbjct: 1068 AFNRAGTGPSSSEINATTLE 1087

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Mus musculus (taxid: 10090)

>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens GN=DSCAML1 PE=1 SV=2

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 135/260 (51%), Gaps = 10/260 (3%)

Query: 4    RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
            RY I  +   D ++S L +    R DS   SC A N +G     IQL VQE P+ P+ + 
Sbjct: 836  RYAIATKDNGDEVVSTLKLKPADRGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPPE-LE 894

Query: 64   ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP-TQPLKIIVPGSQTSATLQPLL 122
            I E  +RS+ + WT  + GN+ IT + I+YK+  + W   Q  + I P +   A +  L 
Sbjct: 895  IREVKARSMNLRWTQRFDGNSIITGFDIEYKNKSDSWDFKQSTRNISP-TINQANIVDLH 953

Query: 123  PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP 182
            PA+ Y +R+ + N +G SE   EL  ST E AP+G P +VT  P  V    + + WKAP 
Sbjct: 954  PASVYSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPK 1011

Query: 183  RESWNGVLLGYDVGYQISS-GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVR 241
            +E  NGV+ GY +GY+ +S GS+   S   +K+      Y     +  L  + +Y +VV+
Sbjct: 1012 KELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYT----LDNLKKFAQYGVVVQ 1067

Query: 242  GYNSVGKGPFSEPFIARTNE 261
             +N  G GP S    A T E
Sbjct: 1068 AFNRAGTGPSSSEINATTLE 1087

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Homo sapiens (taxid: 9606)

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 142/260 (54%), Gaps = 7/260 (2%)

Query: 4    RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
            + +++++   DG+ +EL I  V   DSG   C A+N +G  +  +QL VQE P  P  + 
Sbjct: 853  KISVKQEATPDGVSAELQIRTVDATDSGPYFCRASNLYGNDQQLVQLQVQEPPLPPSVLE 912

Query: 64   ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG-SQTSATLQPLL 122
                SSRS+ I W     G   +T+YI++++ ++ ++  Q  +I V      +A ++ L 
Sbjct: 913  AAMISSRSVNIKWQPKTLGTGDVTKYIVEFREADPLFVDQWQQIEVKDPPHFNAMIENLK 972

Query: 123  PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP 182
            PAT+Y  R++AE   G S    EL   T  + P G P  +++ P  +  TELLI W AP 
Sbjct: 973  PATRYAFRVIAEGSAGRSAPSQELIVRTEPQRPAGPPLSLSARP--LSSTELLISWVAPL 1030

Query: 183  RESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELD-NQYEGELRIPGLTPYTKYAIVVR 241
             E  +G + GY+VGY++SS  + A   Y   SV  D +   GEL + GL  + +Y +VV+
Sbjct: 1031 PELRHGDIQGYNVGYKLSSSGNTA---YNFTSVSGDGDGGNGELLLSGLAKFARYTVVVQ 1087

Query: 242  GYNSVGKGPFSEPFIARTNE 261
             +N VG GP SEP  A+T E
Sbjct: 1088 AFNQVGPGPLSEPTAAQTME 1107

Cell adhesion molecule.

Drosophila melanogaster (taxid: 7227)

>sp|Q58EX2|SDK2_HUMAN Protein sidekick-2 OS=Homo sapiens GN=SDK2 PE=1 SV=3

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 11/245 (4%)

Query: 20  LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN--IRITEESSRSLQISWT 77
           L I+     D GT +C   +  G    +  L V++ P AP++    ++    R++ ++WT
Sbjct: 554 LHISQTWSGDIGTYTCRVISAGGNDSRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWT 613

Query: 78  APYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL 137
            P+ GN+ + +YI++   +   W T  L  + P + TS T++ L+PA  YQ RL A N +
Sbjct: 614 KPFDGNSPLIRYILEMSENNAPW-TVLLASVDPKA-TSVTVKGLVPARSYQFRLCAVNDV 671

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G  +   + +  +L E P  AP +     G  + + ++I+W+ PP    NG+L GY + Y
Sbjct: 672 GKGQFSKDTERVSLPEEPPTAPPQNVIASGRTNQS-IMIQWQPPPESHQNGILKGYIIRY 730

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
            + +G  +      +   +++N     L +  L  +T Y I V  YNS G G +S     
Sbjct: 731 CL-AGLPVGYQFKNITDADVNN-----LLLEDLIIWTNYEIEVAAYNSAGLGVYSSKVTE 784

Query: 258 RTNEG 262
            T +G
Sbjct: 785 WTLQG 789

Cell adhesion protein that guides axonal terminals to specific synapses in developing neurons.

Homo sapiens (taxid: 9606)

>sp|Q8AV58|SDK1_CHICK Protein sidekick-1 OS=Gallus gallus GN=SDK1 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 120/257 (46%), Gaps = 14/257 (5%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEE 67
           R  V +DG    L I+     D G  +C   ++ G      +L V E P +P+N+  T  
Sbjct: 575 RITVEKDGT---LLISQTWSGDIGDYTCEVISFGGNDSRMARLEVIELPHSPQNLLATLN 631

Query: 68  SS--RSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPAT 125
           SS  RS+ +SW  P+ GN+ +  Y+++   +   W    L  + P   TS T+  L PA 
Sbjct: 632 SSYSRSVVLSWVRPFDGNSPVLYYMVELSENNSPWKVH-LSNLDP-KMTSVTVSGLTPAR 689

Query: 126 QYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRES 185
            YQ R+ A N +G  +  +E     L E P  AP +     G  + + ++++W+ PP   
Sbjct: 690 TYQFRVCAVNQVGKGQYSSETSRLMLPEEPPSAPPKNIVASGRTNQS-IMVQWQPPPESE 748

Query: 186 WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS 245
            NGVL GY + Y++ +G         + S E++     +L I     +T+Y I V  YN 
Sbjct: 749 HNGVLHGYILRYRL-AGLPGEYQYKNITSAEINYCLVTDLII-----WTQYEIQVASYNG 802

Query: 246 VGKGPFSEPFIARTNEG 262
            G G FS P    T +G
Sbjct: 803 AGLGAFSRPVTEYTLQG 819

Synaptic adhesion molecule that promotes lamina-specific connectivity in the retina.

Gallus gallus (taxid: 9031)

>sp|Q6V4S5|SDK2_MOUSE Protein sidekick-2 OS=Mus musculus GN=Sdk2 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 117/245 (47%), Gaps = 11/245 (4%)

Query: 20  LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN--IRITEESSRSLQISWT 77
           L I+     D GT +C   +  G       L V++ P AP++    ++    R++ ++W 
Sbjct: 558 LHISQTWSGDIGTYTCRVLSAGGNDSRNAHLRVRQLPHAPEHPVATLSTVERRAINLTWA 617

Query: 78  APYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL 137
            P+ GN+ + +Y+++   +   W T  L  + P + TS  ++ L+PA  YQ RL A N +
Sbjct: 618 KPFDGNSPLMRYVLEMSENNAPW-TILLASVDPEA-TSVMVKGLVPARSYQFRLCAVNDV 675

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G  +   + +  +L E P  AP +     G  + + ++I+W+ PP    NG+L GY + Y
Sbjct: 676 GKGQFSKDTERVSLPEEPPTAPPQNVIASGRTNQS-IMIQWQPPPESHQNGILKGYIIRY 734

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
            + +G  +      +   +++N     L +  L  +T Y I V  YNS G G +S     
Sbjct: 735 CL-AGLPVGYQFKNITDADVNN-----LLLEDLIIWTNYEIEVAAYNSAGLGVYSSKVTE 788

Query: 258 RTNEG 262
            T +G
Sbjct: 789 WTLQG 793

Cell adhesion protein that guides axonal terminals to specific synapses in developing neurons.

Mus musculus (taxid: 10090)

>sp|Q7Z5N4|SDK1_HUMAN Protein sidekick-1 OS=Homo sapiens GN=SDK1 PE=1 SV=3

 Score = 91.7 bits (226), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 118/259 (45%), Gaps = 14/259 (5%)

Query: 6   TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRIT 65
           T R  V +DG    L I+     D G  SC   +  G      +L V E P +P+N+ ++
Sbjct: 621 TSRIVVEKDG---SLLISQTWSGDIGDYSCEIVSEGGNDSRMARLEVIELPHSPQNLLVS 677

Query: 66  EESSRS--LQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP 123
             SS S  + +SW  P+ GN+ I  YI++   +   W    L  + P   T  T+  L P
Sbjct: 678 PNSSHSHAVVLSWVRPFDGNSPILYYIVELSENNSPWKVH-LSNVGP-EMTGVTVSGLTP 735

Query: 124 ATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPR 183
           A  YQ R+ A N +G  +  AE     L E P  AP +     G  + + ++++W+ PP 
Sbjct: 736 ARTYQFRVCAVNEVGRGQYSAETSRLMLPEEPPSAPPKNIVASGRTNQS-IMVQWQPPPE 794

Query: 184 ESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGY 243
              NGVL GY + Y++ +G         + S E++     +L I     +T+Y I V  Y
Sbjct: 795 TEHNGVLRGYILRYRL-AGLPGEYQQRNITSPEVNYCLVTDLII-----WTQYEIQVAAY 848

Query: 244 NSVGKGPFSEPFIARTNEG 262
           N  G G FS      T +G
Sbjct: 849 NGAGLGVFSRAVTEYTLQG 867

Cell adhesion protein that guides axonal terminals to specific synapses in developing neurons. Dysregulation of this protein may play an important role in podocyte dysfunction in HIV-associated nephropathy.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
270009930	1348	hypothetical protein TcasGA2_TC009254 [T	0.937	0.189	0.515	4e-70
189238865	1918	PREDICTED: similar to AGAP007092-PA [Tri	0.937	0.133	0.515	4e-70
242008252	1528	down syndrome cell adhesion molecule, pu	0.941	0.168	0.475	8e-65
357626167	1208	hypothetical protein KGM_10570 [Danaus p	0.937	0.211	0.494	9e-65
328711870	1925	PREDICTED: Down syndrome cell adhesion m	0.941	0.133	0.456	9e-64
328711868	1948	PREDICTED: Down syndrome cell adhesion m	0.941	0.131	0.456	9e-64
170027744	1693	down syndrome cell adhesion molecule [Cu	0.908	0.146	0.470	1e-58
442630978	1935	down syndrome cell adhesion molecule 4,	0.937	0.132	0.441	2e-58
194865958	1774	GG14294 [Drosophila erecta] gi|190653471	0.937	0.144	0.441	2e-58
195491267	1815	GE20723 [Drosophila yakuba] gi|194179590	0.937	0.141	0.441	3e-58

>gi|270009930|gb|EFA06378.1| hypothetical protein TcasGA2_TC009254 [Tribolium castaneum]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 134/260 (51%), Positives = 178/260 (68%), Gaps = 4/260 (1%)

Query: 4   RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
           RY++R Q L +GM+SEL I   +RQD+G  +C A+N +G+ +M IQL+VQE PE P+N+R
Sbjct: 249 RYSVRAQQLAEGMVSELSIERTIRQDTGIFTCSASNAYGSDDMNIQLIVQEIPEPPRNVR 308

Query: 64  ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP 123
           + ++ SRS+ ISWT PY+GN+ IT YI+QYK   E WP QP K+ VPGSQ + TLQ L P
Sbjct: 309 VMDQLSRSIGISWTQPYAGNSPITNYIVQYKPGSEAWPNQPAKVTVPGSQITTTLQNLRP 368

Query: 124 ATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPR 183
           A  Y +R+LAEN LG+S+    +Q STLEE P+GAP ++ ++      TEL++ W+ P R
Sbjct: 369 AQVYHLRILAENRLGLSDPSQVVQVSTLEEVPSGAPVDIRAE--AKSSTELVVTWEPPNR 426

Query: 184 ESWNGVLLGYDVGYQISS--GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVR 241
           E+WNG LLGY VGYQ  S   S+    SYT KSVE+   Y GE  + GL+ YT Y I+V+
Sbjct: 427 ETWNGNLLGYHVGYQEVSTEDSNNVAQSYTFKSVEVRPHYGGEAVLQGLSKYTTYGIIVQ 486

Query: 242 GYNSVGKGPFSEPFIARTNE 261
            YNS G GP S+P  ART E
Sbjct: 487 AYNSRGSGPASDPVTARTLE 506

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238865|ref|XP_972891.2| PREDICTED: similar to AGAP007092-PA [Tribolium castaneum]

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 134/260 (51%), Positives = 178/260 (68%), Gaps = 4/260 (1%)

Query: 4    RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
            RY++R Q L +GM+SEL I   +RQD+G  +C A+N +G+ +M IQL+VQE PE P+N+R
Sbjct: 859  RYSVRAQQLAEGMVSELSIERTIRQDTGIFTCSASNAYGSDDMNIQLIVQEIPEPPRNVR 918

Query: 64   ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP 123
            + ++ SRS+ ISWT PY+GN+ IT YI+QYK   E WP QP K+ VPGSQ + TLQ L P
Sbjct: 919  VMDQLSRSIGISWTQPYAGNSPITNYIVQYKPGSEAWPNQPAKVTVPGSQITTTLQNLRP 978

Query: 124  ATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPR 183
            A  Y +R+LAEN LG+S+    +Q STLEE P+GAP ++ ++      TEL++ W+ P R
Sbjct: 979  AQVYHLRILAENRLGLSDPSQVVQVSTLEEVPSGAPVDIRAE--AKSSTELVVTWEPPNR 1036

Query: 184  ESWNGVLLGYDVGYQISS--GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVR 241
            E+WNG LLGY VGYQ  S   S+    SYT KSVE+   Y GE  + GL+ YT Y I+V+
Sbjct: 1037 ETWNGNLLGYHVGYQEVSTEDSNNVAQSYTFKSVEVRPHYGGEAVLQGLSKYTTYGIIVQ 1096

Query: 242  GYNSVGKGPFSEPFIARTNE 261
             YNS G GP S+P  ART E
Sbjct: 1097 AYNSRGSGPASDPVTARTLE 1116

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008252|ref|XP_002424921.1| down syndrome cell adhesion molecule, putative [Pediculus humanus corporis] gi|212508527|gb|EEB12183.1| down syndrome cell adhesion molecule, putative [Pediculus humanus corporis]

 Score =  253 bits (645), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 128/269 (47%), Positives = 170/269 (63%), Gaps = 12/269 (4%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
           SRY I +Q+L DG++SE+ I    R D+G  +C ATN  G  EM IQL+VQE PE PKNI
Sbjct: 689 SRYIINKQILTDGLVSEISIPKTYRHDTGIFTCYATNSFGRDEMKIQLIVQENPEIPKNI 748

Query: 63  RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLL 122
           RI ++ SRSLQISWT PY+GN+ IT YII+YK S E W      IIV GS+T  TL+ L 
Sbjct: 749 RINDKQSRSLQISWTQPYAGNSQITNYIIEYKKSNENWEKNSNNIIVTGSETFTTLKNLK 808

Query: 123 PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP 182
           P T Y VR++AENPLG SE    +Q  T EE P+G P  V  +      TE+ + W +PP
Sbjct: 809 PFTSYHVRVIAENPLGKSEPSEFIQVITQEEVPDGPPLNVKGNAE--SSTEIKVSWDSPP 866

Query: 183 RESWNGVLLGYDVGYQ----------ISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP 232
           + +WNG LLGY VGY+          I + SS  +++Y  K+V+  +++E E+ +  L  
Sbjct: 867 KNTWNGNLLGYYVGYKENLLYHVTTSILNSSSKYINNYNFKTVDKISEFEEEIILEKLNK 926

Query: 233 YTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
           YT Y+I+V+ +NS G GP SEP + RT E
Sbjct: 927 YTTYSIIVQAFNSKGSGPASEPILIRTKE 955

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626167|gb|EHJ76353.1| hypothetical protein KGM_10570 [Danaus plexippus]

 Score =  253 bits (645), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 131/265 (49%), Positives = 173/265 (65%), Gaps = 9/265 (3%)

Query: 4    RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
            RYTIREQVL+DG++SEL I    RQD+G L+C A+N +G  EM I L+VQE PE PKNIR
Sbjct: 894  RYTIREQVLDDGLVSELSILQTYRQDTGALTCRASNAYGQDEMLIHLVVQEVPEMPKNIR 953

Query: 64   ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP 123
            + ++ SRS+QISWT PY+GN+ I  YI+QYK + E WPT P K+IVPGS TS+++Q L P
Sbjct: 954  VIDQQSRSIQISWTQPYAGNSPIINYIVQYKEAPEPWPTTPQKVIVPGSVTSSSVQNLQP 1013

Query: 124  ATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPR 183
            AT Y +R++AEN LG SE    +Q +T EE P+G+P +V  +      TEL + W  P R
Sbjct: 1014 ATSYHLRIIAENRLGQSEPSQLVQVTTTEEVPSGSPIDVRVE--AKSSTELTVSWDPPQR 1071

Query: 184  ESWNGVLLGYDVGYQISSGSSLALS-------SYTLKSVELDNQYEGELRIPGLTPYTKY 236
            + WNG +LGY VG+Q  + +S  LS       SYT+++VE          + GL  +  Y
Sbjct: 1072 DLWNGNILGYYVGFQELNSNSTVLSASGPGGASYTVRTVEGTGSARARTTLAGLQKHAAY 1131

Query: 237  AIVVRGYNSVGKGPFSEPFIARTNE 261
            A+VV+ YNS G GP S P  A T E
Sbjct: 1132 AVVVQAYNSRGAGPASPPTTATTLE 1156

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711870|ref|XP_003244665.1| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like isoform 2 [Acyrthosiphon pisum]

 Score =  249 bits (636), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 121/265 (45%), Positives = 175/265 (66%), Gaps = 8/265 (3%)

Query: 4    RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
            R+TIREQ  ++G++SELGI+ V R D+G   C  +N  G  E +I+L+VQETPE+PK+IR
Sbjct: 864  RFTIREQSKDNGIMSELGISPVYRHDTGFFKCTGSNNFGEDENSIELIVQETPESPKDIR 923

Query: 64   ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP 123
            I  + SRS++I+W  PY GN+ I  YI+QYK    +W T P K+IV G+QT  T++ L P
Sbjct: 924  ILNQQSRSMEITWNQPYDGNSVILNYIVQYKLVASLWITDPAKVIVAGTQTVTTIEGLTP 983

Query: 124  ATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPR 183
            AT Y +R++AEN +G SE   E QA T EE P+  P+ + ++      TELLI W+ PP 
Sbjct: 984  ATSYHIRVIAENAMGFSEPSDEAQAFTQEEVPSMPPQNIRAEAK--SKTELLIMWEPPPS 1041

Query: 184  ESWNGVLLGYDVGY------QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA 237
            +S NG+L+GY +GY      Q  +  ++  S Y +K++ +++QY  +  I GL PYT Y+
Sbjct: 1042 DSCNGILIGYHIGYLPTDDTQNPTTPTVPHSRYIIKTININSQYGEDFVISGLIPYTTYS 1101

Query: 238  IVVRGYNSVGKGPFSEPFIARTNEG 262
            IVV+ +NS G GPFS+P   +T+EG
Sbjct: 1102 IVVQAFNSRGTGPFSKPITVQTDEG 1126

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711868|ref|XP_001951010.2| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like isoform 1 [Acyrthosiphon pisum]

 Score =  249 bits (636), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 121/265 (45%), Positives = 175/265 (66%), Gaps = 8/265 (3%)

Query: 4    RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
            R+TIREQ  ++G++SELGI+ V R D+G   C  +N  G  E +I+L+VQETPE+PK+IR
Sbjct: 864  RFTIREQSKDNGIMSELGISPVYRHDTGFFKCTGSNNFGEDENSIELIVQETPESPKDIR 923

Query: 64   ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP 123
            I  + SRS++I+W  PY GN+ I  YI+QYK    +W T P K+IV G+QT  T++ L P
Sbjct: 924  ILNQQSRSMEITWNQPYDGNSVILNYIVQYKLVASLWITDPAKVIVAGTQTVTTIEGLTP 983

Query: 124  ATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPR 183
            AT Y +R++AEN +G SE   E QA T EE P+  P+ + ++      TELLI W+ PP 
Sbjct: 984  ATSYHIRVIAENAMGFSEPSDEAQAFTQEEVPSMPPQNIRAEAK--SKTELLIMWEPPPS 1041

Query: 184  ESWNGVLLGYDVGY------QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA 237
            +S NG+L+GY +GY      Q  +  ++  S Y +K++ +++QY  +  I GL PYT Y+
Sbjct: 1042 DSCNGILIGYHIGYLPTDDTQNPTTPTVPHSRYIIKTININSQYGEDFVISGLIPYTTYS 1101

Query: 238  IVVRGYNSVGKGPFSEPFIARTNEG 262
            IVV+ +NS G GPFS+P   +T+EG
Sbjct: 1102 IVVQAFNSRGTGPFSKPITVQTDEG 1126

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170027744|ref|XP_001841757.1| down syndrome cell adhesion molecule [Culex quinquefasciatus] gi|167862327|gb|EDS25710.1| down syndrome cell adhesion molecule [Culex quinquefasciatus]

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 120/255 (47%), Positives = 163/255 (63%), Gaps = 7/255 (2%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
           +RY IREQVL+DGM+SELGI++  RQD+G   C ATN  G  EM+IQL++QE PEAPKN+
Sbjct: 669 NRYNIREQVLDDGMVSELGISHTYRQDTGIYVCHATNAFGHDEMSIQLVIQEVPEAPKNL 728

Query: 63  RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLL 122
           RI  + SR+LQ+SW+ P++GN+ I +Y ++YK   + W +    I V G+QT  TLQ L 
Sbjct: 729 RINSQQSRTLQLSWSQPFAGNSPIEKYNVEYKLVTDSWQSAE-HITVAGTQTVITLQNLK 787

Query: 123 PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP 182
           PA  Y +R+ AEN LG SE    +Q +TLEE P+G P  +  +P     TE+ + W+AP 
Sbjct: 788 PAKAYHIRISAENKLGASEYSEVIQVTTLEEVPSGPPLNIKGEPK--SSTEIFLSWEAPD 845

Query: 183 RESWNGVLLGYDVGYQISSGSSLA----LSSYTLKSVELDNQYEGELRIPGLTPYTKYAI 238
           RE WNG LLGY VGYQ +SG +         +  K+VE+   + GE  +  L   T+Y I
Sbjct: 846 REQWNGNLLGYYVGYQEASGPNDKDINPTQGFNFKTVEVRTHFGGETMLTNLNKCTQYNI 905

Query: 239 VVRGYNSVGKGPFSE 253
           VV+ Y S G GP S+
Sbjct: 906 VVQAYTSQGSGPPSK 920

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442630978|ref|NP_001261571.1| down syndrome cell adhesion molecule 4, isoform I [Drosophila melanogaster] gi|442630980|ref|NP_001261572.1| down syndrome cell adhesion molecule 4, isoform J [Drosophila melanogaster] gi|440215478|gb|AGB94266.1| down syndrome cell adhesion molecule 4, isoform I [Drosophila melanogaster] gi|440215479|gb|AGB94267.1| down syndrome cell adhesion molecule 4, isoform J [Drosophila melanogaster]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 116/263 (44%), Positives = 166/263 (63%), Gaps = 7/263 (2%)

Query: 3    SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
            SRYTIR+QVL+DGM+SELGI++  RQD+G   C A+N  G  EM+IQL+VQE PE PKN+
Sbjct: 853  SRYTIRDQVLDDGMVSELGISHTYRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKNL 912

Query: 63   RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLL 122
            RI  + SRSLQ++W+ P++GN+ I +Y I YK   ++W      + + G+QT   +Q L 
Sbjct: 913  RINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQISDIWQNAE-HLTIAGAQTVINIQQLR 971

Query: 123  PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP 182
            PA  Y +R+ AEN LG SE    +Q +TLEE P+G P  V ++P     TE+ + W AP 
Sbjct: 972  PAKAYHIRMSAENKLGASEFSEVVQVTTLEEVPSGPPLAVRAEPK--SSTEIFVTWDAPE 1029

Query: 183  RESWNGVLLGYDVGYQIS----SGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAI 238
            R+ WNG+LLGY VGYQ+S             ++ K+VE+ + + GE  +  L  +T+Y +
Sbjct: 1030 RDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEVRSHFGGETVLANLNKFTQYHV 1089

Query: 239  VVRGYNSVGKGPFSEPFIARTNE 261
            +V+ Y S G GP S+    +T E
Sbjct: 1090 IVQAYTSQGSGPPSKEIAVQTME 1112

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865958|ref|XP_001971688.1| GG14294 [Drosophila erecta] gi|190653471|gb|EDV50714.1| GG14294 [Drosophila erecta]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 116/263 (44%), Positives = 166/263 (63%), Gaps = 7/263 (2%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
           SRYTIR+QVL+DGM+SELGI++  RQD+G   C A+N  G  EM+IQL+VQE PE PKN+
Sbjct: 715 SRYTIRDQVLDDGMVSELGISHTYRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKNL 774

Query: 63  RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLL 122
           RI  + SRSLQ++W+ P++GN+ I +Y I YK   ++W      + + G+QT   +Q L 
Sbjct: 775 RINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQISDIWQNAE-HLTIAGAQTVINIQQLR 833

Query: 123 PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP 182
           PA  Y +R+ AEN LG SE    +Q +TLEE P+G P  V ++P     TE+ + W AP 
Sbjct: 834 PAKAYHIRMSAENKLGASEFSEVVQVTTLEEVPSGPPLAVRAEPK--SSTEIFVTWDAPE 891

Query: 183 RESWNGVLLGYDVGYQIS----SGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAI 238
           R+ WNG+LLGY VGYQ+S             ++ K+VE+ + + GE  +  L  +T+Y +
Sbjct: 892 RDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEVRSHFGGETVLANLNKFTQYHV 951

Query: 239 VVRGYNSVGKGPFSEPFIARTNE 261
           +V+ Y S G GP S+    +T E
Sbjct: 952 IVQAYTSQGSGPPSKEIAVQTME 974

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491267|ref|XP_002093489.1| GE20723 [Drosophila yakuba] gi|194179590|gb|EDW93201.1| GE20723 [Drosophila yakuba]

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 116/263 (44%), Positives = 166/263 (63%), Gaps = 7/263 (2%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
           SRYTIR+QVL+DGM+SELGI++  RQD+G   C A+N  G  EM+IQL+VQE PE PKN+
Sbjct: 715 SRYTIRDQVLDDGMVSELGISHTYRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKNL 774

Query: 63  RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLL 122
           RI  + SRSLQ++W+ P++GN+ I +Y I YK   ++W      + + G+QT   +Q L 
Sbjct: 775 RINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQISDIWQNAE-HLTIAGAQTVINIQQLR 833

Query: 123 PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP 182
           PA  Y +R+ AEN LG SE    +Q +TLEE P+G P  V ++P     TE+ + W AP 
Sbjct: 834 PAKAYHIRMSAENKLGASEFSEVVQVTTLEEVPSGPPLAVRAEPK--SSTEIFVTWDAPE 891

Query: 183 RESWNGVLLGYDVGYQIS----SGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAI 238
           R+ WNG+LLGY VGYQ+S             ++ K+VE+ + + GE  +  L  +T+Y +
Sbjct: 892 RDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEVRSHFGGETVLANLNKFTQYHV 951

Query: 239 VVRGYNSVGKGPFSEPFIARTNE 261
           +V+ Y S G GP S+    +T E
Sbjct: 952 IVQAYTSQGSGPPSKEIAVQTME 974

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.937	0.133	0.431	6.2e-54
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.934	0.125	0.388	2e-49
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.534	0.071	0.346	6e-35
UNIPROTKB|F1NY98	1994	DSCAM "Uncharacterized protein	0.919	0.125	0.340	4.1e-34
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.919	0.124	0.325	3.7e-33
MGI|MGI:1196281	2013	Dscam "Down syndrome cell adhe	0.919	0.124	0.321	1.3e-32
RGD|619992	2013	Dscam "Down syndrome cell adhe	0.919	0.124	0.321	1.3e-32
UNIPROTKB|Q8TD84	2053	DSCAML1 "Down syndrome cell ad	0.915	0.121	0.346	1.9e-31
MGI|MGI:2150309	2053	Dscaml1 "Down syndrome cell ad	0.915	0.121	0.346	1.9e-31
UNIPROTKB|F1N4K6	1886	DSCAML1 "Uncharacterized prote	0.915	0.132	0.346	2.2e-31

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 572 (206.4 bits), Expect = 6.2e-54, P = 6.2e-54
 Identities = 116/269 (43%), Positives = 166/269 (61%)

Query:     3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
             SRYTIR+QVL+DGM+SELGI++  RQD+G   C A+N  G  EM+IQL+VQE PE PKN+
Sbjct:   853 SRYTIRDQVLDDGMVSELGISHTYRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKNL 912

Query:    63 RITEESSRSLQISWTAPYSGNTAITQYIIQYK------SSEEMWPTQPLKIIVPGSQTSA 116
             RI  + SRSLQ++W+ P++GN+ I +Y I YK      S  ++W      + + G+QT  
Sbjct:   913 RINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQISDFFSPSDIWQNAE-HLTIAGAQTVI 971

Query:   117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLI 176
              +Q L PA  Y +R+ AEN LG SE    +Q +TLEE P+G P  V ++P     TE+ +
Sbjct:   972 NIQQLRPAKAYHIRMSAENKLGASEFSEVVQVTTLEEVPSGPPLAVRAEPK--SSTEIFV 1029

Query:   177 KWKAPPRESWNGVLLGYDVGYQIXXXXXXX----XXXYTLKSVELDNQYEGELRIPGLTP 232
              W AP R+ WNG+LLGY VGYQ+              ++ K+VE+ + + GE  +  L  
Sbjct:  1030 TWDAPERDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEVRSHFGGETVLANLNK 1089

Query:   233 YTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
             +T+Y ++V+ Y S G GP S+    +T E
Sbjct:  1090 FTQYHVIVQAYTSQGSGPPSKEIAVQTME 1118

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 530 (191.6 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 101/260 (38%), Positives = 159/260 (61%)

Query:     3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
             +RYTIRE++L  G++S L I    R DS   +C+ATN  G+ + +I ++VQE PE P  +
Sbjct:   864 NRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDASINMIVQEVPEMPYAL 923

Query:    63 RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLL 122
             ++ ++S RS+Q+SW  PY GN+ + +YII++K S   W ++  ++IVPG  T A +Q L 
Sbjct:   924 KVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSRASW-SEIDRVIVPGHTTEAQVQKLS 982

Query:   123 PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP 182
             PAT Y +R++AEN +G S++   +   T EEAP+G P+ +  +P  V+ T + + WK PP
Sbjct:   983 PATTYNIRIVAENAIGTSQSSEAVTIITAEEAPSGKPQNIKVEP--VNQTTMRVTWKPPP 1040

Query:   183 RESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRG 242
             R  WNG +LGY VGY++           T+  +  + + E  L +  L  YT+Y++V++ 
Sbjct:  1041 RTEWNGEILGYYVGYKLSNTNSSYVFE-TINFITEEGK-EHNLELQNLRVYTQYSVVIQA 1098

Query:   243 YNSVGKGPFSEPFIARTNEG 262
             +N +G GP SE     T EG
Sbjct:  1099 FNKIGAGPLSEEEKQFTAEG 1118

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 216 (81.1 bits), Expect = 6.0e-35, Sum P(3) = 6.0e-35
 Identities = 52/150 (34%), Positives = 73/150 (48%)

Query:   115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL 174
             SA +  L PAT + +R+ A N +  S     +   T EEAP  AP  V    G    +EL
Sbjct:   957 SAIVAGLTPATTFLIRMQAINEIERSAYTEAIVLKTQEEAPTEAPSNVQVQTG--GESEL 1014

Query:   175 LIKWKAPPRESWNGVLLGYDVGY--QIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLTP 232
             ++ W+ PPRESWNG L+GY V    +            +LKS  +      +  + GL  
Sbjct:  1015 IVTWQIPPRESWNGELIGYTVNCSEEKQNINFISVVNSSLKSTIVSGWATTKATLRGLRK 1074

Query:   233 YTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
             Y++YA+ +R  NS G GP+S      T EG
Sbjct:  1075 YSRYAVTIRAMNSFGSGPWSAAIFGTTAEG 1104

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

UNIPROTKB|F1NY98 DSCAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 386 (140.9 bits), Expect = 4.1e-34, P = 4.1e-34
 Identities = 89/261 (34%), Positives = 139/261 (53%)

Query:     3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
             SRY +  + + D +IS L I   +R+DSG  SC A N +G     IQL VQE P+ P+ I
Sbjct:   819 SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPE-I 877

Query:    63 RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPT-QPLKIIVPGSQTSATLQPL 121
              I E  +RS+ + WT  + GN+ IT Y I+ K+  + W + Q  K + P     AT+  L
Sbjct:   878 EIREVRARSIALRWTMGFDGNSPITGYDIECKNKSDSWDSVQRTKDVSP-QLNQATIIDL 936

Query:   122 LPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP 181
              P++ Y +R+ A+N +G SE   EL  +T E AP+G P++V  +P  +    + + WKAP
Sbjct:   937 HPSSTYNIRMYAKNRIGKSEASNELTITTDEAAPDGPPQDVQLEP--ISSQSIRVTWKAP 994

Query:   182 PRESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGEL-RIPGLTPYTKYAIVV 240
              +   NG++ GY +GY+           +    + +D   + E+  +  L  +T+Y +VV
Sbjct:   995 KKHLQNGIIRGYQIGYR----EYSAGGNFQFNIISIDTTGDSEVYTLNNLKKFTQYGMVV 1050

Query:   241 RGYNSVGKGPFSEPFIARTNE 261
             +  N  G GP S+  I  T E
Sbjct:  1051 QACNRAGIGPSSQEIITTTLE 1071

GO:0005886 "plasma membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 377 (137.8 bits), Expect = 3.7e-33, P = 3.7e-33
 Identities = 85/261 (32%), Positives = 139/261 (53%)

Query:     3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
             +RY +  + + + +IS L I   +R+DSG  SC A N +G     IQL VQE P+ P+ I
Sbjct:   833 ARYLVSTKEVGEEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPE-I 891

Query:    63 RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPT-QPLKIIVPGSQTSATLQPL 121
              I +  +R++ + WT  + GN+ IT Y I+ K+  + W + Q  K + P    SAT+  +
Sbjct:   892 EIKDVKARTITLRWTMGFDGNSPITGYDIECKNKSDSWDSAQRTKDVSP-QLNSATIIDI 950

Query:   122 LPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP 181
              P++ Y +R+ A+N +G SE   EL  +  E AP+G P+EV  +P  +    + + WKAP
Sbjct:   951 HPSSTYSIRMYAKNRIGKSEPSNELTITADEAAPDGPPQEVHLEP--ISSQSIRVTWKAP 1008

Query:   182 PRESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGEL-RIPGLTPYTKYAIVV 240
              +   NG++ GY +GY+           +    + +D   + E+  +  L  +T+Y +VV
Sbjct:  1009 KKHLQNGIIRGYQIGYR----EYSTGGNFQFNIISVDTSGDSEVYTLDNLNKFTQYGLVV 1064

Query:   241 RGYNSVGKGPFSEPFIARTNE 261
             +  N  G GP S+  I  T E
Sbjct:  1065 QACNRAGTGPSSQEIITTTLE 1085

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

MGI|MGI:1196281 Dscam "Down syndrome cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 372 (136.0 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 84/261 (32%), Positives = 138/261 (52%)

Query:     3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
             +RY +  + + + +IS L I   +R+DSG  SC A N +G     IQL VQE P+ P+ I
Sbjct:   833 ARYLVSTKEVGEEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPE-I 891

Query:    63 RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPT-QPLKIIVPGSQTSATLQPL 121
              I +  +R++ + WT  + GN+ IT Y I+ K+  + W + Q  K + P    SAT+  +
Sbjct:   892 EIKDVKARTITLRWTMGFDGNSPITGYDIECKNKSDSWDSAQRTKDVSP-QLNSATIIDI 950

Query:   122 LPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP 181
              P++ Y +R+ A+N +G SE   E+  +  E AP+G P+EV  +P       + + WKAP
Sbjct:   951 HPSSTYSIRMYAKNRIGKSEPSNEITITADEAAPDGPPQEVHLEP--TSSQSIRVTWKAP 1008

Query:   182 PRESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGEL-RIPGLTPYTKYAIVV 240
              +   NG++ GY +GY+           +    + +D   + E+  +  L  +T+Y +VV
Sbjct:  1009 KKHLQNGIIRGYQIGYR----EYSTGGNFQFNIISIDTTGDSEVYTLDNLNKFTQYGLVV 1064

Query:   241 RGYNSVGKGPFSEPFIARTNE 261
             +  N  G GP S+  I  T E
Sbjct:  1065 QACNRAGTGPSSQEIITTTLE 1085

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IDA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|619992 Dscam "Down syndrome cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 372 (136.0 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 84/261 (32%), Positives = 138/261 (52%)

Query:     3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
             +RY +  + + + +IS L I   +R+DSG  SC A N +G     IQL VQE P+ P+ I
Sbjct:   833 ARYLVSTKEVGEEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPE-I 891

Query:    63 RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPT-QPLKIIVPGSQTSATLQPL 121
              I +  +R++ + WT  + GN+ IT Y I+ K+  + W + Q  K + P    SAT+  +
Sbjct:   892 EIKDVKARTITLRWTMGFDGNSPITGYDIECKNKSDSWDSAQRTKDVSP-QLNSATIIDI 950

Query:   122 LPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP 181
              P++ Y +R+ A+N +G SE   E+  +  E AP+G P+EV  +P       + + WKAP
Sbjct:   951 HPSSTYSIRMYAKNRIGKSEPSNEITITADEAAPDGPPQEVHLEP--TSSQSIRVTWKAP 1008

Query:   182 PRESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGEL-RIPGLTPYTKYAIVV 240
              +   NG++ GY +GY+           +    + +D   + E+  +  L  +T+Y +VV
Sbjct:  1009 KKHLQNGIIRGYQIGYR----EYSTGGNFQFNIISIDTTGDSEVYTLDNLNKFTQYGLVV 1064

Query:   241 RGYNSVGKGPFSEPFIARTNE 261
             +  N  G GP S+  I  T E
Sbjct:  1065 QACNRAGTGPSSQEIITTTLE 1085

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=ISO;ISS

GO:0007626 "locomotory behavior" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=ISO;ISS

GO:0042327 "positive regulation of phosphorylation" evidence=ISO;ISS

GO:0048813 "dendrite morphogenesis" evidence=ISO

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IMP

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=ISO;ISS

UNIPROTKB|Q8TD84 DSCAML1 "Down syndrome cell adhesion molecule-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 361 (132.1 bits), Expect = 1.9e-31, P = 1.9e-31
 Identities = 90/260 (34%), Positives = 134/260 (51%)

Query:     4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
             RY I  +   D ++S L +    R DS   SC A N +G     IQL VQE P+ P+ + 
Sbjct:   836 RYAIATKDNGDEVVSTLKLKPADRGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPPE-LE 894

Query:    64 ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP-TQPLKIIVPGSQTSATLQPLL 122
             I E  +RS+ + WT  + GN+ IT + I+YK+  + W   Q  + I P +   A +  L 
Sbjct:   895 IREVKARSMNLRWTQRFDGNSIITGFDIEYKNKSDSWDFKQSTRNISP-TINQANIVDLH 953

Query:   123 PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP 182
             PA+ Y +R+ + N +G SE   EL  ST E AP+G P +VT  P  V    + + WKAP 
Sbjct:   954 PASVYSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPK 1011

Query:   183 RESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGEL-RIPGLTPYTKYAIVVR 241
             +E  NGV+ GY +GY+           Y++  VE+    + E+  +  L  + +Y +VV+
Sbjct:  1012 KELQNGVIRGYQIGYR--ENSPGSNGQYSI--VEMKATGDSEVYTLDNLKKFAQYGVVVQ 1067

Query:   242 GYNSVGKGPFSEPFIARTNE 261
              +N  G GP S    A T E
Sbjct:  1068 AFNRAGTGPSSSEINATTLE 1087

GO:0016021 "integral to membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0007409 "axonogenesis" evidence=NAS

GO:0009986 "cell surface" evidence=IDA

GO:0009953 "dorsal/ventral pattern formation" evidence=NAS

GO:0007420 "brain development" evidence=IDA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IDA

GO:0007417 "central nervous system development" evidence=NAS

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0001709 "cell fate determination" evidence=NAS

GO:0005886 "plasma membrane" evidence=TAS

MGI|MGI:2150309 Dscaml1 "Down syndrome cell adhesion molecule like 1" [Mus musculus (taxid:10090)]

 Score = 361 (132.1 bits), Expect = 1.9e-31, P = 1.9e-31
 Identities = 90/260 (34%), Positives = 134/260 (51%)

Query:     4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
             RY I  +   D ++S L +    R DS   SC A N +G     IQL VQE P+ P+ + 
Sbjct:   836 RYAIATKDNGDEVVSTLKLKPADRGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPPE-LE 894

Query:    64 ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP-TQPLKIIVPGSQTSATLQPLL 122
             I E  +RS+ + WT  + GN+ IT + I+YK+  + W   Q  + I P +   A +  L 
Sbjct:   895 IREVKARSMNLRWTQRFDGNSIITGFDIEYKNKSDSWDFKQSTRNISP-TINQANIVDLH 953

Query:   123 PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP 182
             PA+ Y +R+ + N +G SE   EL  ST E AP+G P +VT  P  V    + + WKAP 
Sbjct:   954 PASVYSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPK 1011

Query:   183 RESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGEL-RIPGLTPYTKYAIVVR 241
             +E  NGV+ GY +GY+           Y++  VE+    + E+  +  L  + +Y +VV+
Sbjct:  1012 KELQNGVIRGYQIGYR--ENSPGSNGQYSI--VEMKATGDSEVYTLDNLKKFAQYGVVVQ 1067

Query:   242 GYNSVGKGPFSEPFIARTNE 261
              +N  G GP S    A T E
Sbjct:  1068 AFNRAGTGPSSSEINATTLE 1087

GO:0005886 "plasma membrane" evidence=ISA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO;ISA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016338 "calcium-independent cell-cell adhesion" evidence=ISA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=IMP

UNIPROTKB|F1N4K6 DSCAML1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 360 (131.8 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 90/260 (34%), Positives = 134/260 (51%)

Query:     4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
             RY I  +   D ++S L +    R DS   SC A N +G     IQL VQE P+ P+ + 
Sbjct:   669 RYAIATKDNGDEVVSTLKLKPADRGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPPE-LE 727

Query:    64 ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP-TQPLKIIVPGSQTSATLQPLL 122
             I E  +RS+ + WT  + GN+ IT + I+YK+  + W   Q  + I P +   A +  L 
Sbjct:   728 IREVKARSMNLRWTQRFDGNSIITGFDIEYKNKTDSWDFKQSTRNISP-TINQANIVDLH 786

Query:   123 PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP 182
             PA+ Y +R+ + N +G SE   EL  ST E AP+G P +VT  P  V    + + WKAP 
Sbjct:   787 PASVYSIRMYSFNKIGRSEPSKELTISTEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPK 844

Query:   183 RESWNGVLLGYDVGYQIXXXXXXXXXXYTLKSVELDNQYEGEL-RIPGLTPYTKYAIVVR 241
             +E  NGV+ GY +GY+           Y++  VE+    + E+  +  L  + +Y +VV+
Sbjct:   845 KELQNGVIRGYQIGYR--ENSPGSNGQYSI--VEMKATGDSEVYTLDNLKKFAQYGVVVQ 900

Query:   242 GYNSVGKGPFSEPFIARTNE 261
              +N  G GP S    A T E
Sbjct:   901 AFNRAGTGPSSSEINATTLE 920

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	273
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	3e-17
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	1e-15
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	2e-15
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	9e-11
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	4e-08
cd05735	88	cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) doma	6e-08
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	2e-07
smart00410	85	smart00410, IG_like, Immunoglobulin like	5e-05
smart00409	85	smart00409, IG, Immunoglobulin	5e-05
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-04
cd05758	98	cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I	0.001

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 74.5 bits (183), Expect = 3e-17
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P  P N+R+T+ +S S+ +SWT P      IT Y+++Y+        +      PGS+TS
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEV--TPGSETS 58

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
            TL  L P T+Y+ R+ A N  G S     +  +T
Sbjct: 59  YTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 70.0 bits (171), Expect = 1e-15
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTA--ITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
           P  P N+R+T+ +S S+ +SW  P        I  Y ++Y+     W     ++ V  S 
Sbjct: 1   PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEW----KEVNVTPSS 56

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMS 140
           TS TL  L P T+Y+ R+ A N  G  
Sbjct: 57  TSYTLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 69.4 bits (170), Expect = 2e-15
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
           AP N+ +T+ +S SL +SW+ P  GN  IT Y ++Y+        +   I VPG+ TS T
Sbjct: 2   APTNLTVTDVTSTSLTLSWSPP-PGNGPITGYEVEYRPVNGGEEWKE--ITVPGTTTSYT 58

Query: 118 LQPLLPATQYQVRLLAEN 135
           L  L P T+Y+VR+ A N
Sbjct: 59  LTGLKPGTEYEVRVQAVN 76

Length = 84

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 57.1 bits (138), Expect = 9e-11
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 11/103 (10%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
             P  +      V  T + + W  P      G + GY V Y+              K VE
Sbjct: 2   SPPTNLR--VTDVTSTSVTLSWTPPE--DDGGPITGYVVEYREKGSG-------DWKEVE 50

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
           +    E    + GL P T+Y   VR  N  G+ P SE     T
Sbjct: 51  VTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 12/96 (12%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
            AP  +T     V  T L + W  PP    NG + GY+V Y+            T+    
Sbjct: 1   SAPTNLTVTD--VTSTSLTLSWSPPP---GNGPITGYEVEYR-PVNGGEEWKEITVPGTT 54

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS 252
                     + GL P T+Y + V+  N  G+GP S
Sbjct: 55  ------TSYTLTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|143212 cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 48.9 bits (116), Expect = 6e-08
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 3  SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
          SRY +  + + D +IS L I   +R+DSG  SC A N +G     IQL VQE P+ P
Sbjct: 32 SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPP 88

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 88

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 11/93 (11%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
             P  +      V  T + + W+ PP +   G ++GY V Y+             +    
Sbjct: 2   SPPSNLRVTD--VTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWK-----EVNVTP 54

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG 249
               Y     + GL P T+Y   VR  N  G+G
Sbjct: 55  SSTSY----TLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 20/45 (44%), Positives = 24/45 (53%)

Query: 8  REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
          R  V   G  S L I+NV  +DSGT +C ATN  G+A     L V
Sbjct: 41 RFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 20/45 (44%), Positives = 24/45 (53%)

Query: 8  REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
          R  V   G  S L I+NV  +DSGT +C ATN  G+A     L V
Sbjct: 41 RFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 10 QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
          +V  +G    L I+NV   D G  +C+ATN  G AE + +L V
Sbjct: 48 KVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 4  RYTIREQVLEDGMISELGIANVLRQD-SGTLSCLATNYHGTAEMTIQL 50
          RYT+       G++S L I+N    D   + +C A N  G+    I L
Sbjct: 50 RYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
KOG4221|consensus	1381		99.97
KOG3513|consensus	1051		99.96
KOG3513|consensus	1051		99.93
KOG4221|consensus	1381		99.93
KOG0196|consensus	996		99.9
KOG4222|consensus	1281		99.74
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.45
KOG0196|consensus	996		99.43
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.31
KOG4258|consensus	1025		99.07
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.96
KOG4802|consensus	516		98.9
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.88
KOG4222|consensus	1281		98.84
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.7
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.67
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.51
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	98.46
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.4
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.36
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	98.36
KOG4258|consensus	1025		98.34
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	98.33
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.28
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.26
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.19
KOG4367|consensus	699		98.17
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.15
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.14
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.14
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.11
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.1
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.07
KOG4152|consensus	830		98.06
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.04
KOG3632|consensus	1335		98.04
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.02
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.01
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	97.96
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	97.92
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	97.91
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	97.89
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	97.89
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	97.88
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	97.88
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	97.87
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	97.87
KOG4802|consensus	516		97.85
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	97.85
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	97.84
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	97.84
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	97.82
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	97.81
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	97.8
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	97.78
PHA02826	227	IL-1 receptor-like protein; Provisional	97.77
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	97.77
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	97.77
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	97.77
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	97.76
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	97.72
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	97.7
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	97.7
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.68
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	97.67
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	97.67
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	97.67
KOG4194|consensus	873		97.64
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	97.64
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	97.64
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	97.63
PHA02785	326	IL-beta-binding protein; Provisional	97.63
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	97.63
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	97.62
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	97.62
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	97.62
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	97.61
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	97.61
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	97.6
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	97.6
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	97.55
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	97.55
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	97.55
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	97.55
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	97.53
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	97.5
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	97.49
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	97.48
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	97.46
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	97.45
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	97.45
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	97.43
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.4
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	97.32
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.3
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	97.29
COG4733	952	Phage-related protein, tail component [Function un	97.19
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.12
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	97.11
KOG4194|consensus	873		97.03
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.02
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.01
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.01
KOG4367|consensus	699		96.99
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	96.94
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	96.92
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	96.9
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	96.89
PHA02785	326	IL-beta-binding protein; Provisional	96.89
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	96.88
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	96.85
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	96.83
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	96.82
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	96.81
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	96.8
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	96.78
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	96.78
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	96.77
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	96.75
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	96.73
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	96.72
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	96.68
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	96.68
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	96.67
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	96.66
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	96.65
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	96.65
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	96.62
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	96.59
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	96.56
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	96.53
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	96.5
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.45
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	96.44
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	96.42
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	96.39
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	96.36
PLN02533	427	probable purple acid phosphatase	96.15
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	96.12
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	96.12
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	96.08
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	96.06
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	96.0
smart00408	63	IGc2 Immunoglobulin C-2 Type.	95.92
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	95.9
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	95.89
smart00409	86	IG Immunoglobulin.	95.89
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	95.89
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	95.78
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	95.75
KOG4806|consensus	454		95.74
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	95.69
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	95.63
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	95.62
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	95.53
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	95.51
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	95.33
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	95.26
KOG3632|consensus	1335		95.14
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	95.04
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	95.01
KOG4228|consensus	1087		95.0
PHA03376	221	BARF1; Provisional	94.83
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	94.79
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	94.45
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	94.4
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	94.38
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	94.14
PF00047	64	ig: Immunoglobulin domain The Prosite family only	93.98
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	93.71
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	93.69
smart00406	81	IGv Immunoglobulin V-Type.	93.67
PF09240	99	IL6Ra-bind: Interleukin-6 receptor alpha chain, bi	93.59
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	93.58
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	93.53
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	93.43
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	93.4
KOG4152|consensus	830		93.35
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	93.11
KOG0613|consensus	1205		92.75
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	92.3
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	92.27
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	91.97
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	91.94
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	91.87
PHA02633	63	hypothetical protein; Provisional	91.3
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	90.74
PLN02533	427	probable purple acid phosphatase	90.61
PHA02987	189	Ig domain OX-2-like protein; Provisional	90.25
KOG4806|consensus	454		89.89
TIGR00868	863	hCaCC calcium-activated chloride channel protein 1	89.44
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	89.03
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	88.8
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	87.9
PF09240	99	IL6Ra-bind: Interleukin-6 receptor alpha chain, bi	87.47
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	86.38
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	86.13
KOG3515|consensus	741		85.57
KOG1948|consensus	1165		85.38
PF13754	54	Big_3_4: Bacterial Ig-like domain (group 3)	85.25
KOG3515|consensus	741		84.94
PHA02982	251	hypothetical protein; Provisional	84.92
KOG1378|consensus	452		84.72
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	84.38
PF09423	453	PhoD: PhoD-like phosphatase; InterPro: IPR018946 T	84.24
KOG1225|consensus	525		83.44
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	83.42
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	83.41
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	82.99
TIGR00868	863	hCaCC calcium-activated chloride channel protein 1	82.96
COG4733	952	Phage-related protein, tail component [Function un	82.82
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	81.58
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	81.14
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	80.61
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	80.45

>KOG4221|consensus

Probab=99.97  E-value=9.9e-30  Score=213.17  Aligned_cols=231  Identities=26%  Similarity=0.416  Sum_probs=202.3

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE   97 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~   97 (273)
                      .+..+.++.+..-|.|+|.|.|..|+..++..+.|..+|..|..+.........+.+.|.+|.-+++++.+|.+.+...+
T Consensus       483 ~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~  562 (1381)
T KOG4221|consen  483 IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDD  562 (1381)
T ss_pred             eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCC
Confidence            67889999999999999999999999999999999999987766777788889999999999888999999999999873


Q ss_pred             CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEE
Q psy6638          98 EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIK  177 (273)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~  177 (273)
                      ..     ....+..+.+.++|.+|++.+.|.|+|.|.|..|.|..+..+.+.+..+.|..||.++++..  .++++|.|+
T Consensus       563 ~~-----~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev--~sStsVrVs  635 (1381)
T KOG4221|consen  563 TG-----KELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEV--VSSTSVRVS  635 (1381)
T ss_pred             CC-----ceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEe--cCCCeEEEE
Confidence            21     22355567789999999999999999999999999999999999999999999999999998  899999999


Q ss_pred             EeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEE
Q psy6638         178 WKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA  257 (273)
Q Consensus       178 W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~  257 (273)
                      |.+|.....+|.+.+|+|+|+....+..       ............+.+.+|+|++.|.|+|.|.+..|.|++|++..+
T Consensus       636 W~pP~~~t~ng~itgYkIRy~~~~~~~~-------~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~a  708 (1381)
T KOG4221|consen  636 WLPPPSETQNGQITGYKIRYRKLSREDE-------VNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSA  708 (1381)
T ss_pred             ccCCCcccccceEEEEEEEecccCcccc-------cceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceec
Confidence            9999998889999999999997654321       111223334678899999999999999999999999999999999


Q ss_pred             EcCCC
Q psy6638         258 RTNEG  262 (273)
Q Consensus       258 ~t~~~  262 (273)
                      .|+..
T Consensus       709 eT~~~  713 (1381)
T KOG4221|consen  709 ETPES  713 (1381)
T ss_pred             cCccc
Confidence            99754

>KOG3513|consensus

Probab=99.96  E-value=1.5e-27  Score=200.45  Aligned_cols=237  Identities=30%  Similarity=0.517  Sum_probs=198.6

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC-
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS-   96 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~-   96 (273)
                      ..|.|.++...|.|.|.|.|...+-+..+.+.+.+.++|.||.++.+.......+.|+|.+..+.+++|..|.|+.+.. 
T Consensus       577 g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~  656 (1051)
T KOG3513|consen  577 GRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPF  656 (1051)
T ss_pred             cceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCC
Confidence            4699999999999999999999888888889999999999999999999999999999999888778999999999885 


Q ss_pred             CCCCCCccceEEecCCc---cEEEecCCCCCCeEEEEEEEeCCCCCCCCCcce-EEEecCCCCCCCCeeEEecCCccCCc
Q psy6638          97 EEMWPTQPLKIIVPGSQ---TSATLQPLLPATQYQVRLLAENPLGMSETGAEL-QASTLEEAPNGAPREVTSDPGVVDPT  172 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~-~~~~~~~~p~~~p~~~~~~~~~~~~~  172 (273)
                      ...|....   .++...   .+.++.+|.|...|+|||.|.|..|.|.+|.+. ..+|.+++|...|.++....  ...+
T Consensus       657 ~~~W~~v~---~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g--~~~~  731 (1051)
T KOG3513|consen  657 PGKWKAVT---TVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGG--GSPT  731 (1051)
T ss_pred             CCcceEee---ECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccC--CCCc
Confidence            45787443   222222   246678899999999999999999999988765 77888899999999999988  7899


Q ss_pred             eEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEE--cCCCCccceEEEEEEEecCCCcCC
Q psy6638         173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR--IPGLTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       173 ~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                      .+.|.|+|......||+..+|.|.|+..+...      .|....+.......+.  .....|.+.|+++|+|+|..|.|+
T Consensus       732 eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~------~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp  805 (1051)
T KOG3513|consen  732 ELVITWEPLPEEEQNGPGFGYRVSWRPQGADK------EWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGP  805 (1051)
T ss_pred             eEEEEeccCCHHHccCCCceEEEEEEeCCCCc------ccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCC
Confidence            99999999988778999999999999988752      1233333333233444  444667999999999999999999


Q ss_pred             CCccEEEEcCCCCCc
Q psy6638         251 FSEPFIARTNEGDFL  265 (273)
Q Consensus       251 ~s~~~~~~t~~~~P~  265 (273)
                      .|+.+.+.+.++.|.
T Consensus       806 ~s~~~v~~S~Ed~P~  820 (1051)
T KOG3513|consen  806 ESQVTVGYSGEDEPP  820 (1051)
T ss_pred             CCceEEEEcCCCCCC
Confidence            999999999888764

>KOG3513|consensus

Probab=99.93  E-value=1.2e-23  Score=177.16  Aligned_cols=235  Identities=25%  Similarity=0.354  Sum_probs=189.0

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEE-EEE---ecCCC-CCcceEEEEeeccEEEEEEeCCC--CCCccceEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQ-LLV---QETPE-APKNIRITEESSRSLQISWTAPY--SGNTAITQYII   91 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~-~~~---~~~P~-~p~~~~~~~~~~~~~~l~W~~~~--~~~~~~~~y~v   91 (273)
                      +-.+.+|.|-..|.|+++|.|..|.+..+.. -.+   ...|. .|.++.......+.+.|.|++-.  ..+++-.+|.|
T Consensus       675 sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~V  754 (1051)
T KOG3513|consen  675 SATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRV  754 (1051)
T ss_pred             ceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEE
Confidence            4667899999999999999999998876332 222   45554 78888888888899999999754  35678889999


Q ss_pred             EEEeCCC--CCCCccceEEecCCccE--EEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCC
Q psy6638          92 QYKSSEE--MWPTQPLKIIVPGSQTS--ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPG  167 (273)
Q Consensus        92 ~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~  167 (273)
                      .|+..+.  .|...   ...+.....  +..+...+.+.|.+.|+|.|..|.|..+....+...++.|+.+|..+.+.. 
T Consensus       755 swr~~g~~~~W~~~---~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~-  830 (1051)
T KOG3513|consen  755 SWRPQGADKEWKEV---IVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKP-  830 (1051)
T ss_pred             EEEeCCCCccccee---EecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeec-
Confidence            9999763  67732   222222233  334567789999999999999999999998999999999999999999988 


Q ss_pred             ccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCC
Q psy6638         168 VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVG  247 (273)
Q Consensus       168 ~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g  247 (273)
                       .+.+.+.|+|+++..  .+|.+++|.|+|+..+......     ....+. ...++..|.||++.+.|.|.|+|.|.+|
T Consensus       831 -~s~s~~~v~W~~~~~--~nG~l~gY~v~Y~~~~~~~~~~-----~~~~i~-~~~~~~~ltgL~~~T~Y~~~vrA~nsaG  901 (1051)
T KOG3513|consen  831 -LSSSEVNLSWKPPLW--DNGKLTGYEVKYWKINEKEGSL-----SRVQIA-GNRTSWRLTGLEPNTKYRFYVRAYTSAG  901 (1051)
T ss_pred             -ccCceEEEEecCcCc--cCCccceeEEEEEEcCCCcccc-----cceeec-CCcceEeeeCCCCCceEEEEEEEecCCC
Confidence             899999999999976  4799999999999987653221     122222 4568999999999999999999999999


Q ss_pred             cCCCCccEEEEcCCCCCcc
Q psy6638         248 KGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       248 ~~~~s~~~~~~t~~~~P~~  266 (273)
                      .|+.|..+...|.+.+|+.
T Consensus       902 ~Gp~s~~~~~tt~k~pPs~  920 (1051)
T KOG3513|consen  902 GGPASSEENVTTKKAPPSQ  920 (1051)
T ss_pred             CCCCccceeccccCCCCcc
Confidence            9999999999999998886

>KOG4221|consensus

Probab=99.93  E-value=9.6e-24  Score=177.72  Aligned_cols=228  Identities=30%  Similarity=0.439  Sum_probs=186.4

Q ss_pred             EEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec---------CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE---------TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        20 l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~---------~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      |.|..+...|.|.|.|.+.|..|.....+.+.+..         .|..|..+.+.......+.++|.+|....+.+..|.
T Consensus       383 lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~  462 (1381)
T KOG4221|consen  383 LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYT  462 (1381)
T ss_pred             cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEE
Confidence            99999999999999999999999998877764432         355777777777788899999998887778899999


Q ss_pred             EEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccC
Q psy6638          91 IQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVD  170 (273)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~  170 (273)
                      +.++.....|.+   ............+.+|.+.+.|.|+|.|.|..|.+..+.++.+.+.+..   ++. +....  .+
T Consensus       463 v~~~~~~~~rer---~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEg---p~~-~~a~a--ts  533 (1381)
T KOG4221|consen  463 VFYKVEGDVRER---LQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEG---PVQ-LQAYA--TS  533 (1381)
T ss_pred             EEEecCCchhhh---heeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCC---Ccc-ccccc--cC
Confidence            999998777662   2222233367788999999999999999999999999999999886652   333 66666  78


Q ss_pred             CceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638         171 PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       171 ~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                      +.++.+.|.+|..  .|++|++|.+.|...+..       .+...   ..+...++|.+|++.+.|.|+|.|+|..|.|.
T Consensus       534 ~~ti~v~WepP~~--~n~~I~~yk~~ys~~~~~-------~~~~~---~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~  601 (1381)
T KOG4221|consen  534 PTTILVTWEPPPF--GNGPITGYKLFYSEDDTG-------KELRV---ENNATEYTINGLEKYTEYSIRVVAYNSAGSGV  601 (1381)
T ss_pred             cceEEEEecCCCC--CCCCceEEEEEEEcCCCC-------ceEEE---ecCccEEEeecCCCccceEEEEEEecCCCCCC
Confidence            9999999999986  589999999999987332       11111   22357899999999999999999999999999


Q ss_pred             CCccEEEEcCCCCCcccc
Q psy6638         251 FSEPFIARTNEGDFLFLF  268 (273)
Q Consensus       251 ~s~~~~~~t~~~~P~~~~  268 (273)
                      .|..+.+.|..++|++..
T Consensus       602 sS~~i~V~Tlsd~PsaPP  619 (1381)
T KOG4221|consen  602 SSADITVRTLSDVPSAPP  619 (1381)
T ss_pred             CCCceEEEeccCCCCCCC
Confidence            999999999999887543

>KOG0196|consensus

Probab=99.90  E-value=2.7e-22  Score=163.19  Aligned_cols=221  Identities=24%  Similarity=0.328  Sum_probs=164.6

Q ss_pred             CCCEEEEEEEEcCCCCcee-EEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCCCCC-CCc-
Q psy6638          28 QDSGTLSCLATNYHGTAEM-TIQLLVQETPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEEMW-PTQ-  103 (273)
Q Consensus        28 ~~~~~y~~~a~n~~g~~~~-~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~~~-~~~-  103 (273)
                      ...|.-.|.+.+++.+... ........+|++|.++... ++.+++.|.|.+|.+ ++..-..|.+.++.....- .+. 
T Consensus       303 ~~ega~~C~C~~gyyRA~~Dp~~mpCT~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~  381 (996)
T KOG0196|consen  303 SSEGATSCTCENGYYRADSDPPSMPCTRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEP  381 (996)
T ss_pred             CCCCCCcccccCCcccCCCCCCCCCCCCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCcccc
Confidence            3456667888887766655 5556678899999998544 889999999999975 3334457888777654211 111 


Q ss_pred             --cceEEec----CCccEEEecCCCCCCeEEEEEEEeCCCCCC----CCCcceEEEecCCCCCCCCeeEEecCCccCCce
Q psy6638         104 --PLKIIVP----GSQTSATLQPLLPATQYQVRLLAENPLGMS----ETGAELQASTLEEAPNGAPREVTSDPGVVDPTE  173 (273)
Q Consensus       104 --~~~~~~~----~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~----~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~  173 (273)
                        ......+    ...+++.+.+|.+.+.|+|.|.|+|....-    .....+.+++...+|+ +...++...  .+.++
T Consensus       382 Cg~~V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~--~~~~s  458 (996)
T KOG0196|consen  382 CGDNVRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVS--RTSDS  458 (996)
T ss_pred             CCCCceECCCCCCcccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEee--eccCc
Confidence              0111111    246788999999999999999999976421    2234467777777775 555788887  89999


Q ss_pred             EEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCc
Q psy6638         174 LLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE  253 (273)
Q Consensus       174 i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~  253 (273)
                      ++|+|..|..  ++|.|..|+|.|.+++..+        ..........+..++.+|+|++.|.|+|+|.+..|.|++|.
T Consensus       459 itlsW~~p~~--png~ildYEvky~ek~~~e--------~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~  528 (996)
T KOG0196|consen  459 ITLSWSEPDQ--PNGVILDYEVKYYEKDEDE--------RSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSG  528 (996)
T ss_pred             eEEecCCCCC--CCCcceeEEEEEeeccccc--------cceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCC
Confidence            9999999988  6899999999999986532        12222233357899999999999999999999999999999


Q ss_pred             cEEEEcCCC
Q psy6638         254 PFIARTNEG  262 (273)
Q Consensus       254 ~~~~~t~~~  262 (273)
                      .+.|.|.+.
T Consensus       529 ~~~fqT~~~  537 (996)
T KOG0196|consen  529 KHEFQTLPS  537 (996)
T ss_pred             ceeeeecCc
Confidence            999999876

>KOG4222|consensus

Probab=99.74  E-value=1.2e-16  Score=134.87  Aligned_cols=227  Identities=26%  Similarity=0.426  Sum_probs=171.9

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe---------------cCCCCCcceEEEEeeccEEEEEEeCCCC-C
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ---------------ETPEAPKNIRITEESSRSLQISWTAPYS-G   82 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~---------------~~P~~p~~~~~~~~~~~~~~l~W~~~~~-~   82 (273)
                      .|+|.++.-.|.|.|+|.+.+..|....++.+.+.               ..|++|....+..+..+.++|+|.+... +
T Consensus       475 ~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg  554 (1281)
T KOG4222|consen  475 SLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSG  554 (1281)
T ss_pred             eeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCC
Confidence            79999999999999999999999988877777663               2456676677788889999999998765 5


Q ss_pred             CccceEEEEEEEeC--CCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcc---------------
Q psy6638          83 NTAITQYIIQYKSS--EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAE---------------  145 (273)
Q Consensus        83 ~~~~~~y~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~---------------  145 (273)
                      ..++..|.+++...  +..|...+..    ...+.+.|.+|+|...|.|.|+|.|..|.+.++..               
T Consensus       555 ~vP~s~yiieafs~~~~etw~~ta~~----v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~  630 (1281)
T KOG4222|consen  555 AVPASGYIIEAFSPDLGETWQTTAGR----VKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAG  630 (1281)
T ss_pred             ccccchhHHHHhhhhhcccccccccc----cccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhh
Confidence            66888899988764  3466643332    24577899999999999999999999986655432               


Q ss_pred             --------------------------------------------------------------------------------
Q psy6638         146 --------------------------------------------------------------------------------  145 (273)
Q Consensus       146 --------------------------------------------------------------------------------  145 (273)
                                                                                                      
T Consensus       631 ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p  710 (1281)
T KOG4222|consen  631 ADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKP  710 (1281)
T ss_pred             hhHHHHHHhhcccceeeccccccchhheeeeeeeecccCcccccceEEEeccCccccccccccceeccCCcceeccccCC
Confidence                                                                                            


Q ss_pred             -------------------------eEEEecCCCCCCCCeeE---EecCCccCCceEEEEEeCCCCCCccceeeeEEEEE
Q psy6638         146 -------------------------LQASTLEEAPNGAPREV---TSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY  197 (273)
Q Consensus       146 -------------------------~~~~~~~~~p~~~p~~~---~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~  197 (273)
                                               ..+.+....|..+|..+   ....  ...+++.|+|.++.....++.+.+|.|+.
T Consensus       711 ~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~--~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~  788 (1281)
T KOG4222|consen  711 GTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGS--YNGTAGSVSWAPPPADVQNGILQGYKIEC  788 (1281)
T ss_pred             CccceeeccCccCCCcceecCCcccccccccccCCCCCCCCcccccccc--CCCceeeEEecCCcccccCCcccceeEEe
Confidence                                     11223335566677764   3333  46678999999998877899999999998


Q ss_pred             EEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEE
Q psy6638         198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIAR  258 (273)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~  258 (273)
                      ...+..       .++.....+....+.+|.+|.++..|.|++.+.+..|.|..++.....
T Consensus       789 ~~~e~t-------r~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~~  842 (1281)
T KOG4222|consen  789 SGGEKT-------RIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPIV  842 (1281)
T ss_pred             ecCccc-------cccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeeee
Confidence            765421       122333334556789999999999999999999999999877665443

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.45  E-value=9.2e-13  Score=82.35  Aligned_cols=84  Identities=36%  Similarity=0.629  Sum_probs=67.5

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++++..  .+.+++.|.|+++..  .++.+.+|.|+|+..++..      .......... ...++|.+|.|++.|.
T Consensus         2 ~P~~l~v~~--~~~~sv~v~W~~~~~--~~~~~~~y~v~~~~~~~~~------~~~~~~~~~~-~~~~~i~~L~p~t~Y~   70 (85)
T PF00041_consen    2 APENLSVSN--ISPTSVTVSWKPPSS--GNGPITGYRVEYRSVNSTS------DWQEVTVPGN-ETSYTITGLQPGTTYE   70 (85)
T ss_dssp             SSEEEEEEE--ECSSEEEEEEEESSS--TSSSESEEEEEEEETTSSS------EEEEEEEETT-SSEEEEESCCTTSEEE
T ss_pred             cCcCeEEEE--CCCCEEEEEEECCCC--CCCCeeEEEEEEEecccce------eeeeeeeeee-eeeeeeccCCCCCEEE
Confidence            577899988  899999999999973  3788999999999887653      1222222232 4589999999999999


Q ss_pred             EEEEEecCCCcCCCC
Q psy6638         238 IVVRGYNSVGKGPFS  252 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s  252 (273)
                      |+|+|++..|.|++|
T Consensus        71 ~~v~a~~~~g~g~~S   85 (85)
T PF00041_consen   71 FRVRAVNSDGEGPPS   85 (85)
T ss_dssp             EEEEEEETTEEEEEE
T ss_pred             EEEEEEeCCcCcCCC
Confidence            999999999988764

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>KOG0196|consensus

Probab=99.43  E-value=7.9e-12  Score=103.25  Aligned_cols=144  Identities=22%  Similarity=0.324  Sum_probs=112.2

Q ss_pred             eeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCce------eEEEEEE-ecCCCCCcceEEEEeeccEEEEEE
Q psy6638           4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE------MTIQLLV-QETPEAPKNIRITEESSRSLQISW   76 (273)
Q Consensus         4 r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~------~~~~~~~-~~~P~~p~~~~~~~~~~~~~~l~W   76 (273)
                      ||..+...+.+.   ...|.+|.+...|.|.+.|.|+...-.      ..+.+.. +..|.+...++....+.++++|+|
T Consensus       387 ~f~P~q~gLt~~---~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW  463 (996)
T KOG0196|consen  387 RFTPRQRGLTET---SVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSW  463 (996)
T ss_pred             eECCCCCCcccc---eEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEec
Confidence            455555555444   799999999999999999999764322      1333333 466777778888999999999999


Q ss_pred             eCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCC
Q psy6638          77 TAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE  153 (273)
Q Consensus        77 ~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~  153 (273)
                      ..|...++.+..|+|.|.+....-.   .........++.++.+|.|++.|.|+|+|....|.|..+....+.|...
T Consensus       464 ~~p~~png~ildYEvky~ek~~~e~---~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~  537 (996)
T KOG0196|consen  464 SEPDQPNGVILDYEVKYYEKDEDER---SYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS  537 (996)
T ss_pred             CCCCCCCCcceeEEEEEeecccccc---ceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence            9998888899999999998753111   1123334567889999999999999999999999999999999988654

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.31  E-value=2.8e-11  Score=75.57  Aligned_cols=84  Identities=36%  Similarity=0.578  Sum_probs=68.4

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      .+|.++.+.....+++.|.|.++....+.+.+|.|++.......  .............+.+.+|.|++.|.|+|+|.+.
T Consensus         1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~   78 (85)
T PF00041_consen    1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTS--DWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNS   78 (85)
T ss_dssp             SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSS--EEEEEEEETTSSEEEEESCCTTSEEEEEEEEEET
T ss_pred             CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccce--eeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeC
Confidence            36889999999999999999988766778999999999876542  1223445556668999999999999999999999


Q ss_pred             CCCCCC
Q psy6638         137 LGMSET  142 (273)
Q Consensus       137 ~g~~~~  142 (273)
                      .|.|.+
T Consensus        79 ~g~g~~   84 (85)
T PF00041_consen   79 DGEGPP   84 (85)
T ss_dssp             TEEEEE
T ss_pred             CcCcCC
Confidence            887654

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>KOG4258|consensus

Probab=99.07  E-value=2.9e-09  Score=88.80  Aligned_cols=230  Identities=21%  Similarity=0.341  Sum_probs=141.7

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcC--CCCce-eEEEE-EE---ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNY--HGTAE-MTIQL-LV---QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~--~g~~~-~~~~~-~~---~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      ...+.+|.|.+.|.|.+.+...  .+... +...+ -+   ...|++|..+-..+..++.+.|.|.+|..+++.++.|.+
T Consensus       567 ~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv  646 (1025)
T KOG4258|consen  567 GFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLV  646 (1025)
T ss_pred             ceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEE
Confidence            4778899999999999987632  22211 21111 12   356777777656666677899999999999999999999


Q ss_pred             EEEeCCC-------------------------CCCCcc----------------------c------------------e
Q psy6638          92 QYKSSEE-------------------------MWPTQP----------------------L------------------K  106 (273)
Q Consensus        92 ~~~~~~~-------------------------~~~~~~----------------------~------------------~  106 (273)
                      .|.....                         .|+...                      .                  .
T Consensus       647 ~wer~~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~  726 (1025)
T KOG4258|consen  647 VWERQAEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEGHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNA  726 (1025)
T ss_pred             EEEeccCCchHHHhccccccccccccccCCCCchhhcchhhhhccCCCCCCCCCcccccCchhhHHHHHHHHHhhhccce
Confidence            9964311                         000000                      0                  0


Q ss_pred             EEec------------------------------------------------CCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638         107 IIVP------------------------------------------------GSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus       107 ~~~~------------------------------------------------~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      ...+                                                .+..++.+.+|+..+.|.+.++|+|..+
T Consensus       727 i~vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~  806 (1025)
T KOG4258|consen  727 IFVPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHAT  806 (1025)
T ss_pred             eeecccCcccccccccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhcccc
Confidence            0000                                                0011345677888888999999988776


Q ss_pred             C----CCCCcceEEEecCCC-CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeee
Q psy6638         139 M----SETGAELQASTLEEA-PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK  213 (273)
Q Consensus       139 ~----~~~s~~~~~~~~~~~-p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~  213 (273)
                      .    |.. ..+..+|.+.. ....|.-+....- ...+.+.|+|.+|..  ++|.|.+|.|.|+..+.+....   -..
T Consensus       807 ~~~~cS~a-~~v~~RT~~~~~aD~i~g~v~we~~-~~~~~v~l~w~EP~~--pNGli~~Y~Vk~r~~~~et~v~---cvs  879 (1025)
T KOG4258|consen  807 PKCGCSHA-AFVFARTMPTMGADDIPGPVTWECH-IEMNSVILRWLEPKE--PNGLILNYEVKYRRNGDETHVE---CVS  879 (1025)
T ss_pred             cccccchh-hhhhhccccccccccCCCceeEecc-cCcceEEEecCCCCC--CCccEEEEEEEEeeccCcchhh---hhh
Confidence            4    211 11223332211 1112222222220 278899999999988  7999999999999776542100   000


Q ss_pred             eEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEE
Q psy6638         214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIAR  258 (273)
Q Consensus       214 ~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~  258 (273)
                      ..  .-.+...+.+..|.+| .|.++|+|-.-+|.|+|.+...|.
T Consensus       880 R~--~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~  921 (1025)
T KOG4258|consen  880 RM--DYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFY  921 (1025)
T ss_pred             hh--hhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceE
Confidence            00  1112345677888877 899999999999999987765543

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.96  E-value=1.5e-08  Score=63.81  Aligned_cols=90  Identities=29%  Similarity=0.501  Sum_probs=64.2

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++.+..  ....++.|.|.++...  ++.+.+|.|++......       .+............+.+.+|.|++.|.
T Consensus         3 ~p~~~~~~~--~~~~~~~v~W~~~~~~--~~~~~~y~v~~~~~~~~-------~~~~~~~~~~~~~~~~i~~l~p~~~Y~   71 (93)
T cd00063           3 PPTNLRVTD--VTSTSVTLSWTPPEDD--GGPITGYVVEYREKGSG-------DWKEVEVTPGSETSYTLTGLKPGTEYE   71 (93)
T ss_pred             CCCCcEEEE--ecCCEEEEEECCCCCC--CCcceeEEEEEeeCCCC-------CCEEeeccCCcccEEEEccccCCCEEE
Confidence            444566665  6679999999998652  25677999999876422       122222221245789999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEE
Q psy6638         238 IVVRGYNSVGKGPFSEPFIAR  258 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~  258 (273)
                      |+|++.+..|.|.++....+.
T Consensus        72 ~~v~a~~~~~~~~~s~~~~~~   92 (93)
T cd00063          72 FRVRAVNGGGESPPSESVTVT   92 (93)
T ss_pred             EEEEEECCCccCCCccccccc
Confidence            999999988888777644443

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>KOG4802|consensus

Probab=98.90  E-value=2.1e-08  Score=76.93  Aligned_cols=127  Identities=17%  Similarity=0.259  Sum_probs=83.8

Q ss_pred             cEEEecCCCCCCeEEEEEEEeCCCC---CCCCCcceEEEecCCCCCCCCeeEEecCCc-cCCceEEEEEeCCCCCCccce
Q psy6638         114 TSATLQPLLPATQYQVRLLAENPLG---MSETGAELQASTLEEAPNGAPREVTSDPGV-VDPTELLIKWKAPPRESWNGV  189 (273)
Q Consensus       114 ~~~~~~~l~~~~~y~~~v~a~~~~g---~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~-~~~~~i~l~W~~~~~~~~~~~  189 (273)
                      ..+...+++||..|.|+|.|+|..|   .+.++......-.+.+|+ +|.++++...+ .+.-...|.|-|+..   +-+
T Consensus       209 ~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~P~~s---dlP  284 (516)
T KOG4802|consen  209 NTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWCPSKS---DLP  284 (516)
T ss_pred             ceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeCCCCC---CCc
Confidence            3567788999999999999999876   455565555554444554 67777765410 233346688888775   568


Q ss_pred             eeeEEEEEEEcCC--CCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638         190 LLGYDVGYQISSG--SSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       190 i~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                      +.+|.|.|..--.  ...+...   .....   .+..+.|.+|.|+..|.|.|+|+...|.+.
T Consensus       285 v~~Yki~Ws~~v~s~k~~m~tk---s~~~k---~thq~si~~L~Pns~Y~VevqAi~y~g~~r  341 (516)
T KOG4802|consen  285 VEKYKITWSLYVNSAKASMITK---SSYVK---DTHQFSIKELLPNSSYYVEVQAISYLGSRR  341 (516)
T ss_pred             ceeeEEEeehhhhhhhhhcccc---cceee---ccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence            9999999875421  1101100   01110   122455999999999999999999877654

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.88  E-value=1.4e-08  Score=63.42  Aligned_cols=57  Identities=44%  Similarity=0.632  Sum_probs=47.7

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP   59 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p   59 (273)
                      .||.+..........++|.|.++...|.|.|+|.|.|..|.....+.|.+..+|.+|
T Consensus        32 ~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~~P   88 (88)
T cd05735          32 SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPP   88 (88)
T ss_pred             CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCCCC
Confidence            356555433344556789999999999999999999999999999999999999887

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>KOG4222|consensus

Probab=98.84  E-value=1.2e-08  Score=87.82  Aligned_cols=217  Identities=18%  Similarity=0.159  Sum_probs=129.4

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec---CCCCCcceEEEEeec----cEEEEEEeCCCCCCccceEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE---TPEAPKNIRITEESS----RSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~---~P~~p~~~~~~~~~~----~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      .|.|+++.+.|.|.|.|...+..|+......+.+..   --.||..+.....+.    .+...-|-.. .+. +  .+.+
T Consensus       377 ~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~a-tg~-P--~p~i  452 (1281)
T KOG4222|consen  377 TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSA-TGA-P--TPNI  452 (1281)
T ss_pred             CcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhh-hCC-C--CCCc
Confidence            799999999999999999999888876644443321   112332222211110    1111122110 010 1  1223


Q ss_pred             EEEeCCC---CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEec-----------CCCCCC
Q psy6638          92 QYKSSEE---MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL-----------EEAPNG  157 (273)
Q Consensus        92 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~-----------~~~p~~  157 (273)
                      .|...+-   .|.. ....   ....+.++.+|.....|.|.+.|.+..|.+.|+..+.+.-.           ...-+.
T Consensus       453 ~wl~dg~~v~~~d~-~~s~---~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS  528 (1281)
T KOG4222|consen  453 SWLKDGCNVMNPDS-RISQ---QEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPS  528 (1281)
T ss_pred             hhhhcccccccCCc-ccce---eeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCC
Confidence            3332221   1110 0001   12245677788888889999999999998888776533211           111123


Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|..-.+..  .+.++++|+|.+..... .+++.+|.+++....-.+      .|.... .....+.+.|.+|+|+..|.
T Consensus       529 ~p~~p~v~~--v~~~~v~LsW~~~s~sg-~vP~s~yiieafs~~~~e------tw~~ta-~~v~~t~~~I~gL~P~~syl  598 (1281)
T KOG4222|consen  529 PPGTPGVVN--VSRTSVTLSWQPTSPSG-AVPASGYIIEAFSPDLGE------TWQTTA-GRVKTTTYAIRGLKPNLSYL  598 (1281)
T ss_pred             CCCCCcccc--CCCceEEecccCCCCCC-ccccchhHHHHhhhhhcc------cccccc-cccccceeeecCcCccceee
Confidence            444444555  68889999999987632 457889999987654322      111111 12235789999999999999


Q ss_pred             EEEEEecCCCcCCCCc
Q psy6638         238 IVVRGYNSVGKGPFSE  253 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~  253 (273)
                      |.|+|.|..|.+.++.
T Consensus       599 f~vRa~n~~Gis~Ps~  614 (1281)
T KOG4222|consen  599 FLVRAENEQGISDPST  614 (1281)
T ss_pred             eeeeccccccccCCcc
Confidence            9999999999877653

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.70  E-value=8.4e-07  Score=55.68  Aligned_cols=85  Identities=38%  Similarity=0.649  Sum_probs=61.7

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccceEEec-CCccEEEecCCCCCCeEEEEEEE
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVP-GSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      |.+|.++.+......++.+.|.++......+..|.+.+.... ..|.    ..... .....+.+.+|.|++.|.++|++
T Consensus         1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~----~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a   76 (93)
T cd00063           1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWK----EVEVTPGSETSYTLTGLKPGTEYEFRVRA   76 (93)
T ss_pred             CcCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCE----EeeccCCcccEEEEccccCCCEEEEEEEE
Confidence            446667777777789999999987544346778999998754 2232    11111 25678889999999999999999


Q ss_pred             eCCCCCCCCCc
Q psy6638         134 ENPLGMSETGA  144 (273)
Q Consensus       134 ~~~~g~~~~s~  144 (273)
                      .+..|.+.++.
T Consensus        77 ~~~~~~~~~s~   87 (93)
T cd00063          77 VNGGGESPPSE   87 (93)
T ss_pred             ECCCccCCCcc
Confidence            98877766554

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.67  E-value=1.1e-07  Score=60.64  Aligned_cols=47  Identities=21%  Similarity=0.340  Sum_probs=43.5

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP   59 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p   59 (273)
                      ..+..+.|.|.++.+.|.|.|+|.|.|.+|...+.+.+.+..+|.+|
T Consensus        51 ~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          51 NTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             ecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence            34567799999999999999999999999999999999999999988

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.51  E-value=5.7e-07  Score=55.71  Aligned_cols=40  Identities=30%  Similarity=0.468  Sum_probs=37.2

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      ...|.|.+++..|.|.|+|.|.|..|...+.+.+.+.++|
T Consensus        46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P   85 (85)
T cd05854          46 IGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP   85 (85)
T ss_pred             EeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence            4589999999999999999999999999999999998876

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>smart00060 FN3 Fibronectin type 3 domain

Probab=98.46  E-value=2.6e-06  Score=51.96  Aligned_cols=77  Identities=29%  Similarity=0.566  Sum_probs=49.4

Q ss_pred             eEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEE
Q psy6638         161 EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVV  240 (273)
Q Consensus       161 ~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v  240 (273)
                      ++.+..  ....++.|.|+++...  + . .+|.+.|........  .  .+........ ...+.+.+|.+++.|.|+|
T Consensus         6 ~~~~~~--~~~~~~~v~W~~~~~~--~-~-~~y~~~~~~~~~~~~--~--~~~~~~~~~~-~~~~~i~~L~~~~~Y~v~v   74 (83)
T smart00060        6 NLRVTD--VTSTSVTLSWEPPPDD--G-I-TGYIVGYRVEYREEG--S--SWKEVNVTPS-STSYTLTGLKPGTEYEFRV   74 (83)
T ss_pred             cEEEEE--EeCCEEEEEECCCCCC--C-C-CccEEEEEEEEecCC--C--ccEEEEecCC-ccEEEEeCcCCCCEEEEEE
Confidence            455554  5566999999977652  1 1 577777765533211  0  1111211111 4689999999999999999


Q ss_pred             EEecCCCc
Q psy6638         241 RGYNSVGK  248 (273)
Q Consensus       241 ~a~n~~g~  248 (273)
                      +|.+..|.
T Consensus        75 ~a~~~~g~   82 (83)
T smart00060       75 RAVNGAGE   82 (83)
T ss_pred             EEEcccCC
Confidence            99987553

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.40  E-value=8.7e-07  Score=54.49  Aligned_cols=39  Identities=18%  Similarity=0.383  Sum_probs=36.9

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      ..|.|.+++..|.|.|+|.|.|..+....++.+.|.++|
T Consensus        47 ~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP   85 (85)
T cd05853          47 GDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP   85 (85)
T ss_pred             CcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence            379999999999999999999999999999999999887

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.36  E-value=1.6e-06  Score=53.81  Aligned_cols=40  Identities=23%  Similarity=0.381  Sum_probs=36.8

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      ...|.|.+++..|.|.|+|.|.|..|.....+.+.+.++|
T Consensus        46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP   85 (85)
T cd04970          46 NGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP   85 (85)
T ss_pred             cceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence            4479999999999999999999999999999999998876

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>smart00060 FN3 Fibronectin type 3 domain

Probab=98.36  E-value=1.5e-05  Score=48.47  Aligned_cols=79  Identities=34%  Similarity=0.492  Sum_probs=50.3

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCC
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL  137 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~  137 (273)
                      +|.++.+......++.++|.++.....  ..|.+.+......-...............+.+.+|.+++.|.|+|+|.+..
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~   80 (83)
T smart00060        3 PPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA   80 (83)
T ss_pred             CCCcEEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEccc
Confidence            445566666667799999997643322  567777765432100001112222224688999999999999999999865


Q ss_pred             C
Q psy6638         138 G  138 (273)
Q Consensus       138 g  138 (273)
                      |
T Consensus        81 g   81 (83)
T smart00060       81 G   81 (83)
T ss_pred             C
Confidence            4

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>KOG4258|consensus

Probab=98.34  E-value=1.3e-05  Score=67.77  Aligned_cols=132  Identities=24%  Similarity=0.383  Sum_probs=88.6

Q ss_pred             EEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCC---------------CCCCCccceEEec------CCccEEEecCC
Q psy6638          64 ITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSE---------------EMWPTQPLKIIVP------GSQTSATLQPL  121 (273)
Q Consensus        64 ~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~---------------~~~~~~~~~~~~~------~~~~~~~~~~l  121 (273)
                      ....+..++.++|..-.. +-....+|.+.|++..               ..|...  .+..+      .....+.+.+|
T Consensus       496 ~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~--~v~~~~~~p~~~~~~~~~l~~L  573 (1025)
T KOG4258|consen  496 STVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVV--DVDPPDLIPNDGTHPGFLLDGL  573 (1025)
T ss_pred             eEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEE--eccCCcCCCccccccceehhcC
Confidence            344567889999985432 2235678999998642               112210  00111      12225678999


Q ss_pred             CCCCeEEEEEEEeCC--CCC--CCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEE
Q psy6638         122 LPATQYQVRLLAENP--LGM--SETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY  197 (273)
Q Consensus       122 ~~~~~y~~~v~a~~~--~g~--~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~  197 (273)
                      +|+++|-+-|++...  .+.  ...|.-..++|....|. ||..+-...  .+++.|.|.|++|..  +||.++.|.|.|
T Consensus       574 kP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~s--nsSsqi~l~W~pP~~--pNG~lt~Ylv~w  648 (1025)
T KOG4258|consen  574 KPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKS--NSSSQILLKWKPPSQ--PNGNLTHYLVVW  648 (1025)
T ss_pred             CccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-Ccchhhhcc--CcchheeEEecCCCC--CCCceeEEEEEE
Confidence            999999999998632  221  12355567888888775 776666655  567799999999988  799999999999


Q ss_pred             EEcCC
Q psy6638         198 QISSG  202 (273)
Q Consensus       198 ~~~~~  202 (273)
                      +....
T Consensus       649 er~~~  653 (1025)
T KOG4258|consen  649 ERQAE  653 (1025)
T ss_pred             EeccC
Confidence            87654

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=98.33  E-value=0.00064  Score=51.84  Aligned_cols=249  Identities=14%  Similarity=0.118  Sum_probs=124.6

Q ss_pred             eeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCC-CCcee-EEEEEEe--cCCCCCcceE-----EEEeec-c-EE
Q psy6638           4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYH-GTAEM-TIQLLVQ--ETPEAPKNIR-----ITEESS-R-SL   72 (273)
Q Consensus         4 r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~-g~~~~-~~~~~~~--~~P~~p~~~~-----~~~~~~-~-~~   72 (273)
                      ||..-..++ .|..+.+.|.+|.++..|.|.+.+.|.. |.+.+ .......  .....|..++     ...... . .-
T Consensus         2 r~~~~~~vC-vg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~   80 (300)
T PF10179_consen    2 RYADCQIVC-VGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFK   80 (300)
T ss_pred             cceeEEEEE-cCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCcee
Confidence            443333333 3445688899999999999999999863 33333 1111121  2222332221     111111 1 23


Q ss_pred             EEEEeCCC-CCCccceEEEEEEEeCCCCCC----CccceEEe---cCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCc
Q psy6638          73 QISWTAPY-SGNTAITQYIIQYKSSEEMWP----TQPLKIIV---PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGA  144 (273)
Q Consensus        73 ~l~W~~~~-~~~~~~~~y~v~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~  144 (273)
                      ..++..|. ........+.+  ...++...    ........   -..-..+.+.++.|+..|.+++.+.+... +....
T Consensus        81 ~f~f~vP~~~~~~~~~~l~v--~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~  157 (300)
T PF10179_consen   81 FFSFKVPKRSSTHQSLWLFV--QSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTF  157 (300)
T ss_pred             EEEEcCCcCCCCCccEEEEE--EeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCC-CceEE
Confidence            34555441 11111111212  12121100    00000000   01234678899999999999998766433 11111


Q ss_pred             ceE-EEecCCCC--CCCCeeEEecC--CccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCC--C------c------
Q psy6638         145 ELQ-ASTLEEAP--NGAPREVTSDP--GVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGS--S------L------  205 (273)
Q Consensus       145 ~~~-~~~~~~~p--~~~p~~~~~~~--~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~--~------~------  205 (273)
                      -+. ..+.....  |.-|.+..+..  .-.+-++++|.|.+..+.    . ..|-|+.+...+.  .      .      
T Consensus       158 kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~----~-~kYCvy~~~~~~~~~~~~~~~~~n~C~~~  232 (300)
T PF10179_consen  158 KVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDR----S-IKYCVYRREEHSNYQERSVSRMPNQCLGP  232 (300)
T ss_pred             EEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCC----C-ceEEEEEEEecCchhhhhhcccCccCCCC
Confidence            122 22222211  23444444432  003457999999997762    1 5788888765443  0      0      


Q ss_pred             c-ceeeeeeeE-Eec--------CCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         206 A-LSSYTLKSV-ELD--------NQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       206 ~-~~~~~~~~~-~~~--------~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      + ........+ ...        ...-...+|.+|+||+.|.|.|.+.-..|.+-+-....+.|..
T Consensus       233 ~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~sl~Y~s~~VkTr~  298 (300)
T PF10179_consen  233 ESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQSLPYRSKWVKTRR  298 (300)
T ss_pred             CccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEecCCCceeecceEEEEecC
Confidence            0 000000111 011        1112345899999999999999999877776555556666643

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.28  E-value=5.2e-06  Score=54.06  Aligned_cols=41  Identities=34%  Similarity=0.462  Sum_probs=36.9

Q ss_pred             EEEEEEeeee-eCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          17 ISELGIANVL-RQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        17 ~~~l~i~~~~-~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      .+.|.|.++. ..|.|.|+|.|.|.+|.....+.|.+..+|+
T Consensus        68 ~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p~  109 (109)
T cd05773          68 TSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRPD  109 (109)
T ss_pred             eeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCCC
Confidence            5789999997 5899999999999999999999999888774

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.26  E-value=4.7e-06  Score=52.69  Aligned_cols=49  Identities=33%  Similarity=0.521  Sum_probs=43.7

Q ss_pred             cceeEEEEEEecCCcEEEEEEeeeeeCC-CEEEEEEEEcCCCCceeEEEE
Q psy6638           2 FSRYTIREQVLEDGMISELGIANVLRQD-SGTLSCLATNYHGTAEMTIQL   50 (273)
Q Consensus         2 ~~r~~~~~~~~~~~~~~~l~i~~~~~~~-~~~y~~~a~n~~g~~~~~~~~   50 (273)
                      ++||.+......++..+.|.|.++...| .|.|.|.|.|.+|.....+.|
T Consensus        48 ~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          48 SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence            4799999988889999999999998877 689999999999999877665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.19  E-value=7.9e-06  Score=49.15  Aligned_cols=36  Identities=33%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ..+|.|.++.++|.|.|+|.|.|..|.....+.|.|
T Consensus        40 ~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892          40 RVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             cEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            358999999999999999999999999988877653

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>KOG4367|consensus

Probab=98.17  E-value=4.1e-06  Score=65.22  Aligned_cols=82  Identities=23%  Similarity=0.443  Sum_probs=65.9

Q ss_pred             cCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCc
Q psy6638         169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK  248 (273)
Q Consensus       169 ~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~  248 (273)
                      ...++++|+|+.|+..  ..+..+|.++.-..++.       .++++...+  .+..++++|.-++.|..+|.++|..|.
T Consensus       450 t~nns~t~~wkqp~~~--~~~~dg~~leld~g~~g-------~frevy~g~--etmctvdglhfns~y~arvka~n~tg~  518 (699)
T KOG4367|consen  450 THNNSATLSWKQPPLS--TVPADGYILELDDGNGG-------QFREVYVGK--ETMCTVDGLHFNSTYNARVKAFNKTGV  518 (699)
T ss_pred             ccCCceEEEeecCCCC--CCCCcceEEEeecCCCC-------ceeEEEecC--ceeEEecceecchhHHHHHHHhhccCC
Confidence            4578999999976652  45778999998776543       355555433  579999999999999999999999999


Q ss_pred             CCCCccEEEEcCC
Q psy6638         249 GPFSEPFIARTNE  261 (273)
Q Consensus       249 ~~~s~~~~~~t~~  261 (273)
                      +++|+.+..+|.+
T Consensus       519 s~ys~tl~lqts~  531 (699)
T KOG4367|consen  519 SPYSKTLVLQTSE  531 (699)
T ss_pred             CcccceeEeeecc
Confidence            9999988887765

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.15  E-value=1.1e-05  Score=51.52  Aligned_cols=37  Identities=30%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      +....|.|.++.++|.|.|.|.|.|..|.....+.|.
T Consensus        61 ~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   97 (98)
T cd05870          61 HGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD   97 (98)
T ss_pred             CCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEe
Confidence            3456899999999999999999999999988877664

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.14  E-value=9.7e-06  Score=48.79  Aligned_cols=36  Identities=28%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .+.|.|.++.++|.|.|+|.|.|..|.....+.|.+
T Consensus        40 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893          40 YICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             EEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            457999999999999999999999999988877653

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.14  E-value=1.2e-05  Score=48.30  Aligned_cols=39  Identities=31%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .+..+.|.|.++.+.|.|.|+|.|.|..|.....+.+.+
T Consensus        36 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748          36 TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            455778999999999999999999999999888776653

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.11  E-value=8.3e-06  Score=48.81  Aligned_cols=33  Identities=36%  Similarity=0.538  Sum_probs=30.6

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      .|.|.++.++|.|.|+|.|.|..|.......+.
T Consensus        40 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852          40 SLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             EEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            699999999999999999999999998887765

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.10  E-value=1.5e-05  Score=49.41  Aligned_cols=39  Identities=23%  Similarity=0.239  Sum_probs=33.8

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .+..+.|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus        48 ~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   86 (86)
T cd05894          48 YKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV   86 (86)
T ss_pred             cCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence            445678999999999999999999999999888776653

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.07  E-value=2e-05  Score=50.25  Aligned_cols=39  Identities=26%  Similarity=0.383  Sum_probs=33.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ....+.|.|.++..+|.|.|+|.|.|..|.....+.+.+
T Consensus        59 ~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          59 HARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             CccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence            345578999999999999999999999999988777653

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>KOG4152|consensus

Probab=98.06  E-value=4.5e-05  Score=61.23  Aligned_cols=129  Identities=17%  Similarity=0.254  Sum_probs=83.4

Q ss_pred             cCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEE
Q psy6638         119 QPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQ  198 (273)
Q Consensus       119 ~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~  198 (273)
                      ..|.+|..|.|+|.|+|..|.+.++....+.+....-|..|..+.+..   +-..+++.|.+|.... .|.|+.|..+..
T Consensus       652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k---~~eGi~l~weppt~p~-sg~Iieys~ylA  727 (830)
T KOG4152|consen  652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKK---TIEGISLVWEPPTKPG-SGTIIEYSPYLA  727 (830)
T ss_pred             cccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccc---cccceeecccCCCCCC-CcceEEeehhhH
Confidence            568899999999999999999999998888886554445666666655   6678999999998754 667888887653


Q ss_pred             EcCCCCc-cceeeeeeeEE--------ecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCC
Q psy6638         199 ISSGSSL-ALSSYTLKSVE--------LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS  252 (273)
Q Consensus       199 ~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s  252 (273)
                      -....-. ......+....        ...+. .---+.+...+-.-.|+|.|.|.+|.|+..
T Consensus       728 i~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~-l~tA~~d~t~~paivfri~aknekGyGpat  789 (830)
T KOG4152|consen  728 IITQAGATGVSQLPFMRSYCGIITTCVVTSGK-LITAVPDITTGPAIVFRIVAKNEKGYGPAT  789 (830)
T ss_pred             hhhhhhccCccccceeeeecccceeeEEeccc-ceeeccccccCcceEEEEEecCCCCCCcce
Confidence            3211000 00000011111        11111 111122344466789999999999999754

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.04  E-value=2.5e-05  Score=48.95  Aligned_cols=38  Identities=32%  Similarity=0.392  Sum_probs=34.8

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      .|.|.++.++|.|.|.|.|.|..|.....+.+.|....
T Consensus        48 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~   85 (90)
T cd05726          48 DLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVI   85 (90)
T ss_pred             eEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeecc
Confidence            69999999999999999999999999888888887654

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>KOG3632|consensus

Probab=98.04  E-value=7.2e-05  Score=64.39  Aligned_cols=198  Identities=24%  Similarity=0.330  Sum_probs=124.6

Q ss_pred             CEEEEEEEEcCCCCcee-EEEEEE-ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceE
Q psy6638          30 SGTLSCLATNYHGTAEM-TIQLLV-QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKI  107 (273)
Q Consensus        30 ~~~y~~~a~n~~g~~~~-~~~~~~-~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~  107 (273)
                      .|...+.+....|+... ...+.+ ...+..|.++++...+..+..++|-+...   ...  .+.|......       .
T Consensus       644 s~~isvq~ltSrGsqd~lrc~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~ns---n~~--Hviyln~eE~-------~  711 (1335)
T KOG3632|consen  644 SGYISVQRLTSRGSQDQLRCILLVGGAAPVVPSQLRVWNATQTSAMITWVPFNS---NFL--HVIYLNAEEP-------R  711 (1335)
T ss_pred             ceeeehhhhhccCCCCcceeeEeccccccccchhhhhhhhhchhhheeeeecCC---Ccc--eeeecCCccC-------C
Confidence            44445556667777655 333333 56678999999999999999999986532   111  2222222111       0


Q ss_pred             EecCCccEEEecCCCCCCeEEEEEEEeCC-CC--------CCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEE
Q psy6638         108 IVPGSQTSATLQPLLPATQYQVRLLAENP-LG--------MSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKW  178 (273)
Q Consensus       108 ~~~~~~~~~~~~~l~~~~~y~~~v~a~~~-~g--------~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W  178 (273)
                      ........+++.+|.|++.|..+|.+... .+        ++.-..++.|.|..+.|+.||.+|++..+ .++..+.++|
T Consensus       712 ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g-~spg~l~vsw  790 (1335)
T KOG3632|consen  712 PSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETG-GSPGRLEVSW  790 (1335)
T ss_pred             CchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecC-CCCceeeeec
Confidence            11123345677899999999999988654 11        23335568899999999999999999873 5788899999


Q ss_pred             eCCCCCC---ccc-eeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc-ceEEEEEEEecCCCcCC
Q psy6638         179 KAPPRES---WNG-VLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY-TKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       179 ~~~~~~~---~~~-~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~-~~Y~~~v~a~n~~g~~~  250 (273)
                      .|+.-+.   .|| .+++|.|+....          .+.++.......+.+.+..|+.+ ..-.|.|+.....|++-
T Consensus       791 rPptldsag~sngv~vtgYavyadgq----------kv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesv  857 (1335)
T KOG3632|consen  791 RPPTLDSAGCSNGVAVTGYAVYADGQ----------KVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESV  857 (1335)
T ss_pred             cCceeccccccCceeeeeeeeeeCCc----------eeeeeecccCCceEEEeeeehhhheecceeEEecccCcccc
Confidence            9986532   233 678999987522          22333333333345555556553 23346677666666653

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.02  E-value=2.5e-05  Score=49.87  Aligned_cols=48  Identities=31%  Similarity=0.499  Sum_probs=38.2

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCC-CEEEEEEEEcCCCCceeEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQD-SGTLSCLATNYHGTAEMTIQL   50 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~-~~~y~~~a~n~~g~~~~~~~~   50 (273)
                      .||.+.......+..++|.|.++..+| .|.|.|.|.|..|.....+.|
T Consensus        49 ~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          49 GRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             CCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence            567776654445667899999999955 899999999999998877654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.01  E-value=2.5e-05  Score=49.64  Aligned_cols=38  Identities=26%  Similarity=0.407  Sum_probs=33.3

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      ....++|.|.++..+|.|.|.|.|.|..|....++.+.
T Consensus        58 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~   95 (96)
T cd05732          58 HARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE   95 (96)
T ss_pred             CccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence            44567899999999999999999999999988777664

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=97.96  E-value=3.4e-05  Score=48.41  Aligned_cols=39  Identities=33%  Similarity=0.483  Sum_probs=32.3

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEE
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLL   51 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~   51 (273)
                      .++....|.|.++..+|.|.|+|.|.|..|.... .+.+.
T Consensus        51 ~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~   90 (92)
T cd05866          51 KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE   90 (92)
T ss_pred             eCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence            4566678999999999999999999999998643 55554

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=97.92  E-value=5.4e-05  Score=47.96  Aligned_cols=39  Identities=31%  Similarity=0.487  Sum_probs=32.9

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCC-CCceeEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYH-GTAEMTIQLLV   52 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~-g~~~~~~~~~~   52 (273)
                      ++..++|.|.++.++|.|.|+|.|.|.. |....++.+.+
T Consensus        56 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          56 DDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             CCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            3446789999999999999999999997 77777777654

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=97.91  E-value=3.1e-05  Score=46.54  Aligned_cols=34  Identities=35%  Similarity=0.494  Sum_probs=30.9

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus        41 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745          41 TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            7999999999999999999999999888777653

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=97.89  E-value=8.6e-05  Score=48.16  Aligned_cols=89  Identities=22%  Similarity=0.297  Sum_probs=55.3

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCC----Cccce------eeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEc
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRE----SWNGV------LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRI  227 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~----~~~~~------i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  227 (273)
                      ||. +.+.   ...+.+.|.+.+|...    ..+..      ...|.|.|+..++..      ....   .......++|
T Consensus         5 PP~-v~v~---~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~------~~~~---~~~~~~~~~l   71 (106)
T PF09294_consen    5 PPS-VNVS---SCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNE------KKKE---IETKNSSVTL   71 (106)
T ss_dssp             SSE-EEEE---EETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSC------EEEE---EESSSEEEEE
T ss_pred             CCE-EEEE---ECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCcc------ceEE---EeecCCEEEE
Confidence            443 6664   4788999999999710    00111      257999999987641      0111   1222457799


Q ss_pred             CCCCccceEEEEEEEec--CCCcCCCCccEEEEc
Q psy6638         228 PGLTPYTKYAIVVRGYN--SVGKGPFSEPFIART  259 (273)
Q Consensus       228 ~~L~p~~~Y~~~v~a~n--~~g~~~~s~~~~~~t  259 (273)
                      .+|.|++.|-|+|++..  ....|.+|++.-+.|
T Consensus        72 ~~L~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~t  105 (106)
T PF09294_consen   72 SDLKPGTNYCVSVQAFSPSQNKNSQPSEPQCITT  105 (106)
T ss_dssp             ES--TTSEEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred             eCCCCCCCEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence            99999999999999943  233477777766655

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.89  E-value=9.3e-05  Score=45.24  Aligned_cols=36  Identities=19%  Similarity=0.196  Sum_probs=31.6

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      ....|.|.++.+.|.|.|+|.|.|.+|.....+.+.
T Consensus        44 ~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971          44 YHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             cEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            356799999999999999999999999988876654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.88  E-value=4.4e-05  Score=45.15  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=30.1

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      .|.|.++.++|.|.|+|.|.|..|.....+.+.
T Consensus        36 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   68 (69)
T cd05725          36 SLKIRNVTAGDEGSYTCEAENMVGKIEASASLT   68 (69)
T ss_pred             EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence            799999999999999999999999988777664

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.88  E-value=3.1e-05  Score=46.13  Aligned_cols=35  Identities=34%  Similarity=0.527  Sum_probs=31.7

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .+|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus        36 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876          36 KTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            48999999999999999999999999888777765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=97.87  E-value=4.3e-05  Score=45.48  Aligned_cols=34  Identities=26%  Similarity=0.582  Sum_probs=30.2

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus        38 ~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723          38 NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4888899999999999999999999988877653

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=97.87  E-value=5.6e-05  Score=45.53  Aligned_cols=36  Identities=25%  Similarity=0.152  Sum_probs=31.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      ...+|.|.++.++|.|.|+|.|.|..|.....+.+.
T Consensus        39 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (75)
T cd05744          39 GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD   74 (75)
T ss_pred             CeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence            345799999999999999999999999988877765

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>KOG4802|consensus

Probab=97.85  E-value=0.0002  Score=55.77  Aligned_cols=121  Identities=15%  Similarity=0.216  Sum_probs=77.8

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCcee-----EEEEEE-ecCCCCCcceEEEEeecc---EEEEEEeCCCCCCccceEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEM-----TIQLLV-QETPEAPKNIRITEESSR---SLQISWTAPYSGNTAITQY   89 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~-----~~~~~~-~~~P~~p~~~~~~~~~~~---~~~l~W~~~~~~~~~~~~y   89 (273)
                      +....++.|+..|.|++.|.|..|...-     .+...- .-+|.+|.++++..+...   ...+.|.|+ ..+.++..|
T Consensus       210 ~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~-~sdlPv~~Y  288 (516)
T KOG4802|consen  210 TYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPS-KSDLPVEKY  288 (516)
T ss_pred             eeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCC-CCCCcceee
Confidence            6888999999999999999998876422     222111 345667778776654322   245566655 567799999


Q ss_pred             EEEEEeCCCCCCCcc-c--eEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCC
Q psy6638          90 IIQYKSSEEMWPTQP-L--KIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSET  142 (273)
Q Consensus        90 ~v~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~  142 (273)
                      .|.|.-.-...+... .  ........  ..|.+|.|+..|.+.|+|+...|.+..
T Consensus       289 ki~Ws~~v~s~k~~m~tks~~~k~thq--~si~~L~Pns~Y~VevqAi~y~g~~rL  342 (516)
T KOG4802|consen  289 KITWSLYVNSAKASMITKSSYVKDTHQ--FSIKELLPNSSYYVEVQAISYLGSRRL  342 (516)
T ss_pred             EEEeehhhhhhhhhcccccceeeccch--hhhhhcCCCCeEEEEEEEEEeccCccc
Confidence            999975421111000 0  01111122  238999999999999999988775543

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=97.85  E-value=4.9e-05  Score=44.48  Aligned_cols=38  Identities=24%  Similarity=0.201  Sum_probs=32.1

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .....|.|.++..+|.|.|+|.|.|..|.....+.+.+
T Consensus        28 ~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863          28 HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            34568999999999999999999999998777666544

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=97.84  E-value=4.4e-05  Score=45.72  Aligned_cols=34  Identities=41%  Similarity=0.636  Sum_probs=30.8

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .|.|.++.++|.|.|+|.|.|..|.....+.+.|
T Consensus        40 ~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969          40 SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            6999999999999999999999999988777653

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.84  E-value=2.9e-05  Score=48.70  Aligned_cols=36  Identities=33%  Similarity=0.397  Sum_probs=32.2

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ...|.|.++..+|.|.|+|.|.|..|...+++.|.|
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V   89 (90)
T cd04974          54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV   89 (90)
T ss_pred             cceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence            357999999999999999999999999888887765

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=97.82  E-value=5.4e-05  Score=45.86  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=31.0

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      ..+|.|.++.+.|.|.|+|.|.|..|.....+.+.
T Consensus        43 ~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855          43 HGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            56899999999999999999999999988776543

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=97.81  E-value=9.3e-05  Score=46.59  Aligned_cols=37  Identities=24%  Similarity=0.359  Sum_probs=32.4

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      +..++|.|.++..+|.|.|+|.|.|..|.....+.+.
T Consensus        55 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   91 (92)
T cd05737          55 GKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS   91 (92)
T ss_pred             CCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence            4456899999999999999999999999988777664

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=97.80  E-value=4.2e-05  Score=47.96  Aligned_cols=36  Identities=33%  Similarity=0.445  Sum_probs=32.5

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .+.|.|.++..+|.|.|+|.|.|..|.....+.+.|
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   89 (90)
T cd05858          54 MEVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV   89 (90)
T ss_pred             eeEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence            468999999999999999999999999888877765

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.78  E-value=7.5e-05  Score=44.98  Aligned_cols=34  Identities=32%  Similarity=0.424  Sum_probs=30.8

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus        41 ~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763          41 VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            7999999999999999999999999887777665

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=97.77  E-value=0.00068  Score=50.32  Aligned_cols=114  Identities=13%  Similarity=0.116  Sum_probs=70.3

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS   96 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~   96 (273)
                      ...|.|.+++.+|.|.|+|.+.|..|.....+.+.+...+   .++  .......+.|.+..............+.|..+
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~---~~~--~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKn  171 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT---INY--QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKN  171 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC---ccc--eEecCCCEEEEeeCCCCccccCCCceEEEEEC
Confidence            3479999999999999999999988887777777774322   222  22235566777764311000001224666655


Q ss_pred             CCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          97 EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      +..-... ...........+.|.++.......|.+.|...
T Consensus       172 g~~l~~~-~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        172 GNIVLYT-DRIQLRNNNSTLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             CEECCCC-CCEEEeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence            4321111 11222233457889999999888888888764

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.77  E-value=9.6e-05  Score=46.25  Aligned_cols=39  Identities=46%  Similarity=0.701  Sum_probs=34.4

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .+..+.|.|.++..+|.|.|+|.+.|..|.....+.+.+
T Consensus        52 ~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   52 DGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             ETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence            457889999999999999999999999988888777654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=97.77  E-value=6.5e-05  Score=44.43  Aligned_cols=32  Identities=34%  Similarity=0.483  Sum_probs=29.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQL   50 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~   50 (273)
                      .|.|.++..+|.|.|+|.|.|..|.....+.|
T Consensus        37 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746          37 YLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            79999999999999999999999998777654

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=97.77  E-value=8.1e-05  Score=47.61  Aligned_cols=37  Identities=30%  Similarity=0.514  Sum_probs=33.2

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      .++|.|.++.++|.|.|+|.|.|..|.....+.+.+.
T Consensus        64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          64 VSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN  100 (101)
T ss_pred             EEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence            5789999999999999999999999998888777664

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=97.76  E-value=6.5e-05  Score=46.83  Aligned_cols=34  Identities=32%  Similarity=0.490  Sum_probs=31.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus        54 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          54 VLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             EEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence            7999999999999999999999999988887765

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.72  E-value=8.9e-05  Score=45.39  Aligned_cols=35  Identities=34%  Similarity=0.426  Sum_probs=31.2

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .+|.|.++.++|.|.|.|.|.|..|.....+.|.|
T Consensus        47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   81 (81)
T cd05765          47 GQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV   81 (81)
T ss_pred             cEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence            48999999999999999999999999888777653

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.70  E-value=0.00012  Score=46.37  Aligned_cols=37  Identities=35%  Similarity=0.450  Sum_probs=33.0

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      .+.|.|.++..+|.|.|+|.|.|..|.....+.+.+.
T Consensus        57 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~   93 (95)
T cd05730          57 GSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF   93 (95)
T ss_pred             CCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence            3579999999999999999999999998888887764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=97.70  E-value=0.00018  Score=45.25  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=32.2

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      +..++|.|.++..+|.|.|+|.|.|..|.....+.+.
T Consensus        55 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   91 (92)
T cd05891          55 GKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVS   91 (92)
T ss_pred             CCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence            3346799999999999999999999999988877664

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.68  E-value=0.00018  Score=43.42  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=30.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQ   49 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~   49 (273)
                      .+..+.|.|.++..+|.|.|+|.+.|..|....++.
T Consensus        40 ~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895          40 KKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            345678999999999999999999999998776543

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=97.67  E-value=0.00017  Score=45.41  Aligned_cols=37  Identities=24%  Similarity=0.347  Sum_probs=32.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQL   50 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~   50 (273)
                      .+..+.|.|.++..+|.|.|.|.|.|..|.....+.|
T Consensus        55 ~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          55 TEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             cCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence            4446789999999999999999999999988776654

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=97.67  E-value=0.00016  Score=43.50  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=30.8

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQ   49 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~   49 (273)
                      .....+|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus        39 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750          39 KKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             cCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            345678999999999999999999999998766543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=97.67  E-value=0.00011  Score=44.65  Aligned_cols=37  Identities=27%  Similarity=0.311  Sum_probs=31.1

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQL   50 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~   50 (273)
                      .+....|.|.++.++|.|.|+|.|.|..|.......+
T Consensus        38 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~   74 (78)
T cd05743          38 EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG   74 (78)
T ss_pred             CCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence            4456789999999999999999999999987664443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>KOG4194|consensus

Probab=97.64  E-value=0.012  Score=49.09  Aligned_cols=125  Identities=18%  Similarity=0.238  Sum_probs=84.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      .+.|.+.++.-.|+|.|+|.+.|.+|+.-+ .+.+.+...|.   .|.++.+.....  ..+.+.+.-.+.     -+|.
T Consensus       573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~m--Arl~CaAtG~P~-----PeIa  645 (873)
T KOG4194|consen  573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQM--ARLECAATGHPR-----PEIA  645 (873)
T ss_pred             hheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccc--eeeeeeccCCCC-----ccee
Confidence            567999999999999999999999999866 88888988885   666665543333  334443321111     2355


Q ss_pred             EEeCCCC-CCCc-cceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEE
Q psy6638          93 YKSSEEM-WPTQ-PLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQA  148 (273)
Q Consensus        93 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~  148 (273)
                      |...++. +... .+...+-.....+-|.+.++.....|.+.|.|..|.-...+.+.+
T Consensus       646 wqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V  703 (873)
T KOG4194|consen  646 WQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTV  703 (873)
T ss_pred             ehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEE
Confidence            5554432 3211 123333345567788999999999999999999986555554433

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=97.64  E-value=0.00017  Score=43.58  Aligned_cols=37  Identities=41%  Similarity=0.556  Sum_probs=33.2

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      .+.|.|.++...|.|.|+|.+.|..|.....+.+.+.
T Consensus        38 ~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736          38 GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            3579999999999999999999999999988888764

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.64  E-value=0.00017  Score=45.22  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=32.2

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      ....|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus        54 ~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~   89 (90)
T cd04972          54 DIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT   89 (90)
T ss_pred             CEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence            456899999999999999999999999988877764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=97.63  E-value=0.0003  Score=45.66  Aligned_cols=81  Identities=22%  Similarity=0.335  Sum_probs=56.6

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE-eCCCCCCCccceEEecCCccEEEecCCC--CCCeEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIVPGSQTSATLQPLL--PATQYQVR  130 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~y~~~  130 (273)
                      ....+|.++++.+. +....|.|+++.. ...-..|.|+++ ...+.|.....+...  ..+.+.+....  ....|.+|
T Consensus        20 ~~lp~P~nv~~~s~-nf~~iL~W~~~~~-~~~~~~ytVq~~~~~~~~W~~v~~C~~i--~~~~Cdlt~~~~~~~~~Y~~r   95 (107)
T PF01108_consen   20 ASLPAPQNVTVDSV-NFKHILRWDPGPG-SPPNVTYTVQYKKYGSSSWKDVPGCQNI--TETSCDLTDETSDPSESYYAR   95 (107)
T ss_dssp             SSGSSCEEEEEEEE-TTEEEEEEEESTT-SSSTEEEEEEEEESSTSCEEEECCEEEE--SSSEEECTTCCTTTTSEEEEE
T ss_pred             ccCCCCCeeEEEEE-CCceEEEeCCCCC-CCCCeEEEEEEEecCCcceeeccceecc--cccceeCcchhhcCcCCEEEE
Confidence            34457888888775 5568999998533 335678999999 455677755444444  44677776533  78889999


Q ss_pred             EEEeCCCC
Q psy6638         131 LLAENPLG  138 (273)
Q Consensus       131 v~a~~~~g  138 (273)
                      |+|..+..
T Consensus        96 V~A~~~~~  103 (107)
T PF01108_consen   96 VRAEVGNQ  103 (107)
T ss_dssp             EEEEETTE
T ss_pred             EEEEeCCc
Confidence            99986543

...

>PHA02785 IL-beta-binding protein; Provisional

Probab=97.63  E-value=0.02  Score=45.28  Aligned_cols=113  Identities=13%  Similarity=0.100  Sum_probs=63.5

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC--C---CcceEEEEeeccEEEEEEeCCC---CCCccceEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE--A---PKNIRITEESSRSLQISWTAPY---SGNTAITQY   89 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~--~---p~~~~~~~~~~~~~~l~W~~~~---~~~~~~~~y   89 (273)
                      +.|.|.++..+|+|.|+|.+.|..|.....+.+.+.....  .   +....+.  ......+.+....   .++.+   -
T Consensus        82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~--~g~~~~i~C~~~~~~~~~~~~---~  156 (326)
T PHA02785         82 SNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVN--ERSTGEMVCPNINAFIASNVN---A  156 (326)
T ss_pred             ceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceec--ccCcEEEECCChhhcccCCCC---c
Confidence            3588999999999999999999998877777777644321  1   0111111  1222334332110   01111   1


Q ss_pred             EEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          90 IIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      .+.|..... ..  ...... .....+.|.++.......|.+.+.|..|.
T Consensus       157 ~i~W~k~~~-~~--~~r~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  202 (326)
T PHA02785        157 DIIWSGHRR-LR--NKRLKQ-RTPGIITIEDVRKNDAGYYTCVLKYIYGD  202 (326)
T ss_pred             eEEEccCCc-cC--CcceEe-cCCCeEEEeecChhhCeEEEEEEEeccCC
Confidence            344432211 00  011111 12346888889888888999999987763

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.63  E-value=0.00013  Score=44.03  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=30.8

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .|.|.++.++|.|.|+|.|.|..|.....+.+.|
T Consensus        42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867          42 ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            7999999999999999999999999888777654

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=97.62  E-value=0.00012  Score=43.53  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=30.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .+|.|.++.++|.|.|+|.|.|..|.......+.+
T Consensus        35 ~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976          35 HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            47999999999999999999999998777665544

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=97.62  E-value=0.00012  Score=46.85  Aligned_cols=37  Identities=30%  Similarity=0.411  Sum_probs=33.0

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      .++|.|.++..+|.|.|+|.|.|..|....++.+.+.
T Consensus        64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          64 VSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             ccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence            4689999999999999999999999998887777654

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=97.62  E-value=0.00012  Score=43.37  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=30.0

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ..|.|.++.++|.|.|+|.|.|..|.......+.+
T Consensus        34 ~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864          34 VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            37999999999999999999999998877555443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.61  E-value=0.0001  Score=43.85  Aligned_cols=36  Identities=39%  Similarity=0.527  Sum_probs=31.5

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ...|.|.++..+|.|.|+|.|.|..|.....+.+.+
T Consensus        35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731          35 NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            347999999999999999999999998887776654

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.61  E-value=0.00025  Score=42.54  Aligned_cols=33  Identities=33%  Similarity=0.571  Sum_probs=29.5

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      +|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus        41 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05764          41 TLDILITTVKDTGSFTCIASNAAGEATATVELH   73 (74)
T ss_pred             EEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            699999999999999999999999887776654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=97.60  E-value=0.0002  Score=43.61  Aligned_cols=32  Identities=34%  Similarity=0.476  Sum_probs=27.6

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEM-TIQL   50 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~   50 (273)
                      +|.|.++.++|.|.|.|.|.|..|.... .+.+
T Consensus        45 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734          45 SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             eEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            7999999999999999999999998744 4444

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=97.60  E-value=0.00036  Score=43.86  Aligned_cols=38  Identities=39%  Similarity=0.553  Sum_probs=30.4

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCC-ceeEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGT-AEMTIQLL   51 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~-~~~~~~~~   51 (273)
                      .+..+.|.|.++..+|.|.|+|.|.|..|. ...++.+.
T Consensus        53 ~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~   91 (92)
T cd04977          53 DDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK   91 (92)
T ss_pred             CCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence            445679999999999999999999998765 44455553

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=97.55  E-value=0.00022  Score=44.42  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=31.5

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ..|.|.++..+|.|.|+|.|.|..|.......+.+
T Consensus        53 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   87 (88)
T cd04968          53 AVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV   87 (88)
T ss_pred             CEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence            37999999999999999999999999888777765

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=97.55  E-value=0.00022  Score=44.01  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=32.3

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ..+.|.|.+++.+|.|.|+|.|.|..|....+..+.+
T Consensus        47 ~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v   83 (84)
T cd05742          47 LSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI   83 (84)
T ss_pred             EEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence            4678999999999999999999999998887766643

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=97.55  E-value=0.00017  Score=43.48  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ..|.|.++.++|.|.|+|.|.|..|...+.+.+.+
T Consensus        41 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978          41 GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            47999999999999999999999999888777654

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=97.55  E-value=0.00017  Score=43.58  Aligned_cols=34  Identities=21%  Similarity=0.186  Sum_probs=31.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .|.|.++.+.|.|.|+|.|.|..|...+.+.+.+
T Consensus        42 ~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868          42 TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            6899999999999999999999999998887765

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.53  E-value=0.00021  Score=44.83  Aligned_cols=35  Identities=31%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLV   52 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~   52 (273)
                      ..|.|.++.++|.|.|+|.|.|..|...+ .+.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          55 RTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             CEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            37999999999999999999999998765 555554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=97.50  E-value=0.0014  Score=42.50  Aligned_cols=82  Identities=22%  Similarity=0.244  Sum_probs=52.7

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCC--ccc
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT--PYT  234 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~--p~~  234 (273)
                      .+|.++++..   ......|.|+++..   ...-..|.|+|+..+...+...    .....  .....+.+++..  +..
T Consensus        23 p~P~nv~~~s---~nf~~iL~W~~~~~---~~~~~~ytVq~~~~~~~~W~~v----~~C~~--i~~~~Cdlt~~~~~~~~   90 (107)
T PF01108_consen   23 PAPQNVTVDS---VNFKHILRWDPGPG---SPPNVTYTVQYKKYGSSSWKDV----PGCQN--ITETSCDLTDETSDPSE   90 (107)
T ss_dssp             SSCEEEEEEE---ETTEEEEEEEESTT---SSSTEEEEEEEEESSTSCEEEE----CCEEE--ESSSEEECTTCCTTTTS
T ss_pred             CCCCeeEEEE---ECCceEEEeCCCCC---CCCCeEEEEEEEecCCcceeec----cceec--ccccceeCcchhhcCcC
Confidence            3788999876   46678999999655   2345789999994443322111    11111  113577776643  678


Q ss_pred             eEEEEEEEecCCCcCC
Q psy6638         235 KYAIVVRGYNSVGKGP  250 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~  250 (273)
                      .|.+||+|......|.
T Consensus        91 ~Y~~rV~A~~~~~~S~  106 (107)
T PF01108_consen   91 SYYARVRAEVGNQTSD  106 (107)
T ss_dssp             EEEEEEEEEETTEEEE
T ss_pred             CEEEEEEEEeCCccCC
Confidence            9999999997654443

...

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=97.49  E-value=0.00025  Score=43.81  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=30.9

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      ...|.|.++.++|.|.|+|.|.|..|.....+.+.
T Consensus        50 ~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05857          50 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   84 (85)
T ss_pred             ceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence            34799999999999999999999999988877665

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=97.48  E-value=0.00026  Score=43.38  Aligned_cols=35  Identities=26%  Similarity=0.383  Sum_probs=30.7

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      ...|.|.++.++|.|.|+|.|.|..|.....+.+.
T Consensus        47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856          47 KWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            46899999999999999999999999877766654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=97.46  E-value=0.00026  Score=42.83  Aligned_cols=29  Identities=28%  Similarity=0.336  Sum_probs=26.2

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~   46 (273)
                      ..|.|.++.++|.|.|.|.|.|.+|....
T Consensus        38 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   66 (77)
T cd05760          38 RTLTLRSAGPDDSGLYYCCAHNAFGSVCS   66 (77)
T ss_pred             CEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence            37999999999999999999999998654

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.45  E-value=0.00046  Score=41.98  Aligned_cols=33  Identities=21%  Similarity=0.447  Sum_probs=28.6

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      .|.|.++..+|.|.|+|.|.|..|.....+.+.
T Consensus        46 ~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~   78 (79)
T cd04973          46 EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN   78 (79)
T ss_pred             EEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence            699999999999999999999998876665543

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.45  E-value=0.00047  Score=42.62  Aligned_cols=33  Identities=36%  Similarity=0.559  Sum_probs=30.1

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      .|.|.++..+|.|.|+|.|.|..|.....+.+.
T Consensus        52 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05728          52 DLRITKLSLSDSGMYQCVAENKHGTIYASAELA   84 (85)
T ss_pred             EEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence            699999999999999999999999988877665

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.43  E-value=0.00049  Score=41.27  Aligned_cols=34  Identities=38%  Similarity=0.496  Sum_probs=28.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~   52 (273)
                      .|.|.++..+|.|.|+|.|.|..|.... .+.+.+
T Consensus        39 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738          39 ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            6999999999999999999999998643 555543

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.40  E-value=0.00072  Score=41.68  Aligned_cols=37  Identities=27%  Similarity=0.350  Sum_probs=30.0

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCC--CceeEEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHG--TAEMTIQLLV   52 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g--~~~~~~~~~~   52 (273)
                      ..+.|.|.+++.+|.|.|.|.|.|..+  ....++.+.|
T Consensus        44 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V   82 (84)
T cd05861          44 LRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITV   82 (84)
T ss_pred             EEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence            467999999999999999999998776  4445665554

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=97.32  E-value=0.00053  Score=42.45  Aligned_cols=38  Identities=29%  Similarity=0.371  Sum_probs=32.5

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      ..++|.|.++...|.|.|+|.|.|..|.......+.+.
T Consensus        48 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~   85 (86)
T cd05862          48 LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH   85 (86)
T ss_pred             eeeEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence            46789999999999999999999998877777666653

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.30  E-value=0.0019  Score=44.17  Aligned_cols=39  Identities=31%  Similarity=0.435  Sum_probs=34.7

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      .|.|.+++..|.|.|.|.+.+..|.....+.+.+..+|.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~   40 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPR   40 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCc
Confidence            689999999999999999999888888888888887765

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.29  E-value=0.00088  Score=41.43  Aligned_cols=32  Identities=41%  Similarity=0.583  Sum_probs=27.5

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEM-TIQL   50 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~   50 (273)
                      .|.|.++.++|.|.|+|.|.|..|...+ .+.+
T Consensus        52 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l   84 (86)
T cd05724          52 NLLIAEARKSDEGTYKCVATNMVGERESAAARL   84 (86)
T ss_pred             EEEEeECCcccCEEEEEEEEeccCceeeeeEEE
Confidence            7999999999999999999999998654 4443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=97.19  E-value=0.0058  Score=52.50  Aligned_cols=127  Identities=15%  Similarity=0.157  Sum_probs=65.9

Q ss_pred             CccEEEecCCCCCCeEEEEEEEeCCCCCCCCCc-ceEEEecC-CCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccce
Q psy6638         112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGA-ELQASTLE-EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGV  189 (273)
Q Consensus       112 ~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~-~~~~~~~~-~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~  189 (273)
                      ....+.+.+|.+| .|.++|+|+|..|....-. ...+.... ..|  +|..+.... ....-.+.+.|-.|..   .-.
T Consensus       658 ~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~P--pp~~~t~~a-~~it~~~~l~v~dPt~---~~d  730 (952)
T COG4733         658 SAAGFDVEGIPAG-QYAIRVRAINVFEPNSPDATAYEFALNGKKVP--PPKAMIYDA-VIITLVIRLVVGDPTG---AVD  730 (952)
T ss_pred             cccceeecCcCcc-ceEEEEEEeeccCCCCCCcceeEEEecCCCCC--CCcccccce-EEEEeeeeEEEecCCc---ceE
Confidence            4567888998885 6999999999888543222 33343332 223  222221111 0133456778877753   111


Q ss_pred             eeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCC
Q psy6638         190 LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS  252 (273)
Q Consensus       190 i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s  252 (273)
                      +..-.+++....+.+..     ...+.  ....-...-.+|+++..|.|+++++|..|.+.+-
T Consensus       731 ~~~sei~~s~~~d~~~~-----Ar~LG--~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~  786 (952)
T COG4733         731 ITSTEIRSAVIADGNFQ-----ARSLG--NLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKW  786 (952)
T ss_pred             EeeeeeeeeccccchhH-----Hhhhh--ccccccccccCcCCCceEEEEeeecccccccccc
Confidence            22222333222211100     00000  0000111115899999999999999999986544

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.12  E-value=0.0019  Score=41.13  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLV   52 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~   52 (273)
                      ..+|.|.+++.+|.|.|+|...+ ..|.....+.|.|
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            34799999999999999999998 6777666776665

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.11  E-value=0.001  Score=41.96  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=30.3

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      ..|.|.++..+|.|.|.|.+.|..|.....+.|.
T Consensus        60 ~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~   93 (94)
T cd05756          60 DLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLT   93 (94)
T ss_pred             CeEEEccCCcccCeEEEEEEcCCCccEEEEEEEE
Confidence            3799999999999999999999999988777664

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>KOG4194|consensus

Probab=97.03  E-value=0.011  Score=49.29  Aligned_cols=60  Identities=27%  Similarity=0.284  Sum_probs=45.8

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEE-eeccEEEEEEeC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITE-ESSRSLQISWTA   78 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~-~~~~~~~l~W~~   78 (273)
                      .+.|.++..+|.|.|+|.|.|..|.-.+.+.++|...|.+...+.-.. .-...+.|++..
T Consensus       670 ~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a  730 (873)
T KOG4194|consen  670 VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLA  730 (873)
T ss_pred             EEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEec
Confidence            699999999999999999999999999999999988876433332221 134456666654

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.02  E-value=0.0028  Score=40.99  Aligned_cols=40  Identities=23%  Similarity=0.225  Sum_probs=33.4

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      .....|.|.+++.+|.|.|+|.+.+..+.....+.+.+.+
T Consensus        65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence            4567999999999999999999999877767777776654

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.01  E-value=0.0032  Score=39.81  Aligned_cols=35  Identities=17%  Similarity=0.145  Sum_probs=26.4

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQL   50 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~   50 (273)
                      ...++|.|.++.++|.|.|.|.+.+..+. .....+
T Consensus        59 ~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~-~~~~~l   93 (95)
T cd07701          59 WHELSISISDVSLSDEGQYTCSLFTMPVK-TSKAYL   93 (95)
T ss_pred             CCcEEEEECcCCcccCEEEEEEeEeecCc-cEEEEE
Confidence            34568999999999999999999984332 334444

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.01  E-value=0.0036  Score=40.84  Aligned_cols=39  Identities=23%  Similarity=0.245  Sum_probs=32.3

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      ....|.|.+++.+|.|.|+|.+.++.......+.+.+.+
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            457899999999999999999998777776677666653

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>KOG4367|consensus

Probab=96.99  E-value=0.0012  Score=51.88  Aligned_cols=82  Identities=23%  Similarity=0.323  Sum_probs=65.5

Q ss_pred             eeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcce
Q psy6638          67 ESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAEL  146 (273)
Q Consensus        67 ~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~  146 (273)
                      ..++++++.|..|.....+..+|.++.....+.    .....+.+..+.+++.+|.=++.|..||.+.|..|.+.++..+
T Consensus       450 t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g----~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl  525 (699)
T KOG4367|consen  450 THNNSATLSWKQPPLSTVPADGYILELDDGNGG----QFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL  525 (699)
T ss_pred             ccCCceEEEeecCCCCCCCCcceEEEeecCCCC----ceeEEEecCceeEEecceecchhHHHHHHHhhccCCCccccee
Confidence            357899999996655666888999998775432    1234566788899999999999999999999999999999887


Q ss_pred             EEEecC
Q psy6638         147 QASTLE  152 (273)
Q Consensus       147 ~~~~~~  152 (273)
                      ...+..
T Consensus       526 ~lqts~  531 (699)
T KOG4367|consen  526 VLQTSE  531 (699)
T ss_pred             Eeeecc
Confidence            766643

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=96.94  E-value=0.0037  Score=39.92  Aligned_cols=37  Identities=30%  Similarity=0.294  Sum_probs=29.8

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ...+|.|.+++.+|.|.|+|.+.+..+.....+.+.+
T Consensus        63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            4568999999999999999999987666555655543

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=96.92  E-value=0.0042  Score=39.10  Aligned_cols=32  Identities=28%  Similarity=0.417  Sum_probs=26.4

Q ss_pred             EEEEeeee-eCCCEEEEEEEEcCCCCcee-EEEE
Q psy6638          19 ELGIANVL-RQDSGTLSCLATNYHGTAEM-TIQL   50 (273)
Q Consensus        19 ~l~i~~~~-~~~~~~y~~~a~n~~g~~~~-~~~~   50 (273)
                      .|.|.++. ..|.|.|+|.|.|..|...+ .+.+
T Consensus        58 ~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          58 NLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             EEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            69999885 68999999999999998765 4443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=96.90  E-value=0.0038  Score=40.38  Aligned_cols=39  Identities=15%  Similarity=0.246  Sum_probs=32.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      ....|.|.+++.+|.|.|+|.+.+..+.....+.+.|.+
T Consensus        66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence            356899999999999999999999888877777776643

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=96.89  E-value=0.0072  Score=39.05  Aligned_cols=86  Identities=21%  Similarity=0.282  Sum_probs=52.0

Q ss_pred             CCcceEEEEeeccEEEEEEeCCC-----CCCc-------cceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCC
Q psy6638          58 APKNIRITEESSRSLQISWTAPY-----SGNT-------AITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPAT  125 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~-----~~~~-------~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  125 (273)
                      ||. +.+ ....+.+.+.+.+|.     ....       ....|.|.+...+..    ............+.+.+|.|++
T Consensus         5 PP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~----~~~~~~~~~~~~~~l~~L~p~t   78 (106)
T PF09294_consen    5 PPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN----EKKKEIETKNSSVTLSDLKPGT   78 (106)
T ss_dssp             SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS----CEEEEEESSSEEEEEES--TTS
T ss_pred             CCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc----cceEEEeecCCEEEEeCCCCCC
Confidence            444 555 456788888888775     1110       235799998876654    1223344456677899999999


Q ss_pred             eEEEEEEEeC--CCCCCCCCcceEEE
Q psy6638         126 QYQVRLLAEN--PLGMSETGAELQAS  149 (273)
Q Consensus       126 ~y~~~v~a~~--~~g~~~~s~~~~~~  149 (273)
                      .|-++|++..  ....|.+|.+..+.
T Consensus        79 ~YCv~V~~~~~~~~~~s~~S~~~C~~  104 (106)
T PF09294_consen   79 NYCVSVQAFSPSQNKNSQPSEPQCIT  104 (106)
T ss_dssp             EEEEEEEEEECSSTEEEEEBSEEEEE
T ss_pred             CEEEEEEEEeccCCCcCCCCCCEeEe
Confidence            9999999932  22244555554444

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>PHA02785 IL-beta-binding protein; Provisional

Probab=96.89  E-value=0.088  Score=41.74  Aligned_cols=117  Identities=14%  Similarity=0.187  Sum_probs=65.3

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCcee----EEEEEEecCCCC-----CcceEEEEeeccEEEEEEeCCCCCCccceE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEM----TIQLLVQETPEA-----PKNIRITEESSRSLQISWTAPYSGNTAITQ   88 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~----~~~~~~~~~P~~-----p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~   88 (273)
                      ..|.|.++..+|.|.|+|.+.|..|....    .+.+.+..+..+     |..+  .......+.|.+.....+. +. .
T Consensus       177 ~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~--~~~~G~~v~L~C~a~g~P~-~~-~  252 (326)
T PHA02785        177 GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGV--VTSIGSNLTIACRVSLRPP-TT-D  252 (326)
T ss_pred             CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcE--EecCCCcEEEEEEEECCCC-CC-C
Confidence            37999999999999999999998887543    233444332222     3222  2223556777776532111 11 1


Q ss_pred             EEEEEEeCCCCCCC----ccceEEe-c------C---CccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          89 YIIQYKSSEEMWPT----QPLKIIV-P------G---SQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        89 y~v~~~~~~~~~~~----~~~~~~~-~------~---~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      -.+.|..++.....    ....... .      .   ....+.|.++.......|.+.|.|..|
T Consensus       253 ~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~  316 (326)
T PHA02785        253 ADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPS  316 (326)
T ss_pred             ceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccC
Confidence            13455544321100    0001000 0      0   123577888888888899999988764

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=96.88  E-value=0.0031  Score=38.71  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=30.5

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      ....|.|.++..+|.|.|.|.+.|..|.....+.+.
T Consensus        49 ~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729          49 KKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             cEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            345799999999999999999999998877766554

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=96.85  E-value=0.0059  Score=38.57  Aligned_cols=36  Identities=17%  Similarity=0.177  Sum_probs=27.1

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      +....|.|.+++.+|.|.|.|.+.+... ..+.+.+.
T Consensus        59 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~   94 (95)
T cd05717          59 ANELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVT   94 (95)
T ss_pred             CCeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEE
Confidence            3456899999999999999999987643 34444443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=96.83  E-value=0.0017  Score=40.04  Aligned_cols=33  Identities=39%  Similarity=0.469  Sum_probs=29.3

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQL   50 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~   50 (273)
                      ..|.|.++.++|.|.|.|.|.|..|.....+.+
T Consensus        52 ~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          52 GILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             CEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            479999999999999999999999988776654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=96.82  E-value=0.15  Score=39.30  Aligned_cols=130  Identities=18%  Similarity=0.229  Sum_probs=75.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE-E------ecCCCCCcceEEEEe----eccEEEEEEeCCCCCCcc
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL-V------QETPEAPKNIRITEE----SSRSLQISWTAPYSGNTA   85 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~-~------~~~P~~p~~~~~~~~----~~~~~~l~W~~~~~~~~~   85 (273)
                      -..+.|.++.++..|..++...+.... ...+.+. .      ...|..|.+..+...    +-++++|.|.+..+.  .
T Consensus       127 ~~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~--~  203 (300)
T PF10179_consen  127 LRHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDR--S  203 (300)
T ss_pred             eEEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCC--C
Confidence            457888888888888888866654332 2223333 2      234677887777554    347999999975432  2


Q ss_pred             ceEEEEEEEeCCCC---------CC-Cc-------cceE-E---ec--------CCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          86 ITQYIIQYKSSEEM---------WP-TQ-------PLKI-I---VP--------GSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        86 ~~~y~v~~~~~~~~---------~~-~~-------~~~~-~---~~--------~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                       ..|-|..+.....         +. +.       .+.. +   ..        .....-+|.+|+||..|.|.|.+.-.
T Consensus       204 -~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~  282 (300)
T PF10179_consen  204 -IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGP  282 (300)
T ss_pred             -ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEecC
Confidence             3676666543221         00 00       0000 1   11        11233478999999999999999876


Q ss_pred             CCCCCCCcceEEEe
Q psy6638         137 LGMSETGAELQAST  150 (273)
Q Consensus       137 ~g~~~~s~~~~~~~  150 (273)
                      .|.+-.-....+.|
T Consensus       283 ~G~sl~Y~s~~VkT  296 (300)
T PF10179_consen  283 SGQSLPYRSKWVKT  296 (300)
T ss_pred             CCceeecceEEEEe
Confidence            66543333333333

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=96.81  E-value=0.0031  Score=40.33  Aligned_cols=84  Identities=21%  Similarity=0.319  Sum_probs=55.1

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCc-----cEEEecCCCCCCeEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ-----TSATLQPLLPATQYQ  128 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~y~  128 (273)
                      .+|..|.++...+.....+++.|++...++.+. .|.+.|...+..|.............     +.+.-....-...|.
T Consensus         6 ~~p~~P~~~~C~S~~~etftC~W~~g~~~~l~~-~y~L~Y~~~~~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~   84 (104)
T PF09067_consen    6 LPPEKPENLKCFSREMETFTCFWEPGSEGNLPT-NYTLFYKKEGEEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYC   84 (104)
T ss_dssp             HHCCCCEEEEEEBSSSS-EEEEEEEESSSTSTC-EEEEEEEETTSEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEE
T ss_pred             cCCCCCccCccCCCCCCcEEEEeeCCCCCCCCC-cEEEEEEeCCCCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEE
Confidence            467888888888888899999999886555443 49999988764443211111001112     233334678888999


Q ss_pred             EEEEEeCCCC
Q psy6638         129 VRLLAENPLG  138 (273)
Q Consensus       129 ~~v~a~~~~g  138 (273)
                      ++|.+.+..|
T Consensus        85 i~V~a~~~~~   94 (104)
T PF09067_consen   85 IQVEATNALG   94 (104)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEeccCCC
Confidence            9999998876

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=96.80  E-value=0.0042  Score=38.94  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=28.0

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQL   50 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~   50 (273)
                      ..|.|.++..+|.|.|+|.+.|..|.....+..
T Consensus        52 ~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~   84 (92)
T cd05757          52 SKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR   84 (92)
T ss_pred             CEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence            479999999999999999999998876654443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=96.78  E-value=0.0014  Score=41.24  Aligned_cols=40  Identities=28%  Similarity=0.201  Sum_probs=29.3

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGT   43 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~   43 (273)
                      .|+..+.. ..+...+.|.|.+++.+|.|.|.|.+.|..+.
T Consensus        51 ~r~~~~~~-~~~~g~~~L~I~~l~~sDsgtY~C~v~~~~~~   90 (94)
T cd07690          51 DRADSRRN-LWDQGSFPLIIKNLKIEDSDTYICEVEDKKEE   90 (94)
T ss_pred             CCCceecc-cCCCCeEEEEECCCCHHHCEEEEEEECCccce
Confidence            34444432 22344678999999999999999999987654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=96.78  E-value=0.0055  Score=38.65  Aligned_cols=28  Identities=43%  Similarity=0.496  Sum_probs=24.2

Q ss_pred             EEEEeeee-eCCCEEEEEEEEcCCCCcee
Q psy6638          19 ELGIANVL-RQDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        19 ~l~i~~~~-~~~~~~y~~~a~n~~g~~~~   46 (273)
                      .|.|.++. +.|.|.|+|.|.|..|...+
T Consensus        59 ~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          59 NLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             eEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence            58888874 69999999999999998755

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=96.77  E-value=0.0038  Score=39.39  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=22.1

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ....|.|.++..+|.|.|+|.+..
T Consensus        60 ~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882          60 TELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ceEEEEECCCCcccCEEEEEEEEe
Confidence            457899999999999999999987

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=96.75  E-value=0.0068  Score=39.49  Aligned_cols=40  Identities=23%  Similarity=0.209  Sum_probs=33.5

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      .....|.|.+++.+|.|.|.|.+..........+.+.+.+
T Consensus        69 ~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          69 RGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             CCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            3456899999999999999999998777777788777754

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=96.73  E-value=0.0079  Score=38.17  Aligned_cols=40  Identities=20%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA   44 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~   44 (273)
                      .+|.-|..+  ++....|.|.+++.+|.|.|.|...+..|..
T Consensus        48 ~~f~~R~~~--~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~   87 (97)
T cd05775          48 PSYKERVNF--SQNDYSLQISNLKMEDAGSYRAEINTKNGVT   87 (97)
T ss_pred             CCceeeEEe--cCCceeEEECCCchHHCEEEEEEEEcCCCCe
Confidence            345445544  3445689999999999999999998876554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=96.72  E-value=0.0085  Score=37.78  Aligned_cols=28  Identities=39%  Similarity=0.532  Sum_probs=24.2

Q ss_pred             EEEEeeee-eCCCEEEEEEEEcCCCCcee
Q psy6638          19 ELGIANVL-RQDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        19 ~l~i~~~~-~~~~~~y~~~a~n~~g~~~~   46 (273)
                      .|.|.++. ..|.|.|+|.|.|..|...+
T Consensus        59 ~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          59 NLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             eEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence            58888865 59999999999999998765

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=96.68  E-value=0.0085  Score=37.49  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=27.8

Q ss_pred             EEEEeeeeeCCCEEEEEEEE-cCCCCceeEEEEEEe
Q psy6638          19 ELGIANVLRQDSGTLSCLAT-NYHGTAEMTIQLLVQ   53 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~-n~~g~~~~~~~~~~~   53 (273)
                      .|.|.++.++|.|.|.|.+. +..+.....+.|.+.
T Consensus        54 ~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~   89 (91)
T cd05871          54 GLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVI   89 (91)
T ss_pred             eEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEe
Confidence            59999999999999999998 466555556666654

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=96.68  E-value=0.0058  Score=38.25  Aligned_cols=38  Identities=29%  Similarity=0.443  Sum_probs=28.9

Q ss_pred             eeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638           4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA   44 (273)
Q Consensus         4 r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~   44 (273)
                      +|.-|..+..+   ..|.|.+++.+|.|.|+|......|..
T Consensus        46 ~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~~~~~~~   83 (92)
T cd05741          46 AYSGRETIYPN---GSLLIQNLTKEDSGTYTLQIISTNGVT   83 (92)
T ss_pred             CcCCeEEEcCC---ceEEEccCCchhcEEEEEEEEcCCCcE
Confidence            44455555444   489999999999999999998876443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=96.67  E-value=0.0042  Score=36.57  Aligned_cols=31  Identities=29%  Similarity=0.500  Sum_probs=25.6

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQL   50 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~   50 (273)
                      ..|.|.++.  +.|.|+|.|.|..|.....+.+
T Consensus        38 ~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739          38 NVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            368898874  7899999999999988776654

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=96.66  E-value=0.0072  Score=39.25  Aligned_cols=39  Identities=23%  Similarity=0.215  Sum_probs=32.3

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      ....|+|.+++++|.|.|+|............+.|.+.+
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            467999999999999999999998766666677777654

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=96.65  E-value=0.012  Score=38.42  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=33.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      ...|.|.+++.+|.|.|+|............+.+.+.+
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            46899999999999999999999888887788777654

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=96.65  E-value=0.21  Score=38.67  Aligned_cols=199  Identities=11%  Similarity=0.046  Sum_probs=105.1

Q ss_pred             eeeeeCCCEEEEEEEEcCCCCceeEEEEEE---ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCC
Q psy6638          23 ANVLRQDSGTLSCLATNYHGTAEMTIQLLV---QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM   99 (273)
Q Consensus        23 ~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~---~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~   99 (273)
                      +++.....+.|.+.+.+..+.-..++...-   ...|..-.++++.....+.+.|+|+.+..    ...|.|+....+..
T Consensus       129 s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~----~~yy~IY~~~~g~e  204 (343)
T COG3401         129 SDLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEA----EDYYRIYASDSGNE  204 (343)
T ss_pred             cccccccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCccc----cceEEEeccCCccc
Confidence            366677788888888876665544433221   22232333444555667889999987643    22788887665432


Q ss_pred             CCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC-CCCCCcceEEEecCCCCCC--CCeeEEecCCccCCceEEE
Q psy6638         100 WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG-MSETGAELQASTLEEAPNG--APREVTSDPGVVDPTELLI  176 (273)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g-~~~~s~~~~~~~~~~~p~~--~p~~~~~~~~~~~~~~i~l  176 (273)
                      -.    ........+.+...--..|..|.+.|.++...| .+..+...........+..  +|...      .....+.|
T Consensus       205 ~~----~~ia~t~~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~t------~~~s~i~V  274 (343)
T COG3401         205 EY----GFIAQTTENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGET------TEASFIGV  274 (343)
T ss_pred             cc----cceeeccccchhhhhhccCceeEEEEEEEcCCcceeccCCccccccccCCcccccCCCce------eeeeeeeE
Confidence            11    111111222332222234777888888876444 4443332222222222211  22111      12334557


Q ss_pred             EEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638         177 KWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       177 ~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                      .|......    ....|.+.....+..-      .+...     .........+.++..|.+.|.+++..|.+.
T Consensus       275 ~~E~~~~~----~av~ytvyr~~~g~~~------~~f~i-----t~~d~~d~~~ltg~~~~y~v~~v~~~gls~  333 (343)
T COG3401         275 AAEQNQLR----QAVTYTVYRVEDGTPT------KFFTI-----TETDGQDNDMLTGVEYRYEVVAVDKAGLSS  333 (343)
T ss_pred             Eecccccc----eeeEEeeeeccCCCcc------eeeee-----eeccccchhhccccceeEEEEEeccccccc
Confidence            77776431    2345555544432210      11111     134566778889999999999999988753

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=96.62  E-value=0.0089  Score=37.74  Aligned_cols=33  Identities=33%  Similarity=0.429  Sum_probs=25.7

Q ss_pred             EEEEeee-----eeCCCEEEEEEEEcC-CCCcee-EEEEE
Q psy6638          19 ELGIANV-----LRQDSGTLSCLATNY-HGTAEM-TIQLL   51 (273)
Q Consensus        19 ~l~i~~~-----~~~~~~~y~~~a~n~-~g~~~~-~~~~~   51 (273)
                      .+.|.++     .+.|.|.|+|.|.|. .|...+ .+.+.
T Consensus        55 ~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~   94 (95)
T cd05722          55 SLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLT   94 (95)
T ss_pred             eEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEe
Confidence            4677776     588999999999999 998754 55543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=96.59  E-value=0.005  Score=37.15  Aligned_cols=29  Identities=34%  Similarity=0.382  Sum_probs=23.8

Q ss_pred             EEEEEeeeee----CCCEEEEEEEEcCCCCcee
Q psy6638          18 SELGIANVLR----QDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        18 ~~l~i~~~~~----~~~~~y~~~a~n~~g~~~~   46 (273)
                      ..|.|.++..    +|.|.|+|.|.|..|...+
T Consensus        39 g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733          39 GTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            3688888754    6899999999999998655

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=96.56  E-value=0.0068  Score=39.03  Aligned_cols=35  Identities=29%  Similarity=0.388  Sum_probs=28.8

Q ss_pred             eEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638           5 YTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      |.-|..+..+|   +|.|.+++.+|.|.|+|.+.+..+
T Consensus        60 ~~gR~~~~~ng---SL~I~~v~~~D~G~Y~~~v~~~~~   94 (105)
T cd05774          60 YSGRETIYPNG---SLLIQNVTQKDTGFYTLQTITTNF   94 (105)
T ss_pred             cCCcEEEeCCC---cEEEecCCcccCEEEEEEEEeCCc
Confidence            34456666677   899999999999999999998763

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=96.53  E-value=0.011  Score=37.35  Aligned_cols=37  Identities=22%  Similarity=0.269  Sum_probs=30.4

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLV   52 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~   52 (273)
                      ...+|.|.+++.+|.|.|+|...+ ..|+..+...+.+
T Consensus        58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            356899999999999999999754 7788877777654

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=96.50  E-value=0.0044  Score=38.03  Aligned_cols=30  Identities=23%  Similarity=0.182  Sum_probs=26.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~   46 (273)
                      ...|.|.++..+|.|.|+|.+.+..|...+
T Consensus        47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s   76 (83)
T cd05753          47 NSNLSIPQATLSDSGSYHCSGIIGSYDYSS   76 (83)
T ss_pred             CceEEECccCHHHCEEEEEEEEeCCceecC
Confidence            458999999999999999999999875543

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.45  E-value=0.0091  Score=37.60  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=28.3

Q ss_pred             cceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           2 FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         2 ~~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      |.||....   ..+...+|.|.+++.+|.|.|.|.+..
T Consensus        49 d~Rf~~~~---~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881          49 DSRFQLVN---FSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CcCEEEEe---CCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            56776542   246788999999999999999999875

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=96.44  E-value=0.017  Score=36.89  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=29.6

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLV   52 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~   52 (273)
                      ....|.|.+++.+|.|.|.|.+.+ ..|.....+.|.|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            355799999999999999999987 6676655666554

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.42  E-value=0.02  Score=36.32  Aligned_cols=37  Identities=22%  Similarity=0.312  Sum_probs=29.7

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLV   52 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~   52 (273)
                      ....|.|.+++.+|.|.|.|.+.+ ..|.......+.|
T Consensus        60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence            456899999999999999999875 5677666666654

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=96.39  E-value=0.017  Score=36.64  Aligned_cols=40  Identities=30%  Similarity=0.361  Sum_probs=26.3

Q ss_pred             cCCcEEEEEEee--eeeCCCEEEEEEEEcCCCCce-eEEEEEE
Q psy6638          13 EDGMISELGIAN--VLRQDSGTLSCLATNYHGTAE-MTIQLLV   52 (273)
Q Consensus        13 ~~~~~~~l~i~~--~~~~~~~~y~~~a~n~~g~~~-~~~~~~~   52 (273)
                      .++....+.|..  ...+|.|.|+|.|.|..|... ..+.+.+
T Consensus        57 ~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          57 PSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             cCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence            344333344432  368999999999999999844 3555543

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=96.36  E-value=0.0072  Score=35.87  Aligned_cols=28  Identities=21%  Similarity=0.134  Sum_probs=23.9

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~   46 (273)
                      .|.|.++..+|.|.|+|.|.|.......
T Consensus        37 ~L~I~~v~~~D~G~YtC~a~~~~~~~~~   64 (72)
T cd07702          37 SLVIKDVTEEDAGIYTILLGIKQYNLFK   64 (72)
T ss_pred             EEEECcCCHHHCEEEEEEEEccccceEe
Confidence            6999999999999999999997544433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>PLN02533 probable purple acid phosphatase

Probab=96.15  E-value=0.14  Score=42.16  Aligned_cols=93  Identities=22%  Similarity=0.198  Sum_probs=53.7

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEE----ecCCcccEEEcCCC
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE----LDNQYEGELRIPGL  230 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~L  230 (273)
                      .+..|..+++..  .+++++.|+|.-....   .+    .|+|-...+.-.....-......    ........+.|.+|
T Consensus        40 ~~~~P~qvhls~--~~~~~m~V~W~T~~~~---~~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L  110 (427)
T PLN02533         40 DPTHPDQVHISL--VGPDKMRISWITQDSI---PP----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPL  110 (427)
T ss_pred             CCCCCceEEEEE--cCCCeEEEEEECCCCC---CC----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCC
Confidence            334677888776  6788999999987642   11    34444322111000000001110    11222356789999


Q ss_pred             CccceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         231 TPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       231 ~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      +|++.|.++|-      ....++...|+|++.
T Consensus       111 ~p~T~Y~Yrvg------~~~~s~~~~F~T~p~  136 (427)
T PLN02533        111 KPNTVYYYKCG------GPSSTQEFSFRTPPS  136 (427)
T ss_pred             CCCCEEEEEEC------CCCCccceEEECCCC
Confidence            99999999984      122466788998764

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=96.12  E-value=0.25  Score=38.31  Aligned_cols=164  Identities=11%  Similarity=0.034  Sum_probs=89.2

Q ss_pred             eccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceE
Q psy6638          68 SSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQ  147 (273)
Q Consensus        68 ~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~  147 (273)
                      ....+.+-|.+..  +-+...|.|+.......+.+...  ..++-.-.+...++.++..|.+.|.+.+..+.-..+....
T Consensus        82 ~~~~~~~~w~~~~--d~~~~~Y~i~~~~gD~~f~r~~~--~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gV  157 (343)
T COG3401          82 RPKSVKVFWSPHP--DVSVGKYIIQRQNGDGKFLRTGL--VKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSFTGV  157 (343)
T ss_pred             CcceeeecccccC--CCCCCeEEEEEecCchhhhhhhH--HHhccchhheecccccccceeeeEEeecccccceeeeeee
Confidence            4556899999754  33567899988765543221111  1111112334457899999999999987766333332111


Q ss_pred             EEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEc
Q psy6638         148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRI  227 (273)
Q Consensus       148 ~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  227 (273)
                      -.+....|+ .-.++++..  ...+.+.|+|+.++..+      .|+|+-...+......   ..+    ..  ++.+..
T Consensus       158 E~~~~~~P~-ei~~~~~~~--d~~~~i~ls~dg~~~~~------yy~IY~~~~g~e~~~~---ia~----t~--~n~y~d  219 (343)
T COG3401         158 EATPKAEPK-EITNVRVSF--DLGNNIELSEDGSEAED------YYRIYASDSGNEEYGF---IAQ----TT--ENSYYD  219 (343)
T ss_pred             ecccccCCc-eeeeeeeec--CCCCcceeeccCccccc------eEEEeccCCccccccc---eee----cc--ccchhh
Confidence            111122221 222344544  67788999999987621      7787766655432111   111    11  122222


Q ss_pred             CCCCccceEEEEEEEecCC-CcCCCCc
Q psy6638         228 PGLTPYTKYAIVVRGYNSV-GKGPFSE  253 (273)
Q Consensus       228 ~~L~p~~~Y~~~v~a~n~~-g~~~~s~  253 (273)
                      .--.-|..|.+.|.+++.. .++..+.
T Consensus       220 ~~eglga~~~y~VTtVd~~~~es~lp~  246 (343)
T COG3401         220 VKEGLGAVEYYKVTTVDNTGFESDLPN  246 (343)
T ss_pred             hhhccCceeEEEEEEEcCCcceeccCC
Confidence            2222377888888888744 4465554

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=96.12  E-value=0.015  Score=35.01  Aligned_cols=28  Identities=29%  Similarity=0.304  Sum_probs=22.4

Q ss_pred             EEEEeeeeeC----CCEEEEEEEEcCCCCcee
Q psy6638          19 ELGIANVLRQ----DSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        19 ~l~i~~~~~~----~~~~y~~~a~n~~g~~~~   46 (273)
                      .|.|..+...    |.|.|+|.|.|..|...+
T Consensus        40 ~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874          40 TLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            5777766643    789999999999998765

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=96.08  E-value=0.02  Score=34.54  Aligned_cols=29  Identities=31%  Similarity=0.274  Sum_probs=23.1

Q ss_pred             EEEEEeeeee----CCCEEEEEEEEcCCCCcee
Q psy6638          18 SELGIANVLR----QDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        18 ~~l~i~~~~~----~~~~~y~~~a~n~~g~~~~   46 (273)
                      .+|.|..+..    +|.|.|+|.|.|..|...+
T Consensus        39 ~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875          39 GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             ceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            3788887642    3689999999999997765

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=96.06  E-value=0.01  Score=37.10  Aligned_cols=28  Identities=39%  Similarity=0.580  Sum_probs=23.9

Q ss_pred             EEEEeeeee-CCCEEEEEEEEcCCCCcee
Q psy6638          19 ELGIANVLR-QDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        19 ~l~i~~~~~-~~~~~y~~~a~n~~g~~~~   46 (273)
                      .|.|.++.. .|.|.|+|.|.|..|...+
T Consensus        59 ~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          59 NLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             EEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            688888774 8999999999999997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=96.00  E-value=0.03  Score=35.51  Aligned_cols=38  Identities=26%  Similarity=0.447  Sum_probs=32.8

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      -.+.|.+..+...+.|.|+|.|.|..+.....+.+.++
T Consensus        63 Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~  100 (101)
T cd05860          63 YVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence            46789999999999999999999998888777776653

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=95.92  E-value=0.013  Score=33.15  Aligned_cols=26  Identities=42%  Similarity=0.565  Sum_probs=23.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      ...|.|.++...|.|.|+|.+.|..|
T Consensus        38 ~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       38 GSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CcEEEEeeCCcccCEEEEEEEecCCC
Confidence            44799999999999999999998765

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=95.90  E-value=0.024  Score=35.25  Aligned_cols=35  Identities=26%  Similarity=0.214  Sum_probs=26.4

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCC-ceeEEEEEEe
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGT-AEMTIQLLVQ   53 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~-~~~~~~~~~~   53 (273)
                      .|.|.++.++|.|.|+|.|.+..+. ......+.|.
T Consensus        52 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~   87 (89)
T cd04979          52 GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL   87 (89)
T ss_pred             CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence            4999999999999999999876443 3345555543

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>smart00410 IG_like Immunoglobulin like

Probab=95.89  E-value=0.064  Score=32.36  Aligned_cols=35  Identities=49%  Similarity=0.594  Sum_probs=28.5

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      ...|.|.++...|.|.|.|.+.+..+.....+.+.
T Consensus        50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~   84 (86)
T smart00410       50 NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT   84 (86)
T ss_pred             eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence            57899999999999999999998776655554443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=95.89  E-value=0.064  Score=32.36  Aligned_cols=35  Identities=49%  Similarity=0.594  Sum_probs=28.5

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      ...|.|.++...|.|.|.|.+.+..+.....+.+.
T Consensus        50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~   84 (86)
T smart00409       50 NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT   84 (86)
T ss_pred             eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence            57899999999999999999998776655554443

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=95.89  E-value=0.031  Score=36.73  Aligned_cols=28  Identities=21%  Similarity=0.247  Sum_probs=23.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGT   43 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~   43 (273)
                      ....|.|.+++.+|.|.|.|.+.|..+.
T Consensus        77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          77 RDASILIWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             CceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence            3567999999999999999999986543

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=95.78  E-value=0.038  Score=36.35  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=22.8

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      .+.|.|.+++.+|.|.|.|.+.|.-.
T Consensus        79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          79 DASIVIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeEEEEeeCCcccCEEEEEEEEeCCC
Confidence            46899999999999999999987543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=95.75  E-value=0.036  Score=33.75  Aligned_cols=29  Identities=24%  Similarity=0.357  Sum_probs=23.8

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~   46 (273)
                      ..+.|.|.++.  |.|.|.|.|.|.+|...+
T Consensus        47 ~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749          47 SPSVLNVPGLN--ETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCCEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence            44579998874  679999999999997765

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>KOG4806|consensus

Probab=95.74  E-value=0.72  Score=36.05  Aligned_cols=136  Identities=21%  Similarity=0.205  Sum_probs=77.1

Q ss_pred             ecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEec---CCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEE
Q psy6638         118 LQPLLPATQYQVRLLAENPLGMSETGAELQASTL---EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYD  194 (273)
Q Consensus       118 ~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~---~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~  194 (273)
                      -..+.++..|.++++..|+.-.- ...-+...+.   ..-| .-|.+-++..-...-++.+|.|....+.     -.+|-
T Consensus       288 Qfvv~~~~~~~~rf~~~ndde~~-~~v~V~aSt~~t~~~~P-~LP~dTtVk~v~r~CSsAtIaW~gs~d~-----~~kyC  360 (454)
T KOG4806|consen  288 QFVVLPGERYLMRFEPSNDDEAL-QKVMVAASTEATFRDLP-ELPQDTTVKNVRRRCSSATIAWNGSPDE-----ELKYC  360 (454)
T ss_pred             EEEecCCCceEEEEEecCCchhh-heeEeeeecccccCcCC-CCCCCceEeeeccccchheeeeccCcch-----heeEE
Confidence            34577899999999998875321 1111222221   1223 3455544433114567889999988763     24777


Q ss_pred             EEEEEcCCCCcc---------------ceeeeeeeEE------ecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCc
Q psy6638         195 VGYQISSGSSLA---------------LSSYTLKSVE------LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE  253 (273)
Q Consensus       195 v~~~~~~~~~~~---------------~~~~~~~~~~------~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~  253 (273)
                      |+.+...+.+..               ...+..-...      .....-..-+|.||.||..|.+.|.|.-..|..-+-.
T Consensus       361 Iy~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyq  440 (454)
T KOG4806|consen  361 IYVFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQ  440 (454)
T ss_pred             EEEecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCccccce
Confidence            777665432210               0000000000      0111223468999999999999999998887766555


Q ss_pred             cEEEEcC
Q psy6638         254 PFIARTN  260 (273)
Q Consensus       254 ~~~~~t~  260 (273)
                      .+.+.|.
T Consensus       441 a~~v~t~  447 (454)
T KOG4806|consen  441 ALTVHTA  447 (454)
T ss_pred             eEEEEec
Confidence            5666654

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=95.69  E-value=0.035  Score=34.94  Aligned_cols=28  Identities=29%  Similarity=0.332  Sum_probs=24.7

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCce
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAE   45 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~   45 (273)
                      +.|.|.++.++|.|.|+|.+.+..|...
T Consensus        55 ~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897          55 TYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             CEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            4699999999999999999999876653

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=95.63  E-value=0.027  Score=33.32  Aligned_cols=32  Identities=38%  Similarity=0.527  Sum_probs=25.5

Q ss_pred             EEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           8 REQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         8 ~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ..........+.|.|.++..+|.|.|+|.|.|
T Consensus        44 ~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   44 SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            33334445577899999999999999999986

...

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=95.62  E-value=0.026  Score=36.56  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=28.2

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYH   41 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~   41 (273)
                      +||.+...  .....+.|.|.+++.+|.|.|.|.+.+..
T Consensus        57 ~r~~~~~~--~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~   93 (109)
T cd04983          57 GRFSATLD--KSRKSSSLHISAAQLSDSAVYFCALSESG   93 (109)
T ss_pred             CcEEEEEc--ccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            45554332  23467899999999999999999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=95.53  E-value=0.024  Score=34.30  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.3

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      ...|.|.++ .+|.|.|+|.|.|.
T Consensus        46 ~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          46 TNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCeEEEeec-ccCCEEeEEECCCC
Confidence            447999999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=95.51  E-value=0.065  Score=33.84  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=27.6

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQL   50 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~   50 (273)
                      ...+|.|.+++.+|.|.|+|...+ ..|...+.+.+
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            346899999999999999999876 46666665544

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=95.33  E-value=0.09  Score=33.28  Aligned_cols=38  Identities=26%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLV   52 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~   52 (273)
                      ...+.|.|.+++.+|.|.|.|.... ..|.....+.|.|
T Consensus        58 ~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          58 LNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             CCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            3567899999999999999999764 5555555555543

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=95.26  E-value=0.087  Score=34.63  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      ..++.|.+++.+|.|.|+|.+.|.-+
T Consensus        79 daSI~I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          79 DGSIVIHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             eeEEEEccCCcccCEEEEEEEEcCCC
Confidence            45899999999999999999998654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>KOG3632|consensus

Probab=95.14  E-value=0.024  Score=49.81  Aligned_cols=172  Identities=15%  Similarity=0.061  Sum_probs=100.0

Q ss_pred             EEEeeccEEEEEEeCCCC--CCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCC-CCCeEEEEEEEeCCCCCC
Q psy6638          64 ITEESSRSLQISWTAPYS--GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLL-PATQYQVRLLAENPLGMS  140 (273)
Q Consensus        64 ~~~~~~~~~~l~W~~~~~--~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~y~~~v~a~~~~g~~  140 (273)
                      +....+.++.+.|.+|..  ...++..|.+..-..-       ......++.+...++.|. .+..|.+.|.+....|..
T Consensus       586 ~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~el-------rq~l~~gs~tka~~E~ld~~a~s~~isvq~ltSrGsq  658 (1335)
T KOG3632|consen  586 AVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLMEL-------RQTLYAGSLTKAMQESLDNSAHSGYISVQRLTSRGSQ  658 (1335)
T ss_pred             hhhhhccceeeeccCCCCCCccccceeeeeecchhh-------hhhcccccchHHHHhhccccCCceeeehhhhhccCCC
Confidence            344567789999998753  2334444544322110       111222333333344443 233577888888888865


Q ss_pred             CCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCC
Q psy6638         141 ETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQ  220 (273)
Q Consensus       141 ~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~  220 (273)
                      .....+ ..+...++ ..|.++.+..  .+..+..++|-+-...       .-++.|......            .....
T Consensus       659 d~lrc~-Llvgg~a~-vvpsqlrv~n--~tqtSa~itwvp~nsn-------~~Hviyln~eE~------------~ps~a  715 (1335)
T KOG3632|consen  659 DQLRCI-LLVGGAAP-VVPSQLRVWN--ATQTSAMITWVPFNSN-------FLHVIYLNAEEP------------RPSVA  715 (1335)
T ss_pred             Ccceee-Eecccccc-ccchhhhhhh--hhchhhheeeeecCCC-------cceeeecCCccC------------CCchh
Confidence            544433 22333344 4777888888  8999999999987542       223444333221            11112


Q ss_pred             cccEEEcCCCCccceEEEEEEEecCC-C--------cCCCCccEEEEcCCCCCc
Q psy6638         221 YEGELRIPGLTPYTKYAIVVRGYNSV-G--------KGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       221 ~~~~~~i~~L~p~~~Y~~~v~a~n~~-g--------~~~~s~~~~~~t~~~~P~  265 (273)
                      ....+++.+|.|++.|.++|-+.-.. +        .+.....+.|+|.+..|+
T Consensus       716 ~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGpp  769 (1335)
T KOG3632|consen  716 EMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPP  769 (1335)
T ss_pred             hhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCC
Confidence            23467899999999999999988651 1        122355688888876554

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=95.04  E-value=0.1  Score=33.24  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=27.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      .|.|..+..+|.|.|+|.+.|.-......+.+.
T Consensus        71 ~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          71 SIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             EEEEEeCChhhCeEEEEEECCCCcceEEEEEEE
Confidence            699999999999999999999876665555443

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=95.01  E-value=0.075  Score=32.87  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .|.|.++..+|.|.|+|.|.+.
T Consensus        49 ~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873          49 GLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             cEEEeCCCHHHCEEEEEEEEec
Confidence            4999999999999999999876

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>KOG4228|consensus

Probab=95.00  E-value=0.31  Score=43.98  Aligned_cols=202  Identities=17%  Similarity=0.133  Sum_probs=106.0

Q ss_pred             EEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecC
Q psy6638          32 TLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG  111 (273)
Q Consensus        32 ~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~  111 (273)
                      .|+|.+....|.+.....+.+..-|..|....+.........+.|.....   ....|.+.++.........    ... 
T Consensus         1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t---~~~~y~v~~~~~~s~~~~~----~~~-   72 (1087)
T KOG4228|consen    1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST---WPNYYQVIFKALSSGYGYI----DVD-   72 (1087)
T ss_pred             CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC---ChhhhheeeeEeccCccee----ecc-
Confidence            38899998888888888888876666555555666677778888876532   2334444444322211100    000 


Q ss_pred             CccEEEecCCCCCCeEE----------------------------------------------------EEEEEeCCCCC
Q psy6638         112 SQTSATLQPLLPATQYQ----------------------------------------------------VRLLAENPLGM  139 (273)
Q Consensus       112 ~~~~~~~~~l~~~~~y~----------------------------------------------------~~v~a~~~~g~  139 (273)
                      ....+....+.+...+.                                                    +.+.+....|.
T Consensus        73 ~~~~~s~~~~~~~~~~~~~evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (1087)
T KOG4228|consen   73 LTTRLSYPCLSPPSFLELVEVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATVGPLAIASPGL  152 (1087)
T ss_pred             ceeecccCCCCCcchhhhhhcccccccccccccCCccccccccccccchhhhhhhhhhhccCcccccccccccccCCccc
Confidence            00001111111111111                                                    11222333333


Q ss_pred             CCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecC
Q psy6638         140 SETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDN  219 (273)
Q Consensus       140 ~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~  219 (273)
                      +..+..+.+.+....|..+.     ..  .....++++|.++..    ..+..|.+.+...+...         ......
T Consensus       153 ~~~~t~i~i~~~~~~p~~~~-----~~--~~~~~it~~w~~~~~----~~~~~ykl~~~~~d~~~---------~~~v~~  212 (1087)
T KOG4228|consen  153 GPPSTYIQITTNANSPIQPG-----EE--EEYTTITGSWSPPHA----VSLDTYKLLHLDPDTGY---------EISVTL  212 (1087)
T ss_pred             CCCCceEEEeccCCCCCCCC-----cc--eEEEEEEecCCCCCc----ccchhhhhhhcCCcccc---------eeeeec
Confidence            33333444444444443332     22  456788999998864    45678888877663221         111111


Q ss_pred             CcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         220 QYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       220 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      .........++.+...|.++..+....+.+.....+..++..
T Consensus       213 ~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~~  254 (1087)
T KOG4228|consen  213 TPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQLQ  254 (1087)
T ss_pred             cCCCCCcccCCCCcccccccccCccccccCCCCcceEEEehh
Confidence            112345556677778888888888776666555556665543

>PHA03376 BARF1; Provisional

Probab=94.83  E-value=0.19  Score=35.60  Aligned_cols=37  Identities=8%  Similarity=-0.049  Sum_probs=29.4

Q ss_pred             eEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638           5 YTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYH   41 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~   41 (273)
                      |.-+..+.+++...+|.|.+++++|+|.|+|...-..
T Consensus        74 yRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge  110 (221)
T PHA03376         74 FRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGE  110 (221)
T ss_pred             cccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCC
Confidence            3344455566778899999999999999999988654

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=94.79  E-value=0.19  Score=32.18  Aligned_cols=81  Identities=16%  Similarity=0.256  Sum_probs=53.2

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecC-CcccE-----EEcC
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDN-QYEGE-----LRIP  228 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~i~  228 (273)
                      |+..|.++..-.  .+...++.-|++....  + .-..|.+.|...+..        ++....-. ....+     ..+.
T Consensus         7 ~p~~P~~~~C~S--~~~etftC~W~~g~~~--~-l~~~y~L~Y~~~~~~--------~~eCp~~~~~~~ns~~~~~C~F~   73 (104)
T PF09067_consen    7 PPEKPENLKCFS--REMETFTCFWEPGSEG--N-LPTNYTLFYKKEGEE--------WKECPDYSTSGPNSTVRHICYFP   73 (104)
T ss_dssp             HCCCCEEEEEEB--SSSS-EEEEEEEESSS--T-STCEEEEEEEETTSE--------EEEESESSTTETTEEEEEEEEE-
T ss_pred             CCCCCccCccCC--CCCCcEEEEeeCCCCC--C-CCCcEEEEEEeCCCC--------CccCCCeEecCCCCceeEEEEcC
Confidence            556888888877  7888999999998763  2 223499999987631        22322111 11122     3444


Q ss_pred             --CCCccceEEEEEEEecCCCc
Q psy6638         229 --GLTPYTKYAIVVRGYNSVGK  248 (273)
Q Consensus       229 --~L~p~~~Y~~~v~a~n~~g~  248 (273)
                        +..-.+.|.++|.|.|..|.
T Consensus        74 ~~~t~lf~~y~i~V~a~~~~~~   95 (104)
T PF09067_consen   74 KSDTSLFVPYCIQVEATNALGS   95 (104)
T ss_dssp             CCGCSSSSEEEEEEEEEETTEE
T ss_pred             CCCeEEEEEEEEEEEeccCCCc
Confidence              67788899999999998764

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=94.45  E-value=0.064  Score=33.83  Aligned_cols=26  Identities=35%  Similarity=0.479  Sum_probs=23.2

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTA   44 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~   44 (273)
                      .|.|.+++++|.|.|.|.|.|.....
T Consensus        61 ~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          61 NLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             cEEEeecCHhhCceeEEEEEecccCC
Confidence            79999999999999999999976443

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=94.40  E-value=0.053  Score=34.77  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=24.2

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      ....|.|.+++++|.|.|.|.+.+..+
T Consensus        65 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          65 SSFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            577999999999999999999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=94.38  E-value=0.084  Score=33.47  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=26.2

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +||...    .++....|.|.+++++|.|.|.|.+.+
T Consensus        52 ~rf~~~----~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   84 (98)
T cd04984          52 DRFSGS----KSGNTASLTISGAQTEDEADYYCQVWD   84 (98)
T ss_pred             CCEEEE----ccCCEEEEEECCCChhhCEEEEEEEcc
Confidence            355543    355678899999999999999998864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=94.14  E-value=0.089  Score=33.10  Aligned_cols=25  Identities=36%  Similarity=0.202  Sum_probs=22.3

Q ss_pred             EEEEeeeeeCCCE-EEEEEEEcCCCC
Q psy6638          19 ELGIANVLRQDSG-TLSCLATNYHGT   43 (273)
Q Consensus        19 ~l~i~~~~~~~~~-~y~~~a~n~~g~   43 (273)
                      .|.|.++++.|.| .|.|.|.|....
T Consensus        59 nL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          59 NLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             eEEEEEEehhhCCCCeEEEEEccccc
Confidence            8999999999999 899999987533

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=93.98  E-value=0.047  Score=31.30  Aligned_cols=19  Identities=47%  Similarity=0.807  Sum_probs=17.7

Q ss_pred             EEEEeeeeeCCCEEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLA   37 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a   37 (273)
                      .|.|.++.++|.|.|+|.|
T Consensus        46 ~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   46 RLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEEESSCTGGGTEEEEEEE
T ss_pred             EEEEccCCHHHCEEEEEEC
Confidence            3999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=93.71  E-value=0.11  Score=33.58  Aligned_cols=27  Identities=22%  Similarity=0.251  Sum_probs=23.2

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .+....|.|.+++++|.|.|.|.+.+.
T Consensus        67 ~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          67 SGTDFTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             cCCEEEEEECCCChHHCEEEEEEEeCC
Confidence            456778999999999999999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.69  E-value=0.074  Score=34.50  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=23.3

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      ....+|.|.+++.+|.|.|.|.+...
T Consensus        76 ~~~~sL~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   76 QNNFSLTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             TTEEEEEESSESGGGEEEEEEEEEES
T ss_pred             CCeEEEEECCCCcCcCEEEEEEEEEC
Confidence            34779999999999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>smart00406 IGv Immunoglobulin V-Type

Probab=93.67  E-value=0.086  Score=31.74  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=20.1

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCL   36 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~   36 (273)
                      ....+|.|.+++++|.|.|.|.
T Consensus        59 ~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       59 KNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CCEEEEEEcCCCHHHCEEEEEc
Confidence            5678899999999999999995

>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology

Probab=93.59  E-value=1.2  Score=28.34  Aligned_cols=79  Identities=16%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             CcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEec-CCccEEEecCCCC----CCeEEEEEEE
Q psy6638          59 PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVP-GSQTSATLQPLLP----ATQYQVRLLA  133 (273)
Q Consensus        59 p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~----~~~y~~~v~a  133 (273)
                      |+++...-.....+.++|.+..... +-+.|.+.++................ +....+.+.....    ...|.+.|.+
T Consensus         2 ~~nlsC~~~~~~~m~CtW~~g~~~~-~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~~   80 (99)
T PF09240_consen    2 PQNLSCFIYNLEYMNCTWEPGKEAP-PDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVNG   80 (99)
T ss_dssp             -EEEEEEEETTTEEEEEEECCTTCS-TTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEEE
T ss_pred             CeeCEEEEECCEEEEEEECCCCCCC-CcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEEe
Confidence            5667766667889999999764433 45689999888654322222222222 2344555554444    3468888888


Q ss_pred             eCCCC
Q psy6638         134 ENPLG  138 (273)
Q Consensus       134 ~~~~g  138 (273)
                      .+..|
T Consensus        81 ss~~~   85 (99)
T PF09240_consen   81 SSSAG   85 (99)
T ss_dssp             EETTE
T ss_pred             ccCCC
Confidence            77655

They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=93.58  E-value=0.16  Score=30.36  Aligned_cols=23  Identities=48%  Similarity=0.637  Sum_probs=20.6

Q ss_pred             EEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          20 LGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        20 l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      +.|..+..++.|.|+|.+.+..+
T Consensus        47 ~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen   47 LFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             EEESSEEGGGTEEEEEEEEETTE
T ss_pred             eeeeeeccccCEEEEEEEEeCCC
Confidence            77889999999999999998665

...

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=93.53  E-value=0.38  Score=29.58  Aligned_cols=26  Identities=27%  Similarity=0.377  Sum_probs=21.1

Q ss_pred             EEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638          20 LGIANVLRQDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        20 l~i~~~~~~~~~~y~~~a~n~~g~~~~   46 (273)
                      |.|..+.++|.|.|.|.+. ..|....
T Consensus        49 LlI~~~~~~dsG~Y~C~s~-E~gf~~~   74 (85)
T cd05872          49 LLILVTSPEHSGTYRCYSE-EEGFQQL   74 (85)
T ss_pred             CEEEECCHhhCEEEEEEEe-cCCCeEE
Confidence            8899999999999999987 3444443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=93.43  E-value=0.17  Score=31.59  Aligned_cols=26  Identities=15%  Similarity=0.240  Sum_probs=22.8

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      +....|.|.++.++|.|.|+|...+.
T Consensus        50 ~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          50 QNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             ceeEEEEccCCChhHCEEEEEEEECC
Confidence            44567999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=93.40  E-value=0.15  Score=33.14  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=23.1

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYH   41 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~   41 (273)
                      ..++|.|.+++++|.|.|.|.+.+..
T Consensus        70 ~~~~L~I~~~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          70 TRSSLTIKSAEPEDSAVYLCASSLGG   95 (110)
T ss_pred             CccEEEECCCChhhCEEEEEEeeCCC
Confidence            57899999999999999999988643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>KOG4152|consensus

Probab=93.35  E-value=0.1  Score=42.76  Aligned_cols=33  Identities=27%  Similarity=0.319  Sum_probs=30.4

Q ss_pred             CCCCccceEEEEEEEecCCCcCCCCccEEEEcC
Q psy6638         228 PGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTN  260 (273)
Q Consensus       228 ~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~  260 (273)
                      ..|.+|+.|.|+|.|+|..|.|++|....+.|.
T Consensus       652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc  684 (830)
T KOG4152|consen  652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTC  684 (830)
T ss_pred             cccccccceeeeeeeeeccCCCchhhheeeeec
Confidence            468899999999999999999999999998886

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=93.11  E-value=0.2  Score=32.91  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=21.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ....|.|.+++++|.|.|.|.+..
T Consensus        75 ~~~~L~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          75 STSTLTIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             CEEEEEEEECCHHHCEEEEEEEec
Confidence            678999999999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>KOG0613|consensus

Probab=92.75  E-value=1.5  Score=40.56  Aligned_cols=214  Identities=17%  Similarity=0.174  Sum_probs=103.1

Q ss_pred             EEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC-CCCcceEEEEeeccEEEEEEeCCC-CCCccceEEEEEEEeCC
Q psy6638          20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP-EAPKNIRITEESSRSLQISWTAPY-SGNTAITQYIIQYKSSE   97 (273)
Q Consensus        20 l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P-~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~   97 (273)
                      .-+.+...++.+.+...-.+.++ ......+.....| .+|.+-.........+...|..+. ++......|.++.+..+
T Consensus       104 ~~v~~~~ad~~~~~~~e~~~~i~-~~~~~~v~~~e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g  182 (1205)
T KOG0613|consen  104 WAVGDEYADDRPIHLVERKALID-VVPSPEVCQQEKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAG  182 (1205)
T ss_pred             cccccccccccccccccccccCC-ccccchhhhhcCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEecc
Confidence            33344444445444444444444 2222222223334 455554455566777888898775 45556778899888765


Q ss_pred             C-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEE
Q psy6638          98 E-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLI  176 (273)
Q Consensus        98 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l  176 (273)
                      . .|....... ..   .+ .+....    |.++++++-..|+...-...........|...|..-....  ....-+.+
T Consensus       183 ~s~~~~~l~~~-~~---~s-~~~~a~----~e~~v~~v~s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e--~s~~~i~~  251 (1205)
T KOG0613|consen  183 RSPWLKRLTQP-TD---DS-TDTDAH----YESRVRAVVSAGQPEPLERWEILGELIAPGSAPSMSVTLE--ASDRKIQL  251 (1205)
T ss_pred             CCCcccccccc-cC---Cc-ceeccc----cceeEEEEEecCCCccchhhhhcccccCCCCccccccccc--hhheeeeE
Confidence            4 444222111 10   11 111122    4555555444443322221111111122333332211222  24456778


Q ss_pred             EEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCC
Q psy6638         177 KWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS  252 (273)
Q Consensus       177 ~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s  252 (273)
                      .|..+.+.. .-.+.+|.+......+..      .+......+....+++...-..+..|.+++...-..|.+.+-
T Consensus       252 ~l~~~~G~~-~~~~~~~l~e~~~~~~~~------t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~  320 (1205)
T KOG0613|consen  252 TLRAPRGPY-SAHILGYLIEQRKHKGGN------TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPG  320 (1205)
T ss_pred             EeecCCCch-HHHHhcchhhhcccCCCc------cccccccCCccccceeeecccCCcccceeeeEEeeccccccC
Confidence            888877632 234556665554421110      222333334445566666666778888888888776765443

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=92.30  E-value=0.21  Score=31.56  Aligned_cols=27  Identities=15%  Similarity=0.258  Sum_probs=23.5

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .+..+.|.|.+++.+|.|.|.|.+...
T Consensus        60 ~~~~~~L~I~~v~~~DsG~Y~C~~~~~   86 (98)
T cd05716          60 DNGVFTVTLNQLRKEDAGWYWCGVGDD   86 (98)
T ss_pred             CCCEEEEEEcCCCHHHCEEEEEEcccC
Confidence            356789999999999999999988764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=92.27  E-value=0.27  Score=32.28  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=26.6

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +||.+...  ..+..+.|.|.+++.+|.|.|.|.+..
T Consensus        59 ~R~~~~~~--~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   93 (116)
T cd07706          59 GRYSVNFQ--KAQKSISLTISALQLEDSAKYFCALST   93 (116)
T ss_pred             CeEEEEEe--ccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence            56655321  234567899999999999999999885

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=91.97  E-value=0.3  Score=31.53  Aligned_cols=27  Identities=33%  Similarity=0.439  Sum_probs=23.1

Q ss_pred             ecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          12 LEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      ...+..+.|.|.+++++|.|.|.|...
T Consensus        66 ~~~~~~~~L~I~~~~~~Dsg~YyCa~~   92 (107)
T cd07700          66 TSDSSRYRLHINRVKPEDSGTYFCMTV   92 (107)
T ss_pred             ECCCCEEEEEECCCCHHHCEEEEEeEc
Confidence            345567889999999999999999975

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=91.94  E-value=0.21  Score=32.09  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=22.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +.....|.|.+++.+|.|.|.|.+.+
T Consensus        65 ~~~~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          65 SSNSFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             cCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            45778899999999999999998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=91.87  E-value=0.39  Score=31.74  Aligned_cols=27  Identities=19%  Similarity=0.028  Sum_probs=23.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      ....+.|.|.+++.+|+|.|.|.....
T Consensus        76 ~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          76 GKKNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             CCCEEEEEEccCChhhCeEEEEEEEcC
Confidence            445678999999999999999987653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PHA02633 hypothetical protein; Provisional

Probab=91.30  E-value=0.98  Score=25.60  Aligned_cols=40  Identities=23%  Similarity=0.261  Sum_probs=31.4

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQET   55 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~   55 (273)
                      ....|-|-+...+|+|.|.|+.+|..-....++.+.+...
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            4457999999999999999999987666666776666433

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=90.74  E-value=0.58  Score=26.96  Aligned_cols=26  Identities=31%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             EEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638         224 ELRIPGLTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       224 ~~~i~~L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                      .+.+.+|.|| .|.|.|+|.+..|...
T Consensus        30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~~   55 (66)
T PF07495_consen   30 SISYTNLPPG-KYTLEVRAKDNNGKWS   55 (66)
T ss_dssp             EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred             EEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence            8888899888 8999999999877643

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PLN02533 probable purple acid phosphatase

Probab=90.61  E-value=8.5  Score=32.03  Aligned_cols=87  Identities=18%  Similarity=0.284  Sum_probs=49.1

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCcc--ceEE-------ecCCccEEEecCCCCCC
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQP--LKII-------VPGSQTSATLQPLLPAT  125 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~l~~~~  125 (273)
                      .+..|..+.+.-...+++.++|...... .+.    |+|-...+......  ....       .++......|.+|+|++
T Consensus        40 ~~~~P~qvhls~~~~~~m~V~W~T~~~~-~~~----V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T  114 (427)
T PLN02533         40 DPTHPDQVHISLVGPDKMRISWITQDSI-PPS----VVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNT  114 (427)
T ss_pred             CCCCCceEEEEEcCCCeEEEEEECCCCC-CCE----EEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCCC
Confidence            4557777777766788999999976432 122    33433221110000  0000       11223457899999999


Q ss_pred             eEEEEEEEeCCCCCCCCCcceEEEecC
Q psy6638         126 QYQVRLLAENPLGMSETGAELQASTLE  152 (273)
Q Consensus       126 ~y~~~v~a~~~~g~~~~s~~~~~~~~~  152 (273)
                      .|.|+|-.      ...+....|++.+
T Consensus       115 ~Y~Yrvg~------~~~s~~~~F~T~p  135 (427)
T PLN02533        115 VYYYKCGG------PSSTQEFSFRTPP  135 (427)
T ss_pred             EEEEEECC------CCCccceEEECCC
Confidence            99999831      1224556777743

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=90.25  E-value=2.3  Score=30.34  Aligned_cols=41  Identities=22%  Similarity=0.221  Sum_probs=29.4

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc-CCC-CceeEEEEEEec
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN-YHG-TAEMTIQLLVQE   54 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n-~~g-~~~~~~~~~~~~   54 (273)
                      .-..+.+.|.++..+|.|.|.|.... ..| .......+.+..
T Consensus        81 s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987         81 SFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             CCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence            33557899999999999999999764 345 444455555543

>KOG4806|consensus

Probab=89.89  E-value=7.7  Score=30.68  Aligned_cols=115  Identities=16%  Similarity=0.243  Sum_probs=65.4

Q ss_pred             eeeeeCCCEEEEEEEEcCCCCcee-----EEEEEEecCCCCCcceEEEEe--eccEEEEEEeCCCCCCccceEEEEEEEe
Q psy6638          23 ANVLRQDSGTLSCLATNYHGTAEM-----TIQLLVQETPEAPKNIRITEE--SSRSLQISWTAPYSGNTAITQYIIQYKS   95 (273)
Q Consensus        23 ~~~~~~~~~~y~~~a~n~~g~~~~-----~~~~~~~~~P~~p~~~~~~~~--~~~~~~l~W~~~~~~~~~~~~y~v~~~~   95 (273)
                      ..+.+...|.++....|..-....     +...+....|..|++-.+..+  .-++.++.|....+.   -..|-|+.+.
T Consensus       289 fvv~~~~~~~~rf~~~ndde~~~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~---~~kyCIy~~~  365 (454)
T KOG4806|consen  289 FVVLPGERYLMRFEPSNDDEALQKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDE---ELKYCIYVFN  365 (454)
T ss_pred             EEecCCCceEEEEEecCCchhhheeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcch---heeEEEEEec
Confidence            345667788888887775433211     222233466888887666554  456789999864321   3456665543


Q ss_pred             CCC--C------------------------CCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          96 SEE--M------------------------WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        96 ~~~--~------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ..+  .                        |.........+.+...-+|.+|.|+..|.+-|.|.-..|..
T Consensus       366 ~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~  436 (454)
T KOG4806|consen  366 LPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKP  436 (454)
T ss_pred             ccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcc
Confidence            211  0                        00000001111122334678999999999999998766644

>TIGR00868 hCaCC calcium-activated chloride channel protein 1

Probab=89.44  E-value=3  Score=37.68  Aligned_cols=96  Identities=13%  Similarity=0.160  Sum_probs=53.3

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCC---Cccc-eeeeeeeE-EecCCcccE--EEc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGS---SLAL-SSYTLKSV-ELDNQYEGE--LRI  227 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~---~~~~-~~~~~~~~-~~~~~~~~~--~~i  227 (273)
                      ||....++++..   ....+.|+|..|.++--.|...+|.|.|...-..   +... ...+-... ....+....  +..
T Consensus       755 PP~rItDL~~~~---~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~  831 (863)
T TIGR00868       755 PPSKITDLEAGF---QGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKP  831 (863)
T ss_pred             CCccceeeEEee---cCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeC
Confidence            444455666533   4556999999998865567888999998654110   0000 00000000 001111222  333


Q ss_pred             CCC--CccceEEEEEEEecCCCc-CCCCc
Q psy6638         228 PGL--TPYTKYAIVVRGYNSVGK-GPFSE  253 (273)
Q Consensus       228 ~~L--~p~~~Y~~~v~a~n~~g~-~~~s~  253 (273)
                      .+.  +.++.|.|-|+|++..|. |+.|.
T Consensus       832 ~~~~~~~~~~~~~ai~a~d~~~~~s~~sn  860 (863)
T TIGR00868       832 EGIPIENGTDLFIAVQAIDKANLTSEVSN  860 (863)
T ss_pred             CcccccCCeEEEEEEEEEccccccccccc
Confidence            332  357789999999998775 65554

distributions. found a row in 1A13.INFO that was not parsed out

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=89.03  E-value=2  Score=26.06  Aligned_cols=29  Identities=17%  Similarity=0.208  Sum_probs=24.2

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCce
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAE   45 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~   45 (273)
                      .+.|.|.-...+|.+.|+|.|.|..+...
T Consensus        42 ~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~   70 (80)
T cd05885          42 SNTIRFPVDRKDDGAILSCEASHPALVSQ   70 (80)
T ss_pred             EEEEEEEeeeccCCcEEEEEEEChhhCCC
Confidence            34688888888999999999999887653

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=88.80  E-value=2.3  Score=24.39  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=18.1

Q ss_pred             EEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638         115 SATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus       115 ~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      .+...+|.||. |.|.|+|.+..|.
T Consensus        30 ~~~~~~L~~G~-Y~l~V~a~~~~~~   53 (66)
T PF07495_consen   30 SISYTNLPPGK-YTLEVRAKDNNGK   53 (66)
T ss_dssp             EEEEES--SEE-EEEEEEEEETTS-
T ss_pred             EEEEEeCCCEE-EEEEEEEECCCCC
Confidence            78888898885 9999999987763

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=87.90  E-value=2  Score=25.97  Aligned_cols=28  Identities=25%  Similarity=0.255  Sum_probs=21.2

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTA   44 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~   44 (273)
                      .+.|.|.....++.+.|+|.|.|.....
T Consensus        45 ~s~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759          45 VSTLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             EEEEEEeCceecCCCEEEEEEcCccCCC
Confidence            3567787777778889999999865443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology

Probab=87.47  E-value=5.4  Score=25.25  Aligned_cols=83  Identities=14%  Similarity=0.147  Sum_probs=50.8

Q ss_pred             CeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCc----cc
Q psy6638         159 PREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP----YT  234 (273)
Q Consensus       159 p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p----~~  234 (273)
                      |.++...-  .+...+..+|.+.....   .-..|.++|+......... .   .......+......+.....    ..
T Consensus         2 ~~nlsC~~--~~~~~m~CtW~~g~~~~---~~t~y~L~~~~~~~~~~~e-C---~~y~~~~~~~~gC~~~~~~~~~~~~~   72 (99)
T PF09240_consen    2 PQNLSCFI--YNLEYMNCTWEPGKEAP---PDTQYTLYYWYSPLEEEKE-C---PHYSKDSGTRIGCQFPVSEIDSSEFS   72 (99)
T ss_dssp             -EEEEEEE--ETTTEEEEEEECCTTCS---TTEEEEEEEEETTSSSEEE-E---SEEEESTSSEEEEEEESCTT-TTTTS
T ss_pred             CeeCEEEE--ECCEEEEEEECCCCCCC---CcccEEEEEEcCCCCcccc-C---CCccccCCceeEEEecCCCccccccc
Confidence            45777666  67889999999876522   3468999999876432111 1   11111222234555555444    34


Q ss_pred             eEEEEEEEecCCCcCC
Q psy6638         235 KYAIVVRGYNSVGKGP  250 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~  250 (273)
                      .|.|.|.+.+..|.-.
T Consensus        73 ~~~v~V~~ss~~~~i~   88 (99)
T PF09240_consen   73 QYNVCVNGSSSAGSIR   88 (99)
T ss_dssp             EEEEEEEEEETTEEEE
T ss_pred             eEEEEEEeccCCCccC
Confidence            7999999998877653

They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=86.38  E-value=2.4  Score=27.09  Aligned_cols=28  Identities=32%  Similarity=0.215  Sum_probs=23.7

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~   46 (273)
                      .|.|+..++.|.|.|.+...+..|....
T Consensus        72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~   99 (108)
T PF11465_consen   72 ALLIKAAQPQDSGLYCLEVTNESGKVCT   99 (108)
T ss_dssp             EEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred             eEEEeecCcccCceEEEEEEcCCCcEEE
Confidence            7999999999999999999999888754

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=86.13  E-value=5.3  Score=23.77  Aligned_cols=27  Identities=22%  Similarity=0.183  Sum_probs=23.1

Q ss_pred             ccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638         113 QTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus       113 ~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      ...+.|.++.+.....|.+.|.|..|.
T Consensus        37 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~   63 (77)
T cd05760          37 ERTLTLRSAGPDDSGLYYCCAHNAFGS   63 (77)
T ss_pred             CCEEEEeeCCcccCEEEEEEEEeCCCe
Confidence            346788889999999999999998884

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>KOG3515|consensus

Probab=85.57  E-value=8.3  Score=34.19  Aligned_cols=76  Identities=14%  Similarity=0.256  Sum_probs=55.2

Q ss_pred             ecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEE
Q psy6638         118 LQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY  197 (273)
Q Consensus       118 ~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~  197 (273)
                      +-+..++..|.+.|.+.|..|...-+..+.--+    -+..|.++++..  .....+.|.|.+..+   +|....|.+.|
T Consensus       658 ~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t----~~~~~~n~~~~~--~~~~~i~l~~~p~fd---gg~~q~f~~~~  728 (741)
T KOG3515|consen  658 ILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGT----ASVGPINLTYDN--LTYSTISLEWMPGFD---GGLQQRFFLKY  728 (741)
T ss_pred             ccCCcchhhhcceeeecccCCCccccceecCCc----CCCCccceEeee--eeeeeeceeeeeccc---cccccceeeeh
Confidence            344567778888888888888554444333222    234677999888  889999999999987   66777888888


Q ss_pred             EEcCC
Q psy6638         198 QISSG  202 (273)
Q Consensus       198 ~~~~~  202 (273)
                      ...+.
T Consensus       729 ~~~~~  733 (741)
T KOG3515|consen  729 YDLGT  733 (741)
T ss_pred             hhcCC
Confidence            77654

>KOG1948|consensus

Probab=85.38  E-value=28  Score=31.53  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             ccEEEecCCCCCCeEEEEEEEeC
Q psy6638         113 QTSATLQPLLPATQYQVRLLAEN  135 (273)
Q Consensus       113 ~~~~~~~~l~~~~~y~~~v~a~~  135 (273)
                      .-.++|.+|.|++.|.+++.+.-
T Consensus       945 nG~yRiRGL~Pdc~Y~V~vk~~~  967 (1165)
T KOG1948|consen  945 NGTYRIRGLLPDCEYQVHVKSYA  967 (1165)
T ss_pred             CCcEEEeccCCCceEEEEEeecc
Confidence            45699999999999999998874

>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)

Probab=85.25  E-value=4.6  Score=22.27  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=23.5

Q ss_pred             EEEcCCCCccceEEEEEEEecCCCcCCCCccEEEE
Q psy6638         224 ELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIAR  258 (273)
Q Consensus       224 ~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~  258 (273)
                      ++++..+ ....|.+.+.|.+.+|.........|.
T Consensus        15 s~t~~~~-~dG~y~itv~a~D~AGN~s~~~~~~~t   48 (54)
T PF13754_consen   15 SFTVPAL-ADGTYTITVTATDAAGNTSTSSSVTFT   48 (54)
T ss_pred             EEeCCCC-CCccEEEEEEEEeCCCCCCCccceeEE
Confidence            4455555 677999999999999985444333333

>KOG3515|consensus

Probab=84.94  E-value=1.4  Score=38.74  Aligned_cols=76  Identities=13%  Similarity=0.296  Sum_probs=58.0

Q ss_pred             EEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC
Q psy6638          21 GIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE   97 (273)
Q Consensus        21 ~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~   97 (273)
                      -|-+.-....|...|.+.|..|+......+.-...|..|.++.+.......+.|.|.+..++.. ...|.+.+...+
T Consensus       657 ~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t~~~~~~n~~~~~~~~~~i~l~~~p~fdgg~-~q~f~~~~~~~~  732 (741)
T KOG3515|consen  657 WILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGTASVGPINLTYDNLTYSTISLEWMPGFDGGL-QQRFFLKYYDLG  732 (741)
T ss_pred             cccCCcchhhhcceeeecccCCCccccceecCCcCCCCccceEeeeeeeeeeceeeeecccccc-ccceeeehhhcC
Confidence            3344445566679999999999998877777788899999999999999999999998765443 345666665543

>PHA02982 hypothetical protein; Provisional

Probab=84.92  E-value=1.8  Score=31.35  Aligned_cols=75  Identities=16%  Similarity=0.155  Sum_probs=47.4

Q ss_pred             EEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCcc
Q psy6638           6 TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTA   85 (273)
Q Consensus         6 ~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~   85 (273)
                      ....++..++..++|.|+...+.+.|-|+|.+....+....--.              ...+....+.+.|... .....
T Consensus        88 kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~k--------------Cl~V~~~~V~~~W~e~-nNeT~  152 (251)
T PHA02982         88 KDKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEK--------------CLEIQKEDILYVVEEH-NNETI  152 (251)
T ss_pred             ceeEEEEEeccceeEEeccCCcccCCceEEEEecCCCchheehe--------------eeeEecceEEEEEEec-CCeEE
Confidence            34455566888999999999999999999999976654433110              1122345678888742 22223


Q ss_pred             ceEEEEEEEe
Q psy6638          86 ITQYIIQYKS   95 (273)
Q Consensus        86 ~~~y~v~~~~   95 (273)
                      +..|...+..
T Consensus       153 V~CyVgS~~~  162 (251)
T PHA02982        153 ITCFVGSKHG  162 (251)
T ss_pred             EEEEEEeccC
Confidence            4445554443

>KOG1378|consensus

Probab=84.72  E-value=14  Score=30.66  Aligned_cols=35  Identities=26%  Similarity=0.239  Sum_probs=28.5

Q ss_pred             ccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         222 EGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       222 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      ....++.+|++++.|.++|-.-     ..||....|+|++
T Consensus       108 ih~~~~~~L~~~t~YyY~~Gs~-----~~wS~~f~F~t~p  142 (452)
T KOG1378|consen  108 IHDAVMKNLEPNTRYYYQVGSD-----LKWSEIFSFKTPP  142 (452)
T ss_pred             EeeeeecCCCCCceEEEEeCCC-----CCcccceEeECCC
Confidence            4567899999999999988544     2289999999988

>cd00096 Ig Immunoglobulin domain

Probab=84.38  E-value=2.3  Score=23.78  Aligned_cols=27  Identities=44%  Similarity=0.573  Sum_probs=23.1

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYH   41 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~   41 (273)
                      ...+.|.|.++...|.|.|.|.+.+..
T Consensus        40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          40 SGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             eeEEEEEECccCcccCcEEEEEEecCc
Confidence            346689999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B

Probab=84.24  E-value=4.9  Score=33.71  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=20.7

Q ss_pred             ccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         222 EGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       222 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      ...+.+.+|+|++.|.+++.....   +..+..-.|+|.+.
T Consensus        63 t~~v~v~gL~p~t~Y~Y~~~~~~~---~~~s~~g~~rT~p~  100 (453)
T PF09423_consen   63 TVKVDVTGLQPGTRYYYRFVVDGG---GQTSPVGRFRTAPD  100 (453)
T ss_dssp             EEEEEE-S--TT-EEEEEEEE--T---TEE---EEEE--TT
T ss_pred             EeecccCCCCCCceEEEEEEEecC---CCCCCceEEEcCCC
Confidence            356889999999999999999322   34455678888854

>KOG1225|consensus

Probab=83.44  E-value=6.7  Score=33.25  Aligned_cols=114  Identities=19%  Similarity=0.154  Sum_probs=68.9

Q ss_pred             EEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCc
Q psy6638         107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESW  186 (273)
Q Consensus       107 ~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~  186 (273)
                      ...+.....+.+..|.++..|..+++++...-.+.+.. ....+...    -+..+.+..  ....++.+.|..|...  
T Consensus       411 ~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~~~~~~~~----~~g~~~v~~--~~~~s~e~~g~~~s~~--  481 (525)
T KOG1225|consen  411 GRVPGDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKD-KSETTVLC----WNGGLCVDG--ETESSLEVGGPCPSSG--  481 (525)
T ss_pred             eeeccceeeeeeeeecCCcceeeehhhhhhhhccCCcc-cccceEee----cCCceeeee--eeeccccccCCCCCcc--
Confidence            34555667788899999999999998875432222111 11111111    233455555  6788999999998763  


Q ss_pred             cceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEE
Q psy6638         187 NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVV  240 (273)
Q Consensus       187 ~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v  240 (273)
                         ...+.+.+.....+ ..      ....... ....+...+|.|++.|.+.+
T Consensus       482 ---~~~~~~~~~~~~~~-~~------~~~~~~~-~~~~~~~~~l~~c~~~~~~~  524 (525)
T KOG1225|consen  482 ---TCGWEVRCGPCGND-GG------VNAEPPP-ECTSYDRTGLGPCTEYEVSV  524 (525)
T ss_pred             ---ccceEEEeeecCcc-cc------cccCCCC-CCCCCCccCcccccceeccc
Confidence               34677777332221 10      1111122 45788899999999998765

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=83.42  E-value=1.9  Score=27.07  Aligned_cols=26  Identities=19%  Similarity=0.437  Sum_probs=22.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .+....|.|..++++|.|.|+|....
T Consensus        51 ~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          51 GGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CeEEEEEEecCCCcccCEEEEEEEEC
Confidence            34567899999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=83.41  E-value=8.2  Score=23.72  Aligned_cols=35  Identities=14%  Similarity=0.089  Sum_probs=26.2

Q ss_pred             cEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEE
Q psy6638         114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQA  148 (273)
Q Consensus       114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~  148 (273)
                      ..+.|.++.......|.+.|.|..|.......+.+
T Consensus        47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V   81 (88)
T cd05735          47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTV   81 (88)
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEE
Confidence            46788888888889999999999986543333333

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=82.99  E-value=3.7  Score=24.40  Aligned_cols=26  Identities=15%  Similarity=0.050  Sum_probs=22.9

Q ss_pred             EEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638         115 SATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus       115 ~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      .+.|.++.+.....|.+.|.|..|..
T Consensus        42 ~L~I~~v~~~D~G~Y~C~A~N~~G~~   67 (75)
T cd05893          42 CLLIQGATKEDAGWYTVSAKNEAGIV   67 (75)
T ss_pred             EEEECCCCHHHCEEEEEEEEcCCCEE
Confidence            57889999999999999999998844

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>TIGR00868 hCaCC calcium-activated chloride channel protein 1

Probab=82.96  E-value=38  Score=31.08  Aligned_cols=39  Identities=21%  Similarity=0.405  Sum_probs=26.4

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCC--CCccceEEEEEEEeC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYS--GNTAITQYIIQYKSS   96 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~--~~~~~~~y~v~~~~~   96 (273)
                      ....++++. .....+.|+|++|-+  +.+....|.|.+...
T Consensus       757 ~rItDL~~~-~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~  797 (863)
T TIGR00868       757 SKITDLEAG-FQGDNIILTWTAPGDVLDHGRADRYIIRISTS  797 (863)
T ss_pred             ccceeeEEe-ecCCEEEEEeeCCCccCCCCccceEEEEecCC
Confidence            333455443 345569999999864  556778999988653

distributions. found a row in 1A13.INFO that was not parsed out

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=82.82  E-value=18  Score=32.54  Aligned_cols=121  Identities=9%  Similarity=0.045  Sum_probs=60.8

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCcee---EEEEEEecCCCCCc-ceEEEEe-eccEEEEEEeCCCCCCccceEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEM---TIQLLVQETPEAPK-NIRITEE-SSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~---~~~~~~~~~P~~p~-~~~~~~~-~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      ...+.+.++-+ ..|..+++|.|..|-...   +....+.++-.||. .+..... -...+.+.|-.|. ....+..-++
T Consensus       659 ~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it~~~~l~v~dPt-~~~d~~~sei  736 (952)
T COG4733         659 AAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIITLVIRLVVGDPT-GAVDITSTEI  736 (952)
T ss_pred             ccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEEeeeeEEEecCC-cceEEeeeee
Confidence            44688888887 578888888888776543   33444444333222 2222111 1234567776653 2112222222


Q ss_pred             EEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCC
Q psy6638          92 QYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE  141 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~  141 (273)
                      ++....+. ...... .-........-.+|.++..|.|++++++..|...
T Consensus       737 ~~s~~~d~-~~~Ar~-LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~  784 (952)
T COG4733         737 RSAVIADG-NFQARS-LGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNND  784 (952)
T ss_pred             eeeccccc-hhHHhh-hhccccccccccCcCCCceEEEEeeecccccccc
Confidence            22221110 000000 0000111111157999999999999999888543

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=81.58  E-value=10  Score=23.53  Aligned_cols=29  Identities=17%  Similarity=0.157  Sum_probs=24.3

Q ss_pred             CccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638         112 SQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus       112 ~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ....+.|.++.......|.|.|.|..|..
T Consensus        56 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   84 (95)
T cd05730          56 DGSEMTILDVDKLDEAEYTCIAENKAGEQ   84 (95)
T ss_pred             CCCEEEECCCChhhCEEEEEEEEcCCCeE
Confidence            34568889999999999999999998854

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=81.14  E-value=2.8  Score=27.52  Aligned_cols=25  Identities=12%  Similarity=0.153  Sum_probs=21.4

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ...+.|.|.+++++|.|.|.|.+..
T Consensus        73 ~~~~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          73 KSTVYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCEEEEEECCCCHHHCEEEEEEEEc
Confidence            3456899999999999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=80.61  E-value=6  Score=23.52  Aligned_cols=27  Identities=11%  Similarity=0.047  Sum_probs=23.4

Q ss_pred             cEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638         114 TSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus       114 ~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ..+.|.++.......|.+.|.|..|..
T Consensus        41 ~~L~I~~~~~~D~G~Y~C~A~N~~G~~   67 (75)
T cd05892          41 VTLLIKNVNKKDAGWYTVSAVNEAGVA   67 (75)
T ss_pred             EEEEECCCChhhCEEEEEEEEcCcCeE
Confidence            368889999999999999999998843

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>TIGR00864 PCC polycystin cation channel protein

Probab=80.45  E-value=81  Score=33.16  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=19.3

Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEc
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      ..|.+++.|.|..+.-..+..+.++.
T Consensus      1840 G~ytV~L~AsN~vs~~~~s~~~~VQe 1865 (2740)
T TIGR00864      1840 GTFAIRLNASNAVSGKSASREFFAEE 1865 (2740)
T ss_pred             eEEEEEEEEEcccCcceeeeeEEEEE
Confidence            38999999999987665665555553

Note: this model has been restricted to the amino half because for technical reasons.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	273
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		1e-11
1va9_A	122	Solution Structure Of The Second Fniii Domain Of Ds		2e-08
3tes_A	98	Crystal Structure Of Tencon Length = 98		3e-08
1wf5_A	121	Solution Structure Of The First Fn3 Domain Of Sidek		3e-08
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		2e-07
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		2e-07
1uey_A	127	Solution Structure Of The First Fibronectin Type Ii		6e-07
3l5h_A	589	Crystal Structure Of The Full Ectodomain Of Human G		8e-07
2edx_A	134	Solution Structures Of The Fn3 Domain Of Human Rece		2e-06
2yux_A	120	Solution Structure Of 3rd Fibronectin Type Three Do		2e-06
1fnf_A	368	Fragment Of Human Fibronectin Encompassing Type-Iii		4e-06
1x5z_A	115	Solution Structure Of The Fibronectin Type-Iii Doma		1e-05
2dlh_A	121	Solution Structure Of The Second Fn3 Domain Of Huma		4e-05
1mfn_A	184	Solution Nmr Structure Of Linked Cell Attachment Mo		7e-05
3teu_A	98	Crystal Structure Of Fibcon Length = 98		9e-05
1bqu_A	215	Cytokyne-Binding Region Of Gp130 Length = 215		1e-04
3mtr_A	215	Crystal Structure Of The Ig5-Fn1 Tandem Of Human Nc		2e-04
2dju_A	106	Solution Structures Of The Fn3 Domain Of Human Rece		7e-04
1uen_A	125	Solution Structure Of The Third Fibronectin Iii Dom		9e-04

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 25  VLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYS-GN 83
           V R+D+G     A N  G  + T++L V + P+ P+ +++++ S  S+ ++WT P S G 
Sbjct: 168 VERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGG 227
Query: 84  TAITQYIIQY-KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
           + IT YI++   ++ E W    L+ +    +T  T+  L   T YQ R++AEN  G+S+
Sbjct: 228 SKITNYIVEKCATTAERW----LR-VGQARETRYTVINLFGKTSYQFRVIAENKFGLSK 281

>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1 Protein Length = 122

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQIXXXXXXXXXX 209
           T E AP+G P +VT  P  V    + + WKAP +E  NGV+ GY +GY+           
Sbjct: 10  TEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPKKELQNGVIRGYQIGYR--ENSPGSNGQ 65
Query: 210 YTLKSVELDNQYEGEL-RIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
           Y++  VE+    + E+  +  L  + +Y +VV+ +N  G GP S    A T E
Sbjct: 66  YSI--VEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLE 116

>pdb|3TES|A Chain A, Crystal Structure Of Tencon Length = 98

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
           APKN+ ++E +  SL++SWTAP   + A   ++IQY+ SE++   + + + VPGS+ S  
Sbjct: 4   APKNLVVSEVTEDSLRLSWTAP---DAAFDSFMIQYQESEKV--GEAINLTVPGSERSYD 58
Query: 118 LQPLLPATQYQVRL 131
           L  L P T+Y V +
Sbjct: 59  LTGLKPGTEYTVSI 72

>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2 Protein Length = 121

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 49  QLLVQETPEAPKN--IRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLK 106
            L V++ P AP++    ++    R++ ++WT P+ GN+ + +YI++   +   W T  L 
Sbjct: 11  HLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPW-TVLLA 69
Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
            + P + TS T++ L+PA  YQ RL A N +G  +   + +  +L E+
Sbjct: 70  SVDPKA-TSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES 116

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 20  LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP 79
           L IA     D G  +C ATN+ GT      L + + P +P  ++I E S  + ++S+  P
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKP 219
Query: 80  YS-GNTAITQYIIQYKS-SEEMWPTQPLKII-VPGSQTSATLQPLLPATQYQVRLLAENP 136
            S G   I  Y +  K  + E+W     KI+   G QT   L  L P T Y++R+ A N 
Sbjct: 220 DSHGGVPIHHYQVDVKEVASEIW-----KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNG 274
Query: 137 LGMSE 141
            G  +
Sbjct: 275 KGQGD 279

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 20  LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP 79
           L IA     D G  +C ATN+ GT      L + + P +P  ++I E S  + ++S+  P
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKP 219
Query: 80  YS-GNTAITQYIIQYKS-SEEMWPTQPLKII-VPGSQTSATLQPLLPATQYQVRLLAENP 136
            S G   I  Y +  K  + E+W     KI+   G QT   L  L P T Y++R+ A N 
Sbjct: 220 DSHGGVPIHHYQVDVKEVASEIW-----KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNG 274
Query: 137 LGMSE 141
            G  +
Sbjct: 275 KGQGD 279

>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa0343 Protein Length = 127

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 52  VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE---MWPTQPLKII 108
           V + P  P ++ +T++  +S+Q+SWT     N+ IT++II+Y+ +     +W  Q     
Sbjct: 13  VYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQ---TE 69
Query: 109 VPGSQTSATLQPLLPATQYQVRLLAENPLGMS 140
           V G+QT+A L  L P   Y  R++A N +G S
Sbjct: 70  VSGTQTTAQLN-LSPYVNYSFRVMAVNSIGKS 100

>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130: New Insights Into The Molecular Assembly Of Receptor Complexes Length = 589

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 19/153 (12%)
Query: 56  PEAPKNIRI--TEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGS 112
           P  P N+ +  +EE S  L+++WT P   +  I +Y IQY++ +   W   P +     +
Sbjct: 199 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTA-ST 257
Query: 113 QTSATLQPLLPATQY--QVRLLAENPLG-MSETGAELQASTLEEAPNGAPREVTSDPGVV 169
           ++S T+Q L P T+Y  ++R + E+  G  S+   E    T E+ P+ AP    S    +
Sbjct: 258 RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAP----SFWYKI 313
Query: 170 DPTE------LLIKWKA-PPRESWNGVLLGYDV 195
           DP+       + + WK  PP E+ NG +L Y+V
Sbjct: 314 DPSHTQGYRTVQLVWKTLPPFEA-NGKILDYEV 345

>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor- Type Tyrosine-Protein Phosphatase F Length = 134

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +   ++A T +  P+  P++V      +  T + + W  PP +S NGV+  Y V Y
Sbjct: 1   GSSGSSGTIEARTAQSTPSAPPQKVMCV--SMGSTTVRVSWVPPPADSRNGVITQYSVAY 58
Query: 198 QIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
           +                V+  ++      + GL  +T+Y + VR +  VG GP S P + 
Sbjct: 59  EAVDGEDRGRHV-----VDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLV 113
Query: 258 RTNE 261
           RT+E
Sbjct: 114 RTDE 117

>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of Slow Type Myosin-Binding Protein C Length = 120

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 48  IQLLVQETPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEEMWPTQPLK 106
           I + + + P  P+ ++I +    ++ ++WT P   GN AIT Y IQ    + M   +   
Sbjct: 10  IDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSM---EWFT 66
Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
           +I    +TSAT+  L+   +Y  R+ +EN  G+SE     + S +
Sbjct: 67  VIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAV 111

>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii Repeats 7 Through 10 Length = 368

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           ++P  I  ++ ++ S  + W AP +    IT Y I++    E +  +P +  VP S+ S 
Sbjct: 187 DSPTGIDFSDITANSFTVHWIAPRA---TITGYRIRHH--PEHFSGRPREDRVPHSRNSI 241
Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAEL-QASTLEEAPNGAPREVTSDPGVVDPTELL 175
           TL  L P T+Y V ++A N  G  E+   + Q ST+ + P     EV +      PT LL
Sbjct: 242 TLTNLTPGTEYVVSIVALN--GREESPLLIGQQSTVSDVPRDL--EVVA----ATPTSLL 293
Query: 176 IKWKAP 181
           I W AP
Sbjct: 294 ISWDAP 299

>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of Human Protein Tyrosine Phosphatase, Receptor Type, D Isoform 4 Variant Length = 115

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 48  IQLLVQE-TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLK 106
           IQ++ Q   P  P N +   ES  S+ +SWT P S    I  Y + YK  E     +   
Sbjct: 9   IQVITQTGVPGQPLNFKAEPESETSILLSWTPPRS--DTIANYELVYKDGEHG--EEQRI 64
Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
            I PG  TS  LQ L P + Y  RL A +P G+  + AE+ A T++ +
Sbjct: 65  TIEPG--TSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSS 110

>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human Receptor-Type Tyrosine-Protein Phosphatase Delta Length = 121

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +   +   T E+AP+ APR+V +   ++  T +L++WK P  E  NG + GY V Y
Sbjct: 1   GSSGSSGPVLTQTSEQAPSSAPRDVQAR--MLSSTTILVQWKEP--EEPNGQIQGYRVYY 56
Query: 198 QIXXXXXXXXXXYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
            +            +K    D+Q      I  L P   Y++ V  + S+G GP S     
Sbjct: 57  TMDPTQHVNNW---MKHNVADSQI---TTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQV 110
Query: 258 RTNEG 262
            T  G
Sbjct: 111 ITQTG 115

>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules Of Mouse Fibronectin Containing The Rgd And Synergy Regions, 20 Structures Length = 184

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           ++P     ++ ++ S  + W AP +    IT YII++ +   +   +P +  VP S+ S 
Sbjct: 3   DSPTGFDSSDITANSFTVHWVAPRA---PITGYIIRHHAEHSVG--RPRQDRVPPSRNSI 57
Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAEL-QASTLEEAPNGAPREVTSDPGVVDPTELL 175
           TL  L P T+Y V ++A N  G  E+   + Q +T+ + P     EV +      PT LL
Sbjct: 58  TLTNLNPGTEYVVSIIAVN--GREESPPLIGQQATVSDIPRDL--EVIAS----TPTSLL 109
Query: 176 IKWKAP 181
           I W+ P
Sbjct: 110 ISWEPP 115

>pdb|3TEU|A Chain A, Crystal Structure Of Fibcon Length = 98

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           +AP ++++T  +  S+ +SWT P   +  IT Y I Y  S    P +P ++ VP S TS 
Sbjct: 3   DAPTDLQVTNVTDTSITVSWTPP---SATITGYRITYTPSNG--PGEPKELTVPPSSTSV 57
Query: 117 TLQPLLPATQYQVRLLA 133
           T+  L P  +Y V + A
Sbjct: 58  TITGLTPGVEYVVSVYA 74

>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130 Length = 215

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 56  PEAPKNIRI--TEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGS 112
           P  P N+ +  +EE S  L+++WT P   +  I +Y IQY++ +   W   P +     +
Sbjct: 104 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTA-ST 162
Query: 113 QTSATLQPLLPATQY--QVRLLAENPLG-MSETGAELQASTLEEAPNGAP 159
           ++S T+Q L P T+Y  ++R + E+  G  S+   E    T E+ P+  P
Sbjct: 163 RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 212

>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam Length = 215

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 27  RQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTA 85
             D G  +C A N  G   +   L+  +TP +P +I   E  S + Q+ +  P  +G   
Sbjct: 85  ENDFGNYNCTAVNRIGQESLEFILVQADTPSSP-SIDQVEPYSSTAQVQFDEPEATGGVP 143
Query: 86  ITQYIIQYKS-SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGA 144
           I +Y  ++++  EE+W ++         +   T+  L P T Y VRL A N  G+ E  A
Sbjct: 144 ILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA 203
Query: 145 ELQAST 150
             +  T
Sbjct: 204 ASEFKT 209

>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor- Type Tyrosine-Protein Phosphatase F Length = 106

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNT-AITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
           P+ P ++ +TE ++ S+ ++W    SGN+  +T Y IQY+++    P Q +  +   + T
Sbjct: 8   PKPPIDLVVTETTATSVTLTWD---SGNSEPVTYYGIQYRAAGTEGPFQEVDGV---ATT 61
Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
             ++  L P ++Y  R+LA N +G       ++A T E++
Sbjct: 62  RYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQS 101

>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of Human Kiaa0343 Protein Length = 125

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 152 EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQIXXXXXXXXXXYT 211
           E+ P  AP  V  +  VV+ T   + W   P +S  G L GY + Y            + 
Sbjct: 11  EDLPMVAPGNVRVN--VVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHI 68
Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
            K +      +    +PGL P++ Y + VR  N  G+GP S   +  T EG
Sbjct: 69  EKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEG 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-56
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-20
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	1e-54
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-50
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-35
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-29
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-05
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	1e-45
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-17
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	9e-43
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	4e-42
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	2e-16
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	2e-05
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	4e-41
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	5e-18
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	3e-17
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-40
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-28
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	6e-26
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	2e-38
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	5e-22
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	7e-20
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	2e-07
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	3e-38
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	3e-09
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	2e-37
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	1e-15
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	2e-13
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-36
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-18
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-34
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-11
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	1e-33
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	1e-27
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	2e-10
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	3e-32
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	6e-31
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	3e-30
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	4e-32
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	5e-29
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	7e-29
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	8e-32
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	2e-27
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	3e-09
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	1e-30
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	3e-16
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	1e-06
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	5e-30
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	5e-30
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	2e-23
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	1e-14
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	8e-30
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	2e-29
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	5e-15
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	4e-29
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	3e-04
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	2e-28
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	2e-18
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	3e-28
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	8e-14
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	6e-28
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	1e-12
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	1e-27
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	4e-14
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	1e-27
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	1e-16
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	2e-27
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	2e-12
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	3e-27
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	8e-15
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	3e-26
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	3e-18
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	4e-26
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	2e-05
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	7e-26
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	3e-14
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	7e-05
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	2e-25
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	2e-15
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	5e-08
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	2e-25
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	4e-10
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	6e-25
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	6e-09
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	1e-24
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	8e-04
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	3e-24
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	2e-18
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	3e-24
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	6e-15
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	1e-23
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	3e-23
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	3e-15
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	4e-23
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	1e-16
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-23
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-09
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	9e-23
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	9e-16
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	2e-22
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	4e-06
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	5e-22
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	3e-04
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	5e-22
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	1e-13
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	8e-22
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	6e-20
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	3e-21
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	2e-18
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	3e-18
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	3e-11
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	3e-08
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	1e-20
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	4e-08
2crm_A	120	Fibronectin type-III domain containing protein 3A;	2e-20
2crm_A	120	Fibronectin type-III domain containing protein 3A;	1e-07
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	3e-20
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	1e-10
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	4e-20
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	4e-20
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	3e-05
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	6e-20
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	7e-07
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	7e-20
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	5e-19
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	1e-19
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	1e-19
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	2e-18
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	2e-19
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	1e-05
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	2e-19
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	2e-05
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	3e-19
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	7e-07
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	6e-19
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	8e-08
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	6e-19
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	7e-07
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	8e-19
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	2e-16
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	2e-18
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	1e-05
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	2e-18
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	3e-17
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	3e-18
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	2e-06
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	3e-18
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	1e-05
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	3e-18
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	2e-04
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	5e-18
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	1e-12
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	5e-18
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	9e-07
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	5e-18
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	5e-18
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	2e-17
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	5e-18
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	6e-05
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	6e-18
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	6e-16
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	7e-18
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	8e-18
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	5e-15
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	9e-18
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	9e-16
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	1e-17
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	1e-16
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	1e-17
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	2e-08
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	1e-17
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	1e-17
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	1e-16
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	2e-17
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	3e-05
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	3e-17
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	2e-05
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	3e-17
2crz_A	110	Fibronectin type-III domain containing protein 3A;	6e-17
2crz_A	110	Fibronectin type-III domain containing protein 3A;	2e-06
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	7e-17
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	8e-17
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	5e-09
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	9e-17
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	4e-07
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	1e-16
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	2e-04
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	1e-16
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	4e-16
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	5e-16
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	2e-04
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	6e-16
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	8e-13
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	8e-16
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	2e-09
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	8e-16
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	4e-12
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	3e-15
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	8e-08
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	4e-15
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	6e-06
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	6e-15
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	9e-14
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	9e-15
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	2e-14
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-14
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	3e-14
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	5e-14
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	2e-05
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	6e-14
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	6e-14
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	2e-04
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	8e-14
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	1e-13
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	2e-13
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	4e-07
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	1e-05
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	3e-13
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	8e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-10
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-07
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-06
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	1e-11
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	3e-11
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	2e-09
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	2e-07
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	3e-11
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	1e-05
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-11
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	4e-11
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	4e-10
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	4e-11
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	1e-08
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	3e-07
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	6e-11
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-10
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-06
3tgx_A	219	Interleukin-21 receptor; class I cytokine, class I	2e-10
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	5e-10
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	3e-06
2erj_C	247	Cytokine receptor common gamma chain; immune syste	5e-10
2erj_C	247	Cytokine receptor common gamma chain; immune syste	8e-08
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-10
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-09
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	8e-08
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-09
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-07
3dlq_R	211	Interleukin-22 receptor subunit alpha-1; cytokine-	1e-09
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-09
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	5e-09
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	3e-05
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	5e-09
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	1e-06
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-08
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	1e-08
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-06
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	1e-08
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-08
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-06
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-08
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	5e-08
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	5e-08
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	5e-08
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	6e-08
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	3e-05
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	6e-04
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-08
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	7e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-07
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-07
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-06
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	9e-06
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-04
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-07
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-07
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	2e-07
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-07
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-04
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-07
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	4e-07
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-07
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	5e-07
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-07
2csp_A	130	RIM-BP2, RIM binding protein 2; FN3 domain, struct	6e-07
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	7e-07
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	7e-07
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	8e-07
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	9e-04
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	8e-07
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	9e-07
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-06
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-06
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-05
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-06
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-06
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-06
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-06
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-04
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-06
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-06
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-05
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-04
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-05
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-06
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-06
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-06
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-06
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-04
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-06
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-05
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-06
2dle_A	104	Receptor-type tyrosine-protein phosphatase ETA; pr	4e-06
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-06
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-05
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-06
1oww_A	98	FN, fibronectin first type III module, CIG; fibron	5e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	6e-06
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	6e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	7e-06
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-06
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-05
1y6k_R	214	Interleukin-10 receptor alpha chain; helix bundle,	8e-06
1he7_A	126	High affinity nerve growth factor receptor; transf	9e-06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-05
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-05
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-05
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-05
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-05
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-05
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	8e-04
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-05
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-05
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-05
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-05
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-04
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-05
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-05
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-05
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-04
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-04
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-05
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-05
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-05
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-04
3cxe_C	120	Granulocyte-macrophage colony-stimulating factor s	4e-05
3cxe_C	120	Granulocyte-macrophage colony-stimulating factor s	9e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-04
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-04
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	1e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-04
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-04
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-04
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-04
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	2e-04
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-04
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	3e-04
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-04
1fyh_B	229	Interferon-gamma receptor alpha chain; cytokine-re	3e-04
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-04
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	5e-04
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-04
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	6e-04
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	7e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	7e-04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	8e-04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	8e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	9e-04

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  185 bits (470), Expect = 2e-56
 Identities = 49/258 (18%), Positives = 85/258 (32%), Gaps = 16/258 (6%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
           ++ T   +    G    L IA     D G  +C ATN+ GT      L + + P +P  +
Sbjct: 143 AKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGV 202

Query: 63  RITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
           +I E S  + ++S+  P   G   I  Y +  K   E+       +   G QT   L  L
Sbjct: 203 KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVK---EVASEIWKIVRSHGVQTMVVLNNL 259

Query: 122 LPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP 181
            P T Y++R+ A N  G  +        TL       P                +     
Sbjct: 260 EPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQP---SSGKSFKLSIT-- 314

Query: 182 PRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVR 241
            ++     +L Y V Y+                 ++    +  + +  L     Y + + 
Sbjct: 315 KQDDGGAPILEYIVKYRSKDKED------QWLEKKVQGN-KDHIILEHLQWTMGYEVQIT 367

Query: 242 GYNSVGKGPFSEPFIART 259
             N +G    +    +  
Sbjct: 368 AANRLGYSEPTVYEFSMP 385

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 86.8 bits (215), Expect = 9e-20
 Identities = 44/264 (16%), Positives = 82/264 (31%), Gaps = 32/264 (12%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRI 64
           R +V      S L I +V   DSG   C A +  G  + ++ L ++  P           
Sbjct: 53  RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYS 112

Query: 65  TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPA 124
            E +  ++          N   +  I   +    +       +    +     L+ + P 
Sbjct: 113 WEGNPINISC----DVKSNPPAS--IHWRRDKLVLPAKNTTNLKTYSTGRKMILE-IAPT 165

Query: 125 T-----QYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWK 179
           +     +Y     A N +G       L    L + P  +P  V      +  T   + + 
Sbjct: 166 SDNDFGRYNCT--ATNHIGTRFQEYIL---ALADVP-SSPYGVKIIE--LSQTTAKVSFN 217

Query: 180 APPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIV 239
             P       +  Y V  +  +             +   +  +  + +  L P T Y I 
Sbjct: 218 -KPDSHGGVPIHHYQVDVKEVASEI--------WKIVRSHGVQTMVVLNNLEPNTTYEIR 268

Query: 240 VRGYNSVGKGPFSEPFIARTNEGD 263
           V   N  G+G +S+  I +T    
Sbjct: 269 VAAVNGKGQGDYSKIEIFQTLPVR 292

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score =  174 bits (443), Expect = 1e-54
 Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 12/213 (5%)

Query: 51  LVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVP 110
           +VQ+ P APK   IT   +   +I W       + I  Y IQ+ +S            VP
Sbjct: 1   IVQDVPNAPKLTGITC-QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59

Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLGMSE-TGAELQASTLEEAPNGAPREVTSDPGVV 169
            +  S+ +  + P   Y  R++A N +G S  +      +T  + P   P  V       
Sbjct: 60  NT-DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQG--T 116

Query: 170 DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG 229
           +P  L+I W   P    N     Y V ++    ++        ++  + +  +  + I  
Sbjct: 117 EPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAA------AWENNNIFDWRQNNIVIAD 170

Query: 230 LTPYTKYAIVVRGYNSVGKGPFS-EPFIARTNE 261
              + KY I V   N  G+   + E  +  + E
Sbjct: 171 QPTFVKYLIKVVAINDRGESNVAAEEVVGYSGE 203

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  175 bits (445), Expect = 2e-50
 Identities = 50/263 (19%), Positives = 91/263 (34%), Gaps = 15/263 (5%)

Query: 4   RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQETPEAPKNI 62
                +       I+   + N  ++D+G   C+     G       +L+V+E P      
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPP 268

Query: 63  RITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
           ++    +  L I   A   +G+  I    ++Y ++   W         P   TS  +  L
Sbjct: 269 QLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSW-----NDRQPVDSTSYKIGHL 323

Query: 122 LPATQYQVRLLAENP--LGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWK 179
            P T+Y++ +L   P   G    G  L+  T    P   PR++      V   ++ I+W+
Sbjct: 324 DPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLE--VVEVKSRQITIRWE 381

Query: 180 APPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIV 239
                          V Y    G          +          +  I  L+PYT  ++ 
Sbjct: 382 PFGYNVTRCHSYNLTVHYCYQVGGQ---EQVREEVSWDTENSHPQHTITNLSPYTNVSVK 438

Query: 240 VRGYNSVGKGPFSEPFIARTNEG 262
           +   N  G+   S+  I +T+E 
Sbjct: 439 LILMNPEGRKE-SQELIVQTDED 460

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  132 bits (334), Expect = 3e-35
 Identities = 50/241 (20%), Positives = 80/241 (33%), Gaps = 16/241 (6%)

Query: 32  TLSCLATNYH--GTAEMTIQLLVQETPE----APKNIRITEESSRSLQISWTAPYS--GN 83
            +S L T     GT      L  +         P+ + + E  SR + I W         
Sbjct: 330 EISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTR 389

Query: 84  TAITQYIIQYK--SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
                  + Y      +    + +      S    T+  L P T   V+L+  NP G  E
Sbjct: 390 CHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE 449

Query: 142 TGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISS 201
           +  EL   T E+ P   P E     G     ++ ++W+ P +    GV+  Y++ Y+  S
Sbjct: 450 S-QELIVQTDEDLPGAVPTESIQ--GSTFEEKIFLQWREPTQT--YGVITLYEITYKAVS 504

Query: 202 GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
                +              E      GL P T Y+  +R   + G GP +      T  
Sbjct: 505 SFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATN-QFTTKI 563

Query: 262 G 262
            
Sbjct: 564 S 564

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  116 bits (290), Expect = 2e-29
 Identities = 39/246 (15%), Positives = 60/246 (24%), Gaps = 43/246 (17%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPL-----KIIVP 110
              P            + + W  P      IT Y I YK+     P   L     ++   
Sbjct: 463 GAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKL 522

Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVD 170
           G++T      L P T Y   + A    G     A  Q +T   AP   P      P    
Sbjct: 523 GNETHFLFFGLYPGTTYSFTIRASTAKGFGPP-ATNQFTTKISAP-SMPAYELETPLNQT 580

Query: 171 PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL------------- 217
              + +  K     S    +  Y +  +         ++  LK   +             
Sbjct: 581 DNTVTVMLKPA--HSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQ 638

Query: 218 ---------------------DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFI 256
                                DN+         L PY  Y I  +  +        +   
Sbjct: 639 YYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQ 698

Query: 257 ARTNEG 262
             T   
Sbjct: 699 VATKGA 704

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 44.0 bits (103), Expect = 4e-05
 Identities = 19/148 (12%), Positives = 35/148 (23%), Gaps = 41/148 (27%)

Query: 53  QETPEAPKNIRITEE--SSRSLQISWTAPYSGNTAITQYIIQYK----SSEEMWPTQPLK 106
              P  P     T    +  ++ +     +S    ++ Y I  +       +        
Sbjct: 563 ISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKC 622

Query: 107 IIVPGSQTSATLQ-----------------------------------PLLPATQYQVRL 131
             VP    +A+L                                    PLLP   Y++  
Sbjct: 623 YPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYF 682

Query: 132 LAENPLGMSETGAELQASTLEEAPNGAP 159
            A +          +Q +T   A     
Sbjct: 683 QAASRANGETKIDCVQVATKGAATPKPV 710

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score =  151 bits (384), Expect = 1e-45
 Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 14/213 (6%)

Query: 56  PEAPKNIRITEESSRSLQISWTAP----YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
              P  ++ +  S  +++I+W       +   T    Y +++K++               
Sbjct: 5   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKY---KNANA 61

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP 171
           +  S  +  L P T Y+  ++       S        +T E  P   P++VT       P
Sbjct: 62  TTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKP 121

Query: 172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT 231
             +++ W+ P     NG + GY + Y     +   +  + ++ V  +       +I  LT
Sbjct: 122 KTIIVNWQPPSE--ANGKITGYIIYYSTDVNAE--IHDWVIEPVVGNRL---THQIQELT 174

Query: 232 PYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDF 264
             T Y   ++  NS G GP SE    RT +   
Sbjct: 175 LDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHH 207

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 23/103 (22%), Positives = 41/103 (39%)

Query: 54  ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
            +P     +   E   +++ ++W  P   N  IT YII Y +         +   V G++
Sbjct: 106 TSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNR 165

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN 156
            +  +Q L   T Y  ++ A N  GM      +Q  T +   +
Sbjct: 166 LTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHH 208

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score =  144 bits (365), Expect = 9e-43
 Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 23/219 (10%)

Query: 55  TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS----------SEEMWPTQP 104
           +   P    +T  S  S+ + W  P +    I  + +QY+           ++ +   +P
Sbjct: 1   STYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60

Query: 105 LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE----TGAELQASTLEEAPNGAPR 160
                 G   +A++  L P   Y+ R+LA      ++    +            P   P 
Sbjct: 61  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120

Query: 161 EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQ 220
            +  +      T +++ W     ++   ++ GY   Y+ SS +      Y   ++E  + 
Sbjct: 121 LLEIEE--YSETAVVLHWS-LASDADEHLITGYYAYYRPSSSA----GEYFKATIEGAH- 172

Query: 221 YEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
                +I  L   T Y   ++ +++     FS     RT
Sbjct: 173 -ARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT 210

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  142 bits (359), Expect = 4e-42
 Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 17/202 (8%)

Query: 54  ETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
           +TP  P+++++ E +  S+ ++W  P   G + I  YI++ + S     +    +     
Sbjct: 4   DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYS---TVATNCH 60

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT 172
           +TS  +  L     Y  R+LAEN  G+       ++    E P   P ++T     V   
Sbjct: 61  KTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERP-LPPGKITLMD--VTRN 117

Query: 173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP 232
            + + W+  P       +LGY V  Q           +   +     +      I GL  
Sbjct: 118 SVSLSWE-KPEHDGGSRILGYIVEMQTKGS-----DKWATCATVKVTEA----TITGLIQ 167

Query: 233 YTKYAIVVRGYNSVGKGPFSEP 254
             +Y+  V   N  G     + 
Sbjct: 168 GEEYSFRVSAQNEKGISDPRQL 189

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 37  ATNYHGT---AEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQ 92
           A N +G    AE    +   E P  P  I + + +  S+ +SW  P + G + I  YI++
Sbjct: 81  AENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVE 140

Query: 93  YKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE 152
            ++                  T AT+  L+   +Y  R+ A+N  G+S+          +
Sbjct: 141 MQTKGSDKWAT----CATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196

Query: 153 E 153
           +
Sbjct: 197 D 197

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 11/103 (10%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
           G P+++      V  T + + W  PP       +  Y V  + S+  + +  +       
Sbjct: 7   GPPQDLKVKE--VTKTSVTLTWD-PPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
                    ++  L     Y   V   N  G G  +E   +  
Sbjct: 64  W--------KVDQLQEGCSYYFRVLAENEYGIGLPAETAESVK 98

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score =  140 bits (355), Expect = 4e-41
 Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 13/204 (6%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
             AP+N       SR +  +W  P   +     Y ++Y    +         ++     S
Sbjct: 6   LGAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYWIQGDSESEA---HLLDSKVPS 59

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELL 175
             L  L P   Y++++ A    G     + +   T +E P   P  +  +   V  T   
Sbjct: 60  VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVP-SEPGRLAFNV--VSSTVTQ 116

Query: 176 IKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK 235
           + W  P     NG +  Y+V Y + +  +  +    +K V +DN     L I  L     
Sbjct: 117 LSWAEPAET--NGEITAYEVCYGLVNDDNRPIG--PMKKVLVDNPKNRMLLIENLRESQP 172

Query: 236 YAIVVRGYNSVGKGPFSEPFIART 259
           Y   V+  N  G GP  E  I   
Sbjct: 173 YRYTVKARNGAGWGPEREAIINLA 196

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 79.8 bits (197), Expect = 5e-18
 Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 7/137 (5%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK---SSEEMWPTQPLKIIV 109
           QE P  P  +     SS   Q+SW  P   N  IT Y + Y                ++ 
Sbjct: 96  QEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD 155

Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSE-TGAELQASTLEEAPNGAPREVTSDPGV 168
                   ++ L  +  Y+  + A N  G      A +  +T  + P   P         
Sbjct: 156 NPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVD 215

Query: 169 VDPTEL---LIKWKAPP 182
               E     + +    
Sbjct: 216 AQSGEDYDSFLMYSDDV 232

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 77.5 bits (191), Expect = 3e-17
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 15/111 (13%)

Query: 152 EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYT 211
                GAP+   +        ++   W  P     +G  +GY V Y I   S        
Sbjct: 2   SHMDLGAPQNPNA--KAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLD 54

Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
            K           + +  L PY  Y + V  Y + G+GP+S     RT++ 
Sbjct: 55  SK--------VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQE 97

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  146 bits (369), Expect = 2e-40
 Identities = 52/241 (21%), Positives = 90/241 (37%), Gaps = 23/241 (9%)

Query: 26  LRQDSGTLSCLATNYHGTAE---MTIQLLVQETPEAPKNIRI--TEESSRSLQISWTAPY 80
           +   +  +   A N  G      +    + +  P  P N+ +  +EE S  L+++WT P 
Sbjct: 166 VYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPS 225

Query: 81  SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG-- 138
             +  I +Y IQY++ +    +Q        +++S T+Q L P T+Y  R+      G  
Sbjct: 226 IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKG 285

Query: 139 -MSETGAELQASTLEEAPNGAPREVTSDPGVV--DPTELLIKWKAPPRESWNGVLLGYDV 195
             S+   E    T E+ P+ AP                + + WK  P    NG +L Y+V
Sbjct: 286 YWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEV 345

Query: 196 GYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF 255
                        +YT+ + +L                 +Y   +   N VGK   +   
Sbjct: 346 TLTRWKSHL---QNYTVNATKLT----------VNLTNDRYLATLTVRNLVGKSDAAVLT 392

Query: 256 I 256
           I
Sbjct: 393 I 393

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  113 bits (284), Expect = 1e-28
 Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 16/241 (6%)

Query: 26  LRQDSGTLSCLATNYHGTAEM--TIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGN 83
           +   +  L+C    +    +    I ++    PE PKN+       + ++  W      +
Sbjct: 71  IASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETH 130

Query: 84  TAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETG 143
              T + ++ + +   +     K       +       +     +V + AEN LG   + 
Sbjct: 131 L-ETNFTLKSEWATHKFADCKAK--RDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS- 186

Query: 144 AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGS 203
             +    + +     P  ++        + L + W  P     + ++L Y++ Y+     
Sbjct: 187 DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP--SIKSVIILKYNIQYRTKDA- 243

Query: 204 SLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP---FIARTN 260
               S+++    E          +  L P+T+Y   +R     GKG +S+        T 
Sbjct: 244 ----STWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 299

Query: 261 E 261
           E
Sbjct: 300 E 300

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  105 bits (264), Expect = 6e-26
 Identities = 38/238 (15%), Positives = 76/238 (31%), Gaps = 21/238 (8%)

Query: 26  LRQDSGTLSCLATNYHGT---AEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSG 82
           L  D    +    N  G    A +TI     +      +++        L + WT P   
Sbjct: 368 LTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFP-KDNMLWVEWTTP--- 423

Query: 83  NTAITQYIIQYK-SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
             ++ +YI+++   S++       +        +     L  +  Y + +      G   
Sbjct: 424 RESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGS 483

Query: 142 TGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISS 201
               ++A   +  P      V +    V   E +++W   P +  NG +  Y + Y+   
Sbjct: 484 P-ESIKAYLKQAPP-SKGPTVRTKK--VGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII 539

Query: 202 GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
           G+    ++  + S         E  +  LT  T Y + +  Y   G     E      
Sbjct: 540 GNE---TAVNVDSSHT------EYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTP 588

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  141 bits (356), Expect = 2e-38
 Identities = 42/240 (17%), Positives = 89/240 (37%), Gaps = 12/240 (5%)

Query: 27  RQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAI 86
            + SG   C +     T ++   L      +  K +R TE  S  L++ W++ ++ +   
Sbjct: 132 NECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEP 191

Query: 87  TQYIIQYKSSEEMWPTQPL----KIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSET 142
             Y++Q + +  + P++      + +   +     L  + P+  YQ R+ A N  G    
Sbjct: 192 VIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGF 251

Query: 143 GAELQASTLEEAPN--GAPREVT---SDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
            A  +     + P+   AP  +    S         + I W  P  E  +  +  Y V +
Sbjct: 252 TAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLP--EEPDIPVHHYKVFW 309

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
                SS +L     K  +  + ++  + +  L P   Y + ++     G+       ++
Sbjct: 310 S-WMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVS 368

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 94.3 bits (233), Expect = 5e-22
 Identities = 41/262 (15%), Positives = 69/262 (26%), Gaps = 34/262 (12%)

Query: 37  ATNYHGTAEMTIQLLVQETPEAPK-----------NIRITEESSRSLQISWTAPYSGNTA 85
           A N HGT   T       + + P            N  +  + S ++ I W  P   +  
Sbjct: 242 AVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIP 301

Query: 86  ITQYIIQYKSSEEMWPTQPLK----IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
           +  Y + +          P K        G Q S  L+ L P   Y V L A    G + 
Sbjct: 302 VHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTR 361

Query: 142 TGAELQA--STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP----------------R 183
             +   +   T   A N   + V +  G +       + +                   +
Sbjct: 362 LKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVK 421

Query: 184 ESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQ-YEGELRIPGLTPYTKYAIVVRG 242
             W          Y +         + T  S       +E  + +  L+   KY + V+ 
Sbjct: 422 VYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQP 481

Query: 243 YNSVGKGPFSEPFIARTNEGDF 264
                       F         
Sbjct: 482 IRPKSHSKAEAVFFTTPPCSAL 503

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 88.1 bits (217), Expect = 7e-20
 Identities = 38/234 (16%), Positives = 72/234 (30%), Gaps = 28/234 (11%)

Query: 55  TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK--SSEEMWPTQPLKIIVPGS 112
            P  P  +         LQ+      + +  + +Y +++   +      T          
Sbjct: 401 RPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTH 460

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNG--------------- 157
           +    LQ L  + +Y+V +    P   S+  A    +    A  G               
Sbjct: 461 ENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHV 520

Query: 158 ------APREVTSDPGVVD-PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS- 209
                  P  +++   V D        WK   + +    + G+ V +   +  S   S  
Sbjct: 521 LSKVLAKPENLSASFIVQDVNITGHFSWK-MAKANLYQPMTGFQVTWAEVTTESRQNSLP 579

Query: 210 -YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
              +   ++       L +P L P T Y + V+     G+GP +     RT E 
Sbjct: 580 NSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTF-RTPEL 632

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 51.1 bits (121), Expect = 2e-07
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 149 STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS 208
           +  +  P    +E+      +   +L +KW +    S   V   Y V  + + G   +  
Sbjct: 154 TLYKGVPLKPRKELRFT--ELQSGQLEVKWSSKFNISIEPV--IYVVQRRWNYGIHPSED 209

Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGD 263
             T     +    +  +++  + P   Y   V   N  G   F+ P     +  D
Sbjct: 210 DAT-HWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKD 263

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score =  132 bits (334), Expect = 3e-38
 Identities = 41/211 (19%), Positives = 69/211 (32%), Gaps = 15/211 (7%)

Query: 49  QLLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYK-SSEEMWPTQPLK 106
            L   +TP +P      E  S + Q+ +  P  +G   I +Y  +++   EE+W ++   
Sbjct: 2   PLAQADTPSSPSID-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 60

Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP 166
                 +   T+  L P T Y VRL A N  G+ E  A  +  T       AP+      
Sbjct: 61  AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMG 120

Query: 167 GVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR 226
              D   + +       +     +  Y V Y+  S                       + 
Sbjct: 121 --EDGNSIKVNLIKQ--DDGGSPIRHYLVRYRALSSEWKPEIRLPSG--------SDHVM 168

Query: 227 IPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
           +  L    +Y + V   N  GK   +     
Sbjct: 169 LKSLDWNAEYEVYVVAENQQGKSKAAHFVFR 199

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGV-LLGYDVGYQISSGSSLALS 208
              + P  +P     +P     +   +++  P  E+  GV +L Y   ++          
Sbjct: 4   AQADTP-SSPSIDQVEPY---SSTAQVQFDEP--EATGGVPILKYKAEWRAVGEEVWHSK 57

Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
            Y  K   ++        I GL P T YA+ +   N  G G  S     +T  
Sbjct: 58  WYDAKEASMEGIVT----IVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 106

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score =  137 bits (347), Expect = 2e-37
 Identities = 47/250 (18%), Positives = 82/250 (32%), Gaps = 23/250 (9%)

Query: 19  ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTA 78
                + L    G  SC        A      +    P +  +          +++ WT 
Sbjct: 296 LECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTP 355

Query: 79  P-YSGNTAITQYIIQYK-SSEEMWPTQPLKIIV-------PGSQTSATLQPLLPATQYQV 129
           P  SG      Y +  +    E     P +  V         ++TS T+  L P   Y  
Sbjct: 356 PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTF 415

Query: 130 RLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGV 189
            + A N +    T    + +++       P +V  +      T L + W  PP +     
Sbjct: 416 TVEARNGVSGLVTSRSFRTASVSINQ-TEPPKVRLEG--RSTTSLSVSWSIPPPQ--QSR 470

Query: 190 LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG 249
           +  Y+V Y+    S+    SY ++  E          +  L P T Y + V+     G+G
Sbjct: 471 VWKYEVTYRKKGDSN----SYNVRRTE-GFSVT----LDDLAPDTTYLVQVQALTQEGQG 521

Query: 250 PFSEPFIART 259
             S+    +T
Sbjct: 522 AGSKVHEFQT 531

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 75.6 bits (185), Expect = 1e-15
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 32  TLSCLATNYHGTAEMTIQLLV---QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQ 88
           T +  A N       +              P  +R+   S+ SL +SW+ P    + + +
Sbjct: 414 TFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWK 473

Query: 89  YIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQA 148
           Y + Y+   +         +      S TL  L P T Y V++ A    G        + 
Sbjct: 474 YEVTYRKKGDSNSYN----VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEF 529

Query: 149 STLEE 153
            TL  
Sbjct: 530 QTLSP 534

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 68.7 bits (167), Expect = 2e-13
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 7/118 (5%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQ---ISSGSS 204
           AS     P  AP  +T+   V    ++ ++W  PP++S     + Y V  +     SG  
Sbjct: 326 ASMPCTRPPSAPHYLTA---VGMGAKVELRWT-PPQDSGGREDIVYSVTCEQCWPESGEC 381

Query: 205 LALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
               +    S          + +  L P+  Y   V   N V     S  F   +   
Sbjct: 382 GPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSI 439

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  129 bits (326), Expect = 5e-36
 Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 7/154 (4%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEE 67
            + ++     S +    V R+D+G     A N  G  + T++L V + P+ P+ +++++ 
Sbjct: 151 YQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDV 210

Query: 68  SSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEMWPTQPLKIIVPGSQTSATLQPLLPAT 125
           S  S+ ++WT P   G + IT YI++  + + E W       +    +T  T+  L   T
Sbjct: 211 SRDSVNLTWTEPASDGGSKITNYIVEKCATTAERW-----LRVGQARETRYTVINLFGKT 265

Query: 126 QYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
            YQ R++AEN  G+S+     + +  +E    A 
Sbjct: 266 SYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAM 299

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 81.0 bits (200), Expect = 5e-18
 Identities = 55/266 (20%), Positives = 85/266 (31%), Gaps = 44/266 (16%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP------ 56
            +Y I+E     G   +L IA+V   D+      ATN  G+   T  L V+         
Sbjct: 50  LKYRIQEF---KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPK 106

Query: 57  --EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
             E    +           +S   P+SG       I   K  + +      ++IV  S T
Sbjct: 107 TLEGMGAVHALRGEV----VSIKIPFSGKPDPV--ITWQKGQDLIDNNGHYQVIVTRSFT 160

Query: 115 SATLQPLLPAT---QYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP 171
           S      +       Y V   A+N  G+ +   EL    + + P   PR       V D 
Sbjct: 161 SLVFPNGVERKDAGFYVVC--AKNRFGIDQKTVEL---DVADVP-DPPR----GVKVSDV 210

Query: 172 TE--LLIKWKAPPRESWNGVLLGYDVGY-QISSGSSLALSSYTLKSVELDNQYEGELRIP 228
           +   + + W   P       +  Y V     ++   L +          + +Y     + 
Sbjct: 211 SRDSVNLTWT-EPASDGGSKITNYIVEKCATTAERWLRVGQAR------ETRYT----VI 259

Query: 229 GLTPYTKYAIVVRGYNSVGKGPFSEP 254
            L   T Y   V   N  G    SEP
Sbjct: 260 NLFGKTSYQFRVIAENKFGLSKPSEP 285

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  123 bits (311), Expect = 1e-34
 Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
           S      ++      S L +      D G  +C A N  G   +   L+  +TP +P   
Sbjct: 61  SSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID 120

Query: 63  RITEESSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEMWPTQPLKIIVPGSQTSATLQP 120
           ++ E  S + Q+ +  P  +G   I +Y  ++++  EE+W ++         +   T+  
Sbjct: 121 QV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVG 179

Query: 121 LLPATQYQVRLLAENPLGMSETGAELQAST 150
           L P T Y VRL A N  G+ E  A  +  T
Sbjct: 180 LKPETTYAVRLAALNGKGLGEISAASEFKT 209

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 34/236 (14%), Positives = 71/236 (30%), Gaps = 34/236 (14%)

Query: 31  GTLSCLATNYHGTAEMTIQLLVQETPE--APKNIRITEESSRSLQISWTAPYSGNTAITQ 88
            T +  ++                 P+   P  +   E +  ++            + T 
Sbjct: 1   ATYAAASSALVPRGS------HMYAPKLQGPVAVYTWEGNQVNITC----EVFAYPSAT- 49

Query: 89  YIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPAT-----QYQVRLLAENPLGMSETG 143
            I  ++  + +  +    I +  + +++ L+ + P +      Y     A N +G     
Sbjct: 50  -ISWFRDGQLLPSSNYSNIKIYNTPSASYLE-VTPDSENDFGNYNCT--AVNRIGQESLE 105

Query: 144 AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGS 203
             L  +    +P+    E  S           +++  P        +L Y   ++     
Sbjct: 106 FILVQADTPSSPSIDQVEPYSS-------TAQVQFDEPEATG-GVPILKYKAEWRAVGEE 157

Query: 204 SLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
                 Y  K   ++        I GL P T YA+ +   N  G G  S     +T
Sbjct: 158 VWHSKWYDAKEASMEGIV----TIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  122 bits (309), Expect = 1e-33
 Identities = 43/215 (20%), Positives = 76/215 (35%), Gaps = 23/215 (10%)

Query: 36  LATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS 95
           +A ++H  +     L       AP +++ T+ +  SL   WT P   N  +T Y ++   
Sbjct: 1   MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTP 57

Query: 96  SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
            E+  P +   I +    +S  +  L+ AT+Y+V + A      S     +  +    +P
Sbjct: 58  KEKTGPMKE--INLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP 115

Query: 156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSV 215
              PR           T + I W+          + G+ V    ++G        T    
Sbjct: 116 ---PRRARVTD--ATETTITISWRTK-----TETITGFQVDAVPANGQ-------TPIQR 158

Query: 216 ELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
            +         I GL P T Y I +   N   +  
Sbjct: 159 TIKPDVR-SYTITGLQPGTDYKIYLYTLNDNARSS 192

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  107 bits (268), Expect = 1e-27
 Identities = 42/215 (19%), Positives = 67/215 (31%), Gaps = 26/215 (12%)

Query: 37  ATNYHGTAEMTIQLLVQET-PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS 95
           A     T+     ++        P+  R+T+ +  ++ ISW         IT + +    
Sbjct: 93  ALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTK---TETITGFQVDAVP 149

Query: 96  SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
           +    P Q     +     S T+  L P T Y++ L   N    S               
Sbjct: 150 ANGQTPIQ---RTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSS-----PVVIDASTA 201

Query: 156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSV 215
             AP  +        P  LL+ W+ P        + GY + Y+        +       V
Sbjct: 202 IDAPSNLRFLA--TTPNSLLVSWQPP-----RARITGYIIKYEKPGSPPREVVPRPRPGV 254

Query: 216 ELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
                   E  I GL P T+Y I V    +  K  
Sbjct: 255 T-------EATITGLEPGTEYTIYVIALKNNQKSE 282

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 25/128 (19%), Positives = 40/128 (31%), Gaps = 18/128 (14%)

Query: 132 LAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLL 191
           +A +    S     L+      A   AP ++      V PT L  +W  P     N  L 
Sbjct: 1   MAHHHHHHSSG---LEVLFQGPAI-PAPTDLKFTQ--VTPTSLSAQWTPP-----NVQLT 49

Query: 192 GYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPF 251
           GY V       +        +K + L       + + GL   TKY + V           
Sbjct: 50  GYRVRVTPKEKTG------PMKEINLAPD-SSSVVVSGLMVATKYEVSVYALKDTLTSRP 102

Query: 252 SEPFIART 259
           ++  +   
Sbjct: 103 AQGVVTTL 110

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  120 bits (303), Expect = 3e-32
 Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 22/199 (11%)

Query: 56  PEAPKNIRITEES-SRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
              P N+ +     +  L +SW    + +  IT Y I    +        L+ +V   Q+
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNG-QQGNSLEEVVHADQS 58

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL 174
           S T   L P  +Y V +        S     +  + +   P   P ++      + P  +
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVP---ISDTIIPAVP--PPTDLRFTN--IGPDTM 111

Query: 175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
            + W  PP    +  L  + V Y              +  + +    +  + +  L P T
Sbjct: 112 RVTWAPPP----SIDLTNFLVRYSPVKNEE------DVAELSISPS-DNAVVLTNLLPGT 160

Query: 235 KYAIVVRGYNSVGKGPFSE 253
           +Y + V       +     
Sbjct: 161 EYVVSVSSVYEQHESTPLR 179

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  117 bits (294), Expect = 6e-31
 Identities = 51/212 (24%), Positives = 78/212 (36%), Gaps = 24/212 (11%)

Query: 48  IQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKI 107
           ++   +   ++P  I  ++ ++ S  + W AP      IT Y I++         +P + 
Sbjct: 178 LRGRQKTGLDSPTGIDFSDITANSFTVHWIAP---RATITGYRIRHHPEHF--SGRPRED 232

Query: 108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPG 167
            VP S+ S TL  L P T+Y V ++A N    S           +   +  PR++     
Sbjct: 233 RVPHSRNSITLTNLTPGTEYVVSIVALNGREESPL-----LIGQQSTVSDVPRDLEVVA- 286

Query: 168 VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRI 227
              PT LLI W AP        +  Y + Y  + G+S         S            I
Sbjct: 287 -ATPTSLLISWDAP-----AVTVRYYRITYGETGGNSPVQEFTVPGSKS-------TATI 333

Query: 228 PGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
            GL P   Y I V      G  P S   I+  
Sbjct: 334 SGLKPGVDYTITVYAVTGRGDSPASSKPISIN 365

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  115 bits (289), Expect = 3e-30
 Identities = 33/217 (15%), Positives = 71/217 (32%), Gaps = 24/217 (11%)

Query: 37  ATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS 96
                  +   I   +      P ++R T     +++++W  P S +  +T ++++Y   
Sbjct: 77  TVKDDKESV-PISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPPSID--LTNFLVRYSPV 133

Query: 97  EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN 156
           +        ++ +  S  +  L  LLP T+Y V + +      S           ++   
Sbjct: 134 KNEEDVA--ELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTP-----LRGRQKTGL 186

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
            +P  +      +      + W AP        + GY + +     S          S  
Sbjct: 187 DSPTGIDFSD--ITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRVPHS-- 237

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
                   + +  LTP T+Y + +   N   + P   
Sbjct: 238 -----RNSITLTNLTPGTEYVVSIVALNGREESPLLI 269

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  120 bits (303), Expect = 4e-32
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 22/205 (10%)

Query: 56  PEAPKNIRITEESSRS-LQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
              P N+ +        L +SW    + +  IT Y I    +        L+ +V   Q+
Sbjct: 3   LSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNG-QQGNSLEEVVHADQS 59

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL 174
           S T   L P  +Y V +        S     +  + + E P     +++     +  + +
Sbjct: 60  SCTFDNLSPGLEYNVSVYTVKDDKESVP---ISDTIIPEVP--QLTDLSFVD--ITDSSI 112

Query: 175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
            ++W        +  ++GY +    +         +   S        G   + GL P  
Sbjct: 113 GLRWTPLN----SSTIIGYRITVVAAGEGIPIFEDFVDSS-------VGYYTVTGLEPGI 161

Query: 235 KYAIVVRGYNSVGKGPFSEPFIART 259
            Y I V    + G+   +       
Sbjct: 162 DYDISVITLINGGESAPTTLTQQTA 186

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  112 bits (281), Expect = 5e-29
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 23/202 (11%)

Query: 52  VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
            Q     P ++R T     +++++W  P S +  +T ++++Y   +        ++ +  
Sbjct: 183 QQTAVPPPTDLRFTNIGPDTMRVTWAPPPSID--LTNFLVRYSPVKNEEDVA--ELSISP 238

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP 171
           S  +  L  LLP T+Y V + +      S           ++    +P  +      +  
Sbjct: 239 SDNAVVLTNLLPGTEYVVSVSSVYEQHEST-----PLRGRQKTGLDSPTGIDFSD--ITA 291

Query: 172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT 231
               + W AP        + GY + +     S                     + +  LT
Sbjct: 292 NSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRV-------PHSRNSITLTNLT 339

Query: 232 PYTKYAIVVRGYNSVGKGPFSE 253
           P T+Y + +   N   + P   
Sbjct: 340 PGTEYVVSIVALNGREESPLLI 361

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  111 bits (280), Expect = 7e-29
 Identities = 32/222 (14%), Positives = 67/222 (30%), Gaps = 23/222 (10%)

Query: 32  TLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYII 91
            +S         +   I   +        ++   + +  S+ + WT   S    I  Y I
Sbjct: 73  NVSVYTVKDDKESV-PISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLNSST--IIGYRI 129

Query: 92  QYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
              ++ E  P    +  V  S    T+  L P   Y + ++     G S        +  
Sbjct: 130 TVVAAGEGIPIF--EDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAP-----TTLT 182

Query: 152 EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYT 211
           ++     P ++      + P  + + W  PP    +  L  + V Y          +  +
Sbjct: 183 QQTAVPPPTDLRFTN--IGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDV-AELS 235

Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
           +   +        + +  L P T+Y + V       +     
Sbjct: 236 ISPSDN------AVVLTNLLPGTEYVVSVSSVYEQHESTPLR 271

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score =  117 bits (296), Expect = 8e-32
 Identities = 43/254 (16%), Positives = 86/254 (33%), Gaps = 21/254 (8%)

Query: 4   RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGT---AEMTIQLLVQETPEAPK 60
             T  +  L++  ++   +   L  D    +    N  G    A +TI     +      
Sbjct: 47  TLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVM 106

Query: 61  NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP 120
           +++        L + WT P     ++ +YI+++    +  P         G+     L+ 
Sbjct: 107 DLK-AFPKDNMLWVEWTTP---RESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRG 162

Query: 121 -LLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWK 179
            L  +  Y + +      G       ++A   +  P+  P   T   G     E +++W 
Sbjct: 163 NLAESKCYLITVTPVYADGPGSP-ESIKAYLKQAPPSKGPTVRTKKVG---KNEAVLEWD 218

Query: 180 APPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIV 239
             P +  NG +  Y + Y+   G+    ++  + S         E  +  LT  T Y + 
Sbjct: 219 QLPVDVQNGFIRNYTIFYRTIIGNE---TAVNVDSSHT------EYTLSSLTSDTLYMVR 269

Query: 240 VRGYNSVGKGPFSE 253
           +  Y   G     E
Sbjct: 270 MAAYTDEGGKDGPE 283

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score =  106 bits (266), Expect = 2e-27
 Identities = 33/213 (15%), Positives = 61/213 (28%), Gaps = 28/213 (13%)

Query: 56  PEAPKNIRITEE----SSRSLQISWTA--PYSGNTAITQYIIQYKSSEEMWPTQPLKIIV 109
            +AP      +       R++Q+ W    P+  N  I  Y +     +           V
Sbjct: 5   SKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYT----V 60

Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVV 169
             ++ +      L   +Y   L   N +G S+  A L     +        ++ + P   
Sbjct: 61  NATKLTVN----LTNDRYLATLTVRNLVGKSDA-AVLTIPACDFQATHPVMDLKAFPK-- 113

Query: 170 DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG 229
               L ++W  P        +  Y + + + S      +       + D           
Sbjct: 114 -DNMLWVEWTTP-----RESVKKYILEWCVLSDK----APCITDWQQEDGTVHRTYLRGN 163

Query: 230 LTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
           L     Y I V    + G G   E   A   + 
Sbjct: 164 LAESKCYLITVTPVYADGPGS-PESIKAYLKQA 195

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 17/105 (16%)

Query: 152 EEAPNGAP---REVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS 208
           E+ P+ AP    ++           + + WK  P    NG +L Y+V             
Sbjct: 1   EDRPSKAPSFWYKIDPSH-TQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHL---Q 56

Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
           +YT+ + +L                 +Y   +   N VGK   + 
Sbjct: 57  NYTVNATKLT----------VNLTNDRYLATLTVRNLVGKSDAAV 91

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score =  112 bits (282), Expect = 1e-30
 Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 22/198 (11%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
                 P ++   + +  S+ + WT     ++ I  Y I   ++ E  P    +  V  S
Sbjct: 20  HMEVPQPTDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEGIPIF--EDFVDSS 75

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT 172
               T+  L P   Y + +      G S        +  ++     P ++      + P 
Sbjct: 76  VGYYTVTGLEPGIDYDISVYTVKNGGESTP-----TTLTQQTAVPPPTDLRFTN--IGPD 128

Query: 173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP 232
            + + W  PP    +  L  + V Y              +  + +    +  + +  L P
Sbjct: 129 TMRVTWAPPP----SIDLTNFLVRYSPVKNEE------DVAELSISP-SDNAVVLTNLLP 177

Query: 233 YTKYAIVVRGYNSVGKGP 250
            T+Y + V       +  
Sbjct: 178 GTEYVVSVSSVYEQHEST 195

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 74.1 bits (182), Expect = 3e-16
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 52  VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
            Q     P ++R T     +++++W  P S +  +T ++++Y   +       L   +  
Sbjct: 110 QQTAVPPPTDLRFTNIGPDTMRVTWAPPPSID--LTNFLVRYSPVKNEEDVAELS--ISP 165

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSE 141
           S  +  L  LLP T+Y V + +      S 
Sbjct: 166 SDNAVVLTNLLPGTEYVVSVSSVYEQHEST 195

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 15/104 (14%)

Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS 209
           +  E P   P +++     +  + + ++W        +  ++GY +    +         
Sbjct: 19  SHMEVP--QPTDLSFVD--ITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFED 70

Query: 210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
           +   S        G   + GL P   Y I V    + G+   + 
Sbjct: 71  FVDSS-------VGYYTVTGLEPGIDYDISVYTVKNGGESTPTT 107

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score =  108 bits (272), Expect = 5e-30
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 47  TIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLK 106
                V + P  P ++ +T++  +S+Q+SWT     N+ IT++II+Y+ +         +
Sbjct: 8   PTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQ 67

Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE-TGAELQASTLEEAPNGAPREV 162
             V G+QT+A L  L P   Y  R++A N +G S  + A  Q  T    P+  P   
Sbjct: 68  TEVSGTQTTAQLN-LSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSG 123

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score =  112 bits (283), Expect = 5e-30
 Identities = 34/207 (16%), Positives = 64/207 (30%), Gaps = 23/207 (11%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
               + P  I + + S     + WT P      +   +++Y               +   
Sbjct: 12  IPVIDGPTQILVRDVSDTVAFVEWTPP---RAKVDFILLKYGLVGGEGGKTT--FRLQPP 66

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT 172
            +  ++Q L P ++Y+V + A      S+      +ST       AP+ +         T
Sbjct: 67  LSQYSVQALRPGSRYEVSISAVRGTNESDA-----SSTQFTTEIDAPKNLRVGS--RTAT 119

Query: 173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP 232
            L ++W              Y V Y   +G       Y    V        +  +  L P
Sbjct: 120 SLDLEWDNSE-----AEAQEYKVVYSTLAG-----EQYHEVLVPKGIGPTTKTTLTDLVP 169

Query: 233 YTKYAIVVRGYNSVGKGPFSEPFIART 259
            T+Y + +    +  +        ART
Sbjct: 170 GTEYGVGISAVMNSKQSI-PATMNART 195

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 95.6 bits (238), Expect = 2e-23
 Identities = 41/198 (20%), Positives = 69/198 (34%), Gaps = 24/198 (12%)

Query: 55  TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
             +APKN+R+   ++ SL + W           +Y + Y +       + L     G  T
Sbjct: 104 EIDAPKNLRVGSRTATSLDLEWDNS---EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTT 160

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL 174
             TL  L+P T+Y V + A      S   A + A T       +PR++         T +
Sbjct: 161 KTTLTDLVPGTEYGVGISAVMNSKQSIP-ATMNARTEL----DSPRDLMVTA--SSETSI 213

Query: 175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
            + W        +G +  Y + +  SSG S          V +         +  L P  
Sbjct: 214 SLIWTKA-----SGPIDHYRITFTPSSGIS--------SEVTVPRD-RTSYTLTDLEPGA 259

Query: 235 KYAIVVRGYNSVGKGPFS 252
           +Y I +       +   S
Sbjct: 260 EYIISITAERGRQQSLES 277

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 52  VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
            +   ++P+++ +T  S  S+ + WT     +  I  Y I +  S  +       + VP 
Sbjct: 193 ARTELDSPRDLMVTASSETSISLIWTKA---SGPIDHYRITFTPSSGISSE----VTVPR 245

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
            +TS TL  L P  +Y + + AE     S   + + A T
Sbjct: 246 DRTSYTLTDLEPGAEYIISITAERGRQQSLE-STVDAFT 283

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score =  113 bits (283), Expect = 8e-30
 Identities = 37/243 (15%), Positives = 79/243 (32%), Gaps = 17/243 (6%)

Query: 15  GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQI 74
           GM   L + +V   DSG  SC      G    T+ LLV   PE P+     +    ++  
Sbjct: 57  GMGRRLLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVC 113

Query: 75  SWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKI----IVPGSQTSATLQPLLPATQYQVR 130
            W    + +   T+ ++  +  +        +           +     P   ++ Y V 
Sbjct: 114 EWGPRSTPS-LTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVS 172

Query: 131 LLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVL 190
           +   + +G   +                P  +T      +P  L + W+ P   + +   
Sbjct: 173 MCVASSVGSKFS-KTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYR 231

Query: 191 LGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
           L +++ Y+     +         +  +    +    I       ++ + +R     G+G 
Sbjct: 232 LRFELRYRAERSKT--------FTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGE 283

Query: 251 FSE 253
           +SE
Sbjct: 284 WSE 286

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score =  107 bits (268), Expect = 2e-29
 Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 144 AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGS 203
                ST E AP+G P +VT  P  V    + + WKAP +E  NGV+ GY +GY+ +S  
Sbjct: 4   GSSGISTEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61

Query: 204 SLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
           S    S        D++      +  L  + +Y +VV+ +N  G GP S    A T E 
Sbjct: 62  SNGQYSIVEMKATGDSE---VYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLES 117

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 68.9 bits (169), Expect = 5e-15
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 53  QETP-EAPKNIRITEESSRSLQISWTAPY--SGNTAITQYIIQYK--SSEEMWPTQPLKI 107
           +  P   P ++ +   +S+S+Q++W AP     N  I  Y I Y+  S         +++
Sbjct: 12  EAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEM 71

Query: 108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGA 158
              G     TL  L    QY V + A N  G   + +E+ A+TLE  P+  
Sbjct: 72  KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPSSG 122

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score =  106 bits (266), Expect = 4e-29
 Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 42  GTAEMTIQLLVQETPEAPKN--IRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM 99
           G++  +  L V++ P AP++    ++    R++ ++WT P+ GN+ + +YI++   +   
Sbjct: 4   GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAP 63

Query: 100 WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
           W        V    TS T++ L+PA  YQ RL A N +G  +   + +  +L E+ 
Sbjct: 64  WTVLLAS--VDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESG 117

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 13/117 (11%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S   A L+   L  AP      +++    V+   + + W  P     N  L+ Y +  
Sbjct: 4   GSSGRSAHLRVRQLPHAPEHPVATLST----VERRAINLTWTKPF--DGNSPLIRYILEM 57

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
             ++     L +                 + GL P   Y   +   N VGKG FS+ 
Sbjct: 58  SENNAPWTVLLASVDPK---ATSVT----VKGLVPARSYQFRLCAVNDVGKGQFSKD 107

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score =  104 bits (262), Expect = 2e-28
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +   ++A T +  P+  P++V      +  T + + W  PP +S NGV+  Y V Y
Sbjct: 1   GSSGSSGTIEARTAQSTPSAPPQKVMCVS--MGSTTVRVSWVPPPADSRNGVITQYSVAY 58

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
           +   G       + +  +  ++       + GL  +T+Y + VR +  VG GP S P + 
Sbjct: 59  EAVDGEDR--GRHVVDGISREHS---SWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLV 113

Query: 258 RTNEG 262
           RT+E 
Sbjct: 114 RTDED 118

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 78.2 bits (193), Expect = 2e-18
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 53  QETPE-APKNIRITEESSRSLQISWTAPYSG--NTAITQYIIQYKSSEEMWPTQPLKIIV 109
           Q TP   P+ +      S ++++SW  P +   N  ITQY + Y++ +     + +   +
Sbjct: 15  QSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGI 74

Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP 166
               +S  L  L   T+Y+V + A   +G     + +   T E+ P+G PR+V S P
Sbjct: 75  SREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGP 131

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score =  103 bits (260), Expect = 3e-28
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 128 QVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWN 187
                + N  G   +  ++   TL + P+  P+ V+ +  VV+   + + W  PP  + N
Sbjct: 3   SGS--SGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLE--VVNSRSIKVSWLPPPSGTQN 58

Query: 188 GVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVG 247
           G + GY + ++ ++          ++++E +N         GL   ++Y+  V      G
Sbjct: 59  GFITGYKIRHRKTT------RRGEMETLEPNNL---WYLFTGLEKGSQYSFQVSAMTVNG 109

Query: 248 KGPFSEPFIARTNE 261
            GP S  + A T E
Sbjct: 110 TGPPSNWYTAETPE 123

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 65.8 bits (161), Expect = 8e-14
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 34  SCLATNYHGTAEMTIQLLVQETPE-----APKNIRITEESSRSLQISWTAPYSG--NTAI 86
           S  + N +G    T  + V  T        P+N+ +   +SRS+++SW  P SG  N  I
Sbjct: 3   SGSSGNRYGPGVSTDDITVV-TLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61

Query: 87  TQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAEL 146
           T Y I+++ +      +     +  +        L   +QY  ++ A    G        
Sbjct: 62  TGYKIRHRKTTRRGEME----TLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWY 117

Query: 147 QASTLE 152
            A T E
Sbjct: 118 TAETPE 123

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score =  103 bits (258), Expect = 6e-28
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS 209
           + E+ P  AP  V  +   V+ T   + W   P +S  G L GY + Y  +  SS     
Sbjct: 9   SGEDLPMVAPGNVRVNV--VNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRR 66

Query: 210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
           +  K +      +    +PGL P++ Y + VR  N  G+GP S   +  T EG
Sbjct: 67  HIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEG 119

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 7/106 (6%)

Query: 57  EAPKNIRITEESSRSLQISWTAPY--SGNTAITQYIIQYK----SSEEMWPTQPLKII-V 109
            AP N+R+   +S   ++ W      S    +  Y I Y     SS+        KI+  
Sbjct: 16  VAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTF 75

Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
            GS+T   L  L P + Y + +   N  G      +   +T E + 
Sbjct: 76  QGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score =  107 bits (267), Expect = 1e-27
 Identities = 43/259 (16%), Positives = 87/259 (33%), Gaps = 16/259 (6%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSC--LATNYHGTAEMTIQLLVQETPEAPKNIRIT 65
           +EQ       +       +   +  L+C  L           I ++    PE PKN+   
Sbjct: 54  KEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCI 113

Query: 66  EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPAT 125
               + ++  W      +   T + ++ + +   +     K   P S T       +   
Sbjct: 114 VNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFADCKAKRDTPTSCT--VDYSTVYFV 170

Query: 126 QYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRES 185
             +V + AEN LG   +   +    + +     P  ++        + L + W  P    
Sbjct: 171 NIEVWVEAENALGKVTS-DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPS--I 227

Query: 186 WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS 245
            + ++L Y++ Y+    S+     ++    E          +  L P+T+Y   +R    
Sbjct: 228 KSVIILKYNIQYRTKDAST-----WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKE 282

Query: 246 VGKGPFSE---PFIARTNE 261
            GKG +S+        T E
Sbjct: 283 DGKGYWSDWSEEASGITYE 301

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 69.9 bits (170), Expect = 4e-14
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 37  ATNYHGTA---EMTIQLLVQETPEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYII 91
           A N  G      +    + +  P  P N+ +   EE S  L+++WT P   +  I +Y I
Sbjct: 178 AENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI 237

Query: 92  QYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG---MSETGAELQA 148
           QY++ +    +Q        +++S T+Q L P T+Y  R+      G    S+   E   
Sbjct: 238 QYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 297

Query: 149 STLEE 153
            T E+
Sbjct: 298 ITYED 302

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score =  104 bits (260), Expect = 1e-27
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 27/196 (13%)

Query: 55  TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
             + PK++ +++ +  +L + W  P        +Y + Y S           + +P   T
Sbjct: 6   DLDNPKDLEVSDPTETTLSLRWRRP---VAKFDRYRLTYVSPSGKKNE----MEIPVDST 58

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL 174
           S  L+ L   T+Y + L+AE     S+       +       G+P+ ++     +     
Sbjct: 59  SFILRGLDAGTEYTISLVAEKGRHKSKP-----TTIKGSTVVGSPKGISFSD--ITENSA 111

Query: 175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
            + W  P        +  Y V Y   +G        T   V +D   +   ++  L P  
Sbjct: 112 TVSWTPPR-----SRVDSYRVSYVPITGG-------TPNVVTVDGS-KTRTKLVKLVPGV 158

Query: 235 KYAIVVRGYNSVGKGP 250
            Y + +       +  
Sbjct: 159 DYNVNIISVKGFEESE 174

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 75.2 bits (185), Expect = 1e-16
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 52  VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
                 +PK I  ++ +  S  +SWT P    + +  Y + Y       P     + V G
Sbjct: 91  GSTVVGSPKGISFSDITENSATVSWTPP---RSRVDSYRVSYVPITGGTPNV---VTVDG 144

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
           S+T   L  L+P   Y V +++      SE        T  ++
Sbjct: 145 SKTRTKLVKLVPGVDYNVNIISVKGFEESEP-ISGILKTALDS 186

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score =  100 bits (252), Expect = 2e-27
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 12/112 (10%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+    P+G P+ +      +  +   + W  P     NG ++ Y V ++  +      
Sbjct: 1   GSSGSSGPSGFPQNLHVTG--LTTSTTELAWDPPVLAERNGRIISYTVVFRDIN------ 52

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
           S   L+++  D ++     + GL P T Y I VR + S G GP S    +RT
Sbjct: 53  SQQELQNITTDTRF----TLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 53  QETP-EAPKNIRITEESSRSLQISWTAPYSG--NTAITQYIIQYKSSEEMWPTQPLKIIV 109
              P   P+N+ +T  ++ + +++W  P     N  I  Y + ++        Q      
Sbjct: 5   SSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQ-----N 59

Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
             + T  TL  L P T Y +++ A    G       +Q+ T+
Sbjct: 60  ITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTM 101

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score =  101 bits (253), Expect = 3e-27
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +  ++   TL + P+ AP+ ++ +    +   ++I W+ P   + NG + GY + Y
Sbjct: 1   GSSGSSGDVAVRTLSDVPSAAPQNLSLEV--RNSKSIMIHWQPPAPATQNGQITGYKIRY 58

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
           +  +     ++   +   +L         I GL   T+Y   V      G GP ++   A
Sbjct: 59  R-KASRKSDVTETLVSGTQL------SQLIEGLDRGTEYNFRVAALTINGTGPATDWLSA 111

Query: 258 RTNEGD 263
            T E D
Sbjct: 112 ETFESD 117

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 68.5 bits (168), Expect = 8e-15
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSG--NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
            AP+N+ +   +S+S+ I W  P     N  IT Y I+Y+ +         + +V G+Q 
Sbjct: 20  AAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVT--ETLVSGTQL 77

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
           S  ++ L   T+Y  R+ A    G       L A T E   +   
Sbjct: 78  SQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 122

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 98.3 bits (245), Expect = 3e-26
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 149 STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS 208
           S+    P   P    +D   V+ T +++KW   P  + N  + G+ + Y+ +   S   S
Sbjct: 2   SSGSSGPVAGPYITFTDA--VNETTIMLKWMYIPASNNNTPIHGFYIYYRPTD--SDNDS 57

Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGD 263
            Y    VE D        I  L P T Y I ++ +N  G+  FS   I  T    
Sbjct: 58  DYKKDMVEGDRY---WHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARS 109

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 77.1 bits (190), Expect = 3e-18
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 2/105 (1%)

Query: 56  PEAPKNIRITEESSRSLQISWTA--PYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
              P        +  ++ + W      + NT I  + I Y+ ++    +   K +V G +
Sbjct: 9   VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGA 158
              ++  L P T Y +++   N  G SE    +   T   +   +
Sbjct: 69  YWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 97.9 bits (244), Expect = 4e-26
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 3/114 (2%)

Query: 42  GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP 101
           G++   I   +   P+ P   RI   +  SL + W AP    + I  +++++   +    
Sbjct: 4   GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGE 63

Query: 102 TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
                    GSQ    +  L PA   + RL A N  G S    E+   T   + 
Sbjct: 64  FCQ---CYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 17/124 (13%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTE--LLIKWKAPPRESWNGVLLGYDV 195
           G S +      +TL   P   P    + P + + T+  L ++WKAP        +  + +
Sbjct: 1   GSSGSSGAEIFTTLSCEP-DIP----NPPRIANRTKNSLTLQWKAP--SDNGSKIQNFVL 53

Query: 196 GYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF 255
            +    G+      Y         Q++    I  L+P       +   N  G   FSE  
Sbjct: 54  EWDEGKGNGEFCQCYMGS----QKQFK----ITKLSPAMGCKFRLSARNDYGTSGFSEEV 105

Query: 256 IART 259
           +  T
Sbjct: 106 LYYT 109

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score =  100 bits (249), Expect = 7e-26
 Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 28/217 (12%)

Query: 55  TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
           +      I  T     S  I W AP   +  I++YI++++    +   +  +  +PG   
Sbjct: 1   SGPVEVFITETPSQPNSHPIQWNAPQPSH--ISKYILRWRPKNSVGRWK--EATIPGHLN 56

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGV------ 168
           S T++ L P   Y+ +L++    G  E       +T    P  +                
Sbjct: 57  SYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVAT 116

Query: 169 ------VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYE 222
                 +  +  ++ W +         + G+ V Y++S            + ++L +   
Sbjct: 117 SESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGD------EPQYLDLPST-A 164

Query: 223 GELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
             + IP L P  KY + V   +  G+          T
Sbjct: 165 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 68.9 bits (168), Expect = 3e-14
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 43  TAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPT 102
           T+          +P    +  +TE ++ S  +SW +    +  ++ + ++Y+ SEE    
Sbjct: 99  TSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA---SDTVSGFRVEYELSEEGDEP 155

Query: 103 QPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
           Q   + +P + TS  +  LLP  +Y V +   +  G          +T
Sbjct: 156 Q--YLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 42.0 bits (98), Expect = 7e-05
 Identities = 17/106 (16%), Positives = 27/106 (25%), Gaps = 11/106 (10%)

Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
            P EV        P    I+W AP        +  Y + ++  +           K   +
Sbjct: 2   GPVEVFITETPSQPNSHPIQWNAPQ----PSHISKYILRWRPKNSVG------RWKEATI 51

Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGD 263
                    I GL P   Y   +      G    +      T+   
Sbjct: 52  PGH-LNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTST 96

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score =  103 bits (258), Expect = 2e-25
 Identities = 37/254 (14%), Positives = 70/254 (27%), Gaps = 18/254 (7%)

Query: 14  DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQ 73
           DG    + I N+    S   +               +     P+ P+ +       + + 
Sbjct: 242 DGENVAIKIRNISVSASSGTNV--VFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEII 299

Query: 74  ISWTAP---YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR 130
            SW             T Y +    S + +                  Q L     Y   
Sbjct: 300 CSWNPGRVTALVGPRATSYTLVESFSGK-YVRLKRAEAPTNESYQLLFQMLPNQEIYNFT 358

Query: 131 LLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVL 190
           L A NPLG S++   +  +  E+     P         ++ T + + W  P   +     
Sbjct: 359 LNAHNPLGRSQS--TILVNITEKVYPHTPTSFKVKD--INSTAVKLSWHLPGNFAKIN-- 412

Query: 191 LGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRG--YNSVGK 248
              ++  + S+            +++        + +  L PYT Y   +R         
Sbjct: 413 FLCEIEIKKSNSV----QEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKW 468

Query: 249 GPFSEPFIARTNEG 262
             +S      T E 
Sbjct: 469 SKWSNKKQHLTTEA 482

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 74.9 bits (183), Expect = 2e-15
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 32  TLSCLATNYHGTAEMTIQLLVQET--PEAPKNIRITEESSRSLQISWTAPYSGNTAITQY 89
             +  A N  G ++ TI + + E   P  P + ++ + +S ++++SW  P +        
Sbjct: 356 NFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLC 415

Query: 90  IIQYKSSEEMWPTQPLKII-VPGSQTSATLQPLLPATQY--QVRLLAENPLGMSETGAEL 146
            I+ K S  +   + + I  V  S     L  L P T Y  ++R   E     S+   + 
Sbjct: 416 EIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKK 475

Query: 147 QASTLEEA 154
           Q  T E +
Sbjct: 476 QHLTTEAS 483

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 52.5 bits (125), Expect = 5e-08
 Identities = 21/191 (10%), Positives = 53/191 (27%), Gaps = 13/191 (6%)

Query: 61  NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP 120
           +++    + +  Q SW AP          +   + S   +  +   I +P          
Sbjct: 1   DLKCVTNNLQVWQCSWKAPSGTGRGTDYEVCIEQRSRSCYQLEKTSIKIPALSH------ 54

Query: 121 LLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKA 180
                 Y++ + + +  G S +   L    +   P   P  +         + L +KW  
Sbjct: 55  ----GDYEITINSLHDFGSSTSKFTLNEQNVSLIP-DTPEILQLSA-DFSTSTLYLKWND 108

Query: 181 PPRESWNGVLLGYDVGYQISSGSS-LALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIV 239
                 +   + +++          + L ++       D  +              + + 
Sbjct: 109 RGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVE 168

Query: 240 VRGYNSVGKGP 250
           +R Y       
Sbjct: 169 IRCYIDNLHFS 179

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 96.4 bits (240), Expect = 2e-25
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +   + AST E AP+ AP  VT          + I+W  PP +  +G L+GY + +
Sbjct: 1   GSSGSSGWILASTTEGAPSVAPLNVTVFLNE-SSDNVDIRWMKPPTKQQDGELVGYRISH 59

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
              S      S   L+ V  +       RI          + +      G GPFS+P   
Sbjct: 60  VWQSAGI---SKELLEEVGQNGS---RARISVQVHNATCTVRIAAVTRGGVGPFSDPVKI 113

Query: 258 RTNEGD 263
                 
Sbjct: 114 FIPAHS 119

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 55.6 bits (134), Expect = 4e-10
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 55  TPE-----APKNIRITE-ESSRSLQISWTAPYSG--NTAITQYIIQYKSSEEMWPTQPLK 106
           T E     AP N+ +   ESS ++ I W  P +   +  +  Y I +        ++ L 
Sbjct: 13  TTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSA-GISKELL 71

Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             V  + + A +   +      VR+ A    G+      ++      + 
Sbjct: 72  EEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSG 120

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 94.7 bits (236), Expect = 6e-25
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P+  K  ++T  S+   Q++W  P S  T +T+Y +++   E        +I   G   S
Sbjct: 8   PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSM-----QICYCGPGLS 62

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGA 158
             ++ L PAT Y  R+ A + +G       +   T   +   +
Sbjct: 63  YEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSGPSS 105

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 51.5 bits (124), Expect = 6e-09
 Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 14/110 (12%)

Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS 209
           +   +     +           T   + W+ P        +  Y + +    GS      
Sbjct: 2   SSGSSGPDQCKPPQV--TCRSATCAQVNWEVPLSN--GTDVTEYRLEWGGVEGSMQICYC 57

Query: 210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
               S E+           GL+P T Y   V+  + VG GPFSE     T
Sbjct: 58  GPGLSYEIK----------GLSPATTYYCRVQALSVVGAGPFSEVVACVT 97

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 94.4 bits (235), Expect = 1e-24
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 6/116 (5%)

Query: 42  GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEM 99
           G++  +I + + + P  P+ ++I +    ++ ++WT P   GN AIT Y IQ        
Sbjct: 4   GSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63

Query: 100 WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
           W      +I    +TSAT+  L+   +Y  R+ +EN  G+SE     + S +    
Sbjct: 64  W----FTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARD 115

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 15/100 (15%)

Query: 157 GAPREVTSDPGVVD--PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKS 214
           G P        + D     + + W  PP++  N  + GY +              +T+  
Sbjct: 19  GPP----QIVKIEDVWGENVALTWT-PPKDDGNAAITGYTIQKADKKSME----WFTVIE 69

Query: 215 VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
                       I  L    +Y   V   N  G    +  
Sbjct: 70  HYHRTSA----TITELVIGNEYYFRVFSENMCGLSEDATM 105

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 96.2 bits (239), Expect = 3e-24
 Identities = 34/209 (16%), Positives = 72/209 (34%), Gaps = 14/209 (6%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           PE PKN+       + ++  W      +   T + ++ + +   +     K       + 
Sbjct: 8   PEKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFADCKAK--RDTPTSC 64

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELL 175
                 +     +V + AEN LG   +   +    + +     P  ++        + L 
Sbjct: 65  TVDYSTVYFVNIEVWVEAENALGKVTS-DHINFDPVYKVKPNPPHNLSVINSEELSSILK 123

Query: 176 IKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK 235
           + W  P     + ++L Y++ Y+    S+     ++    E          +  L P+T+
Sbjct: 124 LTWTNPS--IKSVIILKYNIQYRTKDAST-----WSQIPPEDTASTRSSFTVQDLKPFTE 176

Query: 236 YAIVVRGYNSVGKGPFSE---PFIARTNE 261
           Y   +R     GKG +S+        T E
Sbjct: 177 YVFRIRCMKEDGKGYWSDWSEEASGITYE 205

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 80.4 bits (198), Expect = 2e-18
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 37  ATNYHGTAE---MTIQLLVQETPEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYII 91
           A N  G      +    + +  P  P N+ +   EE S  L+++WT P   +  I +Y I
Sbjct: 82  AENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI 141

Query: 92  QYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM---SETGAELQA 148
           QY++ +    +Q        +++S T+Q L P T+Y  R+      G    S+   E   
Sbjct: 142 QYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 201

Query: 149 STLEEAPNGAP 159
            T E+ P+  P
Sbjct: 202 ITYEDRPSKEP 212

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 93.2 bits (232), Expect = 3e-24
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 12/126 (9%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +      ++ ++AP+ AP EV      +  +E+ + W+         ++  Y + Y
Sbjct: 1   GSSGSSGVAVINSAQDAPSEAPTEVGVKV--LSSSEISVHWEHVL----EKIVESYQIRY 54

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
             +     A +   + S E         R+  L P T+Y I V   NS G GP S+   A
Sbjct: 55  WAAHDKEEAANRVQVTSQEY------SARLENLLPDTQYFIEVGACNSAGCGPPSDMIEA 108

Query: 258 RTNEGD 263
            T +  
Sbjct: 109 FTKKAS 114

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 68.5 bits (168), Expect = 6e-15
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           EAP  + +   SS  + + W         +  Y I+Y ++ +       ++ V   + SA
Sbjct: 20  EAPTEVGVKVLSSSEISVHWEHVLEKI--VESYQIRYWAAHD-KEEAANRVQVTSQEYSA 76

Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
            L+ LLP TQY + + A N  G       ++A T + + 
Sbjct: 77  RLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 92.0 bits (229), Expect = 1e-23
 Identities = 25/100 (25%), Positives = 43/100 (43%)

Query: 42  GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP 101
           G++           PEAP    I+  S  S+ ++W    +G   I  + ++YK  +++  
Sbjct: 4   GSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGD 63

Query: 102 TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
                  +P S+ S  +  L     Y+ R+ A N LG SE
Sbjct: 64  WILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESE 103

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 90.5 bits (225), Expect = 3e-23
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 10/125 (8%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +   +   T E+AP+ APR+V +    +  T +L++WK P     NG + GY V Y
Sbjct: 1   GSSGSSGPVLTQTSEQAPSSAPRDVQARM--LSSTTILVQWKEPEE--PNGQIQGYRVYY 56

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
                 +  ++++   +V           I  L P   Y++ V  + S+G GP S     
Sbjct: 57  T--MDPTQHVNNWMKHNVADSQITT----IGNLVPQKTYSVKVLAFTSIGDGPLSSDIQV 110

Query: 258 RTNEG 262
            T  G
Sbjct: 111 ITQTG 115

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 69.4 bits (170), Expect = 3e-15
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
            AP++++    SS ++ + W  P   N  I  Y + Y                       
Sbjct: 20  SAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPT-QHVNNWMKHNVADSQIT 78

Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
           T+  L+P   Y V++LA   +G     +++Q  T   + 
Sbjct: 79  TIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 89.7 bits (223), Expect = 4e-23
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 7/106 (6%)

Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK 213
            P   P    ++   V  T++++KW   P  + N  + G+ + Y+     S   S Y   
Sbjct: 3   TPITGPHIAYTEA--VSDTQIMLKWTYIPSSNNNTPIQGFYIYYR--PTDSDNDSDYKRD 58

Query: 214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
            VE   Q      I  L P T Y I ++ +N  G+  FS   I  T
Sbjct: 59  VVEGSKQ---WHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 72.8 bits (179), Expect = 1e-16
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 58  APKNIRITEESSRSLQISWTAP--YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
            P        S   + + WT     + NT I  + I Y+ ++    +   + +V GS+  
Sbjct: 7   GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQW 66

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
             +  L P T Y +++   N  G SE    +   T
Sbjct: 67  HMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 90.2 bits (224), Expect = 4e-23
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEMWPTQPLKIIVP 110
              P +P   ++ E  S + Q+ +  P  +G   I +Y  ++++  EE+W ++       
Sbjct: 5   SSGPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 63

Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPG 167
             +   T+  L P T Y VRL A N  G+ E  A  +  T       AP+   S P 
Sbjct: 64  SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGSGPS 120

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+    P  +P     +P     +   +++   P  +    +L Y   ++         
Sbjct: 1   GSSGSSGP-SSPSIDQVEPY---SSTAQVQFD-EPEATGGVPILKYKAEWRAVGEEVWHS 55

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
             Y  K   ++        I GL P T YA+ +   N  G G  S     +T
Sbjct: 56  KWYDAKEASMEGIVT----IVGLKPETTYAVRLAALNGKGLGEISAASEFKT 103

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 89.4 bits (222), Expect = 9e-23
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 42  GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEEMW 100
           G++           P AP+++  +  S+R ++++W  P S  +     Y + Y   +E  
Sbjct: 4   GSSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYT--KEGI 61

Query: 101 PTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             + ++      +   T+Q L+PAT Y  R++A+N  G  E+ A L+  T  E+ 
Sbjct: 62  ARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESG 116

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 70.9 bits (174), Expect = 9e-16
 Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 11/124 (8%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +  E   +T    P  APR+V +    V    + + W+ P  +  +G  L Y V Y
Sbjct: 1   GSSGSSGEHAPATTGPLP-SAPRDVVASL--VSTRFIKLTWRTPASDP-HGDNLTYSVFY 56

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
                +         +     +  E ++ I  L P T Y   V   N  G G  S P   
Sbjct: 57  TKEGIA-------RERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRV 109

Query: 258 RTNE 261
            T  
Sbjct: 110 ETQP 113

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 88.9 bits (221), Expect = 2e-22
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 52  VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS----EEMWPTQPLKI 107
             E P  P N+ I+    RS+ + +   Y G T+I++++++ +       E W       
Sbjct: 14  PPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLS 73

Query: 108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE-TGAELQASTLEEAPNGA 158
             P +  S  +  L P T Y  R+   N +G S  +    +  TL+  P+  
Sbjct: 74  NEPDA-RSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGPSSG 124

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTE--LLIKWKAPPRESWNGVLLGYDV 195
           G S +   + +    E P G P    ++ G+ +     + ++++  P       +  + V
Sbjct: 1   GSSGSSGTISSGVPPELP-GPP----TNLGISNIGPRSVTLQFR--PGYDGKTSISRWLV 53

Query: 196 GYQIS-SGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
             Q+   G           S E D +    + +P L P+T Y+  +R  N VG  P S+P
Sbjct: 54  EAQVGVVGEGEEWLLIHQLSNEPDARS---MEVPDLNPFTCYSFRMRQVNIVGTSPPSQP 110

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 87.2 bits (216), Expect = 5e-22
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 52  VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
               P  P  I     S +S ++S T    G   I +YI++Y+S +     Q L+  V G
Sbjct: 5   SMREPSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKD--KEDQWLEKKVQG 61

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSE 141
           ++    L+ L     Y+V++ A N LG SE
Sbjct: 62  NKDHIILEHLQWTMGYEVQITAANRLGYSE 91

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 11/98 (11%), Positives = 24/98 (24%), Gaps = 12/98 (12%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
             P                +       +     +L Y V Y+           +  K V+
Sbjct: 10  SPPSIHGQP---SSGKSFKLSITKQ--DDGGAPILEYIVKYRSKDKED----QWLEKKVQ 60

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
            +      + +  L     Y + +   N +G    +  
Sbjct: 61  GNKD---HIILEHLQWTMGYEVQITAANRLGYSEPTVY 95

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 87.5 bits (217), Expect = 5e-22
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 52  VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
               P AP+++     SSR +++SW  P      I  + + +    +             
Sbjct: 14  SSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERA--LNTTQP 71

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
                T+  L P   Y  R++A N  G  E+   ++ +T  E+ 
Sbjct: 72  GSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESG 115

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 65.1 bits (159), Expect = 1e-13
 Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 12/126 (9%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +  +    +    P  APR+V      V    + + W+ P      G +  + V +
Sbjct: 1   GSSGSSGKPAIPSSSVLP-SAPRDVVPVL--VSSRFVRLSWRPP--AEAKGNIQTFTVFF 55

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
                +         +++        +L +  L P   Y   V  YN  G G  S+P   
Sbjct: 56  SREGDNRE-------RALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKV 108

Query: 258 RTNEGD 263
            T    
Sbjct: 109 ATQPES 114

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 86.7 bits (215), Expect = 8e-22
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+    P  AP+++T       P  +++ W+ P     NG +  Y + Y  +   ++ +
Sbjct: 1   GSSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEA--NGKITAYILFY--TLDKNIPI 56

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
             + ++++  D       +I  L   T Y   ++  NS G GP S+P + RT +
Sbjct: 57  DDWIMETISGDRL---THQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLK 107

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 81.7 bits (202), Expect = 6e-20
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 56  PEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
             APK++ +   E   R++ +SW  P   N  IT YI+ Y   + +     +   + G +
Sbjct: 9   TSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDR 68

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
            +  +  L   T Y  R+ A N  G+      +   TL+ + 
Sbjct: 69  LTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 92.3 bits (228), Expect = 3e-21
 Identities = 35/243 (14%), Positives = 73/243 (30%), Gaps = 14/243 (5%)

Query: 27  RQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYS----G 82
           R  S       +  H  +E         +     +  + E    S + ++          
Sbjct: 656 RTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFV 715

Query: 83  NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSET 142
                +              +        ++ S  +  L   T Y++ L A N     E 
Sbjct: 716 PRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEER 775

Query: 143 GAELQASTLEEAPNGAPREVTSDPGVV--DPTELLIKWKAPPRESWNGVLLGYDVGYQIS 200
            +     +    P     ++         +   + + W+ P  +  NG+++ Y+V Y+  
Sbjct: 776 CSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEP--KEPNGLIVLYEVSYRRY 833

Query: 201 SGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTN 260
               L L              E   R+ GL+P   Y++ +R  +  G G ++EP      
Sbjct: 834 GDEELHLCDTRKHFAL-----ERGCRLRGLSP-GNYSVRIRATSLAGNGSWTEPTYFYVT 887

Query: 261 EGD 263
           +  
Sbjct: 888 DYL 890

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 84.2 bits (207), Expect = 2e-18
 Identities = 26/236 (11%), Positives = 57/236 (24%), Gaps = 45/236 (19%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNT-AITQYIIQYKSSE-------------- 97
                          S   + + W   +  +   +  +++ YK +               
Sbjct: 466 ASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACG 525

Query: 98  -------EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETG-----AE 145
                  ++ P          +     ++ L P TQY + +                   
Sbjct: 526 SNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDI 585

Query: 146 LQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSL 205
           +   T    P   P +  S       +++++KWK P     NG +  Y V ++  +  S 
Sbjct: 586 IYVQTDATNP-SVPLDPISVS--NSSSQIILKWKPP--SDPNGNITHYLVFWERQAEDS- 639

Query: 206 ALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
                       +             P   ++      +S           A    
Sbjct: 640 ------------ELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECC 683

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 83.4 bits (205), Expect = 3e-18
 Identities = 27/202 (13%), Positives = 58/202 (28%), Gaps = 15/202 (7%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
              P  P +      SS  + + W  P   N  IT Y++ ++   E      L       
Sbjct: 592 ATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYC---- 647

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT 172
                    LP+  +     +E+    +++  E  A      P     ++  +   ++ +
Sbjct: 648 ----LKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCP-KTDSQILKE---LEES 699

Query: 173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP 232
                ++                      G++     +      ++   +  L I GL  
Sbjct: 700 SFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVN---KESLVISGLRH 756

Query: 233 YTKYAIVVRGYNSVGKGPFSEP 254
           +T Y I ++  N          
Sbjct: 757 FTGYRIELQACNQDTPEERCSV 778

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 62.6 bits (151), Expect = 3e-11
 Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 1/100 (1%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
            +    +      +  + + W  P   N  I  Y + Y+   +              +  
Sbjct: 793 DDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERG 852

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             L+ L P   Y VR+ A +  G             +   
Sbjct: 853 CRLRGLSP-GNYSVRIRATSLAGNGSWTEPTYFYVTDYLD 891

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 53.4 bits (127), Expect = 3e-08
 Identities = 41/264 (15%), Positives = 83/264 (31%), Gaps = 43/264 (16%)

Query: 38  TNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP------------------ 79
           T  +G+  + I+       E   N+ + EE S  L+I  +                    
Sbjct: 334 TVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETL 393

Query: 80  YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM 139
             GN +      Q       W    L  I  G         L  +  +++  ++      
Sbjct: 394 EIGNYSFYALDNQNLRQLWDWSKHNL-TITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQ 452

Query: 140 SETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQI 199
                ++   T  +  +     +          ++L++W+ P        LLG+ + Y+ 
Sbjct: 453 ERN--DIALKTNGDQASCENELLKFSYIRTSFDKILLRWE-PYWPPDFRDLLGFMLFYKE 509

Query: 200 ----------------SSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGY 243
                           S+  ++      L+S +  +Q      + GL P+T+YAI V+  
Sbjct: 510 APYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTL 569

Query: 244 NSVG-----KGPFSEPFIARTNEG 262
            +        G  S+    +T+  
Sbjct: 570 VTFSDERRTYGAKSDIIYVQTDAT 593

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 83.2 bits (206), Expect = 1e-20
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 54  ETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKS-SEEMWPTQPLKIIVPG 111
           +TP +P   ++ E  S + Q+ +  P  +G   I +Y  ++++  EE+W ++        
Sbjct: 5   DTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
            +   T+  L P T Y VRL A N  G+ E  A  +  T 
Sbjct: 64  MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 157 GAPREVTSDPGV--VDPTE--LLIKWKAPPRESWNGV-LLGYDVGYQISSGSSLALSSYT 211
           G+  +  S P +  V+P      +++  P      GV +L Y   ++           Y 
Sbjct: 1   GSHMDTPSSPSIDQVEPYSSTAQVQFDEPEAT--GGVPILKYKAEWRAVGEEVWHSKWYD 58

Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
            K   ++        I GL P T YA+ +   N  G G  S     +T
Sbjct: 59  AKEASMEGIV----TIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 83.6 bits (207), Expect = 2e-20
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 42  GTAEMTIQLLVQETPEAPKNIRITEE-SSRSLQISWTAP-YSGNTAITQYIIQYK--SSE 97
           G++ +       + P  P    +  +  S S +I+W  P  +G   I +Y+++    S+ 
Sbjct: 4   GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63

Query: 98  EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             W     ++I  G+        L P   Y++R+   +  G S     L   T   + 
Sbjct: 64  NKW-----EMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSG 116

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 15/124 (12%)

Query: 138 GMSETGAELQASTLEEAPNGAPR--EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDV 195
           G S +   ++ +T  + P G P    V      +      I W  PP+++    +  Y V
Sbjct: 1   GSSGSSGVVEFTTCPDKP-GIPVKPSVKGK---IHSHSFKITWD-PPKDNGGATINKYVV 55

Query: 196 GYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF 255
             +++ GS+   + +      + +    E     L P   Y + V   +  G+   SE  
Sbjct: 56  --EMAEGSNG--NKWE----MIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESL 107

Query: 256 IART 259
           + +T
Sbjct: 108 LVQT 111

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 82.5 bits (204), Expect = 3e-20
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
              P  + + + +  SL+ISW A YS    +  Y I Y  +    P Q  +  VPG  ++
Sbjct: 8   SSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQ--EFTVPGYYST 65

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
           AT+  L P   Y + + A +      
Sbjct: 66  ATISGLKPGVDYTITVYAYDTFFPGY 91

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 11/108 (10%)

Query: 152 EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYT 211
             + +  P ++        PT L I W A         +  Y + Y  + G S       
Sbjct: 4   GSSVSSVPTKLEVVD--ATPTSLKISWDAYYSS--WQNVKYYRITYGETGGDSPVQEFTV 59

Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
                  +       I GL P   Y I V  Y++   G      I+  
Sbjct: 60  PGYY---STAT----ISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 87.3 bits (215), Expect = 4e-20
 Identities = 40/267 (14%), Positives = 82/267 (30%), Gaps = 21/267 (7%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR-ITE 66
           ++++ +    S + + ++    +     L           ++L     P  P N+  +  
Sbjct: 51  QQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMN 110

Query: 67  ESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ-----TSATLQPL 121
            ++ SL   W      +   T + ++   S     TQ   I+    +      S   + L
Sbjct: 111 LTTSSLICQWEPGPETH-LPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHL 169

Query: 122 LPATQYQVRLLAENPLGMSE---TGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKW 178
           L      + + AEN LG S       +       E P     + + +        L + W
Sbjct: 170 LLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSW 229

Query: 179 KAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAI 238
           +              ++ ++   G +      +   V        +  + GL P T Y +
Sbjct: 230 EPWQPGLHIN--QKCELRHKPQRGEA------SWALVGPLPLEALQYELCGLLPATAYTL 281

Query: 239 VVRGYNSVGKG---PFSEPFIARTNEG 262
            +R       G    +S     RT E 
Sbjct: 282 QIRCIRWPLPGHWSDWSPSLELRTTER 308

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 82.0 bits (203), Expect = 4e-20
 Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P+ P ++ +TE ++ S+ ++W +    +  +T Y IQY+++    P Q    +   + T 
Sbjct: 8   PKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQ---EVDGVATTR 62

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
            ++  L P ++Y  R+LA N +G       ++A T E++ 
Sbjct: 63  YSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSG 102

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 19/115 (16%)

Query: 149 STLEEAPNGAPREVTSDPGVVDPTE--LLIKWKAPPRESWNGVLLGYDVGYQISSGSSLA 206
           S+    P   P     D  V + T   + + W +      +  +  Y + Y+ +      
Sbjct: 2   SSGSSGP-KPP----IDLVVTETTATSVTLTWDSGN----SEPVTYYGIQYRAAGTEG-- 50

Query: 207 LSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
                    E+D        I GL+P+++YA  V   NS+G+GP SE   ART E
Sbjct: 51  ------PFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE 99

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 81.7 bits (202), Expect = 6e-20
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
                 P N+ +  E+  SLQ+SWT P      +  Y + Y  +  + P +   + VPG+
Sbjct: 5   SSGRSPPSNLALASETPDSLQVSWTPP---LGRVLHYWLTYAPASGLGPEK--SVSVPGA 59

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP-NG 157
           ++  TL  L  AT+Y+V + A    G SE  +    +     P +G
Sbjct: 60  RSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGPSSG 105

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 14/98 (14%)

Query: 153 EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTL 212
            +    P  +        P  L + W  P      G +L Y + Y  +SG          
Sbjct: 5   SSGRSPPSNLALAS--ETPDSLQVSWTPP-----LGRVLHYWLTYAPASGLG------PE 51

Query: 213 KSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
           KSV +       + +P L   TKY ++V    + G+  
Sbjct: 52  KSVSVPGA-RSHVTLPDLQAATKYRVLVSAIYAAGRSE 88

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 82.1 bits (203), Expect = 7e-20
 Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 133 AENPLGMSE-TGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLL 191
           +   +G    +   +   TL++ P G P  +      V  T + + W+ P     NG++L
Sbjct: 5   SSGRIGDGSPSHPPILERTLDDVP-GPPMGILFPE--VRTTSVRLIWQPPAAP--NGIIL 59

Query: 192 GYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPF 251
            Y + +++++ ++   +   L           +    GL P + Y   +      G G  
Sbjct: 60  AYQITHRLNTTTANTATVEVLAPSAR------QYTATGLKPESVYLFRITAQTRKGWGEA 113

Query: 252 SEPFIARTNEGD 263
           +E  +  T +  
Sbjct: 114 AEALVVTTEKRS 125

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 79.8 bits (197), Expect = 5e-19
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 5/126 (3%)

Query: 34  SCLATNYHGTAEMTIQLLVQETPE----APKNIRITEESSRSLQISWTAPYSGNTAITQY 89
           S  ++   G    +   +++ T +     P  I   E  + S+++ W  P + N  I  Y
Sbjct: 2   SSGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAY 61

Query: 90  IIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAS 149
            I ++ +     T  ++ ++  S    T   L P + Y  R+ A+   G  E    L  +
Sbjct: 62  QITHRLNTTTANTATVE-VLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVT 120

Query: 150 TLEEAP 155
           T + + 
Sbjct: 121 TEKRSG 126

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 81.3 bits (201), Expect = 1e-19
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 43  TAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPT 102
           +        + + P  P   ++T+ +  S+ +SW     G    + YII+  S       
Sbjct: 3   SGSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSW 62

Query: 103 QPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
           Q +   V    T  T++ L P T Y   + A NP G+S+
Sbjct: 63  QTVANHVKT--TLYTVRGLRPNTIYLFMVRAINPQGLSD 99

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 81.2 bits (201), Expect = 1e-19
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
              P  P N +   ES  S+ +SWT P S    I  Y + YK  E     +    I    
Sbjct: 15  TGVPGQPLNFKAEPESETSILLSWTPPRSDT--IANYELVYKDGEHGEEQR----ITIEP 68

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
            TS  LQ L P + Y  RL A +P G+  + AE+ A T++ + 
Sbjct: 69  GTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSG 111

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 77.8 bits (192), Expect = 2e-18
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +  ++Q  T    P G P    ++P     T +L+ W  P     +  +  Y++ Y
Sbjct: 1   GSSGSSGDIQVITQTGVP-GQPLNFKAEP--ESETSILLSWTPPR----SDTIANYELVY 53

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
           +               ++E    Y     + GL P + Y   +   +  G G  +    A
Sbjct: 54  KDGEHGE-----EQRITIEPGTSYR----LQGLKPNSLYYFRLAARSPQGLGASTAEISA 104

Query: 258 RTNEGD 263
           RT +  
Sbjct: 105 RTMQSS 110

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 86.9 bits (214), Expect = 2e-19
 Identities = 32/249 (12%), Positives = 70/249 (28%), Gaps = 16/249 (6%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWT 77
             + I  +    S                   +     P+ P+ +       + +  SW 
Sbjct: 249 QTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWN 308

Query: 78  AP---YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE 134
                       T+Y +    S +      ++  +        +Q       +   L   
Sbjct: 309 PGRITGLVGPRNTEYTLFESISGKSAVFHRIE-GLTNETYRLGVQMHPGQEIHNFTLTGR 367

Query: 135 NPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYD 194
           NPLG +++   +  +  E      P  +      ++ T +   W  P   ++  + L   
Sbjct: 368 NPLGQAQS--AVVINVTERVAPHDPTSLKVKD--INSTVVTFSWYLPG--NFTKINLLCQ 421

Query: 195 VGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVR-GYNSVGK-GPFS 252
           +    ++            ++         + +  L PYT Y   VR    +  K   +S
Sbjct: 422 IEICKANSK----KEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWSRWS 477

Query: 253 EPFIARTNE 261
           +     T E
Sbjct: 478 DEKRHLTTE 486

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 27/205 (13%), Positives = 61/205 (29%), Gaps = 16/205 (7%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
            +  K+++ T  + R    +W AP   +    + I          P +   + +P     
Sbjct: 4   DDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLETTNVKIPA---- 59

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELL 175
                 L    ++V +   N      T  E   S + E P     ++++D      + LL
Sbjct: 60  ------LSPGDHEVTINYLNGFQSKFTLNEKDVSLIPETPEIL--DLSAD---FFTSSLL 108

Query: 176 IKWKAPPRESWNGVLLGYDVGY-QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
           +KW        +     +++   Q      +AL          D                
Sbjct: 109 LKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCA 168

Query: 235 KYAIVVRGYNSVGKGPFSEPFIART 259
            +++ +R +         + +   +
Sbjct: 169 THSVSIRWHIDSPHFSGYKEWSDWS 193

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 80.1 bits (198), Expect = 2e-19
 Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 56  PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
           P  P +  +T+     L + W+ P  + +     YI++ +     +  +P      G   
Sbjct: 8   PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKP---KYDGEDL 64

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
           + T++ L  +T+Y+ +++A N  G S     ++ +T  ++ 
Sbjct: 65  AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSG 105

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 16/114 (14%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVD--PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSL 205
            S+    P   P    + P +     T L ++W  P     +   + Y +  +  +    
Sbjct: 1   GSSGSSGP-SMP----ASPVLTKAGITWLSLQWSKPSGTP-SDEGISYILEMEEETSGYG 54

Query: 206 ALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
               Y  +    D  Y     +  L   TKY   V  YNS GK   SE     T
Sbjct: 55  FKPKYDGE----DLAYT----VKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT 100

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 79.7 bits (197), Expect = 3e-19
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
            +AP  I + + +  +  I+W  P   +  +  + + Y   +   P     I +   +  
Sbjct: 3   LDAPSQIEVKDVTDTTALITWMPP---SQPVDGFELTYGIKD--VPGDRTTIDLTEDENQ 57

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
            ++  L P T+Y+V L++      S   A+   +T   A 
Sbjct: 58  YSIGNLKPDTEYEVSLISRRGDMSSNP-AKETFTTGLAAA 96

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 14/93 (15%)

Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
           AP ++      V  T  LI W  P     +  + G+++ Y I              +++L
Sbjct: 5   APSQIEVKD--VTDTTALITWMPP-----SQPVDGFELTYGIKDVPG------DRTTIDL 51

Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
               E +  I  L P T+Y + +          
Sbjct: 52  TED-ENQYSIGNLKPDTEYEVSLISRRGDMSSN 83

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 78.7 bits (194), Expect = 6e-19
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
              P  + +   +  SL ISW AP S ++ +  Y I Y  +    P Q  +  VP S ++
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDAPMSSSS-VYYYRITYGETGGNSPVQ--EFTVPYSSST 61

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
           AT+  L P   Y + + A        
Sbjct: 62  ATISGLSPGVDYTITVYAWGEDSAGY 87

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 48.2 bits (115), Expect = 8e-08
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
             P ++        PT LLI W AP     +  +  Y + Y  + G+S       ++   
Sbjct: 6   SVPTKLEVVA--ATPTSLLISWDAPMS---SSSVYYYRITYGETGGNS------PVQEFT 54

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
           +         I GL+P   Y I V  +     G     
Sbjct: 55  VPYS-SSTATISGLSPGVDYTITVYAWGEDSAGYMFMY 91

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 79.2 bits (195), Expect = 6e-19
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 37  ATNYHGTAEMTIQLLVQET-PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS 95
           +++Y    +    L  Q +  + P  + +   +  SL ISW AP      +  Y I Y  
Sbjct: 9   SSDYKDDDDKGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAP---AVTVRYYRITYGE 65

Query: 96  SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
           +    P Q  +  VPGS+++AT+  L P   Y + + A   L +  
Sbjct: 66  TGGNSPVQ--EFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLML 109

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 17/120 (14%)

Query: 143 GAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSG 202
             + +    + + +  P ++        PT LLI W AP        +  Y + Y  + G
Sbjct: 16  DDKGENLYFQGSVSDVPTKLEVVA--ATPTSLLISWDAPA-----VTVRYYRITYGETGG 68

Query: 203 SSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFI---ART 259
           +S       ++   +    +    I GL P   Y I V     +         I    RT
Sbjct: 69  NS------PVQEFTVPGS-KSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYRT 121

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 78.7 bits (194), Expect = 8e-19
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
              P A  +IR+T  S  SL ++W  P + + A+  Y ++Y       P+      +  S
Sbjct: 5   SSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSS--VRFLKTS 62

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
           +  A L+ L     Y V++ A +  G    G E  + T  ++ 
Sbjct: 63  ENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSG 105

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 72.1 bits (177), Expect = 2e-16
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 12/114 (10%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+    P  A  ++        P+ L + W  P     +G +L Y+V Y          
Sbjct: 1   GSSGSSGP-PAVSDIRVTR--SSPSSLSLAWAVPRAP--SGAVLDYEVKYHEKGAEG-PS 54

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
           S   LK+ E          + GL     Y + VR  +  G GPF +   ++T  
Sbjct: 55  SVRFLKTSEN------RAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQL 102

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 77.5 bits (191), Expect = 2e-18
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
              P+++  ++ S  + ++ W         +    + Y SSE        +   PG+ TS
Sbjct: 8   LAPPRHLGFSDVSHDAARVFWEGAPR---PVRLVRVTYVSSEG---GHSGQTEAPGNATS 61

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
           A L PL  +T Y VR+    P G S T      +    +P+  P
Sbjct: 62  AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGP 105

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 15/97 (15%), Positives = 23/97 (23%), Gaps = 15/97 (15%)

Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK 213
           +    PR +      V      + W+  P       +    V Y  S G           
Sbjct: 6   SGLAPPRHLGFSD--VSHDAARVFWEGAP-----RPVRLVRVTYVSSEGGHS-------G 51

Query: 214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
             E          +  L+  T Y + V      G   
Sbjct: 52  QTEAPGN-ATSAMLGPLSSSTTYTVRVTCLYPGGGSS 87

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 77.4 bits (191), Expect = 2e-18
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIVPG 111
            + P    N+R    S  S+ ++W  P SGN  I  Y + Y     +          V  
Sbjct: 15  VQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQD------VDV 68

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
           S  S T+  L   T+Y  R++A N  G   +  ++   TL ++ 
Sbjct: 69  SSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG 112

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 74.7 bits (184), Expect = 3e-17
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 15/124 (12%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +   ++     + P G    + +      PT + + W+ P   S NG +  Y + Y
Sbjct: 1   GSSGSSGRVETQPEVQLP-GPAPNLRAYA--ASPTSITVTWETP--VSGNGEIQNYKLYY 55

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
                         +              I GL  YT+Y+  V  YN  G G  +     
Sbjct: 56  MEKGTDK----EQDVDVSSH------SYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAV 105

Query: 258 RTNE 261
           RT  
Sbjct: 106 RTLS 109

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 76.7 bits (189), Expect = 3e-18
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           +AP ++++T  +  S+ +SWT P +    IT Y I Y  S    P +P ++ VP S TS 
Sbjct: 3   DAPTDLQVTNVTDTSITVSWTPPSAT---ITGYRITYTPSN--GPGEPKELTVPPSSTSV 57

Query: 117 TLQPLLPATQYQVRLLAENPLGMSE 141
           T+  L P  +Y V + A      S 
Sbjct: 58  TITGLTPGVEYVVSVYALKDNQESP 82

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 14/94 (14%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
            AP ++      V  T + + W  P     +  + GY + Y  S+G          K + 
Sbjct: 3   DAPTDLQVTN--VTDTSITVSWTPP-----SATITGYRITYTPSNGPG------EPKELT 49

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
           +       + I GLTP  +Y + V       + P
Sbjct: 50  VPPS-STSVTITGLTPGVEYVVSVYALKDNQESP 82

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 77.7 bits (191), Expect = 3e-18
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 1/101 (0%)

Query: 56  PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
              P    + + +  S+++ W            +  +++   EE        +I  G  T
Sbjct: 16  LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYAT 75

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
              ++ L P T Y+ RL   +P G  E    +  +T  E+ 
Sbjct: 76  RHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 167 GVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR 226
           G V    + + W    +E   G      + + I          ++   +     Y     
Sbjct: 25  GKVTHHSIELYWDLEQKEKRQGPQ-EQWLRFSIEEEDP---KMHSYGVI--YTGYATRHV 78

Query: 227 IPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
           + GL P T Y   ++  +  G+  +S      T
Sbjct: 79  VEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT 111

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 76.7 bits (189), Expect = 3e-18
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
           APKN+ ++E +  SL++SWTAP +   A   ++IQY+ SE+    + + + VPGS+ S  
Sbjct: 4   APKNLVVSEVTEDSLRLSWTAPDA---AFDSFMIQYQESEK--VGEAINLTVPGSERSYD 58

Query: 118 LQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
           L  L P T+Y V +        S      + +T     
Sbjct: 59  LTGLKPGTEYTVSIYGVKGGHRSNP-LSAEFTTGGHHH 95

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 12/82 (14%)

Query: 169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP 228
           V    L + W AP     +     + + YQ S             ++ +    E    + 
Sbjct: 13  VTEDSLRLSWTAP-----DAAFDSFMIQYQESEKVG------EAINLTVPGS-ERSYDLT 60

Query: 229 GLTPYTKYAIVVRGYNSVGKGP 250
           GL P T+Y + + G     +  
Sbjct: 61  GLKPGTEYTVSIYGVKGGHRSN 82

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 76.7 bits (189), Expect = 5e-18
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
            + P+ P ++ +    +  + +SWT P + N  +  YII Y        T    + V   
Sbjct: 15  SQVPDQPSSLHVRP-QTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAET----VRVDSK 69

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSE 141
           Q   +++ L  ++ Y + L A N  G   
Sbjct: 70  QRYYSIERLESSSHYVISLKAFNNAGEGV 98

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +          + P   P  +   P       +++ W  P   + N V+ GY +GY
Sbjct: 1   GSSGSSGPENDLDESQVP-DQPSSLHVRPQ---TNCIIMSWTPP--LNPNIVVRGYIIGY 54

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG-PFSEPFI 256
            + S  +        ++V +D++ +    I  L   + Y I ++ +N+ G+G P  E   
Sbjct: 55  GVGSPYA--------ETVRVDSK-QRYYSIERLESSSHYVISLKAFNNAGEGVPLYESAT 105

Query: 257 ARTNEG 262
            R+   
Sbjct: 106 TRSITS 111

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 76.3 bits (188), Expect = 5e-18
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           + P NI++T  +  +  ++W  P      I   ++ +    +  P+    + +  S TS 
Sbjct: 3   QPPFNIKVTNITLTTAVVTWQPPILP---IEGILVTFGRKND--PSDETTVDLTSSITSL 57

Query: 117 TLQPLLPATQYQVRLLAENPLGMSE 141
           TL  L P T Y++R++A N    S 
Sbjct: 58  TLTNLEPNTTYEIRIVARNGQQYSP 82

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 45.5 bits (108), Expect = 9e-07
 Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 14/97 (14%)

Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
            P  +      +  T  ++ W+ P        + G  V +   +  S      T+     
Sbjct: 4   PPFNIKVTN--ITLTTAVVTWQPPI-----LPIEGILVTFGRKNDPS---DETTVDLTSS 53

Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
                    +  L P T Y I +   N     P    
Sbjct: 54  ITSL----TLTNLEPNTTYEIRIVARNGQQYSPPVST 86

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 76.8 bits (189), Expect = 5e-18
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 15/126 (11%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +   +  +T +  P+  P  V         T++L+ W+          + GY V Y
Sbjct: 1   GSSGSSGTVNVTTKKTPPSQPPGNVVW---NATDTKVLLNWEQVKAMENESEVTGYKVFY 57

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF-I 256
           + SS +++ + +    S EL            L     Y I V+     G G  SE   I
Sbjct: 58  RTSSQNNVQVLNTNKTSAEL-----------VLPIKEDYIIEVKATTDGGDGTSSEQIRI 106

Query: 257 ARTNEG 262
            R    
Sbjct: 107 PRITSS 112

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 76.1 bits (188), Expect = 5e-18
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
              P   +N++    S  S+ I+W  P   N  +  Y +              +  +   
Sbjct: 5   SSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVS-----TGKEQNIEVD 59

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             S  L+ L   T+Y +R LA N  G   +  ++   TL ++ 
Sbjct: 60  GLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG 102

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 15/114 (13%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+    P G    + +      PT +LI W+ P     NG + GY +           +
Sbjct: 1   GSSGSSGP-GPVENLQAVS--TSPTSILITWEPPAYA--NGPVQGYRLFCT-------EV 48

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
           S+   +++E+D       ++ GL  +T+Y++    YN  G G  ++     T  
Sbjct: 49  STGKEQNIEVDGL---SYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLS 99

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 76.5 bits (188), Expect = 5e-18
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
            + P+++ +   +  SL ISW +      +   Y I Y  +    P Q  +  VPG   +
Sbjct: 4   SDVPRDLEVVAATPTSLLISWDSG---RGSYQYYRITYGETGGNSPVQ--EFTVPGPVHT 58

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
           AT+  L P   Y + + A         G      +
Sbjct: 59  ATISGLKPGVDYTITVYAVTDHKPHADGPHTYHES 93

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 21/103 (20%), Positives = 28/103 (27%), Gaps = 14/103 (13%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
             PR++        PT LLI W +       G    Y + Y  + G+S          V 
Sbjct: 5   DVPRDLEVVA--ATPTSLLISWDSGR-----GSYQYYRITYGETGGNSPVQEFTVPGPVH 57

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
                     I GL P   Y I V                  +
Sbjct: 58  -------TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHES 93

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 76.3 bits (188), Expect = 6e-18
 Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 13/115 (11%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+    P  APR +           ++  W  P     +G++  Y V Y  S     A 
Sbjct: 1   GSSGSSGP-DAPRNLQLSLPREAEGVIVGHWAPP--IHTHGLIREYIVEYSRSGSKMWAS 57

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
                              I  L   T Y + V    S G G +S+     T +G
Sbjct: 58  QRAA----------SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKG 102

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 70.9 bits (174), Expect = 6e-16
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 53  QETPEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQYKSS-EEMWPTQPLKIIV 109
              P+AP+N++++   E+   +   W  P   +  I +YI++Y  S  +MW         
Sbjct: 5   SSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMW------ASQ 58

Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             +     ++ LL  T Y VR+ A    G+         +T++ + 
Sbjct: 59  RAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 76.1 bits (187), Expect = 7e-18
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
             +P    +   + R + + W  P      +  Y+++ +   + W  + L   V G++T 
Sbjct: 7   GLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGW--EVLDPAVAGTETE 64

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             +  L+    Y+ RL+A     +S+       ST   + 
Sbjct: 65  LLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 76.3 bits (188), Expect = 8e-18
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
              PE P ++ +      S+ +SWT P + N  +  Y I Y        T    I V   
Sbjct: 25  TRVPEVPSSLHVRP-LVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQT----IKVDYK 79

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSE-TGAELQASTLEEAPNGA 158
           Q   T++ L P++ Y + L A N +G                 P+  
Sbjct: 80  QRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPSSG 126

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 69.0 bits (169), Expect = 5e-15
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 20/134 (14%)

Query: 135 NPLGMSETGAELQASTLEEAPN-----GAPREVTSDPGVVDPTELLIKWKAPPRESWNGV 189
           +          L A T E   +       P  +   P     T +++ W  P  E+ N V
Sbjct: 2   SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPL---VTSIVVSWTPP--ENQNIV 56

Query: 190 LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG 249
           + GY +GY I S  +        +++++D + +    I  L P + Y I ++ +N+VG+G
Sbjct: 57  VRGYAIGYGIGSPHA--------QTIKVDYK-QRYYTIENLDPSSHYVITLKAFNNVGEG 107

Query: 250 -PFSEPFIARTNEG 262
            P  E  + R +  
Sbjct: 108 IPLYESAVTRPHTS 121

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 75.9 bits (187), Expect = 9e-18
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
              P     +     + RS+ +SW  P   N  I  Y I+Y   E          +    
Sbjct: 5   SSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNS---SMARSQ 61

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             +A +  L P   Y V++ A    G  +   ++   TL ++ 
Sbjct: 62  TNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSG 104

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 70.6 bits (173), Expect = 9e-16
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 13/114 (11%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+    P      +           + + W  P +   NG++L Y++ Y     +    
Sbjct: 1   GSSGSSGP-STVPIMHQVS--ATMRSITLSWPQPEQP--NGIILDYEIRYYEKEHNEF-- 53

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
           +S   +S           RI GL P   Y + VR     G G FS     +T  
Sbjct: 54  NSSMARSQTN------TARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLT 101

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 75.9 bits (187), Expect = 1e-17
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
           Q  P     IR       S+ + W  P   N  I +Y I+Y   ++   +      +   
Sbjct: 8   QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYS---TLKAV 64

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE-EAP 155
            T AT+  L P T+Y  ++ A    G       ++  T +   P
Sbjct: 65  TTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKPSGP 108

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 73.2 bits (180), Expect = 1e-16
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+ + AP      +  +      T + + W+ P +   NG++L Y++ Y          
Sbjct: 4   GSSGQAAP-SQVVVIRQER--AGQTSVSLLWQEPEQP--NGIILEYEIKYY--EKDKEMQ 56

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
           S  TLK+V           + GL P T+Y   VR   S G G FS+     T +
Sbjct: 57  SYSTLKAVTT------RATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 104

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 75.1 bits (185), Expect = 1e-17
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
              P  + +   +  SL ISW A  S    ++ Y I Y  +    P Q  +  VPGS ++
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDASSSS---VSYYRITYGETGGNSPVQ--EFTVPGSSST 59

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
           AT+  L P   Y + + A        
Sbjct: 60  ATISGLSPGVDYTITVYAYYSYYDLY 85

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 18/112 (16%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S++   P     EV +      PT LLI W A         +  Y + Y  + G+S   
Sbjct: 1   GSSVSSVPTKL--EVVA----ATPTSLLISWDASS-----SSVSYYRITYGETGGNSPVQ 49

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
                 S    +       I GL+P   Y I V  Y S     +S    +  
Sbjct: 50  EFTVPGSS---STAT----ISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 78.4 bits (192), Expect = 1e-17
 Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 11/207 (5%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS-SEEMWPTQPLKIIVPGSQTSA 116
            P NI     + +++ + WT P         Y +QY    ++ W  +     +  +    
Sbjct: 11  KPANITFLSINMKNV-LQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDL 69

Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLI 176
           + +      QY  R+ A      S+     +     E   G P    +     D   + +
Sbjct: 70  SAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALT----TDEKSISV 125

Query: 177 KWKAP--PRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
              AP   + +   + +     Y     +   L++ + ++          L +  L P T
Sbjct: 126 VLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNH-TLVLTWLEPNT 184

Query: 235 KYAIVVRGYNSV--GKGPFSEPFIART 259
            Y + V  +      +   SE   ART
Sbjct: 185 LYCVHVESFVPGPPRRAQPSEKQCART 211

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +       T E+ P G    ++     +  T L + W+ P  +  NG+L GY + +
Sbjct: 1   GSSGSSGPQLVRTHEDVP-GPVGHLSFSE--ILDTSLKVSWQEPGEK--NGILTGYRISW 55

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
           +  + ++  ++ Y             E R+ GLT  T Y I V    S G+G  S   I+
Sbjct: 56  EEYNRTNTRVTHYLPNVTL-------EYRVTGLTALTTYTIEVAAMTSKGQGQVSASTIS 108

Query: 258 RT 259
             
Sbjct: 109 SG 110

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 73.2 bits (180), Expect = 1e-16
 Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
           ++ P    ++  +E    SL++SW  P   N  +T Y I ++          +   +P  
Sbjct: 15  EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNR--TNTRVTHYLPNV 72

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
                +  L   T Y + + A    G    G    ++     P   P
Sbjct: 73  TLEYRVTGLTALTTYTIEVAAMTSKG---QGQVSASTISSGVPPSGP 116

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 74.8 bits (184), Expect = 2e-17
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           + PK +  T+    S++I+W +P      +++Y + Y S E+      L     G + +A
Sbjct: 3   DRPKGLAFTDVDVDSIKIAWESP---QGQVSRYRVTYSSPED--GIHELFPAPDGEEDTA 57

Query: 117 TLQPLLPATQYQVRLLAENPLGMSE 141
            LQ L P ++Y V ++A +    S+
Sbjct: 58  ELQGLRPGSEYTVSVVALHDDMESQ 82

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 14/93 (15%)

Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
            P+ +      VD   + I W++P      G +  Y V Y               +    
Sbjct: 4   RPKGLAFTD--VDVDSIKIAWESP-----QGQVSRYRVTYSSPEDG-------IHELFPA 49

Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
            +  E    + GL P ++Y + V   +   +  
Sbjct: 50  PDGEEDTAELQGLRPGSEYTVSVVALHDDMESQ 82

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 74.6 bits (183), Expect = 3e-17
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS----------SEEMWPTQPL 105
              P    +T  S  S+ + W  P +    I  + +QY+           ++ +   +P 
Sbjct: 3   TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 62

Query: 106 KIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAE 145
                G   +A++  L P   Y+ R+LA      ++    
Sbjct: 63  WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 9/98 (9%)

Query: 164 SDPGVVD--PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSS-----LALSSYTLKSVE 216
           + P V       ++++W  P  +     ++ + V Y++               Y      
Sbjct: 7   TPPNVTRLSDESVMLRWMVPRND--GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 64

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
            +        +  L P   Y   +    S      S  
Sbjct: 65  SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 74.4 bits (183), Expect = 3e-17
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P+ P  +R    +     + W  P +    +  Y IQ  +        PL+   PGS   
Sbjct: 8   PDGPTQLRALNLTEGFAVLHWKPPQN---PVDTYDIQVTAPG----APPLQAETPGSAVD 60

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP-NGAPREVTSD 165
             L  L+  T Y   +       ++   A +  +T  EAP +   +EVT  
Sbjct: 61  YPLHDLVLHTNYTATVRGLRGPNLTSP-ASITFTTGLEAPRDLEAKEVTPS 110

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 73.5 bits (181), Expect = 6e-17
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 56  PEAPKNIRITEE-SSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
           P      R+     ++ +Q+ W  P   G + I+ Y ++    E+  P +    +  GS+
Sbjct: 9   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPRE----VYQGSE 64

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
              T+  LLP   Y  RL A N +G      +   +T   + 
Sbjct: 65  VECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSG 106

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 25/111 (22%), Positives = 35/111 (31%), Gaps = 11/111 (9%)

Query: 149 STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS 208
           S+    P G         G     E+ ++W  PP       +  Y V             
Sbjct: 2   SSGSSGPPGPCLPPRL-QGRPKAKEIQLRWG-PPLVDGGSPISCYSVEMSPIEKDE---- 55

Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
                  E+    E E  +  L P   Y+  +R  N +G GPFSE     T
Sbjct: 56  -----PREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT 101

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 72.9 bits (179), Expect = 7e-17
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 55  TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
           +     +  +TE ++ S  +SW +       ++ + ++Y+ SEE    +P  + +P + T
Sbjct: 5   SHLVATSESVTEITASSFVVSWVSASD---TVSGFRVEYELSEE--GDEPQYLDLPSTAT 59

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
           S  +  LLP  +Y V +   +  G          +T
Sbjct: 60  SVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 78.5 bits (192), Expect = 8e-17
 Identities = 41/234 (17%), Positives = 67/234 (28%), Gaps = 19/234 (8%)

Query: 39  NYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQI-SWTAPYSGNTAITQYIIQYKSSE 97
              G       +      E P    I         +  W   Y+  T   Q++  +    
Sbjct: 188 WKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRN 247

Query: 98  EMWPTQPLKIIVPGSQTSAT----LQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
                   K I        T     Q +     Y +R+ A +    S    E++  T  +
Sbjct: 248 PGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQ 307

Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK 213
           A    P                I   AP +     V+  Y + Y+I    +   S+   K
Sbjct: 308 AFLLPPVFNIR----SLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWEN--TSNAERK 361

Query: 214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK----GPFSEPFIARTNEGD 263
            +E          +P L P T Y +  R +    K      FS+    +T  G+
Sbjct: 362 IIEKKTDVT----VPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGN 411

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 55.4 bits (132), Expect = 5e-09
 Identities = 26/194 (13%), Positives = 65/194 (33%), Gaps = 14/194 (7%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIVPGSQTSA 116
           +P+ + +       + + W      +     +   Y+ +  + W        +  ++ + 
Sbjct: 10  SPQKVEVDIIDDNFI-LRWNRS-DESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNF 67

Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLI 176
           +   L    + ++R+ AE     S        +   +A  G P EV  +    +   ++I
Sbjct: 68  SSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPP-EVHLEA---EDKAIVI 122

Query: 177 KWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY 236
                 ++S    L G    Y +    +   S    +   + ++++    I  L+P T Y
Sbjct: 123 HISPGTKDSVMWALDGLSFTYSLVIWKN--SSGVEERIENIYSRHK----IYKLSPETTY 176

Query: 237 AIVVRGYNSVGKGP 250
            + V+         
Sbjct: 177 CLKVKAALLTSWKI 190

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 73.3 bits (180), Expect = 9e-17
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 56  PEAPK-NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
           P  P   +      + S  +SW  P         YI++          +    +  G +T
Sbjct: 10  PATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFRE----VYVGKET 65

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             T+  L   + Y  R+ A N  G+S     L   T E + 
Sbjct: 66  MCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 13/111 (11%)

Query: 154 APNGAPREVTSDPGV--VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYT 211
           +    P                  + WK PP         GY +     +G         
Sbjct: 5   SSGPVPATPILQLEECCTHNNSATLSWKQPPLS--TVPADGYILELDDGNGGQF------ 56

Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
               E+    E    + GL   + Y   V+ +N  G  P+S+  + +T+EG
Sbjct: 57  ---REVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEG 104

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 72.9 bits (179), Expect = 1e-16
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
            EAP+++   E + R+  ++WT P         Y++ + +           I++PG  TS
Sbjct: 8   LEAPRDLEAKEVTPRTALLTWTEPPVR---PAGYLLSFHTPGGQTQE----ILLPGGITS 60

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
             L  L P+T Y  RL A     +  
Sbjct: 61  HQLLGLFPSTSYNARLQAMWGQSLLP 86

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 16/96 (16%)

Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
           APR++ +    V P   L+ W  PP         GY + +    G          + + L
Sbjct: 10  APRDLEAKE--VTPRTALLTWTEPP-----VRPAGYLLSFHTPGG--------QTQEILL 54

Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
                   ++ GL P T Y   ++        P   
Sbjct: 55  PGG-ITSHQLLGLFPSTSYNARLQAMWGQSLLPPVS 89

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 75.6 bits (185), Expect = 1e-16
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 19/211 (9%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS-EEMWPTQPLKIIVPG 111
                 P+ ++    +  ++ + W    +     + Y +QYK   +  W  +        
Sbjct: 5   THESLKPQRVQFQSRNFHNI-LQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQE 63

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP 171
                T +       Y  R+ A +    SE     + +   E     P  +         
Sbjct: 64  LSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPP-VMNITQ---VN 119

Query: 172 TELLIKWKAP------PRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGEL 225
             LL+   AP       +E    +   Y++ Y++   +         K  E  ++    +
Sbjct: 120 GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIIN--NSLEKEQKVYEGAHR---AV 174

Query: 226 RIPGLTPYTKYAIVVRGYNSV--GKGPFSEP 254
            I  LTP++ Y +V   Y  +   +   SE 
Sbjct: 175 EIEALTPHSSYCVVAEIYQPMLDRRSQRSEE 205

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 74.1 bits (181), Expect = 4e-16
 Identities = 37/218 (16%), Positives = 66/218 (30%), Gaps = 21/218 (9%)

Query: 56  PEAPKNIR-ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ- 113
           P +P N+  +   ++ SL   W      +   T +I++   S      Q   I    ++ 
Sbjct: 5   PASPSNLSCLMHLTTNSLVCQWEPGPETH-LPTSFILKSFRSRADCQYQGDTIPDCVAKK 63

Query: 114 ----TSATLQPLLPATQYQVRLLAENPLGM---SETGAELQASTLEEAPNGAPREVTSDP 166
                S   + LL      + + AEN LG     +   +       E P     ++  D 
Sbjct: 64  RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDV 123

Query: 167 GVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR 226
               P  L + WK         +    ++ YQ     +          V      + +  
Sbjct: 124 VSHQPGCLWLSWKPWK--PSEYMEQECELRYQPQLKGA------NWTLVFHLPSSKDQFE 175

Query: 227 IPGLTPYTKYAIVVRGYNSVGKGPFSE---PFIARTNE 261
           + GL     Y + +R   S   G +S        R   
Sbjct: 176 LCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTM 213

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 71.2 bits (174), Expect = 5e-16
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 54  ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE------MWPTQPLKI 107
            +      + +T+ ++ SL+++W AP     A   +++++             P    ++
Sbjct: 7   GSRPRLSQLSVTDVTTSSLRLNWEAPPG---AFDSFLLRFGVPSPSTLEPHPRPLLQREL 63

Query: 108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNG 157
           +VPG++ SA L+ L   T Y + L        +++  +  A TL    +G
Sbjct: 64  MVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADS-IQGTARTLSGPSSG 112

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 15/119 (12%)

Query: 147 QASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLA 206
            + +    P  +   VT     V  + L + W+APP     G    + + + + S S+L 
Sbjct: 2   SSGSSGSRPRLSQLSVTD----VTTSSLRLNWEAPP-----GAFDSFLLRFGVPSPSTLE 52

Query: 207 LSSYTLKSVELDNQYEGELR---IPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
                L   EL     G      +  L   T Y++ + G     K   S    ART  G
Sbjct: 53  PHPRPLLQREL--MVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKAD-SIQGTARTLSG 108

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 71.3 bits (175), Expect = 6e-16
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 10/120 (8%)

Query: 42  GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK--SSEEM 99
           G++      L    P+ P  +  +     SL++SW  P      +  Y ++Y+  +  E+
Sbjct: 4   GSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEP-RCERPLQGYSVEYQLLNGGEL 62

Query: 100 WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
                   I   +QTS  ++ LLP   Y  R+ A++  G    G E +     E+    P
Sbjct: 63  HRLN----IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEG---WGREREGVITIESQVSGP 115

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 62.8 bits (153), Expect = 8e-13
 Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 13/122 (10%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +     +      P   P  +      + PT L + W+ P        L GY V Y
Sbjct: 1   GSSGSSGSHDSRLTAGVP-DTPTRLVFSA--LGPTSLRVSWQEPRC---ERPLQGYSVEY 54

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
           Q+ +G         L  + + N  +  + +  L P   Y   VR  +  G G   E  I 
Sbjct: 55  QLLNGG-------ELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVIT 107

Query: 258 RT 259
             
Sbjct: 108 IE 109

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 71.1 bits (174), Expect = 8e-16
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 165 DPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGE 224
           +P V+ PT + + W    +  +   + GY V Y+ +SG     ++ + ++++     E  
Sbjct: 23  NPVVLTPTTVQVTWTVDRQPQF---IQGYRVMYRQTSGLQ---ATSSWQNLDAKVPTERS 76

Query: 225 LRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
             +  L     Y I VR Y +  +G  SE    RT E
Sbjct: 77  AVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 64  ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKI--IVPGSQTSATLQPL 121
               +  ++Q++WT        I  Y + Y+ +  +  T   +       ++ SA L  L
Sbjct: 24  PVVLTPTTVQVTWTVD-RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNL 82

Query: 122 LPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
                Y++++                  T EE+ 
Sbjct: 83  KKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESG 116

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 70.5 bits (173), Expect = 8e-16
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P  P  + I+  +  +  + W  P      +  Y +QY  ++E  P     I        
Sbjct: 8   PGRP-TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPN---TIDFGKDDQH 63

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
            T+  L   T Y  RL A+N  G+ E   E +  T E+   G  
Sbjct: 64  FTVTGLHKGTTYIFRLAAKNRAGLGEE-FEKEIRTPEDLS-GPS 105

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 60.5 bits (147), Expect = 4e-12
 Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+    P G P  + S          L++W  P  +   G LLGY + Y  +  +    
Sbjct: 1   GSSGSSGP-GRPTMMIST---TAMNTALLQWHPP--KELPGELLGYRLQYCRADEARPNT 54

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
             +       D  +     + GL   T Y   +   N  G G   E  I    +
Sbjct: 55  IDFGKD----DQHF----TVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPED 100

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 70.0 bits (171), Expect = 3e-15
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 8/117 (6%)

Query: 52  VQETPEAPKNIRITEESSRSLQISWTAPYSGNTA-----ITQYIIQYKSS-EEMWPTQPL 105
            +           ++  +R++ ++W+ P S             +  Y+            
Sbjct: 14  FEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKY 73

Query: 106 KIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN--GAPR 160
           K +  G +T+ TL  L PA  Y  ++ AE              +TL   P+    PR
Sbjct: 74  KSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPR 130

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 49.2 bits (117), Expect = 8e-08
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 4/122 (3%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +  + +    E   +   + V SD   +    +++ W  PP    NG      V  
Sbjct: 1   GSSGSSGDEETKAFEALLSNIVKPVASD---IQARTVVLTWS-PPSSLINGETDESSVPE 56

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
                  ++ +    K   +    E  + +  L P   Y   V+   +  KG  SE  I 
Sbjct: 57  LYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIF 116

Query: 258 RT 259
            T
Sbjct: 117 TT 118

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 68.5 bits (168), Expect = 4e-15
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 56  PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSS-EEMWPTQPLKIIVPGSQ 113
             AP+++ + + +  +  + W  P   G   I  Y+++Y     E W   P     P  +
Sbjct: 9   TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEW--VPANK-EPVER 65

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
              T++ L    +   R++  N  G SE    LQ  T+ E+ 
Sbjct: 66  CGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESG 107

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 10/107 (9%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+    P  AP+ +T +   V  T   +KW+ P R    G + GY V Y +        
Sbjct: 1   GSSGSSGPTSAPQHLTVE--DVTDTTTTLKWRPPDRIG-AGGIDGYLVEYCLEGSE---- 53

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
                     +        +  L    +    V G N  G+   +  
Sbjct: 54  ---EWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATL 97

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 68.7 bits (168), Expect = 6e-15
 Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 7/107 (6%)

Query: 56  PEAPKNIRITEESSRSLQISWTAP----YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
              P  ++    +  ++++SW           + +  Y +++++S               
Sbjct: 19  MLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYK---SEDT 75

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGA 158
           +  S T   L P T Y+  ++       S       A+T E +   +
Sbjct: 76  TSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSS 122

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 65.3 bits (159), Expect = 9e-14
 Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 12/127 (9%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP--PRESWNGVLLGYDV 195
           G S +     +      P   P  V +    +    + + W     P+      +  Y V
Sbjct: 1   GSSGSSGFPTSVPDLSTPMLPPVGVQAV--ALTHDAVRVSWADNSVPKNQKTSEVRLYTV 58

Query: 196 GYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF 255
            ++ S  +S           + ++         GL P T Y   V    +     +S   
Sbjct: 59  RWRTSFSAS--------AKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTA 110

Query: 256 IARTNEG 262
            A T E 
Sbjct: 111 HATTYEA 117

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 67.9 bits (166), Expect = 9e-15
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 7/104 (6%)

Query: 56  PEAPKNIRITEESSRSLQISWTAP----YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
              P  ++ +  S  +++I+W       +   T    Y +++K++    P          
Sbjct: 9   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTN---IPANTKYKNANA 65

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
           +  S  +  L P T Y+  ++       S        +T E + 
Sbjct: 66  TTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSG 109

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 66.8 bits (163), Expect = 2e-14
 Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 12/117 (10%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP--PRESWNGVLLGYDVGYQISSGSSL 205
            S+    P   P  V +   ++    + I W     P+         Y V ++ +  ++ 
Sbjct: 1   GSSGSSGPMMPPVGVQAS--ILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPAN- 57

Query: 206 ALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
                     +  N       + GL P T Y   V          +S      T E 
Sbjct: 58  -------TKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFEL 107

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 5/119 (4%)

Query: 49  QLLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKI 107
            +     PE P+   I      ++ +SW  P   G + +T Y I+ + +     +     
Sbjct: 3   MVADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSP---- 58

Query: 108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP 166
                 T  T++ L    QY+ R++AEN  G S+         +        R    D 
Sbjct: 59  CAKSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDE 117

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 68.9 bits (168), Expect = 3e-14
 Identities = 33/207 (15%), Positives = 63/207 (30%), Gaps = 21/207 (10%)

Query: 57  EAPKNIR-ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKI-------- 107
           +   NI   T+     +   W+     + A +   ++Y  S       P           
Sbjct: 2   DVNINISCETDGYLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDC 61

Query: 108 -IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP 166
            +          QP+   + Y + +   + LG  ++                P  V ++ 
Sbjct: 62  YLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDS-PPTCVLPDSVVKPLPPSSVKAEI 120

Query: 167 GVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR 226
             ++   L I W+ P     N   L + + Y       L+      K  E+ +     + 
Sbjct: 121 -TINIGLLKISWEKPVFPENN---LQFQIRYG------LSGKEVQWKMYEVYDAKSKSVS 170

Query: 227 IPGLTPYTKYAIVVRGYNSVGKGPFSE 253
           +P       YA+ VR     G G +S 
Sbjct: 171 LPVPDLCAVYAVQVRCKRLDGLGYWSN 197

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 65.6 bits (160), Expect = 5e-14
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 55  TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
               P+ + +   + R++ ++W          T Y+++   +      +  +  V   + 
Sbjct: 8   PLPPPRALTLAAVTPRTVHLTWQPS----AGATHYLVRCSPASPKGEEEERE--VQVGRP 61

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP-NG 157
              L  L P   Y+V + +      SE    ++A T    P +G
Sbjct: 62  EVLLDGLEPGRDYEVSVQSLRGPEGSEA-RGIRARTPTSGPSSG 104

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 15/103 (14%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+    P   PR +T     V P  + + W+     +       Y V    +S      
Sbjct: 1   GSSGSSGPLPPPRALTLAA--VTPRTVHLTWQPSAGAT------HYLVRCSPASPKGEEE 52

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
                + V++      E+ + GL P   Y + V+         
Sbjct: 53  E----REVQVGRP---EVLLDGLEPGRDYEVSVQSLRGPEGSE 88

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 67.8 bits (165), Expect = 6e-14
 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 32/218 (14%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
            P+N+R+   + +++ + W +P      +T +  QY S             +  + T   
Sbjct: 4   PPENVRMNSVNFKNI-LQWESPAFAKGQLT-FTAQYLSYRIFQDK-----CMQTTLTECD 56

Query: 118 LQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIK 177
              L     + +R+ AE     S+      +   +      P  +      V    L ++
Sbjct: 57  FSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTII--GPPGMQV---EVLADCLHMR 111

Query: 178 WKAPPRES--------WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG 229
           + AP  E+               Y+V Y           +       L N          
Sbjct: 112 FLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRN---------- 161

Query: 230 LTPYTKYAIVVRGYNSV--GKGPFSEPFIARTNEGDFL 265
           L P+T Y + VRG+       G +SEP   +T   + +
Sbjct: 162 LEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETV 199

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 65.5 bits (160), Expect = 6e-14
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 56  PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSS-EEMWPTQPLKIIVPGSQ 113
              P  + +   +  ++ + W  P + G   +  Y+++Y     E W            +
Sbjct: 8   TSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVA---NKDLIDK 64

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
           T  T+  L    +  VR+ A N  G SE     Q   ++E+ 
Sbjct: 65  TKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESG 106

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 152 EEAPNGAPREVTSDPGVVD--PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS 209
             +    P    +   V     T + ++W+ P        L GY + Y         +++
Sbjct: 4   GSSGTSPP----TLLTVDSVTDTTVTMRWRPPDHIG-AAGLDGYVLEYCFEGTEDWIVAN 58

Query: 210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
             L           +  I GL    K  + V+  N+ G       
Sbjct: 59  KDLIDKT-------KFTITGLPTDAKIFVRVKAVNAAGASEPKYY 96

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 65.4 bits (160), Expect = 8e-14
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 56  PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
            + P        +  ++ + W  P Y+G   IT YI++ +        +         + 
Sbjct: 11  IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKA--NFSNILEN 68

Query: 115 SATLQPLLPATQYQVRLLAENPLG-MSETGAELQASTLEEAP 155
             T+  L     Y+ R++A+N  G +S       A T  +  
Sbjct: 69  EFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 110

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 67.0 bits (163), Expect = 1e-13
 Identities = 36/210 (17%), Positives = 63/210 (30%), Gaps = 17/210 (8%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIVPGSQT 114
           P  P+  +    +  +    W     G    T Y + Y    E +    P  I    +  
Sbjct: 4   PGKPEIFKCRSPNKETFTCWWRPGTDGG-LPTNYSLTYHREGETLMHECPDYITGGPNSC 62

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTE- 173
               Q       Y + + A N +G S +  EL            P E+  +    +  + 
Sbjct: 63  HFGKQYTSMWRTYIMMVNATNQMGSSFS-DELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121

Query: 174 -LLIKWKAPPRESW--NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL 230
            L IKW  P           L Y++  +         + + +       +++    I  L
Sbjct: 122 YLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKA-----AEWEIHFAGQQTEFK----ILSL 172

Query: 231 TPYTKYAIVVRGYNSVGK-GPFSEPFIART 259
            P  KY + VR     G    +S     + 
Sbjct: 173 HPGQKYLVQVRCKPDHGYWSAWSPATFIQI 202

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 68.5 bits (166), Expect = 2e-13
 Identities = 29/232 (12%), Positives = 76/232 (32%), Gaps = 21/232 (9%)

Query: 45  EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSG------NTAITQYIIQYKSSEE 98
            +T+ L     P  P++++I+ +      ++W+           +    ++ + YK  ++
Sbjct: 98  RLTVTLTQHVQPPEPRDLQISTDQDH-FLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQD 156

Query: 99  MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAS---TLEEAP 155
            W      ++   SQ +   + L+P++ Y  R+      G   +G   + S     +  P
Sbjct: 157 SWEDAA-ILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQP 215

Query: 156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSV 215
               +    +        L   W+     + +     + + Y+ S  +           +
Sbjct: 216 GDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVS---FGLFYKPSPDA-------GSAVL 265

Query: 216 ELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFL 267
             + +    LR    + +T++   +   +    G +      R  E      
Sbjct: 266 LREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSS 317

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 49.6 bits (117), Expect = 4e-07
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAIT-QYIIQYKSSEEMWPTQPLKIIVPG 111
                AP ++++T++   S  + W         I   + IQY+     W  +  K     
Sbjct: 318 VNIQMAPPSLQVTKDGD-SYSLRWETMKMRYEHIDHTFEIQYRKDTATW--KDSKTETLQ 374

Query: 112 SQTSATLQPLLPATQYQVRLLA 133
           +  S  L  L P+T+Y  R+  
Sbjct: 375 NAHSMALPALEPSTRYWARVRV 396

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 30/214 (14%), Positives = 69/214 (32%), Gaps = 16/214 (7%)

Query: 45  EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQP 104
                         P+N+    + +  L  SW        +   + + YK S +      
Sbjct: 207 PEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVR-KEVASSVSFGLFYKPSPDAGSAVL 265

Query: 105 LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTS 164
           L+                  T++  ++   +P    +    +Q    E+    +     +
Sbjct: 266 LRE--EECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMA 323

Query: 165 DPGV---VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQY 221
            P +    D     ++W+   +  +  +   +++ Y+  + +         K+  L N +
Sbjct: 324 PPSLQVTKDGDSYSLRWE-TMKMRYEHIDHTFEIQYRKDTATW-----KDSKTETLQNAH 377

Query: 222 EGELRIPGLTPYTKYAIVVRGY--NSVGKGPFSE 253
              + +P L P T+Y   VR     +   G +SE
Sbjct: 378 S--MALPALEPSTRYWARVRVRTSRTGYNGIWSE 409

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 66.4 bits (161), Expect = 3e-13
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 7/126 (5%)

Query: 36  LATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGN--TAITQYIIQY 93
               +   A    +        AP ++++    +    ISW    + +      ++  + 
Sbjct: 86  EGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEART 145

Query: 94  KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM----SETGAELQAS 149
            S    W   PL + +   Q    L+ L P TQY+ ++  +   G     S     L   
Sbjct: 146 LSPGHTWEEAPL-LTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFR 204

Query: 150 TLEEAP 155
           T   A 
Sbjct: 205 TKPAAL 210

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 50.6 bits (120), Expect = 8e-08
 Identities = 32/202 (15%), Positives = 56/202 (27%), Gaps = 26/202 (12%)

Query: 75  SWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT---------LQPLLPAT 125
            W+    G    T   +        W       ++P SQ S            Q L    
Sbjct: 21  VWSQD--GALQDTSCQVHAWPDRRRWQQTC--ELLPVSQASWACNLILGAPDSQKLTTVD 76

Query: 126 QYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRES 185
              +R+L    +       +            AP  +      V+     I W+      
Sbjct: 77  IVTLRVLCREGVRWRVMAIQDFKPFENLRLM-APISLQVVH--VETHRCNISWEISQASH 133

Query: 186 WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS 245
           +    L ++              ++    +    Q +  + +  LTP T+Y   VR    
Sbjct: 134 YFERHLEFEARTLSPG------HTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPL 187

Query: 246 VGKG----PFSEPFIARTNEGD 263
            G+     P+S+P   RT    
Sbjct: 188 QGEFTTWSPWSQPLAFRTKPAA 209

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 66.5 bits (162), Expect = 1e-12
 Identities = 48/257 (18%), Positives = 81/257 (31%), Gaps = 39/257 (15%)

Query: 3   SRYTIREQVLEDG-MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP--EAP 59
            RY + + V  +G ++S L I +V   D G   C+A +  G AE + +L V   P     
Sbjct: 474 DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQM 533

Query: 60  KNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQ 119
           +   I    +  +    T P +G    +  I+  + +  +   +  K+   G+     ++
Sbjct: 534 EKKAIVAGETLIV----TCPVAGYPIDS--IVWERDNRALPINRKQKVFPNGTLIIENVE 587

Query: 120 PLLPATQYQVRLLAENPLGMSETG-AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKW 178
                  Y     A+N  G S  G  E+Q   L      A  E  +  G      L +  
Sbjct: 588 RNSDQATYTCV--AKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVG----QYLTLHC 641

Query: 179 KA-----PPRESW--NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT 231
                  P    W  +G  +  D+G   S                   +    L I  + 
Sbjct: 642 SVPGGDLPLNIDWTLDGQAISEDLGITTSR----------------VGRRGSVLTIEAVE 685

Query: 232 PYTKYAIVVRGYNSVGK 248
                       N  G 
Sbjct: 686 ASHAGNFTCHARNLAGH 702

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 59.6 bits (144), Expect = 3e-10
 Identities = 51/280 (18%), Positives = 84/280 (30%), Gaps = 69/280 (24%)

Query: 20  LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA---PKNIRITEESSRSLQISW 76
           L I + + +DSG   C+  N  G   +   L V     A   P    +           +
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRP----AVF 363

Query: 77  TAPYSGNTAITQYIIQ-YKSSEEMWPTQP-LKIIVPGSQTSATLQPLLPATQYQVRLLAE 134
           T  Y+GN   T   +   K  + +  ++  L+I     +             YQ      
Sbjct: 364 TCQYTGNPIKT---VSWMKDGKAIGHSESVLRIESVKKEDKG---------MYQCF--VR 409

Query: 135 NPLGMSETGAELQASTLEEAP--NGAPREVTSDPGVVDPTELLIKWKA----PPRESW-- 186
           N    +E  AEL+     + P    A +E T +PG      + +K  A     P  SW  
Sbjct: 410 NDRESAEASAELKLGGRFDPPVIRQAFQEETMEPG----PSVFLKCVAGGNPTPEISWEL 465

Query: 187 NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP-----YTKYAIVVR 241
           +G  +  +  YQ+               V ++      L I  +       Y        
Sbjct: 466 DGKKIANNDRYQVGQ------------YVTVNGDVVSYLNITSVHANDGGLYK-----CI 508

Query: 242 GYNSVG----------KGP--FSEPFIARTNEGDFLFLFC 269
             + VG           G     +        G+ L + C
Sbjct: 509 AKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTC 548

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 36/183 (19%), Positives = 54/183 (29%), Gaps = 29/183 (15%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDS-GTLSCLATNYHGTAE---MTIQLLVQETP-- 56
           + Y  +  VL  G   EL I  V  +D   +  C   +          T   LV   P  
Sbjct: 187 AEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 243

Query: 57  -EAPKNIRITEESSRSLQ----ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
              PK + + +   ++      ++   P  G          YK  E     Q + +    
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPV--FRWYKFIEGTTRKQAVVLNDRV 301

Query: 112 SQTSATLQPLLPATQ-----YQVRLLAENPLGMSETGAELQASTLEEAPN--GAPREVTS 164
            Q S TL  +  A       Y       N +G       L   T+    +    P   T 
Sbjct: 302 KQVSGTLI-IKDAVVEDSGKYLCV--VNNSVGGESVETVL---TVTAPLSAKIDPPTQTV 355

Query: 165 DPG 167
           D G
Sbjct: 356 DFG 358

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 63.7 bits (155), Expect = 9e-12
 Identities = 45/259 (17%), Positives = 85/259 (32%), Gaps = 54/259 (20%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRI 64
             ++      + L +  V + D+G  +C A+N  G    + QL VQE P   +  +  RI
Sbjct: 243 NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI 302

Query: 65  TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP- 123
            ++        +     G+  I   ++ YK   E+  +   ++    S     +  L   
Sbjct: 303 VKQDEH---TRYECKIGGSPEIK--VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 357

Query: 124 -ATQYQVRLLAENPLGMSETGAELQASTLEEAP--NGAPREVTSDPGVVDPTELLIKWKA 180
            +  Y     A N  G + +   L    ++E P     P  V +  G     ++ ++ + 
Sbjct: 358 DSGDYTCE--AHNAAGSASSSTSL---KVKEPPVFRKKPHPVETLKG----ADVHLECEL 408

Query: 181 ----PPRESW--NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP-- 232
               P + SW  +   L     Y+I                 +   +   + I  +    
Sbjct: 409 QGTPPFQVSWHKDKRELRSGKKYKI-----------------MSENFLTSIHILNVDSAD 451

Query: 233 ---YTKYAIVVRGYNSVGK 248
              Y   A      N VG 
Sbjct: 452 IGEYQCKAS-----NDVGS 465

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 10/143 (6%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRI 64
           + +++ +  ++ + I NV   D G   C A+N  G+      + ++  P   +   +I  
Sbjct: 430 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDIST 489

Query: 65  TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP-TQPLKIIVPGSQTSATLQPLLP 123
                  LQ    A   G   I+  +  +K   E+   +  + I    +  +       P
Sbjct: 490 VVGEEVQLQ----ATIEGAEPIS--VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP 543

Query: 124 ATQYQVRLLAENPLGMSETGAEL 146
           A   +     +N  G  E  A L
Sbjct: 544 ANAGKYTCQIKNEAGTQECFATL 566

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 36/180 (20%), Positives = 58/180 (32%), Gaps = 38/180 (21%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP------KN 61
             ++     ++ L I  V   D G  +C A N  G    +  L+++E    P      K+
Sbjct: 51  AYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKD 110

Query: 62  IRITEESSRSL----------QISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
           +  T     +           Q+SW                YK  E +     L+     
Sbjct: 111 VHETLGFPVAFECRINGSEPLQVSW----------------YKDGELLKDDANLQTSFIH 154

Query: 112 SQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAELQASTLEEAP--NGAPREVTSDPG 167
           +  +  +         QY     A NPLG + + A+L  S  E  P  +  P  V    G
Sbjct: 155 NVATLQILQTDQSHVGQYNCS--ASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALG 212

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 11/47 (23%), Positives = 17/47 (36%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
              +     I+ L  +     ++G  +C   N  GT E    L V E
Sbjct: 524 NIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 61.6 bits (149), Expect = 1e-11
 Identities = 29/205 (14%), Positives = 60/205 (29%), Gaps = 28/205 (13%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG-SQTSA 116
           AP+ + +   + + L + W+ P         Y ++Y+   E   T  + I     S T  
Sbjct: 9   APQQLSVLSTNMKHL-LMWS-PVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEG 66

Query: 117 T----LQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPR-EVTSDPGVVDP 171
                   +     Y +R+ A      S           +      P  E+T D      
Sbjct: 67  PECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFH--- 123

Query: 172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT 231
             L+I+ +    +        + V Y               + V++       + +  + 
Sbjct: 124 --LVIELEDLGPQ------FEFLVAYWRREPG-------AEEHVKMVRSGGIPVHLETME 168

Query: 232 PYTKYAIVVRGYNSV--GKGPFSEP 254
           P   Y +  + +         FS+ 
Sbjct: 169 PGAAYCVKAQTFVKAIGRYSAFSQT 193

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 62.1 bits (150), Expect = 3e-11
 Identities = 26/204 (12%), Positives = 54/204 (26%), Gaps = 22/204 (10%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
               +++     + + L  SW  P  G    T Y + Y         Q +  I    Q  
Sbjct: 137 ETXVQDMDCVYYNWQYLLCSWK-PGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNI 195

Query: 116 A---TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT 172
                         + + +   +      + +              P  +T         
Sbjct: 196 GCRFPYLEASDYKDFYICVNGSSENKPIRS-SYFTFQLQNIVKPLPPVYLTFTR--ESSC 252

Query: 173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP 232
           E+ +KW   P          Y++  +         ++    +VE +        +     
Sbjct: 253 EIKLKWS-IPLGPIPARCFDYEIEIREDD------TTLVTATVENET-----YTLKTTNE 300

Query: 233 YTKYAIVVRGYNSV---GKGPFSE 253
             +   VVR   ++     G +SE
Sbjct: 301 TRQLCFVVRSKVNIYCSDDGIWSE 324

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 56.3 bits (135), Expect = 2e-09
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 10/103 (9%)

Query: 32  TLSCLATNYHGTA---EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAIT- 87
            +    ++ +        T QL     P  P  +  T ESS  +++ W+ P     A   
Sbjct: 211 YICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCF 270

Query: 88  QYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR 130
            Y I+ +  +         +       + TL+      Q    
Sbjct: 271 DYEIEIREDDTTL------VTATVENETYTLKTTNETRQLCFV 307

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 50.6 bits (120), Expect = 2e-07
 Identities = 37/226 (16%), Positives = 63/226 (27%), Gaps = 18/226 (7%)

Query: 43  TAEMTIQLLVQETPEAPKNIRITEESSRS-LQISWTAPYS---GNTAITQYIIQYK-SSE 97
           T   T     +     P++  I +      L + W  P S         +Y ++Y+    
Sbjct: 19  TFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGS 78

Query: 98  EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM-SETGAELQASTLEEAPN 156
           E W     K I+  +        L    +  +  L        SE  +    +T   +P 
Sbjct: 79  ETW-----KTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQ 133

Query: 157 GAPREVTSDPGVV--DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKS 214
           G P     D   V  +   LL  WK         +   Y++ Y              +K+
Sbjct: 134 GIPETXVQDMDCVYYNWQYLLCSWKPGIG---VLLDTNYNLFYWYEGLDHALQCVDYIKA 190

Query: 215 VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTN 260
              +            + Y  + I V G +       S       N
Sbjct: 191 DGQNIGCR--FPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQN 234

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 60.4 bits (146), Expect = 3e-11
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)

Query: 45  EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAIT---QYIIQYKSSEEMWP 101
           + + +      P AP N+ +    S +L ++W+ PY  +  +     Y +   S  +   
Sbjct: 87  KGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPAD 146

Query: 102 TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM---SETGAELQASTLEEAP 155
            +   +             L     Y+ R+ A         SE     +       P
Sbjct: 147 FRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREP 203

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 30/183 (16%), Positives = 52/183 (28%), Gaps = 17/183 (9%)

Query: 75  SWTAPYSGNTAITQYIIQYKSSE---EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL 131
            W          T+  + Y+      E     P      G      +  ++ A  Y + L
Sbjct: 20  EWKMN-GPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDL 78

Query: 132 LAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP-PRESWNGVL 190
            A   L    +       +    P  AP  +T          LL+ W  P P +++    
Sbjct: 79  WAGQQLLWKGS----FKPSEHVKPR-APGNLTVHT--NVSDTLLLTWSNPYPPDNYLYNH 131

Query: 191 LGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
           L Y V     +  +     + + +V         +    L     Y   VR +       
Sbjct: 132 LTYAVNIWSENDPA----DFRIYNVTYLEPSL-RIAASTLKSGISYRARVRAWAQAYNTT 186

Query: 251 FSE 253
           +SE
Sbjct: 187 WSE 189

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 58.4 bits (141), Expect = 3e-11
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTL-SCLATNYHGTAEMTIQLLVQETP 56
            RYT+     E+G+IS L I+N++R D  T+ +C A N  G+    I+L  Q + 
Sbjct: 61  GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 57.9 bits (140), Expect = 4e-11
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 56  PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
             +  ++++ ++  R L+++W             Y +   + +E W            + 
Sbjct: 10  SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMV-------LEP 62

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
              L  L P T Y VR+    PLG      + +  T   + 
Sbjct: 63  RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPSG 103

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 55.2 bits (133), Expect = 4e-10
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 17/112 (15%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+  E+ +G   ++       +P +L + W      +  G L  Y++           +
Sbjct: 4   GSSGAESLSGLSLKLVK----KEPRQLELTWAGSRPRNPGGNL-SYELHVLNQDEEWHQM 58

Query: 208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
                            + +  L P T Y + VR    +G GPFS     RT
Sbjct: 59  VLEP------------RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 98

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 61.1 bits (147), Expect = 4e-11
 Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 20/223 (8%)

Query: 44  AEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQ 103
            E  I     +   A   ++    +   ++ SW       +  T Y + Y         Q
Sbjct: 86  VEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPG-RNTSPDTNYTLYYWHRSLEKIHQ 144

Query: 104 PLKIIVPGSQTS----ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP 159
              I   G         T        Q+ V+++ ++  G  +    +   T    P+  P
Sbjct: 145 CENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPD-PP 203

Query: 160 REVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSS-----LALSSYTLKS 214
                        +L ++W+ P   ++    L Y+V    S   +     +  +      
Sbjct: 204 HIKNLS---FHNDDLYVQWENPQ--NFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPE 258

Query: 215 VELDNQYEGELRIPGLTPYTKYAIVVR----GYNSVGKGPFSE 253
            E + +      +PG+ P T   + +R             +S 
Sbjct: 259 FERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSN 301

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 54.1 bits (129), Expect = 1e-08
 Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 14/112 (12%)

Query: 32  TLSCLATNYHGTA---EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQ 88
           ++  +  +  G        + L  +  P+ P    ++  +   L + W  P +  +    
Sbjct: 173 SVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHND-DLYVQWENPQNFISRCLF 231

Query: 89  YIIQYKSSEEMWPTQ----------PLKIIVPGSQTSATLQPLLPATQYQVR 130
           Y ++  +S+                P       + +   +  +LP T   VR
Sbjct: 232 YEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVR 283

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 26/209 (12%), Positives = 63/209 (30%), Gaps = 16/209 (7%)

Query: 54  ETPEAPKNIRITEESSRSLQISWTAPYSGNTAIT-QYIIQYKSSEEMWPTQPLKIIVPGS 112
           ET     N+ ++ E+  ++  +W  P   ++  +  Y   +   ++              
Sbjct: 2   ETQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPET------- 54

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETG-AELQASTLEEAPNGAPREVTSDPGVVDP 171
              +   PL      QV            +   E   S  E  P  A  E+       + 
Sbjct: 55  -RRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCI--WHNL 111

Query: 172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT 231
           + +   W      S +     Y + Y   S   +       +  +         ++   +
Sbjct: 112 SYMKCSWLPGRNTSPDT---NYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVK-DS 167

Query: 232 PYTKYAIVVRGYNSVGKGPFSEPFIARTN 260
            + ++++ +   ++ GK   S   +  T+
Sbjct: 168 SFEQHSVQIMVKDNAGKIKPSFNIVPLTS 196

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 60.1 bits (145), Expect = 6e-11
 Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 20/205 (9%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT- 114
              P+ +    E    L   W    S      QY   Y+  +E W    L          
Sbjct: 21  ARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGAV 80

Query: 115 ----SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVD 170
               S            ++R+ A +          +    L +AP G    +  + G   
Sbjct: 81  RFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESG--- 137

Query: 171 PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL 230
              ++++W  PP E+     + Y+V      G+       +++ VE+      E  +  L
Sbjct: 138 --HVVLRWL-PPPETPMTSHIRYEVDVSAGQGAG------SVQRVEILEG-RTECVLSNL 187

Query: 231 TPYTKYAIVVR--GYNSVGKGPFSE 253
              T+Y   VR         G +SE
Sbjct: 188 RGRTRYTFAVRARMAEPSFGGFWSE 212

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 26/149 (17%), Positives = 58/149 (38%), Gaps = 17/149 (11%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE------APKN 61
           + ++  DG    L +    ++D G  +C+ATN  G  E + +LL+Q TP+        + 
Sbjct: 53  KYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEK 112

Query: 62  IRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
                 S+    +     Y G       +  +   + +  ++ + I      T   ++ +
Sbjct: 113 YYGAVGST----LRLHVMYIGRPVPA--MTWFHGQKLLQNSENITIENTEHYTHLVMKNV 166

Query: 122 LPAT---QYQVRLLAENPLGMSETGAELQ 147
              T   +Y+V+    N  G  +   +++
Sbjct: 167 QRKTHAGKYKVQ--LSNVFGTVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 8   REQVLEDGMISELGIANVLRQ-DSGTLSCLATNYHGTAEMTIQLLVQE 54
              +      + L + NV R+  +G      +N  GT +  + + +Q+
Sbjct: 149 NITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196

>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens} Length = 219

 Score = 58.6 bits (141), Expect = 2e-10
 Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 18/142 (12%)

Query: 32  TLSCLATNYHGTAE---MTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAI-- 86
             S   T+  G       +  L     P  P ++ +T   S   QISW + Y        
Sbjct: 74  IFSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTVT--FSGQYQISWRSDYEDPAFYML 131

Query: 87  ---TQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP--LLPATQYQVRLLAENPLGMSE 141
               QY +QY++  + W   P + ++     S +L P      + Y++++ A    G S 
Sbjct: 132 KGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSY 191

Query: 142 TG------AELQASTLEEAPNG 157
            G        +   T  E    
Sbjct: 192 QGTWSEWSDPVIFQTQSEELKE 213

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 56.7 bits (136), Expect = 5e-10
 Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 43  TAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPT 102
            A   ++L     P AP+N+ + + S   L+++W   +  +    ++++QY++  +   T
Sbjct: 86  QATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHC--LEHLVQYRTDWDHSWT 143

Query: 103 QPLKIIVPGSQTSATLQPLLPATQYQVR 130
           +         +   +L  +    +Y  R
Sbjct: 144 E----QSVDYRHKFSLPSVDGQKRYTFR 167

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 27/198 (13%), Positives = 54/198 (27%), Gaps = 23/198 (11%)

Query: 71  SLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQ-PLKIIVPGSQTSATLQPLLPATQYQV 129
            +  +W +              YK+S+     +    +      +   LQ          
Sbjct: 14  YMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTF 73

Query: 130 RLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGV 189
            +  ++P        ++        P  AP  +T     +  ++L + W           
Sbjct: 74  VVQLQDPREPRRQATQMLKLQNLVIPW-APENLTLHK--LSESQLELNWNNRF----LNH 126

Query: 190 LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG 249
            L + V Y+     S           E    Y  +  +P +    +Y   VR   +   G
Sbjct: 127 CLEHLVQYRTDWDHS---------WTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCG 177

Query: 250 P------FSEPFIARTNE 261
                  +S P    +N 
Sbjct: 178 SAQHWSEWSHPIHWGSNT 195

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 57.5 bits (138), Expect = 5e-10
 Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 24/126 (19%)

Query: 24  NVLRQDSGTLSCLATNYHGTAEMTIQLLVQET------------------PEAPKNIRIT 65
           + L  +  T  C           T  + +Q+                   P AP+N+ + 
Sbjct: 87  HYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLH 146

Query: 66  EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPAT 125
           + S   L+++W   +  +    ++++QY++  +   T+         +   +L  +    
Sbjct: 147 KLSESQLELNWNNRFLNHC--LEHLVQYRTDWDHSWTE----QSVDYRHKFSLPSVDGQK 200

Query: 126 QYQVRL 131
           +Y  R+
Sbjct: 201 RYTFRV 206

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 51.0 bits (121), Expect = 8e-08
 Identities = 27/214 (12%), Positives = 57/214 (26%), Gaps = 23/214 (10%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGN-TAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
                 ++    +   +  +W +      T +T +     S  +        +      +
Sbjct: 37  TLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITS 96

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL 174
              LQ           +  ++P        ++        P  AP  +T     +  ++L
Sbjct: 97  GCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPW-APENLTLHK--LSESQL 153

Query: 175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
            + W            L + V Y+     S           E    Y  +  +P +    
Sbjct: 154 ELNWNNRF----LNHCLEHLVQYRTDWDHS---------WTEQSVDYRHKFSLPSVDGQK 200

Query: 235 KYAIVVRGYNSVGKGP------FSEPFIARTNEG 262
           +Y   VR   +   G       +S P    +N  
Sbjct: 201 RYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTS 234

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 33/154 (21%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRI 64
           + ++     ++ L + N+  +DSG  +C A N  G+A  +  L V+E P   + P  +  
Sbjct: 145 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVET 204

Query: 65  TEESSRSLQ----------ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
            + +   L+          +SW                +K   E+   +  KI+     T
Sbjct: 205 LKGADVHLECELQGTPPFQVSW----------------HKDKRELRSGKKYKIMSENFLT 248

Query: 115 SATLQPLLP--ATQYQVRLLAENPLGMSETGAEL 146
           S  +  +      +YQ +  A N +G       +
Sbjct: 249 SIHILNVDSADIGEYQCK--ASNDVGSYTCVGSI 280

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 17/167 (10%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRI 64
             ++      + L +  V + D+G  +C A+N  G    + QL VQE P   +  +  RI
Sbjct: 51  NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI 110

Query: 65  TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP- 123
            ++        +     G+  I   ++ YK   E+  +   ++    S     +  L   
Sbjct: 111 VKQDE---HTRYECKIGGSPEIK--VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 165

Query: 124 -ATQYQVRLLAENPLGMSETGAELQASTLEEAPN--GAPREVTSDPG 167
            +  Y     A N  G + +   L    ++E P     P  V +  G
Sbjct: 166 DSGDYTCE--AHNAAGSASSSTSL---KVKEPPVFRKKPHPVETLKG 207

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 51.3 bits (123), Expect = 8e-08
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
           + +++ +  ++ + I NV   D G   C A+N  G+      + ++
Sbjct: 238 KYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 36/157 (22%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP------KN 61
             Q+      ++L I  V + +SG  S  ATN  G A  T +LLV+     P      ++
Sbjct: 53  GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQS 112

Query: 62  IRITEESSRSL----------QISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
           + + + S   L           + +                Y+   E+  +   +I   G
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKF----------------YRDGAEIQSSLDFQISQEG 156

Query: 112 SQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAEL 146
              S  +    P  +  Y V   A N +G + + AEL
Sbjct: 157 DLYSLLIAEAYPEDSGTYSVN--ATNSVGRATSTAEL 191

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 20/46 (43%), Positives = 26/46 (56%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
             Q+ ++G +  L IA    +DSGT S  ATN  G A  T +LLVQ
Sbjct: 149 DFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R* Length = 211

 Score = 55.9 bits (134), Expect = 1e-09
 Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 15/208 (7%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-SSEEMWPTQPLKIIVPG 111
           ++  +  ++++    +  ++ ++W       T  T Y I+YK   E  W  +     +  
Sbjct: 2   EDPSDLLQHVKFQSSNFENI-LTWD-SGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITR 59

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP 171
              + T++       Y  R+ A +  G S T    + S+L+      P +VT    V   
Sbjct: 60  KSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPP-DVTCISKV--- 115

Query: 172 TELLIKWKAPPRESW--NGVLLGY-DVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP 228
             + +     P      +G  L   D+ + +     L ++      +    +   E    
Sbjct: 116 RSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQR---EYEFF 172

Query: 229 GLTPYTKYAIVVRGYNSV--GKGPFSEP 254
           GLTP T++   +         +      
Sbjct: 173 GLTPDTEFLGTIMILVPTWAKESAPYMC 200

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
             +V      S+L I    ++  G  + L  N  G+ +  + L V + P+ P
Sbjct: 53  HMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 104

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 54.9 bits (131), Expect = 5e-09
 Identities = 22/211 (10%), Positives = 60/211 (28%), Gaps = 10/211 (4%)

Query: 52  VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPT-QPLKIIVP 110
            ++    P  + +  E  +++ I  +     +       + +  S  +W     ++  + 
Sbjct: 97  FRKAQIGPPEVHLEAED-KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIE 155

Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLG--MSETGAELQASTLEEAPNGAPREVTSDPGV 168
              +   +  L P T Y +++ A       +          T  E     P  +      
Sbjct: 156 NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVS--- 212

Query: 169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP 228
           V     ++KW            + +   +   +  +  L  +       + +    +   
Sbjct: 213 VQNQNYVLKWDYTYAN--MTFQVQWLHAFLKRNPGN-HLYKWKQIPDCENVKTTQCVFPQ 269

Query: 229 GLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
            +     Y + V+  +      +SE     T
Sbjct: 270 NVFQKGIYLLRVQASDGNNTSFWSEEIKFDT 300

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 5/114 (4%)

Query: 45  EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQP 104
              I+  V+     P+NI ++ ++  +  + W   Y+  T   Q++  +           
Sbjct: 192 VHCIKTTVENELPPPENIEVSVQNQ-NYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYK 250

Query: 105 LKIIVPGSQTSAT----LQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA 154
            K I        T     Q +     Y +R+ A +    S    E++  T  +A
Sbjct: 251 WKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQA 304

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 52.2 bits (125), Expect = 5e-09
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 13/127 (10%)

Query: 42  GTAEMTIQLLVQETPEAPK-NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMW 100
           G++   +  L    P  P     +   S  ++ + W +      +I+ Y +QY       
Sbjct: 4   GSSGEGLDYL--TAPNPPSIREELCTASHDTITVHWISD--DEFSISSYELQYTIFTGQA 59

Query: 101 P-------TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
                        I+    Q   T+  L   T+Y   + A N  G   +    +  T  +
Sbjct: 60  NFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNS-EPTRLKTNSQ 118

Query: 154 APNGAPR 160
                P 
Sbjct: 119 PFKSGPS 125

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 140 SETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQI 199
             +G  L   T    P+      T          + + W +         +  Y++ Y I
Sbjct: 4   GSSGEGLDYLTAPNPPSIREELCT-----ASHDTITVHWISDD----EFSISSYELQYTI 54

Query: 200 SSGSSLALSSYTLKS--VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
            +G +  +S Y      + + N  +    + GL   T+Y  +V+  N  G    SEP   
Sbjct: 55  FTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAG-SRNSEPTRL 113

Query: 258 RTNEGDF 264
           +TN   F
Sbjct: 114 KTNSQPF 120

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 28/192 (14%), Positives = 54/192 (28%), Gaps = 42/192 (21%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP------ 56
            R    +   +      L + +V+  D G  +C+  N  G+   T  L V E        
Sbjct: 60  HRIGGIKLRHQQW---SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPIL 116

Query: 57  --EAPKNIRITEESSRSLQ----------ISWT-------APYSGNTAITQYIIQYKSSE 97
               P N      S               I W        +    +      +++   SE
Sbjct: 117 QAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISE 176

Query: 98  EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNG 157
            +     L++       + + +      +Y     A N +G++E    L   ++      
Sbjct: 177 SVEADVRLRL------ANVSER---DGGEYLC--RATNFIGVAEKAFWL---SVHGPRAA 222

Query: 158 APREVTSDPGVV 169
               V +D    
Sbjct: 223 EEELVEADEAGS 234

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 53.8 bits (128), Expect = 1e-08
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWT 77
           S L + N    D   L         T  +      +      ++ + +E + +++ ++WT
Sbjct: 113 SNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWT 172

Query: 78  APYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL 137
            P      +  YI+ YK  +++         +   +TS T + L   T Y  ++ A+   
Sbjct: 173 EP-ETTEGLEGYIL-YKDGKKVA-------EIGKDETSYTFKKLNRHTIYNFKIAAKYSN 223

Query: 138 GMSETGAELQAST 150
           G   +   L   T
Sbjct: 224 GEVSSKESLTLRT 236

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
           R QV      S   I++V   D G  S +  N  G  E    L +Q+
Sbjct: 60  RHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 22/155 (14%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP------ 56
            +Y I+E     G   +L IA+V   D+      ATN  G+   T  L V+         
Sbjct: 50  LKYRIQE---FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPK 106

Query: 57  --EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
             E    +        S+      P+SG       I   K  + +      ++IV  S T
Sbjct: 107 TLEGMGAVHALRGEVVSI----KIPFSGKPDPV--ITWQKGQDLIDNNGHYQVIVTRSFT 160

Query: 115 SATLQPLLPAT---QYQVRLLAENPLGMSETGAEL 146
           S      +       Y V   A+N  G+ +   EL
Sbjct: 161 SLVFPNGVERKDAGFYVVC--AKNRFGIDQKTVEL 193

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
             Y +          S +    V R+D+G     A N  G  + T++L V +
Sbjct: 149 GHYQVIV---TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 13/106 (12%)

Query: 56  PEAPKNIRIT--EESSRSLQISWTAPYSGNTA---ITQYIIQYK-SSEEMWPTQPLKIIV 109
           P+ P+N+       + R L+++W  P +         ++ ++Y+    + W     + + 
Sbjct: 8   PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQW-----QHVE 62

Query: 110 PGSQTSATLQPLLPATQYQVRLLAENPLG--MSETGAELQASTLEE 153
             + T+ T+       +Y +++ A++      S+      A+   E
Sbjct: 63  LSNGTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTE 108

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P AP N+  T +++ S+ +SWTA  + N  +T Y + Y  +               + T+
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTAS-TDNVGVTGYDV-YNGTALATTV---------TGTT 52

Query: 116 ATLQPLLPATQYQVRLLAENPLG-MSETGAELQAST 150
           AT+  L   T Y   + A++  G +S     +   T
Sbjct: 53  ATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 51.4 bits (122), Expect = 5e-08
 Identities = 27/232 (11%), Positives = 66/232 (28%), Gaps = 19/232 (8%)

Query: 30  SGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAI-TQ 88
           S   + + +    + +     L   +   PK  +       +    WT      T     
Sbjct: 4   SEATAAILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGP 63

Query: 89  YIIQY-----KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETG 143
             + Y     +   + W   P  +    +           A  Y ++L +       +  
Sbjct: 64  IQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCF 123

Query: 144 AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNG--VLLGYDVGYQISS 201
             +      + P      + +        ++ ++W+AP         ++L Y++ Y+  +
Sbjct: 124 -SVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVN 182

Query: 202 GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
                 + + +    L         +  L    +Y + VR       G + E
Sbjct: 183 E-----TKWKMMDPILTTSVP----VYSLKVDKEYEVRVRS-KQRNSGNYGE 224

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 10/46 (21%), Positives = 16/46 (34%)

Query: 8  REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
             V      + +   +  R DSG       N  G  E   +++VQ
Sbjct: 48 ELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 51.8 bits (123), Expect = 6e-08
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 11/99 (11%)

Query: 37  ATNYHGTAE---MTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAIT-QYIIQ 92
            ++ H           L   +    P N+    E +  + I W  P S        Y ++
Sbjct: 199 GSSKHSAIRPFDQLFALHAIDQINPPLNVTAEIEGT-RMSIQWEKPVSAFPIHCFDYEVK 257

Query: 93  YKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL 131
             ++   +        +    T+A +  +   ++Y V++
Sbjct: 258 IHNTRNGYLQ------IEKLMTNAFISIIDDLSKYDVQV 290

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 34/204 (16%), Positives = 61/204 (29%), Gaps = 21/204 (10%)

Query: 42  GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP 101
           G+   +I  L   T     N         SL  +W    +     TQY + Y+       
Sbjct: 105 GSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVG-TDAPEDTQYFLYYRYGSWTEE 163

Query: 102 TQPLKIIVPGSQTSATLQPLLPAT----QYQVRLLAENPLGMSETGAELQASTLEEAPNG 157
            Q   +   G   +         +       V +   +         +L A    +  N 
Sbjct: 164 CQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQIN- 222

Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
            P  VT++      T + I+W+  P  ++      Y+V    +           L+  +L
Sbjct: 223 PPLNVTAEIE---GTRMSIQWE-KPVSAFPIHCFDYEVKIHNTRNG-------YLQIEKL 271

Query: 218 DNQYEGELRIPGLTPYTKYAIVVR 241
                    I  +   +KY + VR
Sbjct: 272 MTNA----FISIIDDLSKYDVQVR 291

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 39.9 bits (92), Expect = 6e-04
 Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 11/133 (8%)

Query: 55  TPEAPKNIRITEESSRSLQISWTAPYSG--NTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
           +   P N  I       + + W             +Y ++  + +E              
Sbjct: 11  SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYE-------TRI 63

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT 172
             S  +  L       VR + +N    S   +   ++ L   P      + +     + T
Sbjct: 64  TESKAVTILHMGFSASVRTILQN--DHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTT 121

Query: 173 ELLIKWKAPPRES 185
           E         + S
Sbjct: 122 EDNYSRLRSYQVS 134

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 6   TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
             +  V E+G+ S L I  V  +D+G  +C+ATN  G    +++L+V      P
Sbjct: 55  AHKMLVRENGVHS-LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 23/187 (12%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITE----ESSRSLQ 73
             L ++ +  QDSGT +C         E  I ++V    +A   +   E    E S  L 
Sbjct: 142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLA 201

Query: 74  ISWTAPY---------SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPA 124
            +                 ++   +I     ++E+   +  +           L   LP 
Sbjct: 202 FTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQ 261

Query: 125 TQYQVR------LLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKW 178
              Q        L  E   G       L      +       EV          +L++  
Sbjct: 262 ALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPT----SPKLMLSL 317

Query: 179 KAPPRES 185
           K   +E+
Sbjct: 318 KLENKEA 324

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 22/170 (12%), Positives = 51/170 (30%), Gaps = 14/170 (8%)

Query: 12  LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRS 71
            +DG I  L I    ++D+G    +  +  G  +  ++L+ +   E    +      S +
Sbjct: 56  FKDG-ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSAT 114

Query: 72  LQISWTAPYSGNTAITQYIIQ--------YKSSEEMWPTQPLKIIVPGSQTSATLQPLLP 123
             +   +   G    +               +   +  +  +K  V G Q    +    P
Sbjct: 115 -DLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTP 173

Query: 124 --ATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP 171
               +Y +     +     +   +L     +EA     R   +     + 
Sbjct: 174 NDKGKYVME--LFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 221

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
               ++    E G  +   I  V   DSG    +  N +G+      + V   PE
Sbjct: 267 DHCNLKF---EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI-PE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 11/62 (17%), Positives = 20/62 (32%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEE 67
           R +    G    L I      D G       +     + T+ L  Q   EA    +  ++
Sbjct: 154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 213

Query: 68  SS 69
           ++
Sbjct: 214 AA 215

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 22/152 (14%)

Query: 6   TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRIT 65
              ++ L++G    +      +   G     A N          L ++  P+      + 
Sbjct: 368 PCEQKGLDNG--YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV-----LA 420

Query: 66  EESSRSLQ----------ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           E S+               +W      +   T+ I     +E +W  +  + +     +S
Sbjct: 421 EASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEI-----TEGVWNRKANRKVFGQWVSS 475

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQ 147
           +TL        + V+  A N LG S     L 
Sbjct: 476 STLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 7/78 (8%), Positives = 22/78 (28%), Gaps = 12/78 (15%)

Query: 12  LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA--PKNIRITEESS 69
           L++  +  + I  +    +G       +      +   + ++ T      +      E+ 
Sbjct: 97  LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQ 156

Query: 70  RSL----------QISWT 77
            +L           + W 
Sbjct: 157 DALVCISESVPEPIVEWV 174

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
            R ++ +     G ++ L I +V ++D+G  +  A N  G      +L V   P 
Sbjct: 61  DRISLYQD--NTGRVT-LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
             YTI+     DG  S L        D G  + +A N  G    T +L+VQ     P
Sbjct: 54  DHYTIQRD--LDGTCS-LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 13/101 (12%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 37  ATNYHGTAEMTIQLLVQET---PEAPKNIRIT-EESSRSLQISWTAPYSGNTAIT--QYI 90
                G   +T + +   T   PEAP ++ +   E +    +++   +     +    + 
Sbjct: 91  ICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHD 150

Query: 91  IQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL 131
           + Y+  ++      +   +  ++ +   + L PA  Y++++
Sbjct: 151 VAYRQEKDENKWTHVN--LSSTKLTLLQRKLQPAAMYEIKV 189

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 30/135 (22%), Positives = 44/135 (32%), Gaps = 14/135 (10%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRITEESSRSLQI 74
             L I NV  +DSG   CLA+N  G+   TI + V+  P   + PKN+ +          
Sbjct: 275 KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGED----G 330

Query: 75  SWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP--ATQYQVRLL 132
                 +GN   T  +    + E +    P         T    +         YQ    
Sbjct: 331 RLVCRANGNPKPT--VQWMVNGEPLQSAPPNPNREVAGDT-IIFRDTQISSRAVYQCN-- 385

Query: 133 AENPLGMSETGAELQ 147
             N  G     A + 
Sbjct: 386 TSNEHGYLLANAFVS 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 5/37 (13%), Positives = 10/37 (27%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
             +   +          C  +N HG       + V +
Sbjct: 367 DTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 29/179 (16%), Positives = 47/179 (26%), Gaps = 31/179 (17%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP------ 56
            R    +   +      L + +V+  D G  +C+  N +G+   T  L V E        
Sbjct: 64  HRIGGYKVRNQHW---SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPIL 120

Query: 57  --EAPKNIRITEESSRSLQ----------ISWTAPYSGNTAITQYIIQYKSSEEMWPTQP 104
               P N                      I W      N +                   
Sbjct: 121 QAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG-----PDGLPYLKVLK 175

Query: 105 LKIIVPGSQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPRE 161
              I   +     L  +    A +Y       N +G +   A L     ++AP G  +E
Sbjct: 176 HSGINSSNAEVLALFNVTEADAGEYIC--KVSNYIGQANQSAWLTVLPKQQAP-GREKE 231

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 39/239 (16%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE--APKNIRIT 65
           +  ++E    +   +       S    C A N  G  E  I   V   PE     +++ T
Sbjct: 503 QFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPT 562

Query: 66  EESSRSL----------QISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLK----IIVPG 111
           E+ S SL           ++W     G   +  ++ +  +          K    +    
Sbjct: 563 EQESVSLWCTADRSTFENLTWY--KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNS 620

Query: 112 SQTSATLQPLLPAT-----QYQVRLLAENPLGMSETGAELQASTLEEAP---NGAPREVT 163
           +     ++ L  A+      Y     A++           Q + LE       G     T
Sbjct: 621 TNDILIME-LKNASLQDQGDYVCL--AQDRKTKKRHCVVRQLTVLERVAPTITGNLENQT 677

Query: 164 SDPGVVDPTELLIKWKA--PPRESW--NGVLLGYDVGYQISSGSSLALSSYTLKSVELD 218
           +  G  +  E+        PP+  W  +   L  D G  +  G+     + T++ V  +
Sbjct: 678 TSIG--ESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN----RNLTIRRVRKE 730

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 50.5 bits (120), Expect = 3e-07
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
             L I  V ++D G  +C A +  G A++    +++   E   
Sbjct: 720 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 762

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 31/238 (13%), Positives = 68/238 (28%), Gaps = 33/238 (13%)

Query: 7   IREQVLEDGM-ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP------EAP 59
           +      DG+    L I  V+  D+G   C        + + + +    +P      +  
Sbjct: 74  VEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQH 133

Query: 60  KNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT----S 115
             + ITE  ++++ I      S         +  +  E+ +     +I     +     S
Sbjct: 134 GVVYITENKNKTVVIPCLGSISN----LNVSLCARYPEKRFVPDGNRISWDSKKGFTIPS 189

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN---GAPREVTSDPG----- 167
             +     A        A+      ++   +         +        +    G     
Sbjct: 190 YMIS---YAGMVFCE--AKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 244

Query: 168 -----VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQ 220
                      +   W+ P  +  +  L+  D+  Q  S     LS+ T+  V   +Q
Sbjct: 245 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 302

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 11/158 (6%)

Query: 4   RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR 63
           +            I  + + N   QD G   CLA +        +   +         I 
Sbjct: 611 KLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTIT 670

Query: 64  ITEES---SRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP 120
              E+   S    I  +   SGN      I+ +K +E +       I++     + T++ 
Sbjct: 671 GNLENQTTSIGESIEVSCTASGNPPPQ--IMWFKDNETLVEDS--GIVLKDGNRNLTIRR 726

Query: 121 LLP--ATQYQVRLLAENPLGMSETGAELQASTLEEAPN 156
           +       Y  +  A + LG ++  A       +E  N
Sbjct: 727 VRKEDEGLYTCQ--ACSVLGCAKVEAFFIIEGAQEKTN 762

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 17  ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
           +S L I  V R D G  +C A++   T + +  + V E P   
Sbjct: 289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVA 331

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 29/206 (14%), Positives = 64/206 (31%), Gaps = 23/206 (11%)

Query: 22  IANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSR-----SLQISW 76
           I + +   +G + C A     + +  + ++V         +              L ++ 
Sbjct: 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 246

Query: 77  TAPYSGNTAITQY----IIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPAT-----QY 127
           TA    N  I         +++  + +      +      +  +TL  +   T      Y
Sbjct: 247 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT-IDGVTRSDQGLY 305

Query: 128 QVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKA--PPRES 185
                A + L   +    ++         G+  E   +  V +   +  K+    PP   
Sbjct: 306 TCA--ASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIK 363

Query: 186 W--NGVLLGYDVGYQISSGSSLALSS 209
           W  NG+ L  +  + I +G  L +  
Sbjct: 364 WYKNGIPL--ESNHTIKAGHVLTIME 387

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 4   RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
                 + +  G    L +      ++G  + LA N  G A  +I     + P
Sbjct: 298 LEPAANETVRHG---CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
             + I     E+G  S L I+ V   D    +C A N  G A  T +LLV+   +  +  
Sbjct: 86  RHFQIDYD--EEGNCS-LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGE 142

Query: 63  RITEESSR 70
              EE   
Sbjct: 143 GEGEEDEE 150

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 10/49 (20%), Positives = 15/49 (30%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
           R  V      +   +    R DSG         +     TI++ V E  
Sbjct: 69  RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 11  VLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
           VL+DG    L I  V ++D G  +C A +  G A++    +++   E   
Sbjct: 58  VLKDG-NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 11/64 (17%), Positives = 19/64 (29%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
               +      +     L        ++G  + +A N  GTA  TI     + P     +
Sbjct: 50  KIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEV 109

Query: 63  RITE 66
             T 
Sbjct: 110 SPTP 113

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 10/59 (16%), Positives = 16/59 (27%)

Query: 4   RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
           +     +        E+ I       +G   C  T        +  L V E+     NI
Sbjct: 61  QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 119

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
           R + LE+G+   L I      D+G  +C+A+   G A  +  + VQE  
Sbjct: 55  RIKQLENGV---LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFG 100

>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 46.7 bits (110), Expect = 6e-07
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 21/129 (16%)

Query: 140 SETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAP---PRESWNGVLL-GYDV 195
           S   + ++ STL   P   P++VT   GV  P  + + W+ P   P    NG  + GY V
Sbjct: 2   SSGSSGVEFSTLPAGPPAPPQDVTVQAGV-TPATIRVSWRPPVLTPTGLSNGANVTGYGV 60

Query: 196 ---GYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS 252
              G +++        S  +              +  L       + VR  ++ G+   S
Sbjct: 61  YAKGQRVAEVIFPTADSTAV-------------ELVRLRSLEAKGVTVRTLSAQGESVDS 107

Query: 253 EPFIARTNE 261
                    
Sbjct: 108 AVAAVPPEL 116

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 8  REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQET 55
          R  + E G    L I N+   D+GT +C+AT+  G    +  L V E+
Sbjct: 55 RATIQEQGT---LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 3   SRYTIR-EQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
                +            L + N    ++G  + +A N +G  E  I       P
Sbjct: 46  KYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 48.4 bits (115), Expect = 8e-07
 Identities = 21/162 (12%), Positives = 47/162 (29%), Gaps = 24/162 (14%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
            +Y +   +  +  I E+ +  +  +D GT +    +   T   T+ L+     +  K  
Sbjct: 153 PKYKMH--IDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 210

Query: 63  RITEESSRSLQISWTAPYSGNTAITQYIIQ----------------YKSSEEMWPTQPLK 106
               +     Q      Y       +  +                 YK   E+   +  K
Sbjct: 211 EFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE--K 268

Query: 107 IIVPGSQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAEL 146
                   +  +       A  Y+V    ++  G  ++  +L
Sbjct: 269 HDFKDGICTLLITEFSKKDAGIYEVI--LKDDRGKDKSRLKL 308

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 22/182 (12%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA--------EMTIQLLVQETPEAP 59
           R +V   G  +++   ++   D G  SC  T+  G A        E+   L +    + P
Sbjct: 48  RLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFP 107

Query: 60  KNIRITEESSRSLQ----ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
                +E +   L+      W      +      +    + +E++     K+ +  +   
Sbjct: 108 TVPVKSELAVEILEKGQVRFWMQAEKLSGNAK--VNYIFNEKEIFEGPKYKMHIDRNTGI 165

Query: 116 ATLQPLLPAT-----QYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVD 170
             +  +          Y  +   ++    + +   L     ++    A  +         
Sbjct: 166 IEMF-MEKLQDEDEGTYTFQ--LQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG 222

Query: 171 PT 172
           P 
Sbjct: 223 PH 224

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 39.2 bits (91), Expect = 9e-04
 Identities = 6/51 (11%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
            ++  ++ +        L I    ++D+G    +  +  G  +  ++L+ +
Sbjct: 267 EKHDFKDGI------CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 45.4 bits (108), Expect = 8e-07
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 3  SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
           +Y I     EDG+   L + ++ + D GT  C   N +G      +L V+   E
Sbjct: 47 EKYEITY---EDGVAI-LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 14/84 (16%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQETP---EAPKNIR 63
           R  V ++G+ S L I N   +D+G   C AT+  G   E T+ L + +     E      
Sbjct: 50  RVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQE 109

Query: 64  ITEESSRSL----------QISWT 77
             +     +           +SW 
Sbjct: 110 FKQGEDAEVVCRVSSSPAPAVSWL 133

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
           +  +      +EL + N++  D G   C ATN  G  E    L V        +
Sbjct: 240 KYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHHH 291

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 42/159 (26%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLVQETP------EAPK 60
           R  +L +     L I N+ + D G   C       G  +    +++   P      +   
Sbjct: 146 RFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSF 202

Query: 61  NIRITEESSRSLQ----------ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVP 110
           N         +            ISW                +++ + +   +  K I+ 
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISW----------------FRNGKLIEENE--KYILK 244

Query: 111 GSQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAELQ 147
           GS T  T++ ++      Y  R  A N  G  E  A LQ
Sbjct: 245 GSNTELTVRNIINSDGGPYVCR--ATNKAGEDEKQAFLQ 281

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 2   FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPEAPK 60
            S    R + L    I  L I      D G   C+ATN  GT       L V+ T     
Sbjct: 151 TSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHHH 210

Query: 61  N 61
           +
Sbjct: 211 H 211

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 8   REQVLEDGMISELGIANV-LRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
                +DG  S L I  +   +D     C+A+N  G   ++ +L V    + P+
Sbjct: 53  EVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR 106

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 8  REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
          + ++ ED     L I      DSG  +C   N  G+   + +L ++
Sbjct: 52 KYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
               ++    E G  +   I  V   DSG    +  N +G+      + V   PE
Sbjct: 162 DHCNLKF---EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI-PE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 11/62 (17%), Positives = 20/62 (32%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEE 67
           R +    G    L I      D G       +     + T+ L  Q   EA    +  ++
Sbjct: 49  RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 108

Query: 68  SS 69
           ++
Sbjct: 109 AA 110

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 16/84 (19%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQETPE---APKNIR 63
           R  + E+G    L I +V   D G   C A N  G A E    L V+  P+    P N++
Sbjct: 54  RYSIRENG--QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVK 111

Query: 64  ITEESSRSLQ----------ISWT 77
           I E     L           +SW 
Sbjct: 112 IIEGLKAVLPCTTMGNPKPSVSWI 135

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQ 53
           R  VLE G    L I NV ++D+G   C+A N  GTA    ++L V+
Sbjct: 146 RIAVLESGS---LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 8  REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
          R     +G +  L I    R D+G  +C A N +G  +   +L V+
Sbjct: 52 RFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 17/133 (12%)

Query: 20  LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSLQISW 76
           L I N  ++D+G+  C+A N  G      QL     P       +I +  E S    + W
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEES----VFW 315

Query: 77  TAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP--ATQYQVRLLAE 134
               +G    T      K+ + +     ++I     Q +  +  +    A  YQ    AE
Sbjct: 316 ECKANGRPKPT--YRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCV--AE 367

Query: 135 NPLGMSETGAELQ 147
           N  G+  + AEL 
Sbjct: 368 NKHGVIFSSAELS 380

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 17/89 (19%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQETP---EA 58
            R ++     +      L I N    D+G   C+ T   GT  E T+ + + +      A
Sbjct: 50  QRISVVWNDDDSST---LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA 106

Query: 59  PKNIRITEESSRSLQ----------ISWT 77
           P      E     +           I W 
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 19/145 (13%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRI 64
           +  +L       L I+NV   DSGT +C+ T  +     + +L V   P     P N+  
Sbjct: 268 KYSLLGGS---NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYA 324

Query: 65  TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP- 123
            E       I +    SG    T  +   K+ + + P+   +I+      +  +  ++  
Sbjct: 325 YESMD----IEFECAVSGKPVPT--VNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKS 375

Query: 124 -ATQYQVRLLAENPLGMSETGAELQ 147
               YQ    AEN  G +++ A+L 
Sbjct: 376 DEGFYQCV--AENEAGNAQSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
             Q++       L I  V++ D G   C+A N  G A+ + QL+V +
Sbjct: 358 YFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 39/226 (17%), Positives = 64/226 (28%), Gaps = 48/226 (21%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP---------E 57
           R  VL  G    L I+ +   DSG   C A N   T      ++ +   P         +
Sbjct: 170 RVVVLPSG---ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQ 226

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
            P N+   E              SG    +      +  E +        ++ GS     
Sbjct: 227 RPSNVIAIEGKD----AVLECCVSGYPPPS--FTWLRGEEVIQLRSKKYSLLGGS----N 276

Query: 118 LQPLLPATQ------YQVRLLAENPLGMSETGAELQASTLEEAPN--GAPREVTSDPGVV 169
           L   +          Y                AEL   T+   P     P  + +     
Sbjct: 277 LL--ISNVTDDDSGTYTCV--VTYKNENISASAEL---TVLVPPWFLNHPSNLYAYES-- 327

Query: 170 DPTELLIKWKA----PPRESW--NGVLLGYDVGYQISSGSSLALSS 209
              ++  +        P  +W  NG ++     +QI  GS+L +  
Sbjct: 328 --MDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILG 371

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 3  SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
          S+          G+++ L I +    DSGT   + TNY G A     L V 
Sbjct: 53 SKIHYTN---TSGVLT-LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 4   RYTIREQVLEDG-MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
             T+       G ++ +  I +   + +GT+ C A N  G          +   +
Sbjct: 459 VQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNK 513

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE------TPEAPKNIRITEESSRS 71
           + L I++    DSG   C A N  G+A +T  L V +       P     + + +  +  
Sbjct: 273 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD 332

Query: 72  LQ 73
           L 
Sbjct: 333 LI 334

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
             Y   E       +SEL +  +   + GT + L +N    A +   + V   PE
Sbjct: 360 EDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPE 414

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
           S L I  V R D G  +C A++   T + +  + V E P
Sbjct: 74  STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
             L +  V  QD+G  SC+A+N  GT   T+   V E+ 
Sbjct: 245 RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 4/56 (7%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP----EAPKNIRITEESS 69
           S L   N   +++GT  C           TI L V++         + + + E   
Sbjct: 51  STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQE 106

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 20  LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRITEESS 69
           L I NV  +D GT  C A N  G      ++++   P   +   +      S 
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSD 311

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
            EL  + ++ +DSG   C+A N HGT   + +L VQ
Sbjct: 346 GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 26/147 (17%), Positives = 38/147 (25%), Gaps = 25/147 (17%)

Query: 20  LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP--------EAPKNIRITEESSRS 71
           L + +V+  D G  +C+  N  G+   T  L V E            P N      S   
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVE 241

Query: 72  LQ----------ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
                       I W             +    +                     +L  +
Sbjct: 242 FHCKVYSDAQPHIQW---LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298

Query: 122 LP--ATQYQVRLLAENPLGMSETGAEL 146
               A +Y    LA N +G S   A L
Sbjct: 299 TFEDAGEYTC--LAGNSIGFSHHSAWL 323

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 14  DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
           D  +  L + NV  +D+G  +CLA N  G +  +  L+V    E
Sbjct: 287 DKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE 330

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 7   IREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP---EAPKNI 62
           +   V E   I  L + +V R D+G   C   +   T     + L V+  P     PK++
Sbjct: 49  LYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDL 108

Query: 63  RITEESSRSLQ 73
            +   +   L 
Sbjct: 109 AVPPNAPFQLS 119

>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens} Length = 104

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 8/98 (8%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
                ++     S+ SL + W    + +++   Y I      +          +  S+  
Sbjct: 8   AIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSN-------LNVSEPR 60

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
           A +  L  +T Y + +           G  LQ  T   
Sbjct: 61  AVIPGLRSSTFYNITVCPVLGDIEGTPG-FLQVHTPPV 97

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 13  EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
               +  L +  V  Q +G  SC+A+N  G    ++   V E+ 
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 4/66 (6%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP----EAPKNIR 63
              +  DG  S L   N   Q++GT  C            I L V++         + + 
Sbjct: 41  HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVV 100

Query: 64  ITEESS 69
           + E+  
Sbjct: 101 VFEDQD 106

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 45.2 bits (106), Expect = 5e-06
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
           S L I  V R D G  +C A++   T + +  + V E P
Sbjct: 171 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209

>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 98

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 57  EAPKNIRITEESSR--SLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
             P  + ITE  S+  S  I W AP   +  I++YI++++        +  +  +PG   
Sbjct: 6   SGPVEVFITETPSQPNSHPIQWNAPQPSH--ISKYILRWRPKNS--VGRWKEATIPGHLN 61

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSET 142
           S T++ L P   Y+ +L++    G  E 
Sbjct: 62  SYTIKGLKPGVVYEGQLISIQQYGHQEV 89

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 45.0 bits (106), Expect = 6e-06
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA 58
             L ++ +  QDSGT +C         E  I ++V    +A
Sbjct: 143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 8/97 (8%)

Query: 55  TPEAPKNIRITEESS-RSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
            P  P  +    +SS  +  ++W A          Y ++  +      T    I    + 
Sbjct: 4   APAFPTGLSAVLDSSGNTANLTWNAA----PGANSYNVKRSTKSGGPYTT---IATNITS 56

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
           T+ T   +   T+Y   + A +    +   AE     
Sbjct: 57  TNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRIT 65
               + +G    L    V  +D G  +C A        ++++L V        +  + 
Sbjct: 294 GSVSVRNGD---LFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLN 348

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
             Y +R  VL DG    L   NV  QD+G  +C+ +N  G    +  L V  T 
Sbjct: 385 GAYKVRIAVLSDGT---LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 42.9 bits (101), Expect = 6e-06
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 8  REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
             +  +G    L I NV   D+GT  C  +N     + T  L VQ
Sbjct: 55 SRAMDFNG---ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
           R  VL DG    L  ++VL  D+G  +C+ TN  G +  +  L V    
Sbjct: 400 RISVLNDGT---LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 3  SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE-APKN 61
          +R  I  + +E        + + +  DSG  +C+ ++  G+      + V +     P +
Sbjct: 47 NRTRITGEEVE--------VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSS 98

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 6/56 (10%), Positives = 16/56 (28%), Gaps = 2/56 (3%)

Query: 6   TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
              ++ L++G    +      +   G     A N          L ++   +   +
Sbjct: 368 PCEQKGLDNG--YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHH 421

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 5/55 (9%), Positives = 14/55 (25%), Gaps = 3/55 (5%)

Query: 17  ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP---EAPKNIRITEES 68
           +  + I  +    +G       +      +   + ++ T          R  E  
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQ 156

>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor complex, immune system; 2.52A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R Length = 214

 Score = 44.7 bits (105), Expect = 8e-06
 Identities = 26/204 (12%), Positives = 64/204 (31%), Gaps = 17/204 (8%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM-WPTQPLKIIVPGSQTSA 116
           +P ++    E    + + WT P    +  T Y +         W +            +A
Sbjct: 7   SPPSVWFEAEFFHHI-LHWT-PIPQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTA 64

Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLI 176
               L  +  Y+ R+ A +    S+        +++E               +    +L 
Sbjct: 65  VTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLE----IHNGFILG 120

Query: 177 KWKAPPRESWNGVLLGYDVGYQISSGSSLAL----SSYTLKSVELDNQYEGELRIPGLTP 232
           K +  PR         Y+  +       +A+      +T    ++ ++   +  +     
Sbjct: 121 KIQ-LPRPKMAPAQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHE---QFSLLTSGE 176

Query: 233 YTKYAIVVRGY--NSVGKGPFSEP 254
             ++ + V+    +   KG +S+ 
Sbjct: 177 VGEFCVQVKPSVASRSNKGMWSKE 200

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 20  LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK---NIRITEESSRS 71
           L +      ++G  + LA N  G A  +I     + P        I  T  +S  
Sbjct: 65  LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGD 119

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPEAPKNIR 63
           R ++++ G    L I+NV   D G   C+A N  GT E    +L+VQ    A  +  
Sbjct: 163 RVRIVDGG---NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 8   REQVLEDGMISELGIANV-LRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
           R  ++     +EL I N+ + +D G   C ATN  G+A ++  L V+
Sbjct: 143 RFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 14/73 (19%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSL-- 72
            E  I     +DSG   C+        +    + V+  P+     ++    E     +  
Sbjct: 56  MEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYC 114

Query: 73  --------QISWT 77
                   +  W 
Sbjct: 115 KSVGYPHPEWMWR 127

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
          ++EL I + L +D GT +CLA N  G    +  + V 
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 10/106 (9%), Positives = 23/106 (21%), Gaps = 20/106 (18%)

Query: 4   RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APK 60
            +     +        L +        G   C              L V +        +
Sbjct: 53  PFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSE 112

Query: 61  NIRITEESSRSL----------QISWT-------APYSGNTAITQY 89
             +  + S  ++           + W        AP + N  + + 
Sbjct: 113 RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE 158

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 10  QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
            V+ +G ++ L I     +D+G  +C       TA     L V+E    P
Sbjct: 55  DVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTAS----LHVEEKASGP 100

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 17  ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
           +    +     +DS   +C+A +  G  E   Q+ V+  P+A   
Sbjct: 254 VGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTK 298

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 20/87 (22%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGT---AEMTIQLLVQETP----EAPK 60
           R + L  G    L I +    D G   C+ATN  G    +   + + VQ         P 
Sbjct: 157 RIKQLRSG---ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPM 213

Query: 61  NIRITEESSRSLQ----------ISWT 77
           +  I    + ++           + W 
Sbjct: 214 SHEIMPGGNVNITCVAVGSPMPYVKWM 240

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 21/88 (23%)

Query: 11  VLEDGMISELGIANV-LRQDSGTLSCLATNYHGTAEMTIQLLVQETP----------EAP 59
             ++   + L I  +   +D     C+A N  G   +  +L V                P
Sbjct: 56  EFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGP 115

Query: 60  KNIRITEESSRSL----------QISWT 77
           +   +    + ++          +I+W 
Sbjct: 116 QLKVVERTRTATMLCAASGNPDPEITWF 143

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 3  SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
           R        ED +   L I +V  +DS ++   A N  G       LLVQ 
Sbjct: 50 DRIYWYWP--EDNVCE-LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 14/51 (27%), Positives = 19/51 (37%)

Query: 4   RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
             +             L I++    DSG   C A N  G+A +T  L V E
Sbjct: 238 HNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 13/54 (24%), Positives = 19/54 (35%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
           +R  +      D    +L    V   DSG   C A N +GTA  +    +    
Sbjct: 154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGT--AEMTIQLLVQETPE---APKNIRITEESSRSL 72
           S +  ++V R+D+G  +C+ +   G    E++I L V   P          +T  +   L
Sbjct: 65  SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVL 124

Query: 73  Q 73
            
Sbjct: 125 T 125

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 2/54 (3%)

Query: 3   SRYTIRE--QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
               + +         + EL I +     +G+  C  +           L V E
Sbjct: 55  QHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 3   SRYTIREQVLEDGMISELGIANV-LRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
           +    R  V      SEL I N+ +  D G   C  T+  G+ +  I L V+
Sbjct: 131 NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 6  TIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
            +  V E G+ S L    V   D+G  +C+A N  G A  T+QL V  
Sbjct: 51 LHKMIVSEKGLHS-LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 20  LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA---PKNIRITEESS 69
           L I + + +DSG   C+  N  G   +   L V     A   P    +     
Sbjct: 272 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRP 324

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
           S L I +V ++D G   C   N   +AE + +L +
Sbjct: 353 SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 20  LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA-----PKNIRITEESSRSLQI 74
           L +   L++DSGT  C   N     +M+I+L V E  +A          +T  +S  L  
Sbjct: 83  LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVC 142

Query: 75  SWTAPY-SGNTAITQYIIQ-YKSSEEMWPTQPLKIIVPGSQT 114
              + +    T +    IQ YK S  +       + V G+  
Sbjct: 143 PDLSEFTRDKTDVK---IQWYKDSLLLDKDNEKFLSVRGTTH 181

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 17  ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITE 66
            S + I  ++ +D+GT  C A+N      +T    V+    A   + + E
Sbjct: 89  ASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWV-RAQAVVLVLE 137

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMT-IQLLVQETPEAPK 60
               L+DG    L I N   +D G   C+A N  GT       L V+      K
Sbjct: 156 PRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTK 206

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
           +  +      +EL + N++  D G   C ATN  G  E    L V 
Sbjct: 144 KYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 42/159 (26%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLVQETP------EAPK 60
           R  +L +     L I N+ + D G   C       G  +    +++   P      +   
Sbjct: 50  RFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSF 106

Query: 61  NIRITEESSRSL----------QISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVP 110
           N         +            ISW                +++ + +   +  K I+ 
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISW----------------FRNGKLIEENE--KYILK 148

Query: 111 GSQTSATLQPLLP--ATQYQVRLLAENPLGMSETGAELQ 147
           GS T  T++ ++      Y  R  A N  G  E  A LQ
Sbjct: 149 GSNTELTVRNIINSDGGPYVCR--ATNKAGEDEKQAFLQ 185

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEES 68
            EL I+N+  ++SG  +C A N       T    +  + E PK    +  S
Sbjct: 426 QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNS 476

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQ---- 73
            EL I N+   +SG+ +C A N       T    +    E PK   IT  +S  ++    
Sbjct: 248 QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPK-PFITSNNSNPVEDEDA 306

Query: 74  ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQ-----YQ 128
           ++ T             + + +++ +  +  L++    S  + TL  LL  T+     Y+
Sbjct: 307 VALTCEPEIQNTT---YLWWVNNQSLPVSPRLQL----SNDNRTLT-LLSVTRNDVGPYE 358

Query: 129 VRLLAENPLGMSET-GAELQASTLEEAPNGAPREVTSDPG 167
                +N L +  +    L      + P  +P      PG
Sbjct: 359 CG--IQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPG 396

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
             L IA +   ++GT +C  +N       +I   + 
Sbjct: 604 QVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 9/146 (6%)

Query: 4   RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK-NI 62
           R       ++ G  S + + N+   D GT  C      G A     L V   P   +  +
Sbjct: 71  RVHFTSNDVKSGDAS-INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFV 129

Query: 63  RITEESSRSLQISWTAPYSGNTAITQYIIQ-YKSSEEMWPTQPLKIIVPGSQTSATLQPL 121
             +EE     ++       G+  +     +  K S+    T P   +   +    +++  
Sbjct: 130 DGSEEIGNDFKLKCEPK-EGSLPLQ---FEWQKLSDS--QTMPTPWLAEMTSPVISVKNA 183

Query: 122 LPATQYQVRLLAENPLGMSETGAELQ 147
                       +N +G  +    L 
Sbjct: 184 SSEYSGTYSCTVQNRVGSDQCMLRLD 209

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 42.4 bits (99), Expect = 5e-05
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
             + + N   + SGT SC   N  G+ +  ++L V  
Sbjct: 176 PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP---EAPKN 61
               +  G   +L I    + D+G   C+ TN  G  E    +L V E P   +A  +
Sbjct: 158 ERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAAAH 212

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 18/87 (20%)

Query: 8   REQVLEDG--MISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP----EAPK 60
              +L  G      +      R D G   C+A NY G A      L V        + P 
Sbjct: 60  HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPS 119

Query: 61  NIRITEESSRSLQ-----------ISW 76
           ++ +       ++           ISW
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISW 146

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
            EL    +   D+G  SC A N +GT   +  + ++
Sbjct: 171 GELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMT--IQLLVQETPE---APKNIRITEESSRSL 72
           + +   +V R+D+GT +C+ +   G +     ++L+V   P           T  +   L
Sbjct: 68  TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVL 127

Query: 73  Q 73
            
Sbjct: 128 T 128

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
                +    +D   SEL I NV + D     C+A N  G  + +I L V  
Sbjct: 241 EEDDEKHIFSDDS--SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 17/89 (19%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETP---EA 58
            R ++     +      L I N    D+G   C+ T   GT    T+ + + +      A
Sbjct: 50  QRISVVWNDDDSST---LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA 106

Query: 59  PKNIRITEESSRSL----------QISWT 77
           P      E     +           I W 
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
            +Y +   +  +  I E+ +  +  +D GT +    +   T   T+ L+     +  K  
Sbjct: 48  PKYKMH--IDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 105

Query: 63  RITE 66
               
Sbjct: 106 EFQR 109

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 12  LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
            +DG I  L I    ++D+G    +  +  G  +  ++L+ +
Sbjct: 166 FKDG-ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206

>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha; GM-CSF, receptor complex, dodecamer, disease mutation, glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens} Length = 120

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 9/77 (11%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 59  PKNIRITEESSRSLQISWTAPYSGNTAIT---QYIIQY-KSSEEMWPTQPLKIIVPGSQT 114
           P N+ +   ++    + W  P +         QY +   + + +      L  +    + 
Sbjct: 21  PSNVTVRCNTTH-CLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLEN 79

Query: 115 SATLQPLLPATQYQVRL 131
                   P  ++ V++
Sbjct: 80  RYNFPSSEPRAKHSVKI 96

>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha; GM-CSF, receptor complex, dodecamer, disease mutation, glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens} Length = 120

 Score = 40.1 bits (93), Expect = 9e-05
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 159 PREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELD 218
           P  VT      + T  L++WK P   ++   L   D  YQ+               + + 
Sbjct: 21  PSNVTVR---CNTTHCLVRWKQPR--TYQ-KLSYLDFQYQLDVHRKNTQPGTENLLINVS 74

Query: 219 NQYEGELRIPGLTPYTKYAIVVR-GYNSVGK-GPFSEPFIARTNEG 262
              E     P   P  K+++ +R     +     +SE     +++G
Sbjct: 75  GDLENRYNFPSSEPRAKHSVKIRAADVRILNWSSWSEAIEFGSDDG 120

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 12/42 (28%), Positives = 15/42 (35%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
           S L I       +GT  C     H      I + V+E   AP
Sbjct: 131 SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAP 172

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
           R  V  DG    L +     QD+GT  C+A N  G   M   L V+
Sbjct: 434 RLTVFPDGT---LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 16/117 (13%)

Query: 4   RYTIREQVLEDGMISE--LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
           R+  R  ++ D   ++  L + +V + D G  +C     + +  M   + +   PE P++
Sbjct: 68  RFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD 127

Query: 62  IRITEESSRSLQ-------------ISWTAPYSGNTAITQYIIQYKSSEEMWPTQPL 105
           +R+    +  ++             ++W    SG+    + ++ Y S+      Q L
Sbjct: 128 LRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS-SGSHTEEETVLSYDSNMRSGKFQSL 183

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 17  ISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP---EAPKNIRITEESSRSL 72
           +S+L I ++   D+G   CL    H T       + ++  P   E P++  +   +  +L
Sbjct: 67  VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNL 126

Query: 73  Q 73
            
Sbjct: 127 S 127

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 32/273 (11%), Positives = 74/273 (27%), Gaps = 43/273 (15%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATN------------YHGTAEMTIQLLVQET 55
             +VL  G    L I      D+G  +C                       T  L  Q+ 
Sbjct: 43  SSEVLGSG--KTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKE 100

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQ------PLKIIV 109
           P+    +R   ++       W                  SS+    T         ++  
Sbjct: 101 PKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRG 160

Query: 110 PGSQTSATLQPLLPA--------TQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPRE 161
              +   +++    +           +V + A + L   +  +      + +     P+ 
Sbjct: 161 DNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKP--DPPKN 218

Query: 162 VTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQY 221
           +   P + +  ++ + W+ P   +W+     + + + +             KS       
Sbjct: 219 LQLKP-LKNSRQVEVSWEYPD--TWSTPHSYFSLTFCVQ---------VQGKSKREKKDR 266

Query: 222 E-GELRIPGLTPYTKYAIVVRGYNSVGKGPFSE 253
              +     +      +I VR  +      +SE
Sbjct: 267 VFTDKTSATVICRKNASISVRAQDRYYSSSWSE 299

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 4/49 (8%)

Query: 8  REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
          R Q    G    L +      D+G +          A     L+V+E  
Sbjct: 55 RFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKAS----LIVRERS 99

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 4   RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
           +Y++R+    +G + EL + N+  QDSG  SC      G    +  L V   P  P
Sbjct: 53  KYSLRQ----EGAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGP 100

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
           R  + +DG   EL I  ++ +D+G   C+     G    +  L V+  P  P 
Sbjct: 63  RHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPS 111

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 8  REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
            +++EDG    L + N     +G +S  A N    A     L V+E
Sbjct: 50 DCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAA----NLKVKE 92

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
           ++L I  V +  + TL C  TN  G  +  + + V
Sbjct: 268 AQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
           + L I N+  +D G   C A N  G  +   ++ VQ
Sbjct: 165 AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 65  TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPA 124
              +  SL ISW A Y G   ++ Y I Y  +    P Q  +  VP S ++AT+  L P 
Sbjct: 113 VAATPTSLLISWDASYYG---VSYYRITYGETGGNSPVQ--EFTVPYSSSTATISGLKPG 167

Query: 125 TQYQVRLLAENPLGMSETGA 144
             Y + + A +    S   +
Sbjct: 168 VDYTITVYAYSDYYGSHHYS 187

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 22  IANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
              +    +GT  C ATN  GT    +++ + E  
Sbjct: 288 KGPINYSLAGTYICEATNPIGTRSGQVEVNITEAA 322

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 16  MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
           +IS   +         +L+C+   +    + ++ L VQ  PE
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPE 233

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 4  RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
           +  R +  +DG    L  ++V+++D G    +       AE    L+V+E
Sbjct: 53 SFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAE----LIVEE 99

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETP---EAPKNIRITEESS 69
             L     L +D G  +C   N  G  +  +++L V   P   + P+ + + ++  
Sbjct: 270 KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQ 325

>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I Length = 229

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 26/208 (12%), Positives = 66/208 (31%), Gaps = 16/208 (7%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS-SEEMWPTQPLKIIVPGSQTSA 116
            P N+ I   +   + + W            + ++ K+   +        I +     + 
Sbjct: 14  TPTNVTIESYNMNPI-VYWEYQIMPQV--PVFTVEVKNYGVKNSEWIDACINISHHYCNI 70

Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPR-EVTSDPG-----VVD 170
           +     P+    VR+ A      S      + +   +   G P+ ++  +       +  
Sbjct: 71  SDHVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDGKIGPPKLDIRKEEKQIMIDIFH 130

Query: 171 PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEG--ELRIP 228
           P+  +   +      ++     Y   Y +    + +   Y + + + D+  E   +L IP
Sbjct: 131 PSVFVNGDEQEV--DYDPETTCYIRVYNVYVRMNGSEIQYKILTQKEDDCDEIQCQLAIP 188

Query: 229 GLTPYTKYAIVVRGYNSVG--KGPFSEP 254
             +  ++Y +   G   V       S+ 
Sbjct: 189 VSSLNSQYCVSAEGVLHVWGVTTEKSKE 216

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 8/56 (14%)

Query: 3  SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA 58
          ++Y         G    L I N    D       A    G  + + +L V+  P +
Sbjct: 52 TKYIFEH----KGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPSS 99

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 10  QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
           Q  ++G+   L I+ + + DS T +C        A+    LLVQ     P 
Sbjct: 55  QPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQ----LLVQGRRSGPS 101

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
            L + +V+  D G  +C+  N +G+   T  L V
Sbjct: 65 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
           R ++  +G    L I    + D+   S + T    +A++++   ++  P
Sbjct: 54  RYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVD--LKSGP 100

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGT--AEMTIQLLVQETPEAPK 60
             ++ ++G    L I ++   D         +  G    E    L +QE    PK
Sbjct: 59  TYKLFKNGT---LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK 110

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 6/52 (11%), Positives = 17/52 (32%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESS 69
               +  V  +  GT  C   N   + +     ++ +      +    E+++
Sbjct: 165 KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 39.4 bits (91), Expect = 7e-04
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 18  SELGIANVLRQDSGTL-SCLATNYHGTAEMTIQLLVQ 53
           + L   NV  +  G   +C   NY+    +T  ++++
Sbjct: 293 ATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 8/52 (15%), Positives = 13/52 (25%), Gaps = 3/52 (5%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
           S    R           L I      D+G + C      G  +      + +
Sbjct: 201 SEIAGRASFSGAR---NLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 18  SELGIANVLRQDSGTLSCLATNYHG--TAEMTIQLLVQETPE 57
           S L I +   +DSGT +C  T        E  I + V E+  
Sbjct: 242 SILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH 283

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 8/70 (11%)

Query: 3   SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
           +R +  + VL             L  D+G  +C+  N    +++   L V +      + 
Sbjct: 72  NRISKEKDVLW--------FRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSP 123

Query: 63  RITEESSRSL 72
                    +
Sbjct: 124 MKLPVHKLYI 133

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 9/64 (14%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEE 67
              + ++  +  L +  V  +DSG   C           +  + V E P     +RI   
Sbjct: 58  ALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPP-----VRIIYS 108

Query: 68  SSRS 71
              S
Sbjct: 109 GPSS 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	100.0
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.97
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.97
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.97
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.97
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.96
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.96
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.96
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.96
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.95
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.95
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.95
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.95
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.95
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.95
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.94
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.94
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.94
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.94
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.94
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.93
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.93
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.93
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.93
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.93
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.93
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.92
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.92
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.92
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.91
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.91
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.91
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.9
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.89
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.89
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.88
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.88
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.87
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.87
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.87
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.86
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	99.86
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	99.86
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.85
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.84
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.84
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.83
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.83
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	99.82
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	99.81
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	99.8
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	99.8
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	99.79
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	99.79
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	99.79
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	99.79
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	99.78
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	99.78
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	99.78
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.77
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.77
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	99.77
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	99.76
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.76
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	99.75
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	99.75
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.74
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.74
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	99.74
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.74
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.74
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.74
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.73
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.73
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	99.72
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.72
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.72
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.71
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.71
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.7
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.7
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.7
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.7
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	99.69
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.69
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.69
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	99.69
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.69
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	99.69
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	99.68
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.68
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.68
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.68
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.68
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.67
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	99.67
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	99.67
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.66
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.66
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	99.66
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	99.66
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.66
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.66
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.66
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.65
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.65
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	99.64
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	99.64
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	99.64
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	99.63
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.63
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	99.63
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.63
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.63
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.62
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	99.62
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.62
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	99.61
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.61
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.61
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	99.61
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.6
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	99.6
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.6
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.59
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	99.59
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.59
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.59
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.59
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	99.59
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.59
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	99.58
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	99.58
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.58
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.58
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	99.58
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	99.58
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	99.58
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.58
2erj_C	247	Cytokine receptor common gamma chain; immune syste	99.58
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.57
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	99.57
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.57
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.57
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	99.57
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.56
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	99.56
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.56
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.56
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	99.56
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.55
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	99.55
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	99.55
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.54
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	99.54
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.54
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	99.54
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.54
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.53
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	99.53
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.53
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	99.52
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	99.52
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	99.52
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	99.51
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	99.51
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.51
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.51
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.5
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	99.5
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	99.5
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.5
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	99.5
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	99.5
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	99.5
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.49
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.49
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	99.49
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	99.48
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.48
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	99.48
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	99.47
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	99.47
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	99.46
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.46
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	99.46
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	99.46
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	99.46
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.45
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	99.45
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	99.44
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	99.44
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	99.44
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	99.44
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	99.44
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	99.44
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	99.44
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	99.44
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.43
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	99.43
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.43
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	99.43
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	99.43
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	99.42
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	99.42
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	99.42
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	99.42
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	99.4
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	99.4
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.4
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	99.4
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	99.4
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	99.39
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	99.39
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	99.39
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	99.39
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	99.38
3og6_B	226	Interleukin 28 receptor, alpha (interferon, lambd	99.37
2dle_A	104	Receptor-type tyrosine-protein phosphatase ETA; pr	99.36
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.36
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	99.35
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	99.35
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	99.35
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.34
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	99.33
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.32
3tgx_A	219	Interleukin-21 receptor; class I cytokine, class I	99.32
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	99.31
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	99.31
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	99.3
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	99.29
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	99.28
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	99.27
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	99.26
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	99.25
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.24
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	99.22
2dle_A	104	Receptor-type tyrosine-protein phosphatase ETA; pr	99.22
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	99.21
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	99.21
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.21
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	99.21
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	99.2
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	99.2
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	99.19
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	99.19
3dlq_R	211	Interleukin-22 receptor subunit alpha-1; cytokine-	99.19
1fyh_B	229	Interferon-gamma receptor alpha chain; cytokine-re	99.15
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	99.15
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	99.13
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	99.12
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.11
1oww_A	98	FN, fibronectin first type III module, CIG; fibron	99.11
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	99.11
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	99.11
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	99.06
2erj_C	247	Cytokine receptor common gamma chain; immune syste	99.05
1wft_A	123	1700129L13RIK protein; FN3 domain, similar to HOST	99.04
3tgx_A	219	Interleukin-21 receptor; class I cytokine, class I	99.01
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	98.96
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	98.94
1y6k_R	214	Interleukin-10 receptor alpha chain; helix bundle,	98.91
3csg_A	461	MBP, maltose-binding protein monobody YS1 fusion,	98.91
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	98.88
1q38_A	89	Fibronectin; amyloid fibril, anastellin, extracell	98.84
3s9d_B	199	Interferon alpha/beta receptor 2; human, type I in	98.84
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.81
2hft_A	218	Human tissue factor; coagulation factor; 1.69A {Ho	98.79
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.73
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.71
1wft_A	123	1700129L13RIK protein; FN3 domain, similar to HOST	98.71
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.71
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.65
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.65
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.63
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.62
3csg_A	461	MBP, maltose-binding protein monobody YS1 fusion,	98.58
1oww_A	98	FN, fibronectin first type III module, CIG; fibron	98.51
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	98.5
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.48
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.43
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	98.42
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.4
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	98.38
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.37
2csp_A	130	RIM-BP2, RIM binding protein 2; FN3 domain, struct	98.35
1q38_A	89	Fibronectin; amyloid fibril, anastellin, extracell	98.33
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.3
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.28
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.28
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.27
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.25
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	98.25
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.23
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.21
3bes_R	250	Interferon-gamma binding protein C4R; orthopoxviru	98.2
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.18
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.18
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.17
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.17
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.13
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.11
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.11
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	98.11
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.11
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.11
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.1
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.1
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.08
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.07
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.07
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.05
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.03
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.03
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.03
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.02
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.0
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.0
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	97.99
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	97.99
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	97.98
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	97.98
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	97.97
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	97.97
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	97.97
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	97.97
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	97.96
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	97.96
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	97.96
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	97.93
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	97.92
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	97.91
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	97.9
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	97.9
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	97.89
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	97.89
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	97.88
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	97.88
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	97.87
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	97.87
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	97.86
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	97.86
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	97.85
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	97.84
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	97.84
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	97.83
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	97.83
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	97.83
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	97.83
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	97.82
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	97.81
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	97.81
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	97.8
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	97.78
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	97.78
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	97.78
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	97.78
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	97.77
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	97.76
1he7_A	126	High affinity nerve growth factor receptor; transf	97.76
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	97.75
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	97.75
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	97.75
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	97.74
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	97.74
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	97.73
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	97.73
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	97.73
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	97.73
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	97.73
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	97.72
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	97.72
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	97.72
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	97.71
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	97.71
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	97.71
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	97.71
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	97.71
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	97.7
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	97.7
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	97.69
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	97.69
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	97.69
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	97.68
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	97.68
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	97.68
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	97.68
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	97.67
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	97.65
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	97.64
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	97.64
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	97.64
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	97.63
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	97.63
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	97.61
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	97.61
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	97.61
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	97.61
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	97.61
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.59
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	97.58
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	97.58
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	97.58
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.58
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	97.58
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	97.57
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	97.52
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	97.51
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	97.5
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	97.5
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	97.49
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	97.48
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	97.48
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	97.47
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.47
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	97.46
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	97.46
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	97.44
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	97.43
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	97.42
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	97.41
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	97.41
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	97.41
3b4n_A	344	Endo-pectate lyase; pectin, galacturonic acid, rig	97.4
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	97.4
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	97.39
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	97.39
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	97.38
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	97.38
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	97.37
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	97.36
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	97.36
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	97.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.33
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	97.33
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	97.33
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	97.33
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	97.33
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	97.33
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	97.33
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	97.32
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.32
3ux9_B	256	SCFV antibody; five helices, long loop connecting	97.32
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	97.31
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	97.31
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.31
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	97.3
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	97.3
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	97.3
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	97.29
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	97.29
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	97.27
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	97.27
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	97.26
3khq_A	133	B-cell antigen receptor complex-associated protei	97.26
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	97.26
3cxe_C	120	Granulocyte-macrophage colony-stimulating factor s	97.24
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	97.24
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	97.24
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	97.23
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	97.22
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	97.21
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	97.21
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	97.2
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	97.16
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	97.16
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	97.15
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	97.14
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	97.14
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	97.13
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	97.12
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	97.12
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	97.11
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	97.11
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	97.11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	97.11
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	97.1
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	97.1
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	97.09
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	97.06
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	97.05
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	97.04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	97.04
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	97.04
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	97.03
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	97.01
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	96.99
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	96.99
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	96.99
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	96.99
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	96.98
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	96.96
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	96.95
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	96.92
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	96.92

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=1.7e-30  Score=208.28  Aligned_cols=234  Identities=21%  Similarity=0.273  Sum_probs=185.6

Q ss_pred             ecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCC-CCccceEEE
Q psy6638          12 LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYI   90 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~   90 (273)
                      ..++....|.|.++.+.|.|.|+|.|.|..|.....+.+.+..+|.+|..+.+.......+.|.|.++.. ++.++..|.
T Consensus       152 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~  231 (389)
T 2jll_A          152 YSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQ  231 (389)
T ss_dssp             EECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEE
T ss_pred             eccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEE
Confidence            3455667899999999999999999999999988888888889999998888888888999999997753 445788999


Q ss_pred             EEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCcc
Q psy6638          91 IQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVV  169 (273)
Q Consensus        91 v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~  169 (273)
                      ++|+..+. .|.    ..........+.|.+|.+++.|.|+|.|.|..|.+.++....+.+....|+.+|. +....  .
T Consensus       232 v~~~~~~~~~~~----~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~-~~~~~--~  304 (389)
T 2jll_A          232 VDVKEVASEIWK----IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQP--S  304 (389)
T ss_dssp             EEEEETTCSCCE----EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCC-EEEEE--E
T ss_pred             EEEEECCCcccE----EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCc-ccccc--C
Confidence            99998654 443    2233345578999999999999999999999999998888888887776766774 55555  6


Q ss_pred             CCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcC
Q psy6638         170 DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG  249 (273)
Q Consensus       170 ~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~  249 (273)
                      +.+++.|+|+++.+  .++.+.+|.|+|+..+...+       ............++|.+|.+++.|.|+|+|.|..|.|
T Consensus       305 ~~~~v~l~W~~p~~--~~~~i~~Y~v~~~~~~~~~~-------~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s  375 (389)
T 2jll_A          305 SGKSFKLSITKQDD--GGAPILEYIVKYRSKDKEDQ-------WLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYS  375 (389)
T ss_dssp             TTTEEEEEECCCCC--CSSCCCEEEEEEEC-----C-------CBCCEECTTCCEEEECSCCTTCEEEEEEEEEC-CCBC
T ss_pred             cCCEEEEEEECCCC--CCCcccEEEEEEEeCCCCcc-------eeEeeccCCcceEEeCCcCCCCEEEEEEEEEcCCcCC
Confidence            88999999999865  47789999999998544321       1111123345789999999999999999999999999


Q ss_pred             CCCccEEEEcCCC
Q psy6638         250 PFSEPFIARTNEG  262 (273)
Q Consensus       250 ~~s~~~~~~t~~~  262 (273)
                      ++|. +.++|.+.
T Consensus       376 ~~s~-~~~~T~~~  387 (389)
T 2jll_A          376 EPTV-YEFSMPPK  387 (389)
T ss_dssp             CCEE-EEEECCCC
T ss_pred             Ccee-eEecCCCC
Confidence            9885 57777654

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=100.00  E-value=7.5e-31  Score=192.07  Aligned_cols=200  Identities=24%  Similarity=0.397  Sum_probs=163.6

Q ss_pred             EecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC--CCCCCccceEEecCCccEEEecCCCCCCeEEE
Q psy6638          52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE--EMWPTQPLKIIVPGSQTSATLQPLLPATQYQV  129 (273)
Q Consensus        52 ~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~  129 (273)
                      +..+|.+|.++.+.. +.+++.|+|.++.++++++.+|.|+++...  +.|...  ....+...+.+.+ +|.|++.|.|
T Consensus         2 v~~~P~~P~~~~~~~-~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~w~~~--~~~~~~~~~~~~~-~L~p~t~Y~~   77 (205)
T 1cfb_A            2 VQDVPNAPKLTGITC-QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAA--YEKVPNTDSSFVV-QMSPWANYTF   77 (205)
T ss_dssp             CCCCCCCCEEEEEEE-CSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEE--EEEEETTCSEEEE-ECCSSEEEEE
T ss_pred             cccCCCCCCCcEEEe-cCCEEEEEEECcccCCCceEEEEEEEecCCCCCCceee--eeccCCCceEEEE-eCCCCCEEEE
Confidence            467899999999999 999999999998777788999999998753  455421  2233445567777 8999999999


Q ss_pred             EEEEeCCCCCCCCC-cceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccce
Q psy6638         130 RLLAENPLGMSETG-AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS  208 (273)
Q Consensus       130 ~v~a~~~~g~~~~s-~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~  208 (273)
                      +|+|.|..|.+.++ ....+.+....|+.+|.++.+..  .+.+++.|.|++|.....+|.+.+|.|+|+..+...    
T Consensus        78 ~V~A~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~~~~~--~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~----  151 (205)
T 1cfb_A           78 RVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQG--TEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAA----  151 (205)
T ss_dssp             EEEEEETTEECCCCCCCCCEEECCCCCSCCCSCCEEEC--SSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTC----
T ss_pred             EEEEEECCccCCCCCCceeEEcCCcCCCCCCeeeEeec--CCCCeEEEEEECCCccccCCCceEEEEEEEECCCCC----
Confidence            99999999999888 56788888888877888888888  788999999999984446889999999999876542    


Q ss_pred             eeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCC-CccEEEEcCCCC
Q psy6638         209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPF-SEPFIARTNEGD  263 (273)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~-s~~~~~~t~~~~  263 (273)
                        .+............++|.+|.+++.|.|+|+|+|..|.|++ |+.+.++|.+++
T Consensus       152 --~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~~T~e~v  205 (205)
T 1cfb_A          152 --AWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR  205 (205)
T ss_dssp             --CCEEEEECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEEESSSCC
T ss_pred             --CcEEEEecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEEecCCCC
Confidence              12333333434689999999999999999999999999995 788999998864

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.97  E-value=2.2e-29  Score=195.22  Aligned_cols=233  Identities=18%  Similarity=0.300  Sum_probs=174.6

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCcee---EEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEM---TIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~---~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      ++..+.|.|.++.+. .|.|+|.|.+. |....   .+.+.+..+|.+|.++.+.......+.|+|.++.+.+ ....|.
T Consensus        61 ~~~~~~L~i~~~~~~-~g~Y~C~a~~~-g~~~~~~~~~~l~v~~~P~~P~~l~~~~~~~~~v~l~W~~~~~~~-~~~~Y~  137 (303)
T 1i1r_A           61 NRTASSVTFTDIASL-NIQLTCNILTF-GQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETH-LETNFT  137 (303)
T ss_dssp             ETTEEEEEECSCCCS-EEEEEEEEEET-TTEEEEEEEEEEEEECCCCCCEEEEEEEETTSCCEEEEECCSCCS-SCCEEE
T ss_pred             CCcEEEEEEcCcCCC-ceEEEEecccC-CCcceEEEEEEEeccCCCCCCeeeEEEECCCCcEEEEccCCCCCC-CCcCEE
Confidence            344678999999988 59999999874 44332   4556678899999999888877789999999986544 356999


Q ss_pred             EEEEeCCCCCCCccceEEecCCccEEEecCC-CCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCcc
Q psy6638          91 IQYKSSEEMWPTQPLKIIVPGSQTSATLQPL-LPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVV  169 (273)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~  169 (273)
                      |+++..+..+.   .........+.+.+.+| .+++.|.|+|.|.|..|.+.. ....+.+....++.+|.++.+.....
T Consensus       138 v~~~~~~~~~~---~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s-~~~~~~~~~~~~p~pP~~~~v~~~~~  213 (303)
T 1i1r_A          138 LKSEWATHKFA---DCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS-DHINFDPVYKVKPNPPHNLSVINSEE  213 (303)
T ss_dssp             EEEEETTEECC---CEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEEC-CCEEECGGGGEECCCCEEEEEECCSS
T ss_pred             EEEEecCCCCc---cCCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCccc-CCEEECHHHeEecCCCcceEEEEecC
Confidence            99987643322   12223445678999999 899999999999999987653 33445444445667888888764103


Q ss_pred             CCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEec--CCcccEEEcCCCCccceEEEEEEEecCCC
Q psy6638         170 DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELD--NQYEGELRIPGLTPYTKYAIVVRGYNSVG  247 (273)
Q Consensus       170 ~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g  247 (273)
                      +.+++.|+|++|..  .++.+.+|.|+|+..+...       +......  ......++|.+|.|++.|.|+|+|.|..|
T Consensus       214 ~~~sv~l~W~~p~~--~~~~i~~Y~v~y~~~~~~~-------w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G  284 (303)
T 1i1r_A          214 LSSILKLTWTNPSI--KSVIILKYNIQYRTKDAST-------WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDG  284 (303)
T ss_dssp             SSSCEEEEEECCGG--GGTSCEEEEEEEEETTCSS-------CEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTS
T ss_pred             CCCEEEEEECCCCC--CCcccEEEEEEEEeCCCCC-------ceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCC
Confidence            67899999999976  4678999999999876432       2222111  33457899999999999999999999988


Q ss_pred             cCCC---CccEEEEcCCC
Q psy6638         248 KGPF---SEPFIARTNEG  262 (273)
Q Consensus       248 ~~~~---s~~~~~~t~~~  262 (273)
                      .|++   |+.+.++|.++
T Consensus       285 ~G~~S~wS~~~~~~T~e~  302 (303)
T 1i1r_A          285 KGYWSDWSEEASGITYED  302 (303)
T ss_dssp             CSCCCCCCCCEEEECCCC
T ss_pred             CCCcCCCCCccceeCCcC
Confidence            7665   56788888775

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.97  E-value=1.3e-28  Score=212.24  Aligned_cols=240  Identities=20%  Similarity=0.295  Sum_probs=197.1

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCC-ceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCC-CCCccceEEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGT-AEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPY-SGNTAITQYIIQY   93 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~-~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~   93 (273)
                      ..+.|.|.++.+.|.|.|+|.|.|..|. ....+.+.+..+|.+|..+.+.......+.|.|.++. .+++++..|.|+|
T Consensus       221 ~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~  300 (731)
T 2v5y_A          221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEY  300 (731)
T ss_dssp             EEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEE
T ss_pred             ceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEE
Confidence            3578999999999999999999999998 5557788899999988888888888899999999764 4557899999999


Q ss_pred             EeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe--CCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCC
Q psy6638          94 KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE--NPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP  171 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~--~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~  171 (273)
                      +..+..|..     ........+.+.+|.+++.|.|+|.|.  |..|.+.++..+.+.+....|+.+|.++.+..  .+.
T Consensus       301 ~~~~~~~~~-----~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~--~~~  373 (731)
T 2v5y_A          301 CTASGSWND-----RQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVE--VKS  373 (731)
T ss_dssp             EESSSSCEE-----EEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEE--ECS
T ss_pred             EECCCCceE-----EeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEe--ccC
Confidence            987766652     122345789999999999999999999  99999998988999998888888999999888  899


Q ss_pred             ceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeee-EEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638         172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKS-VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       172 ~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                      +++.|+|++|.....++.+.+|.|+|+........    .+.. ..........++|.+|.|++.|.|+|+|+|..|.|+
T Consensus       374 ~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~  449 (731)
T 2v5y_A          374 RQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQ----VREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE  449 (731)
T ss_dssp             SCEEEEEECCCHHHHCSSSCEEEEEEEEESSSSEE----EEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE
T ss_pred             CeEEEEEECCCcccccceeeeEEEEEEEccCCCCc----cceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC
Confidence            99999999986533355678999999987532210    1111 112334467899999999999999999999999985


Q ss_pred             CCccEEEEcCCCCCccc
Q psy6638         251 FSEPFIARTNEGDFLFL  267 (273)
Q Consensus       251 ~s~~~~~~t~~~~P~~~  267 (273)
                       |..+.++|.+++|+..
T Consensus       450 -S~~~~~~T~~~~P~~p  465 (731)
T 2v5y_A          450 -SQELIVQTDEDLPGAV  465 (731)
T ss_dssp             -CCCEEEECCCCCCCCC
T ss_pred             -CceEEEEccCCCCCCC
Confidence             8899999998877653

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.97  E-value=5.9e-29  Score=193.60  Aligned_cols=236  Identities=18%  Similarity=0.152  Sum_probs=167.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEe-eccEEEEEEeCCCCCCccceEEEEEEEeC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEE-SSRSLQISWTAPYSGNTAITQYIIQYKSS   96 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~-~~~~~~l~W~~~~~~~~~~~~y~v~~~~~   96 (273)
                      +.|.|.++.+.|.|.|.|.+.+..+.....+.+.+..+|.+|.++.+... ....+.|+|.++.+.+.+ ..|.|+++..
T Consensus        61 ~~L~i~~~~~~d~g~y~c~~~~~~~~~~~~~~l~v~~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~~~~-~~Y~l~~~~~  139 (313)
T 2d9q_B           61 SIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLP-TSFTLKSFKS  139 (313)
T ss_dssp             EEEEESCCCSSEEEEEEEEESSSSEEEEEEEEEEECCCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC-CEEEEEEEEC
T ss_pred             EEEEEeccCCCccceEEeeecCCCceeEEEEEEccCCCCCCCccceeeECCCCccEEEEecCCCCCCCc-eeEEEEEEec
Confidence            78999999999999999988664444344667777889999999987776 368999999998764444 5799999876


Q ss_pred             CCCCCCc--cceEEe-cCCccEEEe--cCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCcc--
Q psy6638          97 EEMWPTQ--PLKIIV-PGSQTSATL--QPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVV--  169 (273)
Q Consensus        97 ~~~~~~~--~~~~~~-~~~~~~~~~--~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~--  169 (273)
                      ...+...  ...... ......+.+  .+|.+++.|.|+|.|.|..|.+. +..+.+.+....++.+|.++.+..  .  
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~--~~~  216 (313)
T 2d9q_B          140 RGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSM-SPQLCLDPMDVVKLEPPMLRTMDP--SPE  216 (313)
T ss_dssp             CTTSCSCCCCEEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEE-CCCEEECGGGGEECCCCEEEECCC-----
T ss_pred             CCCcccCCcccccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCcc-CccEEEehhheeccCcCceeEEEE--ecc
Confidence            4322111  111111 112234444  56999999999999999998753 444566666656667899988876  4  


Q ss_pred             ----CCceEEEEEeCCCCCCccceeeeEEEEEE-EcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEec
Q psy6638         170 ----DPTELLIKWKAPPRESWNGVLLGYDVGYQ-ISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYN  244 (273)
Q Consensus       170 ----~~~~i~l~W~~~~~~~~~~~i~~y~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  244 (273)
                          ..+.+.|+|++|..  .+..+++|+|+|+ ..+...       |............++|.+|.|++.|.|+|+|.|
T Consensus       217 ~~~~~~~~l~l~W~~p~~--~~~~~l~Y~v~y~~~~~~~~-------w~~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~  287 (313)
T 2d9q_B          217 AAPPQAGCLQLSWEPWQP--GLHINQKCELRHKPQRGEAS-------WALVGPLPLEALQYELCGLLPATAYTLQIRCIR  287 (313)
T ss_dssp             ----CCSCEEEEEECCGG--GTTSCEEEEEEEEESSSCCC-------CEEEEEECSCEEEEEECSCCSCCCEEEEEEEEE
T ss_pred             cccCCCCeEEEEECCCCC--CCceeEEEEEEEccCCCCCC-------cEEcccccCcceEEEEeCCCCCCeEEEEEEeeE
Confidence                46899999999864  2334579999999 444332       222222233357899999999999999999999


Q ss_pred             CCCcC---CCCccEEEEcCCCCCcc
Q psy6638         245 SVGKG---PFSEPFIARTNEGDFLF  266 (273)
Q Consensus       245 ~~g~~---~~s~~~~~~t~~~~P~~  266 (273)
                      ..|.|   +||+.+.++|.+++|+.
T Consensus       288 ~~g~G~wS~wS~~~~~~T~~~~P~~  312 (313)
T 2d9q_B          288 WPLPGHWSDWSPSLELRTTERAAAP  312 (313)
T ss_dssp             CSSCCCCCCCCCCEEECCCC-----
T ss_pred             CCCCCccCCCCCccceeCCccCCCC
Confidence            87766   47788999999999864

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.97  E-value=1.6e-28  Score=180.55  Aligned_cols=197  Identities=21%  Similarity=0.309  Sum_probs=156.0

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCC----CccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSG----NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQV  129 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~----~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~  129 (273)
                      .+|.+|.++.+...+.+++.|+|.+|...    .+.+.+|.|+|+..+....   .........+.+.+.+|.|++.|.|
T Consensus         3 ~P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~   79 (211)
T 3p4l_A            3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANT---KYKNANATTLSYLVTGLKPNTLYEF   79 (211)
T ss_dssp             CCCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---C---CCEEEEESSSEEEECSCCTTCEEEE
T ss_pred             CCCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcc---eEEEeCCCceEEEecCcCCCCEEEE
Confidence            45679999999999999999999987522    5678899999998654211   1123345677899999999999999


Q ss_pred             EEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCcc--CCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccc
Q psy6638         130 RLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVV--DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL  207 (273)
Q Consensus       130 ~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~--~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~  207 (273)
                      +|+|.|..|.+.++..+.+.+....|..+|.++.+..  .  +.+++.|.|++|..  .+|.+.+|.|+|+..+..... 
T Consensus        80 ~V~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~--~~~s~~sv~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~-  154 (211)
T 3p4l_A           80 SVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVS--KEGKPKTIIVNWQPPSE--ANGKITGYIIYYSTDVNAEIH-  154 (211)
T ss_dssp             EEEEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEE--ETTEEEEEEEEEECCTT--CCSCCCEEEEEEESCTTSCGG-
T ss_pred             EEEEEcCCCCCccceeEeeecccCCCCCCCcceEEEe--cCCCCCEEEEEECCCCC--CCCCEEEEEEEEEECCCCCCC-
Confidence            9999999999999998999998888877898998876  5  47899999999875  578999999999976543211 


Q ss_pred             eeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                       .+..   .........++|.+|.|++.|.|+|+|.|..|.|++|+++.+++...
T Consensus       155 -~~~~---~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~~~~  205 (211)
T 3p4l_A          155 -DWVI---EPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA  205 (211)
T ss_dssp             -GSEE---EEEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECC--
T ss_pred             -ceEE---EEecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccCccc
Confidence             1111   11223467899999999999999999999999999999999998753

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.96  E-value=2.1e-27  Score=182.95  Aligned_cols=224  Identities=17%  Similarity=0.271  Sum_probs=168.6

Q ss_pred             EEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec---CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC
Q psy6638          20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE---TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS   96 (273)
Q Consensus        20 l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~---~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~   96 (273)
                      ..+..|.++..|.|++.|.|..|.+..........   +|.++.++.+... ..++.|+|.++..   .+.+|.|+|+..
T Consensus        63 ~~~~~l~p~t~Y~~~V~A~n~~G~s~~s~~~~~~~~~~~~~p~~~~~~~~~-~~si~l~W~~p~~---~i~~Y~v~~~~~  138 (290)
T 3l5i_A           63 TKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPK-DNMLWVEWTTPRE---SVKKYILEWCVL  138 (290)
T ss_dssp             SEEEEEECSSCEEEEEEEEESSCBCCCEEEEECCTTCCCCCCCEEEEEEEE-TTEEEEEEECCSS---CCCEEEEEEEEE
T ss_pred             cEEEEEcCCceEEEEEEEEcCCCCCCCceEEeecccccCCCccceeEEEeC-CCeEEEEEeCCCC---CCCcEEEEEEEC
Confidence            35678899999999999999999876543322222   4566777776665 4799999998753   688999999876


Q ss_pred             CCCCCCcc-ceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEE
Q psy6638          97 EEMWPTQP-LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELL  175 (273)
Q Consensus        97 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~  175 (273)
                      ...-.... ...........+.+.+|.+++.|.|+|+|.|..|.+. +..+...+....|..+| .+.+..  .+.+++.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~-~~~~~~~t~~~~P~~~p-~~~~~~--~~~~sv~  214 (290)
T 3l5i_A          139 SDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGS-PESIKAYLKQAPPSKGP-TVRTKK--VGKNEAV  214 (290)
T ss_dssp             CSSSCCCCEEEEEETTCSEEECCSCCCTTCEEEEEEEEEETTEECC-CEEEEEESSCCCCSSCC-CEEEEE--ECSSCEE
T ss_pred             CCCCCCCcCeEEccCCCcceEEecCcCCccEEEEEEEEEeCCcccc-cEEEEeEccccCCCCCC-eeeEee--ccCCEEE
Confidence            54211111 1122334556777899999999999999999999877 35566667777776566 666666  7889999


Q ss_pred             EEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccE
Q psy6638         176 IKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF  255 (273)
Q Consensus       176 l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~  255 (273)
                      |+|+++.....+|.+.+|.|+|+..++.+        .... .......++|.+|++++.|.|+|+|.|..| |++|..+
T Consensus       215 l~W~~~~~~~~~g~i~~Y~v~~~~~~~~~--------~~~~-~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~~~  284 (290)
T 3l5i_A          215 LEWDQLPVDVQNGFIRNYTIFYRTIIGNE--------TAVN-VDSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEF  284 (290)
T ss_dssp             EEECCCCHHHHSSCCCEEEEEEEETTSCC--------EEEE-EETTCSEEEECSCCTTCEEEEEEEEEETTE-EEECCCE
T ss_pred             EEEcCCChhccCCEEEEEEEEEEeCCCCe--------EEEE-eCCCceEEEeCCCCCCCEEEEEEEEEeCCC-CCCCCce
Confidence            99997655446889999999999876532        1111 233457999999999999999999999999 8899999


Q ss_pred             EEEcCC
Q psy6638         256 IARTNE  261 (273)
Q Consensus       256 ~~~t~~  261 (273)
                      .|+|++
T Consensus       285 ~~~T~~  290 (290)
T 3l5i_A          285 TFTTPK  290 (290)
T ss_dssp             EEECCC
T ss_pred             EeecCC
Confidence            999964

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.96  E-value=2.6e-28  Score=179.07  Aligned_cols=198  Identities=20%  Similarity=0.212  Sum_probs=150.5

Q ss_pred             EEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCc-cceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeE
Q psy6638          50 LLVQETPEAPKNIRITEESSRSLQISWTAPYSGNT-AITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        50 ~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~-~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      +....+|.+|.++.+..... ++.|+|.++...++ ++.+|.|+|+..+. .|.............+.+.+.+|.|++.|
T Consensus         3 l~~~~~P~~P~~~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y   81 (209)
T 2vkw_A            3 LAQADTPSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTY   81 (209)
T ss_dssp             --CCCCCCCCEEEEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEE
T ss_pred             ccccCCCcCCcccEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeE
Confidence            45678899999998887766 68999999864444 59999999998653 45411100000123468899999999999


Q ss_pred             EEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccc
Q psy6638         128 QVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL  207 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~  207 (273)
                      .|+|+|.|..|.+.++..+.+.+....+|.+|..+.+..  .+.+++.|+|++|..  .++.+.+|.|+|+.....+   
T Consensus        82 ~~~V~A~n~~G~~~~s~~~~~~T~~~~~P~~P~~~~~~~--~~~~sv~l~W~~p~~--~~~~i~~Y~v~~~~~~~~~---  154 (209)
T 2vkw_A           82 AVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMG--EDGNSIKVNLIKQDD--GGSPIRHYLVRYRALSSEW---  154 (209)
T ss_dssp             EEEEEEEETTEECCCCCCEEEECCCSCSCCCCEEEEEEC--TTSSCEEEEEECCCC--TTSCCCEEEEEEEETTSCC---
T ss_pred             EEEEEEEcCCcccCCcccccccccCCCCCCCCccccccc--ccCCeEEEEEECccc--CCCCCceEEEEEECCCCCC---
Confidence            999999999999998888888887663456777888877  789999999999843  4788999999999833221   


Q ss_pred             eeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcC
Q psy6638         208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTN  260 (273)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~  260 (273)
                           ............++|.+|+|++.|.|+|+|.|..|.|++|+...+.+.
T Consensus       155 -----~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~~~  202 (209)
T 2vkw_A          155 -----KPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAA  202 (209)
T ss_dssp             -----CCCEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECC-
T ss_pred             -----ceeeecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcchhhhhhhh
Confidence                 111122334578999999999999999999999999999987776654

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.96  E-value=5e-28  Score=180.62  Aligned_cols=201  Identities=22%  Similarity=0.334  Sum_probs=159.3

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      .+|.+|.++.+...+.+++.|+|+++   ++.+.+|.|+|+..+....   .........+.+.+.+|.|++.|.|+|+|
T Consensus         4 ~p~~~P~~l~~~~~~~~si~l~W~~p---~g~i~~Y~v~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   77 (234)
T 3f7q_A            4 MDLGAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYWIQGDSES---EAHLLDSKVPSVELTNLYPYCDYEMKVCA   77 (234)
T ss_dssp             -CCCCCEEEEEEECSSSCEEEEEECC---SSCCCEEEEEEEETTSCGG---GCEEEEESSSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCCcceEEEEcCCCEEEEEEECC---CCccceEEEEEEECCCCcc---ceEEEcCCccEEEECCCCCCCEEEEEEEE
Confidence            56889999999999999999999987   3478999999987653211   12233356788999999999999999999


Q ss_pred             eCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeee
Q psy6638         134 ENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK  213 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~  213 (273)
                      .|..|.+.++..+.+.+....|. +|.++.+..  .+.+++.|.|++|..  .+|.+.+|.|+|+..+.......  .+.
T Consensus        78 ~n~~G~g~~s~~~~~~T~~~~P~-~P~~l~~~~--~~~~sv~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~~~--~~~  150 (234)
T 3f7q_A           78 YGAQGEGPYSSLVSCRTHQEVPS-EPGRLAFNV--VSSTVTQLSWAEPAE--TNGEITAYEVCYGLVNDDNRPIG--PMK  150 (234)
T ss_dssp             EETTEECCCCCCEEEECCCCCCC-CCCCCEEEE--CSSSCEEEECCCCSC--CSSCCCEEEEEEEEBCTTSCBSS--CCE
T ss_pred             EeCCCcCCCCCeEEEEcCCCCCC-CCCccEEEE--ecCCEEEEEEcCCCC--CCCceeEEEEEEEECCCCCCccC--cce
Confidence            99999999898899998877775 567888887  789999999999865  57899999999998765432111  112


Q ss_pred             eEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCc-cEEEEcCCCCCccc
Q psy6638         214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE-PFIARTNEGDFLFL  267 (273)
Q Consensus       214 ~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~-~~~~~t~~~~P~~~  267 (273)
                      ...........++|.+|+|++.|.|+|+|.|..|.|++|. .+.+.|.+.+|...
T Consensus       151 ~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~~~P~~~  205 (234)
T 3f7q_A          151 KVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSI  205 (234)
T ss_dssp             ECCCSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGSCCCCCCC
T ss_pred             EEEecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecCCCCCCCC
Confidence            2223334457899999999999999999999999999987 47788988877643

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.96  E-value=1.3e-26  Score=170.69  Aligned_cols=197  Identities=19%  Similarity=0.310  Sum_probs=148.9

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC--CCCCCccceEEe--------cCCccEEEecCCCCCC
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE--EMWPTQPLKIIV--------PGSQTSATLQPLLPAT  125 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~  125 (273)
                      +.+|.++.+...+.+++.|+|.++...++.+.+|.|+++..+  ..|.........        ......+.+.+|.+++
T Consensus         2 ~~pP~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   81 (214)
T 2ibg_A            2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQH   81 (214)
T ss_dssp             CCCCCCCEEEEEETTEEEEEEEEECCSSCCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTTC
T ss_pred             CCCCCCCEeeEecCCEEEEEEECCCCCCCCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCCC
Confidence            457777778888999999999988766678999999999853  456432221110        0234678899999999


Q ss_pred             eEEEEEEEeCCCCCCCCCc-ceEEEecC---CCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcC
Q psy6638         126 QYQVRLLAENPLGMSETGA-ELQASTLE---EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISS  201 (273)
Q Consensus       126 ~y~~~v~a~~~~g~~~~s~-~~~~~~~~---~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~  201 (273)
                      .|.|+|+|.|..|.+..+. ...+.+..   ..++.+|.++.+..  .+.+++.|.|+++. ...++.+.+|.|+|+..+
T Consensus        82 ~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~--~~~~sv~l~W~~p~-~~~~~~i~~Y~v~~~~~~  158 (214)
T 2ibg_A           82 TYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEE--YSETAVVLHWSLAS-DADEHLITGYYAYYRPSS  158 (214)
T ss_dssp             EEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBC--CSSSCEEEEEECCT-TCCGGGCCEEEEEEEETT
T ss_pred             EEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEE--ccCCeEEEEEeCCC-ccCCCCcceEEEEEEECC
Confidence            9999999999988765554 23333332   23445688888877  78899999999997 224788999999999876


Q ss_pred             CCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         202 GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      ...      .+............++|.+|+|++.|.|+|+|+|..|.|++|+.+.++|.+
T Consensus       159 ~~~------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~  212 (214)
T 2ibg_A          159 SAG------EYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR  212 (214)
T ss_dssp             CCS------CCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEECCC
T ss_pred             CCc------ceEEeeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEecC
Confidence            521      123333334445789999999999999999999999999999999999975

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.95  E-value=1.7e-26  Score=170.19  Aligned_cols=198  Identities=18%  Similarity=0.273  Sum_probs=151.3

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCC-CCCCeEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPL-LPATQYQVRL  131 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~y~~~v  131 (273)
                      ..+|.+|.++.+.......+.|+|.++...+. ...|.|+++.....+.   .........+.+.+.+| .+++.|.|+|
T Consensus         5 g~pP~~P~~l~~~~~~~~sv~l~W~~p~~~~~-~~~Y~v~~~~~~~~~~---~~~~~~~~~~~~~i~~L~~~~t~Y~~~V   80 (215)
T 1bqu_A            5 GLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFA---DCKAKRDTPTSCTVDYSTVYFVNIEVWV   80 (215)
T ss_dssp             CCCCCCCEEEEEEEETTSCCEEEEECCSCCSS-CCEEEEEEEETTEECC---CEECCSSCTTEEECSSCCCTTSCEEEEE
T ss_pred             CCCCCCCEeeEeEECCCCcEEEEcCCCCCCCC-CceEEEEEEEcCCCcc---ccccccCCcceEEEcCCccccccEEEEE
Confidence            46789999999888888899999999875443 4699999987643322   12223445678999999 9999999999


Q ss_pred             EEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCcc--CCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCcccee
Q psy6638         132 LAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVV--DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS  209 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~--~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~  209 (273)
                      .|.|..|.+. +....+.+....++.+|.++.+..  .  +.+++.|+|++|..  .++.+.+|.|+|+..+...     
T Consensus        81 ~A~n~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~--~~~~~~sv~l~W~~p~~--~~~~i~~Y~v~y~~~~~~~-----  150 (215)
T 1bqu_A           81 EAENALGKVT-SDHINFDPVYKVKPNPPHNLSVIN--SEELSSILKLTWTNPSI--KSVIILKYNIQYRTKDAST-----  150 (215)
T ss_dssp             EEEETTEEEE-CCCEEECGGGSEECCCCEEEEEEC--C--CCSCEEEEEECCGG--GGTSCEEEEEEEEETTCSS-----
T ss_pred             EEEecccCcc-CCcEEecccccCcCCCCCceEEEE--ecCCCceEEEEEeCCCC--CCcceEEEEEEEccCCCCC-----
Confidence            9999998765 444556555555667888888865  4  67899999999876  4678999999999876432     


Q ss_pred             eeeeeEEe--cCCcccEEEcCCCCccceEEEEEEEecCCCcCC---CCccEEEEcCCCCCcc
Q psy6638         210 YTLKSVEL--DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP---FSEPFIARTNEGDFLF  266 (273)
Q Consensus       210 ~~~~~~~~--~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~---~s~~~~~~t~~~~P~~  266 (273)
                        +.....  .......++|.+|.|++.|.|+|+|.|..|.|.   +|+.+.++|.+++|..
T Consensus       151 --~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~~~P~~  210 (215)
T 1bqu_A          151 --WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK  210 (215)
T ss_dssp             --CEECCGGGGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECCCHHHH
T ss_pred             --ceEeccccccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccccccccCCcC
Confidence              122211  133457899999999999999999999988855   6778889999988753

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.95  E-value=1.1e-27  Score=195.79  Aligned_cols=221  Identities=19%  Similarity=0.250  Sum_probs=159.2

Q ss_pred             eeeeCCCEEEEEEEEcCCCCcee-EEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCc-cceEEEEEEEeCCC---
Q psy6638          24 NVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNT-AITQYIIQYKSSEE---   98 (273)
Q Consensus        24 ~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~-~~~~y~v~~~~~~~---   98 (273)
                      +....+.|.|.|.|.|.+|.... ........+|.+|.++. ...+.+++.|+|.+|...++ ++..|.|+++..+.   
T Consensus       301 ~S~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~nl~-~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~~  379 (536)
T 3fl7_A          301 HTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLT-AVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESG  379 (536)
T ss_dssp             SEECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSCEE-EECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-CC
T ss_pred             CCCCCCCCccEEEEeccccccCCCccccccccCCCcccceE-EEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCCC
Confidence            45567789999999999987765 23334467899999984 46788999999999875444 78999999987422   


Q ss_pred             CCCC--ccce---EEecCCccEEEecCCCCCCeEEEEEEEeCCCCC---CCCCcceEEEecCCCCCCCCeeEEecCCccC
Q psy6638          99 MWPT--QPLK---IIVPGSQTSATLQPLLPATQYQVRLLAENPLGM---SETGAELQASTLEEAPNGAPREVTSDPGVVD  170 (273)
Q Consensus        99 ~~~~--~~~~---~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~---~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~  170 (273)
                      .|..  ....   .......+.+.+.+|.|++.|.|+|+|.|..|.   +..+..+.+.+.+.+|    ..+.+..  .+
T Consensus       380 ~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~P----s~~~~~~--~s  453 (536)
T 3fl7_A          380 ECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEP----PKVRLEG--RS  453 (536)
T ss_dssp             CEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCCC----CEEEEEE--CC
T ss_pred             cccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeecccCC----CCCceee--cc
Confidence            1100  0000   112235678999999999999999999998886   3345556666655444    3444444  68


Q ss_pred             CceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638         171 PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       171 ~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                      .+++.|+|++|..  .++.|.+|.|+|+..+...      ....   .......++|.+|+|++.|.|+|+|.|..|.|+
T Consensus       454 ~tSV~LsW~pP~~--~ng~I~~Y~V~y~~~~~~~------~~~~---v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp  522 (536)
T 3fl7_A          454 TTSLSVSWSIPPP--QQSRVWKYEVTYRKKGDSN------SYNV---RRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGA  522 (536)
T ss_dssp             C-CCEEEEECCTT--TTTTCSEEEEEEEEC--CC------CCEE---EEESSSEEECCSCCSSCEEEEEEEEECC---CE
T ss_pred             CCeEEEEEECCcC--CCCcccEEEEEEEECCCCc------eEEE---EcCCCCEEEECCCCCCCEEEEEEEEEcCCcccC
Confidence            8999999999865  5789999999999876431      1111   122357899999999999999999999999999


Q ss_pred             CCccEEEEcCCC
Q psy6638         251 FSEPFIARTNEG  262 (273)
Q Consensus       251 ~s~~~~~~t~~~  262 (273)
                      +|+.+.++|.++
T Consensus       523 ~S~~v~~~T~~~  534 (536)
T 3fl7_A          523 GSKVHEFQTLSP  534 (536)
T ss_dssp             ECCCEEEECCC-
T ss_pred             CCCCEEEEeCCC
Confidence            999999999754

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.95  E-value=1e-26  Score=200.36  Aligned_cols=243  Identities=20%  Similarity=0.254  Sum_probs=179.4

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEE--cCCCCceeEEEEEE----ecCCCCCcceEEEEeeccEEEEEEeCCCC--CCccceE
Q psy6638          17 ISELGIANVLRQDSGTLSCLAT--NYHGTAEMTIQLLV----QETPEAPKNIRITEESSRSLQISWTAPYS--GNTAITQ   88 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~--n~~g~~~~~~~~~~----~~~P~~p~~~~~~~~~~~~~~l~W~~~~~--~~~~~~~   88 (273)
                      ..++.|.+|.+.+.|.|+|.|.  |..|.+..+..+.+    ..+|.+|.++.+...+.+++.|+|.++..  ..+.+.+
T Consensus       315 ~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~  394 (731)
T 2v5y_A          315 STSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYN  394 (731)
T ss_dssp             SSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCE
T ss_pred             cceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECCCcccccceeee
Confidence            3589999999999999999999  99998764332333    34557899999999999999999998753  2456789


Q ss_pred             EEEEEEeCCC-CCCCccc-eEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCC-eeEEec
Q psy6638          89 YIIQYKSSEE-MWPTQPL-KIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAP-REVTSD  165 (273)
Q Consensus        89 y~v~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p-~~~~~~  165 (273)
                      |.|+|+.... .+..... ..........+.+.+|.|++.|.|+|+|.|..|.+. +..+.+.+....|..+| ..+...
T Consensus       395 y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~~~P~~p~~~~~~~~  473 (731)
T 2v5y_A          395 LTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDLPGAVPTESIQGS  473 (731)
T ss_dssp             EEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECCCCCCCCCCTTTCEEE
T ss_pred             EEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEccCCCCCCCCcceEEee
Confidence            9999987542 2110000 112334567899999999999999999999999874 77888888887776554 345443


Q ss_pred             CCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecC
Q psy6638         166 PGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS  245 (273)
Q Consensus       166 ~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  245 (273)
                      .   ..+++.|+|++|..  .+|.|.+|.|+|+..+.......................++|.+|+|++.|.|+|+|+|.
T Consensus       474 ~---~~~si~l~W~~P~~--~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~  548 (731)
T 2v5y_A          474 T---FEEKIFLQWREPTQ--TYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTA  548 (731)
T ss_dssp             E---ETTEEEEECCCCSC--CSSCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEET
T ss_pred             e---cCCeEEEEEcCCCC--CCCCccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEEEEEEEeC
Confidence            2   46799999999865  578999999999986532111000000111112333578999999999999999999999


Q ss_pred             CCcCCCCccEEEEcCCCCCcc
Q psy6638         246 VGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       246 ~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      .|.|+++ .+.+.|.+++|+.
T Consensus       549 ~G~g~~s-~~~~~T~~~~P~~  568 (731)
T 2v5y_A          549 KGFGPPA-TNQFTTKISAPSM  568 (731)
T ss_dssp             TEEEEEE-EEEEECCCCCCCC
T ss_pred             CccCCCc-ccEEEcCCCCCCC
Confidence            9999888 4888998887764

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.95  E-value=5.7e-26  Score=165.00  Aligned_cols=187  Identities=22%  Similarity=0.405  Sum_probs=146.1

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..+|.+|.++.+.......+.|+|.++.. ++.++.+|.|+++..+. .|.    ........+.+.+.+|.+++.|.|+
T Consensus         3 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~----~~~~~~~~~~~~~~~L~p~t~Y~~~   78 (197)
T 3lpw_A            3 MDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYS----TVATNCHKTSWKVDQLQEGCSYYFR   78 (197)
T ss_dssp             CCSCCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCE----EEEEEECSSEEEECCCCTTCEEEEE
T ss_pred             CCCCCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccE----EeecCCCccEEEEcCCCCCCEEEEE
Confidence            46899999999998999999999999853 34458899999998654 333    2233446788999999999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceee
Q psy6638         131 LLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSY  210 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~  210 (273)
                      |+|.+..|.+.++....+.+....| .+|.++.+..  .+.+++.|.|++|.... ++.+.+|.|+|+..+...+     
T Consensus        79 V~a~~~~g~~~~s~~~~~~t~~~~p-~~p~~~~~~~--~~~~~v~l~W~~p~~~~-~~~i~~Y~v~~~~~~~~~~-----  149 (197)
T 3lpw_A           79 VLAENEYGIGLPAETAESVKASERP-LPPGKITLMD--VTRNSVSLSWEKPEHDG-GSRILGYIVEMQTKGSDKW-----  149 (197)
T ss_dssp             EEEEETTEECCCEECSSCEESCCCC-CCCSCEEEEE--ECSSCEEEEECCCSCCT-TSCCCEEEEEEEETTCSCC-----
T ss_pred             EEEEcCccccCCCCCccceecCCCC-CCCcccEEEe--ccCCeEEEEecCCCcCC-CCcccEEEEEEEeCCCCce-----
Confidence            9999999988877665566655544 5777888877  78899999999987632 3488999999998765431     


Q ss_pred             eeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEE
Q psy6638         211 TLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFI  256 (273)
Q Consensus       211 ~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~  256 (273)
                        ....  ......+++.+|.|++.|.|+|+|.|..|.|++|+...
T Consensus       150 --~~~~--~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~  191 (197)
T 3lpw_A          150 --ATCA--TVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSV  191 (197)
T ss_dssp             --EEEE--EESSSEEEECCCCTTCEEEEEEEEEETTEECCCEECSS
T ss_pred             --EEee--cccccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCcc
Confidence              1111  12357899999999999999999999999998876543

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.95  E-value=5.1e-25  Score=169.63  Aligned_cols=213  Identities=22%  Similarity=0.300  Sum_probs=163.3

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEE-EEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTI-QLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~-~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      +..+.+.|.+|.++..|.|++.|.|..|.+.... .+.....|.+|.++.+.....+++.|+|.++   ++.+.+|.|++
T Consensus        71 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~t~~~~~~P~~l~~~~~~~~sv~l~W~~p---~~~~~~Y~v~~  147 (290)
T 3r8q_A           71 PDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTK---TETITGFQVDA  147 (290)
T ss_dssp             TTCCEEEECSCCSSCEEEEEEEEEETTEECCCEEEEEECCCCCCCCEEEEEEEECSSCEEEEEECC---SCCCCEEEEEE
T ss_pred             CCccEEEeCCCCCCCEEEEEEEEEeCCCCCCCcceeEecCCCCCCCceeEEEEcCCCeEEEEEeCC---CCcccEEEEEE
Confidence            3456899999999999999999999888766542 2222344678899999988999999999987   34688999999


Q ss_pred             EeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCce
Q psy6638          94 KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTE  173 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~  173 (273)
                      +..+....   .........+.+.+.+|.+++.|.|+|+|.+..|.+.... +...+    ++.+|.++.+..  .+.++
T Consensus       148 ~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~-~~~~t----~p~~P~~l~~~~--~~~~s  217 (290)
T 3r8q_A          148 VPANGQTP---IQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVV-IDAST----AIDAPSNLRFLA--TTPNS  217 (290)
T ss_dssp             EESSSCCC---EEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEEC----CCCCCEEEEEEE--EETTE
T ss_pred             EECCCCcc---eEEecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCEE-EEecC----CCCCCCccEEEe--eCCCE
Confidence            98654321   2334555678899999999999999999999888765422 33333    234777898887  78999


Q ss_pred             EEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCC
Q psy6638         174 LLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS  252 (273)
Q Consensus       174 i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s  252 (273)
                      +.|+|++|.     +.+.+|.|+|+..+...       .............+++.+|.|++.|.|+|+|++..|.|++.
T Consensus       218 v~l~W~~p~-----~~~~~Y~v~~~~~~~~~-------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  284 (290)
T 3r8q_A          218 LLVSWQPPR-----ARITGYIIKYEKPGSPP-------REVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL  284 (290)
T ss_dssp             EEEEEECCS-----SCCCEEEEEEECTTSCC-------EECSSCCCTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             EEEEEeCCC-----CcccEEEEEEEeCCCCc-------ceeEeccCCCccEEEECCCCCCCEEEEEEEEEeCCCcCCcc
Confidence            999999975     36789999999876532       11111223346799999999999999999999999988653

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.95  E-value=7.5e-25  Score=168.11  Aligned_cols=211  Identities=19%  Similarity=0.278  Sum_probs=163.0

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      +..+.+.|.+|.++..|.|++.|.|..|.+. ........+|.+|.++.+.....+++.|+|.++.   +.+.+|.|+++
T Consensus        65 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~-~~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~  140 (283)
T 1tdq_A           65 PPLSQYSVQALRPGSRYEVSISAVRGTNESD-ASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSE---AEAQEYKVVYS  140 (283)
T ss_dssp             TTCSEEEECSCCTTCEEEEEEEEEETTEECC-CEEEEEECCCCCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEE
T ss_pred             CCCCEEEecCCCCCCEEEEEEEEECCCCCCC-CeeEEEECCCCCCCceEEEecCCCeEEEEecCCC---CCccEEEEEEE
Confidence            3456899999999999999999999877654 3445567789999999999889999999999875   46889999999


Q ss_pred             eCCCCCCCccceEEecCC---ccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCC
Q psy6638          95 SSEEMWPTQPLKIIVPGS---QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP  171 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~  171 (273)
                      ..++...   ........   ...+.+.+|.+++.|.|+|+|.+..|.+..   ..+.... .| .+|.++.+..  .+.
T Consensus       141 ~~~~~~~---~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~---~~~~~~t-~~-~~P~~l~~~~--~~~  210 (283)
T 1tdq_A          141 TLAGEQY---HEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIP---ATMNART-EL-DSPRDLMVTA--SSE  210 (283)
T ss_dssp             ETTCCCC---EEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCC---EEEEEEC-CC-CCCEEEEEEE--ECS
T ss_pred             eCCCCcc---eEEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcc---eEEEecC-CC-CCCCccEEeE--ecC
Confidence            8654211   12334344   678999999999999999999998886643   2222222 23 3677888877  788


Q ss_pred             ceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCC
Q psy6638         172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPF  251 (273)
Q Consensus       172 ~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~  251 (273)
                      +++.|.|+++     ++.+.+|.|+|+..++..        .... .......++|.+|.|++.|.|+|+|.|..|.|+.
T Consensus       211 ~sv~l~W~~p-----~~~i~~Y~v~~~~~~~~~--------~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~  276 (283)
T 1tdq_A          211 TSISLIWTKA-----SGPIDHYRITFTPSSGIS--------SEVT-VPRDRTSYTLTDLEPGAEYIISITAERGRQQSLE  276 (283)
T ss_dssp             SCEEEEEECC-----CSCCSEEEEEEECSSSCC--------EEEE-EESSCSEEEECCCCTTCCEEEEEEEEETTEECCC
T ss_pred             CEEEEEEeCC-----CCcccEEEEEEEcCCCCe--------eEEE-eCCCccEEEECCCCCCCEEEEEEEEEcCCCCCcc
Confidence            9999999996     356889999999875432        1111 2233578999999999999999999999998876


Q ss_pred             Cc
Q psy6638         252 SE  253 (273)
Q Consensus       252 s~  253 (273)
                      +.
T Consensus       277 ~~  278 (283)
T 1tdq_A          277 ST  278 (283)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.94  E-value=1.8e-24  Score=172.54  Aligned_cols=231  Identities=16%  Similarity=0.199  Sum_probs=177.0

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEe
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS   95 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~   95 (273)
                      ..+.+.|.+|.++..|.|++.|.|..|.+...........| +|.++.+...+.+++.|+|.++.  ++.+.+|.|+++.
T Consensus        57 ~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~p-~p~~l~~~~~~~~si~l~W~~~~--~~~i~~Y~v~~~~  133 (375)
T 3t1w_A           57 DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVP-QLTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVA  133 (375)
T ss_dssp             TCCEEEECCCCTTCCEEEEEEEEETTEECCCEEEEECCCCC-CCSCCEEECCCSSEEEEECCCCC--CTTEEEEEEEEEE
T ss_pred             CccEEEEcCCcCCCEEEEEEEEEcCCCCCCcEEeeEcCCCC-CCceEEEEecCCCeEEEEEECCC--CCCceEEEEEEEE
Confidence            45689999999999999999999987765544333334455 58889888889999999999874  3578999999998


Q ss_pred             CCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEE
Q psy6638          96 SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELL  175 (273)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~  175 (273)
                      .+..+.  ..........+.+.+.+|.+++.|.|+|+|.+..|.+.++. ....+   .++ +|.++.+..  .+.+++.
T Consensus       134 ~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~t---~~~-~p~~l~~~~--~~~~si~  204 (375)
T 3t1w_A          134 AGEGIP--IFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTT-LTQQT---AVP-PPTDLRFTN--IGPDTMR  204 (375)
T ss_dssp             SSSCCS--CEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEE-EEEEC---CCC-CCEEEEEES--CCSSCEE
T ss_pred             CCCCCc--eeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCee-eeeec---CCC-CCceeEEEe--cccCEEE
Confidence            654322  12234555678899999999999999999999999877655 33443   333 778899887  7899999


Q ss_pred             EEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccE
Q psy6638         176 IKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF  255 (273)
Q Consensus       176 l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~  255 (273)
                      |.|+++.    ++.+.+|.|+|+..+....      +..... ......+++.+|.+++.|.|+|+|+|..|.|.++ ..
T Consensus       205 l~W~~p~----~~~i~~Y~v~~~~~~~~~~------~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~-~~  272 (375)
T 3t1w_A          205 VTWAPPP----SIDLTNFLVRYSPVKNEED------VAELSI-SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL-RG  272 (375)
T ss_dssp             EEEECCS----SCCCCEEEEEEEEGGGTTC------CEEEEE-CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE-EE
T ss_pred             EEEcCCC----CCCccEEEEEEEeCCCCCC------cEEEEc-CCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCce-ee
Confidence            9999974    3568899999998764321      122222 2335799999999999999999999999988765 46


Q ss_pred             EEEcCCCCCcccccc
Q psy6638         256 IARTNEGDFLFLFCA  270 (273)
Q Consensus       256 ~~~t~~~~P~~~~~~  270 (273)
                      .+.|.+.+|..+...
T Consensus       273 ~~~t~p~~P~~l~~~  287 (375)
T 3t1w_A          273 RQKTGLDSPTGIDFS  287 (375)
T ss_dssp             EEECCCCCCEEEEEE
T ss_pred             EEecCCCCCCccEee
Confidence            678888888776653

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.94  E-value=2.6e-24  Score=171.18  Aligned_cols=231  Identities=15%  Similarity=0.206  Sum_probs=172.9

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      +..+.+.|.+|.++..|.|++.|.|..|.+... ...+...|.+|.++.+.......+.|+|.++.  ++.+.+|.|+++
T Consensus        55 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~-~~~~~~~~~~p~~l~~~~~~~~si~l~W~~p~--~~~~~~Y~v~~~  131 (368)
T 1fnf_A           55 ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPI-SDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYS  131 (368)
T ss_dssp             TTCCEEECCCCCTTSCEEEEEEEEETTEECCCE-EEEECCCCCCCEEEEEESCCSSCEEEEEECCT--TCCCSEEEEEEE
T ss_pred             CCcCEEEECCCCCCCEEEEEEEEEcCCCccCce-eeeecCCCcCCceeEEEEcCCCeEEEEeeCCC--CCCCcEEEEEEE
Confidence            345688999999999999999999988765443 22334444588899888888999999999884  357889999999


Q ss_pred             eCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceE
Q psy6638          95 SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL  174 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i  174 (273)
                      .......  ............+.+.+|.+++.|.|+|+|.+..|.+.+.   ....  ..++.+|.++.+..  .+.+++
T Consensus       132 ~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~---~~~~--~~~~~~P~~l~~~~--~~~~sv  202 (368)
T 1fnf_A          132 PVKNEED--VAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL---RGRQ--KTGLDSPTGIDFSD--ITANSF  202 (368)
T ss_dssp             ETTCTTC--CEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE---EEEE--ECCCCCCEEEEEES--CCSSEE
T ss_pred             ECCCCCc--cEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCe---Eeee--cCCCCCCCccEEEE--ccCCEE
Confidence            7543211  1123345567889999999999999999999998866542   2222  13345778898888  889999


Q ss_pred             EEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCcc
Q psy6638         175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP  254 (273)
Q Consensus       175 ~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~  254 (273)
                      .|.|+++.     +.+.+|.|+|+..+....      ..... .......+++.+|.|++.|.|+|+|.|..|.|+++ .
T Consensus       203 ~l~W~~p~-----~~i~~Y~v~~~~~~~~~~------~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~-~  269 (368)
T 1fnf_A          203 TVHWIAPR-----ATITGYRIRHHPEHFSGR------PREDR-VPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL-I  269 (368)
T ss_dssp             EEEEECCS-----SCCSEEEEEEECSCCSSC------CEEEE-EETTCCEEEEESCCTTCEEEEEEEEEETTEECCCE-E
T ss_pred             EEEEeCCC-----CCcCEEEEEEecCCCCCC------ccEEE-eCCCcCEEEECCCCCCCEEEEEEEEEeCCccCCcc-c
Confidence            99999974     468899999987654221      11111 22335789999999999999999999999998776 3


Q ss_pred             EEEEcCCCCCcccccc
Q psy6638         255 FIARTNEGDFLFLFCA  270 (273)
Q Consensus       255 ~~~~t~~~~P~~~~~~  270 (273)
                      ....+.+++|..+...
T Consensus       270 ~~~~t~p~~P~~l~~~  285 (368)
T 1fnf_A          270 GQQSTVSDVPRDLEVV  285 (368)
T ss_dssp             EEEECCCCSCEEEEEE
T ss_pred             ccccCCCCCCCeeEEE
Confidence            5677888888776553

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.94  E-value=4.8e-24  Score=166.64  Aligned_cols=228  Identities=16%  Similarity=0.211  Sum_probs=162.8

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEE-eeccEEEEEEeCCCCCCccceEEEEEEEeC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITE-ESSRSLQISWTAPYSGNTAITQYIIQYKSS   96 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~-~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~   96 (273)
                      ..|.|.++.+.|.|.|+|.   ..|.....+.+.+..+|..|. +.... .....+.|.|.++.+++ ....|.+.++..
T Consensus        60 ~~L~i~~v~~~d~G~Y~C~---~~g~~~~~~~L~V~~pP~~P~-l~c~~~~~~~~~~c~W~~~~~~~-~~~~y~l~~~~~  134 (325)
T 1n26_A           60 RRLLLRSVQLHDSGNYSCY---RAGRPAGTVHLLVDVPPEEPQ-LSCFRKSPLSNVVCEWGPRSTPS-LTTKAVLLVRKF  134 (325)
T ss_dssp             SEEEECSCCGGGCEEEEEE---SSSSCSCEEEEEECCCCCCCC-CEEEBSSTTSCEEEEECCSSCCC-TTCEEEEEEEEE
T ss_pred             ceEEecccchhhCeEeEEE---eCCEEeeeEEEEeccCCCCCc-eeEEeecCCCcEEEEECCCCCCC-CCceEEEEEEEc
Confidence            3799999999999999999   367777788999999999988 65542 33668999999876544 346899988754


Q ss_pred             CCCCCCc--cceEE-ecCCccEEEecCCC-CCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccC--
Q psy6638          97 EEMWPTQ--PLKII-VPGSQTSATLQPLL-PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVD--  170 (273)
Q Consensus        97 ~~~~~~~--~~~~~-~~~~~~~~~~~~l~-~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~--  170 (273)
                      .+.....  ..+.. ......++.+..+. ++..|.|+|.|.|..|.+. +....+......++.+|.++.+..  ..  
T Consensus       135 ~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~-s~~~~~~~~~~v~P~pP~~l~v~~--~~~~  211 (325)
T 1n26_A          135 QNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKF-SKTQTFQGCGILQPDPPANITVTA--VARN  211 (325)
T ss_dssp             SSSSCEEEEEEEEEETTTTEEEEEECCCTTCCCEEEEEEEEEETTEEEE-CCCEEEETTTCBCCCCCEEEEEEE--CTTC
T ss_pred             cCCCCCcccccCCCCCCCCCEEEEECCCcccCcEEEEEEEEEcCCCCcc-cCcEEEeeccccCCCCCcceEEEE--ecCC
Confidence            2110000  01111 12334567787765 7899999999999998653 344555555556677898888876  43  


Q ss_pred             CceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638         171 PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       171 ~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                      ++++.|+|++|.....++.+++|.|+|+..+...       |..... ......++|.+|.|++.|.|+|+|.|..|.|.
T Consensus       212 ~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~~~~-------W~~~~~-~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~  283 (325)
T 1n26_A          212 PRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKT-------FTTWMV-KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGE  283 (325)
T ss_dssp             TTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSC-------CEEEEC-GGGCSEEEESSCCTTCCEEEEEEEEETTTBSC
T ss_pred             CCEEEEEECCCCccCCCcEeEEEEEEEEeCCCCC-------CEEEcc-cCCceEEEEeCCCCCCeEEEEEEEecCCCCCC
Confidence            4699999999976433567899999999876432       222222 23357899999999999999999999888665


Q ss_pred             C---CccEEEEcCC
Q psy6638         251 F---SEPFIARTNE  261 (273)
Q Consensus       251 ~---s~~~~~~t~~  261 (273)
                      +   |+.+.+.|..
T Consensus       284 ~S~wS~~~~~~~~~  297 (325)
T 1n26_A          284 WSEWSPEAMGTPWT  297 (325)
T ss_dssp             CCCCCCCEEECCCC
T ss_pred             CcCCCCccceecCC
Confidence            5   5556665533

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.94  E-value=3.4e-24  Score=170.48  Aligned_cols=213  Identities=25%  Similarity=0.331  Sum_probs=164.3

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEe
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS   95 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~   95 (273)
                      ....+.|.+|.++..|.|++.|.|..|.+.. .......+|.+|.++.+.....+.+.|+|.++.   +.+.+|.|+++.
T Consensus       147 ~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~-~~~~~~~~~~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~  222 (368)
T 1fnf_A          147 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTP-LRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR---ATITGYRIRHHP  222 (368)
T ss_dssp             TCCEEEECSCCTTCEEEEEEEEEETTEECCC-EEEEEECCCCCCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEEC
T ss_pred             CcceEEecCCCCCCEEEEEEEEEeCCCCCCC-eEeeecCCCCCCCccEEEEccCCEEEEEEeCCC---CCcCEEEEEEec
Confidence            4568999999999999999999998876543 334456678889999888888999999999873   468899999987


Q ss_pred             CCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEE
Q psy6638          96 SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELL  175 (273)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~  175 (273)
                      ......  ......+...+.+.+.+|.+++.|.|+|+|.+..|.+.++. ...    ..++.+|.++.+..  .+.+++.
T Consensus       223 ~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~-~~~----~t~p~~P~~l~~~~--~~~~sv~  293 (368)
T 1fnf_A          223 EHFSGR--PREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI-GQQ----STVSDVPRDLEVVA--ATPTSLL  293 (368)
T ss_dssp             SCCSSC--CEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEE-EEE----ECCCCSCEEEEEEE--EETTEEE
T ss_pred             CCCCCC--ccEEEeCCCcCEEEECCCCCCCEEEEEEEEEeCCccCCccc-ccc----cCCCCCCCeeEEEe--cCCCEEE
Confidence            643211  12344556778899999999999999999999988766543 222    23445778888877  7889999


Q ss_pred             EEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCc
Q psy6638         176 IKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE  253 (273)
Q Consensus       176 l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~  253 (273)
                      |.|+++..     .+.+|.|+|+..++...      ..... .......+++.+|++++.|.|+|+|.|..|.|+++.
T Consensus       294 l~W~~p~~-----~i~~Y~v~~~~~~~~~~------~~~~~-~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~g~~s~  359 (368)
T 1fnf_A          294 ISWDAPAV-----TVRYYRITYGETGGNSP------VQEFT-VPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASS  359 (368)
T ss_dssp             EEEECCSS-----CCSEEEEEEEETTCCSC------CEEEE-EETTCCEEEECSCCTTCCEEEEEEEECCCSSSCCBC
T ss_pred             EEeeCCCC-----ccceEEEEEEECCCCCc------cEEEE-cCCCeeEEEecCCCCCCEEEEEEEEeCCCCcCcccC
Confidence            99999864     47899999998765321      11111 223457899999999999999999999999998875

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.94  E-value=1.7e-24  Score=184.63  Aligned_cols=224  Identities=18%  Similarity=0.308  Sum_probs=162.2

Q ss_pred             CCEEEEEEEEcCCCCceeEEEEEEecCCCCC-cceEEEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCC---------
Q psy6638          29 DSGTLSCLATNYHGTAEMTIQLLVQETPEAP-KNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSE---------   97 (273)
Q Consensus        29 ~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p-~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~---------   97 (273)
                      ..|.+.| +.|..|..-......+...|.+| .++.+...+.+++.|+|.++.+ +..++. |.|+++...         
T Consensus       134 c~g~~~C-c~n~cG~~C~~P~~~~~~~P~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~~~~~  211 (680)
T 1zlg_A          134 CSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPSEDDA  211 (680)
T ss_pred             CCCcccc-ccccccccccccceeeecccccccccceEEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcCcccc
Confidence            3455566 56777764333333457889989 7999999999999999998853 345666 999998752         


Q ss_pred             CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC-CCCCCcceEEEecCC-CCCCCCeeEEecCCcc--CCc-
Q psy6638          98 EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG-MSETGAELQASTLEE-APNGAPREVTSDPGVV--DPT-  172 (273)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g-~~~~s~~~~~~~~~~-~p~~~p~~~~~~~~~~--~~~-  172 (273)
                      ..|..     ......+.+.+.+|.|++.|.|+|.|.|..| .+..+....+.+... .|+.+|.++.+..  .  +.+ 
T Consensus       212 ~~w~~-----v~~~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~--~~~~~~g  284 (680)
T 1zlg_A          212 THWQT-----VAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLAN--STVNSDG  284 (680)
T ss_pred             CceEE-----EEecCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeee--eeecCCC
Confidence            23431     1223456789999999999999999999988 444444455666544 5677888998877  6  677 


Q ss_pred             --eEEEEEeCCCCCCccceeeeEEEEEEEc-CCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcC
Q psy6638         173 --ELLIKWKAPPRESWNGVLLGYDVGYQIS-SGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG  249 (273)
Q Consensus       173 --~i~l~W~~~~~~~~~~~i~~y~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~  249 (273)
                        ++.|.|++|..  .++.|.+|.|+|+.. +... ......+.... .......++|.+|.|++.|.|+|+|+|..|.|
T Consensus       285 ~~sv~l~W~pP~~--~~g~i~~Y~V~~~~~~~~~~-~~~~~~~~~~~-v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g  360 (680)
T 1zlg_A          285 SVTVTIVWDLPEE--PDIPVHHYKVFWSWMVSSKS-LVPTKKKRRKT-TDGFQNSVILEKLQPDCDYVVELQAITYWGQT  360 (680)
T ss_pred             ceEEEEEecCCCC--CCCceeEEEEEEEecccccc-cCCccceEEEE-EcCCeeEEEeCCCCCCCEEEEEEEEEECCCcC
Confidence              99999999875  478999999999832 1110 00000122222 22335789999999999999999999999999


Q ss_pred             CCCcc---EEEEcCCCCCc
Q psy6638         250 PFSEP---FIARTNEGDFL  265 (273)
Q Consensus       250 ~~s~~---~~~~t~~~~P~  265 (273)
                      +++..   +.+.|.+++|.
T Consensus       361 ~~S~~~~~v~~~T~~~~P~  379 (680)
T 1zlg_A          361 RLKSAKVSLHFTSTHATNN  379 (680)
T ss_pred             CCCCCceeEEEECCCCCCC
Confidence            98887   88899887765

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.93  E-value=4.5e-24  Score=153.57  Aligned_cols=183  Identities=19%  Similarity=0.344  Sum_probs=134.3

Q ss_pred             EecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        52 ~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      ...+|.+|.++++...+.+++.|+|.++.   +.+.+|.|+++...+.+    ...........+.+.+|.|++.|.|+|
T Consensus         3 ~~t~p~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~~~~~~----~~~~~~~~~~~~~i~~L~p~t~Y~~~V   75 (186)
T 1qr4_A            3 AGTDLDNPKDLEVSDPTETTLSLRWRRPV---AKFDRYRLTYVSPSGKK----NEMEIPVDSTSFILRGLDAGTEYTISL   75 (186)
T ss_dssp             -----CCCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEECTTCCE----EEEEECTTCSEEEEESCCSSCEEEEEE
T ss_pred             ccCCCcCCCceEEEecCCCEEEEEEeCCC---CCccEEEEEEEeCCCCe----eEEECCCCCCEEEECCCCCCCEEEEEE
Confidence            35679999999999999999999999873   36789999998654322    233455567889999999999999999


Q ss_pred             EEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeee
Q psy6638         132 LAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYT  211 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~  211 (273)
                      +|.+..|.+.+ ..+.+.+.    +.+|.++.+..  .+.+++.|+|++|.     +.+.+|.|+|+..+....      
T Consensus        76 ~a~~~~~~s~~-~~~~~~t~----p~~P~~l~~~~--~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~~~~~------  137 (186)
T 1qr4_A           76 VAEKGRHKSKP-TTIKGSTV----VGSPKGISFSD--ITENSATVSWTPPR-----SRVDSYRVSYVPITGGTP------  137 (186)
T ss_dssp             EEESSSCBCCC-EEEEEECC----CCCCSCEEEES--CCSSCEEEEECCCS-----SCCSEEEEEEEETTCCCC------
T ss_pred             EEEcCCccCCC-EEEEEECC----CCCCCccEEEE--eCCCEEEEEEECCC-----CcccEEEEEEEeCCCCCc------
Confidence            99997665543 22344442    34677888887  88999999999874     458899999998764221      


Q ss_pred             eeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       212 ~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                       .... .......++|.+|+|++.|.|+|+|.|..|.|++. ...+.|.++
T Consensus       138 -~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~-~~~~~T~pd  185 (186)
T 1qr4_A          138 -NVVT-VDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPI-SGILKTALD  185 (186)
T ss_dssp             -EEEE-EETTCCEEEECSCCSSCEEEEEEEEEETTEECCCE-EEEEEC---
T ss_pred             -eEEE-cCCCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCE-EEEEEecCC
Confidence             1111 22335789999999999999999999998888654 466777654

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.93  E-value=5.2e-24  Score=181.65  Aligned_cols=226  Identities=18%  Similarity=0.260  Sum_probs=163.5

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCC-cee--EEEEEE-e--cCCCCCcceEEEEe--ecc---EEEEEEeCCCCCCc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGT-AEM--TIQLLV-Q--ETPEAPKNIRITEE--SSR---SLQISWTAPYSGNT   84 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~-~~~--~~~~~~-~--~~P~~p~~~~~~~~--~~~---~~~l~W~~~~~~~~   84 (273)
                      ..+.+.|.+|.+...|.|+|.|.|..|. ...  +..+.. .  .+|.+|.++.+...  ..+   ++.|+|.+|...++
T Consensus       221 ~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~g~~sv~l~W~pP~~~~g  300 (680)
T 1zlg_A          221 TDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI  300 (680)
T ss_pred             CCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCCCceEEEEEecCCCCCCC
Confidence            3457899999999999999999999883 222  222322 1  57889999998877  677   99999998876778


Q ss_pred             cceEEEEEEEeC-C--CCCCC-ccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcc---eEEEecCCCCCC
Q psy6638          85 AITQYIIQYKSS-E--EMWPT-QPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAE---LQASTLEEAPNG  157 (273)
Q Consensus        85 ~~~~y~v~~~~~-~--~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~---~~~~~~~~~p~~  157 (273)
                      ++.+|.|+|+.. .  ..+.. ...........+.+.+.+|.+++.|.|+|+|.|..|.+.++..   +.+.+....|. 
T Consensus       301 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~~T~~~~P~-  379 (680)
T 1zlg_A          301 PVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNN-  379 (680)
T ss_pred             ceeEEEEEEEecccccccCCccceEEEEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCceeEEEECCCCCCC-
Confidence            999999999832 1  11100 0112334445578999999999999999999999998887776   77777776664 


Q ss_pred             CCeeEEecCCccCCceEEE-----------EEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeee-------------
Q psy6638         158 APREVTSDPGVVDPTELLI-----------KWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK-------------  213 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l-----------~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~-------------  213 (273)
                       |.++.+..  .+.+++.|           .|.+|..   ++.+.+|.|.|...+...  ...+.+.             
T Consensus       380 -p~~l~~~~--~s~tsi~lp~~~~~~~~~l~W~~P~~---~~~~~~y~v~w~~~~~~~--v~~Y~V~w~~~~~~~~~~~~  451 (680)
T 1zlg_A          380 -KEQLVKTR--KGGIQTQLPFQRRRPTRPLEVGAPFY---QDGQLQVKVYWKKTEDPT--VNRYHVRWFPEACAHNRTTG  451 (680)
T ss_pred             -cccccccc--ccCccccccccccCCCccccccCCcc---cCCcceEEEEEeCCCCCc--cceEEEEEeeeecccCCCCc
Confidence             66777776  67778876           9999864   234568999988765321  1111111             


Q ss_pred             -eEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638         214 -SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       214 -~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                       ...........++|.+|+|++.|.|+|+|+|..|.|+
T Consensus       452 ~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~  489 (680)
T 1zlg_A          452 SEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSK  489 (680)
T ss_pred             ceeeeeeccCceEEecCCCCCCeEEEEEEEecCCCCCC
Confidence             1111122357899999999999999999999999764

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.93  E-value=1.9e-26  Score=201.61  Aligned_cols=237  Identities=19%  Similarity=0.265  Sum_probs=176.4

Q ss_pred             EEEEEEeeeeeCCCEEEEEEE-EcCCCC----ceeEEEEEE---ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceE
Q psy6638          17 ISELGIANVLRQDSGTLSCLA-TNYHGT----AEMTIQLLV---QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQ   88 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a-~n~~g~----~~~~~~~~~---~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~   88 (273)
                      .+.+.|.+|.+...|.|++.| .|..|.    +..+..+.+   ..+|.+|.++.+...+.+++.|+|.+|...++.+.+
T Consensus       548 ~~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG~I~~  627 (897)
T 2dtg_E          548 HPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITH  627 (897)
T ss_dssp             CCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEEEEEEECSSSCEEEEEECCCCSSSSCSE
T ss_pred             ccceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcceEEEeCCCCEEEEEEeCCCCCCCCeeE
Confidence            367899999999999999999 888876    222222222   457889999999998999999999999777778999


Q ss_pred             EEEEEEeCCCC------------------------------------------------------------------CCC
Q psy6638          89 YIIQYKSSEEM------------------------------------------------------------------WPT  102 (273)
Q Consensus        89 y~v~~~~~~~~------------------------------------------------------------------~~~  102 (273)
                      |.|+|+.....                                                                  |..
T Consensus       628 Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~W~~  707 (897)
T 2dtg_E          628 YLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFED  707 (897)
T ss_dssp             EECCEEEECCCCSCTTCSSSCSCCCCCC----------------------------------------------------
T ss_pred             EEEEEEECCCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhhhhhhhheeeeEEE
Confidence            99998763220                                                                  100


Q ss_pred             ccc-eE---------------------------EecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCC---CcceEEEec
Q psy6638         103 QPL-KI---------------------------IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSET---GAELQASTL  151 (273)
Q Consensus       103 ~~~-~~---------------------------~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~---s~~~~~~~~  151 (273)
                      ... ..                           ......+.+.+.+|.|++.|.|+|+|.|..|.+.+   +..+.+++.
T Consensus       708 ~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~~T~  787 (897)
T 2dtg_E          708 YLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTM  787 (897)
T ss_dssp             ----------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECC
T ss_pred             ccCceEEccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCCCCCCCceeEEecc
Confidence            000 00                           01113468899999999999999999999987654   455677776


Q ss_pred             CC-CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCC
Q psy6638         152 EE-APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL  230 (273)
Q Consensus       152 ~~-~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  230 (273)
                      +. .++.+|.++.+..  .+.+++.|+|++|..  ++|.|.+|.|+|+..+..... .   . ...........++|.+|
T Consensus       788 ~~~~~p~~P~~l~~~~--~~~~sv~LsW~~P~~--~nG~I~~Y~V~y~~~~~~~~~-~---~-~~~~~~~~~~~~~l~~L  858 (897)
T 2dtg_E          788 PEAKADDIVGPVTHEI--FENNVVHLMWQEPKE--PNGLIVLYEVSYRRYGDEELH-L---C-DTRKHFALERGCRLRGL  858 (897)
T ss_dssp             CCCCCCCCCCCCCCCS--SSSSCCCCCCCCCCS--CSSCEEEECCCCBSSSBCCCC-C---C-CCSSSCCCTTCCCCCSC
T ss_pred             CccCCCCCCcceEEEe--CCCCEEEEEECCCCC--CCCCEEEEEEEEEECCCcceE-E---E-EeeeeecccCcEEECCC
Confidence            53 3456777888877  788999999999976  578999999999877542100 0   0 00011224568899999


Q ss_pred             CccceEEEEEEEecCCCcCCCCccEEEEcCCCC
Q psy6638         231 TPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGD  263 (273)
Q Consensus       231 ~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~  263 (273)
                      .|+ .|.|+|+|.|..|.|++|+.+.++|.+.+
T Consensus       859 ~pg-tY~~rV~A~n~~G~G~~S~~v~~~T~~~p  890 (897)
T 2dtg_E          859 SPG-NYSVRIRATSLAGNGSWTEPTYFYVTDYL  890 (897)
T ss_dssp             CSS-EECCCCCEEETTBCCCCCCCCEECCCCCC
T ss_pred             CCC-cEEEEEEEEeCCcccCCCCCEEEEeCCCC
Confidence            999 69999999999999999999999998764

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.93  E-value=1.5e-23  Score=167.29  Aligned_cols=214  Identities=17%  Similarity=0.286  Sum_probs=163.9

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      ...+.+.|.+|.++..|.|++.|.|..|.+.... ......|.+|.++.+.....+.+.|+|.++.  .+.+.+|.|+++
T Consensus       147 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~t~~~~p~~l~~~~~~~~si~l~W~~p~--~~~i~~Y~v~~~  223 (375)
T 3t1w_A          147 SSVGYYTVTGLEPGIDYDISVITLINGGESAPTT-LTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYS  223 (375)
T ss_dssp             TTCCEEEEECCCTTCEEEEEEEEEETTEECCCEE-EEEECCCCCCEEEEEESCCSSCEEEEEECCS--SCCCCEEEEEEE
T ss_pred             CCcceEEEeCCCCCCEEEEEEEEEeCCcccCCee-eeeecCCCCCceeEEEecccCEEEEEEcCCC--CCCccEEEEEEE
Confidence            3456899999999999999999999988665544 2333455688899888888999999999874  356889999999


Q ss_pred             eCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceE
Q psy6638          95 SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL  174 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i  174 (273)
                      ..+...  ...........+.+.+.+|.+++.|.|+|+|.+..|.+.+.. ....+    ++.+|.++.+..  .+.+++
T Consensus       224 ~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~-~~~~t----~p~~P~~l~~~~--~~~~sv  294 (375)
T 3t1w_A          224 PVKNEE--DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-GRQKT----GLDSPTGIDFSD--ITANSF  294 (375)
T ss_dssp             EGGGTT--CCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEEC----CCCCCEEEEEES--CCSSCE
T ss_pred             eCCCCC--CcEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCcee-eEEec----CCCCCCccEeee--ccCCEE
Confidence            864321  112344555668999999999999999999999988776443 33333    334778899887  789999


Q ss_pred             EEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCC
Q psy6638         175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS  252 (273)
Q Consensus       175 ~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s  252 (273)
                      .|+|++|.     +.+.+|.|+|+..+....      ..... .......++|.+|.|++.|.|+|+|.|..|.|++.
T Consensus       295 ~l~W~~p~-----~~~~~Y~v~~~~~~~~~~------~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~s~p~  360 (375)
T 3t1w_A          295 TVHWIAPR-----ATITGYRIRHHPEHFSGR------PREDR-VPHSRNSITLTNLTPGTEYVVSIVALNGREESPLL  360 (375)
T ss_dssp             EEEEECCS-----SCCSEEEEEEEETTCCSS------CEEEE-EETTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             EEEECCCC-----cceeeEEEEEEECCCCCc------ceeEE-cCCCccEEEECCCCCCCEEEEEEEEECCCCCCCce
Confidence            99999973     468899999998764211      11111 22335789999999999999999999999999765

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.93  E-value=8.1e-24  Score=155.16  Aligned_cols=198  Identities=19%  Similarity=0.215  Sum_probs=143.9

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      .+|++|.++.+.......+.|+|.++.+.+.+ ..|.|.|+..+. .|.............+.+.+.+|.+.+.|.|+|.
T Consensus         2 ~pP~~P~nl~c~~~~~~~~~c~W~p~~~~~~~-~~Y~l~y~~~~~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~~V~   80 (210)
T 3n06_B            2 LPPGKPEIFKCRSPNKETFTCWWRPGTDGGLP-TNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMVN   80 (210)
T ss_dssp             CCCCCCEEEEEEBSSSSCEEEEEECCSSSCCC-SEEEEEEEETTCCCCEECSCSSTTCTTEEEECGGGCCSSSCEEEEEE
T ss_pred             CCCCCCeEeEEEeCCCCeEEEEECCCCCCCCC-ceEEEEEEECCCCccccCCCCCCCCCeEEEeCCCCcccceeEEEEEE
Confidence            47899999999888899999999988754444 689999987542 3432111100011223334457999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCcc----CCceEEEEEeCCCCCCc-cc-eeeeEEEEEEEcCCCCcc
Q psy6638         133 AENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVV----DPTELLIKWKAPPRESW-NG-VLLGYDVGYQISSGSSLA  206 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~----~~~~i~l~W~~~~~~~~-~~-~i~~y~v~~~~~~~~~~~  206 (273)
                      |.|..|.+. +..+.+.+....++.+|.++.+..  .    ..+++.|+|++|..... +| .+.+|+|+|+..+...+ 
T Consensus        81 A~N~~G~~~-s~~~~~~~~~~v~p~pP~~l~~~~--~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~~~~-  156 (210)
T 3n06_B           81 ATNQMGSSF-SDELYVDVTYIVQPDPPLELAVEV--KQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW-  156 (210)
T ss_dssp             EEETTEEEE-CCCEEECGGGCBCCCCCEEEEEEE--ECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTCSSC-
T ss_pred             EEcCCCCee-CCcEEEchhheEecCCCceEEEEE--ecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCCCCC-
Confidence            999988763 444666666666677998888765  3    25799999999976431 24 46899999998765322 


Q ss_pred             ceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCc-CCCCccEEEEcCCCCC
Q psy6638         207 LSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK-GPFSEPFIARTNEGDF  264 (273)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~-~~~s~~~~~~t~~~~P  264 (273)
                            ....  ......+.|.+|.|++.|.|+|+|.+..|. |+||+.+.++|+++..
T Consensus       157 ------~~~~--~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~~Tp~~~~  207 (210)
T 3n06_B          157 ------EIHF--AGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPSDFT  207 (210)
T ss_dssp             ------EEEE--EETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEEECCTTC-
T ss_pred             ------EEEe--ccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCceeEECcCCCc
Confidence                  1111  122468999999999999999999999897 9999999999987754

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.93  E-value=3.7e-23  Score=150.76  Aligned_cols=177  Identities=19%  Similarity=0.316  Sum_probs=136.3

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ...| +|.++.+...+.+++.|+|.++.  ++.+.+|.|+|+..+.....  .........+.+.+.+|.|++.|.|+|+
T Consensus        21 ~~~P-~P~~l~~~~~~~~sv~lsW~~p~--~~~i~~Y~v~~~~~~~~~~~--~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   95 (203)
T 2gee_A           21 MEVP-QPTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAGEGIPI--FEDFVDSSVGYYTVTGLEPGIDYDISVY   95 (203)
T ss_dssp             SCCC-CCEEEEEECCTTTCEEEEEECCS--SSSCCEEEEEEEESSSSSCC--EEEEEETTCCEEEECSCCTTCEEEEEEE
T ss_pred             ccCc-CCCccEEEecCCCEEEEEecCCC--CCCccEEEEEEEECCCCCCc--eeEEcCCCccEEEeCCCCCCCEEEEEEE
Confidence            4566 78899999989999999999885  34688999999986543221  2233456678899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeee
Q psy6638         133 AENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTL  212 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~  212 (273)
                      |.+..|.+.+   ..+.+....|  +|.++.+..  .+.+++.|+|++|.    ++.+.+|.|+|+..+....      .
T Consensus        96 a~~~~g~s~~---~~~~t~~~~p--~P~~l~~~~--~~~~sv~l~W~~p~----~~~i~~Y~v~~~~~~~~~~------~  158 (203)
T 2gee_A           96 TVKNGGESTP---TTLTQQTAVP--PPTDLRFTN--IGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEED------V  158 (203)
T ss_dssp             EESSSCBCCC---EEEEEECCCC--CCEEEEEEE--EETTEEEEEEECCS----SCCCSEEEEEEEETTCGGG------C
T ss_pred             EEeCCCcccc---EeeeecCCCc--CCCceEEEE--cCCCEEEEEEcCCC----CCCccEEEEEEEECCCCCc------c
Confidence            9998776543   4444444434  788999877  78999999999995    3578999999998654221      1


Q ss_pred             eeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCC
Q psy6638         213 KSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS  252 (273)
Q Consensus       213 ~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s  252 (273)
                      .... .......++|.+|+|++.|.|+|+|.|..|.|+++
T Consensus       159 ~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  197 (203)
T 2gee_A          159 AELS-ISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL  197 (203)
T ss_dssp             EEEE-ECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             EEEE-cCCCcCEEEECCCCCCCEEEEEEEEecCCCcCCCe
Confidence            1112 23446899999999999999999999999988765

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.92  E-value=2.1e-23  Score=153.57  Aligned_cols=197  Identities=20%  Similarity=0.205  Sum_probs=139.3

Q ss_pred             cCCCCCcceEEEEe-eccEEEEEEeCCCCCCccceEEEEEEEeCCCCCC--CccceEEe---cCCccEEEecCCCCCCeE
Q psy6638          54 ETPEAPKNIRITEE-SSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP--TQPLKIIV---PGSQTSATLQPLLPATQY  127 (273)
Q Consensus        54 ~~P~~p~~~~~~~~-~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~l~~~~~y  127 (273)
                      .+|.+|.++.+... ....+.|+|.++.+.+.+ ..|.|+++.....+.  ......+.   ....+.+.+.+|.+++.|
T Consensus         3 ~pP~~P~~l~c~~~~~~~~~~~~W~p~~~~~~~-~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y   81 (215)
T 1cd9_B            3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYM   81 (215)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSCE
T ss_pred             CCCCCCeeeeeecCCCcccEEEEecCCCCCCCc-eeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccceEE
Confidence            46889999988776 578999999988664444 579999987543211  11011111   123456777899999999


Q ss_pred             EEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCcc------CCceEEEEEeCCCCCCccceeeeEEEEEE-Ec
Q psy6638         128 QVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVV------DPTELLIKWKAPPRESWNGVLLGYDVGYQ-IS  200 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~------~~~~i~l~W~~~~~~~~~~~i~~y~v~~~-~~  200 (273)
                      .|+|.|.|..|.+. +..+.+.+....++.+|.++.+..  .      ..+.+.|+|++|..  .+..+++|+|+|+ ..
T Consensus        82 ~~~V~A~N~~G~~~-s~~~~~~~~~~v~p~pP~~~~~~~--~~~~~~~~~~~~~l~W~~p~~--~~~~~l~Y~v~y~~~~  156 (215)
T 1cd9_B           82 AIWVQAENMLGSSE-SPKLCLDPMDVVKLEPPMLQALDI--GPDVVSHQPGCLWLSWKPWKP--SEYMEQECELRYQPQL  156 (215)
T ss_dssp             EEEEEEEETTEEEE-CCCEEECGGGGBCCCCCEEEECCC---------CCSCEEEEEECCGG--GTTSCEEEEEEEEESS
T ss_pred             EEEEEEECCCCCcc-CccEEEchHHceEeCCCcEEEEEE--eccccCCCCCeEEEEEeCCCC--CCeEEEEEEEEEccCC
Confidence            99999999988653 445666666666778999998876  5      57889999999875  2333479999999 55


Q ss_pred             CCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCc---CCCCccEEEEcCCCC
Q psy6638         201 SGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK---GPFSEPFIARTNEGD  263 (273)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~---~~~s~~~~~~t~~~~  263 (273)
                      +...+       ..+.........+.|.+|+|++.|.|+|+|.+..|.   |+||+.+.++|.+++
T Consensus       157 ~~~~w-------~~~~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T~e~a  215 (215)
T 1cd9_B          157 KGANW-------TLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMKA  215 (215)
T ss_dssp             TTCCC-------EEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECCCC--
T ss_pred             CCCCc-------EEEecccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceecCCCC
Confidence            44321       221111223568999999999999999999998665   567888999998753

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.92  E-value=1.6e-24  Score=175.90  Aligned_cols=232  Identities=14%  Similarity=0.195  Sum_probs=167.3

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCC---ccceEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGN---TAITQYI   90 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~---~~~~~y~   90 (273)
                      ++....|.|.++...|.|.|.|.+.+  +.....+.+.+..+|.+|.++.+.......+.|+|.++.+.+   .++..|.
T Consensus       247 ~~~~~~L~I~nl~~sd~g~y~~~C~~--~~~i~~~~l~v~~pP~~P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~  324 (488)
T 2q7n_A          247 YGQTVAIHILNIPVSENSGTNIIFIT--DDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYT  324 (488)
T ss_dssp             SSSCEEEECCSCCCCCSSCEEEEEEE--SSCEEEEEEEEECCCCCCCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEE
T ss_pred             cceEEEEEEeCCCcccCCcEEEEEEc--CCeEEEEEEEeeCCCCCCcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEE
Confidence            45567899999999988888887773  223346777888999999999888878899999999876542   3577999


Q ss_pred             EEEEeCCCC--CCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCc
Q psy6638          91 IQYKSSEEM--WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGV  168 (273)
Q Consensus        91 v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~  168 (273)
                      +.++..+..  |....   ...+....+.+..+.....|.|+|.|.|..|.+. + .+.+.+...+++.||.++++..  
T Consensus       325 L~y~~~g~~~~c~~~~---~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~-S-~~~~~~~~~v~P~PP~nl~v~~--  397 (488)
T 2q7n_A          325 LFESISGKSAVFHRIE---GLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ-S-AVVINVTERVAPHDPTSLKVKD--  397 (488)
T ss_dssp             EEETTTCCEEEEECSS---CCCSSCEEEEEECCSSCCCCEEEEEEEETTEEEE-E-EEECCGGGTBCCCCCEEEEEEE--
T ss_pred             EEEEECCCCCCCcccc---ccCCceEEEEEcCCCCccEEEEEEEEEeCCCCcc-c-eEEEEecCCCCCCCCeEEEEEe--
Confidence            998654321  11000   0002334566654444689999999999988633 3 4555555666778999999887  


Q ss_pred             cCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEE--EcCCCCccceEEEEEEEecCC
Q psy6638         169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGEL--RIPGLTPYTKYAIVVRGYNSV  246 (273)
Q Consensus       169 ~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~L~p~~~Y~~~v~a~n~~  246 (273)
                      .+.+++.|+|++|..  .++.+..|+|+|+..+...+.      ............+  +|.+|+|++.|.|+|+|.+ .
T Consensus       398 ~s~~sl~LsW~pP~~--~~g~~l~YeV~Yr~~~~~~w~------~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~  468 (488)
T 2q7n_A          398 INSTVVTFSWYLPGN--FTKINLLCQIEICKANSKKEV------RNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-K  468 (488)
T ss_dssp             CSTTCEEEEEEEEEE--CSSSEEEEEEEEBCTTSCCEE------EEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-S
T ss_pred             cCCCEEEEEEeCCCC--CCCcceEEEEEEEECCCCCce------EEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-C
Confidence            788999999999965  367789999999987653211      1111111112345  9999999999999999999 8


Q ss_pred             Cc---CCCCccEEEEcCCCC
Q psy6638         247 GK---GPFSEPFIARTNEGD  263 (273)
Q Consensus       247 g~---~~~s~~~~~~t~~~~  263 (273)
                      |.   |+||+.+.++|.+++
T Consensus       469 g~G~WS~WS~~v~~~T~e~a  488 (488)
T 2q7n_A          469 TFWKWSRWSDEKRHLTTEAT  488 (488)
T ss_dssp             SCSSCCCCCCCCCBCCCCCC
T ss_pred             CCCCCCCCcCCEeEECCCCC
Confidence            87   578888889987753

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.92  E-value=8.8e-23  Score=157.12  Aligned_cols=192  Identities=22%  Similarity=0.286  Sum_probs=149.1

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC--CCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE--MWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..+|.+|.++.+...+.+++.|+|+++   ++.+.+|.|+|+....  .|.    ........+.+.+.+|.+++.|.|+
T Consensus        18 ~~~p~~P~~l~~~~~~~~sv~l~W~~p---~~~~~~Y~v~~~~~~~~~~~~----~~~~~~~~~~~~i~~L~p~t~Y~~~   90 (290)
T 3r8q_A           18 GPAIPAPTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTPKEKTGPMK----EINLAPDSSSVVVSGLMVATKYEVS   90 (290)
T ss_dssp             --CCCCCEEEEEEEECSSCEEEEEECC---SSCCCEEEEEEEESSSSSCCE----EEEECTTCCEEEECSCCSSCEEEEE
T ss_pred             CCCCCCCCceEEEECCCCEEEEEEeCC---CCCeeEEEEEEEeCCCCCceE----EEEcCCCccEEEeCCCCCCCEEEEE
Confidence            456789999999999999999999987   3478899999998652  222    3345556789999999999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceee
Q psy6638         131 LLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSY  210 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~  210 (273)
                      |+|.+..|.+.++. ..+.+... + .+|.++.+..  .+.+++.|.|+++.     +.+.+|.|+|+..++...     
T Consensus        91 V~a~~~~g~s~~s~-~~~~t~~~-~-~~P~~l~~~~--~~~~sv~l~W~~p~-----~~~~~Y~v~~~~~~~~~~-----  155 (290)
T 3r8q_A           91 VYALKDTLTSRPAQ-GVVTTLEN-V-SPPRRARVTD--ATETTITISWRTKT-----ETITGFQVDAVPANGQTP-----  155 (290)
T ss_dssp             EEEEETTEECCCEE-EEEECCCC-C-CCCEEEEEEE--ECSSCEEEEEECCS-----CCCCEEEEEEEESSSCCC-----
T ss_pred             EEEEeCCCCCCCcc-eeEecCCC-C-CCCceeEEEE--cCCCeEEEEEeCCC-----CcccEEEEEEEECCCCcc-----
Confidence            99999998887663 44555432 3 4788898887  89999999999973     468899999998765321     


Q ss_pred             eeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcccccc
Q psy6638         211 TLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFLFCA  270 (273)
Q Consensus       211 ~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~~~~~  270 (273)
                        .. .........+++.+|.|++.|.|+|+|.|..|.|... .+.+.|.+.+|..+...
T Consensus       156 --~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~-~~~~~t~p~~P~~l~~~  211 (290)
T 3r8q_A          156 --IQ-RTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV-VIDASTAIDAPSNLRFL  211 (290)
T ss_dssp             --EE-EEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCE-EEEEECCCCCCEEEEEE
T ss_pred             --eE-EecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCE-EEEecCCCCCCCccEEE
Confidence              11 1123345789999999999999999999999988664 57778888888877654

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.91  E-value=2.2e-23  Score=151.86  Aligned_cols=177  Identities=21%  Similarity=0.416  Sum_probs=129.5

Q ss_pred             CCcceEEEEee--ccEEEEEEeCCCCCCccceEEEEEEEeCCC--CCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          58 APKNIRITEES--SRSLQISWTAPYSGNTAITQYIIQYKSSEE--MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        58 ~p~~~~~~~~~--~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      +|.++++....  .+++.|+|.+|  .++.+.+|.|+|+....  .|.    ........+.+.+.+|.|++.|.|+|.|
T Consensus         2 ~P~~l~v~~v~~~~~si~l~W~~p--~~~~i~~Y~v~~~~~~~~~~~~----~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   75 (201)
T 2ha1_A            2 GPVEVFITETPSQPNSHPIQWNAP--QPSHISKYILRWRPKNSVGRWK----EATIPGHLNSYTIKGLKPGVVYEGQLIS   75 (201)
T ss_dssp             CCCEEECCSCSCCSSCEEEEEECC--SSTTCCEEEEEEEETTCSSCCE----EEEECTTCCEEEECSCCTTEEEEEEEEE
T ss_pred             CceeEEEEecCCCCCEEEEEEeCC--CCCCceEEEEEEEECCCCCceE----EEecCCCccEEEecCCCCCCEEEEEEEE
Confidence            67888887766  89999999998  34578999999997543  333    3345566789999999999999999999


Q ss_pred             eCCCCCCCCCcceEEEecCC-----------CCCCCC----eeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEE
Q psy6638         134 ENPLGMSETGAELQASTLEE-----------APNGAP----REVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQ  198 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~~~-----------~p~~~p----~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~  198 (273)
                      .|..|.+.++ .+.+.+...           .|..+|    .++.+..  .+.+++.|+|++|.     +.+.+|.|+|+
T Consensus        76 ~n~~G~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~--~~~~sv~l~W~~p~-----~~i~~Y~v~~~  147 (201)
T 2ha1_A           76 IQQYGHQEVT-RFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTE--ITASSFVVSWVSAS-----DTVSGFRVEYE  147 (201)
T ss_dssp             ECTTSCEEEE-EEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCC--CCSCCEEEECCCSC-----TTEEEEEEEEE
T ss_pred             EecccccCce-eEEEecCCCCCCcccccccCCCCCCCCccCCceEEEe--cCCCeEEEEEeCCC-----CCccEEEEEEE
Confidence            9998877543 334433221           122222    3556666  78899999999983     46899999999


Q ss_pred             EcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccE
Q psy6638         199 ISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF  255 (273)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~  255 (273)
                      ..+.....      .... .......++|.+|+|++.|.|+|+|+|..|.|++....
T Consensus       148 ~~~~~~~~------~~~~-v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~s~~  197 (201)
T 2ha1_A          148 LSEEGDEP------QYLD-LPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILST  197 (201)
T ss_dssp             ETTTCCCC------EEEE-EETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEEEEE
T ss_pred             ECCCCCce------eEEE-cCCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccEeeE
Confidence            75432211      1112 23346789999999999999999999999998765433

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.91  E-value=3.7e-22  Score=153.06  Aligned_cols=196  Identities=17%  Similarity=0.196  Sum_probs=146.4

Q ss_pred             EEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC--CCCCCccceEEecCCccEEEecCCCCCCeE
Q psy6638          50 LLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE--EMWPTQPLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        50 ~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      +....+|.+|.++.+.....+++.|+|+++.   +.+.+|.|+|+...  +.|    ...........+.+.+|.|++.|
T Consensus         9 ~~~~~~p~~P~~l~~~~~~~~sv~l~W~~~~---~~~~~Y~v~~~~~~~~~~~----~~~~~~~~~~~~~i~~L~p~t~Y   81 (283)
T 1tdq_A            9 GGGIPVIDGPTQILVRDVSDTVAFVEWTPPR---AKVDFILLKYGLVGGEGGK----TTFRLQPPLSQYSVQALRPGSRY   81 (283)
T ss_dssp             ---CCSSCCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEESSSSCCC----EEEEECTTCSEEEECSCCTTCEE
T ss_pred             cccccCCCCCcEEEEEecCCCeEEEEEECCC---CceeEEEEEEEEecCCCCc----EEEEeCCCCCEEEecCCCCCCEE
Confidence            3456788999999999999999999999885   46889999997643  333    23345567789999999999999


Q ss_pred             EEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccc
Q psy6638         128 QVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL  207 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~  207 (273)
                      .|+|+|.+..|.+.. ....+.+    ++.+|.++.+..  .+.+++.|.|+++.     +.+.+|.|+|+..++...  
T Consensus        82 ~~~V~a~~~~g~s~~-~~~~~~t----~p~~P~~l~~~~--~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~~~~~--  147 (283)
T 1tdq_A           82 EVSISAVRGTNESDA-SSTQFTT----EIDAPKNLRVGS--RTATSLDLEWDNSE-----AEAQEYKVVYSTLAGEQY--  147 (283)
T ss_dssp             EEEEEEEETTEECCC-EEEEEEC----CCCCCEEEEEEE--ECSSCEEEEEECCS-----SCCSEEEEEEEETTCCCC--
T ss_pred             EEEEEEECCCCCCCC-eeEEEEC----CCCCCCceEEEe--cCCCeEEEEecCCC-----CCccEEEEEEEeCCCCcc--
Confidence            999999998877643 2233333    445778998887  88999999999985     457899999998765321  


Q ss_pred             eeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcccccc
Q psy6638         208 SSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFLFCA  270 (273)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~~~~~  270 (273)
                         ..............+++.+|.|++.|.|+|+|.|..|.|.+. .+.+.|.+.+|..+...
T Consensus       148 ---~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~-~~~~~t~~~~P~~l~~~  206 (283)
T 1tdq_A          148 ---HEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPA-TMNARTELDSPRDLMVT  206 (283)
T ss_dssp             ---EEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCE-EEEEECCCCCCEEEEEE
T ss_pred             ---eEEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcce-EEEecCCCCCCCccEEe
Confidence               011111111115789999999999999999999999888654 46677777778766554

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=177.56  Aligned_cols=221  Identities=23%  Similarity=0.278  Sum_probs=163.6

Q ss_pred             EEEEe-eeeeCCCEEEEEEEEcCCCCcee-EEEEEE--ecCCCCCcceEEE--EeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          19 ELGIA-NVLRQDSGTLSCLATNYHGTAEM-TIQLLV--QETPEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        19 ~l~i~-~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~--~~~P~~p~~~~~~--~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      .+.|. ++.+...|.|+|.|.|..|.... ...+..  ..+|.+|.++.+.  ....+.+.|+|.+|...++.+..|.|+
T Consensus       158 ~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~~~~~Y~v~  237 (589)
T 3l5h_A          158 SCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQ  237 (589)
T ss_dssp             CCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGGTSCEEEEEE
T ss_pred             EEEECCCCchheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCCeeeEEEEEE
Confidence            34455 67888999999999999998643 333322  3479999999884  457889999999887656678899999


Q ss_pred             EEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCC---CcceEEEecCCCCCCCCeeEEec---
Q psy6638          93 YKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSET---GAELQASTLEEAPNGAPREVTSD---  165 (273)
Q Consensus        93 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~---s~~~~~~~~~~~p~~~p~~~~~~---  165 (273)
                      ++..+ ..|..... .......+.+.+.+|.|++.|.|+|+|.+..|.+.+   +..+.+.+.+..|..+|..+...   
T Consensus       238 ~~~~~~~~w~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~~~v~~~  316 (589)
T 3l5h_A          238 YRTKDASTWSQIPP-EDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPS  316 (589)
T ss_dssp             EEETTCSCCBCCCT-TSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCEEEECCSC
T ss_pred             ECCCCCCCcEEEcc-ccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcEEEEeecC
Confidence            99865 45653211 112234578999999999999999999998886554   66677788887787778765533   


Q ss_pred             -CCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEec
Q psy6638         166 -PGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYN  244 (273)
Q Consensus       166 -~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  244 (273)
                       .  .+..++.|.|+++.....+|.+.+|.|+|+..+....        ..   ......+++  |.+++.|.|+|+|.|
T Consensus       317 ~~--~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~~~--------~~---~~~~~~~~~--l~~~~~Y~~~V~A~n  381 (589)
T 3l5h_A          317 HT--QGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ--------NY---TVNATKLTV--NLTNDRYLATLTVRN  381 (589)
T ss_dssp             SS--TTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSCCC--------BC---CCSSSCCEE--CCCSSCCCEEEEEEB
T ss_pred             cC--CCcceEEEEEeeCCchhccCceeeEEEEEecCCCCce--------ee---ccCCceEEE--EeCCCCEEEEEEEEe
Confidence             3  5778999999987655568999999999977654321        11   111234444  889999999999999


Q ss_pred             CCCcCCCCccE
Q psy6638         245 SVGKGPFSEPF  255 (273)
Q Consensus       245 ~~g~~~~s~~~  255 (273)
                      ..|.|+++...
T Consensus       382 ~~G~~~~s~~~  392 (589)
T 3l5h_A          382 LVGKSDAAVLT  392 (589)
T ss_dssp             TTBCCCCCCCC
T ss_pred             CCccCCCeEEE
Confidence            99999888543

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.90  E-value=7.4e-24  Score=178.60  Aligned_cols=234  Identities=18%  Similarity=0.286  Sum_probs=170.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCc---eeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTA---EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~---~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      ++..+.|.|.++...+. .|.|.+.. .|..   ...+.+.+..+|.+|.++.+.......+.|+|.++.+. ..+..|.
T Consensus        60 ~~~~~~l~i~~~~~~~~-~y~C~~~~-~~~~~~~~~~~~l~v~~pP~~P~nl~c~~~~~~~~~~~W~~~~~~-~~~~~y~  136 (589)
T 3l5h_A           60 NRTASSVTFTDIASLNI-QLTCNILT-FGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRET-HLETNFT  136 (589)
T ss_dssp             SSSCCBCCCCCCCSSCC-CCCCC-CC-TTCC-CCCCCCCCCC-CCCCCCEEEEEEEETTSCEEEEEECCSCC-SSCEEEE
T ss_pred             CCcEeEEEEecCCCcce-eeEEeccc-CCCcccEEEeEEEeccCCCCCCEeeEEEECCCceEEEEECCCCcC-CcCceEE
Confidence            34467899999998865 57788763 2322   23455666789999999999988888999999987543 4577999


Q ss_pred             EEEEeCCCCCCCccceEEecCCccEEEec-CCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEe--cCC
Q psy6638          91 IQYKSSEEMWPTQPLKIIVPGSQTSATLQ-PLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTS--DPG  167 (273)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~--~~~  167 (273)
                      ++++.....+.   .+.........+.+. +|.++..|.|+|.|.|..|.+. +..+.+.+....++.+|.++.+  .. 
T Consensus       137 l~~~~~~~~~~---~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~-  211 (589)
T 3l5h_A          137 LKSEWATHKFA---DCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSE-  211 (589)
T ss_dssp             ECCBCSSSBCC---CEECBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBC-CCCEEECGGGSEECCCCCSCEEECTT-
T ss_pred             EEEEEcCCCcc---cCCCCCCCcEEEEECCCCchheeEEEEEEEEeCCCCcc-cccEEEccccEEEcCCCceEEEEecC-
Confidence            99876544333   122233334556666 7999999999999999988753 4446665555556678888887  45 


Q ss_pred             ccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEE--ecCCcccEEEcCCCCccceEEEEEEEecC
Q psy6638         168 VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE--LDNQYEGELRIPGLTPYTKYAIVVRGYNS  245 (273)
Q Consensus       168 ~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  245 (273)
                       ...+++.|+|++|..  .++.+.+|.|+|+..+...+       ....  ........+.+.+|.|++.|.|+|+|.|.
T Consensus       212 -~~~~~v~l~W~~p~~--~~~~~~~Y~v~~~~~~~~~w-------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~  281 (589)
T 3l5h_A          212 -ELSSILKLTWTNPSI--KSVIILKYNIQYRTKDASTW-------SQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKE  281 (589)
T ss_dssp             -TCTTCEEEECCCCGG--GGTSCEEEEEEEEETTCSCC-------BCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEES
T ss_pred             -CCCCeEEEEeCCCCC--CCeeeEEEEEEECCCCCCCc-------EEEccccCcCceeEEEECCCCCCCEEEEEEEEEeC
Confidence             688999999999876  36788999999998765432       1111  11223578999999999999999999999


Q ss_pred             CCcCCC---CccEEEEcCCCCCc
Q psy6638         246 VGKGPF---SEPFIARTNEGDFL  265 (273)
Q Consensus       246 ~g~~~~---s~~~~~~t~~~~P~  265 (273)
                      .|.|.+   |..+.+.|.+.+|.
T Consensus       282 ~g~g~~S~~S~~~~~~T~~~~P~  304 (589)
T 3l5h_A          282 DGKGYWSDWSEEASGITYEDRPS  304 (589)
T ss_dssp             SSCSCCCCCCCCBCCCCCCCCCC
T ss_pred             CCCCccCCCCCccccccCccCCC
Confidence            988665   67777888887763

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.89  E-value=4.2e-22  Score=153.95  Aligned_cols=190  Identities=16%  Similarity=0.235  Sum_probs=124.1

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEe--cCCCCCCeEEEEEE
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATL--QPLLPATQYQVRLL  132 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~y~~~v~  132 (273)
                      ..+|+++++... +..+.|+|.++..+.+++. |.|+|+..+ ..|.....+...  ..+.+.+  ..|.++..|.|||+
T Consensus         4 l~~P~nv~~~~~-n~~~iL~W~pp~~~~~~v~-Y~V~y~~~~~~~W~~~~~c~~~--~~~~c~lt~~~l~~~~~Y~~rV~   79 (306)
T 3s98_A            4 LKSPQKVEVDII-DDNFILRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSGCQNI--TSTKCNFSSLKLNVYEEIKLRIR   79 (306)
T ss_dssp             ----CCCEEEEE-TTEEEEECC--------CE-EEEEEEESSCSSCEECTTCSSB--SSSEEECCC---CTTSCEEEEEE
T ss_pred             CCCCcEeEEEEE-CCeEEEEEcCCCCCCCCeE-EEEEEEECCCCCcEECCCccCC--CCCEEEccccccCCCCcEEEEEE
Confidence            457899988875 5567899999876656675 999999864 467532222112  3345555  45789999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCC----ccceeeeEEEEEEEcCCCCccce
Q psy6638         133 AENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRES----WNGVLLGYDVGYQISSGSSLALS  208 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~----~~~~i~~y~v~~~~~~~~~~~~~  208 (273)
                      |.| .|.|.++....+.+....+.+||. +.+..   ..+++.|.|+|+....    .++.+.+|+|.|+..+....   
T Consensus        80 A~n-~~~S~~s~~~~f~~~~~~~~~pP~-v~~~~---~~~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~~~~~~~---  151 (306)
T 3s98_A           80 AEK-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEA---EDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVE---  151 (306)
T ss_dssp             EEC-SSCEEEEECCCBCHHHHCBCCCCE-EEEEE---CSSCEEEEEECC---CCCC-----CCEEEEEEEETTTCCC---
T ss_pred             EEe-CCcCCCEeeeeEechhhCccCCCe-EEEEE---cCCEEEEEEECCCCCCcceeccCCcEEEEEEEEECCCCCe---
Confidence            999 777776655666655555556775 77665   3468999999665321    14688999999998865431   


Q ss_pred             eeeeeeEEecCCcccEEEcCCCCccceEEEEEEEec--CCCcCCCCccEEEEcCCCCC
Q psy6638         209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYN--SVGKGPFSEPFIARTNEGDF  264 (273)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n--~~g~~~~s~~~~~~t~~~~P  264 (273)
                         +. ..   .....++|.+|.|++.|.|+|+|.+  ..|.|++|+.+.+.|..+.|
T Consensus       152 ---~~-~~---~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~~p  202 (306)
T 3s98_A          152 ---ER-IE---NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENE  202 (306)
T ss_dssp             ---EE-EE---EECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECCSCCS
T ss_pred             ---EE-Ee---cccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEecCCCc
Confidence               11 11   1246899999999999999999999  68999999999999876643

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.89  E-value=8.8e-21  Score=147.48  Aligned_cols=227  Identities=12%  Similarity=0.127  Sum_probs=146.7

Q ss_pred             EEEeeeeeCCCEEEEEEEE---cCCCCceeEEEEEE----ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          20 LGIANVLRQDSGTLSCLAT---NYHGTAEMTIQLLV----QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        20 l~i~~~~~~~~~~y~~~a~---n~~g~~~~~~~~~~----~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      +.+..+.+.+.|.+++.|.   +..|.....+...+    ..+|.+|.++.+.......+.|+|.++... +....|.|.
T Consensus        55 ~~~~~~~~~~~y~~~V~a~~~~~~~g~~s~~~~~~~~~~~~~pp~~P~~l~c~~~~~~~~~c~W~~~~~~-~~~~~Y~l~  133 (314)
T 3bpo_C           55 RRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNT-SPDTNYTLY  133 (314)
T ss_dssp             EEEEECCCSSCEEEEEEECC---------CCEEEEECCCCC-CCSSCEEEEEEEETTTEEEEEEECCC----CCCCEEEE
T ss_pred             EEEEEEcCCCcEEEEEEEEecCCCCCCCCcCeeeeeecCCCCCCCCCEeceEEECCCCeEEEEECCCCCC-CCCccEEEE
Confidence            4567788899999999994   34443333332122    245678899988888889999999988643 346789999


Q ss_pred             EEeCCC-CCCCccceEEecCCccEEEecCCC----CCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCC
Q psy6638          93 YKSSEE-MWPTQPLKIIVPGSQTSATLQPLL----PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPG  167 (273)
Q Consensus        93 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~----~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~  167 (273)
                      +...+. .+..... ....+....+.+..+.    ....|.|+|.|.|..|.+..+ ...+.+...+.+.||.++++.. 
T Consensus       134 y~~~~~~~~~~C~~-~~~~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~-~~~~~~~~~v~P~pP~~l~~~~-  210 (314)
T 3bpo_C          134 YWHRSLEKIHQCEN-IFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPS-FNIVPLTSRVKPDPPHIKNLSF-  210 (314)
T ss_dssp             EEESSCSSCEECCC-EEEETTEEEEEEECCC--------CCEEEEEEETTSCSCCE-EEEECSSSSEECCCCEEEEEEE-
T ss_pred             EEeCCCCccccCcC-eecCCCeEEEEECCCCccccceeEEEEEEEEEcCCCceecc-cEEEehhheEeeCCCCEEEEEE-
Confidence            876542 2221111 1222334566666665    367899999999988866433 3555555545557898888854 


Q ss_pred             ccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEe------------cCCcccEEEcCCCCccce
Q psy6638         168 VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL------------DNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       168 ~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~i~~L~p~~~  235 (273)
                        ..+++.|+|++|..  .++.+++|+|+|+..+...+       .....            .......++|.+|+|++.
T Consensus       211 --~~~~l~lsW~~P~~--~~~~~l~Yev~y~~~~~~~w-------~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~  279 (314)
T 3bpo_C          211 --HNDDLYVQWENPQN--FISRCLFYEVEVNNSQTETH-------NVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTL  279 (314)
T ss_dssp             --ETTEEEEEEECCTT--CCGGGEEEEEEEEC--CCCE-------EEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSC
T ss_pred             --cCCcEEEEEeCCCc--cCCceEEEEEEEEECCCCcc-------eEEecccccccccccccccCCceEEEEccCCCCCE
Confidence              56799999999974  24457899999998765421       11111            113357899999999999


Q ss_pred             EEEEEEEecC------CC-cCCCCccEEEEcCC
Q psy6638         236 YAIVVRGYNS------VG-KGPFSEPFIARTNE  261 (273)
Q Consensus       236 Y~~~v~a~n~------~g-~~~~s~~~~~~t~~  261 (273)
                      |.|+|+|.+.      .| .|+||+.+.+.+..
T Consensus       280 Y~~qVra~~~~~~~~~~g~WS~WS~~~~~~~~~  312 (314)
T 3bpo_C          280 NTVRIRVKTNKLCYEDDKLWSNWSQEMSIGKKR  312 (314)
T ss_dssp             EEEEEEEEECTTTSCCCCCCCCCCCCEEESCCC
T ss_pred             EEEEEEeeecccccCCCCeeCCCCCCeEecccC
Confidence            9999999984      56 38888888886654

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.88  E-value=2.4e-22  Score=162.06  Aligned_cols=225  Identities=17%  Similarity=0.207  Sum_probs=92.3

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcC--CCCceeE--EEEEE-e-cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNY--HGTAEMT--IQLLV-Q-ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~--~g~~~~~--~~~~~-~-~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      ...+.|.+|.+...|.+++.|.|.  .|.+..+  ..+.. . .++.+|.++.+... ...+.|.|.++.    ...+|.
T Consensus       162 ~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~-~~~~~l~W~pp~----~~~~Y~  236 (414)
T 3se4_A          162 YSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQ-NQNYVLKWDYTY----ANMTFQ  236 (414)
T ss_dssp             CSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEEEEE-TTEEEEEEECSS----SSCEEE
T ss_pred             CcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEEEEe-cCCeEEEECCCC----CCeEEE
Confidence            346889999999999999999994  4444332  22222 2 23457888887765 467999999863    234999


Q ss_pred             EEEEeC---------CCCCCCccceEEecCCccEEEec-CCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCe
Q psy6638          91 IQYKSS---------EEMWPTQPLKIIVPGSQTSATLQ-PLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPR  160 (273)
Q Consensus        91 v~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~  160 (273)
                      |+|+..         ...|.....+  .....+.+.+. +|.++..|.|+|+|.|..|.|.++....+.+....+++||.
T Consensus       237 v~y~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~t~~~~~~~pP~  314 (414)
T 3se4_A          237 VQWLHAFLKRNPGNHLYKWKQIPDC--ENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPV  314 (414)
T ss_dssp             EEEEESGGGSCCCC--CCCCBCSTT--TTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEETTCC-------
T ss_pred             EEEEehhccccccccccCceECCCc--cCCCCCEEcCCcccccCccEEEEEEEecCCCcccccccccccchhccccCCCe
Confidence            999863         2355532111  11233556664 69999999999999999999999988889888887777886


Q ss_pred             eEEecCCccCCceEEEEEeCCCCCC----ccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         161 EVTSDPGVVDPTELLIKWKAPPRES----WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       161 ~~~~~~~~~~~~~i~l~W~~~~~~~----~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                       +++..  . .+++.|.|++|....    .++.+.+|.|.|+..+....      .. .  . .....++|.+|+|++.|
T Consensus       315 -l~~~~--~-~~si~v~W~~P~~~~~~~~~~~~~~~Y~v~y~~~~~~~~------~~-~--~-~~~~~~~l~~L~p~t~Y  380 (414)
T 3se4_A          315 -FNIRS--L-SDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAE------RK-I--I-EKKTDVTVPNLKPLTVY  380 (414)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -EEEEE--C-CCeEEEEEECCCCccccchhhcCCeEEEEEEEECCCCce------EE-E--E-ecCCeEEeCCCCCCCeE
Confidence             77765  3 579999999997632    12467899999987654321      01 1  1 23468999999999999


Q ss_pred             EEEEEEecC----CCcCCCCccEEEEcCCC
Q psy6638         237 AIVVRGYNS----VGKGPFSEPFIARTNEG  262 (273)
Q Consensus       237 ~~~v~a~n~----~g~~~~s~~~~~~t~~~  262 (273)
                      .|+|+|.+.    .|.|++|..+.++|.++
T Consensus       381 ~~~V~A~~~~~~~~g~g~~S~~~~~~T~~~  410 (414)
T 3se4_A          381 CVKARAHTMDEKLNKSSVFSDAVCEKTKPG  410 (414)
T ss_dssp             ------------------------------
T ss_pred             EEEEEEEecccccCCCCCCCCCEeEEeCCC
Confidence            999999983    58899999999998765

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.88  E-value=3.1e-20  Score=143.49  Aligned_cols=225  Identities=12%  Similarity=0.114  Sum_probs=148.3

Q ss_pred             EEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE----ecCCCCCcceEEEEeeccEEEEEEeCCCCC------CccceEE
Q psy6638          20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV----QETPEAPKNIRITEESSRSLQISWTAPYSG------NTAITQY   89 (273)
Q Consensus        20 l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~----~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~------~~~~~~y   89 (273)
                      |....+.+...|.+++.|.| .|.+..+....+    ...+.||. +.+... ..++.|.|.++...      .+.+..|
T Consensus        63 lt~~~l~~~~~Y~~rV~A~n-~~~S~~s~~~~f~~~~~~~~~pP~-v~~~~~-~~si~v~w~P~~~~~~~~~~~g~~l~Y  139 (306)
T 3s98_A           63 FSSLKLNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEAE-DKAIVIHISPGTKDSVMWALDGLSFTY  139 (306)
T ss_dssp             CCC---CTTSCEEEEEEEEC-SSCEEEEECCCBCHHHHCBCCCCE-EEEEEC-SSCEEEEEECC---CCCC-----CCEE
T ss_pred             ccccccCCCCcEEEEEEEEe-CCcCCCEeeeeEechhhCccCCCe-EEEEEc-CCEEEEEEECCCCCCcceeccCCcEEE
Confidence            33345678899999999999 665443322222    23566775 666654 46899999965431      3578899


Q ss_pred             EEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeC--CCCCCCCCcceEEEecCCCCCCCCeeEEecCC
Q psy6638          90 IIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAEN--PLGMSETGAELQASTLEEAPNGAPREVTSDPG  167 (273)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~--~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~  167 (273)
                      .|.|...+....   ..  .....+.+.|.+|.+++.|.|+|+|.+  ..|.|.++..+.+.+..+.|..+|.++.+.. 
T Consensus       140 ~v~y~~~~~~~~---~~--~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~~p~~~P~~v~~~~-  213 (306)
T 3s98_A          140 SLVIWKNSSGVE---ER--IENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSV-  213 (306)
T ss_dssp             EEEEEETTTCCC---EE--EEEECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECCSCCSSCCCEEEEEEE-
T ss_pred             EEEEEECCCCCe---EE--EecccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEecCCCcCCCCceEEEEE-
Confidence            999988654321   11  123457899999999999999999999  6788999999999998888878899999866 


Q ss_pred             ccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCC-ccceeeeeeeE-EecCCcccEEEcCC-CCccceEEEEEEEec
Q psy6638         168 VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSS-LALSSYTLKSV-ELDNQYEGELRIPG-LTPYTKYAIVVRGYN  244 (273)
Q Consensus       168 ~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~i~~-L~p~~~Y~~~v~a~n  244 (273)
                        ..+++.|.|+++..   +   .+|.+++...--.+ .......|... .........+.+.+ |.+...|.|||+|.|
T Consensus       214 --~~~s~~l~W~~p~~---~---~~~~v~~~~gy~~~~~~~~~~~W~~~~~c~~~~~~~c~~~~~~~~~~~Y~~RV~A~n  285 (306)
T 3s98_A          214 --QNQNYVLKWDYTYA---N---MTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASD  285 (306)
T ss_dssp             --ETTEEEEEEECSSS---S---CEEEEEEEEGGGGSCC----CCCEECGGGTTBSSSEEEEEGGGSCSSEEEEEEEEEC
T ss_pred             --ecCEEEEEeCCCCC---c---EEEEEEEehhhhhccccccccCceECCCceeCCCccccCchhhcccCCEEEEEEEcc
Confidence              45789999999754   2   25666665321000 00000012211 11222346677777 345559999999999


Q ss_pred             CCCcCCCCccEEEEcCC
Q psy6638         245 SVGKGPFSEPFIARTNE  261 (273)
Q Consensus       245 ~~g~~~~s~~~~~~t~~  261 (273)
                      ..|.|.+|+...|.|..
T Consensus       286 ~~~~s~~s~~~~~~~~~  302 (306)
T 3s98_A          286 GNNTSFWSEEIKFDTEI  302 (306)
T ss_dssp             SSCBCCCCCCEEEEC--
T ss_pred             CCCccccccccccCccc
Confidence            99999999999998864

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.87  E-value=7.5e-21  Score=153.52  Aligned_cols=228  Identities=16%  Similarity=0.229  Sum_probs=162.8

Q ss_pred             CCcEEEEEEeeeeeC--CCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCC---ccceE
Q psy6638          14 DGMISELGIANVLRQ--DSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGN---TAITQ   88 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~--~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~---~~~~~   88 (273)
                      ++....+.|.|+...  ....|.|...    .......+.+..+|++|+++.........+.|+|.++.+..   .....
T Consensus       242 ~~~~~~i~v~nl~~~~~sg~n~~C~~~----~~~~g~~l~vg~PP~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~~~t~  317 (483)
T 3e0g_A          242 DGENVAIKIRNISVSASSGTNVVFTTE----DNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATS  317 (483)
T ss_dssp             SSSCEEEEECSCCCCCSSCEEEEEEES----SCEEEEEEEEECCCCCCEEEEEEBSSTTEEEEEEECCSCCSCCGGGCCE
T ss_pred             cCCEEEEEEeCCCCccCccceEEEecC----CcccceEEECcCCCCCCCccEEEecCCCEEEEEECCCCcCCcCCCCCee
Confidence            455677888888763  3346888752    13345667778899999999888777789999999876432   23679


Q ss_pred             EEEEEEeCCCCCCCccceEEe---cCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEec
Q psy6638          89 YIIQYKSSEEMWPTQPLKIIV---PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSD  165 (273)
Q Consensus        89 y~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~  165 (273)
                      |.|.++..+.. .   .....   .+....+.+.+|.+...|.|+|.|.|..|.+. +. ..+.....++|.||.++.+.
T Consensus       318 YtL~y~~~g~~-~---~C~~~~~~~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~-S~-~~~~~~~~VkP~PP~nl~v~  391 (483)
T 3e0g_A          318 YTLVESFSGKY-V---RLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ-ST-ILVNITEKVYPHTPTSFKVK  391 (483)
T ss_dssp             EEEEETTTCCE-E---EECCCSSCSCSCEEEEEECCTTCCCEEEEEEEECSSCEEE-EE-EEECGGGGBCCCCCEEEEEC
T ss_pred             EEEEEEECCCC-c---cccCCcccCCCEEEEEEccCCCCcEEEEEEEEEeCCCCcc-cc-eEEEeccccCCCCCeeeEEE
Confidence            99998754221 0   01000   12345788888999999999999999988655 22 45554455666799999998


Q ss_pred             CCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecC--CcccEEEcCCCCccceEEEEEEEe
Q psy6638         166 PGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDN--QYEGELRIPGLTPYTKYAIVVRGY  243 (273)
Q Consensus       166 ~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~~~Y~~~v~a~  243 (273)
                      .  ..++.+.|+|++|..  .++.+..|+|+|+..+... +     +.......  .....+.+.+|+|++.|.|+|+|.
T Consensus       392 ~--~~stsl~LsW~~P~~--~~~~~L~YeVrYr~~~~~~-~-----~~~vsv~~~~~~~~s~~l~~L~PgT~Y~vrVRA~  461 (483)
T 3e0g_A          392 D--INSTAVKLSWHLPGN--FAKINFLCEIEIKKSNSVQ-E-----QRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCS  461 (483)
T ss_dssp             C--SSSSSCCEEEECCSC--CTTSBCCCEEEEECSSSCC-C-----EEECCCBCCSSSBCCCCCCSCCSSSSCEEEEECC
T ss_pred             E--ecCCeEEEEECCCCC--CCCceEEEEEEEEECCCCC-c-----eEEEEEeccCCceeEEEEeccCCCcEEEEEEEEe
Confidence            7  788999999999864  3566789999999876532 0     11112111  123367899999999999999999


Q ss_pred             cCCCc---CCCCccEEEEcCCC
Q psy6638         244 NSVGK---GPFSEPFIARTNEG  262 (273)
Q Consensus       244 n~~g~---~~~s~~~~~~t~~~  262 (273)
                       ..|.   |+||+.+.++|+++
T Consensus       462 -~~g~g~WSeWS~~~~f~T~E~  482 (483)
T 3e0g_A          462 -TETFWKWSKWSNKKQHLTTEA  482 (483)
T ss_dssp             -CSSCCCCCCCCCCCCCCCCCC
T ss_pred             -eCCCCCcCCCCCceeeECCCC
Confidence             6675   78888888999775

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.87  E-value=2.8e-20  Score=149.98  Aligned_cols=223  Identities=12%  Similarity=0.110  Sum_probs=153.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE----ecCCCCCcceEEEEeeccEEEEEEeCCCCCC-------ccc
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV----QETPEAPKNIRITEESSRSLQISWTAPYSGN-------TAI   86 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~----~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~-------~~~   86 (273)
                      +.|...++.+...|.+++.|.| .+.+........    ...+.||. +.+... ..++.|+|. |...+       +.+
T Consensus        65 ~~~t~~~l~~~~~Y~~rV~A~n-~~~S~~s~~~~~~~~~~~~~~pP~-v~~~~~-~~si~v~w~-P~~~~g~~~~~~~~~  140 (414)
T 3se4_A           65 CNFSSLKLNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEAE-DKAIVIHIS-PGTKDSVMWALDGLS  140 (414)
T ss_dssp             EECCSSCCCTTSCEEEEEEEEE-TTEEEEEECCCBCHHHHCCCCCCE-EEEEEC-SSCEEEEEE-CSSSSCTTTGGGGSS
T ss_pred             EECCcccccCCCcEEEEEEEee-CCcCCCEecCceeecccceeCCCe-EEEEEc-CCEEEEEEE-cCCCCCceeeeecCc
Confidence            3344456788899999999999 433322221111    23345664 665544 468999999 64222       356


Q ss_pred             eEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC--CCCCCCCcceEEEecCCCCCCCCeeEEe
Q psy6638          87 TQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP--LGMSETGAELQASTLEEAPNGAPREVTS  164 (273)
Q Consensus        87 ~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~--~g~~~~s~~~~~~~~~~~p~~~p~~~~~  164 (273)
                      .+|.|.|...+..-.     .........+.+.+|.|++.|.|+|+|.|.  .|.|.++....+.+....|..+|.++.+
T Consensus       141 ~~Y~v~y~~~~~~~~-----~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~  215 (414)
T 3se4_A          141 FTYSLVIWKNSSGVE-----ERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEV  215 (414)
T ss_dssp             CEEEEEEEETTTCCE-----EEEEEECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEE
T ss_pred             EEEEEEEEECCCCce-----EEEecCCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEE
Confidence            799999988765311     112334578999999999999999999994  6778888888888877767778889988


Q ss_pred             cCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEc------CCCCccceeeeeeeEE-ecCCcccEEEcC-CCCccceE
Q psy6638         165 DPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQIS------SGSSLALSSYTLKSVE-LDNQYEGELRIP-GLTPYTKY  236 (273)
Q Consensus       165 ~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~i~-~L~p~~~Y  236 (273)
                      ..  .+ .++.|.|+++..      ..+|.|+|+..      +....     .+.... ........+.+. +|.+++.|
T Consensus       216 ~~--~~-~~~~l~W~pp~~------~~~Y~v~y~~~~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~t~~l~~~~~Y  281 (414)
T 3se4_A          216 SV--QN-QNYVLKWDYTYA------NMTFQVQWLHAFLKRNPGNHLY-----KWKQIPDCENVKTTQCVFPQNVFQKGIY  281 (414)
T ss_dssp             EE--ET-TEEEEEEECSSS------SCEEEEEEEESGGGSCCCC--C-----CCCBCSTTTTBSSSEEEEEGGGSCSSEE
T ss_pred             EE--ec-CCeEEEECCCCC------CeEEEEEEEehhcccccccccc-----CceECCCccCCCCCEEcCCcccccCccE
Confidence            76  44 679999999743      24999999974      11000     111110 011123455565 69999999


Q ss_pred             EEEEEEecCCCcCCCCccEEEEcCCCC
Q psy6638         237 AIVVRGYNSVGKGPFSEPFIARTNEGD  263 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~~~~t~~~~  263 (273)
                      .|+|+|.|..|.|++|+...|.|.++.
T Consensus       282 ~~rV~A~n~~g~s~~s~~~~~~t~~~~  308 (414)
T 3se4_A          282 LLRVQASDGNNTSFWSEEIKFDTEIQA  308 (414)
T ss_dssp             EEEEEEECSSSEEEECCCEEEETTCC-
T ss_pred             EEEEEEecCCCcccccccccccchhcc
Confidence            999999999999999999999887663

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.87  E-value=3.6e-19  Score=142.51  Aligned_cols=229  Identities=20%  Similarity=0.204  Sum_probs=157.6

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEE-EEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRI-TEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~-~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      +.....|.|.++.++|.|.|+|.|.|..|.....+.+.+..+|........ .......+.|.+.....   +.  ..+.
T Consensus        59 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~---p~--~~i~  133 (389)
T 2jll_A           59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSN---PP--ASIH  133 (389)
T ss_dssp             CSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEE---SC--CEEE
T ss_pred             cCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEec---CC--CeEE
Confidence            345678999999999999999999999999888888888877753222222 22345556666643211   11  2455


Q ss_pred             EEeCCCCCCC---ccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCcc
Q psy6638          93 YKSSEEMWPT---QPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVV  169 (273)
Q Consensus        93 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~  169 (273)
                      |...+.....   .............+.|.++.....+.|+|.|.|..|.....  ....  ...++.+|..+.+..  .
T Consensus       134 W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~--~~l~--v~~~P~~P~~~~~~~--~  207 (389)
T 2jll_A          134 WRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQE--YILA--LADVPSSPYGVKIIE--L  207 (389)
T ss_dssp             EEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEE--EEEE--ECCCCCCCEEEEEEE--E
T ss_pred             EEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEE--EEEE--ecCCCCCCcceEEee--c
Confidence            5554321110   01122223345678899999999999999999988853221  2222  123445777777776  7


Q ss_pred             CCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcC
Q psy6638         170 DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG  249 (273)
Q Consensus       170 ~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~  249 (273)
                      ...++.|.|.+|.... +.++.+|.|+|+..+...       +.... .......++|.+|.+++.|.|+|.|.|..|.|
T Consensus       208 ~~~~~~l~w~~p~~~~-g~pi~~y~v~~~~~~~~~-------~~~~~-~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~  278 (389)
T 2jll_A          208 SQTTAKVSFNKPDSHG-GVPIHHYQVDVKEVASEI-------WKIVR-SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG  278 (389)
T ss_dssp             CSSCEEEEEECCSCCT-TSCEEEEEEEEEETTCSC-------CEEEE-CSTTCSEEEECSCCTTCEEEEEEEEEESSCBC
T ss_pred             cCCEEEEEEeCCCCCC-CcceEEEEEEEEECCCcc-------cEEee-ccCCcceEEECCccCCCEEEEEEEEEcCCccC
Confidence            8889999999876532 347889999999876532       22222 22335689999999999999999999999999


Q ss_pred             CCCccEEEEcCCC
Q psy6638         250 PFSEPFIARTNEG  262 (273)
Q Consensus       250 ~~s~~~~~~t~~~  262 (273)
                      .++....+.|.+.
T Consensus       279 ~~s~~~~~~t~~~  291 (389)
T 2jll_A          279 DYSKIEIFQTLPV  291 (389)
T ss_dssp             CCCCCEEEECCCC
T ss_pred             CCCcceEEEecCC
Confidence            9999888888654

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.86  E-value=3.4e-21  Score=143.02  Aligned_cols=174  Identities=17%  Similarity=0.156  Sum_probs=108.0

Q ss_pred             CCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCee
Q psy6638          82 GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPRE  161 (273)
Q Consensus        82 ~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~  161 (273)
                      .+..+.+|.+++......+.    ........+.+.+.+|.|++.|.|+|+|.|..|.+.++....+.+....|+.+|..
T Consensus        18 ~~~~Vt~Y~~~~~~~~~~~~----~~~~~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~~   93 (232)
T 4go6_B           18 TNVMVTHYFLPPDDAVPSDD----DLGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCA   93 (232)
T ss_dssp             SEEEECEEECCCC----------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCEE
T ss_pred             CCEEEEEEEEEeeCCCCCcE----EEEECCCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCCee
Confidence            34467788887655433322    11222345678899999999999999999999999888888888776666666655


Q ss_pred             EEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccc------eeeeeeeEEecCCcccE-------EEcC
Q psy6638         162 VTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL------SSYTLKSVELDNQYEGE-------LRIP  228 (273)
Q Consensus       162 ~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-------~~i~  228 (273)
                      +.. .  .+.+++.|.|.+|..  .+|.|++|.|+|+..+......      ....+............       +.+.
T Consensus        94 ~~~-~--~~~~sv~l~W~~P~~--~~G~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (232)
T 4go6_B           94 IKI-S--KSPDGAHLTWEPPSV--TSGKIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHI  168 (232)
T ss_dssp             EEE-E--EETTEEEEEEECCSC--CSSCCCEEEEEEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTBCB
T ss_pred             eEE-e--cCCCEEEEEEeCCCC--CCCceeeEEEEEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeee
Confidence            443 3  478899999999976  4789999999998765432110      00111111111111122       2356


Q ss_pred             CCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCC
Q psy6638         229 GLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDF  264 (273)
Q Consensus       229 ~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P  264 (273)
                      +|.+++.|.|+|+|.|..|.|++|+...+.+....|
T Consensus       169 ~L~~~t~Y~frV~A~N~~G~Gp~S~v~t~~~~~~~p  204 (232)
T 4go6_B          169 DYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDS  204 (232)
T ss_dssp             EESSSEEEEEEEEEECSSCBCCCEEEEEECC-----
T ss_pred             cCccCCceEEEEEEECCCcCCCCcccEEeccCCCCC
Confidence            789999999999999999999998766665555444

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A

Probab=99.86  E-value=1.8e-20  Score=139.23  Aligned_cols=193  Identities=18%  Similarity=0.247  Sum_probs=125.5

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCcc-ceEEEEEEEeCCCC-----CCCccceEEecCCccEEEecCCCCCCe
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTA-ITQYIIQYKSSEEM-----WPTQPLKIIVPGSQTSATLQPLLPATQ  126 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~-~~~y~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (273)
                      ..+|..|+++.........+.|.|.++..++.+ ...|.+.|......     +.............+.+...+|.++..
T Consensus        27 ~~pP~~P~~l~C~~~~~~~~~c~W~p~~~~~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~~l~~~~~  106 (236)
T 1axi_B           27 TNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIP  106 (236)
T ss_dssp             -----CCCEEEEEBSSSSCEEEEECCC--------CSCEEEEEECC------CCEECSCSSTTCTTEEEECGGGCCSSSE
T ss_pred             CCCCCCCcCCeEEeCCCCEEEEEecCCCCCCCCCCceEEEEEEeCCCCcCCCceeeCCCCCCCCCEEEEECCcCCcccce
Confidence            458889999987777788999999976543332 24677877654321     211000000011334555677899999


Q ss_pred             EEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEE--ecCCccCC----ceEEEEEeCCCCC-Cccc-eeeeEEEEEE
Q psy6638         127 YQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVT--SDPGVVDP----TELLIKWKAPPRE-SWNG-VLLGYDVGYQ  198 (273)
Q Consensus       127 y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~--~~~~~~~~----~~i~l~W~~~~~~-~~~~-~i~~y~v~~~  198 (273)
                      |.|+|.| | .+   .+....+.....+.+.||.++.  +..  .+.    ..+.|+|++|... ..+| .++.|+|+|+
T Consensus       107 Y~~~V~a-N-~~---~s~~~~~~~~~~v~p~pP~~l~~~~~~--~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry~  179 (236)
T 1axi_B          107 YCIKLTS-N-GG---TVDEKCFSVDEIVQPDPPIALNWTLLN--VSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYK  179 (236)
T ss_dssp             EEEEEEE-T-TE---EEEEEEEEGGGGBCCCCCEEEEEEECS--CCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEE
T ss_pred             EEEEEEE-C-Cc---cCCCeEeecccccccCCCcccEEEEEe--cccCCCCceEEEEECCCCCccccCCceeeEEEEEEE
Confidence            9999999 7 22   2344555555556667999985  444  333    3599999999753 2355 6789999999


Q ss_pred             EcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCC--cCCCCccEEEEcCC
Q psy6638         199 ISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVG--KGPFSEPFIARTNE  261 (273)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g--~~~~s~~~~~~t~~  261 (273)
                      ..+...       +....  ......++|.+|+|++.|.|+|+|.+..|  .|+||+.+.+.|+.
T Consensus       180 ~~~~~~-------w~~~~--~~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~~~~~~p~  235 (236)
T 1axi_B          180 EVNETK-------WKMMD--PILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLPQ  235 (236)
T ss_dssp             ETTCSS-------CEECC--CBSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCCEEECCCC
T ss_pred             ECCCCc-------eEEEe--ccCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCCEEEECCC
Confidence            886432       11111  12247899999999999999999999888  89999999998875

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}

Probab=99.86  E-value=4.5e-20  Score=133.80  Aligned_cols=182  Identities=20%  Similarity=0.275  Sum_probs=133.1

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCC
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL  137 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~  137 (273)
                      +|+++.+..... ...|.|.++...++.+ .|.|+|+.. +.|..    .+.....+.+.|.+|.+...|.+||+|.+..
T Consensus         4 ~P~nv~~~s~n~-~~iL~W~pp~~~~~~v-~Y~V~y~~~-~~w~~----~c~~~~~~~c~lt~l~~~~~Y~~rV~A~~~~   76 (201)
T 3lqm_A            4 PPENVRMNSVNF-KNILQWESPAFAKGQL-TFTAQYLSY-RIFQD----KCMQTTLTECDFSSLSKYGDHTLRVRAEFAD   76 (201)
T ss_dssp             CCEEEEEEEETT-EEEEEEECCCCSSSCC-EEEEEEEET-TEEEE----EEEEESSSEEECTTSCSSSCEEEEEEEEETT
T ss_pred             CCcccEEEEECC-ceEEEECCCCCCCCCe-EEEEEEEEC-CCccc----CcCccCCCEEECCCCccCCCEEEEEEEecCC
Confidence            688888776554 5679999987655555 599999986 34651    2333366789999999999999999999988


Q ss_pred             CCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccc---------eeeeEEEEEEEcCCCCccce
Q psy6638         138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNG---------VLLGYDVGYQISSGSSLALS  208 (273)
Q Consensus       138 g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~---------~i~~y~v~~~~~~~~~~~~~  208 (273)
                      |.|.++.. .+........+|| .+.+..   ..++|.|.|.+|.... ++         .+..|+|.|+..+....   
T Consensus        77 ~~S~~s~~-~f~~~~~t~~~PP-~v~~~~---~~~si~v~w~~P~~~~-~~~~~~~~~~~~~l~Y~v~y~~~~~~~~---  147 (201)
T 3lqm_A           77 EHSDWVQI-TFSPVDDTIIGPP-GMQVEV---LADCLHMRFLAPKIEN-EYETWTMKNVYNSWTYNVQYWKQGTDEK---  147 (201)
T ss_dssp             EECCCEEE-EECHHHHSBCCCC-EEEEEE---ETTEEEEEEECCEEEC-SSCEEEHHHHCTTCEEEEEEEETTCCCC---
T ss_pred             CcCcceee-eeeecccCeeCCC-EEEEEE---eCCEEEEEEcCCCccC-CCcccCHHHhCCceEEEEEEEECCCCcE---
Confidence            87877653 4432222233455 577644   5689999999996421 23         26899999998755321   


Q ss_pred             eeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecC--CCcCCCCccEEEEcCCC
Q psy6638         209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS--VGKGPFSEPFIARTNEG  262 (273)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~--~g~~~~s~~~~~~t~~~  262 (273)
                          ...   ......++|.+|+|++.|.|+|+|.+.  .|.|.+|+.+.+.|.++
T Consensus       148 ----~~~---~~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~~~  196 (201)
T 3lqm_A          148 ----FQI---TPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHD  196 (201)
T ss_dssp             ----EEE---CCSSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCCCEEEECCCG
T ss_pred             ----EEE---EecCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCCCEeEEeCCC
Confidence                111   123468999999999999999999986  68899999999998765

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.85  E-value=3.2e-20  Score=142.82  Aligned_cols=190  Identities=16%  Similarity=0.209  Sum_probs=133.3

Q ss_pred             cCCCCCcceEEEEe-----eccEEEEEEeCCC--CCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCe
Q psy6638          54 ETPEAPKNIRITEE-----SSRSLQISWTAPY--SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQ  126 (273)
Q Consensus        54 ~~P~~p~~~~~~~~-----~~~~~~l~W~~~~--~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (273)
                      .+|..|.++.....     ..+++.|.|+++.  ..++.+.+|.|+++.....+.    .  .....  ..+.+|.+++.
T Consensus         2 ~~Ps~p~~~~~~~~~~~~~g~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~~~----~--~~~~~--~~~~~l~p~t~   73 (290)
T 3l5i_A            2 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----N--YTVNA--TKLTVNLTNDR   73 (290)
T ss_dssp             CCCSSCCCEEEEEEECSSTTCEEEEEEECCCCHHHHCSCEEEEEEEEEETTSCCE----E--EEESS--SEEEEEECSSC
T ss_pred             CCCCCCCceeEEecccccCCCceEEEEEccCCchhcCCceEeEEEEEEeCCcCce----e--EecCC--cEEEEEcCCce
Confidence            46777776654332     2589999999843  467789999999998654321    1  11122  24567899999


Q ss_pred             EEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCcc
Q psy6638         127 YQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLA  206 (273)
Q Consensus       127 y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~  206 (273)
                      |.|+|.|.|..|.+.++. +.+......++.++.++.+..  . .+++.|+|+++..     .+.+|.|+|+..+.....
T Consensus        74 Y~~~V~A~n~~G~s~~s~-~~~~~~~~~~~~p~~~~~~~~--~-~~si~l~W~~p~~-----~i~~Y~v~~~~~~~~~~~  144 (290)
T 3l5i_A           74 YLATLTVRNLVGKSDAAV-LTIPACDFQATHPVMDLKAFP--K-DNMLWVEWTTPRE-----SVKKYILEWCVLSDKAPC  144 (290)
T ss_dssp             EEEEEEEEESSCBCCCEE-EEECCTTCCCCCCCEEEEEEE--E-TTEEEEEEECCSS-----CCCEEEEEEEEECSSSCC
T ss_pred             EEEEEEEEcCCCCCCCce-EEeecccccCCCccceeEEEe--C-CCeEEEEEeCCCC-----CCCcEEEEEEECCCCCCC
Confidence            999999999999876542 222222224556777888766  4 4699999999854     578999999987654211


Q ss_pred             ceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         207 LSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                        ...+...  .......+.+.+|.|++.|.|+|+|+|..|.|. +..+.+.|.+.+|.
T Consensus       145 --~~~~~~~--~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~-~~~~~~~t~~~~P~  198 (290)
T 3l5i_A          145 --ITDWQQE--DGTVHRTYLRGNLAESKCYLITVTPVYADGPGS-PESIKAYLKQAPPS  198 (290)
T ss_dssp             --CCEEEEE--ETTCSEEECCSCCCTTCEEEEEEEEEETTEECC-CEEEEEESSCCCCS
T ss_pred             --CcCeEEc--cCCCcceEEecCcCCccEEEEEEEEEeCCcccc-cEEEEeEccccCCC
Confidence              1112222  334456788999999999999999999999987 45677778877664

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.84  E-value=3.9e-20  Score=162.02  Aligned_cols=140  Identities=16%  Similarity=0.266  Sum_probs=108.9

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCC-CCccceEEEEEEEeC---------------CCCCCCccceEEec------CCccE
Q psy6638          58 APKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSS---------------EEMWPTQPLKIIVP------GSQTS  115 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~---------------~~~~~~~~~~~~~~------~~~~~  115 (273)
                      .|.++++...+.+++.|+|.++.. +.+++.+|.|+|+..               ...|..........      ...+.
T Consensus       471 ~~~~l~v~~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~~~  550 (897)
T 2dtg_E          471 ELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPG  550 (897)
T ss_dssp             CBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCE
T ss_pred             ceeEEEEEEEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccccc
Confidence            455778888899999999999864 445899999998764               13454322111100      12578


Q ss_pred             EEecCCCCCCeEEEEEEE-eCCCCC----CCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCcccee
Q psy6638         116 ATLQPLLPATQYQVRLLA-ENPLGM----SETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVL  190 (273)
Q Consensus       116 ~~~~~l~~~~~y~~~v~a-~~~~g~----~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i  190 (273)
                      +.+.+|.|++.|.|+|+| .+..|.    +.++..+.++|...+| .+|.++.+..  .+++++.|+|++|..  .+|.+
T Consensus       551 ~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~P-s~P~~l~~~~--~s~tsI~LsW~pP~~--~nG~I  625 (897)
T 2dtg_E          551 WLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNP-SVPLDPISVS--NSSSQIILKWKPPSD--PNGNI  625 (897)
T ss_dssp             EEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCC-CCCEEEEEEE--CSSSCEEEEEECCCC--SSSSC
T ss_pred             eEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCC-cCCcceEEEe--CCCCEEEEEEeCCCC--CCCCe
Confidence            899999999999999999 888886    6778888888887766 4889999988  889999999999965  57889


Q ss_pred             eeEEEEEEEcCC
Q psy6638         191 LGYDVGYQISSG  202 (273)
Q Consensus       191 ~~y~v~~~~~~~  202 (273)
                      .+|.|+|+..+.
T Consensus       626 ~~Y~V~~~~~~~  637 (897)
T 2dtg_E          626 THYLVFWERQAE  637 (897)
T ss_dssp             SEEECCEEEECC
T ss_pred             eEEEEEEEECCC
Confidence            999999987543

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.84  E-value=6e-19  Score=140.20  Aligned_cols=225  Identities=10%  Similarity=0.003  Sum_probs=118.7

Q ss_pred             EeeeeeCCCEEEEEEEEcC----CCCc--eeEEEEEE-----ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          22 IANVLRQDSGTLSCLATNY----HGTA--EMTIQLLV-----QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        22 i~~~~~~~~~~y~~~a~n~----~g~~--~~~~~~~~-----~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      ...+.....|.|+++|.|.    .|.+  +.......     ..+|.+|+++.+.......+.|+|+++... +....|.
T Consensus        92 ~~~~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~~~~l~csW~p~~~~-~~~~~Y~  170 (380)
T 3lb6_C           92 KDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGV-LLDTNYN  170 (380)
T ss_dssp             EEECCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEETTTEEEEEEECC-------CCEE
T ss_pred             EEeecCCCceEEEEEeecCCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEECCCcEEEEEEcCCCCC-CCCccEE
Confidence            3345557899999999943    3433  22222222     234568999999888899999999987543 3456899


Q ss_pred             EEEEeCCCC-CCCccceEEecCCccEEEec--CCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCC
Q psy6638          91 IQYKSSEEM-WPTQPLKIIVPGSQTSATLQ--PLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPG  167 (273)
Q Consensus        91 v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~  167 (273)
                      +.|+..+.. +..........+....+.+.  ++.....|.|+|.|.|..|.+. +..+.+.+...+++.||.++++.. 
T Consensus       171 l~y~~~~~~~~~~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~-s~~~~~~~~~~v~p~pP~~l~v~~-  248 (380)
T 3lb6_C          171 LFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIR-SSYFTFQLQNIVKPLPPVYLTFTR-  248 (380)
T ss_dssp             EEEECTTCSSCEECSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CC-CEEEEECGGGSCCCCCCEEEEEC--
T ss_pred             EEEEECCCCccccCCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeec-cccEEEcHHHcccCCCCceEEEEE-
Confidence            999875432 22111111112233345554  5678889999999999877554 333566666666778999999987 


Q ss_pred             ccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCC-CCccceEEEEEEEec--
Q psy6638         168 VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG-LTPYTKYAIVVRGYN--  244 (273)
Q Consensus       168 ~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-L~p~~~Y~~~v~a~n--  244 (273)
                       .+.+.+.|+|++|.... .+.+.+|+|+|+..+..+        .....    ...+.+.+ |+|++.|.|+|+|..  
T Consensus       249 -~~~~~l~l~W~~P~~~~-~~~~l~Yev~y~~~~~~w--------~~~~~----~~~~~l~~~L~p~t~Y~~qVRa~~~~  314 (380)
T 3lb6_C          249 -ESSCEIKLKWSIPLGPI-PARCFDYEIEIREDDTTL--------VTATV----ENETYTLKTTNETRQLCFVVRSKVNI  314 (380)
T ss_dssp             -------CEEEECCSSSC-CSTTEEEEECC----------------CCEE----SSSCC------------CCEEEEECT
T ss_pred             -cCCCeEEEEECCCCCCC-CcceEEEEEEEEeCCCCc--------eEecc----cceEEEeCccCCCcEEEEEEEEEEcc
Confidence             67789999999987531 246789999999854321        11111    12467888 999999999999994  


Q ss_pred             ---CCC-cCCCCccEEEEcCCCC
Q psy6638         245 ---SVG-KGPFSEPFIARTNEGD  263 (273)
Q Consensus       245 ---~~g-~~~~s~~~~~~t~~~~  263 (273)
                         ..| .|+||+.+.+.|+++.
T Consensus       315 ~~~~~g~WSeWS~~~~~~t~~~~  337 (380)
T 3lb6_C          315 YCSDDGIWSEWSDKQCWEGEDLS  337 (380)
T ss_dssp             TTCSSCCCCCCCCC---------
T ss_pred             cCCCCCCCCCCCCCEEEeCCCCC
Confidence               334 3788888999988653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.83  E-value=2.9e-18  Score=132.74  Aligned_cols=233  Identities=21%  Similarity=0.230  Sum_probs=153.1

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC--CCcce----EEEEeeccEEEEEEeCCCCCCccce
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE--APKNI----RITEESSRSLQISWTAPYSGNTAIT   87 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~--~p~~~----~~~~~~~~~~~l~W~~~~~~~~~~~   87 (273)
                      .+..+.|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.  .|..+    .+.......+.|.+......  .. 
T Consensus        58 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p--~p-  134 (305)
T 2nzi_A           58 KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP--DP-  134 (305)
T ss_dssp             TTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEES--CC-
T ss_pred             CCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCC--CC-
Confidence            34456899999999999999999999998877777777765543  22110    12222345566665532111  11 


Q ss_pred             EEEEEEEeCCCCCCCc-cceEEecCCccEEEecC-CCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEec
Q psy6638          88 QYIIQYKSSEEMWPTQ-PLKIIVPGSQTSATLQP-LLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSD  165 (273)
Q Consensus        88 ~y~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~  165 (273)
                        .+.|...+...... ............+.+.+ +.....+.|+|.|.|..|....+..+.+.    .++.+|.++.+.
T Consensus       135 --~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~----~~P~~p~~~~~~  208 (305)
T 2nzi_A          135 --VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA----DVPDPPRGVKVS  208 (305)
T ss_dssp             --EEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEE----BCCCCCEEEEEE
T ss_pred             --EEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEe----cCCCCCCCceee
Confidence              35555544321111 11222333456788888 99999999999999998864433323322    344578888887


Q ss_pred             CCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecC
Q psy6638         166 PGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS  245 (273)
Q Consensus       166 ~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  245 (273)
                      .  ....++.|.|.+|.... +..+..|.++++......       |.......  ...++|.+|.+++.|.|++.|.|.
T Consensus       209 ~--~~~~~v~l~w~~p~~~g-~~~i~~y~v~~~~~~~~~-------w~~~~~~~--~~~~~i~~l~~~~~y~~~~~A~N~  276 (305)
T 2nzi_A          209 D--VSRDSVNLTWTEPASDG-GSKITNYIVEKCATTAER-------WLRVGQAR--ETRYTVINLFGKTSYQFRVIAENK  276 (305)
T ss_dssp             S--CCSSCEEEEEECCSCCS-BSCEEEEEEEEEETTSCC-------EEEEEEES--SSEEEECSCCSSCEEEEEEEEEET
T ss_pred             e--ccCCEEEEEEcCCccCC-CCceeEEEEEEecCCCCc-------cEECcccc--CceEEecCCCCCCeEEEEEEEEeC
Confidence            7  78999999999876532 457899999998875432       22222111  468999999999999999999999


Q ss_pred             CCcCCCCccEE-EEcCCCCCccc
Q psy6638         246 VGKGPFSEPFI-ARTNEGDFLFL  267 (273)
Q Consensus       246 ~g~~~~s~~~~-~~t~~~~P~~~  267 (273)
                      .|.|++|.... +.|++..|..+
T Consensus       277 ~G~~~~S~~~~~~~t~~~~p~~~  299 (305)
T 2nzi_A          277 FGLSKPSEPSEPTITKEDKTRAM  299 (305)
T ss_dssp             TEECCCCCCCCCEECCC------
T ss_pred             CcccCCcCCCCCEEcCCcccccc
Confidence            99999887655 45666666543

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=2.6e-20  Score=124.73  Aligned_cols=122  Identities=21%  Similarity=0.349  Sum_probs=102.6

Q ss_pred             EEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCcccee
Q psy6638         130 RLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS  209 (273)
Q Consensus       130 ~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~  209 (273)
                      +|+|.|..|.+.++..+.+.+....|..+|.++++..  .+.+++.|.|++|.....++.+.+|.|+|+..+...+    
T Consensus         3 ~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~--~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~----   76 (124)
T 2ed9_A            3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEV--VNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGE----   76 (124)
T ss_dssp             SCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEE--EETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCC----
T ss_pred             eEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEE--cCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcc----
Confidence            5778999999988888889988888877888888877  7889999999999875457889999999998765421    


Q ss_pred             eeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       210 ~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                         ..  ........+.|.+|+|++.|.|+|+|.|..|.|++|+.+.++|.++
T Consensus        77 ---~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~ed  124 (124)
T 2ed9_A           77 ---ME--TLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPEN  124 (124)
T ss_dssp             ---EE--EECSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEEECCCC
T ss_pred             ---eE--EecCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEEECCCC
Confidence               11  1334467899999999999999999999999999999999999864

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=4.2e-19  Score=118.66  Aligned_cols=118  Identities=26%  Similarity=0.328  Sum_probs=94.0

Q ss_pred             CCCCCCcceEEEecCCCCCCCCeeEEec-CCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEE
Q psy6638         138 GMSETGAELQASTLEEAPNGAPREVTSD-PGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE  216 (273)
Q Consensus       138 g~~~~s~~~~~~~~~~~p~~~p~~~~~~-~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~  216 (273)
                      |.|.++..+.+.+.+.+|..+|.++++. .  .+.+++.|.|++|.....+|.|.+|.|+|+......  ..  .+... 
T Consensus         1 G~g~~S~~v~~~T~~~~P~~~P~~~~~~~~--~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~--~~--~~~~~-   73 (124)
T 2dbj_A            1 GSSGSSGWILASTTEGAPSVAPLNVTVFLN--ESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGI--SK--ELLEE-   73 (124)
T ss_dssp             CCSCCCCCCCCCCSSCCCCSCCEEEEEEEC--SSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTE--EE--EEEEE-
T ss_pred             CcCCCCCCEEEEccCCCCCCCCcceEEEec--CCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCC--cc--ceEEE-
Confidence            5677888899999998898899999887 6  678999999999964446889999999997543221  00  11111 


Q ss_pred             ecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCC
Q psy6638         217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGD  263 (273)
Q Consensus       217 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~  263 (273)
                       .......++|.+|.+++.|.|+|+|+|..|.|++|+.+.++|.++.
T Consensus        74 -~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~Gp~S~~~~~~T~~~~  119 (124)
T 2dbj_A           74 -VGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHS  119 (124)
T ss_dssp             -EESTTSCEEEECCCSSSEEEECEEEEESSCBCCCCCCEEEECCCSC
T ss_pred             -eCCCcceEEecCCCCCCEEEEEEEEECCCccCCCCCCEEEEcCCCC
Confidence             1233578999999999999999999999999999999999998763

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.2e-18  Score=118.17  Aligned_cols=120  Identities=29%  Similarity=0.516  Sum_probs=97.5

Q ss_pred             CCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEe
Q psy6638         138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL  217 (273)
Q Consensus       138 g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~  217 (273)
                      |.|.++..+.+.+....|+.+|.++++..  .+.+++.|.|++|.....++.+.+|.|+|+..+.....     ......
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~--~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~-----~~~~~~   73 (134)
T 2edx_A            1 GSSGSSGTIEARTAQSTPSAPPQKVMCVS--MGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRG-----RHVVDG   73 (134)
T ss_dssp             CCCCCCCCCCCSSCCSCCSSCSEEEEEEC--SSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCC-----CEEECC
T ss_pred             CCCCCcCCEEEEeCCCCCCCCCcccEEEe--CCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcc-----cEEEEe
Confidence            56778888889998888877899999988  88999999999995433578899999999987654211     111222


Q ss_pred             cCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCC
Q psy6638         218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDF  264 (273)
Q Consensus       218 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P  264 (273)
                      .......++|.+|+|++.|.|+|+|+|..|.|++|..+.++|.+++|
T Consensus        74 ~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P  120 (134)
T 2edx_A           74 ISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVP  120 (134)
T ss_dssp             CBTTCSEEEEESCCTTCEEEEEEEEEETTBCCCCCCCEEEECCCCSS
T ss_pred             eCCCccEEEeCCCCCCCEEEEEEEEEcCCCcCCCCCCEEeecCCCCC
Confidence            23456899999999999999999999999999999999999998776

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=3e-19  Score=118.98  Aligned_cols=119  Identities=28%  Similarity=0.458  Sum_probs=96.7

Q ss_pred             CCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEe
Q psy6638         138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL  217 (273)
Q Consensus       138 g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~  217 (273)
                      |.|.++..+.+.+....|+.+|.++++..  .+.+++.|+|++|..  .++.|.+|.|+|+..+.....    .+...  
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~--~~~~sv~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~----~~~~~--   70 (121)
T 2dlh_A            1 GSSGSSGPVLTQTSEQAPSSAPRDVQARM--LSSTTILVQWKEPEE--PNGQIQGYRVYYTMDPTQHVN----NWMKH--   70 (121)
T ss_dssp             CCCCCCSSSCSCCCCCCCCSCCEEEEECC--CSSSBCCEEEECCSC--CCSCEEEEEEECCSCTTSCTT----TSCCC--
T ss_pred             CCCCCCCCEEEECCCcCCCCCCcccEEEe--cCCCEEEEEECCCCC--CCCcEeEEEEEEEeCCCCCcc----ccEEE--
Confidence            56778888888998888888999999988  899999999999865  478899999999876432110    01111  


Q ss_pred             cCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       218 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      .......++|.+|+|++.|.|+|+|+|..|.|++|+.+.++|.+++|+.
T Consensus        71 ~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~~  119 (121)
T 2dlh_A           71 NVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGPS  119 (121)
T ss_dssp             CCSSCSEECCBSCCSSCEEEEEEEEEESSCBCCCCCCEEEECCCCCSCC
T ss_pred             ecCCceEEEecCCCCCCEEEEEEEEEeCCccCCCCCCEEEECCCCCCCC
Confidence            1223578999999999999999999999999999999999999998875

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.80  E-value=2.6e-19  Score=120.86  Aligned_cols=125  Identities=19%  Similarity=0.331  Sum_probs=101.0

Q ss_pred             EEEeCCCCCCCCCc-ceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCcccee
Q psy6638         131 LLAENPLGMSETGA-ELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS  209 (273)
Q Consensus       131 v~a~~~~g~~~~s~-~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~  209 (273)
                      |+|.|..|.+.++. .+.+.+....| .+|.++.+..  .+.+++.|+|++|..  .++.|.+|.|+|+..+.....   
T Consensus         3 V~A~n~~G~g~~S~~~~~~~t~~~~P-~~P~~l~~~~--~~~~sv~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~---   74 (130)
T 1wfo_A            3 SGSSGRIGDGSPSHPPILERTLDDVP-GPPMGILFPE--VRTTSVRLIWQPPAA--PNGIILAYQITHRLNTTTANT---   74 (130)
T ss_dssp             CCCCCCCCCCCCCCCCSCCCCSCCCC-CCCCCCEEEE--ECSSEEEEECCCCSC--CCSCCCEEEEEEEESSCCCSC---
T ss_pred             eEEEecccCCCCCCCcEEEEcCCCCC-CCCCceEEEe--cCCCEEEEEEcCCCC--CCCceEEEEEEEEECCCCCce---
Confidence            56889999998886 47788877777 4888888888  889999999999875  478899999999987643211   


Q ss_pred             eeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       210 ~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                        +. ..........++|.+|+|++.|.|+|+|.|..|.|++|..+.++|.+.+|+.
T Consensus        75 --~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pp~  128 (130)
T 1wfo_A           75 --AT-VEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSGPS  128 (130)
T ss_dssp             --CC-EEEECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCSSCCCCC
T ss_pred             --EE-EEEeCCCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEecCCCCCCC
Confidence              11 1123344689999999999999999999999999999999999999887764

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=1e-18  Score=115.93  Aligned_cols=116  Identities=26%  Similarity=0.359  Sum_probs=94.1

Q ss_pred             CCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEe
Q psy6638         138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL  217 (273)
Q Consensus       138 g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~  217 (273)
                      |.|.++..+.+.+....|+.+|.++++..  .+.+++.|+|++|..    +.|.+|.|+|+..+.....     ......
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~--~~~~sv~l~W~~p~~----g~i~~Y~v~~~~~~~~~~~-----~~~~~~   69 (119)
T 2ee2_A            1 GSSGSSGVAVINSAQDAPSEAPTEVGVKV--LSSSEISVHWEHVLE----KIVESYQIRYWAAHDKEEA-----ANRVQV   69 (119)
T ss_dssp             CCCCCSSCCCCCCCSCCCCCCCCSCEEEE--EETTEEEEECCCCSC----TTCCEEEEEEEESSSCGGG-----CEEEEE
T ss_pred             CCCCCCCCEEEECCCcCCCCCCCcEEEEE--ccCCEEEEEecCCCC----CccceEEEEEEECCCcccC-----cEEEEc
Confidence            55677888888898888888888898887  889999999999975    6789999999887543211     111111


Q ss_pred             cCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       218 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                       ......++|.+|+|++.|.|+|+|+|..|.|++|..+.++|.+.+|+
T Consensus        70 -~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pp  116 (119)
T 2ee2_A           70 -TSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASGP  116 (119)
T ss_dssp             -ETTCSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEECCCCCCS
T ss_pred             -CCCEeEEEECCCCCCCEEEEEEEEEcCCccCCCCCCEEEECCCCCCC
Confidence             22346899999999999999999999999999999999999988775

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.79  E-value=7.7e-19  Score=118.87  Aligned_cols=116  Identities=26%  Similarity=0.427  Sum_probs=95.8

Q ss_pred             CCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEe
Q psy6638         138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL  217 (273)
Q Consensus       138 g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~  217 (273)
                      |.|.++..+.+.+...+|..+|.++++..  .+.+++.|+|++|.....++.+.+|.|+|+..+...       ......
T Consensus         1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~--~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~-------~~~~~~   71 (132)
T 1x5h_A            1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEV--RNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKS-------DVTETL   71 (132)
T ss_dssp             CCCCCCCCCCCCCCCSSCCCCCEEEEEEC--CSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEE-------EEECCB
T ss_pred             CcCCCCCCEEEeCCCCCCCCCCeeeEEEe--CCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCC-------ccEEEE
Confidence            56778888899998888887899999988  899999999999986545789999999999865321       111111


Q ss_pred             cCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       218 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      .......++|.+|+|++.|.|+|+|+|..|.|++|..+.++|.+.
T Consensus        72 ~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~  116 (132)
T 1x5h_A           72 VSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFES  116 (132)
T ss_dssp             CCTTCCEEEEECCCSSCEEEEECEEEETTEEEEECCCEEEECCSS
T ss_pred             eCCCccEEEeCCCCCCCEEEEEEEEEcCCccCCCCcCEEeEcCcc
Confidence            344568999999999999999999999999999999999999874

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.79  E-value=4.2e-17  Score=119.58  Aligned_cols=190  Identities=20%  Similarity=0.206  Sum_probs=134.3

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCC--CCCeEEEEEEE
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLL--PATQYQVRLLA  133 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~y~~~v~a  133 (273)
                      .+|+++++.+.+... .|.|+++.........|.|+|+..+ ..|.....+  .+...+.+.|.++.  ....|.+||+|
T Consensus        10 p~P~nv~~~s~n~~~-iL~W~p~~~~~~~~~~Y~Vqy~~~~~~~W~~~~~C--~~~~~~~Cdlt~~~~~~~~~Y~~RV~A   86 (221)
T 4doh_R           10 PKPANITFLSINMKN-VLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSEC--RNINRTYCDLSAETSDYEHQYYARVRA   86 (221)
T ss_dssp             -CCEEEEEEEETTEE-EEEEECCCCSSCCCCEEEEEEEETTSCCCEECGGG--SSBSSSEEECTTTTCCSSCCEEEEEEE
T ss_pred             CCCceeEEEEECCcE-EEEEcCCCCCCCCCeEEEEEEEECCCCCceecccc--cCCCCCEEeCCCccccCCCCEEEEEEE
Confidence            368899888865544 6999997543356779999999753 467533322  22356778887764  56679999999


Q ss_pred             eCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCC--ccce---------eeeEEEEEEEcCC
Q psy6638         134 ENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRES--WNGV---------LLGYDVGYQISSG  202 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~--~~~~---------i~~y~v~~~~~~~  202 (273)
                      ....+.+.|+....|........+||. +.+..   ...+|.|.|.+|....  .+|.         ...|+|.|+..++
T Consensus        87 ~~g~~~S~w~~~~~F~p~~~t~igPP~-v~v~~---~~~~l~V~~~~P~~~~~~~~~~~~s~~~i~~~l~Y~V~y~~~~~  162 (221)
T 4doh_R           87 IWGTKCSKWAESGRFYPFLETQIGPPE-VALTT---DEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKS  162 (221)
T ss_dssp             ESSSCBCCCEECCCBCHHHHCBCCCCE-EEEEC---CSSCEEEEEECCBCCCSSTTSCCCBHHHHSTTCEEEEEEEETTT
T ss_pred             EcCCcccCCEecCceechhhCccCCCE-EEEEE---CCCEEEEEEeCCCcccccCCCCceEHHHhcCceEEEEEEEECCC
Confidence            998888877766556544344445664 77765   6689999999987421  1221         3689999998865


Q ss_pred             CCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecC--CCcCCCCccEEEEcCCCC
Q psy6638         203 SSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS--VGKGPFSEPFIARTNEGD  263 (273)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~--~g~~~~s~~~~~~t~~~~  263 (273)
                      ...      .... .   ....+.|.+|.|++.|.|+|+|...  .|.|.+|..+.+.|..+.
T Consensus       163 ~~~------~~~~-~---~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~~d~  215 (221)
T 4doh_R          163 NRT------WSQC-V---TNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKDQ  215 (221)
T ss_dssp             TEE------EEEE-E---CSSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEEEECCCC-
T ss_pred             CcE------EEEe-e---cCcEEEEecCCCCCcEEEEEEEEEcCCCCCCCCCCCEeEecCCCc
Confidence            421      1111 1   1357899999999999999999974  688999999999998764

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A

Probab=99.79  E-value=5.1e-18  Score=125.54  Aligned_cols=193  Identities=19%  Similarity=0.246  Sum_probs=127.9

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEe---cCCccEEEe--cCCCCCCeEEEE
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIV---PGSQTSATL--QPLLPATQYQVR  130 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~l~~~~~y~~~  130 (273)
                      +..|.++.........+.|+|.++....+....|.+.|+..+..|.........   ......+.+  .++.....|.|+
T Consensus        21 ~~~P~nl~C~~~~~~~l~C~W~~~~~~~~~~~~y~l~y~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~~~y~~~  100 (227)
T 1eer_B           21 ARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELR  100 (227)
T ss_dssp             HHSTTSCEEEBSSSSCCEEEEEESCCSSCCTTSEEEEEEETTSCCEEECEEEEEETTTEEEEEEECCGGGCCBSSCEEEE
T ss_pred             ccCCcCCeEECCCCCEEEEEecCCCCCCCCCccEEEEEEcCCCCceeccceeccCCCCCceEEEEeCCCcceeeEEEEEE
Confidence            346888888888888999999987654334568999998764443211111110   111223333  466778899999


Q ss_pred             EEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccC-CceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCcccee
Q psy6638         131 LLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVD-PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS  209 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~-~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~  209 (273)
                      |.|.+..+    .....+.....+++.||.++++..  .+ ...+.|+|++|.....+ .++.|+|+|+..+...+..  
T Consensus       101 V~a~~~~~----~~~~~~~~~~~v~p~pP~~l~~~~--~~~~~~l~v~W~~P~~~~~~-~~l~Yev~y~~~~~~~w~~--  171 (227)
T 1eer_B          101 VTAASGAP----RYHRVIHINEVVLLDAPVGLVARL--ADESGHVVLRWLPPPETPMT-SHIRYEVDVSAGQGAGSVQ--  171 (227)
T ss_dssp             EEETTSCE----EEEEEECGGGSEECCCCEEEEEEE--CSSTTCEEEEEECCSSCSCG-GGEEEEEEEECCSSSCCCC--
T ss_pred             EEecCCCc----cEEEEEEeeeeEccCcCcceEEEE--cCCCCeEEEEEcCCCCcccc-cceEEEEEEEcCCCCCcEE--
Confidence            99865322    122334444555667999999876  64 78999999999753222 3789999999765432211  


Q ss_pred             eeeeeEEecCCcccEEEcCCCCccceEEEEEEEecC----CCc-CCCCccEEEEcCCC
Q psy6638         210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS----VGK-GPFSEPFIARTNEG  262 (273)
Q Consensus       210 ~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~----~g~-~~~s~~~~~~t~~~  262 (273)
                         . .. .......+.|.+|+|++.|.|+|+|...    .|. |+||+.+.+.|+.+
T Consensus       172 ---~-~~-~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~~~g~wS~WS~~~~~~t~~d  224 (227)
T 1eer_B          172 ---R-VE-ILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPSD  224 (227)
T ss_dssp             ---E-EE-ECTTCCEEEECCCCSSCEEEEEEEEEECTTTCCEECCCCCCCEEEEC---
T ss_pred             ---E-EE-EecCceEEEEcccCCCCeEEEEEEEeECCCCCCCcCCCCCCCEEEECccc
Confidence               0 11 1223568999999999999999999964    243 89999999999654

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.78  E-value=2.5e-18  Score=114.66  Aligned_cols=119  Identities=32%  Similarity=0.524  Sum_probs=93.5

Q ss_pred             CcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcc
Q psy6638         143 GAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYE  222 (273)
Q Consensus       143 s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (273)
                      +..+.+.+....|+.+|.++++..  .+.+++.|+|++|.....++.+.+|.|+|+..+......  +..... ......
T Consensus         3 S~~~~~~T~~~~P~~~P~~~~~~~--~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~--~~~~~~-~~~~~~   77 (122)
T 1va9_A            3 SGSSGISTEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQ--YSIVEM-KATGDS   77 (122)
T ss_dssp             CCCCSSCSSCCCCSSCCEEEEEEE--CSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCS--CBCCBC-CCCSSE
T ss_pred             CCCEEEECCCCCCCCCCcceEEEe--ccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcc--eEEEEE-ecCCce
Confidence            445667777778877899999988  889999999999986445788999999999876432110  001111 112335


Q ss_pred             cEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         223 GELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       223 ~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      ..++|.+|+|++.|.|+|+|+|..|.|++|..+.++|.+++|+.
T Consensus        78 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~~  121 (122)
T 1va9_A           78 EVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPSS  121 (122)
T ss_dssp             EEEEEESCCSSCCEEEEEEEEETTEECCCCCCEECCCCSSCCCC
T ss_pred             eEEEeCCCCCCCEEEEEEEEEcCCCCCCCccCEEEEeCCCCCCC
Confidence            78999999999999999999999999999999999999999975

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.78  E-value=1.8e-18  Score=113.98  Aligned_cols=114  Identities=20%  Similarity=0.288  Sum_probs=91.7

Q ss_pred             CCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEe
Q psy6638         138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL  217 (273)
Q Consensus       138 g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~  217 (273)
                      |.|.++..+.+.|.+.+|..+|.++.+..   +.+++.|+|++|.....+|.|++|+|+|+..+....       .... 
T Consensus         1 G~G~~S~~v~~~T~e~~P~~~P~~v~~~~---~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~~-------~~~~-   69 (117)
T 1wj3_A            1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNA---TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNV-------QVLN-   69 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSCBCCE---ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSC-------EEEE-
T ss_pred             CcCCCCCCEEEEecCCCCCCCCccEEEEE---eCCEEEEEEcCCCccccCCceeEEEEEEEECCCCCC-------eEEe-
Confidence            45677888889999988888888887644   667899999999655578999999999998764321       1111 


Q ss_pred             cCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       218 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                        .....+.+. |.+++.|.|+|+|+|..|.|++|+.+.++|.+++|+
T Consensus        70 --~~~~~~~~~-L~~~t~Y~~~V~A~n~~G~Gp~S~~v~~~T~~~v~p  114 (117)
T 1wj3_A           70 --TNKTSAELV-LPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP  114 (117)
T ss_dssp             --ESSSEEEEE-CCCSSCEEEEEEEEESSCCCCBCCCEEECCCCCCCS
T ss_pred             --CCCcEEEEE-CCCCCEEEEEEEEECCCccCCCCCCEEEEcCCCCCC
Confidence              113467777 999999999999999999999999999999998775

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}

Probab=99.78  E-value=7e-17  Score=117.54  Aligned_cols=185  Identities=17%  Similarity=0.201  Sum_probs=112.3

Q ss_pred             CCcceEEEEe-eccEEEEEEeCCCCCCccceEEEEEEEeCCCC---CCCc------cceEEecCCccEEEecCCCCCCeE
Q psy6638          58 APKNIRITEE-SSRSLQISWTAPYSGNTAITQYIIQYKSSEEM---WPTQ------PLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        58 ~p~~~~~~~~-~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      .|.++..... ....++|+|++......+...|.+.+......   ....      ..+.........+.+..+.....|
T Consensus         3 ~~~nlsC~~~~~~~~~~C~W~~g~~~~l~t~~~~l~~~~~~~~c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~~~~~~~Y   82 (206)
T 3v6o_A            3 VNINISCETDGYLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGY   82 (206)
T ss_dssp             -CCCCEEEECTTSSCEEEEECCCC--------EEEEEEECSSCCCSSCCCCSSCEEECEEECTTSCEEEEECSCCTTSCE
T ss_pred             CCEEEEEEECCCCcEEEEEecCCCcCCcccccEEEEEEEcCcCccccccccccCcCCCCCCCCCCCceEEeCcHHhcccE
Confidence            4567766665 46789999998654322222688877654310   0000      111111123457788888888999


Q ss_pred             EEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCcc-CCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCcc
Q psy6638         128 QVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVV-DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLA  206 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~-~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~  206 (273)
                      .|+|.|.|..|... +..+.+.....+.+.||.++.+..  . ....+.|+|++|...   ..+..|+|+|+..+...  
T Consensus        83 ~~~V~a~N~~G~~~-s~~~~~~~~~~vkp~pP~~l~v~~--~~~~~~l~l~W~~P~~~---~~~l~yev~y~~~~~~~--  154 (206)
T 3v6o_A           83 TMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEI--TINIGLLKISWEKPVFP---ENNLQFQIRYGLSGKEV--  154 (206)
T ss_dssp             EEEEEEC---CCEE-CCCEEECGGGGBCCCCCCSCEEEE--ETTTTEEEEEC-----------CEEEEEEEEESSSSC--
T ss_pred             EEEEEEEcCCcccc-CCcccEeecceEcCCCCCceEeEE--ecCCCeEEEEECCCCCC---CCcEEEEEEEEECCCCC--
Confidence            99999999988654 555667666666667888888765  4 578999999998652   24579999999875211  


Q ss_pred             ceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCcc
Q psy6638         207 LSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP  254 (273)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~  254 (273)
                          .+............+.+.+|+|++.|.|+|+|.+..|.|.||++
T Consensus       155 ----~w~~~~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSeW  198 (206)
T 3v6o_A          155 ----QWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNW  198 (206)
T ss_dssp             ----CCEEEEECC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCCC
T ss_pred             ----ceEEEecccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCCC
Confidence                12222222222356899999999999999999997777766654

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.77  E-value=1e-18  Score=117.13  Aligned_cols=121  Identities=27%  Similarity=0.347  Sum_probs=93.2

Q ss_pred             CcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCcc-ceeeeeeeEEecCCc
Q psy6638         143 GAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLA-LSSYTLKSVELDNQY  221 (273)
Q Consensus       143 s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~-~~~~~~~~~~~~~~~  221 (273)
                      +..+.+.+.+.+|+.+|.++++..  .+.+++.|+|++|.....+|.|.+|.|+|+..+..... .......... ....
T Consensus         2 S~~v~~~T~~~~P~~~P~~l~~~~--~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~-~~~~   78 (125)
T 1uen_A            2 SSGSSGHSGEDLPMVAPGNVRVNV--VNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILT-FQGS   78 (125)
T ss_dssp             CCCCCCCSCCCCCCCCCSSCEEEE--EETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEE-EESS
T ss_pred             CccEEEECCCCCCCCCCceeEEEe--cCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEE-ecCC
Confidence            345667788888888898998887  88899999999996544578899999999987643211 0000001111 1233


Q ss_pred             ccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         222 EGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       222 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      ...++|.+|+|++.|.|+|+|+|..|.|++|..+.++|.+++|..
T Consensus        79 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~~  123 (125)
T 1uen_A           79 KTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGPS  123 (125)
T ss_dssp             CSEEEEESCCSSCEEEEEEEEEESSCEEEECCCEEEECCCCCSSC
T ss_pred             ccEEEeCCCCCCCEEEEEEEEecCCCCCCCCCCEEEECCCCCCCC
Confidence            578999999999999999999999999999999999999999874

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.77  E-value=3.2e-16  Score=124.53  Aligned_cols=221  Identities=14%  Similarity=0.147  Sum_probs=123.8

Q ss_pred             CCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEee-ccEEEEEEeCCCC---CCccceEEEEEEEeCC-CCCCCc
Q psy6638          29 DSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEES-SRSLQISWTAPYS---GNTAITQYIIQYKSSE-EMWPTQ  103 (273)
Q Consensus        29 ~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~-~~~~~l~W~~~~~---~~~~~~~y~v~~~~~~-~~~~~~  103 (273)
                      ..|.+++.+.+..|.....-   ....|.||.++.+.... ...+.|+|+++..   .++.+..|+++++..+ +.|.. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~---~~v~~~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~~w~~-   83 (380)
T 3lb6_C            8 VGCLYTFLISTTFGCTSSSD---TEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKT-   83 (380)
T ss_dssp             --------------------------CCCCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETTCSSCEE-
T ss_pred             hhhhhhheeecccccccCCc---ccccCCcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCCCCcceE-
Confidence            45667777778777653322   12358899999988765 6899999999865   2245789999999865 45662 


Q ss_pred             cceEEecCCccEEEecCCCCCCeEEEEEEEeCC----CCCCCCCcceEEEe---cCCCCCCCCeeEEecCCccCCceEEE
Q psy6638         104 PLKIIVPGSQTSATLQPLLPATQYQVRLLAENP----LGMSETGAELQAST---LEEAPNGAPREVTSDPGVVDPTELLI  176 (273)
Q Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~----~g~~~~s~~~~~~~---~~~~p~~~p~~~~~~~~~~~~~~i~l  176 (273)
                         .... ....  ..++..+..|.|||+|++.    .|.|.++.+....+   .+..|+.+|.++.+..  .+...+.+
T Consensus        84 ---~~~~-~~~~--~~~~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~--~~~~~l~c  155 (380)
T 3lb6_C           84 ---IITK-NLHY--KDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVY--YNWQYLLC  155 (380)
T ss_dssp             ---EEES-SSEE--EEECCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEE--ETTTEEEE
T ss_pred             ---EEec-cEEE--EEeecCCCceEEEEEeecCCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEE--CCCcEEEE
Confidence               1121 2222  2345558999999999965    56666665554443   4467888999999887  78899999


Q ss_pred             EEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcC--CCCccceEEEEEEEecCCCcCCCCcc
Q psy6638         177 KWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP--GLTPYTKYAIVVRGYNSVGKGPFSEP  254 (273)
Q Consensus       177 ~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~L~p~~~Y~~~v~a~n~~g~~~~s~~  254 (273)
                      +|+++..   .+...+|.|+|+..+......    ........+....+.+.  ++.+.+.|.|+|.|.|..|.+.. ..
T Consensus       156 sW~p~~~---~~~~~~Y~l~y~~~~~~~~~~----C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~s-~~  227 (380)
T 3lb6_C          156 SWKPGIG---VLLDTNYNLFYWYEGLDHALQ----CVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRS-SY  227 (380)
T ss_dssp             EEECC---------CCEEEEEECTTCSSCEE----CSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CCC-EE
T ss_pred             EEcCCCC---CCCCccEEEEEEECCCCcccc----CCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeecc-cc
Confidence            9999875   345679999999765432110    01111111222345555  56788999999999998887643 34


Q ss_pred             EEEEcC----CCCCccccc
Q psy6638         255 FIARTN----EGDFLFLFC  269 (273)
Q Consensus       255 ~~~~t~----~~~P~~~~~  269 (273)
                      +.+.+.    +++|..+..
T Consensus       228 ~~~~~~~~v~p~pP~~l~v  246 (380)
T 3lb6_C          228 FTFQLQNIVKPLPPVYLTF  246 (380)
T ss_dssp             EEECGGGSCCCCCCEEEEE
T ss_pred             EEEcHHHcccCCCCceEEE
Confidence            556543    345544443

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=5.8e-18  Score=112.52  Aligned_cols=112  Identities=18%  Similarity=0.101  Sum_probs=86.9

Q ss_pred             CcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCcccee----eeEEEEEEEcCCCCccceeeeeeeEEec
Q psy6638         143 GAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVL----LGYDVGYQISSGSSLALSSYTLKSVELD  218 (273)
Q Consensus       143 s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i----~~y~v~~~~~~~~~~~~~~~~~~~~~~~  218 (273)
                      +.+..+.+....|+.+|.++++..  .+.++|.|.|.++..  .++.+    .+|.|+|+..+.....     +....  
T Consensus         6 s~~~~~~~~~~~pp~~P~~l~~~~--~s~tsi~lsW~~p~~--~~~~i~~~~~~Y~v~y~~~~~~~~~-----~~~~~--   74 (123)
T 2edd_A            6 SGFPTSVPDLSTPMLPPVGVQAVA--LTHDAVRVSWADNSV--PKNQKTSEVRLYTVRWRTSFSASAK-----YKSED--   74 (123)
T ss_dssp             SCCCCSCSSCCCSSCCCEEEEEEE--EETTEEEEEEECSSS--CSSCCCSCCCCEEEEEEETTCTTCC-----CCCEE--
T ss_pred             CCCCcCCCccCCCCCCCcceEEEE--cCCCeEEEEecCCCC--CcccccCcCceEEEEEEECCCCCcc-----EEEEe--
Confidence            444555555567788999999988  899999999998764  24444    4999999987432111     11111  


Q ss_pred             CCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCC-CCcc
Q psy6638         219 NQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG-DFLF  266 (273)
Q Consensus       219 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~-~P~~  266 (273)
                       .....++|.+|+|++.|.|+|+|+|..|.|++|..+.++|.++ +|+.
T Consensus        75 -~~~~~~~v~gL~P~T~Y~f~V~A~n~~g~g~~S~~v~~~T~~~~~Ps~  122 (123)
T 2edd_A           75 -TTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPSS  122 (123)
T ss_dssp             -ESSSEEEEESCCTTCEEEEEEEECCSSSCCCCCCCEEEECCCSSSCCC
T ss_pred             -CCceEEEecCCCCCCEEEEEEEEeCCCcccCCCCCEEEEccCCCCCCC
Confidence             1257899999999999999999999999999999999999999 9874

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.76  E-value=4.7e-17  Score=118.04  Aligned_cols=183  Identities=11%  Similarity=0.178  Sum_probs=129.1

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEe------CCCCCCCccceEEecCCccEEEecC-CCCCCeEEEE
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS------SEEMWPTQPLKIIVPGSQTSATLQP-LLPATQYQVR  130 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~y~~~  130 (273)
                      +|.++++...+.. ..|.|+++.... ....|.|+|+.      ....|.....+...  ..+.+.|.. +..+..|.+|
T Consensus         9 ~P~nv~~~s~n~~-~iL~W~p~~~~~-~~~~Y~V~y~~~~~~~~~~~~W~~~~~C~~i--~~~~Cdlt~~~~~~~~Y~~R   84 (206)
T 4doh_B            9 APQQLSVLSTNMK-HLLMWSPVIAPG-ETVYYSVEYQGEYESLYTSHIWIPSSWCSLT--EGPECDVTDDITATVPYNLR   84 (206)
T ss_dssp             CCCCCEEEEETTE-EEEECCCCCCSS-SCCEEEEEEEEHHHHHHSTTCCEEEEEEEEE--SSSEEECTTTCCSSSCEEEE
T ss_pred             CCCeeEEEEeCCE-EEEEECCCCCCC-CCEEEEEEEEEeccccCCCccceecccccCC--CCCEEcCCccccCCCCEEEE
Confidence            5889988886554 799999885322 34689999994      45678744333333  567888874 7678899999


Q ss_pred             EEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceee
Q psy6638         131 LLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSY  210 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~  210 (273)
                      |+|.+..+.+.|+....+.........|| .+.+..   ...+|.|.|.++.      .+..|.|.|+..++....    
T Consensus        85 VrA~~~~~~S~w~~~~~f~~~~~t~i~PP-~v~v~~---~~~~i~V~~~~p~------~~l~Y~v~y~~~~~~~~~----  150 (206)
T 4doh_B           85 VRATLGSQTSAWSILKHPFNRQSTILTRP-GMEITK---DGFHLVIELEDLG------PQFEFLVAYWRREPGAEE----  150 (206)
T ss_dssp             EEEEETTEECCCEECSSCBCGGGCBCCCC-CEEEEE---ETTEEEEEECCCC------TTCEEEEEEEESSSSCCC----
T ss_pred             EEEEcCCCccCccccccccchhhcccCCC-eEEEEe---CCCEEEEEecCCC------CcEEEEEEEEEcCCCcee----
Confidence            99999888887766554544333322344 355544   6789999999872      467999999998664311    


Q ss_pred             eeeeEEecCCcccEEEcCCCCccceEEEEEEEecC--CCcCCCCccEEEEcCC
Q psy6638         211 TLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS--VGKGPFSEPFIARTNE  261 (273)
Q Consensus       211 ~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~--~g~~~~s~~~~~~t~~  261 (273)
                         ...........++|.+|+|++.|.|+|+|...  .|.|.+|....+.|..
T Consensus       151 ---~~~~~~~~~~~~~i~~L~p~t~Ycv~Vra~~~~~~~~g~~S~~~C~~t~~  200 (206)
T 4doh_B          151 ---HVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQG  200 (206)
T ss_dssp             ---EEEEECCSSSEEEEEECCSSSCEEEEEEEEEGGGTEECCCCCCEEECC--
T ss_pred             ---EEeEEccCCeEEEEeCCCCCCcEEEEEEEEecCCCCCCCCCCCEeEEccc
Confidence               11111222467999999999999999999975  4789999999998864

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.76  E-value=1.8e-17  Score=110.10  Aligned_cols=111  Identities=25%  Similarity=0.310  Sum_probs=87.9

Q ss_pred             CcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCC-CCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCc
Q psy6638         143 GAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPP-RESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQY  221 (273)
Q Consensus       143 s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~-~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (273)
                      +..+.+.+....| .+|.++.+..  .+.+++.|.|++|. .  .++.+.+|.|+|+..+...       +.........
T Consensus         6 s~~~~~~t~~~~P-~~P~~l~~~~--~~~~sv~l~W~~p~~~--~~g~i~~Y~v~~~~~~~~~-------~~~~~~~~~~   73 (120)
T 1x5f_A            6 SGEHAPATTGPLP-SAPRDVVASL--VSTRFIKLTWRTPASD--PHGDNLTYSVFYTKEGIAR-------ERVENTSHPG   73 (120)
T ss_dssp             CSSCCCCCCCCCC-CCCEEEEEEE--ECSSCEEEEEECCSSC--SSCCSSEEEEEEEETTCCC-------CEEEECSSTT
T ss_pred             CCCEEecCCCCCC-CCCCCcEEEe--cCCCEEEEEECCCCCC--CCCcEEEEEEEEEECCCCC-------ceEEEeccCC
Confidence            4445555655555 6889999988  88999999999997 4  4789999999999875432       1222333445


Q ss_pred             ccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         222 EGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       222 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                      ...++|.+|+|++.|.|+|+|+|..|.|++|..+.++|.+..|+
T Consensus        74 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pP  117 (120)
T 1x5f_A           74 EMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGP  117 (120)
T ss_dssp             CSEEEECSCCTTCEEEEEEEEECSSCEEEECCCEEEECCCCCCS
T ss_pred             ccEEEeCCCCCCCEEEEEEEEECCCccCCCCCCEEEEeCCCCCC
Confidence            68999999999999999999999999999999999999876554

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.75  E-value=2.5e-17  Score=108.32  Aligned_cols=107  Identities=22%  Similarity=0.300  Sum_probs=84.1

Q ss_pred             CCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCC
Q psy6638         152 EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT  231 (273)
Q Consensus       152 ~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~  231 (273)
                      ..+|+.+|.++.+..  .+.+++.|+|++|.....++.|.+|.|+|+..+.....  .  +.... .......++|.+|+
T Consensus         5 ~~~P~~~P~~~~~~~--~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~--~--~~~~~-~~~~~~~~~i~~L~   77 (114)
T 1x4y_A            5 SSGPVAGPYITFTDA--VNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDS--D--YKKDM-VEGDRYWHSISHLQ   77 (114)
T ss_dssp             CCSCCSCCEEEEEEC--SSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGG--G--CCCEE-EETTCCEEEECSCC
T ss_pred             ccCCCCCCeEEEEEe--cCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCc--c--eeeEe-cCCcEeEEEcCCCC
Confidence            346778999999888  89999999999997444588999999999876543100  0  11111 12234689999999


Q ss_pred             ccceEEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         232 PYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       232 p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                      |++.|.|+|+|+|..|.|++|+.+.++|.+..++
T Consensus        78 p~t~Y~~~V~A~n~~G~g~~S~~v~~~T~~~~~p  111 (114)
T 1x4y_A           78 PETSYDIKMQCFNEGGESEFSNVMICETKARSGP  111 (114)
T ss_dssp             TTCEEEEEEEEECTTCCCCCCCCEEEECCCCCCS
T ss_pred             CCCEEEEEEEEEcCCccCCCcCCEEEEeCCCCCC
Confidence            9999999999999999999999999999987664

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=99.75  E-value=2.5e-17  Score=105.73  Aligned_cols=100  Identities=23%  Similarity=0.377  Sum_probs=76.0

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .|..+|.++.+..  .+.+++.|+|++|.....+|.|.+|.|.|+..+.....    .+....... ....+.|.+|+|+
T Consensus         3 ~P~~~P~~~~~~~--~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~----~~~~~~v~~-~~~~~~l~~L~p~   75 (102)
T 3n1f_C            3 TPITGPHIAYTEA--VSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDS----DYKRDVVEG-SKQWHMIGHLQPE   75 (102)
T ss_dssp             -CCSCCEEEEEEE--CSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGG----GCEEEEEET-TCSEEEECSCCTT
T ss_pred             CCCCCCceeEEEE--cCCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCC----ceEEEEEcC-CceEEECCCCCCC
Confidence            5667889999988  89999999999997655689999999999987643100    011122222 3467999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEcC
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIARTN  260 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t~  260 (273)
                      +.|.|+|+|+|..|.|++|..+.++|.
T Consensus        76 t~Y~v~V~A~n~~G~G~~S~~~~~~T~  102 (102)
T 3n1f_C           76 TSYDIKMQCFNEGGESEFSNVMICETK  102 (102)
T ss_dssp             CEEEEEEEEEETTEECCCCCCEEEECC
T ss_pred             CEEEEEEEEECCCcCCCCCCCEEeecC
Confidence            999999999999999999999999884

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.74  E-value=6.2e-17  Score=118.87  Aligned_cols=137  Identities=25%  Similarity=0.364  Sum_probs=110.5

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCC-CCCccceEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPY-SGNTAITQYIIQ   92 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~   92 (273)
                      .+....|.|.++...|.|.|+|.|.|..|.....+.+.+..+|.+|..+.+. .....+.|.|.++. .++.++..|.|+
T Consensus        72 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~-~~~~~~~l~w~~p~~~~~~pi~~y~v~  150 (215)
T 3mtr_A           72 TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAE  150 (215)
T ss_dssp             ETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEEEEEE-EETTEEEEEEECCSCCCSSCEEEEEEE
T ss_pred             CCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcceEEE-EecceEEEEEecCCccCCCceEEEEEE
Confidence            3456799999999999999999999999999889999999999999887764 56788999999765 456688899999


Q ss_pred             EEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEec
Q psy6638          93 YKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL  151 (273)
Q Consensus        93 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~  151 (273)
                      |+..+. .|...............+.|.+|.+++.|.|+|.|.|..|.+.++..+.+.+.
T Consensus       151 ~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~  210 (215)
T 3mtr_A          151 WRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ  210 (215)
T ss_dssp             EEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECC
T ss_pred             EEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEec
Confidence            998764 45421100001112268899999999999999999999999999988888774

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=4.7e-17  Score=107.08  Aligned_cols=108  Identities=22%  Similarity=0.317  Sum_probs=84.5

Q ss_pred             ecCCCCCCCCeeEEecCCcc--CCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEc
Q psy6638         150 TLEEAPNGAPREVTSDPGVV--DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRI  227 (273)
Q Consensus       150 ~~~~~p~~~p~~~~~~~~~~--~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  227 (273)
                      +.+.+|+.+|.++++..  .  +.+++.|+|++|..  .+|.|.+|.|+|+..+.....  .  +.... .......++|
T Consensus         3 T~~~~P~~~P~~l~~~~--~~~~~~sv~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~--~--~~~~~-~~~~~~~~~i   73 (114)
T 2ede_A            3 SGSSGPTSAPKDLTVIT--REGKPRAVIVSWQPPLE--ANGKITAYILFYTLDKNIPID--D--WIMET-ISGDRLTHQI   73 (114)
T ss_dssp             CCCCCCCSCCEEEEEEE--CSSCSSCEEEEEECCSS--CSSCCSEEEEEEESCSSSCTT--T--SEEEE-EETTCCEEEE
T ss_pred             CCCCCCCCCCcceEEEE--ccCCCCEEEEEECCCCC--CCCceeEEEEEEEeCCCCCcc--c--eEEEE-ECCCceEEEE
Confidence            44567888999998877  5  77899999999965  478899999999875432110  0  11111 2234578999


Q ss_pred             CCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         228 PGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       228 ~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      .+|+|++.|.|+|+|+|..|.|++|..+.++|.+..|+.
T Consensus        74 ~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pp~  112 (114)
T 2ede_A           74 MDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSGPS  112 (114)
T ss_dssp             CSCCSSCEEEEEEEEECSSCBCCCCCCEEEECCCSSCCC
T ss_pred             cCCCCCCEEEEEEEEEeCCcCcCCcccEEEEecCCCCCC
Confidence            999999999999999999999999999999999887753

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens}

Probab=99.74  E-value=6.3e-18  Score=122.97  Aligned_cols=184  Identities=19%  Similarity=0.162  Sum_probs=107.7

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEec--CCCCCCeEEEEEEEe
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQ--PLLPATQYQVRLLAE  134 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~y~~~v~a~  134 (273)
                      +|.++++.+.+... .|.|+++....+....|.|+|+..+ ..|.....+...  ..+.+.|.  .+.+...|.+||+|.
T Consensus        10 ~P~nv~~~s~n~~~-iL~W~p~~~~~~~~~~Y~Vqy~~~~~~~W~~~~~C~~i--~~~~Cdlt~~~~~~~~~Y~~RV~A~   86 (211)
T 3g9v_A           10 KPQRVQFQSRNFHN-ILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGT--QELSCDLTSETSDIQEPYYGRVRAA   86 (211)
T ss_dssp             CCEEEEEEEETTEE-EEEEECCCC---CCCEEEEEEEETTCSSCEEEEEEEEE--CCSEEECTGGGCSTTSCEEEEEEEE
T ss_pred             CCceeEEEEEcCce-EEEECCCCCCCCCCeEEEEEEEECCCCceEECccCCCC--CCCEECCCCcccccCccEEEEEEEE
Confidence            48899887765555 5999988654444678999999875 467643333333  44677775  357888999999999


Q ss_pred             CCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCC--ccce--------eeeEEEEEEEcCCCC
Q psy6638         135 NPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRES--WNGV--------LLGYDVGYQISSGSS  204 (273)
Q Consensus       135 ~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~--~~~~--------i~~y~v~~~~~~~~~  204 (273)
                      +..+.+.|+....|........+|| .+.+..  . .++|.|.|.+|....  .+|.        ...|.|.|+..+...
T Consensus        87 ~~~~~S~ws~~~~f~~~~~t~i~PP-~v~v~~--~-~~si~V~~~~P~~~~~~~ng~~~~~~~~~~l~Y~v~y~~~~~~~  162 (211)
T 3g9v_A           87 SAGSYSEWSMTPRFTPWWETKIDPP-VMNITQ--V-NGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEK  162 (211)
T ss_dssp             ETTEECCCEECCCBCHHHHCBCCCC-EEECC--------CCCEEECCCCGGGGCSSCSSCHHHHTTCEEEEEEC------
T ss_pred             CCCCcCCCEecCcccccccCccCCC-EEEEEE--c-CCEEEEEEECCCCccccCCCceeeehhcceeEEEEEEEECCCcc
Confidence            9888888876666655434444566 488776  3 459999999997621  1332        367999998775432


Q ss_pred             ccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecC--CCcCCCCccEEE
Q psy6638         205 LALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS--VGKGPFSEPFIA  257 (273)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~--~g~~~~s~~~~~  257 (273)
                            ....   .......++|.+|.|++.|.|+|+|...  ...|++|+...+
T Consensus       163 ------~~~~---~~~~~~~~~i~~L~p~t~Ycv~V~a~~~~~~~~s~~S~~~C~  208 (211)
T 3g9v_A          163 ------EQKV---YEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCV  208 (211)
T ss_dssp             ------CEEE---EEESSCCCC----------CEEEEEEETTTTEECCCCCC---
T ss_pred             ------EEEE---EecCCcEEEEecCCCCCeEEEEEEEEeCCCCCcCCCCCCEeE
Confidence                  0111   1122467899999999999999999963  234666665443

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.74  E-value=1.6e-16  Score=128.31  Aligned_cols=219  Identities=12%  Similarity=0.153  Sum_probs=133.3

Q ss_pred             EEEe--eeeeCCCEEEEEEEEcCCCC---ce-----eEEEEEE-ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceE
Q psy6638          20 LGIA--NVLRQDSGTLSCLATNYHGT---AE-----MTIQLLV-QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQ   88 (273)
Q Consensus        20 l~i~--~~~~~~~~~y~~~a~n~~g~---~~-----~~~~~~~-~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~   88 (273)
                      +.+.  +|.++..|.++++|.+..|.   +.     ..+.+.. ...|.+|.++.+.......+.|.|+++....+ ...
T Consensus       171 ~~~~~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~~~~p~~l~c~~~~~~~l~c~W~~~~~~~~-~~~  249 (419)
T 2gys_A          171 ATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVAS-SVS  249 (419)
T ss_dssp             EEECTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCCCTTSCEEEEEEECSSSEEEEEEEEEHHHHT-TCC
T ss_pred             EEechhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeeccccccCCCceEEEEECCceEEEeEEECCCCCCC-cee
Confidence            4444  89999999999999986432   21     1222222 34467888888888788899999997532112 246


Q ss_pred             EEEEEEeCCC------CCCCccceEEec-C------CccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCC
Q psy6638          89 YIIQYKSSEE------MWPTQPLKIIVP-G------SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP  155 (273)
Q Consensus        89 y~v~~~~~~~------~~~~~~~~~~~~-~------~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p  155 (273)
                      |.|.|+....      .|.......... .      ..+.+.+.+|.+...|.++|.|.+..+        .+.......
T Consensus       250 y~l~y~~~~~~g~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~~~l~~~~~y~i~V~a~~~~~--------~~~~~~~v~  321 (419)
T 2gys_A          250 FGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEK--------HIKSSVNIQ  321 (419)
T ss_dssp             EEEEEECC-----CCCCCCEECCCEEEECCTTTEEEEEEEEECSCTTTCCEEEEEEEECCCCE--------EEEGGGSBC
T ss_pred             EEEEEEecCccccccCcccccCCCcccccCCCcceeEEeEEECccCCccCEEEEEEEEccCCc--------cccceEEEE
Confidence            9998876531      222111111111 1      123566778889999999999875433        111122223


Q ss_pred             CCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      +.|| .+.+..   ..+.+.|.|++|.... ...+++|+|+|+..+..+....   ....  .  ..+.+.|.+|.|++.
T Consensus       322 p~PP-~l~v~~---~~~~l~l~W~~P~~~~-~~~~l~Yev~y~~~~~~w~~~~---~~~~--~--~~~~~~l~~L~p~t~  389 (419)
T 2gys_A          322 MAPP-SLQVTK---DGDSYSLRWETMKMRY-EHIDHTFEIQYRKDTATWKDSK---TETL--Q--NAHSMALPALEPSTR  389 (419)
T ss_dssp             CCCC-EEEEC------CCCEEEEEC---------CEEEEEEEECSSSCSTTSC---EEEE--E--SCSEEECCCCCSSCC
T ss_pred             ECCC-CeEEEE---eCCeEEEEECCCcccc-cccceEEEEEEEcCCCCcceee---cccc--c--cccEEEeccCCCCCe
Confidence            3456 466555   3689999999996421 2257799999998764321110   1111  1  247899999999999


Q ss_pred             EEEEEEEecCCC-----cCCCCccEEEEc
Q psy6638         236 YAIVVRGYNSVG-----KGPFSEPFIART  259 (273)
Q Consensus       236 Y~~~v~a~n~~g-----~~~~s~~~~~~t  259 (273)
                      |.|+|+|.+..|     .|+||+++.+.|
T Consensus       390 Y~~qVRa~~~~g~~~G~wS~WS~~~~~~t  418 (419)
T 2gys_A          390 YWARVRVRTSRTGYNGIWSEWSEARSWDT  418 (419)
T ss_dssp             CEEEEEEEECCTTCCBCCCCCCCCEECCC
T ss_pred             EEEEEEEEEcCCCCCCccCCCCCCeEeeC
Confidence            999999998753     357777777765

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.74  E-value=1.9e-17  Score=109.15  Aligned_cols=113  Identities=20%  Similarity=0.376  Sum_probs=92.0

Q ss_pred             CCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEe
Q psy6638         138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL  217 (273)
Q Consensus       138 g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~  217 (273)
                      |.|..+..+.+.+....|. +|.++++..  .+.+++.|+|+++..    +.+.+|.|+|+..+....       .....
T Consensus         1 G~g~~S~~~~~~t~~~~P~-~P~~l~~~~--~~~~sv~l~W~~p~~----~~i~~Y~v~~~~~~~~~~-------~~~~~   66 (115)
T 1x5z_A            1 GSSGSSGDIQVITQTGVPG-QPLNFKAEP--ESETSILLSWTPPRS----DTIANYELVYKDGEHGEE-------QRITI   66 (115)
T ss_dssp             CCCCCCCCCCCCCCSCCCC-CCEEEEEEC--SSSSEEEEEEECCSC----CCCCEEEECBEESSSCCC-------BCCEE
T ss_pred             CCCCCCCCEEEECCCCCCC-CCccCEeee--CCCCEEEEEEcCCCC----CCccEEEEEEEeCCCCCc-------eEEec
Confidence            4566777788888777664 888999988  889999999999964    378899999998764321       11111


Q ss_pred             cCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       218 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                        .....++|.+|++++.|.|+|+|+|..|.|++|+.+.++|.+.+|+.
T Consensus        67 --~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~~  113 (115)
T 1x5z_A           67 --EPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGPS  113 (115)
T ss_dssp             --CSSSEEEEECCCTTCEEEECEEEECSSCEEEECCCEEEECCCCCCCC
T ss_pred             --CCCcEEEECCCCCCCeEEEEEEEECCCcccCCCcCEEEecCCCCCCC
Confidence              12478999999999999999999999999999999999999998874

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.74  E-value=2e-17  Score=109.51  Aligned_cols=116  Identities=18%  Similarity=0.249  Sum_probs=91.6

Q ss_pred             CCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEe
Q psy6638         138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL  217 (273)
Q Consensus       138 g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~  217 (273)
                      |.+.++..+.+.+....| .+|.++.+..  .+.+++.|.|.++.+  .++.|.+|.|+|+......      .+.....
T Consensus         1 G~s~~S~~~~~~t~~~~P-~~P~~~~~~~--~~~~sv~l~W~~p~~--~~~~i~~Y~v~~~~~~~~~------~~~~~~~   69 (118)
T 1x3d_A            1 GSSGSSGAEIFTTLSCEP-DIPNPPRIAN--RTKNSLTLQWKAPSD--NGSKIQNFVLEWDEGKGNG------EFCQCYM   69 (118)
T ss_dssp             CCCCCCCCCCCCCCCSCC-CCCCCCEEEE--EETTEEEEECCCCCC--CSSCEEEEEEEECTTTSSS------CCEEEEE
T ss_pred             CCCCCCcCEEEEcCCCCC-cCCCCcEEec--cCCCEEEEEECCCCC--CCCcceEEEEEEecCCCCC------CeEEeec
Confidence            456777778888776666 4777888877  789999999999975  3678999999998765421      1222211


Q ss_pred             cCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       218 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      .  ....+++.+|++++.|.|+|+|.|..|.|++|+.+.+.|.+.+|..
T Consensus        70 ~--~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~~P~~  116 (118)
T 1x3d_A           70 G--SQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSGPS  116 (118)
T ss_dssp             E--SCSEEEEESCCTTCEEEEECCEEESSCBCCCCCCEEEECSCCCCCC
T ss_pred             c--CCcEEEeCCCCCCCEEEEEEEEEECCCCCCCccCEEEEcCCCCCcc
Confidence            1  2378999999999999999999999999999999999999988864

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=6.9e-17  Score=107.14  Aligned_cols=105  Identities=21%  Similarity=0.323  Sum_probs=83.8

Q ss_pred             EecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcC
Q psy6638         149 STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP  228 (273)
Q Consensus       149 ~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  228 (273)
                      .+....| .+|.++.+..  .+.+++.|+|++|..  .++.+.+|.|+|+..+...+       ............++|.
T Consensus        12 ~~~~~~P-~~P~~l~~~~--~~~~sv~l~W~~p~~--~~~~i~~Y~v~~~~~~~~~~-------~~~~~~~~~~~~~~i~   79 (119)
T 2ed7_A           12 PSSSVLP-SAPRDVVPVL--VSSRFVRLSWRPPAE--AKGNIQTFTVFFSREGDNRE-------RALNTTQPGSLQLTVG   79 (119)
T ss_dssp             CCSSSSC-CCCSCCEEEE--ECSSCEEEECCCCSC--CSSCEEEEEEEEEESSCCCC-------EEEECCCTTCCEEEEC
T ss_pred             CCCCCCC-cCCcceEEEe--cCCCEEEEEEeCCCC--CCCcEEEEEEEEEeCCCCcc-------eeeEeecCCceEEEeC
Confidence            3444444 6888898887  889999999999976  47889999999998765421       1222333446899999


Q ss_pred             CCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         229 GLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       229 ~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                      +|+|++.|.|+|+|+|..|.|++|+.+.+.|.++.|+
T Consensus        80 ~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pP  116 (119)
T 2ed7_A           80 NLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGP  116 (119)
T ss_dssp             SCCSSSEEEECCEEEESSCBCSCCCCEEEECCCCSCC
T ss_pred             CCCCCCEEEEEEEEEcCCccCCCcCCEEEEeCCCCCC
Confidence            9999999999999999999999999999999876554

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=3e-17  Score=108.68  Aligned_cols=111  Identities=22%  Similarity=0.382  Sum_probs=87.0

Q ss_pred             CCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCc
Q psy6638         142 TGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQY  221 (273)
Q Consensus       142 ~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (273)
                      .+....+.+....| .+|.++.+..  .+.+++.|.|++|..   +|.|.+|.|+|+..+...       +.........
T Consensus         5 ~~~~~~~~t~~~~P-~~P~~l~~~~--~~~~sv~l~W~~p~~---~g~i~~Y~v~~~~~~~~~-------~~~~~~~~~~   71 (118)
T 2yrz_A            5 SSGSHDSRLTAGVP-DTPTRLVFSA--LGPTSLRVSWQEPRC---ERPLQGYSVEYQLLNGGE-------LHRLNIPNPA   71 (118)
T ss_dssp             CCSCCTTSSSCSCC-CCCCCCEECC--CBTTEEEEECCCCCC---SSCEEEEEEEEEBSSSCC-------EEEEEESCTT
T ss_pred             CCCcceeecCCCCC-CCCCceEEEe--CCCCEEEEEeCCCCC---CCCccEEEEEEEECCCCc-------eEEEEcCCCC
Confidence            34445566766666 4777888888  899999999999987   468999999999865432       2333334445


Q ss_pred             ccEEEcCCCCccceEEEEEEEecCCCcCCCCc-cEEEEcCCCCCc
Q psy6638         222 EGELRIPGLTPYTKYAIVVRGYNSVGKGPFSE-PFIARTNEGDFL  265 (273)
Q Consensus       222 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~-~~~~~t~~~~P~  265 (273)
                      ...++|.+|+|++.|.|+|+|+|..|.|++|+ .+.+.|.+.+|+
T Consensus        72 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~t~~~~ps  116 (118)
T 2yrz_A           72 QTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGPS  116 (118)
T ss_dssp             CCEEEEESCCTTCEEEEEEEEEESSCEEEEEEEEEECCCSCCCCC
T ss_pred             cCEEEeCCCCCCCEEEEEEEEEcCCcCCCCcCCceEeCCCCCCCC
Confidence            68999999999999999999999999999987 566777777665

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.72  E-value=3.3e-17  Score=107.17  Aligned_cols=102  Identities=17%  Similarity=0.115  Sum_probs=81.0

Q ss_pred             CCCCCCCeeEEecCCccCCceEEEEEeCCCCCCcccee----eeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcC
Q psy6638         153 EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVL----LGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP  228 (273)
Q Consensus       153 ~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i----~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  228 (273)
                      ..|+.+|.++++..  .+.++|.|+|.+|...  ++.+    .+|.|+|+.......        ...........++|.
T Consensus         6 ~~pp~~P~~l~~~~--~s~tsi~lsW~~p~~~--~~~~~~~~~~Y~v~y~~~~~~~~--------~~~~~~~~~~~~~i~   73 (113)
T 1x5j_A            6 SGPMMPPVGVQASI--LSHDTIRITWADNSLP--KHQKITDSRYYTVRWKTNIPANT--------KYKNANATTLSYLVT   73 (113)
T ss_dssp             CCCCCCCEEEEEEE--EETTEEEEEEECTTSC--SSSCCCSSCEEEEEECBSSSSSC--------CCEECCBCSSEEEEE
T ss_pred             CCCCCCCcceEEEE--ecCCEEEEEecCCCCc--cccccCcCceEEEEEEECCCCCe--------EEEEEecCcCEEEeC
Confidence            45778999999988  8999999999998753  3333    499999987422111        111122345789999


Q ss_pred             CCCccceEEEEEEEecCCCcCCCCccEEEEcCCC-CCcc
Q psy6638         229 GLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG-DFLF  266 (273)
Q Consensus       229 ~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~-~P~~  266 (273)
                      +|+|++.|.|+|+|+|..|.|++|..+.++|.+. +|+.
T Consensus        74 gL~P~T~Y~f~V~A~~~~G~g~~S~~v~~~T~~~~~Ps~  112 (113)
T 1x5j_A           74 GLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS  112 (113)
T ss_dssp             SCCTTCEECCEEEEECSSCBCCCCCCCCEECCCSSCCCC
T ss_pred             CCCCCcEEEEEEEEecCCccCCCcccEEeeccCCCCCCC
Confidence            9999999999999999999999999999999999 9874

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.72  E-value=3.4e-17  Score=108.72  Aligned_cols=116  Identities=18%  Similarity=0.239  Sum_probs=88.2

Q ss_pred             CCCCCCcceEEEecCCCCCCCCeeEEec-CCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEE
Q psy6638         138 GMSETGAELQASTLEEAPNGAPREVTSD-PGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE  216 (273)
Q Consensus       138 g~~~~s~~~~~~~~~~~p~~~p~~~~~~-~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~  216 (273)
                      |.|.++..+.+.+....| .+|..+.+. .  .+.+++.|.|++|.... +..|.+|.|+|+......      .+..+.
T Consensus         1 G~s~~S~~~~~~t~~~~P-~~P~~~~~~~~--~~~~sv~l~W~~p~~~g-g~~i~~Y~v~~~~~~~~~------~~~~~~   70 (120)
T 2crm_A            1 GSSGSSGVVEFTTCPDKP-GIPVKPSVKGK--IHSHSFKITWDPPKDNG-GATINKYVVEMAEGSNGN------KWEMIY   70 (120)
T ss_dssp             CCCTTCSCCSCCSCCCCC-CCCCCCEEEEE--EETTEEEEECCCCTTCC-SSCCCEEEEEEEESSSSC------CCEEEE
T ss_pred             CCCCCcCCEEEEeCCCCC-CCCCCCEEeec--cCCCEEEEEECCCCcCC-CCeeeEEEEEEccCCCCc------CCEEEE
Confidence            457778878777776666 455565554 4  67889999999997632 347899999999875421      122222


Q ss_pred             ecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       217 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                      .  .....+++.+|.+++.|.|+|+|+|..|.|++|+.+.++|.+.+|.
T Consensus        71 ~--~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~~p~  117 (120)
T 2crm_A           71 S--GATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGP  117 (120)
T ss_dssp             C--SSCSEEEECSCCTTSCEEEEEEEEETTEECCCCCCCCCCCCCCSCC
T ss_pred             e--ccccEEEECCCCCCCEEEEEEEEEcCCccCCCcccEEEEcCCCCCC
Confidence            1  2357899999999999999999999999999999999999877665

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.72  E-value=2.5e-17  Score=108.75  Aligned_cols=112  Identities=22%  Similarity=0.339  Sum_probs=88.3

Q ss_pred             CCCcceEEEecC-CCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecC
Q psy6638         141 ETGAELQASTLE-EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDN  219 (273)
Q Consensus       141 ~~s~~~~~~~~~-~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~  219 (273)
                      .++..+.+++.. ..++.+|.++++..  .+.+++.|+|++|..  .++.+.+|.|+|+..+...+       .....  
T Consensus         2 ~~S~~~~~~T~~~~~~P~~P~~l~~~~--~~~~si~l~W~~p~~--~~~~i~~Y~v~~~~~~~~~~-------~~~~~--   68 (116)
T 1x5g_A            2 SSGSSGRVETQPEVQLPGPAPNLRAYA--ASPTSITVTWETPVS--GNGEIQNYKLYYMEKGTDKE-------QDVDV--   68 (116)
T ss_dssp             CCCCCCCCSSCCCSSCCCCCSSCEEEE--EETTEEEEECCCCSC--CSSCCSEEEEEEEETTCCCC-------CCEEE--
T ss_pred             CCccCeEEEcCCCCCCCcCCCccEEEe--cCCCEEEEEEeCCCC--CCCcccEEEEEEEECCCCcc-------EEEec--
Confidence            445666677742 23445788888887  789999999999975  47889999999998765431       11111  


Q ss_pred             CcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         220 QYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       220 ~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                       ....++|.+|+|++.|.|+|+|+|..|.|++|..+.++|.+++|+.
T Consensus        69 -~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~p  114 (116)
T 1x5g_A           69 -SSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSGPS  114 (116)
T ss_dssp             -CSSEEEECSCCTTCEEEEEEEEECSSCCCCBCCCCCEECCCSSCCC
T ss_pred             -CCceEEEcCCCCCCEEEEEEEEEcCCCcCCCCCCEEEECCCCCCCC
Confidence             2478999999999999999999999999999999999999887763

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.71  E-value=4.2e-17  Score=105.66  Aligned_cols=100  Identities=21%  Similarity=0.196  Sum_probs=79.9

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .+|.+|.++.+..  .+.+++.|.|++|..  .++.|.+|.|+|+..+...        .....  .....++|.+|+|+
T Consensus         6 ~~P~~P~~~~~~~--~s~~sv~l~W~~p~~--~g~~i~~Y~v~~~~~~~~~--------~~~~~--~~~~~~~v~~L~p~   71 (106)
T 1x4x_A            6 SGPDQCKPPQVTC--RSATCAQVNWEVPLS--NGTDVTEYRLEWGGVEGSM--------QICYC--GPGLSYEIKGLSPA   71 (106)
T ss_dssp             CSCCCCCCCCCEE--EETTEEEEECCCCSC--SSSCCCEEEEEEESSTTSC--------CEEEE--ESCSEEEEESCCSS
T ss_pred             CCcCCCCCCEEEE--cCCCEEEEEEcCCCC--CCCcceEEEEEEEcCCCce--------EEEEe--CCcceEEEcCCCCC
Confidence            4556777888777  789999999999876  2348999999998765321        11111  12468999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEcCCCCCccc
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFL  267 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~~  267 (273)
                      +.|.|+|+|.|..|.|++|+.+.++|.+.+|+..
T Consensus        72 t~Y~frV~A~n~~G~g~~S~~v~~~T~~~~P~~~  105 (106)
T 1x4x_A           72 TTYYCRVQALSVVGAGPFSEVVACVTPPSSGPSS  105 (106)
T ss_dssp             CEEEEEEEEECSSCCCCBCCCEEEECCCCCSCCC
T ss_pred             CEEEEEEEEEcCCcCCCCcCCEEEECCCCCcCCC
Confidence            9999999999999999999999999999998753

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=3.3e-16  Score=101.51  Aligned_cols=98  Identities=23%  Similarity=0.390  Sum_probs=81.3

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .| .+|.++++..  .+.+++.|+|++|..  .++.+.+|.|+|+..+...       +.....   ....++|.+|+|+
T Consensus         7 ~P-~~P~~l~~~~--~~~~si~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~-------~~~~~~---~~~~~~i~~L~p~   71 (106)
T 2ed8_A            7 GP-GPVENLQAVS--TSPTSILITWEPPAY--ANGPVQGYRLFCTEVSTGK-------EQNIEV---DGLSYKLEGLKKF   71 (106)
T ss_dssp             CC-CCCEEEEEEC--SSTTEEEEEEECCSS--CSSCCCEEEEEEEETTTCC-------EEEEEE---CSSCEEEESCCTT
T ss_pred             CC-cCCceeEEEe--cCCCEEEEEECCCCC--CCCCeeEEEEEEEECCCCc-------eEEEeC---CccEEEECCCCCC
Confidence            45 4888999988  889999999999975  4788999999999876532       112222   2478999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      +.|.|+|+|+|..|.|++|..+.++|.+++|+.
T Consensus        72 t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~~  104 (106)
T 2ed8_A           72 TEYSLRFLAYNRYGPGVSTDDITVVTLSDSGPS  104 (106)
T ss_dssp             CEEEEEEEEECSSCEEEECCCEEEECCCCCCCC
T ss_pred             CEEEEEEEEEeCCccCCCcCCEEEEcCCCCCCC
Confidence            999999999999999999999999999988763

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.70  E-value=1.1e-16  Score=104.81  Aligned_cols=104  Identities=23%  Similarity=0.402  Sum_probs=81.7

Q ss_pred             EEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEc
Q psy6638         148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRI  227 (273)
Q Consensus       148 ~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  227 (273)
                      +.+....| .+|.++.+..  .+.+++.|.|++|..  .++.|.+|.|+|+..+.....     +...   ......++|
T Consensus         4 ~~T~~~~P-~~P~~l~~~~--~~~~sv~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~-----~~~~---~~~~~~~~i   70 (111)
T 1x5l_A            4 GSSGQAAP-SQVVVIRQER--AGQTSVSLLWQEPEQ--PNGIILEYEIKYYEKDKEMQS-----YSTL---KAVTTRATV   70 (111)
T ss_dssp             CCCSCCCC-CCCCCEECSC--BCSSCEEEEECCCSC--CCSCCCEEEEEEEESSSCCSS-----CEEE---EESSSEEEE
T ss_pred             EEcCCCCC-CCCceEEEEE--cCCCEEEEEECCCCC--CCCEEEEEEEEEEECCCCcee-----EEEe---cCCCCEEEE
Confidence            45555555 4677898888  899999999999965  478899999999987532211     1111   223578999


Q ss_pred             CCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCC
Q psy6638         228 PGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDF  264 (273)
Q Consensus       228 ~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P  264 (273)
                      .+|.|++.|.|+|+|+|..|.|++|+.+.++|.+...
T Consensus        71 ~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~~  107 (111)
T 1x5l_A           71 SGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKPSG  107 (111)
T ss_dssp             CSCCTTCEEEECEEEEETTEECCCCCCEEEECCCTTS
T ss_pred             cCCCCCCEEEEEEEEEeCCcCCCCcccEEEEcCCCCC
Confidence            9999999999999999999999999999999987643

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=103.67  Aligned_cols=102  Identities=22%  Similarity=0.427  Sum_probs=79.0

Q ss_pred             ecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCC
Q psy6638         150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG  229 (273)
Q Consensus       150 ~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  229 (273)
                      |...+| .+|.++++..  .+.+++.|+|++|..  .+|.|.+|.|+|+..+.....    .+....   .....++|.+
T Consensus         3 T~~~~P-~~p~~l~~~~--~~~~sv~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~----~~~~~~---~~~~~~~i~~   70 (109)
T 2e7h_A            3 SGSSGP-PAVSDIRVTR--SSPSSLSLAWAVPRA--PSGAVLDYEVKYHEKGAEGPS----SVRFLK---TSENRAELRG   70 (109)
T ss_dssp             SSCCSS-CCCCCCEEEE--EETTEEEEECCCCCC--SSSCCCEEEEEEEETTCCSTT----TSEEEE---ESSSEEEEES
T ss_pred             CCCCCC-CCCCccEEEe--cCCCEEEEEeCCCCC--CCCcEeEEEEEEEECCCCCCc----eeEEEc---cCCCEEEECC
Confidence            334455 4677888887  899999999999975  578899999999987622111    011111   1246899999


Q ss_pred             CCccceEEEEEEEecCCCcCCCCccEEEEcCCCC
Q psy6638         230 LTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGD  263 (273)
Q Consensus       230 L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~  263 (273)
                      |+|++.|.|+|+|+|..|.|++|+.+.++|.+..
T Consensus        71 L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~  104 (109)
T 2e7h_A           71 LKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDS  104 (109)
T ss_dssp             CCTTSCEEEEEEEECSSCBCCCCSCEECCCCCCS
T ss_pred             CCCCCeEEEEEEEEeCCccCCCCCCEEEEcCCCC
Confidence            9999999999999999999999999999998743

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.70  E-value=1.4e-16  Score=106.22  Aligned_cols=112  Identities=19%  Similarity=0.321  Sum_probs=84.2

Q ss_pred             CcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEc---CCCCccceeeeeeeEEe--
Q psy6638         143 GAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQIS---SGSSLALSSYTLKSVEL--  217 (273)
Q Consensus       143 s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~---~~~~~~~~~~~~~~~~~--  217 (273)
                      +..+...+....| .+|.++.+..  .+.+++.|.|.++.+  .++.|.+|.|+|+..   ....       |..+..  
T Consensus         6 s~~~~~~~~~~~P-~~P~~l~~~~--~~~~sv~l~W~p~~~--~~~~i~~Y~v~~~~~~~~~~~~-------w~~~~~~~   73 (124)
T 1wis_A            6 SGTISSGVPPELP-GPPTNLGISN--IGPRSVTLQFRPGYD--GKTSISRWLVEAQVGVVGEGEE-------WLLIHQLS   73 (124)
T ss_dssp             SCCCCSCCCCCCC-CCCEEEEEES--CCSSCEEEEEECCCC--CSSCCSEEEEEECBSCCSTTSC-------CEEEEEEE
T ss_pred             cccccccCCCCCC-ccCCCCEEEE--ecCCEEEEEEECCCC--CCCcccEEEEEEEECCCCCCCC-------CeEeeeEc
Confidence            3334444444444 6889999988  899999999988875  367899999999873   2221       222211  


Q ss_pred             cCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCcc-EEEEcCCCCCcc
Q psy6638         218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP-FIARTNEGDFLF  266 (273)
Q Consensus       218 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~-~~~~t~~~~P~~  266 (273)
                      .......+++.+|+|++.|.|+|+|.|..|.|++|.. ..++|.+.+|+.
T Consensus        74 ~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~~T~~~~P~~  123 (124)
T 1wis_A           74 NEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGPSS  123 (124)
T ss_dssp             SCTTCSEEEECSCCTTSEECCCCEEECSSCBCCCCCCCCCEECCCSSCCC
T ss_pred             cCCCceEEEeCCCCCCCEEEEEEEEEECCccCCCcCCccceEcCCCCCCC
Confidence            2344678999999999999999999999999999986 468999888864

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.70  E-value=2.1e-16  Score=102.79  Aligned_cols=101  Identities=21%  Similarity=0.327  Sum_probs=80.1

Q ss_pred             cCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCC
Q psy6638         151 LEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL  230 (273)
Q Consensus       151 ~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  230 (273)
                      ...+| .+|.++++..  .+.+++.|.|++|..  .++.|.+|.|+|+..+......     ...   ......++|.+|
T Consensus         4 ~~~~P-~~P~~l~~~~--~~~~sv~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~~-----~~~---~~~~~~~~l~~L   70 (108)
T 2djs_A            4 GSSGP-STVPIMHQVS--ATMRSITLSWPQPEQ--PNGIILDYEIRYYEKEHNEFNS-----SMA---RSQTNTARIDGL   70 (108)
T ss_dssp             CCCCC-CCCSCCEEEE--ECSSEEEEECCCCSC--CSSCEEEEEEEEEETTSCSTTC-----EEE---EESSSEEEEESC
T ss_pred             CCCCC-CCCcceEEEe--cCCCEEEEEECCCCC--CCCeEEEEEEEEEECCCCCcce-----eEE---ecCccEEEEcCC
Confidence            34455 4677888877  789999999999965  5788999999999876532211     111   123578999999


Q ss_pred             CccceEEEEEEEecCCCcCCCCccEEEEcCCCCC
Q psy6638         231 TPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDF  264 (273)
Q Consensus       231 ~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P  264 (273)
                      .|++.|.|+|+|+|..|.|++|..+.++|.++..
T Consensus        71 ~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~~  104 (108)
T 2djs_A           71 RPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSG  104 (108)
T ss_dssp             CTTCEEEEEEEEEESSCEEEECCCEEEECCCSSC
T ss_pred             CCCCEEEEEEEEEeCCEECCCCCCEEEEeCCCCc
Confidence            9999999999999999999999999999987653

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.69  E-value=3.8e-16  Score=102.68  Aligned_cols=92  Identities=25%  Similarity=0.293  Sum_probs=73.6

Q ss_pred             cCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCc
Q psy6638         169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK  248 (273)
Q Consensus       169 ~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~  248 (273)
                      .++++|.|+|+++.   .++.|.+|.|.|+..+..... .  .+............++|.+|+|++.|.|+|+|+|..|.
T Consensus        27 ~sstsi~vsW~~~~---~~g~i~gY~V~Y~~~~~~~~~-~--~~~~~~v~~~~~~~~~l~~L~p~T~Y~~~V~A~n~~G~  100 (120)
T 1ujt_A           27 LTPTTVQVTWTVDR---QPQFIQGYRVMYRQTSGLQAT-S--SWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQ  100 (120)
T ss_dssp             CBTTEEEEEEEESS---CCSSCCEEEEEEEESSSSSTT-T--CCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCC
T ss_pred             ccCceEEEEEccCC---CCCcEeeEEEEEEECCCCCCC-C--ccEEEEecCCCcCEEEECCCCCCCEEEEEEEEECCCcc
Confidence            68899999999743   478999999999987641000 0  12223333444679999999999999999999999999


Q ss_pred             CCCCccEEEEcCCCC-Ccc
Q psy6638         249 GPFSEPFIARTNEGD-FLF  266 (273)
Q Consensus       249 ~~~s~~~~~~t~~~~-P~~  266 (273)
                      |++|+.+.++|.+++ |+.
T Consensus       101 Gp~S~~v~~~T~e~v~Ps~  119 (120)
T 1ujt_A          101 GMDSESKTVRTTEESGPSS  119 (120)
T ss_dssp             CCCCCCEEEEECSSCCCCC
T ss_pred             CCCCCCEEEECCCCCCCCC
Confidence            999999999999999 974

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.69  E-value=1.9e-16  Score=117.85  Aligned_cols=145  Identities=19%  Similarity=0.240  Sum_probs=110.7

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE---ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV---QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~---~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      ..+.+.|.+|.+...|.|++.|.|..|.+..+..+.+   ...|.+|.++.+...+.+.+.|+|.+|...++.+.+|.|+
T Consensus        56 ~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~  135 (234)
T 3f7q_A           56 KVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVC  135 (234)
T ss_dssp             SSSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCCCCCCEEEECSSSCEEEECCCCSCCSSCCCEEEEE
T ss_pred             CccEEEECCCCCCCEEEEEEEEEeCCCcCCCCCeEEEEcCCCCCCCCCccEEEEecCCEEEEEEcCCCCCCCceeEEEEE
Confidence            3457999999999999999999998886654333333   4567788899999889999999999987777789999999


Q ss_pred             EEeCCCCCCCcc--ce-EEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcc-eEEEecCCCCCCCCe
Q psy6638          93 YKSSEEMWPTQP--LK-IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAE-LQASTLEEAPNGAPR  160 (273)
Q Consensus        93 ~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~-~~~~~~~~~p~~~p~  160 (273)
                      |+..........  .. .......+.+.+.+|.+++.|.|+|+|.|..|.|.++.. +.+.+.+..|+.+|.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~~~P~~~P~  207 (234)
T 3f7q_A          136 YGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPI  207 (234)
T ss_dssp             EEEBCTTSCBSSCCEECCCSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGSCCCCCCCCC
T ss_pred             EEECCCCCCccCcceEEEecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecCCCCCCCCcc
Confidence            997543211100  11 112234568999999999999999999999999988774 677777777766654

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.69  E-value=4.8e-16  Score=113.59  Aligned_cols=130  Identities=21%  Similarity=0.323  Sum_probs=103.9

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe---c-CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ---E-TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~---~-~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      +.+.|.+|.++..|.|+|.|.|..|.+..+..+.+.   . +|.+|..+.+.....+++.|+|.+|...++.+.+|.|++
T Consensus        68 ~~~~i~~L~p~t~Y~~~V~A~n~~G~~~~s~~~~~~T~~~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~  147 (209)
T 2vkw_A           68 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRY  147 (209)
T ss_dssp             SEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECCCSCSCCCCEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEE
T ss_pred             ceEEeCCCCCCCeEEEEEEEEcCCcccCCcccccccccCCCCCCCCcccccccccCCeEEEEEECcccCCCCCceEEEEE
Confidence            378899999999999999999998876553322232   2 588888887777888999999999866778999999999


Q ss_pred             EeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEe
Q psy6638          94 KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST  150 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~  150 (273)
                      +.....|..   ....+...+.+.+.+|.+++.|.|+|+|.|..|.|.++....+.+
T Consensus       148 ~~~~~~~~~---~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~~  201 (209)
T 2vkw_A          148 RALSSEWKP---EIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTA  201 (209)
T ss_dssp             EETTSCCCC---CEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECC
T ss_pred             ECCCCCCce---eeecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcchhhhhhh
Confidence            985555552   234455667899999999999999999999999988877655544

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.69  E-value=3.6e-16  Score=104.48  Aligned_cols=109  Identities=26%  Similarity=0.403  Sum_probs=84.7

Q ss_pred             CCCCCCCCcceEEEecCC------CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCcccee
Q psy6638         136 PLGMSETGAELQASTLEE------APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS  209 (273)
Q Consensus       136 ~~g~~~~s~~~~~~~~~~------~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~  209 (273)
                      ..|.|.++..+.+.+...      .| .+|.++++..  .+ +++.|+|++|..  .++.|.+|.|+|+. +...     
T Consensus         3 ~~G~g~~S~~~~~~T~~~~~~~~~~P-~~P~~l~~~~--~~-~sv~l~W~~P~~--~~g~i~~Y~v~y~~-~~~~-----   70 (126)
T 1x5i_A            3 SGSSGPATDWLSAETFESDLDETRVP-EVPSSLHVRP--LV-TSIVVSWTPPEN--QNIVVRGYAIGYGI-GSPH-----   70 (126)
T ss_dssp             SCCCCCCCCCCCSCCCCTTSBCSSCC-CSCSEEEEEE--ET-TEEEEEEECCSC--TTBCCCEEEEEECS-SCGG-----
T ss_pred             CCccCCCCCCEEeECccccCccCCCC-CCCCeeEEEe--cC-CEEEEEEcCCCC--CCCCEeEEEEEEEc-CCCC-----
Confidence            457888888888888876      55 4888999988  66 999999999975  47889999999984 2211     


Q ss_pred             eeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcC
Q psy6638         210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTN  260 (273)
Q Consensus       210 ~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~  260 (273)
                        . ...........++|.+|+|++.|.|+|+|+|..|.|+++.. .+.|.
T Consensus        71 --~-~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~-~~~T~  117 (126)
T 1x5i_A           71 --A-QTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYE-SAVTR  117 (126)
T ss_dssp             --G-EEEECCTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCC-CEECC
T ss_pred             --c-eEEEeCCCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceee-EEecc
Confidence              1 11123455689999999999999999999999999998864 34443

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.69  E-value=1.7e-15  Score=116.59  Aligned_cols=220  Identities=16%  Similarity=0.119  Sum_probs=123.1

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe-------------cCCCCCcc--eEEEEeec-cEEEEEEeCCCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ-------------ETPEAPKN--IRITEESS-RSLQISWTAPYS   81 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~-------------~~P~~p~~--~~~~~~~~-~~~~l~W~~~~~   81 (273)
                      .+|.|.++...|.|.|+|.+   .|.......+.+.             .++.||..  +....... ..++|+|.+...
T Consensus        51 ~~L~i~~~~~~d~G~YtC~~---~~~~~~~~~l~v~~~~~~~~~t~i~~~~~~pp~~~~lsC~~~~~~~~~~C~W~pg~~  127 (306)
T 3d85_D           51 KTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTIS  127 (306)
T ss_dssp             SEEEEEECSGGGCEEEEEEE---TTEEEEEEEEEEEEEETTEECCCSSCCCC---CCCCCEEEBSSSSSEEEEEEEESCC
T ss_pred             CEEEEEecCcCCCceEEEee---CCcccceEEEEEEeccCCcceeeeecccCCCCCCCcceEEcCCcccCcEEEecCCCC
Confidence            48999999999999999999   3555444444432             22334443  33333222 389999998654


Q ss_pred             CCccceEEEEEEEeCCCCCCCccc-eE-----EecCCc--cE--EEecCCCCC----CeEEEEEEEeCCCCCCCCCcceE
Q psy6638          82 GNTAITQYIIQYKSSEEMWPTQPL-KI-----IVPGSQ--TS--ATLQPLLPA----TQYQVRLLAENPLGMSETGAELQ  147 (273)
Q Consensus        82 ~~~~~~~y~v~~~~~~~~~~~~~~-~~-----~~~~~~--~~--~~~~~l~~~----~~y~~~v~a~~~~g~~~~s~~~~  147 (273)
                      .. ....|..........|..... ..     ..+...  ..  +.+..+.+.    ..|.|+|.|.|..|..  +....
T Consensus       128 ~~-l~~~~~~~r~~~~~~~~~C~~~~~~~~~c~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~--s~~~~  204 (306)
T 3d85_D          128 TD-LTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYE--QYTSS  204 (306)
T ss_dssp             SS-EEEEEEEEECSSSCEEEEECCCEEEEEEEC--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEE--EEEEE
T ss_pred             Cc-eeEEEEEEecCCCCcceECCCCCCCccceeecCccccceeeeeeccccccccccEEEEEEEEEEccCCcc--ccceE
Confidence            22 223444332111111110000 00     011100  11  123344444    4799999999987743  22244


Q ss_pred             EEecCCCCCCCCeeEEecCCccC-CceEEEEEeCCCCCC-ccc-eeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccE
Q psy6638         148 ASTLEEAPNGAPREVTSDPGVVD-PTELLIKWKAPPRES-WNG-VLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGE  224 (273)
Q Consensus       148 ~~~~~~~p~~~p~~~~~~~~~~~-~~~i~l~W~~~~~~~-~~~-~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (273)
                      +.....+.|.||.++++..  .. +..+.|+|++|.... +.+ ..+.|+|+|+..+...+       .....  ...++
T Consensus       205 f~~~~iVkPdPP~~l~~~~--~~~~~~l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~~~-------~~~~~--~~~ts  273 (306)
T 3d85_D          205 FFIRDIIKPDPPKNLQLKP--LKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREK-------KDRVF--TDKTS  273 (306)
T ss_dssp             ECHHHHBCCCCCEEEEEEE--C----CEEEEEECCTTSCSCTTTSCEEEEEEEECC-------------CEEE--ESSSE
T ss_pred             EEehhcEecCCCceEEEEE--ecCCCcEEEEEcCCCCCcCCCceeeEEEEEEEEECCCCcc-------EEEee--ccccE
Confidence            4443344456899998875  43 479999999987521 112 34799999997764321       11111  12346


Q ss_pred             EEcCCCCccceEEEEEEEecCCCcCCCCccEEE
Q psy6638         225 LRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA  257 (273)
Q Consensus       225 ~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~  257 (273)
                      +.|   .+++.|.|+|+|.+..|.|.||++...
T Consensus       274 ~~l---~~~~~Y~vqVRa~~~~~~G~WSeWS~~  303 (306)
T 3d85_D          274 ATV---ICRKNASISVRAQDRYYSSSWSEWASV  303 (306)
T ss_dssp             EEE---CCCSSCEEEEEEEESSSCCCCCCCEEE
T ss_pred             EEE---eCCCeEEEEEEeccCCCCCCCCCCCCC
Confidence            665   359999999999999899999987654

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=1e-16  Score=103.42  Aligned_cols=99  Identities=24%  Similarity=0.433  Sum_probs=80.0

Q ss_pred             cCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCC
Q psy6638         151 LEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL  230 (273)
Q Consensus       151 ~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  230 (273)
                      .+..|+.+|.++.+..  .+.+++.|+|++|.....++.+.+|.|+|+..+...       +...   ......+.|.+|
T Consensus         4 ~e~~pp~~P~~l~~~~--~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~-------~~~~---~~~~~~~~i~~L   71 (103)
T 2edy_A            4 GSSGPSGFPQNLHVTG--LTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQ-------ELQN---ITTDTRFTLTGL   71 (103)
T ss_dssp             TCCCCSCCCEEEECSS--BCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSCC-------EEEE---EESSSCCEECSC
T ss_pred             CCCCCCCCCeeeEEEe--cCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCCc-------cEEE---cCCcceEEEcCC
Confidence            4556778999999988  889999999999953234788999999999876531       1111   123578999999


Q ss_pred             CccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         231 TPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       231 ~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      +|++.|.|+|+|.|..|.|++|+.+.++|.+
T Consensus        72 ~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~p  102 (103)
T 2edy_A           72 KPDTTYDIKVRAWTSKGSGPLSPSIQSRTMP  102 (103)
T ss_dssp             CTTCCEEEECCEECSSCBCCCCCCCCCCCCC
T ss_pred             CCCCEEEEEEEEECCCCCCCCCCCEEEEecc
Confidence            9999999999999999999999999888864

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.68  E-value=1.5e-16  Score=105.45  Aligned_cols=106  Identities=25%  Similarity=0.377  Sum_probs=84.5

Q ss_pred             CCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEe
Q psy6638         138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL  217 (273)
Q Consensus       138 g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~  217 (273)
                      |.|.++..+.+.+....|. +|.++++..  .+.+++.|+|++|..  .+|.|.+|.|+|+..+....      ..... 
T Consensus         1 G~g~~S~~~~~~T~~~~P~-~P~~l~~~~--~~~~sv~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~------~~~~~-   68 (119)
T 1wfn_A            1 GSSGSSGPQLVRTHEDVPG-PVGHLSFSE--ILDTSLKVSWQEPGE--KNGILTGYRISWEEYNRTNT------RVTHY-   68 (119)
T ss_dssp             CCCCCSCCCSCCSSCCSCC-CCSCCEEES--CCSSEEEEECCCCTT--CCSCCCEEEEEEEESSCGGG------CCCEE-
T ss_pred             CCCCCCCCEEEECCCCCCC-CCCceEEEE--CCCCEEEEEEcCCCC--CCCcEEEEEEEEEECCCCCc------eEEEE-
Confidence            5567788888888887774 677888888  889999999999975  57889999999998764321      01111 


Q ss_pred             cCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccE
Q psy6638         218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF  255 (273)
Q Consensus       218 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~  255 (273)
                      .......++|.+|++++.|.|+|+|+|..|.|++|..+
T Consensus        69 ~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~  106 (119)
T 1wfn_A           69 LPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST  106 (119)
T ss_dssp             ECSSCCEEEEESCCTTCEEEEEEEEECSSCEEEEEEEE
T ss_pred             eCCCceEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCE
Confidence            22346789999999999999999999999999998776

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.68  E-value=3.6e-16  Score=102.03  Aligned_cols=101  Identities=23%  Similarity=0.296  Sum_probs=79.3

Q ss_pred             CCCCCCeeEEe-cCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCc
Q psy6638         154 APNGAPREVTS-DPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP  232 (273)
Q Consensus       154 ~p~~~p~~~~~-~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  232 (273)
                      .+|.+|.++.+ ..  ...+++.|.|++|..+. ++.|.+|.|+|+..+...+       ..+.  ......++|.+|.+
T Consensus         7 ~~P~~P~~~~~~~~--~~~~sv~l~W~~P~~~~-~~~i~~Y~v~~~~~~~~~~-------~~~~--~~~~~~~~v~~L~p   74 (110)
T 2crz_A            7 GPPGPCLPPRLQGR--PKAKEIQLRWGPPLVDG-GSPISCYSVEMSPIEKDEP-------REVY--QGSEVECTVSSLLP   74 (110)
T ss_dssp             CCCCCCCCCEECSC--CCSSEEEEECCCCSCCT-TSCCCEEEEEEECTTSCCC-------EEEE--EESCSEEEEESCCT
T ss_pred             CCCCCCCCceeccc--cCCCEEEEEeCCCCCCC-CceeEEEEEEEEeCCCCce-------EEEE--eCCcEEEEECCcCC
Confidence            34467778887 45  67889999998876432 5679999999987654321       1221  12357899999999


Q ss_pred             cceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         233 YTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       233 ~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      ++.|.|+|+|.|..|.|++|+.+.+.|.+++|..
T Consensus        75 ~t~Y~frV~A~n~~G~g~~S~~~~~~T~~~~P~~  108 (110)
T 2crz_A           75 GKTYSFRLRAANKMGFGPFSEKCDITTAPGSGPS  108 (110)
T ss_dssp             TCEEEECCEEECSSCBCCCCCCEEEECCCSCCCC
T ss_pred             CCEEEEEEEEEcCCccCCCCCccccccCCCCCCC
Confidence            9999999999999999999999999999988864

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.68  E-value=5.6e-16  Score=100.78  Aligned_cols=100  Identities=23%  Similarity=0.244  Sum_probs=79.4

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .| .+|.++++.....+.+++.|.|++|..  .++.|.+|.|+|+..+...+       ....   .....++|.+|+++
T Consensus         7 ~P-~~P~~l~~~~~~~~~~sv~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~-------~~~~---~~~~~~~l~~L~p~   73 (108)
T 2dm4_A            7 GP-DAPRNLQLSLPREAEGVIVGHWAPPIH--THGLIREYIVEYSRSGSKMW-------ASQR---AASNFTEIKNLLVN   73 (108)
T ss_dssp             CT-TSCEEEEEECCTTCSSCEEEEEECCSC--CSSCEEEEEEEEEETTCSCC-------EEEE---ESSSEEEECSCCSS
T ss_pred             CC-cCCcCeEEEEeccCCCEEEEEEcCCCC--CCCcEEEEEEEEEECCCCCe-------EEec---CCccEEEeCCCCCC
Confidence            44 488888664310478899999999974  57889999999998765321       1111   12468999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      +.|.|+|+|+|..|.|++|+.+.++|.+++|+.
T Consensus        74 t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~~  106 (108)
T 2dm4_A           74 TLYTVRVAAVTSRGIGNWSDSKSITTIKGSGPS  106 (108)
T ss_dssp             CEEEEEEEEEESSCEEEECCCEEEECCSCSSCC
T ss_pred             CEEEEEEEEECCCceeCCCCCEEEECCCCCCCC
Confidence            999999999999999999999999999888864

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.68  E-value=1.2e-14  Score=117.41  Aligned_cols=219  Identities=15%  Similarity=0.246  Sum_probs=140.5

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCC------ccceEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGN------TAITQYI   90 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~------~~~~~y~   90 (273)
                      .+.|....+.....+.|++.+.|..|. ...+.+.-...|.||.++.+.... ..+.|+|.+|....      .....|.
T Consensus        71 ~C~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~v~p~pP~~l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~  148 (419)
T 2gys_A           71 RCVIPCQSFVVTDVDYFSFQPDRPLGT-RLTVTLTQHVQPPEPRDLQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFE  148 (419)
T ss_dssp             EEEEECSCCCTTCEEEEEEEESSCCCE-EEEEEGGGSBCCCCCEEEEEEEET-TEEEEEEECCC-----CCSCGGGEEEE
T ss_pred             EeEeCCcceeeecccEEEEeCCccccc-cceEcHHHcccCCCCCceEEEecC-CeEEEEECCCccccccchhccCceEEE
Confidence            344444455555667778877665553 112222224689999999887765 69999999886421      3467899


Q ss_pred             EEEEeCCCCCCCccceEEecCCccEEEec--CCCCCCeEEEEEEEeCCCC------CCCCCcceEEEecCCCCCCCCeeE
Q psy6638          91 IQYKSSEEMWPTQPLKIIVPGSQTSATLQ--PLLPATQYQVRLLAENPLG------MSETGAELQASTLEEAPNGAPREV  162 (273)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~y~~~v~a~~~~g------~~~~s~~~~~~~~~~~p~~~p~~~  162 (273)
                      |+|+..+..|..... .  ......+.+.  +|.|++.|.|+|+|.+..|      +|.|+..+.+.+.+..| .+|.++
T Consensus       149 v~yr~~~~~w~~~~~-~--~~~~~~~~~~~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~~-~~p~~l  224 (419)
T 2gys_A          149 VVYKRLQDSWEDAAI-L--LSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDE-AQPQNL  224 (419)
T ss_dssp             EEEEETTSCSTTCEE-E--EESSSEEEECTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCCCT-TSCEEE
T ss_pred             EEEccCCCChhheee-e--cccceEEEechhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeecccccc-CCCceE
Confidence            999988777774322 1  1233445555  8999999999999998532      45667778888877764 578899


Q ss_pred             EecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCC-----CccceeeeeeeEEecC----CcccEEEcCCCCcc
Q psy6638         163 TSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGS-----SLALSSYTLKSVELDN----QYEGELRIPGLTPY  233 (273)
Q Consensus       163 ~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~~~i~~L~p~  233 (273)
                      .+..  .+...+.+.|+++..  ..+ ...|.|.|+.....     .......... .....    ...-.+.+.+|.+.
T Consensus       225 ~c~~--~~~~~l~c~W~~~~~--~~~-~~~y~l~y~~~~~~g~~~~~~~~~C~~~~-~~~~~~~~~~~~c~~~~~~l~~~  298 (419)
T 2gys_A          225 ECFF--DGAAVLSCSWEVRKE--VAS-SVSFGLFYKPSPDAGSAVLLREEECSPVL-REGLGSLHTRHHCQIPVPDPATH  298 (419)
T ss_dssp             EEEE--CSSSEEEEEEEEEHH--HHT-TCCEEEEEECC-----CCCCCCEECCCEE-EECCTTTEEEEEEEEECSCTTTC
T ss_pred             EEEE--CCceEEEeEEECCCC--CCC-ceeEEEEEEecCccccccCcccccCCCcc-cccCCCcceeEEeEEECccCCcc
Confidence            8887  788899999998732  112 25699999865321     1011100000 00000    01125678889999


Q ss_pred             ceEEEEEEEecCCC
Q psy6638         234 TKYAIVVRGYNSVG  247 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g  247 (273)
                      +.|.|+|.|.+..|
T Consensus       299 ~~y~i~V~a~~~~~  312 (419)
T 2gys_A          299 GQYIVSVQPRRAEK  312 (419)
T ss_dssp             CEEEEEEEECCCCE
T ss_pred             CEEEEEEEEccCCc
Confidence            99999999986544

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.68  E-value=1.5e-15  Score=111.09  Aligned_cols=137  Identities=19%  Similarity=0.276  Sum_probs=106.3

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE---ecCCC-CCcceEEEEe--eccEEEEEEeCCCCCCccceEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV---QETPE-APKNIRITEE--SSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~---~~~P~-~p~~~~~~~~--~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      .+.+.|.+|.+...|.|++.|.|..|.+..+..+.+   ...|. +|.++.+...  +...+.|+|.++...++.+.+|.
T Consensus        63 ~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~~g~i~~Y~  142 (211)
T 3p4l_A           63 TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYI  142 (211)
T ss_dssp             SSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTCCSCCCEEE
T ss_pred             ceEEEecCcCCCCEEEEEEEEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCCCCCEEEEE
Confidence            458999999999999999999998887654333333   33555 8888888777  47899999999877777899999


Q ss_pred             EEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCC
Q psy6638          91 IQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE  153 (273)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~  153 (273)
                      |+++..+................+.+.+.+|.+++.|.|+|+|.|..|.|.++..+.+.+...
T Consensus       143 v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~~~~  205 (211)
T 3p4l_A          143 IYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA  205 (211)
T ss_dssp             EEEESCTTSCGGGSEEEEEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECC--
T ss_pred             EEEEECCCCCCCceEEEEecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccCccc
Confidence            999976542111112234556778999999999999999999999999999999888877543

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.67  E-value=2.3e-16  Score=101.36  Aligned_cols=95  Identities=20%  Similarity=0.211  Sum_probs=76.0

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEE-ecCCcccEEEcCCCCcc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE-LDNQYEGELRIPGLTPY  233 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~  233 (273)
                      |+.+|.++.+..   ..+++.|+|++|..  .++.|.+|.|+|+..+..+        .... ......+.+++.+|.++
T Consensus         7 p~~pP~~l~v~~---~~~sv~L~W~pP~~--~~~~I~gY~vey~~~~~~W--------~~~~~~~~~~~t~~~v~~L~pg   73 (108)
T 1v5j_A            7 GLSPPRGLVAVR---TPRGVLLHWDPPEL--VPKRLDGYVLEGRQGSQGW--------EVLDPAVAGTETELLVPGLIKD   73 (108)
T ss_dssp             CCCCCEEEEEEE---CSSSEEEEEECCSC--CSSCCCBEEEEEEETTCCC--------EEEEEEECSSCCEEECCCCCTT
T ss_pred             CCCCCcceEEEE---eCCEEEEEECCCCC--CCCCCcEEEEEEEeCCCCc--------EEeeeecCCCcCEEEeCCCCCC
Confidence            447898998865   45789999999986  4789999999999843322        1111 12344689999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      +.|.|||.|+|..|.|++|+.+.+.|...
T Consensus        74 ~~Y~FRV~A~n~~G~s~pS~~~~v~T~~~  102 (108)
T 1v5j_A           74 VLYEFRLVAFAGSFVSDPSNTANVSTSGL  102 (108)
T ss_dssp             SCEECCBEEEETTEEEEECSCCCCCCSSC
T ss_pred             CEEEEEEEEEcCCCCcCCCCCEEEEeCCc
Confidence            99999999999999999999999998754

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=99.67  E-value=5.5e-16  Score=100.19  Aligned_cols=99  Identities=23%  Similarity=0.392  Sum_probs=75.4

Q ss_pred             CCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccce-eeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCC
Q psy6638         153 EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGV-LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT  231 (273)
Q Consensus       153 ~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~-i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~  231 (273)
                      .+|. +|.++.+..  .+.+ +.|+|++|..  .+|. |.+|.|+|+..+...+...   +.... .......++|.+|+
T Consensus         5 ~~P~-~P~~~~~~~--~~~~-v~l~W~~P~~--~~G~pi~~Y~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~i~~L~   74 (105)
T 2haz_A            5 DTPS-SPSIDQVEP--YSST-AQVQFDEPEA--TGGVPILKYKAEWRAVGEEVWHSK---WYDAK-EASMEGIVTIVGLK   74 (105)
T ss_dssp             CCCC-CCEEEEEEE--CSSC-EEEEEECCSC--CTTSCCCEEEEEEEETTCCCCEEE---EEEHH-HHHHHSEEEECSCC
T ss_pred             CCCc-CCCCCEEEE--cCCc-EEEEEcCCcc--cCCccccEEEEEEEECCCCCCccc---eEEcc-ccCCccEEEECCCC
Confidence            4554 588888877  6666 9999999965  4676 9999999998765422110   01111 11135789999999


Q ss_pred             ccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         232 PYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       232 p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      |++.|.|+|+|+|..|.|++|+...|+|.+
T Consensus        75 p~t~Y~~rV~A~n~~G~g~~S~~~~~~T~p  104 (105)
T 2haz_A           75 PETTYAVRLAALNGKGLGEISAASEFKTQP  104 (105)
T ss_dssp             TTCEEEEEEEEEETTEECCCCCCEEEECCC
T ss_pred             CCCEEEEEEEEEcCCccCCCcCCEeeEEec
Confidence            999999999999999999999999999975

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.67  E-value=5.3e-16  Score=100.76  Aligned_cols=102  Identities=22%  Similarity=0.288  Sum_probs=78.5

Q ss_pred             cCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCC
Q psy6638         151 LEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL  230 (273)
Q Consensus       151 ~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  230 (273)
                      .+.+|. +|. +.+..  .+.+++.|+|++|..  .++.|.+|.|+|+..+...+       .... .......++|.+|
T Consensus         4 ~~~~P~-~p~-~~v~~--~~~~sv~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~-------~~~~-~~~~~~~~~i~~L   69 (107)
T 2dn7_A            4 GSSGPG-RPT-MMIST--TAMNTALLQWHPPKE--LPGELLGYRLQYCRADEARP-------NTID-FGKDDQHFTVTGL   69 (107)
T ss_dssp             CCCCCC-CCE-EEEEE--CSTTEEEEEEECCSS--CSSCCCEEEEEEEETTCSSC-------EEEE-EETTCCEEEEECC
T ss_pred             CCCCCC-CCc-EeEEe--cCCCEEEEEECCCCC--CCCceeEEEEEEEECCCCCC-------EEEE-eCCCccEEEeCCC
Confidence            344564 444 55555  688899999999875  57889999999998764321       1222 2233578999999


Q ss_pred             CccceEEEEEEEecCCCcCCCCccEEEEcCCCCCccc
Q psy6638         231 TPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFL  267 (273)
Q Consensus       231 ~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~~  267 (273)
                      .|++.|.|+|+|+|..|.|+++. ..+.|.+++|+..
T Consensus        70 ~p~t~Y~~~V~A~n~~G~g~~s~-~~~~T~~~~P~~p  105 (107)
T 2dn7_A           70 HKGTTYIFRLAAKNRAGLGEEFE-KEIRTPEDLSGPS  105 (107)
T ss_dssp             CTTCEEEEEEEEEETTEEEEEEE-EEEECCCCCCCCC
T ss_pred             CCCCEEEEEEEEEcCCcccCCee-eEEeCCCCCCCCC
Confidence            99999999999999999999987 6789999988765

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=1.4e-15  Score=99.25  Aligned_cols=102  Identities=20%  Similarity=0.230  Sum_probs=78.4

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .+|.+|.++++..  .+.+++.|.|.+|.... +..+.+|.|+|+..+...       +............+++.+|.++
T Consensus         6 ~~P~~P~~l~~~~--~~~~sv~l~W~~p~~~g-~~~i~~Y~v~~~~~~~~~-------w~~~~~~~~~~~~~~v~~L~p~   75 (110)
T 2yuw_A            6 SGTSPPTLLTVDS--VTDTTVTMRWRPPDHIG-AAGLDGYVLEYCFEGTED-------WIVANKDLIDKTKFTITGLPTD   75 (110)
T ss_dssp             CCSCCCEEEEEEE--ECSSCEEEEEECCSSCC-SSCEEEEEEEEEETTCSS-------EEECCSSCCCSSEEEECSCCTT
T ss_pred             CCCCCCCccEEEe--ccCCeEEEEECCCCCCC-CCCccEEEEEEEECCCcc-------ceEeccccCccCEEEECCCCCC
Confidence            3556888898887  88999999999987532 457899999999875432       2222222334678999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccE-EEEcCCCCCc
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPF-IARTNEGDFL  265 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~-~~~t~~~~P~  265 (273)
                      +.|.|+|+|+|..|.|++|... .+.+.+.+|+
T Consensus        76 t~Y~frV~A~n~~G~s~~S~~~~~v~~~~~~P~  108 (110)
T 2yuw_A           76 AKIFVRVKAVNAAGASEPKYYSQPILVKESGPS  108 (110)
T ss_dssp             CEEEEEEEEEETTEECCCEECSSCEECCCCCCC
T ss_pred             CEEEEEEEEEcCCcCCCCcCCCCCEEecCCCCC
Confidence            9999999999999999988765 4666666665

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.66  E-value=5.4e-15  Score=114.27  Aligned_cols=132  Identities=29%  Similarity=0.514  Sum_probs=109.9

Q ss_pred             CCcEEEEEEee-eeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCC-CCCccceEEEE
Q psy6638          14 DGMISELGIAN-VLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPY-SGNTAITQYII   91 (273)
Q Consensus        14 ~~~~~~l~i~~-~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v   91 (273)
                      .+....|.|.+ +.+.|.|.|+|.|.|..|.....+.+.+..+|.+|.++.+.......+.|+|.+|. +++.++..|.+
T Consensus       156 ~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v  235 (305)
T 2nzi_A          156 TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIV  235 (305)
T ss_dssp             CSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEE
T ss_pred             cCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEE
Confidence            34567899999 99999999999999999999889999999999999999888888999999999864 45557889999


Q ss_pred             EEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEe
Q psy6638          92 QYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST  150 (273)
Q Consensus        92 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~  150 (273)
                      +++... ..|...     .......+.|.+|.+++.|.|+|.|.|..|.+.++......+
T Consensus       236 ~~~~~~~~~w~~~-----~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~~~  290 (305)
T 2nzi_A          236 EKCATTAERWLRV-----GQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTI  290 (305)
T ss_dssp             EEEETTSCCEEEE-----EEESSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCCEE
T ss_pred             EEecCCCCccEEC-----ccccCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCCEE
Confidence            998865 345421     111356889999999999999999999999998887665444

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=1.9e-15  Score=97.96  Aligned_cols=98  Identities=26%  Similarity=0.415  Sum_probs=79.6

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      ++.+|.++.+..  .+.+++.|.|+++.    ++.+.+|.|+|+..+...      .+..+  .......++|.+|.+++
T Consensus         7 ~P~~P~~~~~~~--~~~~sv~l~W~~~~----~~~i~~Y~v~~~~~~~~~------~~~~~--~~~~~~~~~i~~L~p~t   72 (106)
T 2dju_A            7 GPKPPIDLVVTE--TTATSVTLTWDSGN----SEPVTYYGIQYRAAGTEG------PFQEV--DGVATTRYSIGGLSPFS   72 (106)
T ss_dssp             SCCCCEEEEEEE--EETTEEEEEEECCC----SSCCSEEEEEEEETTCCS------CCCCB--CCCCSSEEEEESCCTTC
T ss_pred             CCcCCCCcEEEe--ccCCEEEEEEcCCC----CCCceEEEEEEEECCCCC------CeEEc--cCCCccEEEEeCCCCCc
Confidence            346888998887  78899999999883    567899999999876432      11111  22335789999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      .|.|+|+|+|..|.|++|+.+.++|.+++|..
T Consensus        73 ~Y~~~V~A~n~~G~~~~S~~~~~~T~~~~P~~  104 (106)
T 2dju_A           73 EYAFRVLAVNSIGRGPPSEAVRARTGEQSGPS  104 (106)
T ss_dssp             EEEEEEEEECSSCBCCCCCCEEEECCCSSCCC
T ss_pred             EEEEEEEEEeCCccCCCcccEEeEcCCCCCCC
Confidence            99999999999999999999999999988874

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=2.7e-15  Score=101.59  Aligned_cols=114  Identities=28%  Similarity=0.420  Sum_probs=90.5

Q ss_pred             ecCCC-CCcceEEEEeeccEEEEEEeCC--CCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEE
Q psy6638          53 QETPE-APKNIRITEESSRSLQISWTAP--YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQV  129 (273)
Q Consensus        53 ~~~P~-~p~~~~~~~~~~~~~~l~W~~~--~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~  129 (273)
                      ...|. +|.++++......++.|+|.++  ...++.+.+|.|+|+...................+.+.+.+|.+++.|.|
T Consensus        15 ~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   94 (134)
T 2edx_A           15 QSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRV   94 (134)
T ss_dssp             CSCCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSEEEEESCCTTCEEEE
T ss_pred             CCCCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccEEEeCCCCCCCEEEE
Confidence            34565 7889988888899999999998  55677899999999886543221111111245678899999999999999


Q ss_pred             EEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecC
Q psy6638         130 RLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP  166 (273)
Q Consensus       130 ~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~  166 (273)
                      +|+|.|..|.|.++..+.+++....|..+|.++++..
T Consensus        95 ~V~A~n~~G~g~~S~~~~~~T~~~~P~~~P~~l~~~~  131 (134)
T 2edx_A           95 WVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGP  131 (134)
T ss_dssp             EEEEEETTBCCCCCCCEEEECCCCSSCCCCCCCCCCC
T ss_pred             EEEEEcCCCcCCCCCCEEeecCCCCCCCCCceeEEEE
Confidence            9999999999999999999999888877888887755

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.66  E-value=8.6e-16  Score=102.97  Aligned_cols=114  Identities=29%  Similarity=0.495  Sum_probs=90.6

Q ss_pred             EEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC---CCCCCccceEEecCCccEEEecCCCC
Q psy6638          47 TIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE---EMWPTQPLKIIVPGSQTSATLQPLLP  123 (273)
Q Consensus        47 ~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~  123 (273)
                      .+.+.+..+|.+|.++.+.....+.+.|+|.++.++++++.+|.|+++...   ..|..   ........+. .+.+|.|
T Consensus         8 ~~~~~v~~~P~~P~~~~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~w~~---~~~~~~~~~~-~i~~L~p   83 (127)
T 1uey_A            8 PTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHH---QTEVSGTQTT-AQLNLSP   83 (127)
T ss_dssp             CCCCCCCCSCCCCEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEE---EEEEESSCCE-EEECCCT
T ss_pred             EEEEEeecCCcCCCCcEEEEccCCEEEEEEECCCCCCCCceEEEEEEEECCCCCCccEE---EeeeCCCceE-EEecCCC
Confidence            455667789999999999888999999999988777788999999998753   33431   1122333444 4679999


Q ss_pred             CCeEEEEEEEeCCCCCCCCCcc-eEEEecCCCCCCCCeeEEe
Q psy6638         124 ATQYQVRLLAENPLGMSETGAE-LQASTLEEAPNGAPREVTS  164 (273)
Q Consensus       124 ~~~y~~~v~a~~~~g~~~~s~~-~~~~~~~~~p~~~p~~~~~  164 (273)
                      ++.|.|+|+|.|..|.+.++.. ..+++....|..+|.++.+
T Consensus        84 ~t~Y~frV~A~n~~G~s~~S~~~~~~~T~~~~P~~~P~~v~~  125 (127)
T 1uey_A           84 YVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPS  125 (127)
T ss_dssp             TCEECCEEEEEESSCBCCCCSCCCCEECCCSSCSSCSSCCCC
T ss_pred             CCEEEEEEEEEeCCccCCccccccceEcCCCCCCCCCceeEe
Confidence            9999999999999999999887 4788888888778877765

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.66  E-value=1.4e-15  Score=101.08  Aligned_cols=101  Identities=18%  Similarity=0.164  Sum_probs=77.6

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcC-CCCccceeeeeeeEE-ecCCcccEEEcCCCC
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISS-GSSLALSSYTLKSVE-LDNQYEGELRIPGLT  231 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~  231 (273)
                      .+|.+|.++.+..  .+.+++.|.|.++.+  .++.|.+|.|+|+..+ ...       |.... ........++|.+|.
T Consensus        16 ~~P~~P~~~~~~~--~~~~sv~l~W~p~~~--~~~~i~~Y~v~~~~~~~~~~-------w~~~~~~~~~~~~~~~v~~L~   84 (121)
T 1x4z_A           16 SPPEAPDRPTIST--ASETSVYVTWIPRGN--GGFPIQSFRVEYKKLKKVGD-------WILATSAIPPSRLSVEITGLE   84 (121)
T ss_dssp             CCCCCCCCCEEEE--CCSSEEEEECCCCCC--TTSCCCEEEEEEEESSSCCC-------CEEEEEEECTTCCEEEEESCC
T ss_pred             CCCccCCCCEEEE--ccCCEEEEEEECCCC--CCCcceEEEEEEEECCCCCc-------eEEeecccCCCcCEEEECCCC
Confidence            4556888888877  789999999997654  3567999999999875 221       12221 113346789999999


Q ss_pred             ccceEEEEEEEecCCCcCCCCccEE-EEcCCCCCc
Q psy6638         232 PYTKYAIVVRGYNSVGKGPFSEPFI-ARTNEGDFL  265 (273)
Q Consensus       232 p~~~Y~~~v~a~n~~g~~~~s~~~~-~~t~~~~P~  265 (273)
                      +++.|.|+|+|+|..|.|++|.... +.+.+.+|+
T Consensus        85 p~t~Y~frV~A~n~~G~s~~S~~~~~v~~~~~~P~  119 (121)
T 1x4z_A           85 KGISYKFRVRALNMLGESEPSAPSRPYVVSGSGPS  119 (121)
T ss_dssp             TTCEEEEEEEEEETTEECCCCCCCCCEECCSSCCC
T ss_pred             CCCEEEEEEEEEcCCCcCCCcCCCCCEEcCCCCCC
Confidence            9999999999999999999988764 777777665

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.66  E-value=9e-16  Score=100.30  Aligned_cols=102  Identities=21%  Similarity=0.306  Sum_probs=78.1

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .+|.+|.++++..  .+.+++.|+|++|.... +..+.+|.|+|+..+...       +............+++.+|.++
T Consensus         7 ~~P~~P~~l~~~~--~~~~sv~l~W~~p~~~~-~~~i~~Y~v~~~~~~~~~-------w~~~~~~~~~~~~~~v~~L~p~   76 (111)
T 1x5y_A            7 GPTSAPQHLTVED--VTDTTTTLKWRPPDRIG-AGGIDGYLVEYCLEGSEE-------WVPANKEPVERCGFTVKDLPTG   76 (111)
T ss_dssp             SCCCCCEEEEEEE--ECSSEEEEEEECCSCCC-SSCCCEEEEEEEETTCCC-------CEESSSSCBSSSEEEEECCCTT
T ss_pred             CCCcCCCCCEEEe--ccCCEEEEEECCCCcCC-CCcccEEEEEEEECCCCc-------eEEccccCCcccEEEECCCCCC
Confidence            4557888999888  88999999999987632 335999999999876532       2222212234578999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccE-EEEcCCCCCc
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPF-IARTNEGDFL  265 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~-~~~t~~~~P~  265 (273)
                      +.|.|+|+|+|..|.|++|... .+.+.+.+|+
T Consensus        77 t~Y~frV~A~n~~G~s~~S~~~~~v~~~~~~P~  109 (111)
T 1x5y_A           77 ARILFRVVGVNIAGRSEPATLLQPVTIRESGPS  109 (111)
T ss_dssp             CCEEEEEEEEETTEECCCCCCSSCBCCCCCCCC
T ss_pred             CEEEEEEEEEcCCcCCCCccCCCCEEecCCCCC
Confidence            9999999999999999998765 4666666664

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.65  E-value=1.3e-15  Score=100.01  Aligned_cols=102  Identities=15%  Similarity=0.177  Sum_probs=74.2

Q ss_pred             CCCCCCCeeEEecCCccCCceEEEEEeCCCCCC---ccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCC
Q psy6638         153 EAPNGAPREVTSDPGVVDPTELLIKWKAPPRES---WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG  229 (273)
Q Consensus       153 ~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~---~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  229 (273)
                      ..|+.+|....+..  .+.++++|.|++|.++.   .++.|.+|.|+.......       .+..+...  ..+.++|.+
T Consensus        13 ~~pp~~P~~p~v~~--vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~-------~~~~v~~~--~~t~~~v~g   81 (120)
T 1wfu_A           13 VVPLSKPHPPVVGK--VTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH-------SYGVIYTG--YATRHVVEG   81 (120)
T ss_dssp             CCCCCCCCCCBCCC--EETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTC-------CEEEEEEE--SCSEEEEES
T ss_pred             eCCCCCCCCceece--EECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCC-------ceEEEecC--CccEEEECC
Confidence            34445555555666  78999999999998743   123389999994322221       22222222  246799999


Q ss_pred             CCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         230 LTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       230 L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                      |+|++.|.|+|+|.|..|.|++|+.+.++|...+++
T Consensus        82 L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~p~~  117 (120)
T 1wfu_A           82 LEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGP  117 (120)
T ss_dssp             CCTTCEEEEEEEEECSSSCEEECCCEEEECCCCCCC
T ss_pred             CCCCCEEEEEEEEECCCCCCCCCccEeeEcCCCCCC
Confidence            999999999999999999999999999999887543

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.65  E-value=4e-15  Score=96.26  Aligned_cols=99  Identities=24%  Similarity=0.337  Sum_probs=82.3

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ..+|.+|.++++...+.+++.|+|.++..++..+.+|.|+++.....|.     .......+.+.+.+|.+++.|.|+|+
T Consensus         5 ~~~P~~P~~~~~~~~s~~sv~l~W~~p~~~g~~i~~Y~v~~~~~~~~~~-----~~~~~~~~~~~v~~L~p~t~Y~frV~   79 (106)
T 1x4x_A            5 SSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQ-----ICYCGPGLSYEIKGLSPATTYYCRVQ   79 (106)
T ss_dssp             CCSCCCCCCCCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTTSCC-----EEEEESCSEEEEESCCSSCEEEEEEE
T ss_pred             CCCcCCCCCCEEEEcCCCEEEEEEcCCCCCCCcceEEEEEEEcCCCceE-----EEEeCCcceEEEcCCCCCCEEEEEEE
Confidence            3578899999999999999999999987655589999999987654443     12334567899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCCC
Q psy6638         133 AENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      |.|..|.+.++..+.+.+....|.
T Consensus        80 A~n~~G~g~~S~~v~~~T~~~~P~  103 (106)
T 1x4x_A           80 ALSVVGAGPFSEVVACVTPPSSGP  103 (106)
T ss_dssp             EECSSCCCCBCCCEEEECCCCCSC
T ss_pred             EEcCCcCCCCcCCEEEECCCCCcC
Confidence            999999999999999998776664

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.1e-15  Score=99.60  Aligned_cols=98  Identities=21%  Similarity=0.361  Sum_probs=74.4

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      +|+.|+..+....  .+.+++.|.|+++.+.  ++.|.+|.|+|+..+...       +.....  .....++|.+|.++
T Consensus         9 ~P~~P~~~~~~~~--~~~~sv~l~W~~p~~~--~~~i~~Y~v~~~~~~~~~-------~~~~~~--~~~~~~~v~~L~p~   75 (110)
T 2db8_A            9 VPATPILQLEECC--THNNSATLSWKQPPLS--TVPADGYILELDDGNGGQ-------FREVYV--GKETMCTVDGLHFN   75 (110)
T ss_dssp             CCCCCBCCCCCCS--CSSSEEEECCBCCTTC--CSCCSEEEEEECCSSSSC-------CEEEEE--ESCSCEEEECCCSS
T ss_pred             CCCCccccceeec--cCCCEEEEEECCCCCC--CCCccEEEEEEEeCCCCc-------eEEEEe--CCcCEEEECCCCCC
Confidence            4544544444444  5789999999999873  478899999998754322       222221  13578999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEcCCCCC
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIARTNEGDF  264 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P  264 (273)
                      +.|.|+|+|+|..|.|++|+.+.++|.+.++
T Consensus        76 t~Y~frV~A~n~~G~s~~S~~~~~~T~~~p~  106 (110)
T 2db8_A           76 STYNARVKAFNKTGVSPYSKTLVLQTSEGSG  106 (110)
T ss_dssp             SCCEEEEEEECSSCBCCCCSCEECCCCCCCC
T ss_pred             CEEEEEEEEEeCCcCCCCCCCEEEEcCCCCC
Confidence            9999999999999999999999999987653

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.64  E-value=1.3e-15  Score=102.62  Aligned_cols=121  Identities=19%  Similarity=0.242  Sum_probs=94.3

Q ss_pred             EEEEcCCCCceeEE---EEE-EecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEec
Q psy6638          35 CLATNYHGTAEMTI---QLL-VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVP  110 (273)
Q Consensus        35 ~~a~n~~g~~~~~~---~~~-~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~  110 (273)
                      +.|.|..|.+..+.   .+. ....|.+|.++.+.....+++.|+|.+|...++.+.+|.|+|+.....+. ........
T Consensus         3 V~A~n~~G~g~~S~~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~-~~~~~~~~   81 (130)
T 1wfo_A            3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTAN-TATVEVLA   81 (130)
T ss_dssp             CCCCCCCCCCCCCCCCSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCCS-CCCEEEEC
T ss_pred             eEEEecccCCCCCCCcEEEEcCCCCCCCCCceEEEecCCCEEEEEEcCCCCCCCceEEEEEEEEECCCCCc-eEEEEEeC
Confidence            45667777765432   222 24678899999999999999999999987777789999999998654322 11123455


Q ss_pred             CCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCC
Q psy6638         111 GSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       111 ~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      ...+.+.+.+|.+++.|.|+|+|.|..|.|.++..+.++|....|+
T Consensus        82 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pp  127 (130)
T 1wfo_A           82 PSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSGP  127 (130)
T ss_dssp             TTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCSSCCCC
T ss_pred             CCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEecCCCCCC
Confidence            6778999999999999999999999999999998888888777665

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.64  E-value=1.2e-15  Score=99.30  Aligned_cols=98  Identities=20%  Similarity=0.131  Sum_probs=75.4

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccc-eeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNG-VLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~-~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      .+|....+..  .+.+++.|.|.++...  ++ .|.+|.|+|+..+....      +.....  .....+++.+|++++.
T Consensus         9 ~~P~~p~~~~--~~~~sv~l~W~~p~~~--~~~~i~~Y~v~~~~~~~~~~------~~~~~~--~~~~~~~v~~L~p~t~   76 (109)
T 1x5x_A            9 SMPASPVLTK--AGITWLSLQWSKPSGT--PSDEGISYILEMEEETSGYG------FKPKYD--GEDLAYTVKNLRRSTK   76 (109)
T ss_dssp             CCCCCCEEEE--ECSSEEEEECCCCSSC--CSSSSCEEEEEECCSSSSCC------CEEEEE--ESCSEEEEESCCSSCE
T ss_pred             cCCCCCEEEE--ccCCEEEEEEcCCCCC--CCCcccEEEEEEecCCCCcc------eEEeEe--CCccEEEECCCCCCCE
Confidence            3444445555  7889999999999763  44 78999999987654211      111111  1247899999999999


Q ss_pred             EEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         236 YAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       236 Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      |.|+|+|+|..|.|++|..+.+.|.++.|..
T Consensus        77 Y~frV~A~n~~G~s~~S~~~~~~T~~~~P~~  107 (109)
T 1x5x_A           77 YKFKVIAYNSEGKSNPSEVVEFTTCPDSGPS  107 (109)
T ss_dssp             EEEEEEEECSSCEEEECCCEEEECCCCCCCC
T ss_pred             EEEEEEEEeCCCCcCCccCEEeEeCCCCCCC
Confidence            9999999999999999999999999988864

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.63  E-value=1.9e-15  Score=100.41  Aligned_cols=100  Identities=21%  Similarity=0.274  Sum_probs=78.8

Q ss_pred             CCCCCeeE--EecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeE-EecCCcccEEEcCCCC
Q psy6638         155 PNGAPREV--TSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSV-ELDNQYEGELRIPGLT  231 (273)
Q Consensus       155 p~~~p~~~--~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~  231 (273)
                      ++.+|.++  .+..  .+.+++.|.|.++.+  .++.|.+|.|+|+..+..        +..+ .........++|.+|.
T Consensus        17 ~P~~P~~~~~~~~~--~~~~sv~l~W~~p~~--~~~~i~~Y~v~~~~~~~~--------~~~~~~~~~~~~~~~~v~~L~   84 (121)
T 1wf5_A           17 LPHAPEHPVATLST--VERRAINLTWTKPFD--GNSPLIRYILEMSENNAP--------WTVLLASVDPKATSVTVKGLV   84 (121)
T ss_dssp             CCCCCSSCEEEECS--SSTTEEEEECCCCCC--CSSCEEEEEEEEECTTCC--------CEEEESSCCTTCCEEEEESCC
T ss_pred             CCccCCCcceeeEe--ccCCEEEEEEcCCCC--CCCcceEEEEEEEcCCCC--------ceEeEcccCCCccEEEECCcC
Confidence            34567777  7777  788999999999854  356899999999987532        2222 2233446789999999


Q ss_pred             ccceEEEEEEEecCCCcCCCCccE-EEEcCCCCCcc
Q psy6638         232 PYTKYAIVVRGYNSVGKGPFSEPF-IARTNEGDFLF  266 (273)
Q Consensus       232 p~~~Y~~~v~a~n~~g~~~~s~~~-~~~t~~~~P~~  266 (273)
                      |++.|.|+|+|.|..|.|++|... .++|.+.+|+.
T Consensus        85 p~t~Y~frV~A~n~~G~s~~S~~~~~~~t~~~~P~~  120 (121)
T 1wf5_A           85 PARSYQFRLCAVNDVGKGQFSKDTERVSLPESGPSS  120 (121)
T ss_dssp             TTCEEEEEEEEEESSCEEEECCCCSCEECCCCSSCC
T ss_pred             CCCEEEEEEEEEcCCccCCCcCCcceeEcCCCCCCC
Confidence            999999999999999999999876 58898888864

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.63  E-value=4.6e-15  Score=99.39  Aligned_cols=102  Identities=16%  Similarity=0.121  Sum_probs=76.3

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      +|.+|.++.+..  .+.+++.|.|+++.+  .++.|.+|.|+|+.......     .|............ .+.+|.|++
T Consensus        16 ~P~~P~~~~~~~--~~~~sv~l~W~p~~~--~~~~i~~Y~v~~~~~~~~~~-----~w~~~~~~~~~~~~-~i~~L~p~t   85 (127)
T 1uey_A           16 VPNPPFDLELTD--QLDKSVQLSWTPGDD--NNSPITKFIIEYEDAMHKPG-----LWHHQTEVSGTQTT-AQLNLSPYV   85 (127)
T ss_dssp             SCCCCEEEEEEC--CSSSCEEEEEECCCC--CSSCEEEEEEEEEBTTTCTT-----CEEEEEEEESSCCE-EEECCCTTC
T ss_pred             CCcCCCCcEEEE--ccCCEEEEEEECCCC--CCCCceEEEEEEEECCCCCC-----ccEEEeeeCCCceE-EEecCCCCC
Confidence            446888999988  899999999998754  36789999999987643211     12222222222234 467999999


Q ss_pred             eEEEEEEEecCCCcCCCCcc-EEEEcCCCCCcc
Q psy6638         235 KYAIVVRGYNSVGKGPFSEP-FIARTNEGDFLF  266 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~-~~~~t~~~~P~~  266 (273)
                      .|.|+|+|.|..|.|++|.. ..++|.+.+|..
T Consensus        86 ~Y~frV~A~n~~G~s~~S~~~~~~~T~~~~P~~  118 (127)
T 1uey_A           86 NYSFRVMAVNSIGKSLPSEASEQYLTKASEPDK  118 (127)
T ss_dssp             EECCEEEEEESSCBCCCCSCCCCEECCCSSCSS
T ss_pred             EEEEEEEEEeCCccCCccccccceEcCCCCCCC
Confidence            99999999999999999988 478998877653

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=2.1e-15  Score=99.21  Aligned_cols=105  Identities=20%  Similarity=0.238  Sum_probs=78.5

Q ss_pred             EEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEE
Q psy6638         147 QASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR  226 (273)
Q Consensus       147 ~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (273)
                      ...+.+...|.+|.++++..  .+ +++.|+|++|..  .+|.|.+|.|+|+.... +.        ...........++
T Consensus         9 ~~~t~e~~~P~~P~~l~~~~--~~-~sv~l~W~~P~~--~ng~i~gY~i~y~~~~~-~~--------~~~~~~~~~~~~~   74 (116)
T 2edb_A            9 ENDLDESQVPDQPSSLHVRP--QT-NCIIMSWTPPLN--PNIVVRGYIIGYGVGSP-YA--------ETVRVDSKQRYYS   74 (116)
T ss_dssp             SSSCBCSSCCCCCSCEEEEE--CS-SCEEEEECCCSC--TTBCCCEEEEEEEESST-TS--------EEEEEETTCCEEE
T ss_pred             cccCCCCCCCCCCCCeEEEE--CC-CEEEEEEcCCCC--CCCceeEEEEEEEeCCC-Ce--------EEEEeCCCeeEEE
Confidence            33444423335888999888  77 999999999976  47889999999986332 10        1111223457899


Q ss_pred             cCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         227 IPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       227 i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      |.+|++++.|.|+|+|+|..|.|+++ ...+.|.++.|..
T Consensus        75 l~~L~p~t~Y~~~V~A~n~~G~g~~~-~~~~~T~~~~P~p  113 (116)
T 2edb_A           75 IERLESSSHYVISLKAFNNAGEGVPL-YESATTRSITSGP  113 (116)
T ss_dssp             ECSCCSSSBEEEEEEEEETTEECSCE-EECCBCCCSSSCS
T ss_pred             eCCCCCCCEEEEEEEEEeCCccCCCC-cceeecccCCCCC
Confidence            99999999999999999999999866 4668888877753

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.63  E-value=6.2e-16  Score=113.52  Aligned_cols=142  Identities=23%  Similarity=0.353  Sum_probs=106.3

Q ss_pred             EEEEEEeee-eeCCCEEEEEEEEcCCCCcee-EEEEEE--ecCCCCCcceEEEEe--eccEEEEEEeCCCCCCccceEEE
Q psy6638          17 ISELGIANV-LRQDSGTLSCLATNYHGTAEM-TIQLLV--QETPEAPKNIRITEE--SSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        17 ~~~l~i~~~-~~~~~~~y~~~a~n~~g~~~~-~~~~~~--~~~P~~p~~~~~~~~--~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      .+.+.|.+| .+...|.|+|.|.|..|.... ...+..  ..+|.+|.++.+...  +.+++.|+|.+|...++.+.+|.
T Consensus        61 ~~~~~i~~L~~~~t~Y~~~V~A~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~  140 (215)
T 1bqu_A           61 PTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYN  140 (215)
T ss_dssp             TTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEE
T ss_pred             cceEEEcCCccccccEEEEEEEEecccCccCCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCCCCCcceEEEE
Confidence            357889999 899999999999999988753 222222  357889999888764  67899999998876566789999


Q ss_pred             EEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC---CCCcceEEEecCCCCCCCC
Q psy6638          91 IQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS---ETGAELQASTLEEAPNGAP  159 (273)
Q Consensus        91 v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~---~~s~~~~~~~~~~~p~~~p  159 (273)
                      |+|+..+ ..|...... ......+.+.+.+|.+++.|.|+|+|.|..|.|   .++..+.+.+.+.+|..+|
T Consensus       141 v~y~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~~~P~~~p  212 (215)
T 1bqu_A          141 IQYRTKDASTWSQIPPE-DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP  212 (215)
T ss_dssp             EEEEETTCSSCEECCGG-GGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECCCHHHHHH
T ss_pred             EEEccCCCCCceEeccc-cccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccccccccCCcCCC
Confidence            9999865 344411100 013456789999999999999999999988864   4667778888776664333

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=2.5e-14  Score=93.85  Aligned_cols=102  Identities=23%  Similarity=0.369  Sum_probs=81.6

Q ss_pred             cCCCCCcceEEEEe--eccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          54 ETPEAPKNIRITEE--SSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        54 ~~P~~p~~~~~~~~--~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      .+|.+|.++.+...  ...++.|+|.+|...++.+.+|.|+|+...................+.+.|.+|.+++.|.|+|
T Consensus         7 ~P~~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   86 (114)
T 2ede_A            7 GPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRI   86 (114)
T ss_dssp             CCCSCCEEEEEEECSSCSSCEEEEEECCSSCSSCCSEEEEEEESCSSSCTTTSEEEEEETTCCEEEECSCCSSCEEEEEE
T ss_pred             CCCCCCcceEEEEccCCCCEEEEEECCCCCCCCceeEEEEEEEeCCCCCccceEEEEECCCceEEEEcCCCCCCEEEEEE
Confidence            35589999998887  7789999999997777789999999987543211111233455677889999999999999999


Q ss_pred             EEeCCCCCCCCCcceEEEecCCCC
Q psy6638         132 LAENPLGMSETGAELQASTLEEAP  155 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~~~~p  155 (273)
                      +|.|..|.|.++..+.++|....|
T Consensus        87 ~A~n~~G~g~~S~~~~~~T~~~~p  110 (114)
T 2ede_A           87 QARNSKGVGPLSDPILFRTLKVSG  110 (114)
T ss_dssp             EEECSSCBCCCCCCEEEECCCSSC
T ss_pred             EEEeCCcCcCCcccEEEEecCCCC
Confidence            999999999999999998876554

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.62  E-value=3.2e-14  Score=104.22  Aligned_cols=133  Identities=20%  Similarity=0.222  Sum_probs=103.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEE---EEEE-ec----CCCCCcceEEEEeeccEEEEEEeCCC-CCCccc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTI---QLLV-QE----TPEAPKNIRITEESSRSLQISWTAPY-SGNTAI   86 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~---~~~~-~~----~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~   86 (273)
                      ....+.|.+|.++..|.|+|.|.|..|.+..+.   .+.. ..    +|.+|.++.+.....+++.|+|.++. ..++.+
T Consensus        68 ~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~i  147 (214)
T 2ibg_A           68 KSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLI  147 (214)
T ss_dssp             EEEEEEECSCCTTCEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGC
T ss_pred             cceeEEecCCcCCCEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCCccCCCCc
Confidence            456889999999999999999999988765422   2222 12    44567888888888899999999985 466789


Q ss_pred             eEEEEEEEeCCC--CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEec
Q psy6638          87 TQYIIQYKSSEE--MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL  151 (273)
Q Consensus        87 ~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~  151 (273)
                      .+|.|+++..+.  .|.   .........+.+.+.+|.+++.|.|+|+|.|..|.|.++..+.++|.
T Consensus       148 ~~Y~v~~~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  211 (214)
T 2ibg_A          148 TGYYAYYRPSSSAGEYF---KATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ  211 (214)
T ss_dssp             CEEEEEEEETTCCSCCE---EEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEECC
T ss_pred             ceEEEEEEECCCCcceE---EeeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEec
Confidence            999999998653  443   11122234578999999999999999999999999999998888875

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=99.62  E-value=6.5e-15  Score=97.79  Aligned_cols=104  Identities=22%  Similarity=0.345  Sum_probs=74.5

Q ss_pred             CCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccce-eeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCC
Q psy6638         152 EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGV-LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL  230 (273)
Q Consensus       152 ~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~-i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  230 (273)
                      .+.|. +|.++.+..  .+.+ +.|+|++|..  .+|. |.+|.|+|+..+...+..   .+.... .......++|.+|
T Consensus         5 ~~~P~-~P~~~~~~~--~~~t-v~l~W~~P~~--~~G~pI~~Y~v~~~~~~~~~~~~---~~~~~~-~~~~~~~~~i~~L   74 (122)
T 2e3v_A            5 SSGPS-SPSIDQVEP--YSST-AQVQFDEPEA--TGGVPILKYKAEWRAVGEEVWHS---KWYDAK-EASMEGIVTIVGL   74 (122)
T ss_dssp             -CCCC-CCEEEEEEE--CSSC-EEEEEECCCC--C--CCEEEEEEEEEETTCCSCEE---EEEEHH-HHHTTTEEEECSC
T ss_pred             CcCCc-CCCccEEEe--cCCc-EEEEECCCCc--CCCCcceEEEEEEEECCCCCccc---ceeeee-ecCccceEEeCCC
Confidence            34564 488888877  6666 9999999965  3666 999999999876543210   001111 1123578999999


Q ss_pred             CccceEEEEEEEecCCCcCCCCccEEEEcCCC-CCc
Q psy6638         231 TPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG-DFL  265 (273)
Q Consensus       231 ~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~-~P~  265 (273)
                      +|++.|.|+|+|+|..|.|++|..+.++|.+. +|+
T Consensus        75 ~p~t~Y~~rV~A~n~~G~g~~S~~~~~~t~~~~~P~  110 (122)
T 2e3v_A           75 KPETTYAVRLAALNGKGLGEISAASEFKTQPVREPS  110 (122)
T ss_dssp             CTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCC
T ss_pred             CCCCEEEEEEEEEeCCccCCCcccccccccCCCCCC
Confidence            99999999999999999999999988866543 444

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.62  E-value=4.9e-15  Score=96.09  Aligned_cols=101  Identities=9%  Similarity=0.014  Sum_probs=73.6

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      +|.+|..+...   .+.+++.|.|.++.+  -+.+|.+|.|+|+..+...+       ......+.....++|.+|+|++
T Consensus         8 ~P~pP~~~~~~---~~~~sv~L~W~p~~d--ggsPI~~Y~I~yr~~~~~~w-------~~~~~~~~~~~~~~l~~L~p~t   75 (114)
T 2kbg_A            8 EPSPPSIHGQP---SSGKSFKLSITKQDD--GGAPILEYIVKYRSKDKEDQ-------WLEKKVQGNKDHIILEHLQWTM   75 (114)
T ss_dssp             CCCSCCEECCB---CSTTCEEEEECCCCC--SSSCCSEEEEEEEESSCCSC-------CEEEEEETTTCCEEECCCCTTC
T ss_pred             CccCCcccccc---cCCCEEEEEEECCCC--CCCcccEEEEEEEeCCCCCc-------EEeEEcCCCcCEEEEcCCCCCC
Confidence            44566555433   478999999998654  35689999999999754321       1111123345789999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEcCCCCCccccc
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIARTNEGDFLFLFC  269 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~~~~  269 (273)
                      .|.|+|.|.|..|.|++|. ..++|...+| +..|
T Consensus        76 ~Y~frV~A~N~~G~s~pS~-~~~~T~~~~~-~~~~  108 (114)
T 2kbg_A           76 GYEVQITAANRLGYSEPTV-YEFSMPPKPN-IIKD  108 (114)
T ss_dssp             CEEEEEEEECTTSCEEEEE-EEECCCCCCS-SCCC
T ss_pred             EEEEEEEEEeCCcCcCCcC-CEEEcCCCCc-eeec
Confidence            9999999999999999885 6788866544 4444

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.61  E-value=2.3e-15  Score=98.04  Aligned_cols=98  Identities=23%  Similarity=0.293  Sum_probs=72.6

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      |+.+|....+..  .+.+++.|.|.+|..+. +..|.+|.|+|+..+...       |..+.........+++.+|++++
T Consensus        10 ~p~~P~~P~v~~--v~~~sv~L~W~~P~~~g-g~~i~~Y~Ve~~~~~~~~-------w~~~~~~~~~~~~~~v~~L~p~t   79 (112)
T 1bpv_A           10 PIDPPGKPVPLN--ITRHTVTLKWAKPEYTG-GFKITSYIVEKRDLPNGR-------WLKANFSNILENEFTVSGLTEDA   79 (112)
T ss_dssp             CCCCCCCCEEEE--EETTEEEEECCCCSCCT-TCCCSCCEEEEEETTSCC-------CEECCCSCCCSSEEEECSCCSSC
T ss_pred             CCCCCCCCEEEE--eeCCEEEEEECCCCcCC-CCcccEEEEEEEECCCCc-------eEEeecccCccCEEEECCCCCCC
Confidence            444555555556  78899999999876532 446999999999875432       22222223345789999999999


Q ss_pred             eEEEEEEEecCCCc-CCCCccEEEEcCCC
Q psy6638         235 KYAIVVRGYNSVGK-GPFSEPFIARTNEG  262 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~-~~~s~~~~~~t~~~  262 (273)
                      .|.|+|+|.|..|. |++|......|..+
T Consensus        80 ~Y~frV~A~N~~G~~s~~S~~~~~~t~~~  108 (112)
T 1bpv_A           80 AYEFRVIAKNAAGAISPPSEPSDAITCRD  108 (112)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEEEECSCH
T ss_pred             EEEEEEEEEECCCCCCCCCCCCCCEEeCC
Confidence            99999999999997 99998877776543

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.61  E-value=1.7e-14  Score=118.27  Aligned_cols=133  Identities=20%  Similarity=0.232  Sum_probs=106.3

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCC---ceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGT---AEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~---~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      ..+.+.|.+|.+...|.|++.|.|..|.   ...+..+.+...|.+|..+.+...+.+++.|+|.+|...++.+.+|.|+
T Consensus       398 ~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~Ps~~~~~~~s~tSV~LsW~pP~~~ng~I~~Y~V~  477 (536)
T 3fl7_A          398 TRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVT  477 (536)
T ss_dssp             CSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCCCCEEEEEECCC-CCEEEEECCTTTTTTCSEEEEE
T ss_pred             ccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeecccCCCCCceeeccCCeEEEEEECCcCCCCcccEEEEE
Confidence            3568999999999999999999999887   3346667777888888888887778899999999987777889999999


Q ss_pred             EEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecC
Q psy6638          93 YKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE  152 (273)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~  152 (273)
                      |+..+...    .........+.+.+.+|.|++.|.|+|+|.|..|.|.+|..+.+.|..
T Consensus       478 y~~~~~~~----~~~~v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v~~~T~~  533 (536)
T 3fl7_A          478 YRKKGDSN----SYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLS  533 (536)
T ss_dssp             EEEC--CC----CCEEEEESSSEEECCSCCSSCEEEEEEEEECC---CEECCCEEEECCC
T ss_pred             EEECCCCc----eEEEEcCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCCEEEEeCC
Confidence            99865431    122344567889999999999999999999999999999989888743

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=5e-15  Score=98.81  Aligned_cols=115  Identities=24%  Similarity=0.267  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCceeEEEEEE---ecCCC-CCcceEEEEeeccEEEEEEeCCCC--CCccceEEEEEEEeCCCCCCCccceE
Q psy6638          34 SCLATNYHGTAEMTIQLLV---QETPE-APKNIRITEESSRSLQISWTAPYS--GNTAITQYIIQYKSSEEMWPTQPLKI  107 (273)
Q Consensus        34 ~~~a~n~~g~~~~~~~~~~---~~~P~-~p~~~~~~~~~~~~~~l~W~~~~~--~~~~~~~y~v~~~~~~~~~~~~~~~~  107 (273)
                      +|.|.|..|.+..+..+.+   ...|. +|.++++......++.|+|.+|..  .++.+.+|.|+|+.......    ..
T Consensus         3 ~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~----~~   78 (124)
T 2ed9_A            3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGE----ME   78 (124)
T ss_dssp             SCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCC----EE
T ss_pred             eEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcc----eE
Confidence            5677888887755433333   34565 788999988899999999999875  67789999999998654211    12


Q ss_pred             EecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecC
Q psy6638         108 IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE  152 (273)
Q Consensus       108 ~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~  152 (273)
                      ......+.+.|.+|.+++.|.|+|+|.|..|.|.++..+.++|.+
T Consensus        79 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~e  123 (124)
T 2ed9_A           79 TLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE  123 (124)
T ss_dssp             EECSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEEECCC
T ss_pred             EecCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEEECCC
Confidence            355677889999999999999999999999999999988888754

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.61  E-value=1.3e-15  Score=101.23  Aligned_cols=113  Identities=28%  Similarity=0.548  Sum_probs=89.3

Q ss_pred             CCCceeEEEEEEecCCCCCcce--EEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEe
Q psy6638          41 HGTAEMTIQLLVQETPEAPKNI--RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATL  118 (273)
Q Consensus        41 ~g~~~~~~~~~~~~~P~~p~~~--~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (273)
                      .|....+..+.+..+|.+|.++  .+.....+.+.|+|.++.++++++.+|.|+++..+..|....  .......+.+.+
T Consensus         3 ~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~~~v   80 (121)
T 1wf5_A            3 SGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLL--ASVDPKATSVTV   80 (121)
T ss_dssp             CCCCCCCCCSSCCCCCCCCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTTCCCEEEE--SSCCTTCCEEEE
T ss_pred             CCcccceEEEEEeeCCccCCCcceeeEeccCCEEEEEEcCCCCCCCcceEEEEEEEcCCCCceEeE--cccCCCccEEEE
Confidence            4666667777788899999999  777778899999999987677789999999998766664210  123346678999


Q ss_pred             cCCCCCCeEEEEEEEeCCCCCCCCCcce-EEEecCCCC
Q psy6638         119 QPLLPATQYQVRLLAENPLGMSETGAEL-QASTLEEAP  155 (273)
Q Consensus       119 ~~l~~~~~y~~~v~a~~~~g~~~~s~~~-~~~~~~~~p  155 (273)
                      .+|.|++.|.|+|+|.|..|.+.++... .+.+....|
T Consensus        81 ~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~~t~~~~P  118 (121)
T 1wf5_A           81 KGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGP  118 (121)
T ss_dssp             ESCCTTCEEEEEEEEEESSCEEEECCCCSCEECCCCSS
T ss_pred             CCcCCCCEEEEEEEEEcCCccCCCcCCcceeEcCCCCC
Confidence            9999999999999999999988888765 466655444

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=3.2e-14  Score=92.50  Aligned_cols=99  Identities=25%  Similarity=0.386  Sum_probs=80.7

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      +.+|.+|.++++.....+++.|+|.+|...++.+.+|.|+|+..+ .... ..  .......+.+.|.+|.|++.|.|+|
T Consensus         5 ~~~P~~p~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~-~~--~~~~~~~~~~~i~~L~p~t~Y~~~V   81 (109)
T 2e7h_A            5 SSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPS-SV--RFLKTSENRAELRGLKRGASYLVQV   81 (109)
T ss_dssp             CCSSCCCCCCEEEEEETTEEEEECCCCCCSSSCCCEEEEEEEETTCCSTT-TS--EEEEESSSEEEEESCCTTSCEEEEE
T ss_pred             CCCCCCCCccEEEecCCCEEEEEeCCCCCCCCcEeEEEEEEEECCCCCCc-ee--EEEccCCCEEEECCCCCCCeEEEEE
Confidence            357888999999999999999999999777778999999999865 2211 11  1223355789999999999999999


Q ss_pred             EEeCCCCCCCCCcceEEEecCCC
Q psy6638         132 LAENPLGMSETGAELQASTLEEA  154 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~~~~  154 (273)
                      +|.|..|.|.++..+.++|....
T Consensus        82 ~A~n~~G~g~~S~~~~~~T~~~~  104 (109)
T 2e7h_A           82 RARSEAGYGPFGQEHHSQTQLDS  104 (109)
T ss_dssp             EEECSSCBCCCCSCEECCCCCCS
T ss_pred             EEEeCCccCCCCCCEEEEcCCCC
Confidence            99999999999999988886543

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=9.8e-15  Score=94.13  Aligned_cols=91  Identities=18%  Similarity=0.149  Sum_probs=72.6

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .|..+|.++.+..  .+.+++.|+|+++.     +.+.+|.|+|+..++...       ....+ +...++++|.+|.|+
T Consensus         6 ~p~~pP~~l~~~~--vt~tsi~vsW~pp~-----~~i~~Y~I~y~~~~~~~~-------~~~~v-~~~~t~~~l~~L~p~   70 (108)
T 2ee3_A            6 SGLAPPRHLGFSD--VSHDAARVFWEGAP-----RPVRLVRVTYVSSEGGHS-------GQTEA-PGNATSAMLGPLSSS   70 (108)
T ss_dssp             CCCCCSSCEEEES--CCSSCEEEEESCCS-----SCCSEEEEEEEETTTCCB-------CCEEE-ETTCCEEEECSCCSS
T ss_pred             cCCCCCceEEEEE--ccCCeEEEEeeCCC-----CCccEEEEEEEeCCCCce-------eEEEc-CCCcCEEEcCCCCCC
Confidence            4556888999998  99999999999874     578999999998754321       12222 233578999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEcC
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIARTN  260 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t~  260 (273)
                      +.|.|+|.|+|..|.|+++. ..+.|.
T Consensus        71 T~Y~v~V~A~~~~g~s~p~~-~~~~T~   96 (108)
T 2ee3_A           71 TTYTVRVTCLYPGGGSSTLT-GRVTTK   96 (108)
T ss_dssp             CEEEEEEEEECTTSCEEEEE-EEEECC
T ss_pred             CEEEEEEEEEeCCCcCCCcc-CEEEeC
Confidence            99999999999999998774 468887

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.60  E-value=2.4e-15  Score=96.64  Aligned_cols=97  Identities=18%  Similarity=0.298  Sum_probs=80.1

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      .+|.+|.++.+.. ...++.|+|.+|..+++++.+|.|+++.....|....  .......+.+.+.+|.+++.|.|||.|
T Consensus         6 ep~~pP~~l~v~~-~~~sv~L~W~pP~~~~~~I~gY~vey~~~~~~W~~~~--~~~~~~~t~~~v~~L~pg~~Y~FRV~A   82 (108)
T 1v5j_A            6 SGLSPPRGLVAVR-TPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLD--PAVAGTETELLVPGLIKDVLYEFRLVA   82 (108)
T ss_dssp             CCCCCCEEEEEEE-CSSSEEEEEECCSCCSSCCCBEEEEEEETTCCCEEEE--EEECSSCCEEECCCCCTTSCEECCBEE
T ss_pred             CCCCCCcceEEEE-eCCEEEEEECCCCCCCCCCcEEEEEEEeCCCCcEEee--eecCCCcCEEEeCCCCCCCEEEEEEEE
Confidence            5678999988865 5678999999998888899999999999666676222  124567789999999999999999999


Q ss_pred             eCCCCCCCCCcceEEEecCC
Q psy6638         134 ENPLGMSETGAELQASTLEE  153 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~~~  153 (273)
                      .|..|.|.++..+.+.|...
T Consensus        83 ~n~~G~s~pS~~~~v~T~~~  102 (108)
T 1v5j_A           83 FAGSFVSDPSNTANVSTSGL  102 (108)
T ss_dssp             EETTEEEEECSCCCCCCSSC
T ss_pred             EcCCCCcCCCCCEEEEeCCc
Confidence            99999999888887777543

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.59  E-value=1.1e-13  Score=98.99  Aligned_cols=127  Identities=20%  Similarity=0.271  Sum_probs=99.8

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEe
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS   95 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~   95 (273)
                      ..+.+.|.+|.++..|.|++.|.|..|.+. ...+.....|.+|.++.+.....+++.|+|.++.   +.+.+|.|+|+.
T Consensus        56 ~~~~~~i~~L~p~t~Y~~~V~a~~~~~~s~-~~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~  131 (186)
T 1qr4_A           56 DSTSFILRGLDAGTEYTISLVAEKGRHKSK-PTTIKGSTVVGSPKGISFSDITENSATVSWTPPR---SRVDSYRVSYVP  131 (186)
T ss_dssp             TCSEEEEESCCSSCEEEEEEEEESSSCBCC-CEEEEEECCCCCCSCEEEESCCSSCEEEEECCCS---SCCSEEEEEEEE
T ss_pred             CCCEEEECCCCCCCEEEEEEEEEcCCccCC-CEEEEEECCCCCCCccEEEEeCCCEEEEEEECCC---CcccEEEEEEEe
Confidence            456789999999999999999999755443 4455667789999999998889999999999874   468899999988


Q ss_pred             CCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEe
Q psy6638          96 SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST  150 (273)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~  150 (273)
                      .+....   .........+.+.+.+|.|++.|.|+|+|.+..|.+.+.. ..+.|
T Consensus       132 ~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~-~~~~T  182 (186)
T 1qr4_A          132 ITGGTP---NVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPIS-GILKT  182 (186)
T ss_dssp             TTCCCC---EEEEEETTCCEEEECSCCSSCEEEEEEEEEETTEECCCEE-EEEEC
T ss_pred             CCCCCc---eEEEcCCCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCEE-EEEEe
Confidence            654211   2344556778999999999999999999999888765432 34444

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=6.8e-14  Score=90.52  Aligned_cols=101  Identities=23%  Similarity=0.389  Sum_probs=83.2

Q ss_pred             EecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC--CCCCccceEEecCCccEEEecCCCCCCeEEE
Q psy6638          52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE--MWPTQPLKIIVPGSQTSATLQPLLPATQYQV  129 (273)
Q Consensus        52 ~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~  129 (273)
                      ...+|.+|.++.+.......+.|+|.++  .++.+.+|.|+++....  .|...     .....+.+.+.+|.+++.|.|
T Consensus         4 ~~~~P~~P~~~~~~~~~~~sv~l~W~~~--~~~~i~~Y~v~~~~~~~~~~~~~~-----~~~~~~~~~i~~L~p~t~Y~~   76 (106)
T 2dju_A            4 GSSGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQEV-----DGVATTRYSIGGLSPFSEYAF   76 (106)
T ss_dssp             CCCSCCCCEEEEEEEEETTEEEEEEECC--CSSCCSEEEEEEEETTCCSCCCCB-----CCCCSSEEEEESCCTTCEEEE
T ss_pred             CCcCCcCCCCcEEEeccCCEEEEEEcCC--CCCCceEEEEEEEECCCCCCeEEc-----cCCCccEEEEeCCCCCcEEEE
Confidence            3567899999999988999999999987  34678999999988653  45421     123567899999999999999


Q ss_pred             EEEEeCCCCCCCCCcceEEEecCCCCCCCC
Q psy6638         130 RLLAENPLGMSETGAELQASTLEEAPNGAP  159 (273)
Q Consensus       130 ~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p  159 (273)
                      +|+|.|..|.+.++..+.+.+....|..||
T Consensus        77 ~V~A~n~~G~~~~S~~~~~~T~~~~P~~Pp  106 (106)
T 2dju_A           77 RVLAVNSIGRGPPSEAVRARTGEQSGPSSG  106 (106)
T ss_dssp             EEEEECSSCBCCCCCCEEEECCCSSCCCCC
T ss_pred             EEEEEeCCccCCCcccEEeEcCCCCCCCCC
Confidence            999999999999999999999888776554

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=2.7e-14  Score=92.40  Aligned_cols=98  Identities=21%  Similarity=0.291  Sum_probs=81.9

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCC-CCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM-WPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      ...|.+|.++++.....+++.|+|.++...++.+.+|.|+|+..... |.      ......+.+.|.+|.+++.|.|+|
T Consensus         5 ~~~P~~P~~l~~~~~~~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~------~~~~~~~~~~i~~L~p~t~Y~~~V   78 (106)
T 2ed8_A            5 SSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQ------NIEVDGLSYKLEGLKKFTEYSLRF   78 (106)
T ss_dssp             CCCCCCCEEEEEECSSTTEEEEEEECCSSCSSCCCEEEEEEEETTTCCEE------EEEECSSCEEEESCCTTCEEEEEE
T ss_pred             CCCCcCCceeEEEecCCCEEEEEECCCCCCCCCeeEEEEEEEECCCCceE------EEeCCccEEEECCCCCCCEEEEEE
Confidence            46788999999988899999999999876667899999999886542 21      222346789999999999999999


Q ss_pred             EEeCCCCCCCCCcceEEEecCCCCC
Q psy6638         132 LAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      +|.|..|.+.++..+.++|....|+
T Consensus        79 ~A~n~~G~g~~S~~~~~~T~~~~P~  103 (106)
T 2ed8_A           79 LAYNRYGPGVSTDDITVVTLSDSGP  103 (106)
T ss_dssp             EEECSSCEEEECCCEEEECCCCCCC
T ss_pred             EEEeCCccCCCcCCEEEEcCCCCCC
Confidence            9999999999999999999877664

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.59  E-value=2.8e-14  Score=92.67  Aligned_cols=98  Identities=21%  Similarity=0.359  Sum_probs=81.9

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCC-CCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM-WPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      ..+|.+|.++++......++.|+|.+|...++.+.+|.|+|+..... |.    ........+.+.|.+|.|++.|.|+|
T Consensus         5 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~----~~~~~~~~~~~~l~~L~p~t~Y~~~V   80 (108)
T 2djs_A            5 SSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFN----SSMARSQTNTARIDGLRPGMVYVVQV   80 (108)
T ss_dssp             CCCCCCCSCCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSCSTT----CEEEEESSSEEEEESCCTTCEEEEEE
T ss_pred             CCCCCCCcceEEEecCCCEEEEEECCCCCCCCeEEEEEEEEEECCCCCcc----eeEEecCccEEEEcCCCCCCEEEEEE
Confidence            45788999999999999999999999977777899999999986542 22    12334567889999999999999999


Q ss_pred             EEeCCCCCCCCCcceEEEecCCC
Q psy6638         132 LAENPLGMSETGAELQASTLEEA  154 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~~~~  154 (273)
                      +|.|..|.|.++..+.+.|....
T Consensus        81 ~A~n~~G~g~~S~~~~~~T~~~~  103 (108)
T 2djs_A           81 RARTVAGYGKFSGKMCFQTLTDS  103 (108)
T ss_dssp             EEEESSCEEEECCCEEEECCCSS
T ss_pred             EEEeCCEECCCCCCEEEEeCCCC
Confidence            99999999999998999887654

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.59  E-value=5.1e-14  Score=102.48  Aligned_cols=132  Identities=20%  Similarity=0.249  Sum_probs=100.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeE---EEEEE-ecCC-CCCcceEEEEeeccEEEEEEeCCC--CCCccceEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMT---IQLLV-QETP-EAPKNIRITEESSRSLQISWTAPY--SGNTAITQYI   90 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~---~~~~~-~~~P-~~p~~~~~~~~~~~~~~l~W~~~~--~~~~~~~~y~   90 (273)
                      +.+.+ +|.+...|.|++.|.|..|.+..+   ..+.. ...| .+|.++.+.....+.+.|+|+++.  ..++.+.+|.
T Consensus        63 ~~~~~-~L~p~t~Y~~~V~A~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~  141 (205)
T 1cfb_A           63 SSFVV-QMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYY  141 (205)
T ss_dssp             SEEEE-ECCSSEEEEEEEEEEETTEECCCCCCCCCEEECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEE
T ss_pred             eEEEE-eCCCCCEEEEEEEEEECCccCCCCCCceeEEcCCcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEE
Confidence            35556 999999999999999998866543   22222 2334 578888888888899999999987  5677899999


Q ss_pred             EEEEeCCCC--CCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCC-CcceEEEecCC
Q psy6638          91 IQYKSSEEM--WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSET-GAELQASTLEE  153 (273)
Q Consensus        91 v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~-s~~~~~~~~~~  153 (273)
                      |+|+..+..  |.   .........+.+.+.+|.+++.|.|+|+|.|..|.|.+ +..+.+.+.++
T Consensus       142 v~~~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~~T~e~  204 (205)
T 1cfb_A          142 VSWKRDIPAAAWE---NNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGED  204 (205)
T ss_dssp             EEEEESSTTCCCE---EEEECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEEESSSC
T ss_pred             EEEEECCCCCCcE---EEEecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEEecCCC
Confidence            999986542  33   11122225678999999999999999999999999984 66777776543

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.59  E-value=1.5e-14  Score=93.51  Aligned_cols=95  Identities=21%  Similarity=0.293  Sum_probs=73.4

Q ss_pred             ecCCCCCCCCeeEEecCCccCCceEEEEE--eCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEc
Q psy6638         150 TLEEAPNGAPREVTSDPGVVDPTELLIKW--KAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRI  227 (273)
Q Consensus       150 ~~~~~p~~~p~~~~~~~~~~~~~~i~l~W--~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  227 (273)
                      |...+| .+|.++++..  .+.+++.|+|  .+|..  .+|. .+|.|+|+.....         .......   ..++|
T Consensus         5 T~~~~P-~~p~~l~~~~--~~~~sv~l~W~~~~P~~--~ng~-~~Y~v~y~~~~~~---------~~~~~~~---~~~~i   66 (107)
T 1x5a_A            5 SSGAES-LSGLSLKLVK--KEPRQLELTWAGSRPRN--PGGN-LSYELHVLNQDEE---------WHQMVLE---PRVLL   66 (107)
T ss_dssp             TTTCCC-CCSCCCCEEE--EETTEEEEECCCCCSSC--CSSC-CEEEEEEECSSCE---------EEEEESS---SEEEE
T ss_pred             CCCCCC-CCCCceEEEe--cCCCEEEEEECCCCCCC--CCCc-eEEEEEEEeCCCC---------ceEEEec---ceEEE
Confidence            334455 4666888877  8899999999  77765  5777 9999999876211         1111122   23999


Q ss_pred             CCCCccceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         228 PGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       228 ~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      .+|+|++.|.|+|+|.|..|.|++|..+.++|.+.
T Consensus        67 ~~L~p~t~Y~f~V~A~~~~G~g~~S~~~~~~T~~~  101 (107)
T 1x5a_A           67 TKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPP  101 (107)
T ss_dssp             ESCCSSCEEEEEEEEECSSSCCCCCCCEEEECCCC
T ss_pred             CCCCCCCEEEEEEEEECCCccCCCCCCEEEEECCC
Confidence            99999999999999999999999999999999864

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.59  E-value=8.6e-14  Score=108.06  Aligned_cols=192  Identities=9%  Similarity=0.023  Sum_probs=117.4

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCC-CccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSG-NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~-~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      ..||.++++.......+.|+|++|... ++...+|.+.+..   .|..    ...   ...+.+.++.++..|.|+|+|.
T Consensus         4 ~~pP~nl~~~~~~~~~v~l~W~pP~~~~~~~~~~Y~v~~~~---~~~~----~~~---~~~~~~~~~~~~~~y~~~V~a~   73 (314)
T 3bpo_C            4 QPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGD---KQDK----KIA---PETRRSIEVPLNERICLQVGSQ   73 (314)
T ss_dssp             CCCCEEEEEEEETTTEEEEEEECCSSCCCSSCCCEEECCC-----CCC----EEE---SSSEEEEECCCSSCEEEEEEEC
T ss_pred             CCCCcceEEEeCCceEEEEEEcCCCCCCCCceEEEEEEecc---cCce----Eec---cccEEEEEEcCCCcEEEEEEEE
Confidence            468999999888888999999997643 4566788887743   2321    111   1223456688999999999996


Q ss_pred             C-CCCCCCCCcceEEE--ecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeee
Q psy6638         135 N-PLGMSETGAELQAS--TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYT  211 (273)
Q Consensus       135 ~-~~g~~~~s~~~~~~--~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~  211 (273)
                      . ..|.+.++.++...  +....|+.+|.++.+..  .+...+.+.|+++.+   .+.+.+|.|+|+..+...... ...
T Consensus        74 ~~~~~~g~~s~~~~~~~~~~~~~pp~~P~~l~c~~--~~~~~~~c~W~~~~~---~~~~~~Y~l~y~~~~~~~~~~-C~~  147 (314)
T 3bpo_C           74 CSTNESEKPSILVEKCISPPEGDPESAVTELQCIW--HNLSYMKCSWLPGRN---TSPDTNYTLYYWHRSLEKIHQ-CEN  147 (314)
T ss_dssp             C---------CCEEEEECCCCC-CCSSCEEEEEEE--ETTTEEEEEEECCC------CCCCEEEEEEESSCSSCEE-CCC
T ss_pred             ecCCCCCCCCcCeeeeeecCCCCCCCCCEeceEEE--CCCCeEEEEECCCCC---CCCCccEEEEEEeCCCCcccc-CcC
Confidence            4 55566666666533  34556777899999877  788899999999976   345789999998764321110 000


Q ss_pred             eeeEEecCCcccEEEcCCCC----ccceEEEEEEEecCCCcCCCCccEEEEc----CCCCCcccc
Q psy6638         212 LKSVELDNQYEGELRIPGLT----PYTKYAIVVRGYNSVGKGPFSEPFIART----NEGDFLFLF  268 (273)
Q Consensus       212 ~~~~~~~~~~~~~~~i~~L~----p~~~Y~~~v~a~n~~g~~~~s~~~~~~t----~~~~P~~~~  268 (273)
                         .... .....+.+..+.    ..+.|.|+|.|.|..|.+..+ .+.|.+    .+++|..|.
T Consensus       148 ---~~~~-~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~-~~~~~~~~~v~P~pP~~l~  207 (314)
T 3bpo_C          148 ---IFRE-GQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPS-FNIVPLTSRVKPDPPHIKN  207 (314)
T ss_dssp             ---EEEE-TTEEEEEEECCC--------CCEEEEEEETTSCSCCE-EEEECSSSSEECCCCEEEE
T ss_pred             ---eecC-CCeEEEEECCCCccccceeEEEEEEEEEcCCCceecc-cEEEehhheEeeCCCCEEE
Confidence               0111 123456666555    478999999999998888544 355542    245565544

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=99.58  E-value=2.2e-14  Score=92.10  Aligned_cols=92  Identities=25%  Similarity=0.383  Sum_probs=71.6

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      .+.+|.++++..  .+.+++.|+|++|..  .++.+.+|.|+|+..+....      ..... ......+++|.+|+|++
T Consensus         7 ~~~~P~~l~v~~--~t~~Sv~lsW~~p~~--~~g~i~~Y~v~y~~~~~~~~------~~~~~-v~~~~ts~~l~~L~p~t   75 (103)
T 3t04_D            7 VSSVPTKLEVVD--ATPTSLKISWDAYYS--SWQNVKYYRITYGETGGDSP------VQEFT-VPGYYSTATISGLKPGV   75 (103)
T ss_dssp             CCCCCCSCEEEE--EETTEEEEECTTTTT--TSCCCCEEEEEEEETTCSSC------CEEEE-EETTCCEEEECSCCTTC
T ss_pred             cCCCCceeEEEe--cCCCEEEEEccCCCC--CCCccceEEEEEEECCCCCc------cEEEE-cCCCcCEEEeCCCCCCC
Confidence            345788999888  899999999999986  47889999999998753211      11122 22336799999999999


Q ss_pred             eEEEEEEEecC--CCcCCCCccEEEE
Q psy6638         235 KYAIVVRGYNS--VGKGPFSEPFIAR  258 (273)
Q Consensus       235 ~Y~~~v~a~n~--~g~~~~s~~~~~~  258 (273)
                      .|.|+|+|.|.  .|.|+ |.++.+.
T Consensus        76 ~Y~~~V~A~~~~~~G~~~-S~p~~~~  100 (103)
T 3t04_D           76 DYTITVYAYDTFFPGYEP-NSPISIN  100 (103)
T ss_dssp             CEEEEEEEESCCCTTCCC-SCCEEEE
T ss_pred             EEEEEEEEEeCCCCCCCC-CCCEEEe
Confidence            99999999999  99887 7666543

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=6.3e-15  Score=97.26  Aligned_cols=101  Identities=20%  Similarity=0.178  Sum_probs=78.0

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .++.+|.++.+..  .+.+++.|.|+++.+  .++.+.+|.|+|+..+...      .+..+.. ......+++.+|.++
T Consensus        14 ~~P~~P~~~~~~~--~~~~sv~l~W~~p~~--~~~~i~~Y~v~~~~~~~~~------~~~~~~~-~~~~~~~~i~~L~p~   82 (117)
T 1uem_A           14 DLPGPPSKPQVTD--VTKNSVTLSWQPGTP--GTLPASAYIIEAFSQSVSN------SWQTVAN-HVKTTLYTVRGLRPN   82 (117)
T ss_dssp             CSCBCCCCCEEEE--ECSSCEEEECCCCBC--SSSCCCEEEEEEEETTTEE------EEEEEEE-EECSSEEEECSCCTT
T ss_pred             CCccCCCCCEEEE--ecCCEEEEEEeCCCC--CCcCceEEEEEEEECCCCC------ceeEccc-ccCcCEEEECCCCCC
Confidence            3445777888877  788999999999874  3678999999998864211      1222211 123578999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEE-EEcCCCCCc
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFI-ARTNEGDFL  265 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~-~~t~~~~P~  265 (273)
                      +.|.|+|+|.|..|.|++|.... ++|.+.+|.
T Consensus        83 t~Y~frV~A~n~~G~s~~S~~~~~v~t~~~~P~  115 (117)
T 1uem_A           83 TIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPS  115 (117)
T ss_dssp             CEEEEEEEEEETTEEEEECCCCCCEECCCSSCC
T ss_pred             CEEEEEEEEECCCccCCCcCCCccEEccCCCCC
Confidence            99999999999999999988776 888887775

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=1.5e-14  Score=96.43  Aligned_cols=103  Identities=24%  Similarity=0.425  Sum_probs=81.4

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC----CCCCCCccceEEecCCccEEEecCCCCCCeEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS----EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQ  128 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~  128 (273)
                      ..+|.+|.++.+.....+++.|+|.++.++++++.+|.|+++..    ...|.... ........+.+.+.+|.+++.|.
T Consensus        15 ~~~P~~P~~l~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~v~~L~p~t~Y~   93 (124)
T 1wis_A           15 PELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIH-QLSNEPDARSMEVPDLNPFTCYS   93 (124)
T ss_dssp             CCCCCCCEEEEEESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEE-EEESCTTCSEEEECSCCTTSEEC
T ss_pred             CCCCccCCCCEEEEecCCEEEEEEECCCCCCCcccEEEEEEEECCCCCCCCCeEee-eEccCCCceEEEeCCCCCCCEEE
Confidence            56889999999988899999999999887788899999999873    34554111 11123567889999999999999


Q ss_pred             EEEEEeCCCCCCCCCcce-EEEecCCCCC
Q psy6638         129 VRLLAENPLGMSETGAEL-QASTLEEAPN  156 (273)
Q Consensus       129 ~~v~a~~~~g~~~~s~~~-~~~~~~~~p~  156 (273)
                      |||+|.|..|.+.++... .+++....|.
T Consensus        94 frV~A~N~~G~s~~S~~~~~~~T~~~~P~  122 (124)
T 1wis_A           94 FRMRQVNIVGTSPPSQPSRKIQTLQSGPS  122 (124)
T ss_dssp             CCCEEECSSCBCCCCCCCCCEECCCSSCC
T ss_pred             EEEEEEECCccCCCcCCccceEcCCCCCC
Confidence            999999999999988764 5677655553

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.58  E-value=4.9e-14  Score=101.77  Aligned_cols=125  Identities=22%  Similarity=0.335  Sum_probs=99.3

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEE---EEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCC-ccceEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTI---QLLVQETPEAPKNIRITEESSRSLQISWTAPYSGN-TAITQYII   91 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~---~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~-~~~~~y~v   91 (273)
                      ..+.+.|.+|.++..|.|+|.|.|..|.+..+.   ......+|.+|.++.+.....+.+.|+|.++...+ +.+.+|.|
T Consensus        60 ~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v  139 (197)
T 3lpw_A           60 HKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIV  139 (197)
T ss_dssp             CSSEEEECCCCTTCEEEEEEEEEETTEECCCEECSSCEESCCCCCCCSCEEEEEECSSCEEEEECCCSCCTTSCCCEEEE
T ss_pred             CccEEEEcCCCCCCEEEEEEEEEcCccccCCCCCccceecCCCCCCCcccEEEeccCCeEEEEecCCCcCCCCcccEEEE
Confidence            345788999999999999999999888765432   23345678899999988888999999999876544 47899999


Q ss_pred             EEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcc
Q psy6638          92 QYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAE  145 (273)
Q Consensus        92 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~  145 (273)
                      +++..+. .|.     .......+.+.+.+|.+++.|.|+|+|.|..|.|.++..
T Consensus       140 ~~~~~~~~~~~-----~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~  189 (197)
T 3lpw_A          140 EMQTKGSDKWA-----TCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQL  189 (197)
T ss_dssp             EEEETTCSCCE-----EEEEESSSEEEECCCCTTCEEEEEEEEEETTEECCCEEC
T ss_pred             EEEeCCCCceE-----EeecccccEEEeCCcCCCCEEEEEEEEEeCCccCCCccC
Confidence            9998654 332     223346778999999999999999999999998876654

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=99.58  E-value=1.6e-14  Score=95.91  Aligned_cols=108  Identities=24%  Similarity=0.331  Sum_probs=78.0

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCcc-ceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTA-ITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~-~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ...|.+|.++.+.....+ +.|+|++|...++. +.+|.|+|+..+. .|.............+.+.+.+|.+++.|.|+
T Consensus         5 ~~~P~~P~~~~~~~~~~t-v~l~W~~P~~~~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   83 (122)
T 2e3v_A            5 SSGPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR   83 (122)
T ss_dssp             -CCCCCCEEEEEEECSSC-EEEEEECCCCC--CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCTTCEEEEE
T ss_pred             CcCCcCCCccEEEecCCc-EEEEECCCCcCCCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCCCCEEEEE
Confidence            457888999888887777 99999998655554 9999999998653 55211111111235678999999999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEecCCCCCCCCee
Q psy6638         131 LLAENPLGMSETGAELQASTLEEAPNGAPRE  161 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~  161 (273)
                      |+|.|..|.|.++..+.+++.+..++.+|..
T Consensus        84 V~A~n~~G~g~~S~~~~~~t~~~~~P~~P~~  114 (122)
T 2e3v_A           84 LAALNGKGLGEISAASEFKTQPVREPSAPKL  114 (122)
T ss_dssp             EEEEETTEECCCCCCEEEECCCCCCCC----
T ss_pred             EEEEeCCccCCCcccccccccCCCCCCCCee
Confidence            9999999999999988886665555556643

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.58  E-value=8.4e-14  Score=91.30  Aligned_cols=102  Identities=19%  Similarity=0.239  Sum_probs=80.6

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCC--CCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPY--SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~--~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      .+|.+|.++.+...+.+++.|+|+++.  ..++.+.+|.|+|+...................+.+.|.+|.|++.|.|+|
T Consensus         7 ~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   86 (114)
T 1x4y_A            7 GPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKM   86 (114)
T ss_dssp             SCCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEE
T ss_pred             CCCCCCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEecCCcEeEEEcCCCCCCCEEEEEE
Confidence            456789999888889999999999885  367789999999987543200011122344556789999999999999999


Q ss_pred             EEeCCCCCCCCCcceEEEecCCCC
Q psy6638         132 LAENPLGMSETGAELQASTLEEAP  155 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~~~~p  155 (273)
                      +|.|..|.|.++..+.++|....+
T Consensus        87 ~A~n~~G~g~~S~~v~~~T~~~~~  110 (114)
T 1x4y_A           87 QCFNEGGESEFSNVMICETKARSG  110 (114)
T ss_dssp             EEECTTCCCCCCCCEEEECCCCCC
T ss_pred             EEEcCCccCCCcCCEEEEeCCCCC
Confidence            999999999999999999876644

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=8.6e-15  Score=97.86  Aligned_cols=94  Identities=23%  Similarity=0.274  Sum_probs=72.0

Q ss_pred             eEEecCCccCCceEEEEEeCCCCCCcc------ce--eeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCc
Q psy6638         161 EVTSDPGVVDPTELLIKWKAPPRESWN------GV--LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP  232 (273)
Q Consensus       161 ~~~~~~~~~~~~~i~l~W~~~~~~~~~------~~--i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  232 (273)
                      .+.+..  .+.+++.|+|.+|.... +      +.  +..|.|+|+..+...      .+...  .....+.++|.+|+|
T Consensus        23 ~p~v~~--i~s~S~~LsW~~P~~~~-~g~~~~~g~~~i~~Yev~~~~k~~~~------~~~~~--~~g~~ts~~v~~L~P   91 (137)
T 1wk0_A           23 KPVASD--IQARTVVLTWSPPSSLI-NGETDESSVPELYGYEVLISSTGKDG------KYKSV--YVGEETNITLNDLKP   91 (137)
T ss_dssp             CCEEES--CCSSCEEEECCCCCCCS-TTSSCSSCSCSCCEEEEEECSSCTTS------CCEEE--EEESCSEEEECSCCT
T ss_pred             CcEEEE--EccCEEEEEECCCCCcc-CccccccccCccEEEEEEEEecCCCC------ceEEE--EecCccEEEEcCCCC
Confidence            444556  78999999999987631 2      23  589999997764322      11111  123357999999999


Q ss_pred             cceEEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         233 YTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       233 ~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                      ++.|.|+|+|.|..|.|++|..+.|+|.+.+|.
T Consensus        92 ~T~Y~~rV~A~n~~G~G~~S~~~~f~T~~~~P~  124 (137)
T 1wk0_A           92 AMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD  124 (137)
T ss_dssp             TCEECEEEEEEETTEECCCCCCCCEECCCSSSC
T ss_pred             CCEEEEEEEEEeCCCcCCCCCCEEEECCCCCCC
Confidence            999999999999999999999999999977764

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=2.8e-14  Score=94.56  Aligned_cols=103  Identities=24%  Similarity=0.385  Sum_probs=83.7

Q ss_pred             EecCCCCCcceEEEEeeccEEEEEEeCCC-CCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          52 VQETPEAPKNIRITEESSRSLQISWTAPY-SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        52 ~~~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ...+|.+|.++.+......++.|.|.+|. ..++.+.+|.|+|+.....+..  .........+.+.+.+|.|++.|.|+
T Consensus        14 ~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~g~i~~Y~v~~~~~~~~~~~--~~~~~~~~~~~~~i~~L~p~t~Y~~~   91 (120)
T 1x5f_A           14 TGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARER--VENTSHPGEMQVTIQNLMPATVYIFR   91 (120)
T ss_dssp             CCCCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCE--EEECSSTTCSEEEECSCCTTCEEEEE
T ss_pred             CCCCCCCCCCcEEEecCCCEEEEEECCCCCCCCCcEEEEEEEEEECCCCCce--EEEeccCCccEEEeCCCCCCCEEEEE
Confidence            35688999999999989999999999987 6677899999999987543221  11223345788999999999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEecCCCCC
Q psy6638         131 LLAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      |+|.|..|.+.++..+.+++....||
T Consensus        92 V~A~n~~G~g~~S~~~~~~T~~~~pP  117 (120)
T 1x5f_A           92 VMAQNKHGSGESSAPLRVETQPESGP  117 (120)
T ss_dssp             EEEECSSCEEEECCCEEEECCCCCCS
T ss_pred             EEEECCCccCCCCCCEEEEeCCCCCC
Confidence            99999999999999899998765553

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1

Probab=99.58  E-value=4.4e-13  Score=99.77  Aligned_cols=187  Identities=13%  Similarity=0.154  Sum_probs=117.1

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC---CCCCCccceEEecCCccEEEe--cCCCCCCeEEEEEE
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE---EMWPTQPLKIIVPGSQTSATL--QPLLPATQYQVRLL  132 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~y~~~v~  132 (273)
                      +|.++.........+.|+|.+...  .....|.+.+.-.+   ..|..........+....+.+  ..+.....|.++|+
T Consensus        39 ~~~nl~C~~~~~~~l~CtW~~g~~--~~~t~y~l~y~~~~~~~~~~~~C~~y~~~~g~~~~C~f~~~~~~~~~~y~i~V~  116 (247)
T 2erj_C           39 PLPEVQCFVFNVEYMNCTWQSSSE--PQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQ  116 (247)
T ss_dssp             CCCCCEEEEETTSEEEEECCTTSS--SSCCCCEEEEEESSSSCCCCEECCSEEESSSSEEEEEEEGGGCCTTSCEEEEEE
T ss_pred             CCCCCEEEECCCCEEEEEEcCCCC--CCCeeEEEEEEECCCCCCcceeCCCccccCCcceEEEeCCCCcceeeEEEEEEE
Confidence            677888888788899999997642  12356777775432   222211111112222234444  34445667888875


Q ss_pred             EeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeee
Q psy6638         133 AENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTL  212 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~  212 (273)
                      +  ..|.. .+....+.....+.+.||.++++..  .....+.|+|++|..    ...+.|+|+|+..++..+       
T Consensus       117 ~--~~g~~-~s~~~~~~~~~iVkP~PP~nl~v~~--~~~~~l~l~W~~P~~----~~~L~Yevry~~~~~~~W-------  180 (247)
T 2erj_C          117 D--PREPR-RQATQMLKLQNLVIPWAPENLTLHK--LSESQLELNWNNRFL----NHCLEHLVQYRTDWDHSW-------  180 (247)
T ss_dssp             C--SSCTT-CEEEEEECGGGSEECCCCEEEEEEE--SSSSCEEEEEECSSC----CTTEEEEEEEECSSCSSC-------
T ss_pred             E--CCCcc-ccceEEEchhHeEEeCCCCeEEEEE--CCCCcEEEEECCCCC----CCcEEEEEEEeeCCCCCC-------
Confidence            4  23322 1333445455555456888999887  667899999999863    234689999998655322       


Q ss_pred             eeEEecCCcccEEEcCCCCccceEEEEEEEecCC-----C-cCCCCccEEEEcCCCCC
Q psy6638         213 KSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSV-----G-KGPFSEPFIARTNEGDF  264 (273)
Q Consensus       213 ~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~-----g-~~~~s~~~~~~t~~~~P  264 (273)
                      .....  .....+.|.+|.|++.|.|+|+|....     | .|+||+++.+.|.+..|
T Consensus       181 ~~~~~--~~~~~~~l~~L~p~~~Y~vqVR~k~~~~~~~~g~WSeWS~~~~~~t~~~~~  236 (247)
T 2erj_C          181 TEQSV--DYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSKE  236 (247)
T ss_dssp             EEEEE--CSSCEEEESCCCTTSCEEEEEEEEECSSSCCCCCCCCCCCCEEECC-----
T ss_pred             EEEec--CCceEEEecCCCCCCEEEEEEEEEeCCCCCCCCccCCCCcCEEEECCCCCC
Confidence            22221  124689999999999999999999843     3 37888888888876544

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=6.5e-14  Score=92.64  Aligned_cols=103  Identities=20%  Similarity=0.312  Sum_probs=84.1

Q ss_pred             EecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        52 ~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      ...+|.+|.++.+......++.|+|.++...++.+.+|.|+|+.....+..  .........+.+.+.+|.+++.|.|+|
T Consensus        14 ~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~--~~~~~~~~~~~~~i~~L~p~t~Y~~~V   91 (119)
T 2ed7_A           14 SSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRER--ALNTTQPGSLQLTVGNLKPEAMYTFRV   91 (119)
T ss_dssp             SSSSCCCCSCCEEEEECSSCEEEECCCCSCCSSCEEEEEEEEEESSCCCCE--EEECCCTTCCEEEECSCCSSSEEEECC
T ss_pred             CCCCCcCCcceEEEecCCCEEEEEEeCCCCCCCcEEEEEEEEEeCCCCcce--eeEeecCCceEEEeCCCCCCCEEEEEE
Confidence            356889999999999899999999999877777899999999986543221  111223456789999999999999999


Q ss_pred             EEeCCCCCCCCCcceEEEecCCCCC
Q psy6638         132 LAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      +|.|..|.+.++..+.+.+....|+
T Consensus        92 ~A~n~~G~g~~S~~~~~~T~~~~pP  116 (119)
T 2ed7_A           92 VAYNEWGPGESSQPIKVATQPESGP  116 (119)
T ss_dssp             EEEESSCBCSCCCCEEEECCCCSCC
T ss_pred             EEEcCCccCCCcCCEEEEeCCCCCC
Confidence            9999999999999999988766553

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.57  E-value=5.3e-14  Score=91.49  Aligned_cols=100  Identities=19%  Similarity=0.319  Sum_probs=78.9

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCc-cceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNT-AITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~-~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      .+|.+|..+.+.....+++.|.|.++...++ ++.+|.|+++.....+.   .........+.+.+.+|.+++.|.|||+
T Consensus         6 ~~P~~P~~p~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~---~~~~~~~~~~~~~v~~L~p~t~Y~frV~   82 (109)
T 1x5x_A            6 SGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYG---FKPKYDGEDLAYTVKNLRRSTKYKFKVI   82 (109)
T ss_dssp             CCCCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCC---CEEEEEESCSEEEEESCCSSCEEEEEEE
T ss_pred             CCCcCCCCCEEEEccCCEEEEEEcCCCCCCCCcccEEEEEEecCCCCcc---eEEeEeCCccEEEECCCCCCCEEEEEEE
Confidence            4677888888888899999999998875544 78999999987654211   0112233467899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCCC
Q psy6638         133 AENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      |.|..|.+.++..+.+.+....|.
T Consensus        83 A~n~~G~s~~S~~~~~~T~~~~P~  106 (109)
T 1x5x_A           83 AYNSEGKSNPSEVVEFTTCPDSGP  106 (109)
T ss_dssp             EECSSCEEEECCCEEEECCCCCCC
T ss_pred             EEeCCCCcCCccCEEeEeCCCCCC
Confidence            999999999998888888776554

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.57  E-value=4.4e-14  Score=91.73  Aligned_cols=98  Identities=23%  Similarity=0.454  Sum_probs=80.8

Q ss_pred             ecCCCCCcceEEEE--eeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEE
Q psy6638          53 QETPEAPKNIRITE--ESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQV  129 (273)
Q Consensus        53 ~~~P~~p~~~~~~~--~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~  129 (273)
                      ...|.+|.++++..  ...+++.|+|++|...++.+.+|.|+|+.... .|.      ......+.+.+.+|.+++.|.|
T Consensus         5 ~~~P~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~------~~~~~~~~~~l~~L~p~t~Y~~   78 (108)
T 2dm4_A            5 SSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWA------SQRAASNFTEIKNLLVNTLYTV   78 (108)
T ss_dssp             CCCTTSCEEEEEECCTTCSSCEEEEEECCSCCSSCEEEEEEEEEETTCSCCE------EEEESSSEEEECSCCSSCEEEE
T ss_pred             CCCCcCCcCeEEEEeccCCCEEEEEEcCCCCCCCcEEEEEEEEEECCCCCeE------EecCCccEEEeCCCCCCCEEEE
Confidence            35788999987765  47889999999998777889999999998654 343      1223457899999999999999


Q ss_pred             EEEEeCCCCCCCCCcceEEEecCCCCC
Q psy6638         130 RLLAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       130 ~v~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      +|+|.|..|.+.++..+.+++....|.
T Consensus        79 ~V~A~n~~G~g~~S~~~~~~T~~~~P~  105 (108)
T 2dm4_A           79 RVAAVTSRGIGNWSDSKSITTIKGSGP  105 (108)
T ss_dssp             EEEEEESSCEEEECCCEEEECCSCSSC
T ss_pred             EEEEECCCceeCCCCCEEEECCCCCCC
Confidence            999999999999999999998777664

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.57  E-value=4.1e-14  Score=93.47  Aligned_cols=99  Identities=24%  Similarity=0.369  Sum_probs=82.4

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC--CCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE--MWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..+|.+|.++.+......++.|.|.++...++++..|.|+++....  .|.     .......+.+.+.+|.+++.|.|+
T Consensus        15 ~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~-----~~~~~~~~~~~v~~L~p~t~Y~fr   89 (118)
T 1x3d_A           15 SCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFC-----QCYMGSQKQFKITKLSPAMGCKFR   89 (118)
T ss_dssp             CSCCCCCCCCEEEEEETTEEEEECCCCCCCSSCEEEEEEEECTTTSSSCCE-----EEEEESCSEEEEESCCTTCEEEEE
T ss_pred             CCCCcCCCCcEEeccCCCEEEEEECCCCCCCCcceEEEEEEecCCCCCCeE-----EeeccCCcEEEeCCCCCCCEEEEE
Confidence            4678899999999999999999999997777789999999987543  443     122335578999999999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEecCCCCC
Q psy6638         131 LLAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      |+|.|..|.+.++..+.+.|....|.
T Consensus        90 V~A~n~~G~s~~S~~~~~~T~~~~P~  115 (118)
T 1x3d_A           90 LSARNDYGTSGFSEEVLYYTSGCSGP  115 (118)
T ss_dssp             CCEEESSCBCCCCCCEEEECSCCCCC
T ss_pred             EEEEECCCCCCCccCEEEEcCCCCCc
Confidence            99999999999999998888766554

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A

Probab=99.57  E-value=6.2e-14  Score=90.17  Aligned_cols=96  Identities=20%  Similarity=0.243  Sum_probs=71.6

Q ss_pred             CCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      +.+|.++.+..  .+.+++.|+|++|.     +.+.+|.|+|+..+....      ..... .....++++|.+|+|++.
T Consensus         3 p~~P~~l~v~~--~t~~sv~lsW~~p~-----~~i~~Y~v~y~~~~~~~~------~~~~~-v~~~~~~~~l~~L~p~t~   68 (104)
T 2rb8_A            3 LDAPSQIEVKD--VTDTTALITWMPPS-----QPVDGFELTYGIKDVPGD------RTTID-LTEDENQYSIGNLKPDTE   68 (104)
T ss_dssp             CCCCEEEEEES--CCSSCEEEEEECCS-----SCCSEEEEEEEETTCTTC------CEEEE-EETTCCEEEECSCCTTCE
T ss_pred             CCCCCccEEEE--ecCCeEEEEEcCCC-----CccceEEEEEEECcCCCc------eEEEE-cCCCcCEEEeCCCCCCCE
Confidence            45888999988  89999999999984     468899999987643211      11111 233467999999999999


Q ss_pred             EEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         236 YAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       236 Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      |.|+|.|+|..|.|.++ ...++|.+..|..
T Consensus        69 Y~~~V~A~~~~g~s~p~-~~~~~T~~~~~~~   98 (104)
T 2rb8_A           69 YEVSLISRRGDMSSNPA-KETFTTGLAAALE   98 (104)
T ss_dssp             EEEEEEEEETTEECCCE-EEEEECCC-----
T ss_pred             EEEEEEEEeCCccCCCE-EEEEECCCCcccc
Confidence            99999999999998765 4678998877763

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.56  E-value=8.7e-14  Score=91.59  Aligned_cols=97  Identities=27%  Similarity=0.380  Sum_probs=81.9

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      .+|.+|.++.+.....+++.|+|.++...++.+.+|.|+++..+. .|.      ......+.+.|.+|.+++.|.|+|+
T Consensus        16 ~~P~~P~~l~~~~~~~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~------~~~~~~~~~~i~~L~p~t~Y~~~V~   89 (116)
T 1x5g_A           16 QLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQ------DVDVSSHSYTINGLKKYTEYSFRVV   89 (116)
T ss_dssp             SCCCCCSSCEEEEEETTEEEEECCCCSCCSSCCSEEEEEEEETTCCCCC------CEEECSSEEEECSCCTTCEEEEEEE
T ss_pred             CCCcCCCccEEEecCCCEEEEEEeCCCCCCCcccEEEEEEEECCCCccE------EEecCCceEEEcCCCCCCEEEEEEE
Confidence            578899999999999999999999987667789999999998653 332      1223467899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCCC
Q psy6638         133 AENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      |.|..|.|.++..+.++|....|+
T Consensus        90 A~n~~G~g~~S~~~~~~T~~~~P~  113 (116)
T 1x5g_A           90 AYNKHGPGVSTPDVAVRTLSDSGP  113 (116)
T ss_dssp             EECSSCCCCBCCCCCEECCCSSCC
T ss_pred             EEcCCCcCCCCCCEEEECCCCCCC
Confidence            999999999999999999877664

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=99.56  E-value=1.6e-14  Score=93.26  Aligned_cols=98  Identities=26%  Similarity=0.349  Sum_probs=76.1

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCcc-ceEEEEEEEeCCCC-CCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTA-ITQYIIQYKSSEEM-WPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~-~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ...|.+|.++.+...... +.|+|++|...++. +.+|.|+|+..+.. |.............+.+.+.+|.|++.|.|+
T Consensus         4 ~~~P~~P~~~~~~~~~~~-v~l~W~~P~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   82 (105)
T 2haz_A            4 MDTPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR   82 (105)
T ss_dssp             CCCCCCCEEEEEEECSSC-EEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEE
T ss_pred             CCCCcCCCCCEEEEcCCc-EEEEEcCCcccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCCEEEEE
Confidence            457888988888887777 99999998755555 99999999987643 5321111111124578999999999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEec
Q psy6638         131 LLAENPLGMSETGAELQASTL  151 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~  151 (273)
                      |+|.|..|.|.++....+.|.
T Consensus        83 V~A~n~~G~g~~S~~~~~~T~  103 (105)
T 2haz_A           83 LAALNGKGLGEISAASEFKTQ  103 (105)
T ss_dssp             EEEEETTEECCCCCCEEEECC
T ss_pred             EEEEcCCccCCCcCCEeeEEe
Confidence            999999999999998888874

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.56  E-value=3.6e-13  Score=97.75  Aligned_cols=124  Identities=16%  Similarity=0.286  Sum_probs=96.7

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      +..+.+.|.+|.++..|.|++.|.|..|.+..........+| +|.++.+...+.+++.|+|.++.  ++.+.+|.|+|+
T Consensus        74 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~t~~~~p-~P~~l~~~~~~~~sv~l~W~~p~--~~~i~~Y~v~~~  150 (203)
T 2gee_A           74 SSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVP-PPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYS  150 (203)
T ss_dssp             TTCCEEEECSCCTTCEEEEEEEEESSSCBCCCEEEEEECCCC-CCEEEEEEEEETTEEEEEEECCS--SCCCSEEEEEEE
T ss_pred             CCccEEEeCCCCCCCEEEEEEEEEeCCCccccEeeeecCCCc-CCCceEEEEcCCCEEEEEEcCCC--CCCccEEEEEEE
Confidence            345678999999999999999999988776544333333444 89999998899999999999984  347889999999


Q ss_pred             eCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCC
Q psy6638          95 SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETG  143 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s  143 (273)
                      ......  ...........+.+.+.+|.|++.|.|+|+|.+..|.|.+.
T Consensus       151 ~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  197 (203)
T 2gee_A          151 PVKNEE--DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL  197 (203)
T ss_dssp             ETTCGG--GCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             ECCCCC--ccEEEEcCCCcCEEEECCCCCCCEEEEEEEEecCCCcCCCe
Confidence            854321  11233456677899999999999999999999998877643

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.56  E-value=2.6e-14  Score=110.42  Aligned_cols=135  Identities=23%  Similarity=0.316  Sum_probs=101.2

Q ss_pred             EEEEEEeee-eeCCCEEEEEEEEcCCCCcee-EEEEEE--ecCCCCCcceEEEEe--eccEEEEEEeCCCCCCccceEEE
Q psy6638          17 ISELGIANV-LRQDSGTLSCLATNYHGTAEM-TIQLLV--QETPEAPKNIRITEE--SSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        17 ~~~l~i~~~-~~~~~~~y~~~a~n~~g~~~~-~~~~~~--~~~P~~p~~~~~~~~--~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      .+.+.|.+| .+...|.|+|.|.|..|.+.. ...+..  ..+|.+|.++.+...  +.+.+.|+|.+|...++.+.+|.
T Consensus       157 ~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~~~~i~~Y~  236 (303)
T 1i1r_A          157 PTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYN  236 (303)
T ss_dssp             TTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECCGGGGTSCEEEE
T ss_pred             ceEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCCCCCCcccEEEE
Confidence            467899999 899999999999999998754 222222  357899998887654  66899999999876566889999


Q ss_pred             EEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCC---CcceEEEecC
Q psy6638          91 IQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSET---GAELQASTLE  152 (273)
Q Consensus        91 v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~---s~~~~~~~~~  152 (273)
                      |+|+..+ ..|...... ......+.+.+.+|.+++.|.|+|+|.|..|.|.+   +..+.++|.+
T Consensus       237 v~y~~~~~~~w~~~~~~-~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T~e  301 (303)
T 1i1r_A          237 IQYRTKDASTWSQIPPE-DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE  301 (303)
T ss_dssp             EEEEETTCSSCEECCGG-GGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEECCC
T ss_pred             EEEEeCCCCCceEEccc-cCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeCCc
Confidence            9999865 345421100 01335678999999999999999999998886554   5556666644

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B*

Probab=99.56  E-value=1e-13  Score=101.08  Aligned_cols=103  Identities=19%  Similarity=0.202  Sum_probs=72.8

Q ss_pred             CCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      +.||.++++..  .+...+.|+|.+|......+.++.|+|.|+..+..+ +..     ...........+.|.+|.|++.
T Consensus       106 ~~pP~~l~~~~--~~~~~l~lsW~~p~~~~~~~~~l~Yevry~~~~~~w-~~~-----~~~~~~~~~~~~~l~~L~p~t~  177 (214)
T 2b5i_B          106 LMAPISLQVVH--VETHRCNISWEISQASHYFERHLEFEARTLSPGHTW-EEA-----PLLTLKQKQEWICLETLTPDTQ  177 (214)
T ss_dssp             CCCCEEEEEEE--ECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCS-TTS-----CCEEECSCCCEEEECSCCTTCE
T ss_pred             CCCCceEEEEE--ecCCeEEEEECCCCccccCCCceEEEEEEecCCCCh-hee-----eeeeecccceEEEeccCCCCCE
Confidence            36888999877  677899999999975322334789999999876432 111     1111122346899999999999


Q ss_pred             EEEEEEEecCCCc----CCCCccEEEEcCCCCCcc
Q psy6638         236 YAIVVRGYNSVGK----GPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       236 Y~~~v~a~n~~g~----~~~s~~~~~~t~~~~P~~  266 (273)
                      |.|+|+|....|.    |+||+.+.+.|.+..|..
T Consensus       178 Y~vqVRa~~~~~~~G~WS~WS~~~~~~T~~~~~~~  212 (214)
T 2b5i_B          178 YEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAALGK  212 (214)
T ss_dssp             EEEEEEEEESCCSSCCCCCCCCCEEEECCC-----
T ss_pred             EEEEEEEeeCCCCCCCccCCCCCEEEEcCCCCccC
Confidence            9999999986442    889999999999887753

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.55  E-value=1.8e-14  Score=106.79  Aligned_cols=135  Identities=12%  Similarity=0.070  Sum_probs=86.3

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe----cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ----ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~----~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      ...+.+.+.+|.++..|.|++.|.|..|.+..+....+.    .+|.+|.. ........++.|+|.+|...++++.+|.
T Consensus        43 ~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~~-~~~~~~~~sv~l~W~~P~~~~G~i~~Y~  121 (232)
T 4go6_B           43 PDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCA-IKISKSPDGAHLTWEPPSVTSGKIIEYS  121 (232)
T ss_dssp             ------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCEE-EEEEEETTEEEEEEECCSCCSSCCCEEE
T ss_pred             CCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCCee-eEEecCCCEEEEEEeCCCCCCCceeeEE
Confidence            345679999999999999999999999987653333332    23334443 3445678899999999987778999999


Q ss_pred             EEEEeCCCC-CCCccc--------eE--EecCCccEE-------EecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEe
Q psy6638          91 IQYKSSEEM-WPTQPL--------KI--IVPGSQTSA-------TLQPLLPATQYQVRLLAENPLGMSETGAELQAST  150 (273)
Q Consensus        91 v~~~~~~~~-~~~~~~--------~~--~~~~~~~~~-------~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~  150 (273)
                      |+++..... +.....        ..  ......+.+       .+.+|.+++.|.|||+|.|..|.|.++....+..
T Consensus       122 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~t~Y~frV~A~N~~G~Gp~S~v~t~~~  199 (232)
T 4go6_B          122 VYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQE  199 (232)
T ss_dssp             EEEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEESSSEEEEEEEEEECSSCBCCCEEEEEECC
T ss_pred             EEEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecCccCCceEEEEEEECCCcCCCCcccEEecc
Confidence            999875432 110000        00  011111122       2356889999999999999999998776444433

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.55  E-value=1.4e-13  Score=89.80  Aligned_cols=99  Identities=15%  Similarity=0.189  Sum_probs=79.3

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccc----eEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAI----TQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQ  128 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~----~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~  128 (273)
                      .+|.+|.++++...+.+++.|+|.++....+.+    .+|.|.|+.... .+.    ........+.+.|.+|+|++.|.
T Consensus         7 ~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~~~~~~~~Y~v~y~~~~~~~~~----~~~~~~~~~~~~i~gL~P~T~Y~   82 (113)
T 1x5j_A            7 GPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK----YKNANATTLSYLVTGLKPNTLYE   82 (113)
T ss_dssp             CCCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCC----CEECCBCSSEEEEESCCTTCEEC
T ss_pred             CCCCCCcceEEEEecCCEEEEEecCCCCccccccCcCceEEEEEEECCCCCeE----EEEEecCcCEEEeCCCCCCcEEE
Confidence            578899999999999999999999876444333    499999987321 111    22334566789999999999999


Q ss_pred             EEEEEeCCCCCCCCCcceEEEecCC-CCC
Q psy6638         129 VRLLAENPLGMSETGAELQASTLEE-APN  156 (273)
Q Consensus       129 ~~v~a~~~~g~~~~s~~~~~~~~~~-~p~  156 (273)
                      |+|+|.+..|.|.++..+.++|.+. +|.
T Consensus        83 f~V~A~~~~G~g~~S~~v~~~T~~~~~Ps  111 (113)
T 1x5j_A           83 FSVMVTKGRRSSTWSMTAHGTTFELSGPS  111 (113)
T ss_dssp             CEEEEECSSCBCCCCCCCCEECCCSSCCC
T ss_pred             EEEEEecCCccCCCcccEEeeccCCCCCC
Confidence            9999999999999999999999877 664

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C*

Probab=99.55  E-value=9.6e-13  Score=95.09  Aligned_cols=181  Identities=14%  Similarity=0.169  Sum_probs=109.0

Q ss_pred             ceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC---CCCCCccceEEecCCccEEEe--cCCCCCCeEEEEEEEeC
Q psy6638          61 NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE---EMWPTQPLKIIVPGSQTSATL--QPLLPATQYQVRLLAEN  135 (273)
Q Consensus        61 ~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~y~~~v~a~~  135 (273)
                      ++.........+.|.|.+...  .....|.+.+....   ..+..........+....+.+  ..+.....|.+.|.+  
T Consensus         4 nl~C~~~~~~~~~C~W~~~~~--~~~~~y~l~y~~~~~~~~~~~~C~~y~~~~~~~~~C~~~~~~~~~~~~~~i~v~~--   79 (199)
T 2b5i_C            4 EVQCFVFNVEYMNCTWQSSSE--PQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQD--   79 (199)
T ss_dssp             CCEEEEETTTEEEEECCCCSS--SSCCCCEEEEEETTSSSCCCEECSSEEEETTEEEEEEEEGGGCCTTSCEEEEEEC--
T ss_pred             cCEEEECCCcEEEEEecCCCc--CCCceEEEEEEECCCCCCccccCCCccccCCceeEEEECCcccccceEEEEEEEe--
Confidence            455665667899999997641  12346777766442   222211111112222234444  334445567777753  


Q ss_pred             CCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeE
Q psy6638         136 PLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSV  215 (273)
Q Consensus       136 ~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~  215 (273)
                      ..|.. .+....+.....+.+.||.++++..  .....+.|+|++|..    ...+.|+|+|+..++..+       ...
T Consensus        80 ~~g~~-~s~~~~~~~~~iVkP~pP~~l~~~~--~~~~~l~l~W~~p~~----~~~l~yev~y~~~~~~~w-------~~~  145 (199)
T 2b5i_C           80 PREPR-RQATQMLKLQNLVIPWAPENLTLHK--LSESQLELNWNNRFL----NHCLEHLVQYRTDWDHSW-------TEQ  145 (199)
T ss_dssp             SSCTT-CEEEEEECGGGSEECCCCEEEEEEE--EETTEEEEEEECSSC----STTCEEEEEEEETTCSSC-------EEE
T ss_pred             CCcce-ecceEEEchHHceecCCCcEEEEEE--CCCCCEEEEECCCCC----CCceEEEEEEeecCCccc-------EEE
Confidence            33321 2333455555555456888999877  666899999999863    234589999998755322       222


Q ss_pred             EecCCcccEEEcCCCCccceEEEEEEEecCC-----C-cCCCCccEEEEcCC
Q psy6638         216 ELDNQYEGELRIPGLTPYTKYAIVVRGYNSV-----G-KGPFSEPFIARTNE  261 (273)
Q Consensus       216 ~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~-----g-~~~~s~~~~~~t~~  261 (273)
                      ..  .....+.|.+|.|++.|.|+|+|....     | .|+||+++.+.|..
T Consensus       146 ~~--~~~~~~~l~~l~p~~~Y~vqVR~~~~~~~~~~g~WSeWS~~~~~~t~~  195 (199)
T 2b5i_C          146 SV--DYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNT  195 (199)
T ss_dssp             EE--CSSCEEEECSCCTTSCEEEEEEEECCSSSCCCCCCCCCCCCEEC----
T ss_pred             ec--cCceEEEecCCCCCcEEEEEEEEeccCCcCcCCeECCCCCCEEecCCc
Confidence            21  124689999999999999999999843     3 36778777777654

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.54  E-value=8.4e-14  Score=90.88  Aligned_cols=99  Identities=22%  Similarity=0.317  Sum_probs=80.9

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ..+|.+|.++.+......++.|.|.+|...++.+.+|.|+|+..+....   .........+.+.+.+|.+++.|.|+|+
T Consensus         8 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   84 (111)
T 1x5l_A            8 QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQ---SYSTLKAVTTRATVSGLKPGTRYVFQVR   84 (111)
T ss_dssp             CCCCCCCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCS---SCEEEEESSSEEEECSCCTTCEEEECEE
T ss_pred             CCCCCCCceEEEEEcCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCce---eEEEecCCCCEEEEcCCCCCCEEEEEEE
Confidence            4678888898888888999999999987777789999999998653211   1223345678899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCC
Q psy6638         133 AENPLGMSETGAELQASTLEEA  154 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~  154 (273)
                      |.|..|.|.++..+.+.+....
T Consensus        85 A~n~~G~g~~S~~~~~~T~~~~  106 (111)
T 1x5l_A           85 ARTSAGCGRFSQAMEVETGKPS  106 (111)
T ss_dssp             EEETTEECCCCCCEEEECCCTT
T ss_pred             EEeCCcCCCCcccEEEEcCCCC
Confidence            9999999999999999886543

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}

Probab=99.54  E-value=1.4e-13  Score=87.82  Aligned_cols=89  Identities=19%  Similarity=0.230  Sum_probs=68.5

Q ss_pred             CCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      +.+|.++++..  .+.+++.|+|++|..     .+.+|.|+|+..+.....      .... .....+.++|.+|+|++.
T Consensus         2 p~~P~~l~~~~--~~~~sv~lsW~pP~~-----~i~~Y~v~y~~~~~~~~~------~~~~-~~~~~t~~~i~~L~p~t~   67 (100)
T 3b83_A            2 LQPPFNIKVTN--ITLTTAVVTWQPPIL-----PIEGILVTFGRKNDPSDE------TTVD-LTSSITSLTLTNLEPNTT   67 (100)
T ss_dssp             CCCCEEEEEES--CCSSCEEEEEECCSS-----CCSEEEEEEEESSCTTTC------EEEE-ECTTEEEEEECSCCTTCE
T ss_pred             CccCCccEEEE--ecCCEEEEEEcCCcc-----cCCEEEEEEEECCCCCCc------eEEE-ECCcceEEEECCCCCCCE
Confidence            35788999988  899999999999853     588999999976532211      1111 234568999999999999


Q ss_pred             EEEEEEEecCCCcCCCCccEEEEc
Q psy6638         236 YAIVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       236 Y~~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      |.|+|+|+|..|.|+++. ..+.+
T Consensus        68 Y~~~V~A~n~~g~s~p~~-~~~~~   90 (100)
T 3b83_A           68 YEIRIVARNGQQYSPPVS-TTFTT   90 (100)
T ss_dssp             EEEEEEEEETTEECCCEE-EEEEC
T ss_pred             EEEEEEEEeCCCCCCCEE-EEEEE
Confidence            999999999999998774 33443

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.54  E-value=1.4e-13  Score=89.63  Aligned_cols=99  Identities=22%  Similarity=0.408  Sum_probs=79.6

Q ss_pred             ecCCCCCcceEE-EEeeccEEEEEEeCCC-CCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEE
Q psy6638          53 QETPEAPKNIRI-TEESSRSLQISWTAPY-SGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQV  129 (273)
Q Consensus        53 ~~~P~~p~~~~~-~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~  129 (273)
                      ..+|.+|.++.+ .....+++.|+|.+|. +++.++.+|.|+++... ..|..     ......+.+.+.+|.+++.|.|
T Consensus         6 ~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~~~~~~-----~~~~~~~~~~v~~L~p~t~Y~f   80 (110)
T 2crz_A            6 SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPRE-----VYQGSEVECTVSSLLPGKTYSF   80 (110)
T ss_dssp             CCCCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEE-----EEEESCSEEEEESCCTTCEEEE
T ss_pred             CCCCCCCCCceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCCCceEE-----EEeCCcEEEEECCcCCCCEEEE
Confidence            467889999888 4567889999998775 45678999999998754 34541     2234577899999999999999


Q ss_pred             EEEEeCCCCCCCCCcceEEEecCCCCC
Q psy6638         130 RLLAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       130 ~v~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      +|+|.|..|.|.++..+.+.+....|.
T Consensus        81 rV~A~n~~G~g~~S~~~~~~T~~~~P~  107 (110)
T 2crz_A           81 RLRAANKMGFGPFSEKCDITTAPGSGP  107 (110)
T ss_dssp             CCEEECSSCBCCCCCCEEEECCCSCCC
T ss_pred             EEEEEcCCccCCCCCccccccCCCCCC
Confidence            999999999999999998888766553

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3.7e-13  Score=88.96  Aligned_cols=100  Identities=25%  Similarity=0.390  Sum_probs=79.6

Q ss_pred             cCC-CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          54 ETP-EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        54 ~~P-~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ..| .+|.++++.....+++.|+|.++..  +.+.+|.|+|+....... ...........+.+.|.+|.+++.|.|+|+
T Consensus        16 ~~P~~~P~~l~~~~~~~~sv~l~W~~p~~--g~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   92 (119)
T 2ee2_A           16 DAPSEAPTEVGVKVLSSSEISVHWEHVLE--KIVESYQIRYWAAHDKEE-AANRVQVTSQEYSARLENLLPDTQYFIEVG   92 (119)
T ss_dssp             CCCCCCCCSCEEEEEETTEEEEECCCCSC--TTCCEEEEEEEESSSCGG-GCEEEEEETTCSEEEECSCCTTCEEEEEEE
T ss_pred             cCCCCCCCcEEEEEccCCEEEEEecCCCC--CccceEEEEEEECCCccc-CcEEEEcCCCEeEEEECCCCCCCEEEEEEE
Confidence            344 4788999999999999999999865  679999999987653211 112334445667899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCCC
Q psy6638         133 AENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      |.|..|.|.++..+.+++....|+
T Consensus        93 A~n~~G~g~~S~~~~~~T~~~~pp  116 (119)
T 2ee2_A           93 ACNSAGCGPPSDMIEAFTKKASGP  116 (119)
T ss_dssp             EECSSSCCCCCCCEEEECCCCCCS
T ss_pred             EEcCCccCCCCCCEEEECCCCCCC
Confidence            999999999999999998766553

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.54  E-value=9.8e-14  Score=101.72  Aligned_cols=134  Identities=17%  Similarity=0.127  Sum_probs=97.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEE--ecCCCCCcceEEEEe------eccEEEEEEeCCCCCCccc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLV--QETPEAPKNIRITEE------SSRSLQISWTAPYSGNTAI   86 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~--~~~P~~p~~~~~~~~------~~~~~~l~W~~~~~~~~~~   86 (273)
                      ..+.+.+.+|.+...|.+++.|.|..|...+ ...+..  ..+|.+|.++.+...      ....+.|+|++|...+..+
T Consensus        66 ~~~~~~~~~L~~~~~Y~~~V~A~N~~G~~~s~~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~~  145 (215)
T 1cd9_B           66 NNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYME  145 (215)
T ss_dssp             CEEEEEGGGCCTTSCEEEEEEEEETTEEEECCCEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCGGGTTSC
T ss_pred             cEEEECCcccccceEEEEEEEEECCCCCccCccEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCCCCCeEE
Confidence            4567778889999999999999999987643 222222  247899998887765      5788999999886433344


Q ss_pred             eEEEEEEE-eC-CCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC---CCCCCcceEEEecC
Q psy6638          87 TQYIIQYK-SS-EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG---MSETGAELQASTLE  152 (273)
Q Consensus        87 ~~y~v~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g---~~~~s~~~~~~~~~  152 (273)
                      ..|+|+|+ .. ...|...   .......+.+.+.+|.|++.|.|+|+|.+..|   +|.||..+.+.|.+
T Consensus       146 l~Y~v~y~~~~~~~~w~~~---~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T~e  213 (215)
T 1cd9_B          146 QECELRYQPQLKGANWTLV---FHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTM  213 (215)
T ss_dssp             EEEEEEEEESSTTCCCEEE---EEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECCCC
T ss_pred             EEEEEEEccCCCCCCcEEE---ecccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceecCC
Confidence            79999999 43 3455521   11233456789999999999999999998755   45677777777754

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.53  E-value=7.9e-14  Score=91.64  Aligned_cols=100  Identities=33%  Similarity=0.495  Sum_probs=81.5

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      ...|.+|.++++.....+++.|+|+++..+  .+.+|.|+|+..+. .|.    . ......+.+.+.+|.+++.|.|+|
T Consensus        15 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~--~i~~Y~v~~~~~~~~~~~----~-~~~~~~~~~~i~~L~p~t~Y~~~V   87 (115)
T 1x5z_A           15 TGVPGQPLNFKAEPESETSILLSWTPPRSD--TIANYELVYKDGEHGEEQ----R-ITIEPGTSYRLQGLKPNSLYYFRL   87 (115)
T ss_dssp             SCCCCCCEEEEEECSSSSEEEEEEECCSCC--CCCEEEECBEESSSCCCB----C-CEECSSSEEEEECCCTTCEEEECE
T ss_pred             CCCCCCCccCEeeeCCCCEEEEEEcCCCCC--CccEEEEEEEeCCCCCce----E-EecCCCcEEEECCCCCCCeEEEEE
Confidence            457889999999888899999999998653  78899999988653 231    1 112345789999999999999999


Q ss_pred             EEeCCCCCCCCCcceEEEecCCCCCCCC
Q psy6638         132 LAENPLGMSETGAELQASTLEEAPNGAP  159 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~~~~p~~~p  159 (273)
                      +|.|..|.|.++..+.+.+....|+.||
T Consensus        88 ~A~n~~G~g~~S~~~~~~T~~~~P~~pp  115 (115)
T 1x5z_A           88 AARSPQGLGASTAEISARTMQSSGPSSG  115 (115)
T ss_dssp             EEECSSCEEEECCCEEEECCCCCCCCCC
T ss_pred             EEECCCcccCCCcCEEEecCCCCCCCCC
Confidence            9999999999999999999887776554

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.53  E-value=1.9e-13  Score=89.68  Aligned_cols=98  Identities=15%  Similarity=0.159  Sum_probs=77.0

Q ss_pred             CCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      +.+|.++++..  .+.+++.|+|.+|.     +.+.+|.|+|+..+...        .... .......++|.+|+|++.
T Consensus         8 p~~P~~l~~~~--~t~~sv~lsW~~p~-----~~i~~Y~v~y~~~~~~~--------~~~~-v~~~~t~~~l~~L~P~t~   71 (115)
T 2cuh_A            8 PDGPTQLRALN--LTEGFAVLHWKPPQ-----NPVDTYDIQVTAPGAPP--------LQAE-TPGSAVDYPLHDLVLHTN   71 (115)
T ss_dssp             CSSCEEEECCC--CSSSCEEEEEECCS-----SCCSEEEEEEECSSSCC--------EEEE-EETTCSEEEECSCCSSSE
T ss_pred             CCCCcceEEEe--ccCCeEEEEEECCC-----CCccEEEEEEEcCCCCc--------EEEE-ECCCccEEEEeCCCCCCE
Confidence            35788999988  89999999999974     35789999998754321        1111 233457999999999999


Q ss_pred             EEEEEEEecCCCcCCCCccEEEEcCCCCCcccccc
Q psy6638         236 YAIVVRGYNSVGKGPFSEPFIARTNEGDFLFLFCA  270 (273)
Q Consensus       236 Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~~~~~  270 (273)
                      |.|+|+|++..|.+.+. .+.+.|..++|..|...
T Consensus        72 Y~~~V~A~~~~~~s~~~-~~~~~T~~~~P~~l~~~  105 (115)
T 2cuh_A           72 YTATVRGLRGPNLTSPA-SITFTTGLEAPRDLEAK  105 (115)
T ss_dssp             EEEEEEEEETTEECCCE-EEEEESCCCCTTTSSSC
T ss_pred             EEEEEEEEeCCCcCCCE-EEEEEeCCCCCCCcEEE
Confidence            99999999988887655 47799999999877654

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.53  E-value=2.5e-13  Score=90.01  Aligned_cols=100  Identities=26%  Similarity=0.374  Sum_probs=79.8

Q ss_pred             EecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC--CCCCCccceEEecCCccEEEecCCCCCCeEEE
Q psy6638          52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE--EMWPTQPLKIIVPGSQTSATLQPLLPATQYQV  129 (273)
Q Consensus        52 ~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~  129 (273)
                      ...+|.+|.++.+...+.+.+.|.|.++.+++.++.+|.|+++...  ..|...  ........+.+.+.+|.+++.|.|
T Consensus        14 ~~~~P~~P~~~~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~w~~~--~~~~~~~~~~~~v~~L~p~t~Y~f   91 (121)
T 1x4z_A           14 RLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILA--TSAIPPSRLSVEITGLEKGISYKF   91 (121)
T ss_dssp             SCCCCCCCCCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEE--EEEECTTCCEEEEESCCTTCEEEE
T ss_pred             cCCCCccCCCCEEEEccCCEEEEEEECCCCCCCcceEEEEEEEECCCCCceEEe--ecccCCCcCEEEECCCCCCCEEEE
Confidence            3578999999999999999999999987677778999999999864  556521  112245678899999999999999


Q ss_pred             EEEEeCCCCCCCCCcceE-EEecCC
Q psy6638         130 RLLAENPLGMSETGAELQ-ASTLEE  153 (273)
Q Consensus       130 ~v~a~~~~g~~~~s~~~~-~~~~~~  153 (273)
                      +|+|.|..|.+.++.... +.+...
T Consensus        92 rV~A~n~~G~s~~S~~~~~v~~~~~  116 (121)
T 1x4z_A           92 RVRALNMLGESEPSAPSRPYVVSGS  116 (121)
T ss_dssp             EEEEEETTEECCCCCCCCCEECCSS
T ss_pred             EEEEEcCCCcCCCcCCCCCEEcCCC
Confidence            999999999988887764 444333

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.52  E-value=7.1e-14  Score=92.89  Aligned_cols=104  Identities=28%  Similarity=0.458  Sum_probs=81.6

Q ss_pred             ecCCC-CCcceEEEEeeccEEEEEEeCCCC--CCccceEEEEEEEeCCC-CCCCc-cceEEecCCccEEEecCCCCCCeE
Q psy6638          53 QETPE-APKNIRITEESSRSLQISWTAPYS--GNTAITQYIIQYKSSEE-MWPTQ-PLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        53 ~~~P~-~p~~~~~~~~~~~~~~l~W~~~~~--~~~~~~~y~v~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      ...|. +|.++++......++.|+|.++..  .++.+.+|.|+|+.... .|... ..........+.+.|.+|.+++.|
T Consensus        12 ~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y   91 (122)
T 1va9_A           12 EAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQY   91 (122)
T ss_dssp             CCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCE
T ss_pred             CCCCCCCCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEEEeCCCCCCCEE
Confidence            34564 888999988889999999999875  57789999999998653 23211 111122334578999999999999


Q ss_pred             EEEEEEeCCCCCCCCCcceEEEecCCCCC
Q psy6638         128 QVRLLAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      .|+|+|.|..|.|.++..+.++|...+|.
T Consensus        92 ~~~V~A~n~~G~g~~S~~~~~~T~~~~P~  120 (122)
T 1va9_A           92 GVVVQAFNRAGTGPSSSEINATTLESGPS  120 (122)
T ss_dssp             EEEEEEEETTEECCCCCCEECCCCSSCCC
T ss_pred             EEEEEEEcCCCCCCCccCEEEEeCCCCCC
Confidence            99999999999999999999998877664

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=4.6e-13  Score=88.75  Aligned_cols=100  Identities=16%  Similarity=0.199  Sum_probs=78.9

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccc----eEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAI----TQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~----~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      ..+|.+|.++++...+.+++.|+|.++....+.+    .+|.|.|+.... .+.  ..  ......+.+.|.+|+|++.|
T Consensus        16 ~~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~i~~~~~~Y~v~y~~~~~~~~~--~~--~~~~~~~~~~v~gL~P~T~Y   91 (123)
T 2edd_A           16 STPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAK--YK--SEDTTSLSYTATGLKPNTMY   91 (123)
T ss_dssp             CCSSCCCEEEEEEEEETTEEEEEEECSSSCSSCCCSCCCCEEEEEEETTCTTCC--CC--CEEESSSEEEEESCCTTCEE
T ss_pred             CCCCCCCcceEEEEcCCCeEEEEecCCCCCcccccCcCceEEEEEEECCCCCcc--EE--EEeCCceEEEecCCCCCCEE
Confidence            4678899999999999999999999775433333    399999987632 111  11  12234678999999999999


Q ss_pred             EEEEEEeCCCCCCCCCcceEEEecCC-CCC
Q psy6638         128 QVRLLAENPLGMSETGAELQASTLEE-APN  156 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~s~~~~~~~~~~-~p~  156 (273)
                      .|+|+|.|..|.|.++..+.++|.+. +|.
T Consensus        92 ~f~V~A~n~~g~g~~S~~v~~~T~~~~~Ps  121 (123)
T 2edd_A           92 EFSVMVTKNRRSSTWSMTAHATTYEASGPS  121 (123)
T ss_dssp             EEEEEECCSSSCCCCCCCEEEECCCSSSCC
T ss_pred             EEEEEEeCCCcccCCCCCEEEEccCCCCCC
Confidence            99999999999999999999999887 664

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.52  E-value=4.4e-13  Score=86.32  Aligned_cols=92  Identities=21%  Similarity=0.268  Sum_probs=72.2

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      ++.+|.++++..  .+.+++.|+|++|.     +.+.+|.|+|+..++.        +.... .....++++|.+|+|++
T Consensus         7 ~p~~P~~l~v~~--~~~~sv~lsW~~p~-----~~i~~Y~i~y~~~~~~--------~~~~~-~~~~~ts~~l~~L~p~t   70 (105)
T 2cum_A            7 GLEAPRDLEAKE--VTPRTALLTWTEPP-----VRPAGYLLSFHTPGGQ--------TQEIL-LPGGITSHQLLGLFPST   70 (105)
T ss_dssp             TCCCCEEEEEES--CCSSCEEEEEECCS-----SCCSEEEEEEECTTSC--------EEEEE-ECSSCSEEEECSCCTTC
T ss_pred             CCCCCCceEEEe--ccCCEEEEEEcCCC-----CccceEEEEEEeCCCc--------eEEEE-ECCCccEEEECCCCCCC
Confidence            456889999988  89999999999985     3688999999876532        12222 23446899999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEcCCCC
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIARTNEGD  263 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~  263 (273)
                      .|.|+|+|+|..|.|... ...+.|....
T Consensus        71 ~Y~~~V~A~~~~g~s~~~-~~~~~T~~~~   98 (105)
T 2cum_A           71 SYNARLQAMWGQSLLPPV-STSFTTGGLR   98 (105)
T ss_dssp             EEEEEEEEEBTTBCCCCE-EEEEECCCSC
T ss_pred             EEEEEEEEEeCCcccCCE-EEEEEeCCcC
Confidence            999999999999988764 4778886543

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A

Probab=99.51  E-value=1.3e-13  Score=88.11  Aligned_cols=90  Identities=24%  Similarity=0.386  Sum_probs=68.6

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|.++++..  .+.+++.|+|++|..   ++.+.+|.|.|+..++...      ...... +.....++|.+|+|++.|
T Consensus         6 ~~P~~l~v~~--~t~~Sv~l~W~~p~~---~~~i~~Y~v~y~~~~~~~~------~~~~~v-~~~~t~~~l~~L~p~t~Y   73 (101)
T 3k2m_C            6 SVPTKLEVVA--ATPTSLLISWDAPMS---SSSVYYYRITYGETGGNSP------VQEFTV-PYSSSTATISGLSPGVDY   73 (101)
T ss_dssp             BSSCEEEEEE--EETTEEEEEECCCCT---TSCCCEEEEEEEETTCSSC------CEEEEE-ETTCCEEEECSCCTTCEE
T ss_pred             CCCcceEEee--cCCCEEEEEecCCCC---CCceeeEEEEEEECCCCCc------cEEEEc-CCCccEEEECCCCCCCEE
Confidence            4788999988  899999999999864   6789999999998754311      111222 234679999999999999


Q ss_pred             EEEEEEecCCCc-----CCCCccEEEEc
Q psy6638         237 AIVVRGYNSVGK-----GPFSEPFIART  259 (273)
Q Consensus       237 ~~~v~a~n~~g~-----~~~s~~~~~~t  259 (273)
                      .|+|+|.+..|.     |++. .+.++|
T Consensus        74 ~~~V~A~~~~~~~~~~~s~p~-~~~~~T  100 (101)
T 3k2m_C           74 TITVYAWGEDSAGYMFMYSPI-SINYRT  100 (101)
T ss_dssp             EEEEEEEEECTTSCEEECBCE-EEEEEC
T ss_pred             EEEEEEEeCCccceeecCCCE-EEEeec
Confidence            999999999888     6544 345555

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=99.51  E-value=1.5e-13  Score=89.84  Aligned_cols=99  Identities=12%  Similarity=0.224  Sum_probs=62.9

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcC-CCCccceeeeeeeE----EecCCcccEEEcC
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISS-GSSLALSSYTLKSV----ELDNQYEGELRIP  228 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~i~  228 (273)
                      .||.+|.   +..  .+.+++.|.|.+|.+.  +.+|++|.|+|+..+ ...+..........    .........+++.
T Consensus         4 ~pP~~P~---v~~--~~~~sv~L~W~~P~~~--G~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~   76 (115)
T 2ic2_A            4 YPPTPPN---VTR--LSDESVMLRWMVPRND--GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVT   76 (115)
T ss_dssp             CCCCCCE---EEE--CC---EEEEEEEECCS--SCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEEC
T ss_pred             CCCCcCE---eEE--EeCCEEEEEEcCCCCC--CCCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeC
Confidence            4556775   344  6889999999999873  468999999999873 22211100000000    0112234578999


Q ss_pred             CCCccceEEEEEEEecCCCcC---CCCccEEEEc
Q psy6638         229 GLTPYTKYAIVVRGYNSVGKG---PFSEPFIART  259 (273)
Q Consensus       229 ~L~p~~~Y~~~v~a~n~~g~~---~~s~~~~~~t  259 (273)
                      +|.|++.|.|+|+|.|..|.|   +.|..+.+++
T Consensus        77 ~L~p~t~Y~FRV~A~N~~G~~~pS~~S~~~~~~~  110 (115)
T 2ic2_A           77 DLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP  110 (115)
T ss_dssp             SCCSSEEEEEEEEEEETTSCEEECCCCCCEEECC
T ss_pred             CCCCCCEEEEEEEEEeCCCCCCCCCCCCCEEeCC
Confidence            999999999999999999975   4555565554

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.51  E-value=3.6e-14  Score=93.06  Aligned_cols=100  Identities=18%  Similarity=0.272  Sum_probs=76.9

Q ss_pred             EEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCC----cc-ceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCC
Q psy6638          49 QLLVQETPEAPKNIRITEESSRSLQISWTAPYSGN----TA-ITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLL  122 (273)
Q Consensus        49 ~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~----~~-~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~  122 (273)
                      .+....+|.+|..+.+...+.++++|.|.+|...+    .+ +..|.|+..... ..|.     .......+.+.+.+|+
T Consensus         9 ~~~~~~pp~~P~~p~v~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~~~~-----~v~~~~~t~~~v~gL~   83 (120)
T 1wfu_A            9 EPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYG-----VIYTGYATRHVVEGLE   83 (120)
T ss_dssp             CCTTCCCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEE-----EEEEESCSEEEEESCC
T ss_pred             EEEeeCCCCCCCCceeceEECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCCceE-----EEecCCccEEEECCCC
Confidence            34456677777777777889999999999987532    34 899999944322 3343     2233345679999999


Q ss_pred             CCCeEEEEEEEeCCCCCCCCCcceEEEecCC
Q psy6638         123 PATQYQVRLLAENPLGMSETGAELQASTLEE  153 (273)
Q Consensus       123 ~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~  153 (273)
                      |++.|.|||+|.|..|.+.++..+.+.|...
T Consensus        84 p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~  114 (120)
T 1wfu_A           84 PRTLYKFRLKVTSPSGEYEYSPVVSVATTRE  114 (120)
T ss_dssp             TTCEEEEEEEEECSSSCEEECCCEEEECCCC
T ss_pred             CCCEEEEEEEEECCCCCCCCCccEeeEcCCC
Confidence            9999999999999999999999888888655

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.51  E-value=1.6e-13  Score=106.51  Aligned_cols=136  Identities=21%  Similarity=0.163  Sum_probs=95.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEE--ecCCCCCcceEEEEe------eccEEEEEEeCCCCCCccceE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLV--QETPEAPKNIRITEE------SSRSLQISWTAPYSGNTAITQ   88 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~--~~~P~~p~~~~~~~~------~~~~~~l~W~~~~~~~~~~~~   88 (273)
                      +++...+|.+...|.|+|.|.|..|...+ ...+..  ..+|.+|.++.+...      ..+.+.|+|++|...+.....
T Consensus       162 ~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~~~l~  241 (313)
T 2d9q_B          162 CSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK  241 (313)
T ss_dssp             EEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEECCC-------CCSCEEEEEECCGGGTTSCEE
T ss_pred             EEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEECCCCCCCceeEE
Confidence            34444559999999999999999998643 222222  356899998877654      457899999988643333579


Q ss_pred             EEEEEE-eC-CCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC---CCCcceEEEecCCCCC
Q psy6638          89 YIIQYK-SS-EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS---ETGAELQASTLEEAPN  156 (273)
Q Consensus        89 y~v~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~---~~s~~~~~~~~~~~p~  156 (273)
                      |+|+|+ .. ...|...   .......+.+.+.+|.+++.|.|+|+|.+..|.|   .||..+.+.|...+|.
T Consensus       242 Y~v~y~~~~~~~~w~~~---~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~  311 (313)
T 2d9q_B          242 CELRHKPQRGEASWALV---GPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAA  311 (313)
T ss_dssp             EEEEEEESSSCCCCEEE---EEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC----
T ss_pred             EEEEEccCCCCCCcEEc---ccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccCCC
Confidence            999999 44 3456521   1223345678999999999999999999986654   5677778888766553

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.50  E-value=3.7e-13  Score=89.09  Aligned_cols=98  Identities=20%  Similarity=0.415  Sum_probs=79.0

Q ss_pred             ecCCCCCcceEEE-EeeccEEEEEEeCCCCC-CccceEEEEEEEeCCC--CCCCccceEEecCCccEEEecCCCCCCeEE
Q psy6638          53 QETPEAPKNIRIT-EESSRSLQISWTAPYSG-NTAITQYIIQYKSSEE--MWPTQPLKIIVPGSQTSATLQPLLPATQYQ  128 (273)
Q Consensus        53 ~~~P~~p~~~~~~-~~~~~~~~l~W~~~~~~-~~~~~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~  128 (273)
                      ...|.+|.++.+. ....+++.|+|.++... +.++.+|.|+++....  .|.     .......+.+.+.+|.+++.|.
T Consensus        15 ~~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~~~~-----~~~~~~~~~~~v~~L~p~t~Y~   89 (120)
T 2crm_A           15 PDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWE-----MIYSGATREHLCDRLNPGCFYR   89 (120)
T ss_dssp             CCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCE-----EEECSSCSEEEECSCCTTSCEE
T ss_pred             CCCCCCCCCCEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCcCCE-----EEEeccccEEEECCCCCCCEEE
Confidence            5678888887776 67889999999988654 4578999999998653  554     2233467789999999999999


Q ss_pred             EEEEEeCCCCCCCCCcceEEEecCCCC
Q psy6638         129 VRLLAENPLGMSETGAELQASTLEEAP  155 (273)
Q Consensus       129 ~~v~a~~~~g~~~~s~~~~~~~~~~~p  155 (273)
                      |+|+|.|..|.+.++..+.+.+....|
T Consensus        90 frV~A~n~~G~s~~S~~~~~~T~~~~p  116 (120)
T 2crm_A           90 LRVYCISDGGQSAVSESLLVQTPAVSG  116 (120)
T ss_dssp             EEEEEEETTEECCCCCCCCCCCCCCSC
T ss_pred             EEEEEEcCCccCCCcccEEEEcCCCCC
Confidence            999999999999999888887765544

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens}

Probab=99.50  E-value=4.6e-13  Score=93.52  Aligned_cols=120  Identities=17%  Similarity=0.183  Sum_probs=89.3

Q ss_pred             CccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEE-E-ecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccce
Q psy6638         112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQA-S-TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGV  189 (273)
Q Consensus       112 ~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~-~-~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~  189 (273)
                      ..+++.+.+++ |..|.|.+...          .+.+ . +.+...+.||.++++..  .++++++|+|++|...  +| 
T Consensus       116 ~vts~~vgdg~-g~~~~~~~~~k----------~v~i~~~tq~ev~p~Pp~NL~At~--VT~tSVtLsW~aP~~~--~G-  179 (238)
T 2w1n_A          116 SVTNSSVGDGE-GLVHEIAGTEK----------TVNIIEGTSPEIVVNPVRDFKASE--INKKNVTVTWTEPETT--EG-  179 (238)
T ss_dssp             EEEEEEEECTT-SCEEECBCEEE----------EEEEECCCCCCCCCCCCEEEEEEE--ECSSCEEEEEECCSCC--TT-
T ss_pred             ceeeEEEecCC-CcEEEeeccce----------eeeeccCCCCcCccCCCCceEEEE--ccCCeEEEEecCCCCC--CC-
Confidence            34567777888 88888776521          1111 1 12333447999999999  9999999999999873  45 


Q ss_pred             eeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcC
Q psy6638         190 LLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTN  260 (273)
Q Consensus       190 i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~  260 (273)
                      +.+|.|++...          ....   .+...++|++.+|+++|.|.|+|.|+|..|.+...+.+.++|.
T Consensus       180 I~gY~ly~~g~----------~v~~---v~~~~tsyt~~gLk~~TeYsF~V~A~d~~G~~Ss~e~vtVrTl  237 (238)
T 2w1n_A          180 LEGYILYKDGK----------KVAE---IGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTA  237 (238)
T ss_dssp             EEEEEEEETTE----------EEEE---EETTCCEEEECSCCTTCEEEEEEEEEETTSCBCCCEEEEEECC
T ss_pred             ceeEEEEeCCc----------eeEE---eeccceEEEecCCCCCCEEEEEEEEEeCCCCccccCcEEEEec
Confidence            99999998542          1112   2333578999999999999999999999999877788888885

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=99.50  E-value=6.2e-13  Score=85.07  Aligned_cols=94  Identities=23%  Similarity=0.308  Sum_probs=73.3

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCC--CCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYS--GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~--~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      .+|.++.+...+.+++.|+|.+|..  .++.+.+|.|.|+..+..-.............+++.|.+|+|++.|.|+|+|.
T Consensus         6 ~~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~v~V~A~   85 (102)
T 3n1f_C            6 TGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKMQCF   85 (102)
T ss_dssp             SCCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEEEEETTCSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCceeEEEEcCCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCCceEEEEEcCCceEEECCCCCCCCEEEEEEEEE
Confidence            4888999989999999999998864  67789999999998653210011123444556789999999999999999999


Q ss_pred             CCCCCCCCCcceEEEe
Q psy6638         135 NPLGMSETGAELQAST  150 (273)
Q Consensus       135 ~~~g~~~~s~~~~~~~  150 (273)
                      |..|.|.+|..+.++|
T Consensus        86 n~~G~G~~S~~~~~~T  101 (102)
T 3n1f_C           86 NEGGESEFSNVMICET  101 (102)
T ss_dssp             ETTEECCCCCCEEEEC
T ss_pred             CCCcCCCCCCCEEeec
Confidence            9999999998887776

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.50  E-value=2e-12  Score=94.71  Aligned_cols=137  Identities=19%  Similarity=0.244  Sum_probs=100.2

Q ss_pred             CccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceee
Q psy6638         112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLL  191 (273)
Q Consensus       112 ~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~  191 (273)
                      ....+.|.++.....+.|.|.|.|..|...    ..+......++.+|..+.+..   ...++.|.|.+|.... +.++.
T Consensus        74 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~----~~~~l~v~~~P~~p~~~~~~~---~~~~~~l~w~~p~~~~-~~pi~  145 (215)
T 3mtr_A           74 SASYLEVTPDSENDFGNYNCTAVNRIGQES----LEFILVQADTPSSPSIDQVEP---YSSTAQVQFDEPEATG-GVPIL  145 (215)
T ss_dssp             TEEEEEECCCSGGGCEEEEEEEECSSCEEE----EEEEEEECCCCCCCEEEEEEE---ETTEEEEEEECCSCCC-SSCEE
T ss_pred             CeeEEEEecCChhhCeEEEEEEEECCCceE----EEEEEEECCCCCCCcceEEEE---ecceEEEEEecCCccC-CCceE
Confidence            356788999999999999999999988542    222222224556777776643   6678999999876532 55889


Q ss_pred             eEEEEEEEcCCCCccceeeeeeeEEe-cCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         192 GYDVGYQISSGSSLALSSYTLKSVEL-DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       192 ~y~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      +|.|+|+..+...+..     ..... .......++|.+|.+++.|.|+|.|.|..|.|++|..+.++|++
T Consensus       146 ~y~v~~~~~~~~~w~~-----~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p  211 (215)
T 3mtr_A          146 KYKAEWRAVGEEVWHS-----KWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP  211 (215)
T ss_dssp             EEEEEEEETTCCCCEE-----EEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred             EEEEEEEECCCCcccc-----cccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence            9999999887543211     11111 11112689999999999999999999999999999999999875

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.4e-13  Score=91.36  Aligned_cols=101  Identities=20%  Similarity=0.318  Sum_probs=79.3

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      +|.+|.++++.....+++.|+|.+|...++.+.+|.|+|+......... .........+.+.+.+|.+++.|.|+|+|.
T Consensus        18 P~~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   96 (121)
T 2dlh_A           18 PSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNN-WMKHNVADSQITTIGNLVPQKTYSVKVLAF   96 (121)
T ss_dssp             CCSCCEEEEECCCSSSBCCEEEECCSCCCSCEEEEEEECCSCTTSCTTT-SCCCCCSSCSEECCBSCCSSCEEEEEEEEE
T ss_pred             CCCCCcccEEEecCCCEEEEEECCCCCCCCcEeEEEEEEEeCCCCCccc-cEEEecCCceEEEecCCCCCCEEEEEEEEE
Confidence            3358899988888899999999998777778999999998754311100 011122356788999999999999999999


Q ss_pred             CCCCCCCCCcceEEEecCCCCC
Q psy6638         135 NPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       135 ~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      |..|.|.++..+.++|...+|.
T Consensus        97 n~~G~g~~S~~~~~~T~~~~P~  118 (121)
T 2dlh_A           97 TSIGDGPLSSDIQVITQTGSGP  118 (121)
T ss_dssp             ESSCBCCCCCCEEEECCCCCSC
T ss_pred             eCCccCCCCCCEEEECCCCCCC
Confidence            9999999999999999877664

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B*

Probab=99.50  E-value=4.4e-12  Score=92.11  Aligned_cols=189  Identities=14%  Similarity=0.082  Sum_probs=105.5

Q ss_pred             cceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC--CCCCCccceEEecCC--ccEEEe--cCCCCCCeEEEEEEE
Q psy6638          60 KNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE--EMWPTQPLKIIVPGS--QTSATL--QPLLPATQYQVRLLA  133 (273)
Q Consensus        60 ~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~~~~~~--~~~~~~--~~l~~~~~y~~~v~a  133 (273)
                      .++.........++|.|.+....+.+ ..|.+.|+...  ..+.   .+......  ...+.+  ..+.....|.+.|.+
T Consensus         5 ~~l~C~~~~~~~~~C~W~~~~~~~~~-~~~~l~y~~~~~~~~~~---~C~~~~~~~~~~~C~~~~~~~~~~~~~~i~v~~   80 (207)
T 1iar_B            5 QEPTCVSDYMSISTCEWKMNGPTNCS-TELRLLYQLVFLLSEAH---TCIPENNGGAGCVCHLLMDDVVSADNYTLDLWA   80 (207)
T ss_dssp             EEEEEEECSSSEEEEEEEESSCCCHH-HHEEEEEEESSSSCCCE---EECCEESSSSEEEEEEECSCCCTTCCEEEEEEE
T ss_pred             CCCcEEECCCceEEEEecCCCCCCCC-cCEEEEEEeccCCCCCc---cCcCccCcccceEEEEeCcccccceEEEEEEEe
Confidence            35555555677899999987543333 47888887542  1111   11111111  123443  445566678988866


Q ss_pred             eCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCc-cceeeeEEEEEEEcCCCCccceeeee
Q psy6638         134 ENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESW-NGVLLGYDVGYQISSGSSLALSSYTL  212 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~-~~~i~~y~v~~~~~~~~~~~~~~~~~  212 (273)
                      .+..     .....+.....+-+.||.++++..  ..++.+.|+|++|..... ....+.|+|+|+..+..+.      .
T Consensus        81 ~~~~-----~~~~~f~~~~iVkp~PP~nl~~~~--~~~~~l~l~W~~p~~~~~~~~~~L~yev~y~~~~~~~~------~  147 (207)
T 1iar_B           81 GQQL-----LWKGSFKPSEHVKPRAPGNLTVHT--NVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPAD------F  147 (207)
T ss_dssp             TTEE-----EEEEEECGGGSBCCCCCEEEEEC------CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSC------E
T ss_pred             CCcc-----cccccEeeccccccCCCCCeEEEE--ccCCCEEEEECCCCCccccccccEEEEEEEccCCCchh------h
Confidence            3321     123444445555567999999875  456789999999864211 1234689999998765431      1


Q ss_pred             eeEEe-cCCcccEEEcCCCCccceEEEEEEEecC--CC-cCCCCccEEEEcCCCCCc
Q psy6638         213 KSVEL-DNQYEGELRIPGLTPYTKYAIVVRGYNS--VG-KGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       213 ~~~~~-~~~~~~~~~i~~L~p~~~Y~~~v~a~n~--~g-~~~~s~~~~~~t~~~~P~  265 (273)
                      ..... .......+.+.+|.|++.|.|+|+|...  .| .|+||+++.+.|.+..|-
T Consensus       148 ~~~~~~~~~~~~~~~~~~L~p~~~Y~vqVR~k~~~~~G~WSeWS~~~~~~t~~~~p~  204 (207)
T 1iar_B          148 RIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREPF  204 (207)
T ss_dssp             EEEEECSSCCEEEECC-----CCCEEEEEEEECGGGTCCCCCCCCCEEEC-------
T ss_pred             eeeeeecCCcEEEEEHHHCCCCCEEEEEEEEecCCCCCCCCCCCcCeEEECCCCccc
Confidence            11111 1222345666789999999999999975  56 488999999999887764

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.50  E-value=5.4e-13  Score=86.37  Aligned_cols=97  Identities=23%  Similarity=0.296  Sum_probs=77.2

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ..|.+|. +.+.....+++.|+|.+|...++.+.+|.|+|+..+. .|.    ........+.+.+.+|.+++.|.|+|+
T Consensus         6 ~~P~~p~-~~v~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~----~~~~~~~~~~~~i~~L~p~t~Y~~~V~   80 (107)
T 2dn7_A            6 SGPGRPT-MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPN----TIDFGKDDQHFTVTGLHKGTTYIFRLA   80 (107)
T ss_dssp             CCCCCCE-EEEEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTCSSCE----EEEEETTCCEEEEECCCTTCEEEEEEE
T ss_pred             CCCCCCc-EeEEecCCCEEEEEECCCCCCCCceeEEEEEEEECCCCCCE----EEEeCCCccEEEeCCCCCCCEEEEEEE
Confidence            4677776 6677778899999999987777789999999998653 333    234455677899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCCC
Q psy6638         133 AENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      |.|..|.|.++. ..+.+....|.
T Consensus        81 A~n~~G~g~~s~-~~~~T~~~~P~  103 (107)
T 2dn7_A           81 AKNRAGLGEEFE-KEIRTPEDLSG  103 (107)
T ss_dssp             EEETTEEEEEEE-EEEECCCCCCC
T ss_pred             EEcCCcccCCee-eEEeCCCCCCC
Confidence            999999888777 56777665553

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.49  E-value=1.3e-13  Score=92.05  Aligned_cols=103  Identities=21%  Similarity=0.276  Sum_probs=81.8

Q ss_pred             cCC-CCCcceEEEEeeccEEEEEEeCCC--CCCccceEEEEEEEeCCCCCC----C-ccceEEecCCccEEEecCCCCCC
Q psy6638          54 ETP-EAPKNIRITEESSRSLQISWTAPY--SGNTAITQYIIQYKSSEEMWP----T-QPLKIIVPGSQTSATLQPLLPAT  125 (273)
Q Consensus        54 ~~P-~~p~~~~~~~~~~~~~~l~W~~~~--~~~~~~~~y~v~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~l~~~~  125 (273)
                      ..| .+|.++++.....+++.|+|+++.  ..++.+.+|.|+|+.......    . ...........+.+.|.+|.|++
T Consensus        12 ~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   91 (125)
T 1uen_A           12 DLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFS   91 (125)
T ss_dssp             CCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSC
T ss_pred             CCCCCCCceeEEEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEEecCCccEEEeCCCCCCC
Confidence            345 689999999999999999999884  246689999999987653221    1 01233445667899999999999


Q ss_pred             eEEEEEEEeCCCCCCCCCcceEEEecCCCCC
Q psy6638         126 QYQVRLLAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       126 ~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      .|.|+|+|.|..|.|.++..+.++|...+|+
T Consensus        92 ~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~  122 (125)
T 1uen_A           92 HYTLNVRVVNGKGEGPASPDRVFNTPEGSGP  122 (125)
T ss_dssp             EEEEEEEEEESSCEEEECCCEEEECCCCCSS
T ss_pred             EEEEEEEEecCCCCCCCCCCEEEECCCCCCC
Confidence            9999999999999999999999999877764

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.49  E-value=3.1e-13  Score=87.62  Aligned_cols=95  Identities=27%  Similarity=0.361  Sum_probs=74.4

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      .+|++|..+.+. .+.+++.|+|.++.+++.++.+|.|+++..+ ..|..   ....++..+.+.+.+|.+++.|.|+|.
T Consensus         7 ~~P~pP~~~~~~-~~~~sv~L~W~p~~dggsPI~~Y~I~yr~~~~~~w~~---~~~~~~~~~~~~l~~L~p~t~Y~frV~   82 (114)
T 2kbg_A            7 REPSPPSIHGQP-SSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWL---EKKVQGNKDHIILEHLQWTMGYEVQIT   82 (114)
T ss_dssp             CCCCSCCEECCB-CSTTCEEEEECCCCCSSSCCSEEEEEEEESSCCSCCE---EEEEETTTCCEEECCCCTTCCEEEEEE
T ss_pred             CCccCCcccccc-cCCCEEEEEEECCCCCCCcccEEEEEEEeCCCCCcEE---eEEcCCCcCEEEEcCCCCCCEEEEEEE
Confidence            467888765433 5789999999988778899999999999864 34542   233456677899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCC
Q psy6638         133 AENPLGMSETGAELQASTLEE  153 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~  153 (273)
                      |.|..|.|.++. ..+.|...
T Consensus        83 A~N~~G~s~pS~-~~~~T~~~  102 (114)
T 2kbg_A           83 AANRLGYSEPTV-YEFSMPPK  102 (114)
T ss_dssp             EECTTSCEEEEE-EEECCCCC
T ss_pred             EEeCCcCcCCcC-CEEEcCCC
Confidence            999999988665 55666433

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=90.73  Aligned_cols=88  Identities=23%  Similarity=0.380  Sum_probs=65.9

Q ss_pred             cCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCC
Q psy6638         151 LEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL  230 (273)
Q Consensus       151 ~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  230 (273)
                      ....|+.+|.++.+..  .+.+++.|.|++|..     .+.+|.|.|+..++...      ...... ....+.++|.+|
T Consensus        24 ~~~tp~~~P~~l~v~~--~t~~Si~lsW~~p~~-----~i~~Y~V~y~~~~~~~~------~~~~~v-~~~~t~~~l~gL   89 (121)
T 2ocf_D           24 FQGSVSDVPTKLEVVA--ATPTSLLISWDAPAV-----TVRYYRITYGETGGNSP------VQEFTV-PGSKSTATISGL   89 (121)
T ss_dssp             -----CCSCEEEEEEE--ECSSCEEEEEECCSS-----CCCEEEEEEEETTTCSC------BEEEEE-ETTCCEEEECCC
T ss_pred             eccCCCCCCCccEEEe--cCCCEEEEEEcCCCC-----CCcEEEEEEEECCCCCc------cEEEEe-CCCcCEEEeCCC
Confidence            3345667899999988  899999999999853     48899999998765321      011111 234579999999


Q ss_pred             CccceEEEEEEEecCCCcCCCC
Q psy6638         231 TPYTKYAIVVRGYNSVGKGPFS  252 (273)
Q Consensus       231 ~p~~~Y~~~v~a~n~~g~~~~s  252 (273)
                      +|++.|.|+|+|+|..|.|++|
T Consensus        90 ~P~t~Y~~~V~A~~~~G~g~~S  111 (121)
T 2ocf_D           90 KPGVDYTITVYAVTGLRLMLAG  111 (121)
T ss_dssp             CTTCEEEEEEEEECCHHHHHHS
T ss_pred             CCCCEEEEEEEEEeCCCccCCC
Confidence            9999999999999999988764

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.48  E-value=1.2e-13  Score=91.13  Aligned_cols=101  Identities=25%  Similarity=0.406  Sum_probs=80.4

Q ss_pred             EEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC--CCCCCccceEEecCCccEEEecCCCCCCeEE
Q psy6638          51 LVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE--EMWPTQPLKIIVPGSQTSATLQPLLPATQYQ  128 (273)
Q Consensus        51 ~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~  128 (273)
                      ....+|.+|.++.+.....+.+.|.|.++.+++.++.+|.|+++...  ..|.    ........+.+.+.+|.+++.|.
T Consensus        11 ~~~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~----~~~~~~~~~~~~i~~L~p~t~Y~   86 (117)
T 1uem_A           11 DLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQ----TVANHVKTTLYTVRGLRPNTIYL   86 (117)
T ss_dssp             CSCCSCBCCCCCEEEEECSSCEEEECCCCBCSSSCCCEEEEEEEETTTEEEEE----EEEEEECSSEEEECSCCTTCEEE
T ss_pred             CCCCCccCCCCCEEEEecCCEEEEEEeCCCCCCcCceEEEEEEEECCCCCcee----EcccccCcCEEEECCCCCCCEEE
Confidence            34678999999999988999999999988766778999999998753  2333    11123356789999999999999


Q ss_pred             EEEEEeCCCCCCCCCcceE-EEecCCCC
Q psy6638         129 VRLLAENPLGMSETGAELQ-ASTLEEAP  155 (273)
Q Consensus       129 ~~v~a~~~~g~~~~s~~~~-~~~~~~~p  155 (273)
                      |+|+|.|..|.+.++.... +++....|
T Consensus        87 frV~A~n~~G~s~~S~~~~~v~t~~~~P  114 (117)
T 1uem_A           87 FMVRAINPQGLSDPSPMSDPVRTQDSGP  114 (117)
T ss_dssp             EEEEEEETTEEEEECCCCCCEECCCSSC
T ss_pred             EEEEEECCCccCCCcCCCccEEccCCCC
Confidence            9999999999888777665 66665544

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.48  E-value=2.4e-12  Score=93.89  Aligned_cols=132  Identities=19%  Similarity=0.237  Sum_probs=99.7

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEE--ecCCCCCcceEEEEee----ccEEEEEEeCCCCCC---c-c
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLV--QETPEAPKNIRITEES----SRSLQISWTAPYSGN---T-A   85 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~--~~~P~~p~~~~~~~~~----~~~~~l~W~~~~~~~---~-~   85 (273)
                      .+.+.+.++.+...|.+++.|.|..|.... ...+..  ..+|.+|.++.+....    ...+.|+|.+|....   + .
T Consensus        61 ~c~~~~~~l~~~~~Y~~~V~A~N~~G~~~s~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~  140 (210)
T 3n06_B           61 SCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWF  140 (210)
T ss_dssp             EEEECGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSC
T ss_pred             EEEeCCCCcccceeEEEEEEEEcCCCCeeCCcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeE
Confidence            455566678889999999999999987644 222222  3578899998887653    578999999886432   2 3


Q ss_pred             ceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC-CCCCcceEEEecCC
Q psy6638          86 ITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM-SETGAELQASTLEE  153 (273)
Q Consensus        86 ~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~-~~~s~~~~~~~~~~  153 (273)
                      ...|+|+|+..+. .|..     ......+.+.+.+|.+++.|.|+|+|.+..|. |.||..+.+.|...
T Consensus       141 ~~~Y~v~y~~~~~~~~~~-----~~~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~~Tp~~  205 (210)
T 3n06_B          141 TLLYEIRLKPEKAAEWEI-----HFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPSD  205 (210)
T ss_dssp             CEEEEEEEECTTCSSCEE-----EEEETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEEECCTT
T ss_pred             EEEEEEEEecCCCCCCEE-----EeccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCceeEECcCC
Confidence            5799999998643 4531     22335678999999999999999999998884 99999999988544

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=6.5e-13  Score=87.19  Aligned_cols=96  Identities=22%  Similarity=0.368  Sum_probs=76.1

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      ..|.+|.++++.... +++.|+|++|...++.+.+|.|+|+... .+.   .........+.+.|.+|.+++.|.|+|+|
T Consensus        16 ~~P~~P~~l~~~~~~-~sv~l~W~~P~~~ng~i~gY~i~y~~~~-~~~---~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A   90 (116)
T 2edb_A           16 QVPDQPSSLHVRPQT-NCIIMSWTPPLNPNIVVRGYIIGYGVGS-PYA---ETVRVDSKQRYYSIERLESSSHYVISLKA   90 (116)
T ss_dssp             SCCCCCSCEEEEECS-SCEEEEECCCSCTTBCCCEEEEEEEESS-TTS---EEEEEETTCCEEEECSCCSSSBEEEEEEE
T ss_pred             CCCCCCCCeEEEECC-CEEEEEEcCCCCCCCceeEEEEEEEeCC-CCe---EEEEeCCCeeEEEeCCCCCCCEEEEEEEE
Confidence            578899999998887 9999999999777788999999998643 222   23345567788999999999999999999


Q ss_pred             eCCCCCCCCCcceEEEecCCCC
Q psy6638         134 ENPLGMSETGAELQASTLEEAP  155 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~~~~p  155 (273)
                      .|..|.|..+. ..+.|....|
T Consensus        91 ~n~~G~g~~~~-~~~~T~~~~P  111 (116)
T 2edb_A           91 FNNAGEGVPLY-ESATTRSITS  111 (116)
T ss_dssp             EETTEECSCEE-ECCBCCCSSS
T ss_pred             EeCCccCCCCc-ceeecccCCC
Confidence            99999887544 4455555544

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.2e-13  Score=91.44  Aligned_cols=100  Identities=30%  Similarity=0.532  Sum_probs=80.6

Q ss_pred             CCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCC-CccceEEEEEEEeCC-CCCCCccceEEecCCccEEEe
Q psy6638          41 HGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSG-NTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATL  118 (273)
Q Consensus        41 ~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~-~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~  118 (273)
                      .|.....+.+.+..+|.+|.++.+.....+++.|+|.+|... +.++.+|.|+++... ..|..    .......+.+.+
T Consensus         3 ~G~~~~~~~v~~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~w~~----~~~~~~~~~~~v   78 (120)
T 2yux_A            3 SGSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFT----VIEHYHRTSATI   78 (120)
T ss_dssp             CCCCCCCCCCCCCCCCCCCSCEEEEEEETTEEEEEECCCSCCCSSCCCCCCEEEEETTTCCCEE----EESSCCSSCCEE
T ss_pred             CCcccEEEEEEeecCCCcCCCCEEEEecCCEEEEEEcCCCcCCCCCceEEEEEEEECCCCceEE----eeecCCcCEEEE
Confidence            455566677777899999999999999999999999998643 367899999999854 45542    122345678899


Q ss_pred             cCCCCCCeEEEEEEEeCCCCCCCCCc
Q psy6638         119 QPLLPATQYQVRLLAENPLGMSETGA  144 (273)
Q Consensus       119 ~~l~~~~~y~~~v~a~~~~g~~~~s~  144 (273)
                      .+|.+++.|.|+|+|.|..|.|.++.
T Consensus        79 ~~L~p~t~Y~frV~A~n~~G~s~~S~  104 (120)
T 2yux_A           79 TELVIGNEYYFRVFSENMCGLSEDAT  104 (120)
T ss_dssp             CCCCSSEEEEEEECCCSSSCSCSSCE
T ss_pred             CCCCCCCEEEEEEEEeeCCcCCCCcc
Confidence            99999999999999999999888765

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B*

Probab=99.47  E-value=1.3e-11  Score=89.67  Aligned_cols=135  Identities=16%  Similarity=0.125  Sum_probs=91.9

Q ss_pred             EEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccC-CceEEEEEeCCCCCCccceeeeEE
Q psy6638         116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVD-PTELLIKWKAPPRESWNGVLLGYD  194 (273)
Q Consensus       116 ~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~-~~~i~l~W~~~~~~~~~~~i~~y~  194 (273)
                      +....+.-...+.|.|..    |. ..+....+.....+.+.||.++.+..  .. ...+.|+|.+|...........|+
T Consensus        78 ~~~~~~~l~~~~~i~V~l----G~-~~S~~~~f~l~~iVKPdPP~nLtv~~--~~~~~~l~LsW~~P~~~~~~~~~L~YE  150 (223)
T 3up1_A           78 IETKKFLLIGKSNICVKV----GE-KSLTCKKIDLTTIVKPEAPFDLSVVY--REGANDFVVTFNTSHLQKKYVKVLMHD  150 (223)
T ss_dssp             EEESCBCCSSEEEEEEEE----TT-EEEEEEEEEGGGSBCCCCCEEEEEEE--ETTTTEEEEEEECGGGGCSSSCCEEEE
T ss_pred             eecCCEEEEeccEEEEEc----CC-ceeccEEEEecceEEcCCCcceEEEE--EcCCCCEEEEECCCCCCCCcceeEEEE
Confidence            344666666778888874    32 22455667777777778999998876  43 567999999996521011257999


Q ss_pred             EEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecC----CCcCCCCccEEEEcCCCCC
Q psy6638         195 VGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS----VGKGPFSEPFIARTNEGDF  264 (273)
Q Consensus       195 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~----~g~~~~s~~~~~~t~~~~P  264 (273)
                      |+|+..+...      .+..... ......+.+.+|.|++.|.|+|+|...    .+.|+||.++.+.|++.+|
T Consensus       151 VrYr~~~~~~------~W~~v~~-~~t~~~i~l~~L~Pgt~Y~vqVR~r~~~~~~G~WSeWS~~~~~~T~~~~P  217 (223)
T 3up1_A          151 VAYRQEKDEN------KWTHVNL-SSTKLTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFRTPEINN  217 (223)
T ss_dssp             EEEEESSCSS------CCEEEEE-SSSEEEEEGGGSCTTCEEEEEEEEEECSSCCBCCCCCCCCEEEECCCCC-
T ss_pred             EEEEeCCCCC------ceEEEEe-cCceeEEeccccCCCcEEEEEEEEeeCCCCCCCCCCCCCCeEEECCCCCC
Confidence            9999874211      1122221 122234667899999999999999975    2358889999999999988

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=99.46  E-value=3.4e-12  Score=81.76  Aligned_cols=91  Identities=24%  Similarity=0.432  Sum_probs=73.9

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCC-CCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM-WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ..|.+|.++++...+.+++.|+|.+|...++.+.+|.|.|...... +.   .....+...+++.|.+|.|++.|.|+|+
T Consensus         6 t~~~~P~~l~v~~~t~~Sv~lsW~~p~~~~g~i~~Y~v~y~~~~~~~~~---~~~~v~~~~ts~~l~~L~p~t~Y~~~V~   82 (103)
T 3t04_D            6 SVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPV---QEFTVPGYYSTATISGLKPGVDYTITVY   82 (103)
T ss_dssp             CCCCCCCSCEEEEEETTEEEEECTTTTTTSCCCCEEEEEEEETTCSSCC---EEEEEETTCCEEEECSCCTTCCEEEEEE
T ss_pred             ccCCCCceeEEEecCCCEEEEEccCCCCCCCccceEEEEEEECCCCCcc---EEEEcCCCcCEEEeCCCCCCCEEEEEEE
Confidence            4688999999999999999999999876667899999999986432 11   2344556778999999999999999999


Q ss_pred             EeCC--CCCCCCCcceEE
Q psy6638         133 AENP--LGMSETGAELQA  148 (273)
Q Consensus       133 a~~~--~g~~~~s~~~~~  148 (273)
                      |.+.  .|.+. +.++.+
T Consensus        83 A~~~~~~G~~~-S~p~~~   99 (103)
T 3t04_D           83 AYDTFFPGYEP-NSPISI   99 (103)
T ss_dssp             EESCCCTTCCC-SCCEEE
T ss_pred             EEeCCCCCCCC-CCCEEE
Confidence            9999  88766 555543

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.46  E-value=3.6e-12  Score=99.39  Aligned_cols=125  Identities=18%  Similarity=0.224  Sum_probs=92.6

Q ss_pred             cEEEEEEeeee-eCCCEEEEEEEEcCCCCcee-EEEEE--EecCCCCCcceEEEEee--ccEEEEEEeCCCC--CCccce
Q psy6638          16 MISELGIANVL-RQDSGTLSCLATNYHGTAEM-TIQLL--VQETPEAPKNIRITEES--SRSLQISWTAPYS--GNTAIT   87 (273)
Q Consensus        16 ~~~~l~i~~~~-~~~~~~y~~~a~n~~g~~~~-~~~~~--~~~~P~~p~~~~~~~~~--~~~~~l~W~~~~~--~~~~~~   87 (273)
                      ....+.|..+. +...|.|+|.|.|..|.... ...+.  ...+|.+|.++.+....  ...+.|+|.+|..  .+..+.
T Consensus       153 ~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~  232 (325)
T 1n26_A          153 QKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRL  232 (325)
T ss_dssp             TEEEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCE
T ss_pred             CCEEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeE
Confidence            34566777665 56889999999999998643 22222  24679999999887764  3589999999864  345678


Q ss_pred             EEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCc
Q psy6638          88 QYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGA  144 (273)
Q Consensus        88 ~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~  144 (273)
                      .|.|+|+... ..|..    .......+.+.+.+|.+++.|.|+|+|.|..|.|.+|.
T Consensus       233 ~Y~V~yr~~~~~~W~~----~~~~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~  286 (325)
T 1n26_A          233 RFELRYRAERSKTFTT----WMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSE  286 (325)
T ss_dssp             EEEEEEEETTCSCCEE----EECGGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCC
T ss_pred             EEEEEEEeCCCCCCEE----EcccCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcC
Confidence            9999999865 35652    22234457889999999999999999999877555544

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.46  E-value=6.1e-13  Score=86.18  Aligned_cols=99  Identities=19%  Similarity=0.245  Sum_probs=70.7

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccc--eeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL--SSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      +|.++++..  .+.++++|.|++|.     +.+.+|.|+|...++...+.  ......... .+...+.++|.+|.|++.
T Consensus        11 ~p~~L~v~~--~T~~Si~LsW~~p~-----g~v~~Y~i~y~~~~~~~~e~~~~~~~~~~~~-v~~~~t~~~l~gL~PgT~   82 (112)
T 2cui_A           11 RLSQLSVTD--VTTSSLRLNWEAPP-----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELM-VPGTRHSAVLRDLRSGTL   82 (112)
T ss_dssp             CCCCCEEES--CCSSCEEEECCCCT-----TSCSEEEEEEECCCCSSSCCCSSCCCCEEEE-EETTCCEEEECSCCTTCE
T ss_pred             CCCceEEEe--ecCCeEEEEECCCC-----CCccEEEEEEEeCCCCccccccccCcceEEE-cCCCcCEEEeCCCCCCCE
Confidence            678999999  89999999999874     46889999999765420000  000011122 234467999999999999


Q ss_pred             EEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         236 YAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       236 Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                      |.|+|+|++..|.|.+. ...++|..++++
T Consensus        83 Y~~~V~A~~~~~~s~p~-~~~~~T~~~~~~  111 (112)
T 2cui_A           83 YSLTLYGLRGPHKADSI-QGTARTLSGPSS  111 (112)
T ss_dssp             EEEEEEEECSSSEEEEE-EEEEECCCCSCC
T ss_pred             EEEEEEEEECCcccCCE-EEEEEECCCCCC
Confidence            99999999987777544 467778776654

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2.6e-13  Score=89.81  Aligned_cols=88  Identities=18%  Similarity=0.232  Sum_probs=69.1

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      +|.+|.++.+..  .+.+++.|.|++|.... ++.+.+|.|+|+..+...       |..+. .......+++.+|.|++
T Consensus        17 ~P~~P~~l~~~~--~~~~sv~l~W~~p~~~g-g~~i~~Y~v~~~~~~~~~-------w~~~~-~~~~~~~~~v~~L~p~t   85 (120)
T 2yux_A           17 RPGPPQIVKIED--VWGENVALTWTPPKDDG-NAAITGYTIQKADKKSME-------WFTVI-EHYHRTSATITELVIGN   85 (120)
T ss_dssp             CCCCCSCEEEEE--EETTEEEEEECCCSCCC-SSCCCCCCEEEEETTTCC-------CEEEE-SSCCSSCCEECCCCSSE
T ss_pred             CCCcCCCCEEEE--ecCCEEEEEEcCCCcCC-CCCceEEEEEEEECCCCc-------eEEee-ecCCcCEEEECCCCCCC
Confidence            446888888877  78899999999997632 357999999999875432       22222 12345789999999999


Q ss_pred             eEEEEEEEecCCCcCCCCc
Q psy6638         235 KYAIVVRGYNSVGKGPFSE  253 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~  253 (273)
                      .|.|+|+|.|..|.|++|.
T Consensus        86 ~Y~frV~A~n~~G~s~~S~  104 (120)
T 2yux_A           86 EYYFRVFSENMCGLSEDAT  104 (120)
T ss_dssp             EEEEEECCCSSSCSCSSCE
T ss_pred             EEEEEEEEeeCCcCCCCcc
Confidence            9999999999999998875

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.46  E-value=6.2e-13  Score=83.88  Aligned_cols=88  Identities=19%  Similarity=0.281  Sum_probs=66.6

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++++..  .+.+++.|+|++|.     +.+.+|.|+|+..+...       .............++|.+|+|++.|.
T Consensus         4 ~P~~l~~~~--~~~~si~lsW~~p~-----~~i~~Y~v~y~~~~~~~-------~~~~~~~~~~~~~~~l~~L~p~t~Y~   69 (94)
T 1j8k_A            4 RPKGLAFTD--VDVDSIKIAWESPQ-----GQVSRYRVTYSSPEDGI-------HELFPAPDGEEDTAELQGLRPGSEYT   69 (94)
T ss_dssp             CCCCCEEEE--EETTEEEEECCCCS-----SCCSCEEEEEEETTTEE-------EEECCCCCSSCCEEEECSCCCCSEEE
T ss_pred             CCCccEEEe--ecCCEEEEEEcCCC-----CCcceEEEEEEeCCCCC-------ceEEecCCCCccEEEeCCCCCCCEEE
Confidence            566888877  88999999999985     46889999998865321       01111223446799999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEcC
Q psy6638         238 IVVRGYNSVGKGPFSEPFIARTN  260 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t~  260 (273)
                      |+|+|+|..|.|.++ ...+.|.
T Consensus        70 ~~V~A~~~~g~s~p~-~~~~~T~   91 (94)
T 1j8k_A           70 VSVVALHDDMESQPL-IGTQSTA   91 (94)
T ss_dssp             EEEEECSSSCCCCCE-EEEEECC
T ss_pred             EEEEEEcCCCcCCCE-EeEEEec
Confidence            999999999988766 3555554

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.45  E-value=8.7e-13  Score=85.97  Aligned_cols=91  Identities=21%  Similarity=0.400  Sum_probs=72.4

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..+|.+|.++++...+.+++.|+|.++.. ++.++.+|.|+++..+ ..|.....   .....+.+.+.+|.+++.|.|+
T Consensus         6 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~w~~~~~---~~~~~~~~~v~~L~p~t~Y~fr   82 (111)
T 1x5y_A            6 SGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANK---EPVERCGFTVKDLPTGARILFR   82 (111)
T ss_dssp             CSCCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSS---SCBSSSEEEEECCCTTCCEEEE
T ss_pred             CCCCcCCCCCEEEeccCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEccc---cCCcccEEEECCCCCCCEEEEE
Confidence            35788999999999999999999998864 3446999999998854 34542111   1234678999999999999999


Q ss_pred             EEEeCCCCCCCCCcce
Q psy6638         131 LLAENPLGMSETGAEL  146 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~  146 (273)
                      |+|.|..|.+.++...
T Consensus        83 V~A~n~~G~s~~S~~~   98 (111)
T 1x5y_A           83 VVGVNIAGRSEPATLL   98 (111)
T ss_dssp             EEEEETTEECCCCCCS
T ss_pred             EEEEcCCcCCCCccCC
Confidence            9999999988887655

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.1e-12  Score=87.65  Aligned_cols=99  Identities=20%  Similarity=0.289  Sum_probs=70.7

Q ss_pred             CCCCCe-eEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCc----cceeeeeeeEEecCCcccEEEcCC
Q psy6638         155 PNGAPR-EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSL----ALSSYTLKSVELDNQYEGELRIPG  229 (273)
Q Consensus       155 p~~~p~-~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~  229 (273)
                      +|.+|. ++.+..  .+.++++|.|++|..   ++ +.+|.+.|+.......    ......|.....  .....+++.+
T Consensus        15 ~P~~P~~~~~~~~--~~~~sv~L~W~~p~~---~g-~~~Y~~~Y~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~v~g   86 (127)
T 2dmk_A           15 APNPPSIREELCT--ASHDTITVHWISDDE---FS-ISSYELQYTIFTGQANFISLYNSVDSWMIVPN--IKQNHYTVHG   86 (127)
T ss_dssp             SCCCCEEEEEEEE--EETTEEEEEEECSCC---SS-EEEEEEEEEEESCCSCHHHHHHTGGGSEEEEE--ECSSEEEEES
T ss_pred             CCcCCCCCCEEEe--eeCCEEEEEECCCCC---CC-ccceEEEEEEecccccccccccCCCCcEEeec--ccCCeEEECC
Confidence            446777 788877  789999999999986   33 7889999886221000    000001122211  2247899999


Q ss_pred             CCccceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         230 LTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       230 L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      |+|++.|.|+|+|+|..|. .+|..+.++|.+.
T Consensus        87 L~p~t~Y~frV~A~N~~G~-~~S~~v~~~T~~~  118 (127)
T 2dmk_A           87 LQSGTRYIFIVKAINQAGS-RNSEPTRLKTNSQ  118 (127)
T ss_dssp             CCSSCEEEEEEEEEESSCE-EECCCEEEECCSS
T ss_pred             CCCCCEEEEEEEEEeCCCC-CCCcCeEeEeCCC
Confidence            9999999999999999999 5888899999764

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.44  E-value=1.3e-12  Score=87.08  Aligned_cols=87  Identities=28%  Similarity=0.377  Sum_probs=71.5

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      +|.+|.++++.... +++.|+|++|...++.+.+|.|+|+.....    ..........+.+.|.+|.+++.|.|+|+|.
T Consensus        27 ~P~~P~~l~~~~~~-~sv~l~W~~P~~~~g~i~~Y~v~y~~~~~~----~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~  101 (126)
T 1x5i_A           27 VPEVPSSLHVRPLV-TSIVVSWTPPENQNIVVRGYAIGYGIGSPH----AQTIKVDYKQRYYTIENLDPSSHYVITLKAF  101 (126)
T ss_dssp             CCCSCSEEEEEEET-TEEEEEEECCSCTTBCCCEEEEEECSSCGG----GEEEECCTTCCEEEECSCCSSCEECCEEEEE
T ss_pred             CCCCCCeeEEEecC-CEEEEEEcCCCCCCCCEeEEEEEEEcCCCC----ceEEEeCCCeeEEEEeCCCCCCEEEEEEEEE
Confidence            78999999998886 999999999977778899999999842211    1233455677889999999999999999999


Q ss_pred             CCCCCCCCCcce
Q psy6638         135 NPLGMSETGAEL  146 (273)
Q Consensus       135 ~~~g~~~~s~~~  146 (273)
                      |..|.+.++...
T Consensus       102 n~~G~g~~s~~~  113 (126)
T 1x5i_A          102 NNVGEGIPLYES  113 (126)
T ss_dssp             CSSCBCCCCCCC
T ss_pred             eCCccCcceeeE
Confidence            999998877643

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*

Probab=99.44  E-value=4.8e-13  Score=87.25  Aligned_cols=96  Identities=23%  Similarity=0.289  Sum_probs=69.0

Q ss_pred             CCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      |.+|.++.+..  .+.+++.|+|.+|.     +.+.+|.|.|+..++...      ..... .+...+.++|.+|.|++.
T Consensus         4 P~~P~~L~v~~--~t~~Sv~lsW~~p~-----g~i~~Y~v~y~~~~~~~~------~~~~~-v~~~~ts~~l~gL~P~T~   69 (114)
T 3qwq_B            4 SDVPRDLEVVA--ATPTSLLISWDSGR-----GSYQYYRITYGETGGNSP------VQEFT-VPGPVHTATISGLKPGVD   69 (114)
T ss_dssp             -CCCEEEEEEE--EETTEEEEEEECCS-----CCCSEEEEEEEESSCSSC------CEEEE-EETTCCEEEECSCCTTCE
T ss_pred             CCCCCceEEEe--cCCCEEEEEEcCCc-----CcccEEEEEEEECCCCCc------cEEEE-eCCCcCEEEeCCCCCCCE
Confidence            35888999988  89999999999973     578999999998765321      01112 233467999999999999


Q ss_pred             EEEEEEEecCCC---------cCCCCccEEEEcCCCCCcc
Q psy6638         236 YAIVVRGYNSVG---------KGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       236 Y~~~v~a~n~~g---------~~~~s~~~~~~t~~~~P~~  266 (273)
                      |.|+|+|.+..|         .+.+. .+.|+|..+.|+.
T Consensus        70 Y~v~V~A~~~~G~~~~~~~T~~~~P~-~l~~~T~~~~~~~  108 (114)
T 3qwq_B           70 YTITVYAVTDHKPHADGPHTYHESPI-SINYRTEIDKPSQ  108 (114)
T ss_dssp             EEEEEEEEEEEESSTTSCCEEEEEEE-EEEEECCCC----
T ss_pred             EEEEEEEEECCccEEEEeEcCCCCCc-eeEEEeccCCccc
Confidence            999999999988         22222 3667887777653

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=3.3e-13  Score=86.77  Aligned_cols=93  Identities=20%  Similarity=0.377  Sum_probs=75.5

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCC--CCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAP--YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~--~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      .+|.+|.++.+......++.|+|.++  ...++.+.+|.|+++..+..     .........+.+.+.+|.|++.|.|+|
T Consensus         7 ~pp~~P~~l~~~~~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~-----~~~~~~~~~~~~~i~~L~p~t~Y~~~V   81 (103)
T 2edy_A            7 GPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQ-----QELQNITTDTRFTLTGLKPDTTYDIKV   81 (103)
T ss_dssp             CCSCCCEEEECSSBCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSC-----CEEEEEESSSCCEECSCCTTCCEEEEC
T ss_pred             CCCCCCeeeEEEecCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCC-----ccEEEcCCcceEEEcCCCCCCEEEEEE
Confidence            45678999988888889999999998  45667899999999886542     122333456788999999999999999


Q ss_pred             EEeCCCCCCCCCcceEEEec
Q psy6638         132 LAENPLGMSETGAELQASTL  151 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~  151 (273)
                      +|.|..|.|.++..+.++|.
T Consensus        82 ~A~n~~G~g~~S~~~~~~T~  101 (103)
T 2edy_A           82 RAWTSKGSGPLSPSIQSRTM  101 (103)
T ss_dssp             CEECSSCBCCCCCCCCCCCC
T ss_pred             EEECCCCCCCCCCCEEEEec
Confidence            99999999998887777663

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.44  E-value=4e-12  Score=82.05  Aligned_cols=93  Identities=19%  Similarity=0.337  Sum_probs=74.8

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEE--eCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISW--TAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W--~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      +.+|.+|.++++.....+++.|+|  .+|...++. .+|.|+|+.....     .....  ..+.+.|.+|.|++.|.|+
T Consensus         7 ~~~P~~p~~l~~~~~~~~sv~l~W~~~~P~~~ng~-~~Y~v~y~~~~~~-----~~~~~--~~~~~~i~~L~p~t~Y~f~   78 (107)
T 1x5a_A            7 GAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGN-LSYELHVLNQDEE-----WHQMV--LEPRVLLTKLQPDTTYIVR   78 (107)
T ss_dssp             TCCCCCSCCCCEEEEETTEEEEECCCCCSSCCSSC-CEEEEEEECSSCE-----EEEEE--SSSEEEEESCCSSCEEEEE
T ss_pred             CCCCCCCCceEEEecCCCEEEEEECCCCCCCCCCc-eEEEEEEEeCCCC-----ceEEE--ecceEEECCCCCCCEEEEE
Confidence            457888999999999999999999  888766666 8999999875111     11111  2233899999999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEecCC
Q psy6638         131 LLAENPLGMSETGAELQASTLEE  153 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~~~  153 (273)
                      |+|.+..|.|.++..+.+.+...
T Consensus        79 V~A~~~~G~g~~S~~~~~~T~~~  101 (107)
T 1x5a_A           79 VRTLTPLGPGPFSPDHEFRTSPP  101 (107)
T ss_dssp             EEEECSSSCCCCCCCEEEECCCC
T ss_pred             EEEECCCccCCCCCCEEEEECCC
Confidence            99999999999999999888654

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.5e-14  Score=92.24  Aligned_cols=96  Identities=23%  Similarity=0.347  Sum_probs=74.0

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      ++.+|.++++..  .+.+++.|+|++|.     +.+.+|.|+|+..+....      ..... .....+.++|.+|+|++
T Consensus         7 ~p~~P~~l~v~~--~t~~si~lsW~~p~-----g~i~~Y~v~y~~~~~~~~------~~~~~-v~~~~~~~~l~~L~p~t   72 (105)
T 2ekj_A            7 GRSPPSNLALAS--ETPDSLQVSWTPPL-----GRVLHYWLTYAPASGLGP------EKSVS-VPGARSHVTLPDLQAAT   72 (105)
T ss_dssp             TCCCCEEEEEEE--EETTEEEEEEECCS-----SCCSBBCBBCCCTTSCSC------CCCBC-CBTTSSEEEECSCCSSC
T ss_pred             CCCCCCceEEEe--CCCCEEEEEEeCCC-----CcceEEEEEEEECCCCCc------cEEEE-eCCCcCEEEeCCCCCCC
Confidence            445888999988  89999999999983     578999999987644210      01111 23346899999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEcC-CCCCc
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIARTN-EGDFL  265 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t~-~~~P~  265 (273)
                      .|.|+|+|+|..|.|+.+. ..++|. ++.|.
T Consensus        73 ~Y~~~V~A~~~~g~g~~s~-~~~~T~~p~~P~  103 (105)
T 2ekj_A           73 KYRVLVSAIYAAGRSEAVS-ATGQTACPSGPS  103 (105)
T ss_dssp             CCBCBBCBBCSSCBCCCBC-CBCCCCCCCCCC
T ss_pred             EEEEEEEEEeCCccCCccc-cEEEccCCCCCC
Confidence            9999999999999998875 456776 77665

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.8e-12  Score=86.18  Aligned_cols=100  Identities=19%  Similarity=0.230  Sum_probs=77.0

Q ss_pred             cCCC-CCcceEEE-EeeccEEEEEEeCC--CCCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEE
Q psy6638          54 ETPE-APKNIRIT-EESSRSLQISWTAP--YSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQ  128 (273)
Q Consensus        54 ~~P~-~p~~~~~~-~~~~~~~~l~W~~~--~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~  128 (273)
                      ..|. +|.++++. ..+.+++.|+|++|  ...++.+.+|.|+|+... ....  ..........+.+.|.+|.+++.|.
T Consensus        16 ~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~~~--~~~~~~~~~~~~~~l~~L~p~t~Y~   93 (124)
T 2dbj_A           16 GAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISK--ELLEEVGQNGSRARISVQVHNATCT   93 (124)
T ss_dssp             CCCCSCCEEEEEEECSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTEEE--EEEEEEESTTSCEEEECCCSSSEEE
T ss_pred             CCCCCCCcceEEEecCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCCcc--ceEEEeCCCcceEEecCCCCCCEEE
Confidence            4554 88888887 47789999999998  556778999999997432 1100  0111234566789999999999999


Q ss_pred             EEEEEeCCCCCCCCCcceEEEecCCCC
Q psy6638         129 VRLLAENPLGMSETGAELQASTLEEAP  155 (273)
Q Consensus       129 ~~v~a~~~~g~~~~s~~~~~~~~~~~p  155 (273)
                      |+|+|.|..|.|.++..+.+.+.+...
T Consensus        94 ~~V~A~n~~G~Gp~S~~~~~~T~~~~~  120 (124)
T 2dbj_A           94 VRIAAVTRGGVGPFSDPVKIFIPAHSG  120 (124)
T ss_dssp             ECEEEEESSCBCCCCCCEEEECCCSCC
T ss_pred             EEEEEECCCccCCCCCCEEEEcCCCCC
Confidence            999999999999999999999876543

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}

Probab=99.44  E-value=3e-13  Score=85.80  Aligned_cols=82  Identities=27%  Similarity=0.409  Sum_probs=64.4

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|.++.+..  .+.+++.|+|++|.     +.+.+|.|.|+..++...      ..... .+.....++|.+|+|++.|
T Consensus         6 ~~P~~l~v~~--~t~~Si~lsW~~p~-----~~i~~Y~v~y~~~~~~~~------~~~~~-v~~~~t~~~l~~L~p~t~Y   71 (97)
T 3qht_C            6 SVPTKLEVVA--ATPTSLLISWDASS-----SSVSYYRITYGETGGNSP------VQEFT-VPGSSSTATISGLSPGVDY   71 (97)
T ss_dssp             CSSSSCEEEE--EETTEEEEECCCCC-----SSCCEEEEEEEESSSCSC------CEEEE-EETTCCEEEECSCCTTCEE
T ss_pred             CCCCceEEEe--cCCCEEEEEEeCCC-----CCCCEEEEEEEECCCCCc------cEEEE-eCCCcCEEEeCCCCCCCEE
Confidence            4788898888  89999999999973     468899999998755321      11122 2334679999999999999


Q ss_pred             EEEEEEecCCCcCCCC
Q psy6638         237 AIVVRGYNSVGKGPFS  252 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s  252 (273)
                      .|+|+|++..|.|+.+
T Consensus        72 ~v~V~A~~~~G~gp~s   87 (97)
T 3qht_C           72 TITVYAYYSYYDLYYS   87 (97)
T ss_dssp             EEEEEEEEEETTEEEE
T ss_pred             EEEEEEEeCCccCCCC
Confidence            9999999999998654

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.44  E-value=1.4e-12  Score=86.07  Aligned_cols=92  Identities=20%  Similarity=0.324  Sum_probs=75.1

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ...|.+|.++++......++.|+|.+|...++.+.+|.|+|+.......  ..........+.+.+.+|.+++.|.|+|+
T Consensus        15 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   92 (119)
T 1wfn_A           15 EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNT--RVTHYLPNVTLEYRVTGLTALTTYTIEVA   92 (119)
T ss_dssp             CCSCCCCSCCEEESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSCGGG--CCCEEECSSCCEEEEESCCTTCEEEEEEE
T ss_pred             CCCCCCCCceEEEECCCCEEEEEEcCCCCCCCcEEEEEEEEEECCCCCc--eEEEEeCCCceEEEEcCCCCCCEEEEEEE
Confidence            4578889999998889999999999988777789999999998653210  11234556778899999999999999999


Q ss_pred             EeCCCCCCCCCcce
Q psy6638         133 AENPLGMSETGAEL  146 (273)
Q Consensus       133 a~~~~g~~~~s~~~  146 (273)
                      |.|..|.|.++..+
T Consensus        93 A~n~~G~g~~S~~~  106 (119)
T 1wfn_A           93 AMTSKGQGQVSAST  106 (119)
T ss_dssp             EECSSCEEEEEEEE
T ss_pred             EEcCCccCCCCCCE
Confidence            99999988877755

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.1e-12  Score=85.32  Aligned_cols=100  Identities=20%  Similarity=0.293  Sum_probs=75.7

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..+|.+|.++++.....+++.|.|.++.. ++.++.+|.|+++..+. .|.....   .....+.+.+.+|.+++.|.|+
T Consensus         5 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~---~~~~~~~~~v~~L~p~t~Y~fr   81 (110)
T 2yuw_A            5 SSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANK---DLIDKTKFTITGLPTDAKIFVR   81 (110)
T ss_dssp             CCCSCCCEEEEEEEECSSCEEEEEECCSSCCSSCEEEEEEEEEETTCSSEEECCS---SCCCSSEEEECSCCTTCEEEEE
T ss_pred             CCCCCCCCccEEEeccCCeEEEEECCCCCCCCCCccEEEEEEEECCCccceEecc---ccCccCEEEECCCCCCCEEEEE
Confidence            35788999999998899999999998864 44578999999998643 4431111   1235678999999999999999


Q ss_pred             EEEeCCCCCCCCCcceE-EEecCCCC
Q psy6638         131 LLAENPLGMSETGAELQ-ASTLEEAP  155 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~-~~~~~~~p  155 (273)
                      |+|.|..|.+.++.... +.+.+.+|
T Consensus        82 V~A~n~~G~s~~S~~~~~v~~~~~~P  107 (110)
T 2yuw_A           82 VKAVNAAGASEPKYYSQPILVKESGP  107 (110)
T ss_dssp             EEEEETTEECCCEECSSCEECCCCCC
T ss_pred             EEEEcCCcCCCCcCCCCCEEecCCCC
Confidence            99999999988876553 44433333

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.43  E-value=1.3e-12  Score=87.23  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=83.5

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCC-Cc------c--ceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCC
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSG-NT------A--ITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPA  124 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~-~~------~--~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  124 (273)
                      ..|.....+.+..++.+++.|+|.+|... ++      .  +..|+|.|...+...   .......+..+++.|.+|+|+
T Consensus        16 ~~~s~v~~p~v~~i~s~S~~LsW~~P~~~~~g~~~~~g~~~i~~Yev~~~~k~~~~---~~~~~~~g~~ts~~v~~L~P~   92 (137)
T 1wk0_A           16 ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDG---KYKSVYVGEETNITLNDLKPA   92 (137)
T ss_dssp             HHTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTS---CCEEEEEESCSEEEECSCCTT
T ss_pred             hccCCCCCcEEEEEccCEEEEEECCCCCccCccccccccCccEEEEEEEEecCCCC---ceEEEEecCccEEEEcCCCCC
Confidence            45667777888889999999999987643 22      2  579999997654321   122334567789999999999


Q ss_pred             CeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecC
Q psy6638         125 TQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP  166 (273)
Q Consensus       125 ~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~  166 (273)
                      +.|.|+|+|.|..|.|.++..+.|+|....|. +|..+++..
T Consensus        93 T~Y~~rV~A~n~~G~G~~S~~~~f~T~~~~P~-~P~~p~l~~  133 (137)
T 1wk0_A           93 MDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD-IPNPPRISG  133 (137)
T ss_dssp             CEECEEEEEEETTEECCCCCCCCEECCCSSSC-CCSCSCCCS
T ss_pred             CEEEEEEEEEeCCCcCCCCCCEEEECCCCCCC-CCCCCEEeC
Confidence            99999999999999999999999999887763 555555543

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.43  E-value=5.2e-12  Score=91.47  Aligned_cols=122  Identities=18%  Similarity=0.265  Sum_probs=90.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeE-EEEEEe------------cCCCC-C----cceEEEEeeccEEEEEEe
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMT-IQLLVQ------------ETPEA-P----KNIRITEESSRSLQISWT   77 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~-~~~~~~------------~~P~~-p----~~~~~~~~~~~~~~l~W~   77 (273)
                      ....+.|.+|.++..|.|++.|.|..|..... +.+...            ..|.+ |    .++.+.....+++.|+|.
T Consensus        54 ~~~~~~i~~L~p~t~Y~~~V~a~n~~G~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~  133 (201)
T 2ha1_A           54 HLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWV  133 (201)
T ss_dssp             TCCEEEECSCCTTEEEEEEEEEECTTSCEEEEEEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECC
T ss_pred             CccEEEecCCCCCCEEEEEEEEEecccccCceeEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEe
Confidence            35689999999999999999999998887643 111111            11222 2    355677778899999999


Q ss_pred             CCCCCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCC
Q psy6638          78 APYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETG  143 (273)
Q Consensus        78 ~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s  143 (273)
                      ++   .+.+.+|.|+|+... ..|.   .....+...+.+.+.+|.|++.|.|+|+|.|..|.+.+.
T Consensus       134 ~p---~~~i~~Y~v~~~~~~~~~~~---~~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~  194 (201)
T 2ha1_A          134 SA---SDTVSGFRVEYELSEEGDEP---QYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLI  194 (201)
T ss_dssp             CS---CTTEEEEEEEEEETTTCCCC---EEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEE
T ss_pred             CC---CCCccEEEEEEEECCCCCce---eEEEcCCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccE
Confidence            87   237899999998753 3332   233456677899999999999999999999999876543

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.43  E-value=4.8e-13  Score=90.12  Aligned_cols=98  Identities=30%  Similarity=0.453  Sum_probs=79.1

Q ss_pred             ecCCC-CCcceEEEEeeccEEEEEEeCCCC--CCccceEEEEEEEeCCCC-CCCccceEEecCCccEEEecCCCCCCeEE
Q psy6638          53 QETPE-APKNIRITEESSRSLQISWTAPYS--GNTAITQYIIQYKSSEEM-WPTQPLKIIVPGSQTSATLQPLLPATQYQ  128 (273)
Q Consensus        53 ~~~P~-~p~~~~~~~~~~~~~~l~W~~~~~--~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~y~  128 (273)
                      ...|. +|.++++.....+++.|+|.++..  .++.+.+|.|+|+..... |.   .........+.+.|.+|.+++.|.
T Consensus        15 ~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~   91 (132)
T 1x5h_A           15 SDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDV---TETLVSGTQLSQLIEGLDRGTEYN   91 (132)
T ss_dssp             CSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEE---ECCBCCTTCCEEEEECCCSSCEEE
T ss_pred             CCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCcc---EEEEeCCCccEEEeCCCCCCCEEE
Confidence            34565 788999888899999999999875  677899999999876431 11   011244567889999999999999


Q ss_pred             EEEEEeCCCCCCCCCcceEEEecCC
Q psy6638         129 VRLLAENPLGMSETGAELQASTLEE  153 (273)
Q Consensus       129 ~~v~a~~~~g~~~~s~~~~~~~~~~  153 (273)
                      |+|+|.|..|.|.++..+.++|...
T Consensus        92 ~~V~A~n~~G~g~~S~~~~~~T~~~  116 (132)
T 1x5h_A           92 FRVAALTINGTGPATDWLSAETFES  116 (132)
T ss_dssp             EECEEEETTEEEEECCCEEEECCSS
T ss_pred             EEEEEEcCCccCCCCcCEEeEcCcc
Confidence            9999999999999999999998775

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic}

Probab=99.43  E-value=2.3e-12  Score=81.94  Aligned_cols=82  Identities=24%  Similarity=0.446  Sum_probs=64.2

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|.++.+..  .+.+++.|+|.+|.     +.+.+|.|+|+..++...      +.... .......++|.+|.|++.|
T Consensus         3 ~~P~~l~v~~--~~~~sv~l~W~~p~-----~~i~~Y~v~y~~~~~~~~------~~~~~-~~~~~~~~~i~~L~p~t~Y   68 (98)
T 3teu_A            3 DAPTDLQVTN--VTDTSITVSWTPPS-----ATITGYRITYTPSNGPGE------PKELT-VPPSSTSVTITGLTPGVEY   68 (98)
T ss_dssp             CCCEEEEEEE--ECSSCEEEEEECCS-----SCCSEEEEEEEETTSCSC------CEEEE-ECTTCSEEEECSCCTTCEE
T ss_pred             CCCCceEEEE--ecCCEEEEEEeCCC-----CcccEEEEEEEECCCCCc------eEEEE-cCCCcCEEEecCCCCCCEE
Confidence            4778888887  88999999999983     578899999997643221      11222 2344689999999999999


Q ss_pred             EEEEEEecCCCcCCCC
Q psy6638         237 AIVVRGYNSVGKGPFS  252 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s  252 (273)
                      .|+|+|.|..|.|+++
T Consensus        69 ~~~V~A~n~~G~s~p~   84 (98)
T 3teu_A           69 VVSVYALKDNQESPPL   84 (98)
T ss_dssp             EEEEEEEETTEECCCE
T ss_pred             EEEEEEEeCCCCCCCe
Confidence            9999999999988765

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.42  E-value=4.6e-12  Score=81.50  Aligned_cols=95  Identities=24%  Similarity=0.362  Sum_probs=75.0

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ..+|.+|.++++...+.+++.|+|.+|.   +.+.+|.|.|+..++.|.    ........+++.|.+|.|++.|.|+|+
T Consensus         5 ~t~p~~P~~l~v~~~~~~sv~lsW~~p~---~~i~~Y~i~y~~~~~~~~----~~~~~~~~ts~~l~~L~p~t~Y~~~V~   77 (105)
T 2cum_A            5 SSGLEAPRDLEAKEVTPRTALLTWTEPP---VRPAGYLLSFHTPGGQTQ----EILLPGGITSHQLLGLFPSTSYNARLQ   77 (105)
T ss_dssp             CTTCCCCEEEEEESCCSSCEEEEEECCS---SCCSEEEEEEECTTSCEE----EEEECSSCSEEEECSCCTTCEEEEEEE
T ss_pred             ccCCCCCCceEEEeccCCEEEEEEcCCC---CccceEEEEEEeCCCceE----EEEECCCccEEEECCCCCCCEEEEEEE
Confidence            3578899999999999999999999874   368899999987654433    234556778999999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCC
Q psy6638         133 AENPLGMSETGAELQASTLEEAP  155 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p  155 (273)
                      |.+..|.+.+. ...+.|.....
T Consensus        78 A~~~~g~s~~~-~~~~~T~~~~~   99 (105)
T 2cum_A           78 AMWGQSLLPPV-STSFTTGGLRI   99 (105)
T ss_dssp             EEBTTBCCCCE-EEEEECCCSCC
T ss_pred             EEeCCcccCCE-EEEEEeCCcCC
Confidence            99998877653 35666654433

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=9.7e-13  Score=85.49  Aligned_cols=94  Identities=22%  Similarity=0.322  Sum_probs=71.7

Q ss_pred             CCCCCc-ceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          55 TPEAPK-NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        55 ~P~~p~-~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      +|.+|. .+.....+.+++.|+|+++...++++.+|.|+++... ..|.     .......+.+.+.+|.+++.|.|||+
T Consensus         9 ~P~~P~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~-----~~~~~~~~~~~v~~L~p~t~Y~frV~   83 (110)
T 2db8_A            9 VPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFR-----EVYVGKETMCTVDGLHFNSTYNARVK   83 (110)
T ss_dssp             CCCCCBCCCCCCSCSSSEEEECCBCCTTCCSCCSEEEEEECCSSSSCCE-----EEEEESCSCEEEECCCSSSCCEEEEE
T ss_pred             CCCCccccceeeccCCCEEEEEECCCCCCCCCccEEEEEEEeCCCCceE-----EEEeCCcCEEEECCCCCCCEEEEEEE
Confidence            344443 3333345689999999998766678999999998754 3454     12233567899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCC
Q psy6638         133 AENPLGMSETGAELQASTLEE  153 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~  153 (273)
                      |.|..|.+.++..+.+.|...
T Consensus        84 A~n~~G~s~~S~~~~~~T~~~  104 (110)
T 2db8_A           84 AFNKTGVSPYSKTLVLQTSEG  104 (110)
T ss_dssp             EECSSCBCCCCSCEECCCCCC
T ss_pred             EEeCCcCCCCCCCEEEEcCCC
Confidence            999999999999888887654

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1

Probab=99.42  E-value=6e-12  Score=78.24  Aligned_cols=85  Identities=22%  Similarity=0.354  Sum_probs=67.0

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      +|.+|.++.+..  .+..++.|.|+++.+   ++.+.+|.|++  .+ .       .+..   .  ....+++.+|.+++
T Consensus         3 ~P~~P~~l~~~~--~~~~sv~L~W~~~~~---~~~i~~Y~v~~--~~-~-------~~~~---~--~~~~~~~~~L~~~t   62 (88)
T 1k85_A            3 APTAPTNLASTA--QTTSSITLSWTASTD---NVGVTGYDVYN--GT-A-------LATT---V--TGTTATISGLAADT   62 (88)
T ss_dssp             SCCCCEEEEEEE--ECSSCEEEEEECCSC---CSSEEEEEEEE--SS-S-------EEEE---E--SSSEEEECCCCSSC
T ss_pred             CcCCCCccEEEe--ccCCEEEEEECCCCC---CCCccEEEEEE--CC-E-------EEee---c--CCCEEEeCCCCCCC
Confidence            446888999887  789999999999875   44588999984  21 1       1111   1  13689999999999


Q ss_pred             eEEEEEEEecCCCc-CCCCccEEEEc
Q psy6638         235 KYAIVVRGYNSVGK-GPFSEPFIART  259 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~-~~~s~~~~~~t  259 (273)
                      .|.|+|+|+|..|. |++|..+.++|
T Consensus        63 ~Y~~~V~A~n~~G~~s~~S~~v~v~T   88 (88)
T 1k85_A           63 SYTFTVKAKDAAGNVSAASNAVSVKT   88 (88)
T ss_dssp             EEEEEEEEEETTTEECCCCCCEEEEC
T ss_pred             EEEEEEEEEeCCCCcCCCCCCEEEEC
Confidence            99999999999998 88898888875

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=3.7e-12  Score=82.03  Aligned_cols=91  Identities=26%  Similarity=0.345  Sum_probs=73.3

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      .++.+|.++.+...+.+++.|+|.++.   +.+.+|+|.|....+.+.   ....+++..+++.|.+|.|++.|.|+|.|
T Consensus         6 ~p~~pP~~l~~~~vt~tsi~vsW~pp~---~~i~~Y~I~y~~~~~~~~---~~~~v~~~~t~~~l~~L~p~T~Y~v~V~A   79 (108)
T 2ee3_A            6 SGLAPPRHLGFSDVSHDAARVFWEGAP---RPVRLVRVTYVSSEGGHS---GQTEAPGNATSAMLGPLSSSTTYTVRVTC   79 (108)
T ss_dssp             CCCCCSSCEEEESCCSSCEEEEESCCS---SCCSEEEEEEEETTTCCB---CCEEEETTCCEEEECSCCSSCEEEEEEEE
T ss_pred             cCCCCCceEEEEEccCCeEEEEeeCCC---CCccEEEEEEEeCCCCce---eEEEcCCCcCEEEcCCCCCCCEEEEEEEE
Confidence            466799999999999999999999873   478999999988654322   23345667789999999999999999999


Q ss_pred             eCCCCCCCCCcceEEEec
Q psy6638         134 ENPLGMSETGAELQASTL  151 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~  151 (273)
                      .|..|.+..+.. .+.|.
T Consensus        80 ~~~~g~s~p~~~-~~~T~   96 (108)
T 2ee3_A           80 LYPGGGSSTLTG-RVTTK   96 (108)
T ss_dssp             ECTTSCEEEEEE-EEECC
T ss_pred             EeCCCcCCCccC-EEEeC
Confidence            999998776653 56665

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.40  E-value=1.5e-12  Score=84.64  Aligned_cols=94  Identities=20%  Similarity=0.338  Sum_probs=74.2

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCC-CCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPY-SGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      .+|.+|..+.+...+.+++.|+|.+|. +++.++.+|.|+++..+ ..|.....   .....+.+.+.+|.+++.|.|||
T Consensus         9 ~~p~~P~~P~v~~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~~~w~~~~~---~~~~~~~~~v~~L~p~t~Y~frV   85 (112)
T 1bpv_A            9 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANF---SNILENEFTVSGLTEDAAYEFRV   85 (112)
T ss_dssp             CCCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCC---SCCCSSEEEECSCCSSCCEEEEE
T ss_pred             CCCCCCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeec---ccCccCEEEECCCCCCCEEEEEE
Confidence            567888888899999999999999765 45567999999999864 45652111   12356789999999999999999


Q ss_pred             EEeCCCCC-CCCCcceEEEe
Q psy6638         132 LAENPLGM-SETGAELQAST  150 (273)
Q Consensus       132 ~a~~~~g~-~~~s~~~~~~~  150 (273)
                      +|.|..|. |.++..+...+
T Consensus        86 ~A~N~~G~~s~~S~~~~~~t  105 (112)
T 1bpv_A           86 IAKNAAGAISPPSEPSDAIT  105 (112)
T ss_dssp             EEECTTSCEEEEEEEEEEEC
T ss_pred             EEEECCCCCCCCCCCCCCEE
Confidence            99999996 88877665554

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.40  E-value=5e-12  Score=82.97  Aligned_cols=97  Identities=16%  Similarity=0.316  Sum_probs=75.7

Q ss_pred             ecCCC-CCcceEEEEeeccEEEEEEeCC--CCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEE
Q psy6638          53 QETPE-APKNIRITEESSRSLQISWTAP--YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQV  129 (273)
Q Consensus        53 ~~~P~-~p~~~~~~~~~~~~~~l~W~~~--~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~  129 (273)
                      ..+|. +|.++++.. ..+.+.|+|++|  ...++.+.+|.|.|+.......     .......+.+.+. |.+++.|.|
T Consensus        15 e~~P~~~P~~v~~~~-~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~~-----~~~~~~~~~~~~~-L~~~t~Y~~   87 (117)
T 1wj3_A           15 KTPPSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNV-----QVLNTNKTSAELV-LPIKEDYII   87 (117)
T ss_dssp             CCCCCCCCCSCBCCE-ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSC-----EEEEESSSEEEEE-CCCSSCEEE
T ss_pred             CCCCCCCCccEEEEE-eCCEEEEEEcCCCccccCCceeEEEEEEEECCCCCC-----eEEeCCCcEEEEE-CCCCCEEEE
Confidence            34555 788887766 788999999988  4577899999999988654211     1222344567777 999999999


Q ss_pred             EEEEeCCCCCCCCCcceEEEecCCCCC
Q psy6638         130 RLLAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       130 ~v~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      +|+|.|..|.|.++..+.+.|...+|+
T Consensus        88 ~V~A~n~~G~Gp~S~~v~~~T~~~v~p  114 (117)
T 1wj3_A           88 EVKATTDGGDGTSSEQIRIPRITSSGP  114 (117)
T ss_dssp             EEEEEESSCCCCBCCCEEECCCCCCCS
T ss_pred             EEEEECCCccCCCCCCEEEEcCCCCCC
Confidence            999999999999999999999877654

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=1.8e-12  Score=85.51  Aligned_cols=88  Identities=23%  Similarity=0.390  Sum_probs=71.4

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      ...|.+|.++.+......++.|+|.++... +.+.+|.|+|+.... .|.   .........+.+.+.+|.+++.|.|+|
T Consensus        15 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~-g~i~~Y~v~~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V   90 (118)
T 2yrz_A           15 AGVPDTPTRLVFSALGPTSLRVSWQEPRCE-RPLQGYSVEYQLLNGGELH---RLNIPNPAQTSVVVEDLLPNHSYVFRV   90 (118)
T ss_dssp             CSCCCCCCCCEECCCBTTEEEEECCCCCCS-SCEEEEEEEEEBSSSCCEE---EEEESCTTCCEEEEESCCTTCEEEEEE
T ss_pred             CCCCCCCCceEEEeCCCCEEEEEeCCCCCC-CCccEEEEEEEECCCCceE---EEEcCCCCcCEEEeCCCCCCCEEEEEE
Confidence            567889999998888999999999998654 589999999998544 332   111223457889999999999999999


Q ss_pred             EEeCCCCCCCCCc
Q psy6638         132 LAENPLGMSETGA  144 (273)
Q Consensus       132 ~a~~~~g~~~~s~  144 (273)
                      +|.|..|.|.++.
T Consensus        91 ~A~n~~G~g~~S~  103 (118)
T 2yrz_A           91 RAQSQEGWGRERE  103 (118)
T ss_dssp             EEEESSCEEEEEE
T ss_pred             EEEcCCcCCCCcC
Confidence            9999999888776

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} PDB: 3va2_C

Probab=99.40  E-value=9.1e-10  Score=84.85  Aligned_cols=212  Identities=14%  Similarity=0.114  Sum_probs=124.2

Q ss_pred             CCCEEEEEEEEcCCCCcee-EE--EEEEec----CCCCCcceEEEEee-----------ccEEEEEEeCCCCCCccceEE
Q psy6638          28 QDSGTLSCLATNYHGTAEM-TI--QLLVQE----TPEAPKNIRITEES-----------SRSLQISWTAPYSGNTAITQY   89 (273)
Q Consensus        28 ~~~~~y~~~a~n~~g~~~~-~~--~~~~~~----~P~~p~~~~~~~~~-----------~~~~~l~W~~~~~~~~~~~~y   89 (273)
                      ...+.+++++....|.+.. +.  ......    +|..|+++......           ...+.|+|.+..+.. ..+.|
T Consensus        73 ~~~~~~rVrt~~~~~~s~~~S~w~~~~~~~~~G~p~~~p~nlsC~~~~~~~~~~~~~~~~~~l~CtW~pG~~~~-~~t~Y  151 (317)
T 3qt2_A           73 HMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGTDAP-EDTQY  151 (317)
T ss_dssp             TTCEEEEEEEEEECSSCEEECCCEEEEECCCSCBGGGSCEEEEEEEEEEECSCSSSCCEEEEEEEEEECCTTCC-TTCEE
T ss_pred             CCCeEEEEEEEECCCCCccccccccccccCCCCCCCCcceeeEEEEccccccccccccccceEEEEeeCCCCCC-CCeeE
Confidence            4567888888776554321 11  111222    23467788766555           478999999865432 34579


Q ss_pred             EEEEEeCCCCCCCccceEEecC-CccEEEecCCC----CCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEe
Q psy6638          90 IIQYKSSEEMWPTQPLKIIVPG-SQTSATLQPLL----PATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTS  164 (273)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~  164 (273)
                      .+.++..+. +........... ....+.+....    ....|.|.|.+.+..+... +....+.....+.+.||.++++
T Consensus       152 ~L~y~~~~~-~~eC~~y~~~~~~~~~~C~f~~~~~~~~~~~~~~i~V~gss~~~~i~-s~~~~~~l~~iVkp~PP~nL~v  229 (317)
T 3qt2_A          152 FLYYRYGSW-TEECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHSAIR-PFDQLFALHAIDQINPPLNVTA  229 (317)
T ss_dssp             EEEEEETTE-EEECCCEEECTTSCEEEEEESSCSCCTTCCSEEEEEEEEECTTSCBC-CEEEEEEHHHHBCCCCCEEEEE
T ss_pred             EEEEEeCCC-CeeCCccccCCCcceeEEEeCCccccccCcEEEEEEEEcCCCCcccc-ccceEEEHHHcCcCCCCceeEE
Confidence            999887542 221111111111 23466665542    2457788888765443222 2223444444455568888888


Q ss_pred             cCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEec
Q psy6638         165 DPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYN  244 (273)
Q Consensus       165 ~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  244 (273)
                      ..   ....+.|+|++|...- ....+.|+|+|+..+....      +.. .. .  ...+.+ +|.|++.|.|+|+|..
T Consensus       230 ~~---~~~~l~v~W~~P~~~~-~~~~L~Yevryr~~~~~~~------~~~-~~-~--~~~~~l-~l~p~~~Y~vqVR~k~  294 (317)
T 3qt2_A          230 EI---EGTRMSIQWEKPVSAF-PIHCFDYEVKIHNTRNGYL------QIE-KL-M--TNAFIS-IIDDLSKYDVQVRAAV  294 (317)
T ss_dssp             EE---ETTEEEEEEECCSSSS-CGGGEEEEEEEEETTTCCE------EEE-EE-S--SSEEEE-ECCTTCCEEEEEEEEE
T ss_pred             EE---eCCcEEEEECCCCccc-ccCceEEEEEEEeCCCCcc------eEE-EE-e--eeEEEe-ecCCCCEEEEEEEEee
Confidence            76   3479999999986421 2234799999998654321      111 11 1  245555 4999999999999995


Q ss_pred             C-----CC-cCCCCccEEE
Q psy6638         245 S-----VG-KGPFSEPFIA  257 (273)
Q Consensus       245 ~-----~g-~~~~s~~~~~  257 (273)
                      .     .| .|+||+++.+
T Consensus       295 ~~~~~~~g~WSeWS~~~~~  313 (317)
T 3qt2_A          295 SSMCREAGLWSEWSQPIYV  313 (317)
T ss_dssp             CTTTSSCCCCCCCCCCEEE
T ss_pred             cCCCCCCCCcCCCCCCEEE
Confidence            3     23 3666766655

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=99.40  E-value=6.8e-13  Score=86.76  Aligned_cols=87  Identities=24%  Similarity=0.426  Sum_probs=61.7

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC--CCCCCCccceEE--------ecCCccEEEecCCCC
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS--EEMWPTQPLKII--------VPGSQTSATLQPLLP  123 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~~l~~  123 (273)
                      .+|++|.   +...+.+++.|+|.+|.+.+.++.+|.|+++..  ...|........        .....+.+.+.+|.|
T Consensus         4 ~pP~~P~---v~~~~~~sv~L~W~~P~~~G~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p   80 (115)
T 2ic2_A            4 YPPTPPN---VTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKP   80 (115)
T ss_dssp             CCCCCCE---EEECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCS
T ss_pred             CCCCcCE---eEEEeCCEEEEEEcCCCCCCCCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeCCCCC
Confidence            4567775   667788999999999876668899999999986  246653222111        112345789999999


Q ss_pred             CCeEEEEEEEeCCCCCCCCC
Q psy6638         124 ATQYQVRLLAENPLGMSETG  143 (273)
Q Consensus       124 ~~~y~~~v~a~~~~g~~~~s  143 (273)
                      ++.|.|||.|.|..|.+.++
T Consensus        81 ~t~Y~FRV~A~N~~G~~~pS  100 (115)
T 2ic2_A           81 QHTYRFRILAVYSNNDNKES  100 (115)
T ss_dssp             SEEEEEEEEEEETTSCEEEC
T ss_pred             CCEEEEEEEEEeCCCCCCCC
Confidence            99999999999999975444

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=4.9e-12  Score=81.23  Aligned_cols=92  Identities=22%  Similarity=0.320  Sum_probs=67.8

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      ++.+|.++++..  .+.+++.|+|.+|..      +.+|.|+|+..+...+.    ........ .  ..++|.+|+|++
T Consensus         8 ~~~~P~~l~~~~--~~~~sv~lsW~~p~~------~~~Y~v~y~~~~~~~~~----~~~~~~~~-~--~~~~l~~L~p~t   72 (104)
T 2dkm_A            8 PLPPPRALTLAA--VTPRTVHLTWQPSAG------ATHYLVRCSPASPKGEE----EEREVQVG-R--PEVLLDGLEPGR   72 (104)
T ss_dssp             SCCCCCCCEEEE--ECSSEEEEECCCCSS------CSEEEEEEEESSSCCSS----CCEEEEES-S--SEEEEESCCTTC
T ss_pred             CCCCCceeEEEe--cCCCEEEEEEeCCCC------CCeEEEEEEECCCCCCc----ceEEEecC-C--CEEEECCCCCCC
Confidence            445888999888  899999999998853      37999999986542211    01122222 2  289999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      .|.|+|+|+|..|.|.+. .+.++|.+.
T Consensus        73 ~Y~~~V~A~~~~~~s~p~-~~~~~T~p~   99 (104)
T 2dkm_A           73 DYEVSVQSLRGPEGSEAR-GIRARTPTS   99 (104)
T ss_dssp             CEEEEEEEECSSSBCCCE-EEECCCCCC
T ss_pred             EEEEEEEEECCCCCCCCE-EEEEEcCCC
Confidence            999999999998888765 466777643

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.39  E-value=5.9e-12  Score=81.61  Aligned_cols=90  Identities=21%  Similarity=0.307  Sum_probs=65.7

Q ss_pred             CCCCCCeeEEecCCcc--CCceEEEEEeCCCC-CCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCC
Q psy6638         154 APNGAPREVTSDPGVV--DPTELLIKWKAPPR-ESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL  230 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~--~~~~i~l~W~~~~~-~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  230 (273)
                      +.+.||.++.+..  .  ....+.|+|++|.. ...++.++.|+|+|+..+...+       .....  ...+.+.|.+|
T Consensus         6 vkp~pP~~l~v~~--~~~~~~~l~lsW~~P~~w~~~~~~~l~Y~v~y~~~~~~~w-------~~~~~--~~~~~~~l~~L   74 (109)
T 1uc6_A            6 VKPDPPENVVARP--VPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQW-------QHVEL--SNGTAHTITDA   74 (109)
T ss_dssp             CCCCCCEEEEEEE--CTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCC-------CCEEE--SSCSEEEETTC
T ss_pred             EecCCCcceEEEE--cCCCCCEEEEEECCCCCccCCCcEEEEEEEEEEECCCCCc-------EEEec--ccCCEEEEeCC
Confidence            4556899988875  3  35899999999974 2235678899999998865422       11111  12478999999


Q ss_pred             CccceEEEEEEEecCCCcCCCCccE
Q psy6638         231 TPYTKYAIVVRGYNSVGKGPFSEPF  255 (273)
Q Consensus       231 ~p~~~Y~~~v~a~n~~g~~~~s~~~  255 (273)
                      +|++.|.|+|+|.+. |.|.+|++.
T Consensus        75 ~p~t~Y~~~VRa~~~-g~g~wS~WS   98 (109)
T 1uc6_A           75 YAGKEYIIQVAAKDN-EIGTWSDWS   98 (109)
T ss_dssp             CSSSCEEEEEECCBS-SSCCCCCCC
T ss_pred             CCCCEEEEEEEEEeC-CCCCcCcCC
Confidence            999999999999985 766655543

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A

Probab=99.39  E-value=5.7e-12  Score=80.91  Aligned_cols=95  Identities=18%  Similarity=0.267  Sum_probs=72.3

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      .|.+|.++.+...+.+++.|+|.++.   +.+.+|.|.|........  ......+...+.+.|.+|.|++.|.|+|.|.
T Consensus         2 ~p~~P~~l~v~~~t~~sv~lsW~~p~---~~i~~Y~v~y~~~~~~~~--~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~   76 (104)
T 2rb8_A            2 RLDAPSQIEVKDVTDTTALITWMPPS---QPVDGFELTYGIKDVPGD--RTTIDLTEDENQYSIGNLKPDTEYEVSLISR   76 (104)
T ss_dssp             CCCCCEEEEEESCCSSCEEEEEECCS---SCCSEEEEEEEETTCTTC--CEEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCccEEEEecCCeEEEEEcCCC---CccceEEEEEEECcCCCc--eEEEEcCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            58899999999999999999999874   568899999987542111  1233456677899999999999999999999


Q ss_pred             CCCCCCCCCcceEEEecCCCC
Q psy6638         135 NPLGMSETGAELQASTLEEAP  155 (273)
Q Consensus       135 ~~~g~~~~s~~~~~~~~~~~p  155 (273)
                      +..|.+.+.. ..+.|....|
T Consensus        77 ~~~g~s~p~~-~~~~T~~~~~   96 (104)
T 2rb8_A           77 RGDMSSNPAK-ETFTTGLAAA   96 (104)
T ss_dssp             ETTEECCCEE-EEEECCC---
T ss_pred             eCCccCCCEE-EEEECCCCcc
Confidence            9988876544 5566655444

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}

Probab=99.39  E-value=4.9e-12  Score=80.19  Aligned_cols=87  Identities=21%  Similarity=0.289  Sum_probs=65.7

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++.+..  .+.+++.|+|.+|.+     .+.+|.|+|+..+....      ..... .....++++|.+|+|++.|.
T Consensus         4 ~P~~l~v~~--~t~~Sv~lsW~~p~~-----~i~~Y~v~y~~~~~~~~------~~~~~-~~~~~t~~~l~gL~P~t~Y~   69 (98)
T 3tes_A            4 APKNLVVSE--VTEDSLRLSWTAPDA-----AFDSFMIQYQESEKVGE------AINLT-VPGSERSYDLTGLKPGTEYT   69 (98)
T ss_dssp             CCEEEEEES--CCSSCEEEEEECCTT-----SCSEEEEEEEETTBCSC------CEEEE-EETTCSEEEECSCCTTCEEE
T ss_pred             CCCceEEEe--cCCCeEEEEecCCcC-----ccceEEEEEEECCCCCc------eEEEE-cCCCcCEEEECCCCCCCEEE
Confidence            577899988  899999999999853     57899999998753110      11122 22346799999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEc
Q psy6638         238 IVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      |+|+|.|..|.|++.. ..+.|
T Consensus        70 ~~V~A~~~~g~S~p~~-~~~~~   90 (98)
T 3tes_A           70 VSIYGVKGGHRSNPLS-AEFTT   90 (98)
T ss_dssp             EEEEEEETTEEBCCEE-EEEEC
T ss_pred             EEEEEEeCCcccCCEE-EEEEc
Confidence            9999999988887652 44443

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}

Probab=99.38  E-value=5.8e-12  Score=80.28  Aligned_cols=85  Identities=24%  Similarity=0.366  Sum_probs=68.0

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      +|.+|.++++...+.+++.|+|.+|..   .+.+|.|+|+..+....  ..........+.+.+.+|.|++.|.|+|+|.
T Consensus         1 ~p~~P~~l~~~~~~~~sv~lsW~pP~~---~i~~Y~v~y~~~~~~~~--~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~A~   75 (100)
T 3b83_A            1 MLQPPFNIKVTNITLTTAVVTWQPPIL---PIEGILVTFGRKNDPSD--ETTVDLTSSITSLTLTNLEPNTTYEIRIVAR   75 (100)
T ss_dssp             CCCCCEEEEEESCCSSCEEEEEECCSS---CCSEEEEEEEESSCTTT--CEEEEECTTEEEEEECSCCTTCEEEEEEEEE
T ss_pred             CCccCCccEEEEecCCEEEEEEcCCcc---cCCEEEEEEEECCCCCC--ceEEEECCcceEEEECCCCCCCEEEEEEEEE
Confidence            478999999999999999999998843   68899999987542111  1123455677899999999999999999999


Q ss_pred             CCCCCCCCCc
Q psy6638         135 NPLGMSETGA  144 (273)
Q Consensus       135 ~~~g~~~~s~  144 (273)
                      |..|.|.++.
T Consensus        76 n~~g~s~p~~   85 (100)
T 3b83_A           76 NGQQYSPPVS   85 (100)
T ss_dssp             ETTEECCCEE
T ss_pred             eCCCCCCCEE
Confidence            9998876654

>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor); helical bundle, fibronectin type III domain, beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A {Homo sapiens} PDB: 3og4_B*

Probab=99.37  E-value=8.3e-11  Score=85.26  Aligned_cols=190  Identities=13%  Similarity=0.110  Sum_probs=122.5

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEe--CCCCCCCccceEEecCCccEEEecCC---CCCCeEEEEEE
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS--SEEMWPTQPLKIIVPGSQTSATLQPL---LPATQYQVRLL  132 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~y~~~v~  132 (273)
                      +|+++++.+. +....|.|+++.... .-..|.|+|+.  ....|.....+.  ....+.+.+..+   .....|.+||+
T Consensus         8 ~P~NV~~~S~-Nf~~iL~W~p~~~~~-~~v~YtVqy~~~y~~~~W~~v~~C~--~it~t~CDlT~~~~~d~~~~Y~~RVr   83 (226)
T 3og6_B            8 PPQNVTLLSQ-NFSVYLTWLPGLGNP-QDVTYFVAYQSSPTRRRWREVEECA--GTKELLCSMMCLKKQDLYNKFKGRVR   83 (226)
T ss_dssp             CCEEEEEEEE-TTEEEEEEECCSSCC-SSCEEEEEEECCTTSCCEEECGGGT--TBCSSEEECSSCTTCCTTSCBCEEEE
T ss_pred             CCceeEEEEE-CCceEEEECCCCCCC-CCeEEEEEEEecCCCCCceeCcccc--CCCCCEEeCCcccccCCccCEEEEEE
Confidence            6788877764 667899999875333 34579999993  335676433332  234577888763   56778999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeee
Q psy6638         133 AENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTL  212 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~  212 (273)
                      |......+.|.....|.......-+||. +.+..   ...++.|.-..|......+.-..|.|.|++.++.....     
T Consensus        84 A~~g~~~S~W~~s~~F~p~~~t~igPP~-v~v~~---~~~sl~V~it~P~~~~~~~~~l~Y~v~yWk~~s~~k~~-----  154 (226)
T 3og6_B           84 TVSPSSKSPWVESEYLDYLFEVEPAPPV-LVLTQ---TEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTL-----  154 (226)
T ss_dssp             EEETTEECCCEECCCBCHHHHCCCCCCE-EEEEE---ETTEEEEEEECCCCTTCCCCCEEEEEEEEETTCSCCEE-----
T ss_pred             EEcCCCccCCeecccccchhhCEeCCCE-EEEEE---cCCEEEEEEECCCcccccCCCcEEEEEEEECCCCCeEE-----
Confidence            9987666666655445433333334554 77655   45688888887755322345679999999988753211     


Q ss_pred             eeEEecCCcccEEEcCCCCccceEEEEEEEe-cCC--CcCCCCccEEEEcCCC
Q psy6638         213 KSVELDNQYEGELRIPGLTPYTKYAIVVRGY-NSV--GKGPFSEPFIARTNEG  262 (273)
Q Consensus       213 ~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~-n~~--g~~~~s~~~~~~t~~~  262 (273)
                       ...........+.|.. .+++.|-|+|+++ ...  -.|.+|++..+.|...
T Consensus       155 -~~~~~~~~~~~~~L~~-~~~~~YCv~vqa~~~~~~~k~s~fS~~~C~~~~~~  205 (226)
T 3og6_B          155 -FPVTPHGQPVQITLQP-AASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVP  205 (226)
T ss_dssp             -CCCEETTSEEEEECCT-TCCSEEEEEEEEEEESSSEEECCCCCCEEEECCCC
T ss_pred             -eeeccCCceeEEEecC-CCCCcEEEEEEEEEecCCCCcCCCCCCEeEeCCCC
Confidence             0000011122567776 8999999999985 332  2388999988887653

>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens}

Probab=99.36  E-value=1.2e-11  Score=78.94  Aligned_cols=93  Identities=20%  Similarity=0.109  Sum_probs=69.2

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|.++++..  .+.+++.|.|+++..  .++.+..|+|.|.....         ....   ....+.++|.+|+|++.|
T Consensus         9 s~v~~l~v~~--~t~~Sv~LsW~~p~~--~~~~i~~Y~v~~~~~~~---------~~~~---~~~~t~~~i~gL~PgT~Y   72 (104)
T 2dle_A            9 IQVFDVTAVN--ISATSLTLIWKVSDN--ESSSNYTYKIHVAGETD---------SSNL---NVSEPRAVIPGLRSSTFY   72 (104)
T ss_dssp             CBEEEEEEEE--ECSSCEEEEEEESCS--TTCCSCEEEEEEECSSC---------EEEE---EESSSEEECCSCCSSCEE
T ss_pred             CCCceEEEEE--eecCEEEEEEcCCCC--CCCceEEEEEEEECCCC---------eEEE---cCCCCEEEECCCCCCCEE
Confidence            4778999988  899999999998765  24566789999985422         1111   123579999999999999


Q ss_pred             EEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         237 AIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      .|+|+|......+ ....+.+.|.++++..
T Consensus        73 ~~~V~A~~~~~~~-~p~~~~~~T~p~p~~~  101 (104)
T 2dle_A           73 NITVCPVLGDIEG-TPGFLQVHTPPVPSGP  101 (104)
T ss_dssp             EEEEEEESSSCCC-BCEEEEEECCCCSCCC
T ss_pred             EEEEEEEECCccc-CCeeEEEEccCCCCCC
Confidence            9999999654444 3446778888776654

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.36  E-value=5.3e-12  Score=90.85  Aligned_cols=89  Identities=24%  Similarity=0.334  Sum_probs=70.2

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|.++.+..  .+.+++.|+|++|.     +.+.+|.|.|+..+....      ..... .+...++++|.+|+|++.|
T Consensus       105 ~~P~~l~v~~--~t~~si~l~W~~p~-----~~i~~Y~v~y~~~~~~~~------~~~~~-v~~~~t~~~l~gL~p~t~Y  170 (195)
T 2qbw_A          105 SVPTNLEVVA--ATPTSLLISWDASY-----YGVSYYRITYGETGGNSP------VQEFT-VPYSSSTATISGLKPGVDY  170 (195)
T ss_dssp             CSSCCCEEEE--EETTEEEEECCCCC-----SSCSEEEEEEEETTCCSC------CEEEE-EETTCSEEEECSCCTTCEE
T ss_pred             CCCcccEEEe--CCCCEEEEEEeCCC-----CCccEEEEEEEECCCCCc------ceEEE-eCCCCCEEEeCCCCCCCEE
Confidence            4667888877  89999999999985     458899999988754321      11111 2233579999999999999


Q ss_pred             EEEEEEecCCCcCCCCccEEEEc
Q psy6638         237 AIVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      .|+|+|.+..|.|++|..+.+++
T Consensus       171 ~~~V~A~~~~G~g~~S~~v~~~~  193 (195)
T 2qbw_A          171 TITVYAYSDYYGSHHYSPISINY  193 (195)
T ss_dssp             EEEEEEESSTTSSCBCCCEEEEE
T ss_pred             EEEEEEEeCCccCCCCCCEEEEe
Confidence            99999999999999999888765

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A

Probab=99.35  E-value=1.7e-11  Score=78.17  Aligned_cols=82  Identities=26%  Similarity=0.439  Sum_probs=66.8

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      .|.+|.++++...+.+++.|+|.+|. .++.+.+|.|.|...+....  ......+...+.+.|.+|.|++.|.|+|+|.
T Consensus         4 ~~~~P~~l~v~~~t~~Sv~l~W~~p~-~~~~i~~Y~v~y~~~~~~~~--~~~~~v~~~~t~~~l~~L~p~t~Y~~~V~A~   80 (101)
T 3k2m_C            4 VSSVPTKLEVVAATPTSLLISWDAPM-SSSSVYYYRITYGETGGNSP--VQEFTVPYSSSTATISGLSPGVDYTITVYAW   80 (101)
T ss_dssp             EEBSSCEEEEEEEETTEEEEEECCCC-TTSCCCEEEEEEEETTCSSC--CEEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCcceEEeecCCCEEEEEecCCC-CCCceeeEEEEEEECCCCCc--cEEEEcCCCccEEEECCCCCCCEEEEEEEEE
Confidence            57799999999999999999999885 35688999999998653211  1223455677899999999999999999999


Q ss_pred             CCCCC
Q psy6638         135 NPLGM  139 (273)
Q Consensus       135 ~~~g~  139 (273)
                      +..|.
T Consensus        81 ~~~~~   85 (101)
T 3k2m_C           81 GEDSA   85 (101)
T ss_dssp             EECTT
T ss_pred             eCCcc
Confidence            98876

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.35  E-value=5.7e-12  Score=82.57  Aligned_cols=105  Identities=21%  Similarity=0.354  Sum_probs=78.6

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      ..|.+|.++++...+..++.|+|.+|.   +.+.+|.|.|...+...    .........+.+.|.+|.|++.|.|+|+|
T Consensus         6 t~p~~P~~l~~~~~t~~sv~lsW~~p~---~~i~~Y~v~y~~~~~~~----~~~~v~~~~t~~~l~~L~P~t~Y~~~V~A   78 (115)
T 2cuh_A            6 SGPDGPTQLRALNLTEGFAVLHWKPPQ---NPVDTYDIQVTAPGAPP----LQAETPGSAVDYPLHDLVLHTNYTATVRG   78 (115)
T ss_dssp             CCCSSCEEEECCCCSSSCEEEEEECCS---SCCSEEEEEEECSSSCC----EEEEEETTCSEEEECSCCSSSEEEEEEEE
T ss_pred             cCCCCCcceEEEeccCCeEEEEEECCC---CCccEEEEEEEcCCCCc----EEEEECCCccEEEEeCCCCCCEEEEEEEE
Confidence            468899999998889999999999874   36789999998754321    23445667789999999999999999999


Q ss_pred             eCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCc
Q psy6638         134 ENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPT  172 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~  172 (273)
                      .+..|.+.+.. ..+.+..    .+|.++.+..  .+.+
T Consensus        79 ~~~~~~s~~~~-~~~~T~~----~~P~~l~~~~--vt~~  110 (115)
T 2cuh_A           79 LRGPNLTSPAS-ITFTTGL----EAPRDLEAKE--VTPS  110 (115)
T ss_dssp             EETTEECCCEE-EEEESCC----CCTTTSSSCC--CCCC
T ss_pred             EeCCCcCCCEE-EEEEeCC----CCCCCcEEEE--ecCC
Confidence            99877665433 5566542    3556676655  4443

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=5.1e-12  Score=84.31  Aligned_cols=94  Identities=20%  Similarity=0.287  Sum_probs=72.4

Q ss_pred             EEEecCCCCCc-ceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC------------CCCCCccceEEecCCccEE
Q psy6638          50 LLVQETPEAPK-NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE------------EMWPTQPLKIIVPGSQTSA  116 (273)
Q Consensus        50 ~~~~~~P~~p~-~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~------------~~~~~~~~~~~~~~~~~~~  116 (273)
                      +.+...|.+|. ++.+...+.+++.|+|.+|...+  +..|.++|+...            ..|..     ......+.+
T Consensus        10 l~~~~~P~~P~~~~~~~~~~~~sv~L~W~~p~~~g--~~~Y~~~Y~~~~~~~~~~~~~~~~~~w~~-----~~~~~~~~~   82 (127)
T 2dmk_A           10 LDYLTAPNPPSIREELCTASHDTITVHWISDDEFS--ISSYELQYTIFTGQANFISLYNSVDSWMI-----VPNIKQNHY   82 (127)
T ss_dssp             CSCCSSCCCCEEEEEEEEEETTEEEEEEECSCCSS--EEEEEEEEEEESCCSCHHHHHHTGGGSEE-----EEEECSSEE
T ss_pred             ccccCCCcCCCCCCEEEeeeCCEEEEEECCCCCCC--ccceEEEEEEecccccccccccCCCCcEE-----eecccCCeE
Confidence            34467899999 89899999999999999986533  778999887511            23431     111346788


Q ss_pred             EecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEec
Q psy6638         117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTL  151 (273)
Q Consensus       117 ~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~  151 (273)
                      .+.+|.|++.|.|+|+|+|..|. .++..+.+.|.
T Consensus        83 ~v~gL~p~t~Y~frV~A~N~~G~-~~S~~v~~~T~  116 (127)
T 2dmk_A           83 TVHGLQSGTRYIFIVKAINQAGS-RNSEPTRLKTN  116 (127)
T ss_dssp             EEESCCSSCEEEEEEEEEESSCE-EECCCEEEECC
T ss_pred             EECCCCCCCEEEEEEEEEeCCCC-CCCcCeEeEeC
Confidence            99999999999999999999998 46777777764

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.34  E-value=6.6e-12  Score=104.77  Aligned_cols=89  Identities=18%  Similarity=0.287  Sum_probs=72.2

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      +|.||....+..  .+.++++|+|.+|..++ +++|++|.|+++..++..|       ..+...  ..+.+++.+|.+|+
T Consensus         9 ~P~pP~~P~v~~--~~~~sv~L~W~~P~~DG-gs~I~~Y~vE~~~~~~~~W-------~~v~~~--~~t~~~V~~L~~g~   76 (573)
T 3uto_A            9 EPEPPRFPIIEN--ILDEAVILSWKPPALDG-GSLVTNYTIEKREAMGGSW-------SPCAKS--RYTYTTIEGLRAGK   76 (573)
T ss_dssp             CCCCCEEEEEEE--ECSSCEEEEEECCSCCS-SSCCCEEEEEEEESSSCCC-------EEEEEE--SSSEEEECCCCTTC
T ss_pred             CCccCCCCEEEE--eeCCEEEEEECCCCcCC-CCcccEEEEEEEECCCCce-------EEeccc--cCCEEEeCCCCCCC
Confidence            556888888888  89999999999997653 6689999999999887643       222221  24689999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccE
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPF  255 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~  255 (273)
                      .|.|||+|.|..|.|++|+..
T Consensus        77 ~Y~FRV~A~N~~G~s~PS~~s   97 (573)
T 3uto_A           77 QYEFRIIAENKHGQSKPCEPT   97 (573)
T ss_dssp             EEEEEEEEEETTEECCCCCCC
T ss_pred             cEeEEEEEEcCceEcCCcCCC
Confidence            999999999999999887543

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}

Probab=99.33  E-value=4.9e-11  Score=86.58  Aligned_cols=125  Identities=17%  Similarity=0.169  Sum_probs=80.8

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEE--EecCCCCCcceEEEEe-eccEEEEEEeCCCCCCccceEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLL--VQETPEAPKNIRITEE-SSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~--~~~~P~~p~~~~~~~~-~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      .....|..+.....|.+++.|.|..|...+ ...+.  -...|.||.++.+... ....+.|+|.+|.... ....|+|+
T Consensus        68 ~~~C~~~~~~~~~~Y~~~V~a~N~~G~~~s~~~~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~P~~~~-~~l~yev~  146 (206)
T 3v6o_A           68 FYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPE-NNLQFQIR  146 (206)
T ss_dssp             CEEEEECSCCTTSCEEEEEEEC---CCEECCCEEECGGGGBCCCCCCSCEEEEETTTTEEEEEC---------CEEEEEE
T ss_pred             CceEEeCcHHhcccEEEEEEEEcCCccccCCcccEeecceEcCCCCCceEeEEecCCCeEEEEECCCCCCC-CcEEEEEE
Confidence            345566666677899999999999997654 23332  2568999999988765 5789999999875432 35799999


Q ss_pred             EEeCC--CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcc
Q psy6638          93 YKSSE--EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAE  145 (273)
Q Consensus        93 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~  145 (273)
                      |+..+  ..|...   .........+.+.+|+|++.|.|+|+|.+..|.|.||++
T Consensus       147 y~~~~~~~~w~~~---~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSeW  198 (206)
T 3v6o_A          147 YGLSGKEVQWKMY---EVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNW  198 (206)
T ss_dssp             EEESSSSCCCEEE---EECC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCCC
T ss_pred             EEECCCCCceEEE---ecccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCCC
Confidence            99865  355521   111122346889999999999999999986665555543

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.32  E-value=5.6e-12  Score=102.68  Aligned_cols=132  Identities=18%  Similarity=0.240  Sum_probs=92.9

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE--ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEe
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV--QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS   95 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~--~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~   95 (273)
                      ..+.+..+.....|.|+|.|.|..|.......+..  ..+|.+|.++.+.......+.|+|.+|...++.+..|+|+|+.
T Consensus       347 ~~ct~~l~~~~t~Y~f~V~A~N~~G~~~S~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP~~~~g~~l~YeV~Yr~  426 (488)
T 2q7n_A          347 YRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICK  426 (488)
T ss_dssp             EEEEEECCSSCCCCEEEEEEEETTEEEEEEEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEEEECSSSEEEEEEEEBC
T ss_pred             EEEEEcCCCCccEEEEEEEEEeCCCCccceEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCCCCCCCcceEEEEEEEE
Confidence            34445433335899999999999998544222211  3578999999988888899999999886555678899999998


Q ss_pred             CCCCCCCccceEEecC-CccEE--EecCCCCCCeEEEEEEEeCCCCC---CCCCcceEEEecC
Q psy6638          96 SEEMWPTQPLKIIVPG-SQTSA--TLQPLLPATQYQVRLLAENPLGM---SETGAELQASTLE  152 (273)
Q Consensus        96 ~~~~~~~~~~~~~~~~-~~~~~--~~~~l~~~~~y~~~v~a~~~~g~---~~~s~~~~~~~~~  152 (273)
                      .+..+...  ...... ....+  .+.+|.|++.|.|+|+|.+ .|.   |.||..+.+.|.+
T Consensus       427 ~~~~~w~~--~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e  486 (488)
T 2q7n_A          427 ANSKKEVR--NATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTE  486 (488)
T ss_dssp             TTSCCEEE--EEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCC
T ss_pred             CCCCCceE--EEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECCC
Confidence            65432211  111111 12344  8999999999999999999 775   5777767776643

>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens}

Probab=99.32  E-value=9.4e-10  Score=80.46  Aligned_cols=189  Identities=11%  Similarity=0.082  Sum_probs=108.1

Q ss_pred             ceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEe----CCCCCCCccceE-EecC--CccEEEe--cCCCCCCeEEEEE
Q psy6638          61 NIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS----SEEMWPTQPLKI-IVPG--SQTSATL--QPLLPATQYQVRL  131 (273)
Q Consensus        61 ~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~----~~~~~~~~~~~~-~~~~--~~~~~~~--~~l~~~~~y~~~v  131 (273)
                      ++.........+++.|......   ...+.+.|..    ....+....... ..+.  ....+.+  ..+.....|.+.|
T Consensus         3 nl~C~~~~~~~ltC~W~~~~~~---~~~~~~~~~l~~~~~~~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~~~y~v~v   79 (219)
T 3tgx_A            3 DLVCYTDYLQTVICILEMWNLH---PSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATYTCHMDVFHFMADDIFSVQI   79 (219)
T ss_dssp             CEEEEECSSSEEEEEEECSSSS---CCEEEEEECCTTSCCTTSCCEEEEEEEEECSSEEEEEEECCGGGSCTTCEEEEEE
T ss_pred             CceEEeCCCeEEEEEEECCCCc---CceEEEEEEccccCCCCcccCCCCccccCCCCCcEEEEEEECccccccceEEEEE
Confidence            4445555567899999975431   1233343321    111111111000 0111  1233444  4566777787766


Q ss_pred             EEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCC---CccceeeeEEEEEEEcCCCCccce
Q psy6638         132 LAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRE---SWNGVLLGYDVGYQISSGSSLALS  208 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~---~~~~~i~~y~v~~~~~~~~~~~~~  208 (273)
                      .+  ..|. ..+....+.....+-+.||.++++..    .+.+.|+|++|...   ........|+|+|+..+..+....
T Consensus        80 ~~--~~g~-~~s~~~~f~~~~iVkp~PP~nltv~~----~~~l~lsW~~P~~~p~~~~~~~~L~Yevryr~~~~~W~~~~  152 (219)
T 3tgx_A           80 TD--QSGQ-YSQECGSFLLAESIKPAPPFDVTVTF----SGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSP  152 (219)
T ss_dssp             EC--TTSS-CEEEEEEEEGGGCBCCCCCEEEEEEE----SSSEEEEEECGGGSGGGGGGTTSEEEEEEEEETTSCTTSCC
T ss_pred             Ee--CCCC-EEecCceEeeeeeEEeCCCCceEEEe----CCCEEEEEeCCcCCccccccccCEEEEEEEecCCCCceecc
Confidence            44  3442 22333455555556667898988854    36899999998542   111235799999999875321110


Q ss_pred             eeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCC------cCCCCccEEEEcCCC
Q psy6638         209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVG------KGPFSEPFIARTNEG  262 (273)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g------~~~~s~~~~~~t~~~  262 (273)
                      ..   ...........+.+.+|.|++.|.|+|+|....|      .|+||+++.+.|.++
T Consensus       153 ~~---~~~~~~~~~~~~~~~~L~p~t~Y~vqVRa~~~~g~~~~G~WSeWS~~~~~~T~~~  209 (219)
T 3tgx_A          153 RR---KLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSE  209 (219)
T ss_dssp             EE---EEECSSCSEEEECTTSSCSSCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCC-
T ss_pred             cc---eeEecCCCEEEEEeccCCCCCEEEEEEEEeeCCCCCCCCcCcCCCCCeEEECCch
Confidence            00   1111122245677889999999999999998753      267788899998764

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A

Probab=99.31  E-value=3.5e-11  Score=89.17  Aligned_cols=128  Identities=20%  Similarity=0.240  Sum_probs=90.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE--ecCCCCCcceEE--EEeec----cEEEEEEeCCCCC---Cc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV--QETPEAPKNIRI--TEESS----RSLQISWTAPYSG---NT   84 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~--~~~P~~p~~~~~--~~~~~----~~~~l~W~~~~~~---~~   84 (273)
                      ..+.|.+.++.....|.+++.| |  +.......+.+  ..+|.||.++.+  .....    ..+.|+|++|...   ++
T Consensus        92 ~~C~~~~~~l~~~~~Y~~~V~a-N--~~~s~~~~~~~~~~v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g  168 (236)
T 1axi_B           92 NSCYFNSSFTSIAIPYCIKLTS-N--GGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKG  168 (236)
T ss_dssp             TEEEECGGGCCSSSEEEEEEEE-T--TEEEEEEEEEGGGGBCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTT
T ss_pred             EEEEECCcCCcccceEEEEEEE-C--CccCCCeEeecccccccCCCcccEEEEEecccCCCCceEEEEECCCCCccccCC
Confidence            4566777778888899999999 8  32222222322  468999999853  33322    3599999988532   22


Q ss_pred             -cceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC--CCCCCcceEEEec
Q psy6638          85 -AITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG--MSETGAELQASTL  151 (273)
Q Consensus        85 -~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g--~~~~s~~~~~~~~  151 (273)
                       .+..|+|+|+..+. .|..     ......+.+.|.+|.+++.|.|+|+|....|  +|.||..+.+.+.
T Consensus       169 ~~~l~Yevry~~~~~~~w~~-----~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~~~~~~p  234 (236)
T 1axi_B          169 WMVLEYELQYKEVNETKWKM-----MDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLP  234 (236)
T ss_dssp             SCCEEEEEEEEETTCSSCEE-----CCCBSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCCEEECCC
T ss_pred             ceeeEEEEEEEECCCCceEE-----EeccCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCCEEEECC
Confidence             46799999998653 4441     1122457889999999999999999998888  8999988877664

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}

Probab=99.31  E-value=2.8e-11  Score=76.60  Aligned_cols=82  Identities=24%  Similarity=0.390  Sum_probs=66.8

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCC-CCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM-WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ..|.+|.++++...+.+++.|+|.++.   +.+.+|.|.|...+.. +.   .....+...+.+.|.+|.|++.|.|+|+
T Consensus         3 t~~~~P~~l~v~~~t~~Si~lsW~~p~---~~i~~Y~v~y~~~~~~~~~---~~~~v~~~~t~~~l~~L~p~t~Y~v~V~   76 (97)
T 3qht_C            3 SVSSVPTKLEVVAATPTSLLISWDASS---SSVSYYRITYGETGGNSPV---QEFTVPGSSSTATISGLSPGVDYTITVY   76 (97)
T ss_dssp             --CCSSSSCEEEEEETTEEEEECCCCC---SSCCEEEEEEEESSSCSCC---EEEEEETTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCCCCceEEEecCCCEEEEEEeCCC---CCCCEEEEEEEECCCCCcc---EEEEeCCCcCEEEeCCCCCCCEEEEEEE
Confidence            367899999999999999999999873   4788999999986543 22   2344566778999999999999999999


Q ss_pred             EeCCCCCCC
Q psy6638         133 AENPLGMSE  141 (273)
Q Consensus       133 a~~~~g~~~  141 (273)
                      |.+..|.|.
T Consensus        77 A~~~~G~gp   85 (97)
T 3qht_C           77 AYYSYYDLY   85 (97)
T ss_dssp             EEEEETTEE
T ss_pred             EEeCCccCC
Confidence            999988764

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*

Probab=99.30  E-value=2.5e-11  Score=79.09  Aligned_cols=80  Identities=24%  Similarity=0.436  Sum_probs=64.3

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      +.|++|.++.+...+.+++.|+|.++.   +.+.+|.|.|+..++...  ......+...+++.|.+|.|++.|.|+|+|
T Consensus         2 GvP~~P~~L~v~~~t~~Sv~lsW~~p~---g~i~~Y~v~y~~~~~~~~--~~~~~v~~~~ts~~l~gL~P~T~Y~v~V~A   76 (114)
T 3qwq_B            2 GVSDVPRDLEVVAATPTSLLISWDSGR---GSYQYYRITYGETGGNSP--VQEFTVPGPVHTATISGLKPGVDYTITVYA   76 (114)
T ss_dssp             ---CCCEEEEEEEEETTEEEEEEECCS---CCCSEEEEEEEESSCSSC--CEEEEEETTCCEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCCCceEEEecCCCEEEEEEcCCc---CcccEEEEEEEECCCCCc--cEEEEeCCCcCEEEeCCCCCCCEEEEEEEE
Confidence            579999999999999999999999873   478999999998654311  123345667889999999999999999999


Q ss_pred             eCCCC
Q psy6638         134 ENPLG  138 (273)
Q Consensus       134 ~~~~g  138 (273)
                      .+..|
T Consensus        77 ~~~~G   81 (114)
T 3qwq_B           77 VTDHK   81 (114)
T ss_dssp             EEEEE
T ss_pred             EECCc
Confidence            99887

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.2e-10  Score=74.69  Aligned_cols=89  Identities=17%  Similarity=0.305  Sum_probs=66.2

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      .+|.+|.++++...+.+++.|+|.++..    +.+|.|.|+.... .|.. ........  ..+.+.+|.|++.|.|+|+
T Consensus         7 ~~~~~P~~l~~~~~~~~sv~lsW~~p~~----~~~Y~v~y~~~~~~~~~~-~~~~~~~~--~~~~l~~L~p~t~Y~~~V~   79 (104)
T 2dkm_A            7 GPLPPPRALTLAAVTPRTVHLTWQPSAG----ATHYLVRCSPASPKGEEE-EREVQVGR--PEVLLDGLEPGRDYEVSVQ   79 (104)
T ss_dssp             CSCCCCCCCEEEEECSSEEEEECCCCSS----CSEEEEEEEESSSCCSSC-CEEEEESS--SEEEEESCCTTCCEEEEEE
T ss_pred             CCCCCCceeEEEecCCCEEEEEEeCCCC----CCeEEEEEEECCCCCCcc-eEEEecCC--CEEEECCCCCCCEEEEEEE
Confidence            4678999999999999999999998742    3799999987653 3321 12223332  3899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEe
Q psy6638         133 AENPLGMSETGAELQAST  150 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~  150 (273)
                      |.+..|.+.+.. +.+.+
T Consensus        80 A~~~~~~s~p~~-~~~~T   96 (104)
T 2dkm_A           80 SLRGPEGSEARG-IRART   96 (104)
T ss_dssp             EECSSSBCCCEE-EECCC
T ss_pred             EECCCCCCCCEE-EEEEc
Confidence            999887765433 33444

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.28  E-value=7.8e-11  Score=77.24  Aligned_cols=88  Identities=18%  Similarity=0.246  Sum_probs=70.0

Q ss_pred             EEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-----CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          65 TEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-----MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        65 ~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      ...+.+++.|+|..+ ..++.+.+|.|.|+..+.     .|.   ..........++.|.+|+|++.|.|+|+|.|..|.
T Consensus        25 ~a~sstsi~vsW~~~-~~~g~i~gY~V~Y~~~~~~~~~~~~~---~~~v~~~~~~~~~l~~L~p~T~Y~~~V~A~n~~G~  100 (120)
T 1ujt_A           25 VVLTPTTVQVTWTVD-RQPQFIQGYRVMYRQTSGLQATSSWQ---NLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQ  100 (120)
T ss_dssp             CCCBTTEEEEEEEES-SCCSSCCEEEEEEEESSSSSTTTCCE---EEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCC
T ss_pred             EEccCceEEEEEccC-CCCCcEeeEEEEEEECCCCCCCCccE---EEEecCCCcCEEEECCCCCCCEEEEEEEEECCCcc
Confidence            445778999999964 456788999999998653     232   11122345678999999999999999999999999


Q ss_pred             CCCCcceEEEecCCC-CC
Q psy6638         140 SETGAELQASTLEEA-PN  156 (273)
Q Consensus       140 ~~~s~~~~~~~~~~~-p~  156 (273)
                      |.+|..+.++|.+.+ |.
T Consensus       101 Gp~S~~v~~~T~e~v~Ps  118 (120)
T 1ujt_A          101 GMDSESKTVRTTEESGPS  118 (120)
T ss_dssp             CCCCCCEEEEECSSCCCC
T ss_pred             CCCCCCEEEECCCCCCCC
Confidence            999999999998887 74

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic}

Probab=99.27  E-value=1.2e-10  Score=73.93  Aligned_cols=81  Identities=33%  Similarity=0.522  Sum_probs=66.0

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      +.+|.++.+...+.+++.|+|.+|   ++.+.+|.|+|+.... .+.   .........+.+.+.+|.|++.|.|+|+|.
T Consensus         2 ~~~P~~l~v~~~~~~sv~l~W~~p---~~~i~~Y~v~y~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   75 (98)
T 3teu_A            2 LDAPTDLQVTNVTDTSITVSWTPP---SATITGYRITYTPSNGPGEP---KELTVPPSSTSVTITGLTPGVEYVVSVYAL   75 (98)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECC---SSCCSEEEEEEEETTSCSCC---EEEEECTTCSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCceEEEEecCCEEEEEEeCC---CCcccEEEEEEEECCCCCce---EEEEcCCCcCEEEecCCCCCCEEEEEEEEE
Confidence            678999999999999999999988   3578899999986543 211   233455677899999999999999999999


Q ss_pred             CCCCCCCC
Q psy6638         135 NPLGMSET  142 (273)
Q Consensus       135 ~~~g~~~~  142 (273)
                      +..|.|.+
T Consensus        76 n~~G~s~p   83 (98)
T 3teu_A           76 KDNQESPP   83 (98)
T ss_dssp             ETTEECCC
T ss_pred             eCCCCCCC
Confidence            99987654

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=4e-12  Score=81.85  Aligned_cols=91  Identities=30%  Similarity=0.469  Sum_probs=71.9

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC--CCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE--MWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..+|.+|.++++...+.+++.|+|.++.   +.+.+|.|.|+....  .|.    ....+...+.+.|.+|.|++.|.|+
T Consensus         5 ~~~p~~P~~l~v~~~t~~si~lsW~~p~---g~i~~Y~v~y~~~~~~~~~~----~~~v~~~~~~~~l~~L~p~t~Y~~~   77 (105)
T 2ekj_A            5 SSGRSPPSNLALASETPDSLQVSWTPPL---GRVLHYWLTYAPASGLGPEK----SVSVPGARSHVTLPDLQAATKYRVL   77 (105)
T ss_dssp             CTTCCCCEEEEEEEEETTEEEEEEECCS---SCCSBBCBBCCCTTSCSCCC----CBCCBTTSSEEEECSCCSSCCCBCB
T ss_pred             ccCCCCCCceEEEeCCCCEEEEEEeCCC---CcceEEEEEEEECCCCCccE----EEEeCCCcCEEEeCCCCCCCEEEEE
Confidence            3578899999999999999999999883   578899999887543  222    1234456789999999999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEec
Q psy6638         131 LLAENPLGMSETGAELQASTL  151 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~  151 (273)
                      |+|.+..|.+..+.. ...|.
T Consensus        78 V~A~~~~g~g~~s~~-~~~T~   97 (105)
T 2ekj_A           78 VSAIYAAGRSEAVSA-TGQTA   97 (105)
T ss_dssp             BCBBCSSCBCCCBCC-BCCCC
T ss_pred             EEEEeCCccCCcccc-EEEcc
Confidence            999999998876653 34443

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A

Probab=99.25  E-value=6.7e-11  Score=87.24  Aligned_cols=123  Identities=15%  Similarity=0.111  Sum_probs=84.5

Q ss_pred             eeeeCCCEEEEEEEEcCCCCceeEEEEEE--ecCCCCCcceEEEEee-ccEEEEEEeCCCCC-CccceEEEEEEEeCCC-
Q psy6638          24 NVLRQDSGTLSCLATNYHGTAEMTIQLLV--QETPEAPKNIRITEES-SRSLQISWTAPYSG-NTAITQYIIQYKSSEE-   98 (273)
Q Consensus        24 ~~~~~~~~~y~~~a~n~~g~~~~~~~~~~--~~~P~~p~~~~~~~~~-~~~~~l~W~~~~~~-~~~~~~y~v~~~~~~~-   98 (273)
                      ++.....|.+++.|.+..+  .....+..  ..+|.+|.++.+.... ...+.|+|.+|... ...+..|+|.|+.... 
T Consensus        90 ~~~~~~~y~~~V~a~~~~~--~~~~~~~~~~~v~p~pP~~l~~~~~~~~~~l~v~W~~P~~~~~~~~l~Yev~y~~~~~~  167 (227)
T 1eer_B           90 DTSSFVPLELRVTAASGAP--RYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGA  167 (227)
T ss_dssp             GCCBSSCEEEEEEETTSCE--EEEEEECGGGSEECCCCEEEEEEECSSTTCEEEEEECCSSCSCGGGEEEEEEEECCSSS
T ss_pred             cceeeEEEEEEEEecCCCc--cEEEEEEeeeeEccCcCcceEEEEcCCCCeEEEEEcCCCCcccccceEEEEEEEcCCCC
Confidence            4455567777777754322  11111111  2579999999888764 78999999988642 2236799999997653 


Q ss_pred             CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC----CC-CCCCCcceEEEec
Q psy6638          99 MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP----LG-MSETGAELQASTL  151 (273)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~----~g-~~~~s~~~~~~~~  151 (273)
                      .|..   ........+.+.|.+|.+++.|.|+|+|...    .| +|.||..+.+.+.
T Consensus       168 ~w~~---~~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~~~g~wS~WS~~~~~~t~  222 (227)
T 1eer_B          168 GSVQ---RVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTP  222 (227)
T ss_dssp             CCCC---EEEECTTCCEEEECCCCSSCEEEEEEEEEECTTTCCEECCCCCCCEEEEC-
T ss_pred             CcEE---EEEEecCceEEEEcccCCCCeEEEEEEEeECCCCCCCcCCCCCCCEEEECc
Confidence            4652   1233345678999999999999999999964    13 5888888888774

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.24  E-value=2.2e-11  Score=98.61  Aligned_cols=133  Identities=20%  Similarity=0.218  Sum_probs=97.5

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE--ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV--QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~--~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      .....|..+.+...|.+++.|.|..|.......+.+  ..+|.+|.++.+.....+.+.|+|.+|.........|+|+|+
T Consensus       341 ~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~S~~~~~~~~~VkP~PP~nl~v~~~~stsl~LsW~~P~~~~~~~L~YeVrYr  420 (483)
T 3e0g_A          341 SYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIK  420 (483)
T ss_dssp             CEEEEEECCTTCCCEEEEEEEECSSCEEEEEEEECGGGGBCCCCCEEEEECCSSSSSCCEEEECCSCCTTSBCCCEEEEE
T ss_pred             EEEEEEccCCCCcEEEEEEEEEeCCCCcccceEEEeccccCCCCCeeeEEEEecCCeEEEEECCCCCCCCceEEEEEEEE
Confidence            446778888888999999999999998775533222  367999999988877788999999988655556789999999


Q ss_pred             eCCCCCCCccceEEec---CCccEEEecCCCCCCeEEEEEEEeCCCCC---CCCCcceEEEecC
Q psy6638          95 SSEEMWPTQPLKIIVP---GSQTSATLQPLLPATQYQVRLLAENPLGM---SETGAELQASTLE  152 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~y~~~v~a~~~~g~---~~~s~~~~~~~~~  152 (273)
                      ..+..+..  ......   .....+.+.+|.|++.|.|+|+|. ..|.   |.||.+..+.|.+
T Consensus       421 ~~~~~~~~--~~vsv~~~~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~g~WSeWS~~~~f~T~E  481 (483)
T 3e0g_A          421 KSNSVQEQ--RNVTIQGVENSSYLVALDKLNPYTLYTFRIRCS-TETFWKWSKWSNKKQHLTTE  481 (483)
T ss_dssp             CSSSCCCE--EECCCBCCSSSBCCCCCCSCCSSSSCEEEEECC-CSSCCCCCCCCCCCCCCCCC
T ss_pred             ECCCCCce--EEEEEeccCCceeEEEEeccCCCcEEEEEEEEe-eCCCCCcCCCCCceeeECCC
Confidence            87543210  011111   122356789999999999999999 5564   6777777776644

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens}

Probab=99.22  E-value=1.5e-10  Score=81.08  Aligned_cols=87  Identities=18%  Similarity=0.305  Sum_probs=71.3

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      .|.||.++++..++.+++.|+|++|....+ +.+|.|++...        .....+...+++++.+|.+++.|.|+|.|.
T Consensus       150 ~p~Pp~NL~At~VT~tSVtLsW~aP~~~~G-I~gY~ly~~g~--------~v~~v~~~~tsyt~~gLk~~TeYsF~V~A~  220 (238)
T 2w1n_A          150 VVNPVRDFKASEINKKNVTVTWTEPETTEG-LEGYILYKDGK--------KVAEIGKDETSYTFKKLNRHTIYNFKIAAK  220 (238)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCSCCTT-EEEEEEEETTE--------EEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             ccCCCCceEEEEccCCeEEEEecCCCCCCC-ceeEEEEeCCc--------eeEEeeccceEEEecCCCCCCEEEEEEEEE
Confidence            578999999999999999999999977655 89999987531        123455667899999999999999999999


Q ss_pred             CCCCCCCCCcceEEEe
Q psy6638         135 NPLGMSETGAELQAST  150 (273)
Q Consensus       135 ~~~g~~~~s~~~~~~~  150 (273)
                      +..|.......+.++|
T Consensus       221 d~~G~~Ss~e~vtVrT  236 (238)
T 2w1n_A          221 YSNGEVSSKESLTLRT  236 (238)
T ss_dssp             ETTSCBCCCEEEEEEC
T ss_pred             eCCCCccccCcEEEEe
Confidence            9999766556566655

>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens}

Probab=99.22  E-value=3.1e-10  Score=72.31  Aligned_cols=90  Identities=16%  Similarity=0.107  Sum_probs=68.3

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      ..|.+|.++++...+..++.|.|.++......+..|+|.+.....       ........+.+.|.+|+|++.|.|.|+|
T Consensus         6 ~~Ps~v~~l~v~~~t~~Sv~LsW~~p~~~~~~i~~Y~v~~~~~~~-------~~~~~~~~t~~~i~gL~PgT~Y~~~V~A   78 (104)
T 2dle_A            6 SGAIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETD-------SSNLNVSEPRAVIPGLRSSTFYNITVCP   78 (104)
T ss_dssp             SSCCBEEEEEEEEECSSCEEEEEEESCSTTCCSCEEEEEEECSSC-------EEEEEESSSEEECCSCCSSCEEEEEEEE
T ss_pred             CCCCCCceEEEEEeecCEEEEEEcCCCCCCCceEEEEEEEECCCC-------eEEEcCCCCEEEECCCCCCCEEEEEEEE
Confidence            468889999999999999999999876666666789999986422       1233446788999999999999999999


Q ss_pred             eCCCCCCCCCcceEEEec
Q psy6638         134 ENPLGMSETGAELQASTL  151 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~  151 (273)
                      ......+. ...+.+.|.
T Consensus        79 ~~~~~~~~-p~~~~~~T~   95 (104)
T 2dle_A           79 VLGDIEGT-PGFLQVHTP   95 (104)
T ss_dssp             ESSSCCCB-CEEEEEECC
T ss_pred             EECCcccC-CeeEEEEcc
Confidence            96544433 333555554

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1

Probab=99.21  E-value=4.2e-10  Score=69.76  Aligned_cols=85  Identities=26%  Similarity=0.393  Sum_probs=65.9

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      .+|.+|.++.+......++.|+|.++.. ++.+.+|.|+.  . +.      . ......+.+.+.+|.+++.|.|+|+|
T Consensus         2 ~~P~~P~~l~~~~~~~~sv~L~W~~~~~-~~~i~~Y~v~~--~-~~------~-~~~~~~~~~~~~~L~~~t~Y~~~V~A   70 (88)
T 1k85_A            2 MAPTAPTNLASTAQTTSSITLSWTASTD-NVGVTGYDVYN--G-TA------L-ATTVTGTTATISGLAADTSYTFTVKA   70 (88)
T ss_dssp             CSCCCCEEEEEEEECSSCEEEEEECCSC-CSSEEEEEEEE--S-SS------E-EEEESSSEEEECCCCSSCEEEEEEEE
T ss_pred             cCcCCCCccEEEeccCCEEEEEECCCCC-CCCccEEEEEE--C-CE------E-EeecCCCEEEeCCCCCCCEEEEEEEE
Confidence            4789999999998899999999998854 33588999984  1 11      1 12224578999999999999999999


Q ss_pred             eCCCCC-CCCCcceEEE
Q psy6638         134 ENPLGM-SETGAELQAS  149 (273)
Q Consensus       134 ~~~~g~-~~~s~~~~~~  149 (273)
                      .+..|. +..+..+.++
T Consensus        71 ~n~~G~~s~~S~~v~v~   87 (88)
T 1k85_A           71 KDAAGNVSAASNAVSVK   87 (88)
T ss_dssp             EETTTEECCCCCCEEEE
T ss_pred             EeCCCCcCCCCCCEEEE
Confidence            999886 6666666554

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}

Probab=99.21  E-value=7.7e-11  Score=77.63  Aligned_cols=87  Identities=26%  Similarity=0.480  Sum_probs=66.6

Q ss_pred             EEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          51 LVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        51 ~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ....+|.+|.++++...+.+++.|+|.+|..   .+.+|.|.|...+....  .....++...+.+.|.+|.|++.|.|+
T Consensus        24 ~~~tp~~~P~~l~v~~~t~~Si~lsW~~p~~---~i~~Y~V~y~~~~~~~~--~~~~~v~~~~t~~~l~gL~P~t~Y~~~   98 (121)
T 2ocf_D           24 FQGSVSDVPTKLEVVAATPTSLLISWDAPAV---TVRYYRITYGETGGNSP--VQEFTVPGSKSTATISGLKPGVDYTIT   98 (121)
T ss_dssp             -----CCSCEEEEEEEECSSCEEEEEECCSS---CCCEEEEEEEETTTCSC--BEEEEEETTCCEEEECCCCTTCEEEEE
T ss_pred             eccCCCCCCCccEEEecCCCEEEEEEcCCCC---CCcEEEEEEEECCCCCc--cEEEEeCCCcCEEEeCCCCCCCEEEEE
Confidence            3356788999999999999999999998742   58899999988654211  123345567789999999999999999


Q ss_pred             EEEeCCCCCCCC
Q psy6638         131 LLAENPLGMSET  142 (273)
Q Consensus       131 v~a~~~~g~~~~  142 (273)
                      |.|.+..|.|..
T Consensus        99 V~A~~~~G~g~~  110 (121)
T 2ocf_D           99 VYAVTGLRLMLA  110 (121)
T ss_dssp             EEEECCHHHHHH
T ss_pred             EEEEeCCCccCC
Confidence            999999886654

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.21  E-value=1.1e-10  Score=97.53  Aligned_cols=89  Identities=26%  Similarity=0.444  Sum_probs=74.6

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCC-CCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPY-SGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..+|+||..+.+...+.++++|+|.+|. ++++++.+|.|+++..+ ..|....     ....+.+++.+|.++..|.||
T Consensus         7 ~~~P~pP~~P~v~~~~~~sv~L~W~~P~~DGgs~I~~Y~vE~~~~~~~~W~~v~-----~~~~t~~~V~~L~~g~~Y~FR   81 (573)
T 3uto_A            7 VPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCA-----KSRYTYTTIEGLRAGKQYEFR   81 (573)
T ss_dssp             -CCCCCCEEEEEEEECSSCEEEEEECCSCCSSSCCCEEEEEEEESSSCCCEEEE-----EESSSEEEECCCCTTCEEEEE
T ss_pred             CCCCccCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEec-----cccCCEEEeCCCCCCCcEeEE
Confidence            4578999999999999999999999985 57789999999999865 4686322     125678999999999999999


Q ss_pred             EEEeCCCCCCCCCcce
Q psy6638         131 LLAENPLGMSETGAEL  146 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~  146 (273)
                      |+|.|..|.|.++...
T Consensus        82 V~A~N~~G~s~PS~~s   97 (573)
T 3uto_A           82 IIAENKHGQSKPCEPT   97 (573)
T ss_dssp             EEEEETTEECCCCCCC
T ss_pred             EEEEcCceEcCCcCCC
Confidence            9999999998877654

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.21  E-value=2.5e-10  Score=73.84  Aligned_cols=85  Identities=20%  Similarity=0.375  Sum_probs=66.1

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCC------CccceEEecCCccEEEecCCCCCCeE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP------TQPLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      ..|.+|.++++...+.+++.|+|.++.   +.+.+|+|.|....+...      .......++...+++.|.+|.|++.|
T Consensus         7 ~~pp~p~~L~v~~~T~~Si~LsW~~p~---g~v~~Y~i~y~~~~~~~~e~~~~~~~~~~~~v~~~~t~~~l~gL~PgT~Y   83 (112)
T 2cui_A            7 GSRPRLSQLSVTDVTTSSLRLNWEAPP---GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLY   83 (112)
T ss_dssp             CCCCCCCCCEEESCCSSCEEEECCCCT---TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCEE
T ss_pred             CCCCCCCceEEEeecCCeEEEEECCCC---CCccEEEEEEEeCCCCccccccccCcceEEEcCCCcCEEEeCCCCCCCEE
Confidence            356788999999999999999999863   468899999997643210      01123456677889999999999999


Q ss_pred             EEEEEEeCCCCCCC
Q psy6638         128 QVRLLAENPLGMSE  141 (273)
Q Consensus       128 ~~~v~a~~~~g~~~  141 (273)
                      .|+|.|.+..+.+.
T Consensus        84 ~~~V~A~~~~~~s~   97 (112)
T 2cui_A           84 SLTLYGLRGPHKAD   97 (112)
T ss_dssp             EEEEEEECSSSEEE
T ss_pred             EEEEEEEECCcccC
Confidence            99999998766543

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}

Probab=99.20  E-value=1.6e-10  Score=73.10  Aligned_cols=80  Identities=38%  Similarity=0.616  Sum_probs=63.9

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCC
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL  137 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~  137 (273)
                      +|.++++...+.+++.|+|.++.   +.+.+|.|.|+......  .......+...+++.+.+|.|++.|.|+|+|.+..
T Consensus         4 ~P~~l~v~~~t~~Sv~lsW~~p~---~~i~~Y~v~y~~~~~~~--~~~~~~~~~~~t~~~l~gL~P~t~Y~~~V~A~~~~   78 (98)
T 3tes_A            4 APKNLVVSEVTEDSLRLSWTAPD---AAFDSFMIQYQESEKVG--EAINLTVPGSERSYDLTGLKPGTEYTVSIYGVKGG   78 (98)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCT---TSCSEEEEEEEETTBCS--CCEEEEEETTCSEEEECSCCTTCEEEEEEEEEETT
T ss_pred             CCCceEEEecCCCeEEEEecCCc---CccceEEEEEEECCCCC--ceEEEEcCCCcCEEEECCCCCCCEEEEEEEEEeCC
Confidence            67788898899999999999874   36889999999865210  11234556678899999999999999999999988


Q ss_pred             CCCCC
Q psy6638         138 GMSET  142 (273)
Q Consensus       138 g~~~~  142 (273)
                      |.+.+
T Consensus        79 g~S~p   83 (98)
T 3tes_A           79 HRSNP   83 (98)
T ss_dssp             EEBCC
T ss_pred             cccCC
Confidence            76654

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.20  E-value=1.7e-10  Score=72.58  Aligned_cols=83  Identities=27%  Similarity=0.420  Sum_probs=63.8

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ++|.++++...+.+++.|+|.+|.   +.+.+|.|.|+.......  ..........+.+.+.+|.|++.|.|+|+|.+.
T Consensus         3 ~~P~~l~~~~~~~~si~lsW~~p~---~~i~~Y~v~y~~~~~~~~--~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~   77 (94)
T 1j8k_A            3 DRPKGLAFTDVDVDSIKIAWESPQ---GQVSRYRVTYSSPEDGIH--ELFPAPDGEEDTAELQGLRPGSEYTVSVVALHD   77 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCS---SCCSCEEEEEEETTTEEE--EECCCCCSSCCEEEECSCCCCSEEEEEEEECSS
T ss_pred             CCCCccEEEeecCCEEEEEEcCCC---CCcceEEEEEEeCCCCCc--eEEecCCCCccEEEeCCCCCCCEEEEEEEEEcC
Confidence            578899999999999999999874   468899999987543100  000112345678999999999999999999999


Q ss_pred             CCCCCCCc
Q psy6638         137 LGMSETGA  144 (273)
Q Consensus       137 ~g~~~~s~  144 (273)
                      .|.+.+..
T Consensus        78 ~g~s~p~~   85 (94)
T 1j8k_A           78 DMESQPLI   85 (94)
T ss_dssp             SCCCCCEE
T ss_pred             CCcCCCEE
Confidence            88776543

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.19  E-value=4.2e-10  Score=72.80  Aligned_cols=87  Identities=15%  Similarity=0.367  Sum_probs=66.1

Q ss_pred             cCCCCCcceEEEEee--ccEEEEEEeCCCC---CCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeE
Q psy6638          54 ETPEAPKNIRITEES--SRSLQISWTAPYS---GNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~--~~~~~l~W~~~~~---~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      .+|.+|.++.+....  ...+.|+|.+|..   .++.+..|+|+|+..+. .|..    . .....+.+.+.+|.+++.|
T Consensus         6 vkp~pP~~l~v~~~~~~~~~l~lsW~~P~~w~~~~~~~l~Y~v~y~~~~~~~w~~----~-~~~~~~~~~l~~L~p~t~Y   80 (109)
T 1uc6_A            6 VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQH----V-ELSNGTAHTITDAYAGKEY   80 (109)
T ss_dssp             CCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCC----E-EESSCSEEEETTCCSSSCE
T ss_pred             EecCCCcceEEEEcCCCCCEEEEEECCCCCccCCCcEEEEEEEEEEECCCCCcEE----E-ecccCCEEEEeCCCCCCEE
Confidence            578999999888654  5789999998863   34567899999998754 4552    1 1234578999999999999


Q ss_pred             EEEEEEeCCCCCCCCCcce
Q psy6638         128 QVRLLAENPLGMSETGAEL  146 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~s~~~  146 (273)
                      .|+|+|.+. |.|.+|.+.
T Consensus        81 ~~~VRa~~~-g~g~wS~WS   98 (109)
T 1uc6_A           81 IIQVAAKDN-EIGTWSDWS   98 (109)
T ss_dssp             EEEEECCBS-SSCCCCCCC
T ss_pred             EEEEEEEeC-CCCCcCcCC
Confidence            999999975 655555544

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum}

Probab=99.19  E-value=2.9e-10  Score=72.28  Aligned_cols=95  Identities=18%  Similarity=0.171  Sum_probs=69.7

Q ss_pred             CCCCCeeEEecCCcc-CCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         155 PNGAPREVTSDPGVV-DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       155 p~~~p~~~~~~~~~~-~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      +|.+|.++.+..  . ....+.|+|.+..+      ..+|.|+.....+..       +..+.. .....+|+..+|.+|
T Consensus         4 ~P~aP~~l~a~~--~~~~~~v~LsW~~~~~------~~~Y~VyR~~~~~~~-------~~~i~~-~~~~tsy~d~~l~~g   67 (103)
T 3mpc_A            4 APAFPTGLSAVL--DSSGNTANLTWNAAPG------ANSYNVKRSTKSGGP-------YTTIAT-NITSTNYTDTGVATG   67 (103)
T ss_dssp             CCCCCEEEEEEE--CTTSCCEEEEEECCTT------CSEEEEEEESSTTCC-------CEEEEE-EECSSEEEETTCCTT
T ss_pred             CCCCCceeEEEE--eCCCCEEEEEEECCCC------CCEEEEEEecCCCCC-------cEEEee-cCCCCEEEECCCCCC
Confidence            445788888865  4 45799999999643      468999776543221       111111 112478999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                      +.|.|+|+|+|..|.|.+|..+.+.+....|.
T Consensus        68 ~~Y~Y~V~Avn~~geS~~S~~vs~~~~~~~~~   99 (103)
T 3mpc_A           68 TKYYYVVSAVSNGVETLNSAEAILQYPKLEHH   99 (103)
T ss_dssp             CCCEEEEEEEETTEECCCCCCEECBCCCCCC-
T ss_pred             CEEEEEEEEEeCcCCcCCCccEEEECCccccc
Confidence            99999999999888999999999988776654

>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*

Probab=99.19  E-value=2.7e-10  Score=82.07  Aligned_cols=187  Identities=19%  Similarity=0.177  Sum_probs=117.0

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCC--CCCCeEEEEEE
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPL--LPATQYQVRLL  132 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l--~~~~~y~~~v~  132 (273)
                      +..++++++.+ .+-...|.|+++... .....|.|+|+..+. .|.....+..  ...+.+.+..+  .....|.+||+
T Consensus         5 ~~~~qNv~~~S-~Nf~~iL~W~p~~~~-~~~~~YtVqy~~~~~~~W~~v~~C~~--it~t~CDlT~~~~d~~~~Y~~RVr   80 (211)
T 3dlq_R            5 SDLLQHVKFQS-SNFENILTWDSGPEG-TPDTVYSIEYKTYGERDWVAKKGCQR--ITRKSCNLTVETGNLTELYYARVT   80 (211)
T ss_dssp             GGTEEEEEEEE-ETTEEEEEEEECTTC-CSSEEEEEEEEETTCCCCEECTTCSS--BSSSEEECTGGGCCTTCCEEEEEE
T ss_pred             ccCccccEEEE-ECCeeEEEECCCCCC-CCCeEEEEEEEECCCCCceeccccCC--CCCCEEeCCcccccCCccEEEEEE
Confidence            44667777666 366778999987543 246689999998654 6764333322  24567777653  45678999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCc--cc---------eeeeEEEEEEEcC
Q psy6638         133 AENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESW--NG---------VLLGYDVGYQISS  201 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~--~~---------~i~~y~v~~~~~~  201 (273)
                      |..+.+.+.|+....|.......-+|| .+.+..   ...+|.|.-.+|.....  +|         ....|.|.|+..+
T Consensus        81 A~~g~~~S~w~~s~~F~p~~~t~igPP-~v~l~~---~~~~l~V~i~~P~~~~~~~~g~~~sl~di~~~l~Y~V~~~~~~  156 (211)
T 3dlq_R           81 AVSAGGRSATKMTDRFSSLQHTTLKPP-DVTCIS---KVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNR  156 (211)
T ss_dssp             EEETTSCEEEEECCCBCHHHHCBCCCC-CEEEEE---CSSEEEEEECCCBCSCCC----CCBHHHHCTTCEEEEEEEC--
T ss_pred             EEeCCCcCCceeeeeEEehhcceeCCC-EEEEEE---cCCEEEEEEECCCCccccCCCceeEHHHhcCCcEEEEEEEECC
Confidence            998766665554444443222333345 466655   55689999888764211  11         2358999999876


Q ss_pred             CCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecC--CCcCCCCccEEEEcCCC
Q psy6638         202 GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS--VGKGPFSEPFIARTNEG  262 (273)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~--~g~~~~s~~~~~~t~~~  262 (273)
                      ...      ..  ..   .....+.|.+|.|++.|-|+|+++..  ...+++| .-.+.|.++
T Consensus       157 s~~------k~--~~---~~~~~~~l~~L~p~t~YCv~v~~~~~~~~k~S~~s-~C~~~t~~~  207 (211)
T 3dlq_R          157 TYQ------MH--LG---GKQREYEFFGLTPDTEFLGTIMILVPTWAKESAPY-MCRVKTLPD  207 (211)
T ss_dssp             --C------EE--EE---ESSSEEEEESCCTTCEEEEEEEEEEGGGTEECCCE-EEEEECCCC
T ss_pred             CcE------EE--Ee---cCCCEEEEccCCCCCcEEEEEEEEEcCCCCCCCCc-EeEEEeCCC
Confidence            421      11  11   12368899999999999999999853  3345555 222667664

>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I

Probab=99.15  E-value=7e-09  Score=75.95  Aligned_cols=189  Identities=14%  Similarity=0.169  Sum_probs=120.6

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC---CCCCCccceEEecCCccEEEecCCC--CCCeEEEEEE
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE---EMWPTQPLKIIVPGSQTSATLQPLL--PATQYQVRLL  132 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~y~~~v~  132 (273)
                      +|.++++.+. +....|.|+++...  ....|.|+|+..+   ..|..    .+.+...+.+.+.+..  ....|.+||+
T Consensus        14 ~P~NV~~~S~-Nf~~iL~W~p~~~~--~~~~YtVqy~~y~~~~~~W~~----~C~~it~~~CDlT~~~~d~~~~y~~RVr   86 (229)
T 1fyh_B           14 TPTNVTIESY-NMNPIVYWEYQIMP--QVPVFTVEVKNYGVKNSEWID----ACINISHHYCNISDHVGDPSNSLWVRVK   86 (229)
T ss_dssp             CCEEEEEECB-SSCCEEEEECCCCS--SCCEEEEEEEETTCSSSCCEE----EEEEESSSEEECGGGCCSTTSCEEEEEE
T ss_pred             CCcEEEEEEE-CCeeEEEECCCCCC--CCeEEEEEEEeccCccchhHh----hCcCCCCCEEeCCCccccCceeEEEEEE
Confidence            6778877764 55568999987542  2468999999754   36872    3333456778876643  5678999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCc--c----------ceeeeEEEEEEEc
Q psy6638         133 AENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESW--N----------GVLLGYDVGYQIS  200 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~--~----------~~i~~y~v~~~~~  200 (273)
                      |..+...+.|.....|.......-+||. +.+..   ....|.|.-.+|.....  .          .....|.|.++..
T Consensus        87 A~~g~~~S~w~~s~~F~p~~~t~igPP~-v~l~~---~~~~i~V~i~~P~~~~~g~~~~l~~~~~~~~~~~~Y~v~~~~~  162 (229)
T 1fyh_B           87 ARVGQKESAYAKSEEFAVCRDGKIGPPK-LDIRK---EEKQIMIDIFHPSVFVNGDEQEVDYDPETTCYIRVYNVYVRMN  162 (229)
T ss_dssp             EEETTEECCCEECCCBCHHHHSBCCCCE-EEEEE---CSSEEEEEEECCGGGC-----------CCSCSEEEEEEEEEET
T ss_pred             EEcCCcccCCEeccceeeeeeeEECCCe-EEEEE---eCCEEEEEEeCCCcccCCCcceeeecCcccccceEEEEEEEEC
Confidence            9987666766655444444333334553 66655   45588888888764210  0          1123899999886


Q ss_pred             CCCCccceeeeeeeEE--ecCC--cccEEEcCCCCccceEEEEEEEecC--CCcCCCCccEEEEcCCCC
Q psy6638         201 SGSSLALSSYTLKSVE--LDNQ--YEGELRIPGLTPYTKYAIVVRGYNS--VGKGPFSEPFIARTNEGD  263 (273)
Q Consensus       201 ~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~~L~p~~~Y~~~v~a~n~--~g~~~~s~~~~~~t~~~~  263 (273)
                      ++..      ......  ....  ....+.|.+|.|++.|-|+|++...  .-.|.+|+..-+.|.++.
T Consensus       163 ~s~~------~~~~~~~~~~~~~~~~~~~~i~~L~p~t~YCv~v~~~~~~~~k~s~~S~~~Ci~t~~~~  225 (229)
T 1fyh_B          163 GSEI------QYKILTQKEDDCDEIQCQLAIPVSSLNSQYCVSAEGVLHVWGVTTEKSKEVCITIFNSS  225 (229)
T ss_dssp             TEEE------EEEEESSSCTTBCSSEEEEEEECCTTCCEEEEEEEEEETTTCCBCCCCCCEEEECCC--
T ss_pred             CCCe------eEEEEeecccCccccceeEEEeeCCCCCeEEEEEEEEeccCCccCCCCCCEeEecCCCc
Confidence            5421      111100  0011  1234888999999999999999742  345888998888887643

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A

Probab=99.15  E-value=1.6e-10  Score=71.96  Aligned_cols=76  Identities=17%  Similarity=0.357  Sum_probs=58.1

Q ss_pred             eEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEE
Q psy6638         161 EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVV  240 (273)
Q Consensus       161 ~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v  240 (273)
                      .+++..  .+++++.|+|+++.     +.+.+|.|.|....+...      ..... .+...++++|.+|.|++.|.|.|
T Consensus        11 ~l~vt~--vt~~S~~lsW~~p~-----~~v~~Y~I~y~~~~g~~~------~~~~~-v~g~~~s~~l~~L~PgT~Y~V~v   76 (95)
T 2h41_A           11 SESVTE--ITASSFVVSWVSAS-----DTVSGFRVEYELSEEGDE------PQYLD-LPSTATSVNIPDLLPGRKYIVNV   76 (95)
T ss_dssp             TTSCCC--CGGGCEEEECCCSC-----TTEEEEEEEEEETTTCCC------CEEEE-EETTCCEEEECSCCTTCEEEEEE
T ss_pred             EEEEEE--eCCCeEEEEECCCC-----CCccEEEEEEEeCCCCCc------ceEEE-CCCCccEEEECCCCCCCEEEEEE
Confidence            455666  78899999999984     578999999998765321      01222 34457899999999999999999


Q ss_pred             EEecCCCcCC
Q psy6638         241 RGYNSVGKGP  250 (273)
Q Consensus       241 ~a~n~~g~~~  250 (273)
                      .|++..+.+.
T Consensus        77 ~a~~~~~~S~   86 (95)
T 2h41_A           77 YQISEDGEQS   86 (95)
T ss_dssp             EEEETTSCEE
T ss_pred             EEEcCCCccc
Confidence            9999766654

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B*

Probab=99.13  E-value=4.5e-09  Score=76.32  Aligned_cols=99  Identities=14%  Similarity=0.222  Sum_probs=71.8

Q ss_pred             ecCCCCCcceEEEEee-ccEEEEEEeCCCCCCc--cceEEEEEEEeCC--CCCCCccceEEecCCccEEEecCCCCCCeE
Q psy6638          53 QETPEAPKNIRITEES-SRSLQISWTAPYSGNT--AITQYIIQYKSSE--EMWPTQPLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~-~~~~~l~W~~~~~~~~--~~~~y~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      ..+|.||.++.+.... ...+.|+|.+|.....  ....|+|+|+...  ..|..    .........+.+.+|.|++.|
T Consensus       110 iVKPdPP~nLtv~~~~~~~~l~LsW~~P~~~~~~~~~L~YEVrYr~~~~~~~W~~----v~~~~t~~~i~l~~L~Pgt~Y  185 (223)
T 3up1_A          110 IVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTH----VNLSSTKLTLLQRKLQPAAMY  185 (223)
T ss_dssp             SBCCCCCEEEEEEEETTTTEEEEEEECGGGGCSSSCCEEEEEEEEESSCSSCCEE----EEESSSEEEEEGGGSCTTCEE
T ss_pred             eEEcCCCcceEEEEEcCCCCEEEEECCCCCCCCcceeEEEEEEEEeCCCCCceEE----EEecCceeEEeccccCCCcEE
Confidence            5789999999887764 4679999998753222  2579999999863  45652    222222334556799999999


Q ss_pred             EEEEEEeCC----CCCCCCCcceEEEecCCCC
Q psy6638         128 QVRLLAENP----LGMSETGAELQASTLEEAP  155 (273)
Q Consensus       128 ~~~v~a~~~----~g~~~~s~~~~~~~~~~~p  155 (273)
                      .|+|+|...    .++|.||.++.+.+...+|
T Consensus       186 ~vqVR~r~~~~~~G~WSeWS~~~~~~T~~~~P  217 (223)
T 3up1_A          186 EIKVRSIPDHYFKGFWSEWSPSYYFRTPEINN  217 (223)
T ss_dssp             EEEEEEEECSSCCBCCCCCCCCEEEECCCCC-
T ss_pred             EEEEEEeeCCCCCCCCCCCCCCeEEECCCCCC
Confidence            999999864    2478899989999876655

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B*

Probab=99.12  E-value=3.6e-09  Score=76.96  Aligned_cols=98  Identities=19%  Similarity=0.259  Sum_probs=74.5

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCC--ccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGN--TAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~--~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      .||.++.+.......+.|+|..|....  ..+..|+|.|+..+..|... .........+.+.+.+|.|++.|.++|+|.
T Consensus       107 ~pP~~l~~~~~~~~~l~lsW~~p~~~~~~~~~l~Yevry~~~~~~w~~~-~~~~~~~~~~~~~l~~L~p~t~Y~vqVRa~  185 (214)
T 2b5i_B          107 MAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEA-PLLTLKQKQEWICLETLTPDTQYEFQVRVK  185 (214)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTS-CCEEECSCCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCceEEEEEecCCeEEEEECCCCccccCCCceEEEEEEecCCCChhee-eeeeecccceEEEeccCCCCCEEEEEEEEe
Confidence            999999988877789999999885421  23679999999887777643 233344456788999999999999999998


Q ss_pred             CCCC----CCCCCcceEEEecCCCC
Q psy6638         135 NPLG----MSETGAELQASTLEEAP  155 (273)
Q Consensus       135 ~~~g----~~~~s~~~~~~~~~~~p  155 (273)
                      ...|    +|.||..+.+.+.+..|
T Consensus       186 ~~~~~~G~WS~WS~~~~~~T~~~~~  210 (214)
T 2b5i_B          186 PLQGEFTTWSPWSQPLAFRTKPAAL  210 (214)
T ss_dssp             ESCCSSCCCCCCCCCEEEECCC---
T ss_pred             eCCCCCCCccCCCCCEEEEcCCCCc
Confidence            6533    58888889998876554

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.11  E-value=2.5e-09  Score=76.85  Aligned_cols=91  Identities=25%  Similarity=0.398  Sum_probs=72.5

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      ++.+|.++.+...+..++.|+|.+|.   +.+..|.|.|........  ......+...+++.+.+|.|++.|.|+|+|.
T Consensus       103 ~~~~P~~l~v~~~t~~si~l~W~~p~---~~i~~Y~v~y~~~~~~~~--~~~~~v~~~~t~~~l~gL~p~t~Y~~~V~A~  177 (195)
T 2qbw_A          103 VSSVPTNLEVVAATPTSLLISWDASY---YGVSYYRITYGETGGNSP--VQEFTVPYSSSTATISGLKPGVDYTITVYAY  177 (195)
T ss_dssp             -CCSSCCCEEEEEETTEEEEECCCCC---SSCSEEEEEEEETTCCSC--CEEEEEETTCSEEEECSCCTTCEEEEEEEEE
T ss_pred             cCCCCcccEEEeCCCCEEEEEEeCCC---CCccEEEEEEEECCCCCc--ceEEEeCCCCCEEEeCCCCCCCEEEEEEEEE
Confidence            35678899999999999999999874   458899999987654321  1233455667899999999999999999999


Q ss_pred             CCCCCCCCCcceEEEe
Q psy6638         135 NPLGMSETGAELQAST  150 (273)
Q Consensus       135 ~~~g~~~~s~~~~~~~  150 (273)
                      +..|.+..|..+.++.
T Consensus       178 ~~~G~g~~S~~v~~~~  193 (195)
T 2qbw_A          178 SDYYGSHHYSPISINY  193 (195)
T ss_dssp             SSTTSSCBCCCEEEEE
T ss_pred             eCCccCCCCCCEEEEe
Confidence            9999998887776654

>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.11  E-value=2.5e-09  Score=63.38  Aligned_cols=80  Identities=19%  Similarity=0.282  Sum_probs=67.3

Q ss_pred             cCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCc
Q psy6638         169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK  248 (273)
Q Consensus       169 ~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~  248 (273)
                      ..+++..|.|..+..    .+|..|.+.|+......      .|+++.+.+ ...+|+|.+|+|+..|+.+|.++|..|.
T Consensus        18 s~pdsh~iqW~~~s~----s~I~eyiL~~R~k~~~g------~Wke~~Ip~-h~nSYtI~GL~P~~~YE~qv~S~~ryG~   86 (98)
T 1oww_A           18 SQPNSHPIQWNAPQP----SHISKYILRWRPKNSVG------RWKEATIPG-HLNSYTIKGLKPGVVYEGQLISIQQYGH   86 (98)
T ss_dssp             SCTTCEEEEEECCSS----SCEEEEEEEEEETTCSS------CCEEEEECS-SCCEEEECSCCSSEEEEEEEEEEESSSC
T ss_pred             CCCCccceEEecCCC----CCceEEEEEEEEcCCCC------ceeEEEecC-ccceEEEecCCCCcEEEEEEEEeeccCc
Confidence            358899999999864    57999999999987643      466766655 4789999999999999999999999999


Q ss_pred             CCCCccEEEEcC
Q psy6638         249 GPFSEPFIARTN  260 (273)
Q Consensus       249 ~~~s~~~~~~t~  260 (273)
                      ++.+ .+.|.|.
T Consensus        87 ~Evs-~f~FtT~   97 (98)
T 1oww_A           87 QEVT-RFDFTTT   97 (98)
T ss_dssp             EEEE-EEEEEEC
T ss_pred             ccce-EEEEEec
Confidence            9888 7777763

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}

Probab=99.11  E-value=8.8e-09  Score=74.29  Aligned_cols=129  Identities=17%  Similarity=0.147  Sum_probs=92.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEE-EEEE--ecCCCCCcceEEEEeeccEEEEEEeCCCCCC-c---------
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTI-QLLV--QETPEAPKNIRITEESSRSLQISWTAPYSGN-T---------   84 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~-~~~~--~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~-~---------   84 (273)
                      +...|.++.+...|.++++|.++.|.+.... .+..  ...+.|| .+.+ ....+++.|.|.+|...+ +         
T Consensus        53 ~~c~lt~l~~~~~Y~~rV~A~~~~~~S~~s~~~f~~~~~t~~~PP-~v~~-~~~~~si~v~w~~P~~~~~~~~~~~~~~~  130 (201)
T 3lqm_A           53 TECDFSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPP-GMQV-EVLADCLHMRFLAPKIENEYETWTMKNVY  130 (201)
T ss_dssp             SEEECTTSCSSSCEEEEEEEEETTEECCCEEEEECHHHHSBCCCC-EEEE-EEETTEEEEEEECCEEECSSCEEEHHHHC
T ss_pred             CEEECCCCccCCCEEEEEEEecCCCcCcceeeeeeecccCeeCCC-EEEE-EEeCCEEEEEEcCCCccCCCcccCHHHhC
Confidence            4677888888899999999999876544322 2111  3556777 5666 445789999999885322 2         


Q ss_pred             cceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC--CCCCCCCcceEEEecCC
Q psy6638          85 AITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP--LGMSETGAELQASTLEE  153 (273)
Q Consensus        85 ~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~--~g~~~~s~~~~~~~~~~  153 (273)
                      .+..|.|.+...+..-.     .........+.+.+|+|++.|.|+|+|...  .|.|.+|....+.+..+
T Consensus       131 ~~l~Y~v~y~~~~~~~~-----~~~~~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~~~  196 (201)
T 3lqm_A          131 NSWTYNVQYWKQGTDEK-----FQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHD  196 (201)
T ss_dssp             TTCEEEEEEEETTCCCC-----EEECCSSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCCCEEEECCCG
T ss_pred             CceEEEEEEEECCCCcE-----EEEEecCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCCCEeEEeCCC
Confidence            36799998877654311     123345678899999999999999999975  57888888888887654

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C*

Probab=99.11  E-value=1.4e-08  Score=73.09  Aligned_cols=124  Identities=15%  Similarity=0.198  Sum_probs=81.6

Q ss_pred             EEEeeeeeCCCEEEEEEEEcCCCCceeEE-EEEE--ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC
Q psy6638          20 LGIANVLRQDSGTLSCLATNYHGTAEMTI-QLLV--QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS   96 (273)
Q Consensus        20 l~i~~~~~~~~~~y~~~a~n~~g~~~~~~-~~~~--~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~   96 (273)
                      ..+..........|.+.+.+..|...... .+.+  ...|.||.++.+.......+.|+|..|.. . ....|+|+++..
T Consensus        60 C~~~~~~~~~~~~~~i~v~~~~g~~~s~~~~~~~~~iVkP~pP~~l~~~~~~~~~l~l~W~~p~~-~-~~l~yev~y~~~  137 (199)
T 2b5i_C           60 CQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFL-N-HCLEHLVQYRTD  137 (199)
T ss_dssp             EEEEGGGCCTTSCEEEEEECSSCTTCEEEEEECGGGSEECCCCEEEEEEEEETTEEEEEEECSSC-S-TTCEEEEEEEET
T ss_pred             EEECCcccccceEEEEEEEeCCcceecceEEEchHHceecCCCcEEEEEECCCCCEEEEECCCCC-C-CceEEEEEEeec
Confidence            33333333333456666666556544322 2222  45799999999888777899999998852 2 345899999986


Q ss_pred             CC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCC-----C-CCCCCcceEEEe
Q psy6638          97 EE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL-----G-MSETGAELQAST  150 (273)
Q Consensus        97 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~-----g-~~~~s~~~~~~~  150 (273)
                      .. .|..    . .....+.+.+.+|.|++.|.|+|+|....     | +|.||.++.+.+
T Consensus       138 ~~~~w~~----~-~~~~~~~~~l~~l~p~~~Y~vqVR~~~~~~~~~~g~WSeWS~~~~~~t  193 (199)
T 2b5i_C          138 WDHSWTE----Q-SVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGS  193 (199)
T ss_dssp             TCSSCEE----E-EECSSCEEEECSCCTTSCEEEEEEEECCSSSCCCCCCCCCCCCEEC--
T ss_pred             CCcccEE----E-eccCceEEEecCCCCCcEEEEEEEEeccCCcCcCCeECCCCCCEEecC
Confidence            44 5652    1 12345788899999999999999999743     2 566666666554

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B*

Probab=99.06  E-value=8.8e-10  Score=79.94  Aligned_cols=103  Identities=17%  Similarity=0.222  Sum_probs=62.3

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCC---CccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSG---NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQV  129 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~---~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~  129 (273)
                      ...|.||.++.+.......+.|+|.+|...   ......|+|+++..+..|...............+.+.+|.|++.|.+
T Consensus        95 iVkp~PP~nl~~~~~~~~~l~l~W~~p~~~~~~~~~~L~yev~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~~Y~v  174 (207)
T 1iar_B           95 HVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRA  174 (207)
T ss_dssp             SBCCCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEE
T ss_pred             ccccCCCCCeEEEEccCCCEEEEECCCCCccccccccEEEEEEEccCCCchhheeeeeecCCcEEEEEHHHCCCCCEEEE
Confidence            578999999988754566899999987431   12346899999988776652211111222334455578999999999


Q ss_pred             EEEEeCC--CC-CCCCCcceEEEecCCCC
Q psy6638         130 RLLAENP--LG-MSETGAELQASTLEEAP  155 (273)
Q Consensus       130 ~v~a~~~--~g-~~~~s~~~~~~~~~~~p  155 (273)
                      +|+|...  .| +|.||.++.+.+....|
T Consensus       175 qVR~k~~~~~G~WSeWS~~~~~~t~~~~p  203 (207)
T 1iar_B          175 RVRAWAQAYNTTWSEWSPSTKWHNSYREP  203 (207)
T ss_dssp             EEEEECGGGTCCCCCCCCCEEEC------
T ss_pred             EEEEecCCCCCCCCCCCcCeEEECCCCcc
Confidence            9999864  45 78888888888865544

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1

Probab=99.05  E-value=2.5e-08  Score=74.17  Aligned_cols=116  Identities=16%  Similarity=0.225  Sum_probs=79.8

Q ss_pred             EEEEEEEcCCCCcee-EEEEEE--ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceE
Q psy6638          32 TLSCLATNYHGTAEM-TIQLLV--QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKI  107 (273)
Q Consensus        32 ~y~~~a~n~~g~~~~-~~~~~~--~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~  107 (273)
                      .|.+.+.+..|.... ...+.+  ...|.||.++.+.......+.|+|..|..  .....|+|+|+.... .|..    .
T Consensus       110 ~y~i~V~~~~g~~~s~~~~~~~~~iVkP~PP~nl~v~~~~~~~l~l~W~~P~~--~~~L~Yevry~~~~~~~W~~----~  183 (247)
T 2erj_C          110 TFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFL--NHCLEHLVQYRTDWDHSWTE----Q  183 (247)
T ss_dssp             CEEEEEECSSCTTCEEEEEECGGGSEECCCCEEEEEEESSSSCEEEEEECSSC--CTTEEEEEEEECSSCSSCEE----E
T ss_pred             EEEEEEEECCCccccceEEEchhHeEEeCCCCeEEEEECCCCcEEEEECCCCC--CCcEEEEEEEeeCCCCCCEE----E
Confidence            466666665565533 222222  46799999998887777899999998853  234589999998644 5652    1


Q ss_pred             EecCCccEEEecCCCCCCeEEEEEEEeCCC-----C-CCCCCcceEEEecCCC
Q psy6638         108 IVPGSQTSATLQPLLPATQYQVRLLAENPL-----G-MSETGAELQASTLEEA  154 (273)
Q Consensus       108 ~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~-----g-~~~~s~~~~~~~~~~~  154 (273)
                      . ....+.+.+.+|.+++.|.|+|++....     | +|.||.++.+.+....
T Consensus       184 ~-~~~~~~~~l~~L~p~~~Y~vqVR~k~~~~~~~~g~WSeWS~~~~~~t~~~~  235 (247)
T 2erj_C          184 S-VDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSK  235 (247)
T ss_dssp             E-ECSSCEEEESCCCTTSCEEEEEEEEECSSSCCCCCCCCCCCCEEECC----
T ss_pred             e-cCCceEEEecCCCCCCEEEEEEEEEeCCCCCCCCccCCCCcCEEEECCCCC
Confidence            1 2345788899999999999999998743     2 6778877777765443

>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.04  E-value=3.3e-09  Score=65.26  Aligned_cols=91  Identities=18%  Similarity=0.278  Sum_probs=65.2

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCcc-ceeeeeeeEEecCCcccEEEcC-------
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLA-LSSYTLKSVELDNQYEGELRIP-------  228 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~-------  228 (273)
                      +.|..+++..   +...++|+|+||..  .+|.|..|.|++......... .....+..+....  ..++++.       
T Consensus         9 gAPs~ikIsK---~~dgahLsWePP~~--~sG~I~EYSVYlAvrs~~~~~~~~qL~FvrVYcG~--~~~C~V~~~~L~~a   81 (123)
T 1wft_A            9 GAPSTVRISK---NVDGIHLSWEPPTS--PSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGL--KTSCTVTAGQLANA   81 (123)
T ss_dssp             CCCEEEEEEE---CSSEEEEEEECCSS--CCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEES--CSEEEEEHHHHTTC
T ss_pred             CCCcceEEee---CCCceEEeecCCCC--CCcccEEEEEEEEecccccCCCcCeeeEEEEEecC--CcceEecccchhhh
Confidence            5788899876   78899999999987  478999999999887643211 1112222222222  3556555       


Q ss_pred             --CCCccceEEEEEEEecCCCcCCCCcc
Q psy6638         229 --GLTPYTKYAIVVRGYNSVGKGPFSEP  254 (273)
Q Consensus       229 --~L~p~~~Y~~~v~a~n~~g~~~~s~~  254 (273)
                        ++.+-..|.|||+|.|.+|.|+.++.
T Consensus        82 hid~t~kpAiiFRIaArNeKGYGPaTqV  109 (123)
T 1wft_A           82 HIDYTSRPAIVFRISAKNEKGYGPATQI  109 (123)
T ss_dssp             CCBCSSSCEEEEEEEEBSSSSBCCCEEE
T ss_pred             hhccCCCceEEEEEEeecCCCCCCcccc
Confidence              66666699999999999999988753

>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine receptor, sugarbridge, fibronectine domain, signaling, cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC; 2.80A {Homo sapiens}

Probab=99.01  E-value=3e-08  Score=72.49  Aligned_cols=119  Identities=22%  Similarity=0.332  Sum_probs=81.6

Q ss_pred             EEEEEEEEcCCCCceeE-EEEEE--ecCCCCCcceEEEEeeccEEEEEEeCCCCC---C--ccceEEEEEEEeCCCCCCC
Q psy6638          31 GTLSCLATNYHGTAEMT-IQLLV--QETPEAPKNIRITEESSRSLQISWTAPYSG---N--TAITQYIIQYKSSEEMWPT  102 (273)
Q Consensus        31 ~~y~~~a~n~~g~~~~~-~~~~~--~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~---~--~~~~~y~v~~~~~~~~~~~  102 (273)
                      ..|.+.+.+..|..... ..+.+  ...|.||.++.+.  ....+.|+|..|...   .  .....|+|.|+..+..|..
T Consensus        73 ~~y~v~v~~~~g~~~s~~~~f~~~~iVkp~PP~nltv~--~~~~l~lsW~~P~~~p~~~~~~~~L~Yevryr~~~~~W~~  150 (219)
T 3tgx_A           73 DIFSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTVT--FSGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAV  150 (219)
T ss_dssp             CEEEEEEECTTSSCEEEEEEEEGGGCBCCCCCEEEEEE--ESSSEEEEEECGGGSGGGGGGTTSEEEEEEEEETTSCTTS
T ss_pred             ceEEEEEEeCCCCEEecCceEeeeeeEEeCCCCceEEE--eCCCEEEEEeCCcCCccccccccCEEEEEEEecCCCCcee
Confidence            36667777777765442 22222  5789999998887  357899999987431   1  1346899999998878864


Q ss_pred             ccceEEe--cCCccEEEecCCCCCCeEEEEEEEeCCC-----C-CCCCCcceEEEec
Q psy6638         103 QPLKIIV--PGSQTSATLQPLLPATQYQVRLLAENPL-----G-MSETGAELQASTL  151 (273)
Q Consensus       103 ~~~~~~~--~~~~~~~~~~~l~~~~~y~~~v~a~~~~-----g-~~~~s~~~~~~~~  151 (273)
                      .......  ......+.+.+|.|++.|.|+|+|....     | +|.||.++.+.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~L~p~t~Y~vqVRa~~~~g~~~~G~WSeWS~~~~~~T~  207 (219)
T 3tgx_A          151 SPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQ  207 (219)
T ss_dssp             CCEEEEECSSCSEEEECTTSSCSSCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECC
T ss_pred             cccceeEecCCCEEEEEeccCCCCCEEEEEEEEeeCCCCCCCCcCcCCCCCeEEECC
Confidence            2211122  2234566678999999999999998664     3 5677887888774

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum}

Probab=98.96  E-value=1.1e-08  Score=64.94  Aligned_cols=92  Identities=15%  Similarity=0.153  Sum_probs=68.9

Q ss_pred             cCCCCCcceEEEEe-eccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          54 ETPEAPKNIRITEE-SSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        54 ~~P~~p~~~~~~~~-~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      .+|.+|.++.+... ..+.+.|+|.+..    ...+|.|+..... ..|.    .+......+++...+|.+++.|.|+|
T Consensus         3 ~~P~aP~~l~a~~~~~~~~v~LsW~~~~----~~~~Y~VyR~~~~~~~~~----~i~~~~~~tsy~d~~l~~g~~Y~Y~V   74 (103)
T 3mpc_A            3 SAPAFPTGLSAVLDSSGNTANLTWNAAP----GANSYNVKRSTKSGGPYT----TIATNITSTNYTDTGVATGTKYYYVV   74 (103)
T ss_dssp             CCCCCCEEEEEEECTTSCCEEEEEECCT----TCSEEEEEEESSTTCCCE----EEEEEECSSEEEETTCCTTCCCEEEE
T ss_pred             cCCCCCceeEEEEeCCCCEEEEEEECCC----CCCEEEEEEecCCCCCcE----EEeecCCCCEEEECCCCCCCEEEEEE
Confidence            57889999888775 4678999999853    3579999887643 3443    11112356789999999999999999


Q ss_pred             EEeCCCCCCCCCcceEEEecCC
Q psy6638         132 LAENPLGMSETGAELQASTLEE  153 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~~~  153 (273)
                      .|++..|.|.++..+.+.+...
T Consensus        75 ~Avn~~geS~~S~~vs~~~~~~   96 (103)
T 3mpc_A           75 SAVSNGVETLNSAEAILQYPKL   96 (103)
T ss_dssp             EEEETTEECCCCCCEECBCCCC
T ss_pred             EEEeCcCCcCCCccEEEECCcc
Confidence            9999878888888777666443

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=98.94  E-value=1.4e-08  Score=78.13  Aligned_cols=111  Identities=18%  Similarity=0.191  Sum_probs=76.5

Q ss_pred             CCEEEEEEEEcCCCCceeEEEEEE--ecCCCCCcceEEEEee-ccEEEEEEeCCCCCCccc----eEEEEEEEeCCC-CC
Q psy6638          29 DSGTLSCLATNYHGTAEMTIQLLV--QETPEAPKNIRITEES-SRSLQISWTAPYSGNTAI----TQYIIQYKSSEE-MW  100 (273)
Q Consensus        29 ~~~~y~~~a~n~~g~~~~~~~~~~--~~~P~~p~~~~~~~~~-~~~~~l~W~~~~~~~~~~----~~y~v~~~~~~~-~~  100 (273)
                      ..|.++|.|.|..|.......+.+  ..+|+||.++.+.... ...+.|+|.+|...+.+.    ..|+|+|+..+. .|
T Consensus       184 ~~y~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~~~  263 (306)
T 3d85_D          184 LPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREK  263 (306)
T ss_dssp             SCEEEEEEEEETTEEEEEEEEECHHHHBCCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC-----
T ss_pred             EEEEEEEEEEccCCccccceEEEehhcEecCCCceEEEEEecCCCcEEEEEcCCCCCcCCCceeeEEEEEEEEECCCCcc
Confidence            478899999999986555543333  5789999999888743 378999999986544333    689999997653 34


Q ss_pred             CCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceE
Q psy6638         101 PTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQ  147 (273)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~  147 (273)
                      ...     .....+++.+   .+++.|.|+|+|.+..|.|.||.+..
T Consensus       264 ~~~-----~~~~~ts~~l---~~~~~Y~vqVRa~~~~~~G~WSeWS~  302 (306)
T 3d85_D          264 KDR-----VFTDKTSATV---ICRKNASISVRAQDRYYSSSWSEWAS  302 (306)
T ss_dssp             -CE-----EEESSSEEEE---CCCSSCEEEEEEEESSSCCCCCCCEE
T ss_pred             EEE-----eeccccEEEE---eCCCeEEEEEEeccCCCCCCCCCCCC
Confidence            321     1223456665   35999999999999878778877654

>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor complex, immune system; 2.52A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R

Probab=98.91  E-value=5e-07  Score=65.42  Aligned_cols=185  Identities=14%  Similarity=0.103  Sum_probs=113.3

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecC--CCCCC--eEEEEE
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQP--LLPAT--QYQVRL  131 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--l~~~~--~y~~~v  131 (273)
                      .+|+++++.+. +-...|.|+++.. ......|.|+|+..+. .|.....+  ....  .+.+.+  +....  .|.+||
T Consensus         6 p~P~NV~~~S~-Nf~~iL~W~p~~~-~~~~~~YtVqy~~~~~~~W~~~~~C--~~it--~CDlT~~~~d~~~~~~y~~RV   79 (214)
T 1y6k_R            6 PSPPSVWFEAE-FFHHILHWTPIPQ-QSESTCYEVALLRYGIESWNSISQC--SQTL--SYDLTAVTLDLYHSNGYRARV   79 (214)
T ss_dssp             CCCSCEEEEEE-TTEEEEEECCCTT-CCTTCEEEEEEEETTSCCCEEEEEE--ESSS--EEECGGGGTTGGGSSCEEEEE
T ss_pred             CCCceeEEEEE-cCcEEEEECCCCC-CCCCeEEEEEEEEcCCCCCeeCCCC--Cccc--eEECCCcccccccCccEEEEE
Confidence            36788887764 6677899998754 3345689999998654 47643322  2223  777765  34433  899999


Q ss_pred             EEeCCCCCCCCCcc-eEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCcc-ce-----e---eeEEEEEEEcC
Q psy6638         132 LAENPLGMSETGAE-LQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWN-GV-----L---LGYDVGYQISS  201 (273)
Q Consensus       132 ~a~~~~g~~~~s~~-~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~-~~-----i---~~y~v~~~~~~  201 (273)
                      +|..+...+.|... ..|... ...-+|| .+.+..   ...+|.|...+|...... ..     .   ..|.+.++...
T Consensus        80 rA~~~~~~S~w~~s~~~F~p~-~t~igPP-~v~l~~---~~~~l~V~i~~P~~~~~~~~~~y~~~f~~~~~y~~~~~k~~  154 (214)
T 1y6k_R           80 RAVDGSRHSQWTVTNTRFSVD-EVTLTVG-SVNLEI---HNGFILGKIQLPRPKMAPAQDTYESIFSHFREYEIAIRKVP  154 (214)
T ss_dssp             EEEETTEECCCEECSSCBCGG-GEEBCCS-EEEEEE---CSSEEEEEEECCCCSSSCTTCCHHHHSCSCEEEEEEEEEES
T ss_pred             EEecCCcccCCEecCCceeec-ccEECCC-eEEEEE---eCCEEEEEEECCCcccccchhhhhheeccccEEEEEEEccc
Confidence            99988777776654 345544 4333456 466655   556999999988642111 10     1   24888877654


Q ss_pred             CCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCC--CcCCCCccEEEEcCC
Q psy6638         202 GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSV--GKGPFSEPFIARTNE  261 (273)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~--g~~~~s~~~~~~t~~  261 (273)
                      +.. +     ...... .  ...+.+..+.+++.|-|+|++.-..  -.|.+|+..-+.+..
T Consensus       155 ~~~-~-----~~~~~~-~--~~~l~~~~p~~~t~YCv~v~~~~~~~~~~s~~S~~~C~~~~~  207 (214)
T 1y6k_R          155 GQF-T-----FTHKKV-K--HEQFSLLTSGEVGEFCVQVKPSVASRSNKGMWSKEECISLTR  207 (214)
T ss_dssp             SCS-C-----CEEEEE-S--SSEEEEECCSCCSEEEEEEEEEETTCCCCBCCCCCEEEECC-
T ss_pred             ccC-c-----ccceee-e--eeeeeccCCCCCCeEEEEEEEEeccCCCcCCCCCCEeEEcCC
Confidence            321 1     011000 0  1234555566699999999987421  136778877776654

>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*

Probab=98.91  E-value=6e-09  Score=85.12  Aligned_cols=87  Identities=25%  Similarity=0.383  Sum_probs=68.1

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      .|.++++..  .+.++++|+|.+|    +++.+..|+|.|.+.+....       ..........++++|.+|+|++.|.
T Consensus       372 ~~~~l~~~~--~~~~s~~l~W~~p----~~~~~~~y~v~y~~~~~~~~-------~~~~~~~~~~~~~~i~~L~p~t~Y~  438 (461)
T 3csg_A          372 VPTNLEVVA--ATPTSLLISWDAS----YSSSVSYYRITYGETGGNSP-------VQEFTVPGSKSTATISGLSPGVDYT  438 (461)
T ss_dssp             SSCCCEEEE--ECSSCEEEECCCT----TGGGCSEEEEEEEETTCCSC-------CEEEEEETTCCEEEECSCCTTCEEE
T ss_pred             CCcceEEec--cCCCeEEEEecCC----CCCcceEEEEEEEECCCCcc-------ceEEEecCCCceEEecCCCCCCEEE
Confidence            455788877  8999999999998    26789999999998854210       1222233345899999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEE
Q psy6638         238 IVVRGYNSVGKGPFSEPFIAR  258 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~  258 (273)
                      |+|+|.... .|..|.++.+.
T Consensus       439 ~~v~a~~~~-~g~~s~~~~~~  458 (461)
T 3csg_A          439 ITVYAYSYY-YYYYSSPISIN  458 (461)
T ss_dssp             EEEEEECTT-SCBCSCCEEEE
T ss_pred             EEEEEEecc-CCCCCCCEEEe
Confidence            999999998 88888887654

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A

Probab=98.88  E-value=1.4e-08  Score=63.17  Aligned_cols=76  Identities=25%  Similarity=0.421  Sum_probs=60.8

Q ss_pred             cceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          60 KNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        60 ~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      ..+++...+.+++.|+|.++.   +.+.+|.|.|....+.+.  .....+++..+++.|.+|.|++.|.++|.|.+..+.
T Consensus        10 ~~l~vt~vt~~S~~lsW~~p~---~~v~~Y~I~y~~~~g~~~--~~~~~v~g~~~s~~l~~L~PgT~Y~V~v~a~~~~~~   84 (95)
T 2h41_A           10 TSESVTEITASSFVVSWVSAS---DTVSGFRVEYELSEEGDE--PQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGE   84 (95)
T ss_dssp             CTTSCCCCGGGCEEEECCCSC---TTEEEEEEEEEETTTCCC--CEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSC
T ss_pred             EEEEEEEeCCCeEEEEECCCC---CCccEEEEEEEeCCCCCc--ceEEECCCCccEEEECCCCCCCEEEEEEEEEcCCCc
Confidence            355677788999999999873   478999999999765432  124567778899999999999999999999987664


Q ss_pred             C
Q psy6638         140 S  140 (273)
Q Consensus       140 ~  140 (273)
                      +
T Consensus        85 S   85 (95)
T 2h41_A           85 Q   85 (95)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.84  E-value=1.4e-08  Score=58.21  Aligned_cols=79  Identities=15%  Similarity=0.108  Sum_probs=61.7

Q ss_pred             EEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccE
Q psy6638         176 IKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF  255 (273)
Q Consensus       176 l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~  255 (273)
                      |.|..|..    ..+..|.+.|+..+...      .++++.+.. ...+|+|.+|+||..|.+++.++-..|.++. ..+
T Consensus         2 IqWnap~~----shi~~YIL~w~pk~~~~------~wKev~IPg-h~nSYtIsGLkPGvtYegQLisV~r~g~~Ev-trf   69 (89)
T 1q38_A            2 RGSNAPQP----SHISKYILRWRPKNSVG------RWKEATIPG-HLNSYTIKGLKPGVVYEGQLISIQQYGHQEV-TRF   69 (89)
T ss_dssp             CCCCCSSC----SSCSEEEEEEEETTTTC------CCEEEEECS-SSSCCCCCCCCTTCCEEEEEEEECTTSCCCE-EEE
T ss_pred             ccccCCCc----ccceeeEEEEEecCCCC------ccEEEEcCC-ccceEEEeccCCCcEEEEEEEeeeecccCCc-eEE
Confidence            57887754    45889999999987654      455665544 3789999999999999999999998888754 468


Q ss_pred             EEEcCCCCCcc
Q psy6638         256 IARTNEGDFLF  266 (273)
Q Consensus       256 ~~~t~~~~P~~  266 (273)
                      .|.|....|..
T Consensus        70 dfTT~~~~~~~   80 (89)
T 1q38_A           70 DFTTTSTSTPG   80 (89)
T ss_dssp             EECSSSSCCCS
T ss_pred             EEEeccCCCcc
Confidence            88887766553

>3s9d_B Interferon alpha/beta receptor 2; human, type I interferons, IFNA2, ifnar2, SUB-complex of the interferon signaling complex; 2.00A {Homo sapiens} PDB: 1n6u_A 1n6v_A 2hym_A 2ksx_B 2kz1_B 2lag_B 3se4_C* 3se3_C* 3s8w_A*

Probab=98.84  E-value=3.9e-07  Score=64.75  Aligned_cols=173  Identities=13%  Similarity=-0.012  Sum_probs=95.8

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC--CCCCCCccceEEecCCccEEEecCC--CCCCeEEEEEEE
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS--EEMWPTQPLKIIVPGSQTSATLQPL--LPATQYQVRLLA  133 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~y~~~v~a  133 (273)
                      .|.++++.+ .+-.-.|.|+++.... .-..|.|+|+..  ...|.....+.  ....+.+.+.+.  .....|..||+|
T Consensus         4 ~~~Nv~~~S-~Nf~~iL~W~p~~~~~-~~v~YtVqy~~~~~~~~W~~v~~C~--nit~t~CDLt~~~~~~~~~Y~~RV~A   79 (199)
T 3s9d_B            4 ESCTFKISL-RNFRSILSWELKNHSI-VPTHYTLLYTIMSKPEDLKVVKNCA--NTTRSFCDLTDEWRSTHEAYVTVLEG   79 (199)
T ss_dssp             --CEEEEEE-ETTEEEEEEECSSCCS-SCCEEEEEEEESSSCCCCEECGGGS--SBSCSEEECTTTCCCSSSCEEEEEEE
T ss_pred             CceEEEEEE-ECCceEEEECCCCCCC-CCcEEEEEEEEecCCCcceECCcCC--ccCCCEEcCCCccccCcccEEEEEEE
Confidence            455666665 3556789999875432 335899999865  35775433332  235577888765  567789999999


Q ss_pred             eCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeE-EEEEEEcCCCCccceeeee
Q psy6638         134 ENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGY-DVGYQISSGSSLALSSYTL  212 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y-~v~~~~~~~~~~~~~~~~~  212 (273)
                      ..+...+. +....|.......-+|| .+.+..   ..+++.|.-..|..  .+....-| .+.|+.......+.....+
T Consensus        80 ~~g~~~S~-~~s~~F~p~~~T~IgPP-~v~l~~---~~~~i~V~i~~P~~--~~~~~~~y~sl~~~~~~~~~~k~~~~~~  152 (199)
T 3s9d_B           80 FSGNTTLF-SCSHNFWLAIDMSFEPP-EFEIVG---FTNHINVMVKFPSI--VEEELQFDLSLVIEEQSEGIVKKHKPEI  152 (199)
T ss_dssp             EC--CCEE-EEEEEECHHHHCEECCC-EEEEEE---CSSCEEEEEECCC------CCCCCCEEEEEEEETTEEEEECCC-
T ss_pred             ECCCCCCc-eEecceehHHhCccCCC-EEEEEe---cCCEEEEEEECCcc--cccccceeEEEEEEEEecccceEeeeee
Confidence            87544333 33333433222222344 566654   45678888888754  22222222 3455544321100000000


Q ss_pred             eeEEecCCcccEEEcCCCCccceEEEEEEEec
Q psy6638         213 KSVELDNQYEGELRIPGLTPYTKYAIVVRGYN  244 (273)
Q Consensus       213 ~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  244 (273)
                         .........+.|.+|.|++.|-++|.+..
T Consensus       153 ---~~~~~~~~~~vi~~L~P~T~YCv~V~~~~  181 (199)
T 3s9d_B          153 ---KGNMSGNFTYIIDKLIPNTNYCVSVYLEH  181 (199)
T ss_dssp             ------CCSEEEEEECSCCSSCEEEEEEEEEC
T ss_pred             ---eecccCcceEEEeccCCCCcEEEEEEEEe
Confidence               00001234789999999999999999864

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.81  E-value=7.8e-07  Score=67.55  Aligned_cols=215  Identities=14%  Similarity=0.157  Sum_probs=117.2

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcce--EEEEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI--RITEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~--~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      +....|.|.++..+|.|.|+|.+.|..|.....+.+.+..+|.....+  .........+.|.+.....   +.  ..+.
T Consensus        58 ~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~---p~--~~v~  132 (284)
T 2rik_A           58 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGS---PE--IKVL  132 (284)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESS---SC--CEEE
T ss_pred             CCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeee---CC--CEEE
Confidence            346789999999999999999999999887778888887776421111  1122234445555553211   11  1355


Q ss_pred             EEeCCCCCCCc-cceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCC
Q psy6638          93 YKSSEEMWPTQ-PLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP  171 (273)
Q Consensus        93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~  171 (273)
                      |...+...... ............+.|.++.......|++.+.|..|....+..+.+...+... ..|..+.+..    .
T Consensus       133 W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~-~~~~~~~~~~----g  207 (284)
T 2rik_A          133 WYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR-KKPHPVETLK----G  207 (284)
T ss_dssp             EEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCC-SCCCCEEECT----T
T ss_pred             EEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcce-eCCCcceecC----C
Confidence            55443221111 1122222344568888899888999999999987743322222222211111 1233333322    3


Q ss_pred             ceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638         172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       172 ~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                      ..+.|........  .     ..+.|...+..-.....+..  .  .........|.++.....-.|+..|.|..|...
T Consensus       208 ~~v~l~C~~~g~p--~-----~~v~W~~~~~~~~~~~~~~~--~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  275 (284)
T 2rik_A          208 ADVHLECELQGTP--P-----FQVSWHKDKRELRSGKKYKI--M--SENFLTSIHILNVDSADIGEYQCKASNDVGSYT  275 (284)
T ss_dssp             CCEEEEEECBSSS--C-----CEEEEEETTEEECBTTTEEE--E--EETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CeEEEEEEEEecC--C-----CEEEEEECCEECcCCCCEEE--E--EcCCEEEEEEcCCCcccCEEEEEEEEeCCCcee
Confidence            3455555543221  1     13444443321000000011  0  111124677888888888899999999988653

>2hft_A Human tissue factor; coagulation factor; 1.69A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1jps_T 1ahw_C 1boy_A 1tfh_A 1wtg_T* 1wss_T* 1wqv_T* 1wun_T* 1wv7_T* 2zp0_T* 2zwl_T* 2zzu_T* 1z6j_T* 2aei_T* 2flb_T* 2b7d_T* 2f9b_T* 1o5d_T* 2flr_T* 1w0y_T* ...

Probab=98.79  E-value=1.7e-07  Score=67.93  Aligned_cols=171  Identities=16%  Similarity=0.141  Sum_probs=102.6

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecC-C--CCCCeEEEEEEEe
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP-L--LPATQYQVRLLAE  134 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l--~~~~~y~~~v~a~  134 (273)
                      +|.++++.+. +....|.|+++..    ...|.|+|+..+..|..    .+.....+.+.+.+ +  .....|.+||+|.
T Consensus         8 ~P~NV~~~S~-Nf~~iL~W~p~~~----n~~YtVqy~~~~~~W~~----~C~~it~t~CDlT~~~~~d~~~~y~~RVrA~   78 (218)
T 2hft_A            8 AAYNLTWKST-NFKTILEWEPKPV----NQVYTVQISTKSGDWKS----KCFYTTDTECDLTDEIVKDVKQTYLARVFSY   78 (218)
T ss_dssp             CCEEEEEEEE-TTEEEEEEECCCS----SEEEEEEEEETTSCCEE----EEEEESCSEEECHHHHGGGTTSCEEEEEEEE
T ss_pred             CCceeEEEEE-cCeEEEEEcCCCC----CeEEEEEEEEcCcchHh----hCcCCCCCEEcCCcccccCCCceEEEEEEEE
Confidence            6778877764 6677899998753    36899999998778884    33334566777765 3  6777899999998


Q ss_pred             CCC---CCCC-----CCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCC----Cc-------cceeeeEEE
Q psy6638         135 NPL---GMSE-----TGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRE----SW-------NGVLLGYDV  195 (273)
Q Consensus       135 ~~~---g~~~-----~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~----~~-------~~~i~~y~v  195 (273)
                      ...   ..+.     |+....|.......-+||. +.+..  .....|.|.-.+|...    +.       .+....|.|
T Consensus        79 ~~~~~~~~S~~~~s~w~~s~~F~p~~~t~igPP~-v~l~~--~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~l~Y~v  155 (218)
T 2hft_A           79 PAGNVESTGSAGEPLYENSPEFTPYLETNLGQPT-IQSFE--QVGTKVNVTVEDERTLVRRNNTFLSLRDVFGKDLIYTL  155 (218)
T ss_dssp             ECSSCCCC----CCCEEECCCBCHHHHSBCCCCC-EEEEE--EETTEEEEEECCCEEEEEETTEEEEHHHHHGGGCEEEE
T ss_pred             eCCCCCccccccccCcccccceeehHhCEECCCE-EEEEE--CCCCEEEEEEECCCCccccCCcccchhHhcCCCeEEEE
Confidence            763   2232     2222333322223334553 66655  3444899888888631    00       122468999


Q ss_pred             EEEEcCCCCc-cceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecC
Q psy6638         196 GYQISSGSSL-ALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS  245 (273)
Q Consensus       196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~  245 (273)
                      .|+..++.+. +... ..+. .....  ..+.+ +|.|++.|-|+|++.-.
T Consensus       156 ~~w~~~s~~~~~~~~-~~k~-~~~~~--~~~~~-~L~p~t~YCv~v~~~~~  201 (218)
T 2hft_A          156 YYWKSSSQEKGEFRS-GKKT-AKTNT--NEFLI-DVDKGENYCFSVQAVIP  201 (218)
T ss_dssp             EEECCC----------CCEE-EEESS--SEEEE-ECCTTCCCEEEEEEECT
T ss_pred             EEEECCCCccccccc-ceEE-EecCC--ceEEe-cCCCCCCEeEEEEEEEe
Confidence            9998875411 0000 0011 11111  34444 59999999999999843

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.73  E-value=9.5e-07  Score=77.33  Aligned_cols=227  Identities=17%  Similarity=0.199  Sum_probs=126.8

Q ss_pred             eeEEEEEEecCC-cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCC
Q psy6638           4 RYTIREQVLEDG-MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSG   82 (273)
Q Consensus         4 r~~~~~~~~~~~-~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~   82 (273)
                      |+.....+..++ ..+.|.|.++..+|.|.|+|.|.|..|.......+.+..+|...............+.|.+..... 
T Consensus       475 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~-  553 (816)
T 3dmk_A          475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGY-  553 (816)
T ss_dssp             TEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECS-
T ss_pred             CcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCC-
Confidence            444443333333 456799999999999999999999999888888888887774221111223345667777754311 


Q ss_pred             CccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCC-CCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCC---C
Q psy6638          83 NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLL-PATQYQVRLLAENPLGMSETGAELQASTLEEAPNG---A  158 (273)
Q Consensus        83 ~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~---~  158 (273)
                        +.  -.+.|...+............  ....+.|.++. ......|+|.|.|..|... +..+.+.... .|..   .
T Consensus       554 --p~--~~i~W~k~~~~l~~~~~~~~~--~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~-~~~~~v~v~~-~p~~~~~~  625 (816)
T 3dmk_A          554 --PI--DSIVWERDNRALPINRKQKVF--PNGTLIIENVERNSDQATYTCVAKNQEGYSA-RGSLEVQVMV-LPRIIPFA  625 (816)
T ss_dssp             --SE--EEEEEEETTEESCCSTTEEEC--TTSEEEESSCCHHHHCEEEEEEEEESSSCEE-EEEEEEEEEC-CCCCBCCC
T ss_pred             --CC--CEEEEEECCeEcccCCceEEe--cCCeEEEEecCccccCEEEEEEEEECCCcee-eeeEEEEEec-CCcccccc
Confidence              22  245666544321111111111  23467888876 5677899999999877432 1222222211 1111   1


Q ss_pred             CeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEE
Q psy6638         159 PREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAI  238 (273)
Q Consensus       159 p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~  238 (273)
                      +....+    .....+.|.+.......      ...+.|...+..-........   .........++|.++.......|
T Consensus       626 ~~~~~~----~~G~~v~L~C~~~~~~~------~~~i~W~~~g~~l~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y  692 (816)
T 3dmk_A          626 FEEGPA----QVGQYLTLHCSVPGGDL------PLNIDWTLDGQAISEDLGITT---SRVGRRGSVLTIEAVEASHAGNF  692 (816)
T ss_dssp             CCSSCE----ESSCEEEEEEBCCCSSS------CCEEEEEETTBCCCGGGTCEE---EEETTTEEEEEEESCCGGGCEEE
T ss_pred             cccccc----CCCCeEEEEEEEeCCCC------CCEEEEEECCeEcCCCCCeeE---EEcCCCeeEEEEccCChhhCEEE
Confidence            111111    24557788887653311      124455544332111111111   11122235688899999999999


Q ss_pred             EEEEecCCCcCCCC
Q psy6638         239 VVRGYNSVGKGPFS  252 (273)
Q Consensus       239 ~v~a~n~~g~~~~s  252 (273)
                      +..|.|..|....+
T Consensus       693 ~C~a~N~~g~~~~~  706 (816)
T 3dmk_A          693 TCHARNLAGHQQFT  706 (816)
T ss_dssp             EEEEECSSCEEEEE
T ss_pred             EEEEEeCCccEEEE
Confidence            99999998876443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.71  E-value=5.6e-07  Score=75.52  Aligned_cols=215  Identities=14%  Similarity=0.168  Sum_probs=114.3

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceE--EEEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR--ITEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~--~~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      +....|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.....+.  ........+.|.+.....   +..  .+.
T Consensus       250 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~---P~p--~v~  324 (570)
T 3b43_A          250 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGS---PEI--KVL  324 (570)
T ss_dssp             TTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESS---SSC--EEE
T ss_pred             CCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeC---CCC--EEE
Confidence            3456899999999999999999999999888888888777664111100  011234455555553211   111  345


Q ss_pred             EEeCCCCCCCcc-ceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCC
Q psy6638          93 YKSSEEMWPTQP-LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDP  171 (273)
Q Consensus        93 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~  171 (273)
                      |...+....... ...........+.|.++.......|++.|.|..|....+..+.+...+.. ...|..+.+..    .
T Consensus       325 W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~-~~~~~~~~~~~----G  399 (570)
T 3b43_A          325 WYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF-RKKPHPVETLK----G  399 (570)
T ss_dssp             EEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEE-CSCCCCEEECT----T
T ss_pred             EeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCee-ecCCCceeecC----C
Confidence            555432111111 11222233456788899999999999999999885433332322211110 01233333322    2


Q ss_pred             ceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638         172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       172 ~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                      ..+.|.......+  .     ..|.|...+..-.....+..  .  .........|.++.....-.|+..|.|..|...
T Consensus       400 ~~v~l~C~~~g~P--~-----p~v~W~k~g~~l~~~~~~~~--~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  467 (570)
T 3b43_A          400 ADVHLECELQGTP--P-----FQVSWHKDKRELRSGKKYKI--M--SENFLTSIHILNVDSADIGEYQCKASNDVGSDT  467 (570)
T ss_dssp             CCEEEEEEEESSS--S-----CCCEEEETTEECCSSSSEEE--E--EETTEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CEEEEEEEEecCC--C-----CEEEEEECCEECcCCCCEEE--E--EcCCEEEEEECCCChhhCEEEEEEEEECCCeEE
Confidence            2333333322110  0     12334333211000000111  1  111124577888888888899999999988654

>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=98.71  E-value=1.1e-06  Score=54.20  Aligned_cols=89  Identities=22%  Similarity=0.306  Sum_probs=63.8

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-----CCCCccceEEecCCccEEEec---------
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-----MWPTQPLKIIVPGSQTSATLQ---------  119 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---------  119 (273)
                      +-|++|.++++.. ....+.|+|++|....+.|..|-|++.....     .|. .......-+....+++.         
T Consensus         6 gfPgAPs~ikIsK-~~dgahLsWePP~~~sG~I~EYSVYlAvrs~~~~~~~~q-L~FvrVYcG~~~~C~V~~~~L~~ahi   83 (123)
T 1wft_A            6 SGPGAPSTVRISK-NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQ-LVFMRIYCGLKTSCTVTAGQLANAHI   83 (123)
T ss_dssp             SCCCCCEEEEEEE-CSSEEEEEEECCSSCCSSCCCEEEEEEECSSCCCSCSCC-CEEEEEEEESCSEEEEEHHHHTTCCC
T ss_pred             CCCCCCcceEEee-CCCceEEeecCCCCCCcccEEEEEEEEecccccCCCcCe-eeEEEEEecCCcceEecccchhhhhh
Confidence            4578888887766 4678999999998888899999999987542     222 22222223344455554         


Q ss_pred             CCCCCCeEEEEEEEeCCCCCCCCCc
Q psy6638         120 PLLPATQYQVRLLAENPLGMSETGA  144 (273)
Q Consensus       120 ~l~~~~~y~~~v~a~~~~g~~~~s~  144 (273)
                      ++.+-..|.|||.|+|..|.|..+.
T Consensus        84 d~t~kpAiiFRIaArNeKGYGPaTq  108 (123)
T 1wft_A           84 DYTSRPAIVFRISAKNEKGYGPATQ  108 (123)
T ss_dssp             BCSSSCEEEEEEEEBSSSSBCCCEE
T ss_pred             ccCCCceEEEEEEeecCCCCCCccc
Confidence            5666678999999999999887544

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.71  E-value=3.4e-05  Score=64.86  Aligned_cols=221  Identities=15%  Similarity=0.109  Sum_probs=117.8

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCce-----eEEEEEEecCCCCCcceE-EEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAE-----MTIQLLVQETPEAPKNIR-ITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~-----~~~~~~~~~~P~~p~~~~-~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      .+.|.|.++..+|.|.|+|.|.|. |...     ..+.+.+..+|..+..+. +.......+.|.+...... .+...|.
T Consensus       289 ~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p-~p~i~~w  366 (585)
T 2ocw_A          289 SFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKE-SKSIKYW  366 (585)
T ss_pred             EEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCC-CccEEEE
Confidence            447999999999999999999995 4443     667777777665332221 2223455677777653221 1333455


Q ss_pred             EEEEe--CCC--CCC---------CccceEEe---cCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCC
Q psy6638          91 IQYKS--SEE--MWP---------TQPLKIIV---PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEA  154 (273)
Q Consensus        91 v~~~~--~~~--~~~---------~~~~~~~~---~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~  154 (273)
                      +.|..  .+.  ...         ........   ......+.|.++.......|+|.| |..|..  +..+.+......
T Consensus       367 ~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~--~~~~~l~V~~~~  443 (585)
T 2ocw_A          367 CLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLW--RTTVEIKIIEGE  443 (585)
T ss_pred             EEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCcc--ceeEEEEEecCc
Confidence            56654  322  100         00000011   011124778888888888889988 766643  333333332221


Q ss_pred             CC-CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccce----eeeeeeEEecCCcccEEEcCC
Q psy6638         155 PN-GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS----SYTLKSVELDNQYEGELRIPG  229 (273)
Q Consensus       155 p~-~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~  229 (273)
                      |. ..|..+.+    .....+.|.+......  . ..-.+.|.|...+..-....    ...+... .........+|.+
T Consensus       444 p~~~~~~~~~v----~~G~~v~L~C~~~~~~--~-~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~  515 (585)
T 2ocw_A          444 PNLKVPGNVTA----VLGETLKVPCHFPCKF--S-SYEKYWCKWNNTGCQALPSQDEGPSKAFVNC-DENSRLVSLTLNL  515 (585)
T ss_pred             cccccCCceeE----ecCCcEEEEEEecCCC--C-CCccEEEEEeecCceeeeccCCCCCcceEEe-cCcccEEEEEECC
Confidence            11 12333443    2345677777664221  0 11245666665543210000    0000010 0112235788899


Q ss_pred             CCccceEEEEEEEecCCCcCC
Q psy6638         230 LTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       230 L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                      +.....-.|+..|.|..|.+.
T Consensus       516 v~~~d~G~Y~C~a~N~~G~~~  536 (585)
T 2ocw_A          516 VTRADEGWYWCGVKQGHFYGE  536 (585)
T ss_pred             CCcccCeEEEEEeEeCCCccE
Confidence            988888889999999988764

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.65  E-value=7.1e-07  Score=74.92  Aligned_cols=119  Identities=19%  Similarity=0.247  Sum_probs=77.8

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      +....|.|.++..+|.|.|+|.|.|..|.......+.+..+|.   .|..+.  ......+.|.+.....+  +.   .+
T Consensus       344 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~--~~~G~~v~l~C~~~g~P--~p---~v  416 (570)
T 3b43_A          344 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVE--TLKGADVHLECELQGTP--PF---QV  416 (570)
T ss_dssp             TTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEE--ECTTCCEEEEEEEESSS--SC---CC
T ss_pred             CCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCcee--ecCCCEEEEEEEEecCC--CC---EE
Confidence            4456899999999999999999999999998888888888774   343332  23345566665532111  11   24


Q ss_pred             EEEeCCCCCCCc-cceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          92 QYKSSEEMWPTQ-PLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        92 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      .|...+...... ............+.|.++.......|.+.|.|..|..
T Consensus       417 ~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  466 (570)
T 3b43_A          417 SWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSD  466 (570)
T ss_dssp             EEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             EEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeE
Confidence            454443211111 1122222333567888999999999999999998854

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.65  E-value=1.6e-06  Score=65.98  Aligned_cols=223  Identities=12%  Similarity=0.083  Sum_probs=117.2

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCce-eEEEEEEecCCCCCcceE-EEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPEAPKNIR-ITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~-~~~~~~~~~~P~~p~~~~-~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      .++..+.|.|.++..+|.|.|+|.+.|..|... ..+.+.+..+|....... ........+.|.+.....   +..  .
T Consensus        55 ~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~---p~~--~  129 (291)
T 2wim_A           55 KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSS---PAP--A  129 (291)
T ss_dssp             EETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCS---SCC--E
T ss_pred             cCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccC---CCC--E
Confidence            355677999999999999999999999988764 366666666654222111 122345566666654311   111  2


Q ss_pred             EEEEeCCCCCCC-ccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCC--CCCeeEEecCC
Q psy6638          91 IQYKSSEEMWPT-QPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN--GAPREVTSDPG  167 (273)
Q Consensus        91 v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~--~~p~~~~~~~~  167 (273)
                      +.|...+..... ....... .....+.|.++.......|++.+.+..+.......+.+.... .|.  .++....... 
T Consensus       130 v~W~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~-~p~~~~~~~~~~~~~-  206 (291)
T 2wim_A          130 VSWLYHNEEVTTISDNRFAM-LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV-PPAISMPQKSFNATA-  206 (291)
T ss_dssp             EEEECC----CBCCCSSEEE-CTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB-CCCCBCSCSEEECCS-
T ss_pred             EEEEECCccccccCCceEEE-ccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc-CCccccCccccccee-
Confidence            455443322110 0011111 123468888888888889999998876432212222222211 111  1111111222 


Q ss_pred             ccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCC
Q psy6638         168 VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVG  247 (273)
Q Consensus       168 ~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g  247 (273)
                       .....+.|........  .     -.+.|...+..-.....     ... ......+.|.++.....-.|+..|.|..|
T Consensus       207 -~~g~~~~l~C~~~g~p--~-----p~v~W~~~g~~~~~~~~-----~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G  272 (291)
T 2wim_A          207 -ERGEEMTFSCRASGSP--E-----PAISWFRNGKLIEENEK-----YIL-KGSNTELTVRNIINSDGGPYVCRATNKAG  272 (291)
T ss_dssp             -SSCCEEEEECBCCCBS--C-----CEEEEEETTEECCCTTT-----EEE-CSTTCEEEEESCCSTTCEEEEEEEEETTE
T ss_pred             -cCCCeEEEEEEeecCC--C-----CeEEEEECCEECcCCcc-----EEE-cCCccEEEEeeCCcccCEEEEEEEEECCC
Confidence             3445677776654321  1     12445444321100000     011 11235678888888888889999999998


Q ss_pred             cCCCCccEEE
Q psy6638         248 KGPFSEPFIA  257 (273)
Q Consensus       248 ~~~~s~~~~~  257 (273)
                      ....+..+.+
T Consensus       273 ~~~~~~~l~v  282 (291)
T 2wim_A          273 EDEKQAFLQV  282 (291)
T ss_dssp             EEEEEEEEEC
T ss_pred             ceeeeEEEEE
Confidence            7654433333

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.63  E-value=1.2e-05  Score=68.45  Aligned_cols=208  Identities=13%  Similarity=0.079  Sum_probs=119.0

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeE--EEEEEecCCCCCcce---EEEEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMT--IQLLVQETPEAPKNI---RITEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~--~~~~~~~~P~~p~~~---~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      ..|.|.++..+|.|.|+|.|.|..|....+  +.+.+...+.+|.-.   .........+.|.+....    +.  ..+.
T Consensus       426 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~----~~--~~i~  499 (642)
T 1e07_A          426 QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA----QN--TTYL  499 (642)
T ss_pred             ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCC----CC--cEEE
Confidence            479999999999999999999999876654  445555444333211   112224567888887651    11  2344


Q ss_pred             EEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCC-CcceEEEecCCCCCCCCeeEEecCCccCC
Q psy6638          93 YKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSET-GAELQASTLEEAPNGAPREVTSDPGVVDP  171 (273)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~-s~~~~~~~~~~~p~~~p~~~~~~~~~~~~  171 (273)
                      |...+...... ...........+.|.++.......|+|.|.|..|.... ...+.+...+..+...|.+..+.    ..
T Consensus       500 W~~~g~~l~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~----~g  574 (642)
T 1e07_A          500 WWVNGQSLPVS-PRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYL----SG  574 (642)
T ss_pred             EEECCEeCCCC-CcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEE----cC
Confidence            54443221111 11222223457888889888889999999998875322 22233332222122223333332    23


Q ss_pred             ceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCC
Q psy6638         172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPF  251 (273)
Q Consensus       172 ~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~  251 (273)
                      ..+.|........  .     -.+.|...+..        ..       ......|.++.+...-.|++.|.|..|....
T Consensus       575 ~~~~l~C~~~g~p--~-----p~v~W~~~g~~--------i~-------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  632 (642)
T 1e07_A          575 ANLNLSCHSASNP--S-----PQYSWRINGIP--------QQ-------HTQVLFIAKITPNNNGTYACFVSNLATGRNN  632 (642)
T ss_pred             CcEEEEEEeccCC--C-----CeEEEEECCEE--------Cc-------cCceEEECcccccCCeEEEEEEEecccCcce
Confidence            4555555543221  0     14555544321        00       1246778888888888999999999998765


Q ss_pred             CccEEEE
Q psy6638         252 SEPFIAR  258 (273)
Q Consensus       252 s~~~~~~  258 (273)
                      +..+.+.
T Consensus       633 s~~l~V~  639 (642)
T 1e07_A          633 SIVKSIT  639 (642)
T ss_pred             eEEEEEE
Confidence            5545443

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.62  E-value=1.8e-05  Score=67.34  Aligned_cols=200  Identities=15%  Similarity=0.098  Sum_probs=116.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEecCCCCCcce--EEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETPEAPKNI--RITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~~P~~p~~~--~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      ..|.|.++..+|.|.|+|.|.|..|.... .+.+.+..+|..+...  .........+.|.+.....+  +.   .+.|.
T Consensus       342 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~---~i~W~  416 (642)
T 1e07_A          342 RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNP--PA---QYSWL  416 (642)
T ss_pred             CEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccC--CC---eEEEE
Confidence            47999999999999999999999987544 5677777666533210  11223455677777653211  11   35555


Q ss_pred             eCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecC--CccCCc
Q psy6638          95 SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP--GVVDPT  172 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~--~~~~~~  172 (273)
                      ..+...          .....+.|.++.......|+|.|.|..|....+..+.+..... + .+|. +....  ......
T Consensus       417 ~~g~~~----------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~-~-~~p~-i~~~~~~~v~~g~  483 (642)
T 1e07_A          417 IDGNIQ----------QHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAE-L-PKPS-ISSNNSKPVEDKD  483 (642)
T ss_pred             ECCEEc----------CCCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEecc-C-CCce-EecCCceeecCCC
Confidence            443211          1234678888888999999999999988665554444443321 1 1221 11110  002345


Q ss_pred             eEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcC
Q psy6638         173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG  249 (273)
Q Consensus       173 ~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~  249 (273)
                      .+.|.+.....        ...+.|...+..-....     ..... .....++|.++.......|++.|.|..|..
T Consensus       484 ~v~l~C~~~~~--------~~~i~W~~~g~~l~~~~-----~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  546 (642)
T 1e07_A          484 AVAFTCEPEAQ--------NTTYLWWVNGQSLPVSP-----RLQLS-NGNRTLTLFNVTRNDARAYVCGIQNSVSAN  546 (642)
T ss_pred             eEEEEEECCCC--------CcEEEEEECCEeCCCCC-----cEEEc-CCCcEEEEeecChhcCceEEEEeEcCCCCc
Confidence            67777776521        12444444432111000     01111 112467888888888888999999988864

>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*

Probab=98.58  E-value=6.6e-07  Score=73.07  Aligned_cols=88  Identities=24%  Similarity=0.409  Sum_probs=70.0

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ..|.++++...+..+++|+|.+|  .++.+..|+|.|.+....-  ......+....++.+|.+|+|++.|.|+|+|+..
T Consensus       371 ~~~~~l~~~~~~~~s~~l~W~~p--~~~~~~~y~v~y~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~  446 (461)
T 3csg_A          371 SVPTNLEVVAATPTSLLISWDAS--YSSSVSYYRITYGETGGNS--PVQEFTVPGSKSTATISGLSPGVDYTITVYAYSY  446 (461)
T ss_dssp             CSSCCCEEEEECSSCEEEECCCT--TGGGCSEEEEEEEETTCCS--CCEEEEEETTCCEEEECSCCTTCEEEEEEEEECT
T ss_pred             CCCcceEEeccCCCeEEEEecCC--CCCcceEEEEEEEECCCCc--cceEEEecCCCceEEecCCCCCCEEEEEEEEEec
Confidence            46778899999999999999988  4557889999998875321  1234456666789999999999999999999998


Q ss_pred             CCCCCCCcceEEE
Q psy6638         137 LGMSETGAELQAS  149 (273)
Q Consensus       137 ~g~~~~s~~~~~~  149 (273)
                      . .|..|..+.+.
T Consensus       447 ~-~g~~s~~~~~~  458 (461)
T 3csg_A          447 Y-YYYYSSPISIN  458 (461)
T ss_dssp             T-SCBCSCCEEEE
T ss_pred             c-CCCCCCCEEEe
Confidence            8 77777766543

>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.51  E-value=1.3e-06  Score=52.00  Aligned_cols=75  Identities=27%  Similarity=0.561  Sum_probs=61.2

Q ss_pred             ccEEEEEEeCCCCCCccceEEEEEEEeCC--CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcce
Q psy6638          69 SRSLQISWTAPYSGNTAITQYIIQYKSSE--EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAEL  146 (273)
Q Consensus        69 ~~~~~l~W~~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~  146 (273)
                      .++-.++|..+.  ..++..|.+.|+...  +.|.    ....++...+++|.+|+|+..|...|.+++..|+++.+ ..
T Consensus        20 pdsh~iqW~~~s--~s~I~eyiL~~R~k~~~g~Wk----e~~Ip~h~nSYtI~GL~P~~~YE~qv~S~~ryG~~Evs-~f   92 (98)
T 1oww_A           20 PNSHPIQWNAPQ--PSHISKYILRWRPKNSVGRWK----EATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVT-RF   92 (98)
T ss_dssp             TTCEEEEEECCS--SSCEEEEEEEEEETTCSSCCE----EEEECSSCCEEEECSCCSSEEEEEEEEEEESSSCEEEE-EE
T ss_pred             CCccceEEecCC--CCCceEEEEEEEEcCCCCcee----EEEecCccceEEEecCCCCcEEEEEEEEeeccCcccce-EE
Confidence            567789999874  347899999999864  4676    46677888999999999999999999999999987765 34


Q ss_pred             EEEe
Q psy6638         147 QAST  150 (273)
Q Consensus       147 ~~~~  150 (273)
                      .|.|
T Consensus        93 ~FtT   96 (98)
T 1oww_A           93 DFTT   96 (98)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4544

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=98.50  E-value=1.3e-05  Score=58.50  Aligned_cols=129  Identities=14%  Similarity=0.086  Sum_probs=86.1

Q ss_pred             EEEEEeeee--eCCCEEEEEEEEcCCCCceeEEEEEE----ecCCCCCcceEEEEeeccEEEEEEeCCCCC----Cc---
Q psy6638          18 SELGIANVL--RQDSGTLSCLATNYHGTAEMTIQLLV----QETPEAPKNIRITEESSRSLQISWTAPYSG----NT---   84 (273)
Q Consensus        18 ~~l~i~~~~--~~~~~~y~~~a~n~~g~~~~~~~~~~----~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~----~~---   84 (273)
                      +...|+++.  ....|..+++|..+.+.+........    ....+||. +.+. .....+.+.|.+|...    ++   
T Consensus        65 ~~Cdlt~~~~~~~~~Y~~RV~A~~g~~~S~w~~~~~F~p~~~t~igPP~-v~v~-~~~~~l~V~~~~P~~~~~~~~~~~~  142 (221)
T 4doh_R           65 TYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPE-VALT-TDEKSISVVLTAPEKWKRNPEDLPV  142 (221)
T ss_dssp             SEEECTTTTCCSSCCEEEEEEEESSSCBCCCEECCCBCHHHHCBCCCCE-EEEE-CCSSCEEEEEECCBCCCSSTTSCCC
T ss_pred             CEEeCCCccccCCCCEEEEEEEEcCCcccCCEecCceechhhCccCCCE-EEEE-ECCCEEEEEEeCCCcccccCCCCce
Confidence            355666654  34568888888876655433221111    35566775 6666 4678999999987531    11   


Q ss_pred             ------cceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC--CCCCCCCcceEEEecCC
Q psy6638          85 ------AITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP--LGMSETGAELQASTLEE  153 (273)
Q Consensus        85 ------~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~--~g~~~~s~~~~~~~~~~  153 (273)
                            ....|.|.+...+....   ....  .....+.|.+|+|++.|.|+|+|...  .|.|.+|....+.|..+
T Consensus       143 s~~~i~~~l~Y~V~y~~~~~~~~---~~~~--~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~~d  214 (221)
T 4doh_R          143 SMQQIYSNLKYNVSVLNTKSNRT---WSQC--VTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKD  214 (221)
T ss_dssp             BHHHHSTTCEEEEEEEETTTTEE---EEEE--ECSSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEEEECCCC
T ss_pred             EHHHhcCceEEEEEEEECCCCcE---EEEe--ecCcEEEEecCCCCCcEEEEEEEEEcCCCCCCCCCCCEeEecCCC
Confidence                  13589999988754311   1111  23467889999999999999999864  57888888888887554

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.48  E-value=1.3e-07  Score=68.24  Aligned_cols=123  Identities=12%  Similarity=-0.007  Sum_probs=68.7

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEE-eeccEEEEEEeCCCCCCccceEEEE
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITE-ESSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~-~~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      ..+....|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.......... .....+.|.+...  +. |..  .|
T Consensus        64 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~--G~-P~P--~v  138 (203)
T 4fa8_A           64 RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVN--AF-PHP--HV  138 (203)
T ss_dssp             EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEE--EE-SCC--EE
T ss_pred             EcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcC--CC-CCC--EE
Confidence            355678899999999999999999999998888888888766553211111111 1233455555431  10 111  24


Q ss_pred             EEEeCCCCC----CCccc-eEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          92 QYKSSEEMW----PTQPL-KIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        92 ~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      .|...++.-    ..... ....++......+.++.+.....|.|.|.|..|..
T Consensus       139 ~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a  192 (203)
T 4fa8_A          139 QWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA  192 (203)
T ss_dssp             EECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEE
T ss_pred             EEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence            443222100    00000 11111222233445677777788999999998843

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.43  E-value=0.00019  Score=60.26  Aligned_cols=113  Identities=16%  Similarity=0.117  Sum_probs=67.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE-e
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK-S   95 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~-~   95 (273)
                      ...|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|  |..+.  ......+.|.+.... ...+  ...+.|. .
T Consensus       184 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~--p~~~~--~~~G~~v~l~C~~~~-~~~~--~~~~~w~~~  256 (585)
T 2ocw_A          184 LFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE--PELVY--EDLRGSVTFHCALGP-EVAN--VAKFLCRQS  256 (585)
T ss_pred             EEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC--CceeE--EcCCCcEEEEEEcCC-CCCC--ceEEEEEeC
Confidence            3489999999999999999999999988778888776543  33322  223455666665321 1111  1233443 2


Q ss_pred             CCCC----------C-CCccceEEec----CCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          96 SEEM----------W-PTQPLKIIVP----GSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        96 ~~~~----------~-~~~~~~~~~~----~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      .+..          . ..........    .....+.|.++.......|+|.|.|.
T Consensus       257 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~  312 (585)
T 2ocw_A          257 SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD  312 (585)
T ss_pred             CCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC
Confidence            2100          0 0000011111    11126788888888888999999985

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} PDB: 3va2_C

Probab=98.42  E-value=8.8e-05  Score=57.14  Aligned_cols=172  Identities=12%  Similarity=0.100  Sum_probs=102.2

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCc--cceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNT--AITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~--~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      ...||.++.+...+...+.|+|+++.....  --..|.+.++..+ ..|....        ........|..+  |.++|
T Consensus        11 ~~~pP~nl~i~~~~~~~~~l~W~~~p~~~~~~~~l~Y~v~~~~~~~~~w~~~~--------t~~~~~~~L~~~--~~~rV   80 (317)
T 3qt2_A           11 SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRI--------TESKAVTILHMG--FSASV   80 (317)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECCTTSSCSSSCCEEEEEEEESSCEEEEESS--------SEEEEECCCTTC--EEEEE
T ss_pred             ccCCCcceEEEECCCceEEEEECCCCccccCcCcEEEEEEECCCCCcccEeec--------cccccccccCCC--eEEEE
Confidence            457999999998888999999998543222  2358999988764 3454211        122234456554  88888


Q ss_pred             EEeCCCCC-CCCCcceEEEe--cCCCCCCCCeeEEecCCccC-----------CceEEEEEeCCCCCCccceeeeEEEEE
Q psy6638         132 LAENPLGM-SETGAELQAST--LEEAPNGAPREVTSDPGVVD-----------PTELLIKWKAPPRESWNGVLLGYDVGY  197 (273)
Q Consensus       132 ~a~~~~g~-~~~s~~~~~~~--~~~~p~~~p~~~~~~~~~~~-----------~~~i~l~W~~~~~~~~~~~i~~y~v~~  197 (273)
                      ++....|. ..+|.++....  .+..|+..|.++.+..  .+           ...+++.|.+..+.   .....|.+.|
T Consensus        81 rt~~~~~~s~~~S~w~~~~~~~~~G~p~~~p~nlsC~~--~~~~~~~~~~~~~~~~l~CtW~pG~~~---~~~t~Y~L~y  155 (317)
T 3qt2_A           81 RTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTT--NTTEDNYSRLRSYQVSLHCTWMVGTDA---PEDTQYFLYY  155 (317)
T ss_dssp             EEEEECSSCEEECCCEEEEECCCSCBGGGSCEEEEEEE--EEEECSCSSSCCEEEEEEEEEECCTTC---CTTCEEEEEE
T ss_pred             EEEECCCCCccccccccccccCCCCCCCCcceeeEEEE--ccccccccccccccceEEEEeeCCCCC---CCCeeEEEEE
Confidence            88755442 22444444333  2234556788888755  34           36899999997652   2235799999


Q ss_pred             EEcCCCCccceeeeeeeEEecCC-cccEEEcCCCC----ccceEEEEEEEecCCC
Q psy6638         198 QISSGSSLALSSYTLKSVELDNQ-YEGELRIPGLT----PYTKYAIVVRGYNSVG  247 (273)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~L~----p~~~Y~~~v~a~n~~g  247 (273)
                      +..+. ..+.     ........ ....+.+....    ....|.|.|.+.+..+
T Consensus       156 ~~~~~-~~eC-----~~y~~~~~~~~~~C~f~~~~~~~~~~~~~~i~V~gss~~~  204 (317)
T 3qt2_A          156 RYGSW-TEEC-----QEYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHS  204 (317)
T ss_dssp             EETTE-EEEC-----CCEEECTTSCEEEEEESSCSCCTTCCSEEEEEEEEECTTS
T ss_pred             EeCCC-CeeC-----CccccCCCcceeEEEeCCccccccCcEEEEEEEEcCCCCc
Confidence            87641 1111     00111111 12456666542    2467888888765433

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.40  E-value=4.7e-07  Score=58.00  Aligned_cols=44  Identities=32%  Similarity=0.419  Sum_probs=38.1

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      .++...+|.|.++.++|.|.|+|.|.|..|.....+.+.|..+|
T Consensus        64 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           64 ADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             ecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEcCC
Confidence            45677899999999999999999999999999888888888765

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=98.38  E-value=7.4e-06  Score=59.09  Aligned_cols=125  Identities=15%  Similarity=0.083  Sum_probs=81.3

Q ss_pred             EEEEee-eeeCCCEEEEEEEEcCCCCceeEEE--EEE--ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          19 ELGIAN-VLRQDSGTLSCLATNYHGTAEMTIQ--LLV--QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        19 ~l~i~~-~~~~~~~~y~~~a~n~~g~~~~~~~--~~~--~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      ...|.+ +.....|.++++|.+..+.+.....  +..  ...+.||. +.+. .....+.+.|.++    +.+..|.|.|
T Consensus        68 ~Cdlt~~~~~~~~Y~~RVrA~~~~~~S~w~~~~~f~~~~~t~i~PP~-v~v~-~~~~~i~V~~~~p----~~~l~Y~v~y  141 (206)
T 4doh_B           68 ECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPG-MEIT-KDGFHLVIELEDL----GPQFEFLVAY  141 (206)
T ss_dssp             EEECTTTCCSSSCEEEEEEEEETTEECCCEECSSCBCGGGCBCCCCC-EEEE-EETTEEEEEECCC----CTTCEEEEEE
T ss_pred             EEcCCccccCCCCEEEEEEEEcCCCccCccccccccchhhcccCCCe-EEEE-eCCCEEEEEecCC----CCcEEEEEEE
Confidence            444553 5456678889999886554433221  111  23445555 5555 4788999999976    3567999999


Q ss_pred             EeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC--CCCCCCCcceEEEec
Q psy6638          94 KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP--LGMSETGAELQASTL  151 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~--~g~~~~s~~~~~~~~  151 (273)
                      ...+..-.  ............+.|.+|.|++.|.|+|+|...  .+.|.+|....+.+.
T Consensus       142 ~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Ycv~Vra~~~~~~~~g~~S~~~C~~t~  199 (206)
T 4doh_B          142 WRREPGAE--EHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQ  199 (206)
T ss_dssp             EESSSSCC--CEEEEECCSSSEEEEEECCSSSCEEEEEEEEEGGGTEECCCCCCEEECC-
T ss_pred             EEcCCCce--eEEeEEccCCeEEEEeCCCCCCcEEEEEEEEecCCCCCCCCCCCEeEEcc
Confidence            87654321  111122234567899999999999999999864  367778887777764

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.37  E-value=1.4e-06  Score=56.48  Aligned_cols=49  Identities=22%  Similarity=0.346  Sum_probs=43.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcce
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI   62 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~   62 (273)
                      .+....|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.+|...
T Consensus        59 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~P~~p  107 (114)
T 2cqv_A           59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT  107 (114)
T ss_dssp             CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSCCCCC
T ss_pred             cCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCCCCCCCC
Confidence            4456789999999999999999999999988889999999888877653

>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.35  E-value=8.1e-07  Score=55.74  Aligned_cols=102  Identities=23%  Similarity=0.355  Sum_probs=72.0

Q ss_pred             CcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCC---ccc-eeeeEEEEEEEcCCCCccceeeeeeeEEec
Q psy6638         143 GAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRES---WNG-VLLGYDVGYQISSGSSLALSSYTLKSVELD  218 (273)
Q Consensus       143 s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~---~~~-~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~  218 (273)
                      +..+.|+|....|+.+|.++.++.+ ..+..+.|+|+|+....   .|| .+.+|.|+....          ++.++...
T Consensus         5 ~a~veF~Tl~aGpPdpP~dVqVe~G-p~pgtLlVsW~Pvt~~~~g~Snga~VtGY~VYadGq----------kV~eV~~P   73 (130)
T 2csp_A            5 SSGVEFSTLPAGPPAPPQDVTVQAG-VTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQ----------RVAEVIFP   73 (130)
T ss_dssp             CCCSCCCCCCCCCCCCCEEEEECCC-SSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSSS----------EEEEECCT
T ss_pred             ceEEEEecCCCCCCCCCceeEEEeC-CCCcEEEEEeECCcccCCCCCCCcceEEEEEEeCCc----------EEEEecCC
Confidence            4557888888889999999999873 57889999999986321   134 789999985322          23344333


Q ss_pred             CCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccE
Q psy6638         219 NQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF  255 (273)
Q Consensus       219 ~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~  255 (273)
                      -.....+.+..|+--..+.+.|+.....|+|.-|...
T Consensus        74 Tad~~lv~l~~L~~l~~~~VtVRT~S~~GeS~DS~~a  110 (130)
T 2csp_A           74 TADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVA  110 (130)
T ss_dssp             TCSEEEEESHHHHHHTCSCBEEEEEESSCCCCCCSCB
T ss_pred             CCCcEEEEHHHhcCCCCcEEEEEeccCCccccCCccc
Confidence            3434455565666555788999999999988766544

>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.33  E-value=3e-06  Score=48.70  Aligned_cols=73  Identities=23%  Similarity=0.457  Sum_probs=55.3

Q ss_pred             EEEeCCCCCCccceEEEEEEEeCCC--CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEec
Q psy6638          74 ISWTAPYSGNTAITQYIIQYKSSEE--MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL  151 (273)
Q Consensus        74 l~W~~~~~~~~~~~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~  151 (273)
                      ++|++|.  ...+..|.+.|++.+.  .|+    ...+++...++.|.+|+||..|..++.++-..|.+. ...+.++|.
T Consensus         2 IqWnap~--~shi~~YIL~w~pk~~~~~wK----ev~IPgh~nSYtIsGLkPGvtYegQLisV~r~g~~E-vtrfdfTT~   74 (89)
T 1q38_A            2 RGSNAPQ--PSHISKYILRWRPKNSVGRWK----EATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQE-VTRFDFTTT   74 (89)
T ss_dssp             CCCCCSS--CSSCSEEEEEEEETTTTCCCE----EEEECSSSSCCCCCCCCTTCCEEEEEEEECTTSCCC-EEEEEECSS
T ss_pred             ccccCCC--cccceeeEEEEEecCCCCccE----EEEcCCccceEEEeccCCCcEEEEEEEeeeecccCC-ceEEEEEec
Confidence            5788764  3368899999998753  565    567888889999999999999999999998777544 233555554


Q ss_pred             CC
Q psy6638         152 EE  153 (273)
Q Consensus       152 ~~  153 (273)
                      ..
T Consensus        75 ~~   76 (89)
T 1q38_A           75 ST   76 (89)
T ss_dssp             SS
T ss_pred             cC
Confidence            43

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.30  E-value=2.2e-05  Score=59.69  Aligned_cols=215  Identities=14%  Similarity=0.066  Sum_probs=109.4

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCc-eeEEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~-~~~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      +....|.|.++..+|.|.|+|.+.|..|.. ...+.+.+..+|.   .|....+  .....+.|.+.....  ...   .
T Consensus        59 ~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~--~~g~~v~l~C~~~~~--p~~---~  131 (291)
T 1qz1_A           59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEF--KEGEDAVIVCDVVSS--LPP---T  131 (291)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEE--ETTSCEEECCEEECS--SCC---E
T ss_pred             CCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccc--cCCCeEEEEEEeccC--CCC---E
Confidence            456789999999999999999999988654 3466666665553   3333222  234455665553211  111   3


Q ss_pred             EEEEeCCCCCCC-ccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEec--CCCC-CCCCeeEEecC
Q psy6638          91 IQYKSSEEMWPT-QPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL--EEAP-NGAPREVTSDP  166 (273)
Q Consensus        91 v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~--~~~p-~~~p~~~~~~~  166 (273)
                      +.|...+..... ....... .....+.|.++.......|++.+.|..+....+..+.+...  +... ...+....+  
T Consensus       132 v~W~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~--  208 (291)
T 1qz1_A          132 IIWKHKGRDVILKKDVRFIV-LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATA--  208 (291)
T ss_dssp             EEEEETTSCSSTTCCTTEEE-CTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEET--
T ss_pred             EEEEECCEEcccCCCceEEE-ccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCccccccccccccc--
Confidence            556554432110 0111111 12346888889888888999999876432211121222111  1000 001112222  


Q ss_pred             CccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCC
Q psy6638         167 GVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSV  246 (273)
Q Consensus       167 ~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~  246 (273)
                        .....+.|........  .     -.+.|...+..-....... ..... ........|.++.....-.|+..|.|..
T Consensus       209 --~~g~~v~l~C~~~g~p--~-----p~i~W~~~g~~~~~~~~~~-~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  277 (291)
T 1qz1_A          209 --NLGQSVTLVCDADGFP--E-----PTMSWTKDGEPIENEEEDD-EKHIF-SDDSSELTIRNVDKNDEAEYVCIAENKA  277 (291)
T ss_dssp             --TSCCCEEEEEEEEEES--C-----CEEEEEETTEECCCC--CC-SSEEE-CTTSCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             --ccCceEEEEEEEEEeC--C-----CcEEEEECCEECcCCCCCC-cceEE-cCCCcEEEEEecChhcCEEEEEEEEeCC
Confidence              2233455544432110  0     1244444332110000000 00111 1123568888998888889999999998


Q ss_pred             CcCC
Q psy6638         247 GKGP  250 (273)
Q Consensus       247 g~~~  250 (273)
                      |...
T Consensus       278 G~~~  281 (291)
T 1qz1_A          278 GEQD  281 (291)
T ss_dssp             EEEE
T ss_pred             CceE
Confidence            8643

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.28  E-value=2.9e-06  Score=64.63  Aligned_cols=224  Identities=13%  Similarity=0.030  Sum_probs=110.3

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc--ceEEEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK--NIRITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~--~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      .++....|.|.++...|.|.|+|.+.|..|.....+.+.+..+|.+..  ...........+.|.+.... .. .  .-.
T Consensus        46 ~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~--~~~  121 (292)
T 4dkd_C           46 SDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PV-L--EAG  121 (292)
T ss_dssp             CBTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GG-G--GSS
T ss_pred             ccCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CC-c--cee
Confidence            455677999999999999999999999888887788888877665311  11122334556777666432 11 1  012


Q ss_pred             EEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCC---
Q psy6638          91 IQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPG---  167 (273)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~---  167 (273)
                      +.|...++............ ....+.|.++.......|++.+.|..|.. .+..+.+......+ .+|. +.....   
T Consensus       122 v~W~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~~~-~~p~-i~~~~~~~~  197 (292)
T 4dkd_C          122 VSLVRVRGRPLMRHTNYSFS-PWHGFTIHRAKFIQSQDYQCSALMGGRKV-MSISIRLKVQKVIP-GPPA-LTLVPAELV  197 (292)
T ss_dssp             EEEEEGGGCCCCSSCCEECC-SSSCCEETTCCGGGCSEEEEEECSTTSCE-ECCCEEEEEECCCC-SSCE-EEEESSCBC
T ss_pred             EEEEecCCCccccCCccccc-CCceEEECCCCHHHCeEEEEEEEeCCCce-eEEEEEEEEeCCCC-CCCe-EEccCCcee
Confidence            44433321111011111121 22337888888888888999998775532 22233333332211 1232 222110   


Q ss_pred             ccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCC
Q psy6638         168 VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVG  247 (273)
Q Consensus       168 ~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g  247 (273)
                      ......+.|........      ..+.+.|...+..............  .........|.++.....-.|+..|.|..|
T Consensus       198 ~~~g~~v~l~C~~~~~~------~~~~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  269 (292)
T 4dkd_C          198 RIRGEAAQIVCSASSVD------VNFDVFLQHNNTKLAIPQQSDFHNN--RYQKVLTLNLDQVDFQHAGNYSCVASNVQG  269 (292)
T ss_dssp             CCSSSCEEEEEEEEESS------SCCEEECCBSSCCCCCCBEEEEETT--EEEEEEEEEESSCCTTSCEEEEEEEECSSC
T ss_pred             EecCCCEEEEEEecCCC------CceEEEEeCCCcccccCccceeccc--eeeeEEEEEECccChhcCeEEEEEEecCCC
Confidence            01223344433322110      0123333333221100000000000  000123678888888888888999999888


Q ss_pred             cCCCC
Q psy6638         248 KGPFS  252 (273)
Q Consensus       248 ~~~~s  252 (273)
                      ....+
T Consensus       270 ~~~~~  274 (292)
T 4dkd_C          270 KHSTS  274 (292)
T ss_dssp             EEEEE
T ss_pred             CceeE
Confidence            65433

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.28  E-value=4e-05  Score=55.16  Aligned_cols=128  Identities=15%  Similarity=0.215  Sum_probs=79.0

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCC--ceeEEEEEEecCCCCCcceE-EEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGT--AEMTIQLLVQETPEAPKNIR-ITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~--~~~~~~~~~~~~P~~p~~~~-~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      ..|.|.++...|.|.|+|.+.|..|.  ....+.+.+..+|..+.... ........+.|.+.... +. +..  .+.|.
T Consensus        65 ~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~-p~~--~i~W~  140 (212)
T 1f97_A           65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHD-GS-PPS--EYSWF  140 (212)
T ss_dssp             TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSC-CB-SCC--EEEEE
T ss_pred             eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEccc-Cc-CCC--EEEEE
Confidence            47999999999999999999998773  34467777877776554221 12234556777777321 11 111  34555


Q ss_pred             eCCC-CCCCcc--------ceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEE
Q psy6638          95 SSEE-MWPTQP--------LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAS  149 (273)
Q Consensus        95 ~~~~-~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~  149 (273)
                      ..+. ......        ...........+.|.++.......|+|.|.|..|....+..+.+.
T Consensus       141 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~  204 (212)
T 1f97_A          141 KDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD  204 (212)
T ss_dssp             ETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEE
T ss_pred             eCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEE
Confidence            4433 211100        112222345678889999999999999999998865334444443

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.27  E-value=2.6e-05  Score=59.13  Aligned_cols=221  Identities=11%  Similarity=0.038  Sum_probs=108.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc--ceEEEEeeccEEEEEEeCCCCCCccceEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK--NIRITEESSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~--~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      .+....|.|.++...|.|.|+|.+.|..|.....+.+.+..+|.+..  ...........+.|.+.....  ....  .+
T Consensus        47 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~--~~~~--~v  122 (289)
T 3ejj_X           47 ESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDP--ALKD--SV  122 (289)
T ss_dssp             CSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCG--GGGG--SE
T ss_pred             cCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCC--Ccce--EE
Confidence            33456899999999999999999999888877788888877665311  111223345667777765421  1111  13


Q ss_pred             EEEe-CCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCC---
Q psy6638          92 QYKS-SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPG---  167 (273)
Q Consensus        92 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~---  167 (273)
                      .|.. .+.... ........ ....+.|.++.......|++.+.+.. .+..+..+.+......+ .+|. +.....   
T Consensus       123 ~W~~~~~~~~~-~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~~~~-~~~~~~~~~l~V~~~~~-~~p~-i~~~~~~~~  197 (289)
T 3ejj_X          123 SLMREGGRQVL-RKTVYFFS-PWRGFIIRKAKVLDSNTYVCKTMVNG-RESTSTGIWLKVNRVHP-EPPQ-IKLEPSKLV  197 (289)
T ss_dssp             EEEEGGGEECC-TTCCEEEE-TTTEEEESSCCGGGCEEEEEEEEETT-EEEECCCEEEEEESSCC-CCCE-EEEESSSEE
T ss_pred             EEEecCCeecC-CCccEEEC-CCCCEEEeecccccCEEEEEEEEeCC-CccccccEEEEEEECCC-CCCe-EEecCCceE
Confidence            3322 211100 01111111 23468888888888889999988432 22223334443332211 1222 221110   


Q ss_pred             ccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCC
Q psy6638         168 VVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVG  247 (273)
Q Consensus       168 ~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g  247 (273)
                      ......+.|........      -...+.|...+..-.........  ...........|.++.....-.|+..|.|..|
T Consensus       198 ~~~g~~~~l~C~~~~~~------p~~~i~W~~~~~~~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  269 (289)
T 3ejj_X          198 RIRGEAAQIVCSATNAE------VGFNVILKRGDTKLEIPLNSDFQ--DNYYKKVRALSLNAVDFQDAGIYSCVASNDVG  269 (289)
T ss_dssp             CCSSSCEEEEEEEEESS------SCCEEEEEETTEECCCCEEEEEC--SSSEEEEEEEEESSCCSSSCEEEEEEEECSSC
T ss_pred             EEeCCcEEEEEEeCCCC------CceEEEEEECCEEeeccCCcccc--cceEEeeEEEEEEeecccCCEEEEEEEEcCCC
Confidence            01223344433322100      01234444433211000000000  00001134678888888888889999999988


Q ss_pred             cCCC
Q psy6638         248 KGPF  251 (273)
Q Consensus       248 ~~~~  251 (273)
                      ....
T Consensus       270 ~~~~  273 (289)
T 3ejj_X          270 TRTA  273 (289)
T ss_dssp             EEEE
T ss_pred             Cccc
Confidence            6543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.25  E-value=1.9e-05  Score=56.88  Aligned_cols=119  Identities=13%  Similarity=0.148  Sum_probs=78.2

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEE-EeeccEEEEEEeCCCCCCccceEEEEEEEe
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRIT-EESSRSLQISWTAPYSGNTAITQYIIQYKS   95 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~-~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~   95 (273)
                      ...|.|.++..+|.|.|+|.+.|..|.....+.+.+..+|..+...... ......+.|.+.... +. +..  .+.|..
T Consensus        83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~-g~-p~~--~v~W~~  158 (214)
T 3jz7_A           83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKE-GS-LPL--QFEWQK  158 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSB-CC-SSC--EEEEEE
T ss_pred             cccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCC-CC-CCC--EEEEEE
Confidence            4569999999999999999999998888778888888888766533221 223456778877631 11 222  355555


Q ss_pred             CCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          96 SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      .+..-... ...........+.|.++.......|+|.|.|..|..
T Consensus       159 ~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~  202 (214)
T 3jz7_A          159 LSDSQTMP-TPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD  202 (214)
T ss_dssp             CSTTCCCC-GGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             CCCCCccC-ccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcE
Confidence            32211100 000111234578899999999999999999988743

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens}

Probab=98.25  E-value=3.9e-06  Score=60.76  Aligned_cols=101  Identities=14%  Similarity=0.039  Sum_probs=64.2

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCC--CCccce
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG--LTPYTK  235 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~~~  235 (273)
                      +|.++++..  .+... .|.|+++...  .+.+..|.|+|+..+...+..    ...+...  ....+.|++  |.+...
T Consensus        10 ~P~nv~~~s--~n~~~-iL~W~p~~~~--~~~~~~Y~Vqy~~~~~~~W~~----~~~C~~i--~~~~Cdlt~~~~~~~~~   78 (211)
T 3g9v_A           10 KPQRVQFQS--RNFHN-ILQWQPGRAL--TGNSSVYFVQYKIYGQRQWKN----KEDCWGT--QELSCDLTSETSDIQEP   78 (211)
T ss_dssp             CCEEEEEEE--ETTEE-EEEEECCCC-----CCCEEEEEEEETTCSSCEE----EEEEEEE--CCSEEECTGGGCSTTSC
T ss_pred             CCceeEEEE--EcCce-EEEECCCCCC--CCCCeEEEEEEEECCCCceEE----CccCCCC--CCCEECCCCcccccCcc
Confidence            588999977  55544 5999999762  333678999999875432211    1111111  235666764  467889


Q ss_pred             EEEEEEEecCCCcCCCCccEEEE----cCCCCCcccccc
Q psy6638         236 YAIVVRGYNSVGKGPFSEPFIAR----TNEGDFLFLFCA  270 (273)
Q Consensus       236 Y~~~v~a~n~~g~~~~s~~~~~~----t~~~~P~~~~~~  270 (273)
                      |.+||+|.+..|.|+++....|.    |..++| .+.+.
T Consensus        79 Y~~RV~A~~~~~~S~ws~~~~f~~~~~t~i~PP-~v~v~  116 (211)
T 3g9v_A           79 YYGRVRAASAGSYSEWSMTPRFTPWWETKIDPP-VMNIT  116 (211)
T ss_dssp             EEEEEEEEETTEECCCEECCCBCHHHHCBCCCC-EEECC
T ss_pred             EEEEEEEECCCCcCCCEecCcccccccCccCCC-EEEEE
Confidence            99999999998888887555543    334444 35543

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.22  E-value=3.3e-05  Score=61.64  Aligned_cols=209  Identities=12%  Similarity=0.082  Sum_probs=109.9

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCce-eEEEEEEecCCCCCcceEE-------EEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPEAPKNIRI-------TEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~-~~~~~~~~~~P~~p~~~~~-------~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      .|.|.++..+|.|.|+|.+.|..|... ....+.+...|..+..+.+       .......+.|.+......  +.   .
T Consensus       178 ~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~---~  252 (403)
T 3laf_A          178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYP--PP---S  252 (403)
T ss_dssp             CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEES--CC---E
T ss_pred             eEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCC--CC---e
Confidence            699999999999999999999887654 3666777766654433222       112344555555432111  11   3


Q ss_pred             EEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccC
Q psy6638          91 IQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVD  170 (273)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~  170 (273)
                      +.|...+............. ....+.|.++.......|++.|.|..|....+..+.+...+... ..|..+.+.    .
T Consensus       253 ~~W~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~-~~~~~~~~~----~  326 (403)
T 3laf_A          253 FTWLRGEEVIQLRSKKYSLL-GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFL-NHPSNLYAY----E  326 (403)
T ss_dssp             EEEEETTEECCCSSSSEEEE-TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEE-ECCCCEECC----T
T ss_pred             EEEEECCeeccCCCceEEEC-CccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEe-ecCcceEEe----c
Confidence            55554432111111111111 23568888899888899999999887643322223332211100 122233332    2


Q ss_pred             CceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCC
Q psy6638         171 PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       171 ~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~  250 (273)
                      ...+.|........  .     -.+.|...+..-.....     ....  ....+.|.++.....-.|+..|.|..|...
T Consensus       327 g~~v~l~C~~~g~p--~-----p~v~W~~~g~~~~~~~~-----~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  392 (403)
T 3laf_A          327 SMDIEFECAVSGKP--V-----PTVNWMKNGDVVIPSDY-----FQIV--GGSNLRILGVVKSDEGFYQCVAENEAGNAQ  392 (403)
T ss_dssp             TCCEEECCEEEEES--C-----CEEEEEETTEECCCSSS-----EEEE--TTTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCeEEEEEEEeecc--C-----CEEEEEECCEECCCCCc-----EEEe--cCccEEEeccccccCEEEEEEEEcCCceEE
Confidence            23344443321110  0     13444443321100000     0001  124688888888888889999999988754


Q ss_pred             CC
Q psy6638         251 FS  252 (273)
Q Consensus       251 ~s  252 (273)
                      .+
T Consensus       393 ~~  394 (403)
T 3laf_A          393 SS  394 (403)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.21  E-value=4.1e-05  Score=67.05  Aligned_cols=209  Identities=14%  Similarity=0.132  Sum_probs=108.5

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcce-EEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI-RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE   97 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~-~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~   97 (273)
                      +|.|.++..+|.|.|+|.|.|..|.......+.+..+|...... .........+.|.+.....   +.  ..+.|...+
T Consensus       307 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~---p~--~~v~W~k~g  381 (816)
T 3dmk_A          307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGN---PI--KTVSWMKDG  381 (816)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEE---CC--CEEEEEETT
T ss_pred             eEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEecc---CC--CEEEEEECC
Confidence            79999999999999999999999987777777776544211111 1122234455666553211   11  134555443


Q ss_pred             CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecC--CccCCceEE
Q psy6638          98 EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP--GVVDPTELL  175 (273)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~--~~~~~~~i~  175 (273)
                      ..         .......+.|.++.......|+|.|.|..|....+..+.+..    ...+|.......  .......+.
T Consensus       382 ~~---------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~----~~~~p~i~~~~~~~~v~~G~~v~  448 (816)
T 3dmk_A          382 KA---------IGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGG----RFDPPVIRQAFQEETMEPGPSVF  448 (816)
T ss_dssp             EE---------CSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCC----SSCCCEEEEECCCEEECSSSCEE
T ss_pred             EE---------CCCCCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEcc----ccCCCceEecCcceEEcCCCCEE
Confidence            21         122345788999999999999999999877433232222211    111222111000  001223444


Q ss_pred             EEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeE-EecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCC
Q psy6638         176 IKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSV-ELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFS  252 (273)
Q Consensus       176 l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s  252 (273)
                      |........       ...+.|...+..-.....+..... ...........|.++.....-.|+..|.|..|....+
T Consensus       449 L~C~~~g~p-------~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  519 (816)
T 3dmk_A          449 LKCVAGGNP-------TPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHS  519 (816)
T ss_dssp             EEEEEECSS-------CCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEE
T ss_pred             EEEEEecCC-------CCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEE
Confidence            444332110       013444433221100000111111 1111112357888888888888899999988765433

>3bes_R Interferon-gamma binding protein C4R; orthopoxvirus, protein complex antiviral defense, cytokine, glycoprotein, receptor, immune; HET: NAG BMA; 2.20A {Ectromelia virus}

Probab=98.20  E-value=0.00036  Score=51.01  Aligned_cols=174  Identities=12%  Similarity=0.148  Sum_probs=100.9

Q ss_pred             CcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCC--CCCCeEEEEEEEeC
Q psy6638          59 PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPL--LPATQYQVRLLAEN  135 (273)
Q Consensus        59 p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~y~~~v~a~~  135 (273)
                      |.++++.+. +-.-.|.|++       ...|.|+++.-+ ..|...    +.....+.+.+.+.  ..+..|.+||+|  
T Consensus         2 ~~NV~~~S~-NF~~IL~W~p-------n~tYtVQyk~yg~~~W~~~----C~ni~~t~CDlS~~~~d~~~~Y~aRV~A--   67 (250)
T 3bes_R            2 ITSYKFESV-NFDSKIEWTG-------NGLYNISLRNYGIKTWQTM----YTNVPEGTYDISGFPNNDFVSFWVKFEQ--   67 (250)
T ss_dssp             EEEEEEEEE-TTEEEEEEEE-------SSCEEEEEEETTCCSCEEE----EEEECSEEEECTTSSCSSSSCEEEEEEE--
T ss_pred             CEEEEEEEE-CCccEEEeCC-------CCEEEEEEEECCcChhHhh----CcCCCCCEEECCCccccCCceEEEEEEE--
Confidence            566666654 4556899997       147999999877 468842    33345578888763  355679999999  


Q ss_pred             CCCCCCCCcceEE-EecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccc---e----------eeeEEEEEEEcC
Q psy6638         136 PLGMSETGAELQA-STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNG---V----------LLGYDVGYQISS  201 (273)
Q Consensus       136 ~~g~~~~s~~~~~-~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~---~----------i~~y~v~~~~~~  201 (273)
                        +.+  .....+ ......--+|| .+.+..   ...+|.|.-.+|.... +|   .          ...|.|.++..+
T Consensus        68 --~es--~~F~~~~~p~~~T~IGPP-~V~l~~---~~~sI~V~I~~P~~~~-~g~~~siy~~d~~~~~~l~Y~v~~~~~~  138 (250)
T 3bes_R           68 --GDY--KVDKYCTGLCIEVKIGPP-TVTLTE---YDDHINLYIEHPYATR-GSKKIPIYKRNDMCDIYLLYTANFTFGD  138 (250)
T ss_dssp             --TTE--EEEEEECCHHHHCBCCCC-EEEEEE---ETTEEEEEEECCEEEE-TTEEEECSSCGGGTTCCCEEEEEEEETT
T ss_pred             --ecc--ceeecCCCcccceEECCC-eEEEEE---eCCEEEEEEECCCccc-CCCceeeeccccccccceEEEEEEEECC
Confidence              211  111111 12122222344 566655   3448998888876421 22   1          268999887754


Q ss_pred             CCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecC---CCcCCCCccEEEEcCC
Q psy6638         202 GSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNS---VGKGPFSEPFIARTNE  261 (273)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~---~g~~~~s~~~~~~t~~  261 (273)
                      +.+..    .+ ............. ..|.|++.|-|+|+|.-.   .-.|++|+..-..+..
T Consensus       139 s~e~~----~~-~v~~~~~~~~~~~-~~l~p~t~YCV~Vq~~i~~~~~k~s~~S~~~Ci~~~k  195 (250)
T 3bes_R          139 SEEPV----IY-DIDDYDCTSTGCS-IDFATTEKVCVMAQGATEGLLDKITPWSSEVCLTPKK  195 (250)
T ss_dssp             CSSCE----EE-ECCGGGBCSSEEE-EEECCSSCEEEEEEEECCSSSCCBCCCCCCEEECCCC
T ss_pred             CCcce----EE-EeeecccCcceeE-EEeCCCCcEEEEEEEeCcccccccCCCCcCEeEcCCC
Confidence            42210    00 1110011111222 245589999999999865   3458889888876655

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.18  E-value=3.1e-05  Score=54.85  Aligned_cols=116  Identities=13%  Similarity=0.125  Sum_probs=71.5

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCC---CcceEEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA---PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~---p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      ...|.|.++..+|.|.|+|.+.|. |.....+.+.+..+|..   +...  .......+.|.+.....   +..  .+.|
T Consensus        55 ~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~~~p~~~~~~~~~--~~~~g~~v~l~C~~~g~---p~p--~i~W  126 (190)
T 2wv3_A           55 NMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPDITGHKRSE--NKNEGQDAMMYCKSVGY---PHP--EWMW  126 (190)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEECCCEEEEECSEE--EEETTSCEEEEEEEECS---SCC--EEEE
T ss_pred             cEEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEecCCcccccCCcc--eeeCCCcEEEEEEeCcc---CCC--ceEE
Confidence            468999999999999999999999 77777888888777642   2221  22334556666654211   111  2334


Q ss_pred             Ee--CCCCC----CCccceEEecCCccEEEecCCC-CCCeEEEEEEEeCCCCCC
Q psy6638          94 KS--SEEMW----PTQPLKIIVPGSQTSATLQPLL-PATQYQVRLLAENPLGMS  140 (273)
Q Consensus        94 ~~--~~~~~----~~~~~~~~~~~~~~~~~~~~l~-~~~~y~~~v~a~~~~g~~  140 (273)
                      ..  .+...    ...............+.|.++. ......|.+.|.|..|..
T Consensus       127 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~  180 (190)
T 2wv3_A          127 RKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSA  180 (190)
T ss_dssp             EEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEE
T ss_pred             EEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcc
Confidence            33  21100    0001111222233468888888 788899999999988743

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.18  E-value=0.00035  Score=54.16  Aligned_cols=110  Identities=15%  Similarity=0.086  Sum_probs=65.4

Q ss_pred             EEEEeeeeeCCCE-EEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEE----eeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          19 ELGIANVLRQDSG-TLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITE----ESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        19 ~l~i~~~~~~~~~-~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~----~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      .|.|.++..+|.| .|+|.|.|..|.........+...|  |..+....    .....+.|.+.....+  ..  -.+.|
T Consensus        90 ~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~--p~~~~~~~~~~~~~G~~v~L~C~~~g~p--~~--~~i~W  163 (329)
T 3oq3_B           90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKP--PSCIPETYELGTHDKYGIDLYCGILYAK--HY--NNITW  163 (329)
T ss_dssp             EEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCC--CSCEEEEEETTSSTTTCEEEECCCCSCC--CC--CEEEE
T ss_pred             eEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCC--CcEeccccceEEeCCCcEEEEeccCCCC--CC--ceEEE
Confidence            7999999999999 9999999998875554433333332  22221111    1244677777543211  01  23555


Q ss_pred             EeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          94 KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ...+.............  ...+.|.++.......|++.|.|.
T Consensus       164 ~k~~~~l~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~n~  204 (329)
T 3oq3_B          164 YKNNQELIIDGTKYSQS--GQNLIIHNPELEDSGRYDCYVHYD  204 (329)
T ss_dssp             EETTEECCCSSSSEEEE--TTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             EECCccCCCCCceEecC--CCEEEEeecChhhCEEEEEEEEec
Confidence            55432211011111111  367888899988889999999986

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.17  E-value=9.3e-06  Score=53.25  Aligned_cols=44  Identities=23%  Similarity=0.262  Sum_probs=39.4

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec-CCCCCc
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE-TPEAPK   60 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~-~P~~p~   60 (273)
                      .+.|.|.++.++|.|.|+|.+.|..|.....+.|.|.. +|..|.
T Consensus        74 ~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~  118 (126)
T 2dav_A           74 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPN  118 (126)
T ss_dssp             EEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCCCSCCC
T ss_pred             eEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEecCCCCCe
Confidence            57899999999999999999999999998999999988 665554

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.17  E-value=9.8e-05  Score=52.69  Aligned_cols=115  Identities=14%  Similarity=0.129  Sum_probs=69.3

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCC-C--CceeEEEEEEecCCCCCcceE---EEEeeccEEEEEEeCCCCCCccceEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYH-G--TAEMTIQLLVQETPEAPKNIR---ITEESSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~-g--~~~~~~~~~~~~~P~~p~~~~---~~~~~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      ..|.|.++.+.|.|.|+|.+.|.. |  .....+.+.+...+..|.-..   ........++|.+.....   +.   .+
T Consensus        58 ~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~---~~---~v  131 (198)
T 1ugn_A           58 GQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA---FD---GF  131 (198)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSC---CS---EE
T ss_pred             cEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCC---Cc---EE
Confidence            479999999999999999999987 5  233466777766443332110   112245667888876422   11   34


Q ss_pred             EEEeCCCCCCCccce--EEe-cCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          92 QYKSSEEMWPTQPLK--IIV-PGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      .|...+.........  ... ......+.|.++.......|++.|.|..+
T Consensus       132 ~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          132 ILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             EEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            555544321100000  001 11236788999999999999999998765

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.15  E-value=1.8e-05  Score=56.26  Aligned_cols=123  Identities=18%  Similarity=0.269  Sum_probs=73.7

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCC----CcceEEEEeeccEEEEEEeCCCCCCccceE
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA----PKNIRITEESSRSLQISWTAPYSGNTAITQ   88 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~----p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~   88 (273)
                      .++....|.|.++..+|.|.|+|.+.|..|.......+.+..+|..    +............+.|.+.....   +.. 
T Consensus        58 ~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~---p~p-  133 (197)
T 3lcy_A           58 SDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGR---PVP-  133 (197)
T ss_dssp             ESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEE---SCC-
T ss_pred             eCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeee---eCC-
Confidence            4566778999999999999999999999988777777777555432    11122233345556666653211   111 


Q ss_pred             EEEEEEeCCCCCCCcc-ceEEecCCccEEEecCCCC-CCeEEEEEEEeCCCCCC
Q psy6638          89 YIIQYKSSEEMWPTQP-LKIIVPGSQTSATLQPLLP-ATQYQVRLLAENPLGMS  140 (273)
Q Consensus        89 y~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~~~y~~~v~a~~~~g~~  140 (273)
                       .+.|...+....... ...........+.|.++.. .....|++.|.|..|..
T Consensus       134 -~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  186 (197)
T 3lcy_A          134 -AMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV  186 (197)
T ss_dssp             -EEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEE
T ss_pred             -eeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCce
Confidence             244544432211111 1122222335677888774 56788899999988743

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.14  E-value=6e-05  Score=62.47  Aligned_cols=120  Identities=15%  Similarity=0.055  Sum_probs=76.6

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcc----eEEEEeeccEEEEEEeCCCCCCccceEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN----IRITEESSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~----~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      ....|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.....    ..........+.|.+....  .....  .+
T Consensus       271 ~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g--~P~p~--~v  346 (524)
T 2ec8_A          271 RQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEA--FPKPE--HQ  346 (524)
T ss_dssp             EEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEE--ESCCC--EE
T ss_pred             eEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEee--cCCCc--EE
Confidence            3568999999999999999999999999888888888776642211    1122334455666665321  11111  35


Q ss_pred             EEEeCCCCCCCccceEEecC------CccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          92 QYKSSEEMWPTQPLKIIVPG------SQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      .|...+..............      ....+.|.++.......|+|.|.|..|.
T Consensus       347 ~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  400 (524)
T 2ec8_A          347 QWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN  400 (524)
T ss_dssp             EEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             EEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCce
Confidence            66655432221111111111      1246888899998899999999998885

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.13  E-value=2.9e-05  Score=58.78  Aligned_cols=119  Identities=19%  Similarity=0.239  Sum_probs=78.5

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCC---CcceEEEEeeccEEEEEEeCCCCCCccceEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA---PKNIRITEESSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~---p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      +....|.|.++..+|.|.|+|.+.|..|.....+.+.+..+|..   |...  .......+.|.+.....  .+.   .+
T Consensus       152 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~--~~~~g~~v~l~C~~~g~--p~~---~v  224 (284)
T 2rik_A          152 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV--ETLKGADVHLECELQGT--PPF---QV  224 (284)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCE--EECTTCCEEEEEECBSS--SCC---EE
T ss_pred             CCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcc--eecCCCeEEEEEEEEec--CCC---EE
Confidence            45678999999999999999999999998888888888887752   3332  22345567777765321  111   35


Q ss_pred             EEEeCCCCCCCcc-ceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          92 QYKSSEEMWPTQP-LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        92 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      .|...+....... ...........+.|.++.......|.+.|.|..|..
T Consensus       225 ~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  274 (284)
T 2rik_A          225 SWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSY  274 (284)
T ss_dssp             EEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCce
Confidence            5555432111011 112222233567888888888899999999988743

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.11  E-value=7.3e-05  Score=53.97  Aligned_cols=119  Identities=20%  Similarity=0.194  Sum_probs=73.2

Q ss_pred             CcEEEEEEeeeee-CCCEEEEEEEEcCCCC-ceeEEEEEEecCCCCCc---ceE-----EEEeeccEEEEEEeCCCCCCc
Q psy6638          15 GMISELGIANVLR-QDSGTLSCLATNYHGT-AEMTIQLLVQETPEAPK---NIR-----ITEESSRSLQISWTAPYSGNT   84 (273)
Q Consensus        15 ~~~~~l~i~~~~~-~~~~~y~~~a~n~~g~-~~~~~~~~~~~~P~~p~---~~~-----~~~~~~~~~~l~W~~~~~~~~   84 (273)
                      +..+.|.|.++.. .|.|.|+|.+.|..|. ....+.+.+...+..|.   .+.     ........+.|.+....  ..
T Consensus        61 ~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g--~p  138 (212)
T 2yd1_A           61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG--NP  138 (212)
T ss_dssp             TTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEEC--SS
T ss_pred             CCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEecc--CC
Confidence            3457899999999 9999999999999988 56677787766543211   111     11122445666655421  11


Q ss_pred             cceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          85 AITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        85 ~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ..   .+.|...+............  ....+.|.++.......|.|.|.|..|..
T Consensus       139 ~p---~i~W~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  189 (212)
T 2yd1_A          139 TP---NIYWIKNQTKVDMSNPRYSL--KDGFLQIENSREEDQGKYECVAENSMGTE  189 (212)
T ss_dssp             CC---EEEEEETTEECCTTSTTEEE--ETTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CC---eEEEEECCeEcccCCCeEEc--cCCeEEEccCChhhCEEEEEEeecCCCce
Confidence            11   25555543221111111111  12378888999999999999999988854

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=98.11  E-value=5.1e-06  Score=52.39  Aligned_cols=43  Identities=21%  Similarity=0.295  Sum_probs=37.2

Q ss_pred             ecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          12 LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      ...+..++|.|.++..+|.|.|+|.|.|..|.....+.+.++.
T Consensus        57 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           57 ENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            3466778999999999999999999999999988888877753

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.11  E-value=0.0016  Score=50.00  Aligned_cols=220  Identities=10%  Similarity=0.091  Sum_probs=107.3

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCC-----CceeEEEEEEecCCCCCcceEE---EEeeccEEEEEEeCCCCCCccceE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHG-----TAEMTIQLLVQETPEAPKNIRI---TEESSRSLQISWTAPYSGNTAITQ   88 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g-----~~~~~~~~~~~~~P~~p~~~~~---~~~~~~~~~l~W~~~~~~~~~~~~   88 (273)
                      ...|.|.++.++|.|.|+|.|.|..+     .....+.+.+...+.+|.-...   .......++|.+.....   + ..
T Consensus        73 ~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~---~-~~  148 (316)
T 3vh8_G           73 QESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIM---F-EH  148 (316)
T ss_dssp             SSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSC---C-SE
T ss_pred             eEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCC---C-cE
Confidence            34799999999999999999986432     2234566666655444431110   12245567777775321   1 12


Q ss_pred             EEEEEEeCCCCCCCcc--ceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC---CCCCcceEEEecCCCCCCCCeeEE
Q psy6638          89 YIIQYKSSEEMWPTQP--LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM---SETGAELQASTLEEAPNGAPREVT  163 (273)
Q Consensus        89 y~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~---~~~s~~~~~~~~~~~p~~~p~~~~  163 (273)
                      |  .|...+.......  ...........+.|.++.......|+|.|.|..|.   +..+..+.+..... + .+| .+.
T Consensus       149 ~--~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~-~-~~p-~i~  223 (316)
T 3vh8_G          149 F--FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGP-Y-EKP-SLS  223 (316)
T ss_dssp             E--EEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECS-S-CCC-EEE
T ss_pred             E--EEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCC-C-CCC-eEE
Confidence            2  3333332211000  01111113356888899999999999999998774   22344444444321 1 122 222


Q ss_pred             ecC--CccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEE
Q psy6638         164 SDP--GVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVR  241 (273)
Q Consensus       164 ~~~--~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~  241 (273)
                      ...  .......++|.......   .     -.+.|...+.....   ...............+.|.++.  ..=.|+..
T Consensus       224 ~~~~~~v~~G~~v~L~C~~~~~---~-----~~~~W~k~g~~~~~---~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~  290 (316)
T 3vh8_G          224 AQPGPKVQAGESVTLSCSSRSS---Y-----DMYHLSREGGAHER---RLPAVRKVNRTFQADFPLGPAT--HGGTYRCF  290 (316)
T ss_dssp             EESCSCCCTTSCCEEEEEESSC---C-----SEEEEEETTSSCCE---EEECEECTTSCEEEEEECC-------CEEEEE
T ss_pred             eCCCCeecCCCcEEEEEECCCC---C-----cEEEEEECCCcCCC---ceeceeccCCceeEEEEcCCcC--CCEEEEEE
Confidence            211  00233445555554321   1     13444444432110   0000011111222567777777  44466778


Q ss_pred             EecCCCc---CCCCccEEEE
Q psy6638         242 GYNSVGK---GPFSEPFIAR  258 (273)
Q Consensus       242 a~n~~g~---~~~s~~~~~~  258 (273)
                      |.|..+.   +..|+.+.+.
T Consensus       291 a~n~~~~~~~s~~S~~~~l~  310 (316)
T 3vh8_G          291 GSFRHSPYEWSDPSDPLLVS  310 (316)
T ss_dssp             EEBTTBTTEECCCCCCEEC-
T ss_pred             eecCCCchhccCCCCcEEEE
Confidence            8887653   4566666544

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.11  E-value=0.0002  Score=53.37  Aligned_cols=206  Identities=13%  Similarity=0.033  Sum_probs=108.5

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC--CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE--APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~--~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      ..+|.|.++..+|.|.|+|.+.|..++.  .+.+.+..+|.  .|...  .......+.|.+......  +  ...+.|.
T Consensus        47 ~~~l~i~~~~~~d~G~Y~C~~~~~~~s~--~~~l~v~~~~~~~~~~~~--~~~~g~~v~l~C~~~~~~--p--~~~v~W~  118 (262)
T 3rjd_A           47 TPSYRITSASVNDSGEYRCQRGLSGRSD--PIQLEIHRGWLLLQVSSR--VFTEGEPLALRCHAWKDK--L--VYNVLYY  118 (262)
T ss_dssp             SSEEEESSCCGGGCEEEEEEESSSCCCC--CEEEEEECSSEEEEESCS--EEETTSCEEEEEEEGGGC--C--CEEEEEE
T ss_pred             CCeEEEecCCcccCeEEEEEEecCCccc--cEEEEEeccceEecCCCe--EEecCCeEEEEEEccCCC--C--CceEEEE
Confidence            4579999999999999999999876654  34444443331  11111  112345566766642111  1  1234454


Q ss_pred             eCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecC--CccCCc
Q psy6638          95 SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP--GVVDPT  172 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~--~~~~~~  172 (273)
                      ..+..       .........+.|.++.......|++.+.|..+.  .+..+.+......+  +| .+....  ......
T Consensus       119 ~~g~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~--~~~~~~l~V~~~~~--~p-~~~~~~~~~~~~g~  186 (262)
T 3rjd_A          119 RNGKA-------FKFFHWNSNLTILKTNISHNGTYHCSGMGKHRY--TSAGISVTVKELFP--AP-VLNASVTSPLLEGN  186 (262)
T ss_dssp             ETTEE-------EEEEEECCCEEESSCCGGGCEEEEEEEESSSEE--EEECEEEEEECSSC--CC-EEEESSCSSEETTC
T ss_pred             ECCcc-------ccccCCCCeEEEEECChhhCEEEEEEEeCCCCc--cccceEEEeccCCC--CC-eEeecCceeecCCC
Confidence            43321       111122456788888888888999999887642  22333333322111  22 222211  002345


Q ss_pred             eEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcC-CC
Q psy6638         173 ELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKG-PF  251 (273)
Q Consensus       173 ~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~-~~  251 (273)
                      .+.|........  ..+.....+.|...+..        ....    .....+.|.++.....-.|...|.|..|.. ..
T Consensus       187 ~~~l~C~~~~~p--~~p~~~~~~~w~~~~~~--------~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~  252 (262)
T 3rjd_A          187 LVTLSCETKLLL--QRPGLQLYFSFYMGSKT--------LRGR----NTSSEYQILTARREDSGLYWCEAATEDGNVLKR  252 (262)
T ss_dssp             CEEEEEECCCCC--C-----EEEEEEETTEE--------EEEE----ESCCEEEESSCCGGGCEEEEEEEEETTSSCEEE
T ss_pred             eEEEEeEcccCC--CCCCccEEEEEEeCCcE--------eccc----CCCceEEEEEechhhCeEEEEEEEcccCceEEe
Confidence            666766654321  10112333444443321        1111    113467888888888888999999988853 33


Q ss_pred             CccEE
Q psy6638         252 SEPFI  256 (273)
Q Consensus       252 s~~~~  256 (273)
                      |..+.
T Consensus       253 s~~~~  257 (262)
T 3rjd_A          253 SPELE  257 (262)
T ss_dssp             CCCEE
T ss_pred             cCCeE
Confidence            44443

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.10  E-value=4.9e-05  Score=54.20  Aligned_cols=118  Identities=11%  Similarity=0.125  Sum_probs=71.8

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCC--ceeEEEEEEecCCCCCcceEE---EEeeccEEEEEEeCCCCCCccceEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGT--AEMTIQLLVQETPEAPKNIRI---TEESSRSLQISWTAPYSGNTAITQY   89 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~--~~~~~~~~~~~~P~~p~~~~~---~~~~~~~~~l~W~~~~~~~~~~~~y   89 (273)
                      .....|.|.++.++|.|.|+|.|.|..|.  ....+.+.+...+.+|.-...   .......++|.+....    +.  -
T Consensus        55 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~----~~--~  128 (196)
T 3p2t_A           55 KNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRS----PM--D  128 (196)
T ss_dssp             SSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEE----EE--E
T ss_pred             CceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCC----CC--C
Confidence            45678999999999999999999998873  234666667655444431110   1123456777776431    11  1


Q ss_pred             EEEEEeCCCCCCCccce--EEecCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          90 IIQYKSSEEMWPTQPLK--IIVPGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        90 ~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      .+.|...+.........  .........+.|.++.......|++.|.|..+
T Consensus       129 ~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          129 TFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             EEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            34455544321100000  11112345688899999999999999999765

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.10  E-value=5.5e-05  Score=54.33  Aligned_cols=114  Identities=12%  Similarity=0.134  Sum_probs=73.5

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCC-CceeEEEEEEecCCCCCcceEEE---EeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHG-TAEMTIQLLVQETPEAPKNIRIT---EESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g-~~~~~~~~~~~~~P~~p~~~~~~---~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      .|.|.++..+|.|.|+|.+.+..+ .....+.+.+..++..|.-. ..   ......+.|.+.....   +.   .+.|.
T Consensus        72 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~-~~~~~~~~g~~v~l~C~~~~~---pp---~i~W~  144 (208)
T 3r4d_A           72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQ-VTNTTVKELDSVTLTCLSNDI---GA---NIQWL  144 (208)
T ss_dssp             CEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEE-ESCSSCCTTCCEEEEEECSCT---TC---EEEEE
T ss_pred             eEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEe-cCCceEeeCCCEEEEEECCCC---CC---ceEEE
Confidence            699999999999999999999854 44446677776665544321 11   1234567777775421   22   35555


Q ss_pred             eCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          95 SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ..+...... ...........+.|.++.......|.|.|.|..|..
T Consensus       145 ~~g~~l~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  189 (208)
T 3r4d_A          145 FNSQSLQLT-ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR  189 (208)
T ss_dssp             ETTEECCCC-SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCE
T ss_pred             ECCEeCCCC-CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcc
Confidence            544322111 122233344678899999999999999999998853

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.08  E-value=1.2e-05  Score=50.98  Aligned_cols=42  Identities=21%  Similarity=0.203  Sum_probs=37.5

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA   58 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~   58 (273)
                      ..+|.|.++.++|.|.|+|.|.|..|.....+.+.+..+|.+
T Consensus        61 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~~~P~~  102 (103)
T 1wwb_X           61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI  102 (103)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCCC
T ss_pred             EEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEECCCCCC
Confidence            346999999999999999999999999999999988877753

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.07  E-value=1.7e-05  Score=56.33  Aligned_cols=121  Identities=20%  Similarity=0.230  Sum_probs=72.3

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcce----EEEEeeccEEEEEEeCCCCCCccceEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI----RITEESSRSLQISWTAPYSGNTAITQY   89 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~----~~~~~~~~~~~l~W~~~~~~~~~~~~y   89 (273)
                      .+....|.|.++...|.|.|+|.+.|..|.......+.+...+.+|.-.    .........+.|.+......  ..   
T Consensus        59 ~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~---  133 (194)
T 2a38_A           59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP--TP---  133 (194)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEES--CC---
T ss_pred             CCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEec--CC---
Confidence            3456789999999999999999999998887777777776433332211    01122344556665532111  11   


Q ss_pred             EEEEEeCCCCCCCc-cceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          90 IIQYKSSEEMWPTQ-PLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        90 ~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      .+.|...+...... .......+....+.|.++.......|++.|.|..|.
T Consensus       134 ~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  184 (194)
T 2a38_A          134 VVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR  184 (194)
T ss_dssp             EEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEE
T ss_pred             eEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCc
Confidence            24555443211111 111222233346778888888888899999998774

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.07  E-value=2.3e-05  Score=60.11  Aligned_cols=122  Identities=19%  Similarity=0.189  Sum_probs=74.8

Q ss_pred             cCCcEEEEEEeeeee-CCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc---ceE-----EEEeeccEEEEEEeCCCCCC
Q psy6638          13 EDGMISELGIANVLR-QDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK---NIR-----ITEESSRSLQISWTAPYSGN   83 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~-~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~---~~~-----~~~~~~~~~~l~W~~~~~~~   83 (273)
                      .++....|.|.++.. .|.|.|+|.|.|..|.....+.+.+...+..|.   .+.     ........+.|.+...  +.
T Consensus        58 ~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~--g~  135 (304)
T 2yd9_A           58 DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS--GN  135 (304)
T ss_dssp             TTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEE--CS
T ss_pred             cCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECc--cC
Confidence            455568899999997 999999999999999877788888866543221   111     1112244556655532  11


Q ss_pred             ccceEEEEEEEeCCCCCCCcc--ceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          84 TAITQYIIQYKSSEEMWPTQP--LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        84 ~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ...   .+.|...+.......  ..... .....+.|.++.......|+|.|.|..|..
T Consensus       136 p~~---~v~W~k~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  190 (304)
T 2yd9_A          136 PDP---EITWFKDFLPVDPSASNGRIKQ-LRSGALQIESSEETDQGKYECVATNSAGVR  190 (304)
T ss_dssp             SCC---EEEEEETTEECCGGGGTTSEEE-CTTSCEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCC---eEEEEECCEECcCCCCcceEEe-CCCeEEEEccCCcccCEEEEEEEEeCCCCE
Confidence            111   355554432111100  01111 223478889999999999999999987743

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.05  E-value=1.3e-05  Score=57.50  Aligned_cols=116  Identities=13%  Similarity=0.060  Sum_probs=66.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEe
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS   95 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~   95 (273)
                      ....|.|.++..+|.|.|+|.+.|..|.....+.+.+..+|..|............+.|.+...  + .+.  -.+.|..
T Consensus        65 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~~--g-~P~--p~v~W~~  139 (202)
T 3bp6_B           65 GKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQAR--G-YPL--AEVSWQN  139 (202)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEEE--E-BSC--CEEEETT
T ss_pred             CeeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEcc--c-cCC--ceEEEEe
Confidence            3468999999999999999999999887777888888877755543211223445566665531  1 011  1244443


Q ss_pred             CCCCCCCccceEEecCCc--cEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          96 SEEMWPTQPLKIIVPGSQ--TSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      .+....   .........  ....+..+.......|.|.|.|..|.
T Consensus       140 ~~~~~~---~~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~  182 (202)
T 3bp6_B          140 VSVPAN---TSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMK  182 (202)
T ss_dssp             CCSCCE---EEEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTT
T ss_pred             CCCCcc---CceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcc
Confidence            322111   111111111  12223345555566778888888774

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=6.8e-06  Score=52.74  Aligned_cols=46  Identities=24%  Similarity=0.293  Sum_probs=40.9

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK   60 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~   60 (273)
                      +..+.|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.+|.
T Consensus        63 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~P~  108 (110)
T 2dm2_A           63 DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPS  108 (110)
T ss_dssp             TCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEECCSCCSS
T ss_pred             CcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEECCCCCCC
Confidence            3456899999999999999999999999998888899988888775

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.03  E-value=2.3e-05  Score=50.80  Aligned_cols=44  Identities=25%  Similarity=0.253  Sum_probs=38.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP   59 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p   59 (273)
                      ..++|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.++
T Consensus        71 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           71 GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQT  114 (116)
T ss_dssp             CEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEECCSCCC
T ss_pred             CeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEeCCCCCC
Confidence            35589999999999999999999999998888889888887654

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.03  E-value=0.0001  Score=52.64  Aligned_cols=61  Identities=20%  Similarity=0.233  Sum_probs=41.7

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCce-----eEEEEEEecCCCCCcceEEEEeeccEEEEEEeC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAE-----MTIQLLVQETPEAPKNIRITEESSRSLQISWTA   78 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~-----~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~   78 (273)
                      ..|.|.++..+|.|.|+|.+.|..|...     ..+.+.+..++..|............+.|.+..
T Consensus        65 ~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~  130 (201)
T 1dr9_A           65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICST  130 (201)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEE
T ss_pred             cEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEec
Confidence            4799999999999999999999877653     356666666655554322222234456666654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.02  E-value=0.00042  Score=52.50  Aligned_cols=212  Identities=10%  Similarity=0.078  Sum_probs=108.1

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcc-eEEEEeeccEEEEEEeCCCCCCccceEEEEEE-Ee
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN-IRITEESSRSLQISWTAPYSGNTAITQYIIQY-KS   95 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~-~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~-~~   95 (273)
                      ..|.|.++..+|.|.|+|.+.|  |. ...+.+.+..+|.+... ..+.......+.|.+...  +  +. .-.+.| +.
T Consensus        57 ~~L~i~~~~~~d~G~Y~C~~~n--g~-~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~--~--p~-~~~v~W~~~  128 (290)
T 2o26_X           57 NEWIQEKAEATRTGTYTCSNSN--GL-TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLT--D--PQ-VSQYSLIEC  128 (290)
T ss_dssp             SEEEETTCCGGGCEEEEEEESS--SC-EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBS--C--CS-CEEEEEEET
T ss_pred             ceEEEeccCHHhCeEEEEEeeC--Cc-cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCC--C--CC-CceEEEEeC
Confidence            6899999999999999999999  54 55777777766643211 112223455677777654  1  11 134556 33


Q ss_pred             CCCCCCCccceEEecCCccEEEecCCCCCCeE-EEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecC---CccCC
Q psy6638          96 SEEMWPTQPLKIIVPGSQTSATLQPLLPATQY-QVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDP---GVVDP  171 (273)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y-~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~---~~~~~  171 (273)
                      .+.... ........ ....+.|.++...... .|++.|.|..|. ..+..+.+..... +..+|. +....   .....
T Consensus       129 ~g~~l~-~~~~~~~~-~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~-~~s~~~~l~V~~~-~~~~P~-i~~~~~~~~v~~G  203 (290)
T 2o26_X          129 DGKSLP-TDLTFVPN-PKAGITIKNVKRAYHRLCVRCAAQRDGTW-LHSDKFTLKVREA-IKAIPV-VSVPETSHLLKKG  203 (290)
T ss_dssp             TSCCCC-TTCEEEEE-TTTEEEEESCCGGGTTCEEEEEEEETTEE-EECCCEEEEEECC-CCSCCE-EECSCSBCCCCTT
T ss_pred             CCcCCC-CCCceeeC-CCCCEEEecccHHHCCCEEEEEEEECCce-EEeEEEEEEEEeC-CCCCCc-cccCCCcceEecC
Confidence            333222 11222222 2346888888888888 889999887442 1222233332211 111221 21111   00123


Q ss_pred             ceEEEEEeCCCCCCccceeeeEEEEEEEcCCCC----ccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCC
Q psy6638         172 TELLIKWKAPPRESWNGVLLGYDVGYQISSGSS----LALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVG  247 (273)
Q Consensus       172 ~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g  247 (273)
                      ..+.|........  .    -..+.|...+...    ......... ............|.++.....-.|...|.|..|
T Consensus       204 ~~v~l~C~~~g~p--~----p~~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g  276 (290)
T 2o26_X          204 DTFTVVCTIKDVS--T----SVNSMWLKMNPQPQHIAQVKHNSWHR-GDFNYERQETLTISSARVDDSGVFMCYANNTFG  276 (290)
T ss_dssp             CCEEEEEEEEESS--T----TCEEEEEEESSSEEECCCEECCEEEE-ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSC
T ss_pred             CcEEEEEEEecCC--c----ceeEEEecCCCCCccceeeccccccc-CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCC
Confidence            3444444432110  0    1124444443320    000000000 000001134678888888888888999999888


Q ss_pred             cC
Q psy6638         248 KG  249 (273)
Q Consensus       248 ~~  249 (273)
                      ..
T Consensus       277 ~~  278 (290)
T 2o26_X          277 SA  278 (290)
T ss_dssp             EE
T ss_pred             cE
Confidence            65

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.00  E-value=0.0003  Score=54.90  Aligned_cols=114  Identities=11%  Similarity=0.038  Sum_probs=72.6

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc-ce----EEEEeeccEEEEEEeCCCC--CCccceEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK-NI----RITEESSRSLQISWTAPYS--GNTAITQYII   91 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~-~~----~~~~~~~~~~~l~W~~~~~--~~~~~~~y~v   91 (273)
                      .|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.... .+    .........+.|.+.....  ...+.  ..+
T Consensus        80 ~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~--~~v  157 (349)
T 4dep_C           80 VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVK--PTI  157 (349)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSC--CEE
T ss_pred             EEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCC--ceE
Confidence            799999999999999999999988887788888876654221 11    1223345678888864211  11111  235


Q ss_pred             EEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCC
Q psy6638          92 QYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL  137 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~  137 (273)
                      .|...+...... .....  ....+.|.++.......|.+.|.|..
T Consensus       158 ~W~k~~~~l~~~-~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~  200 (349)
T 4dep_C          158 TWYMGCYKIQNF-NNVIP--EGMNLSFLIALISNNGNYTCVVTYPE  200 (349)
T ss_dssp             EEEETTEECCSC-SSEEE--ETTEEEEESCCGGGCEEEEEEEEEEE
T ss_pred             EEeeCCEECCCc-cceee--cCCEEEEeeeeecCCcEEEEEEEEee
Confidence            555443221111 11111  23568888898888889999998875

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.00  E-value=0.0018  Score=53.63  Aligned_cols=123  Identities=11%  Similarity=0.086  Sum_probs=67.4

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCc---eeEEEEEEecCCC-CCcceEE-----EEeeccEEEEEEeCCCCCC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTA---EMTIQLLVQETPE-APKNIRI-----TEESSRSLQISWTAPYSGN   83 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~---~~~~~~~~~~~P~-~p~~~~~-----~~~~~~~~~l~W~~~~~~~   83 (273)
                      ..+....|.|.++..+|.|.|+|.|.|..|..   .....+.+...+. +|. +.+     .......+.|.+.....  
T Consensus        65 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~-~~~~~~~~~~~~g~~v~l~C~~~g~--  141 (523)
T 2rcj_C           65 KSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPT-VTLFPPSSEELQANKATLVCLISDF--  141 (523)
T ss_pred             cCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCe-EEecCCcccccCCCceEEEEEeccc--
Confidence            34556789999999999999999999987632   2345566643332 221 111     11223456666664311  


Q ss_pred             ccceEEEEEEEeCCCCCCCccce--EEecCC-----ccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          84 TAITQYIIQYKSSEEMWPTQPLK--IIVPGS-----QTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        84 ~~~~~y~v~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      .+. ...+.|...+.........  ......     ...+.|..........|+|.|.|..|.
T Consensus       142 ~p~-~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  203 (523)
T 2rcj_C          142 YPG-AVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  203 (523)
T ss_pred             cCC-ceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcc
Confidence            111 1345665544322110000  000011     124677777777777888888887663

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.00  E-value=5.8e-05  Score=56.60  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=66.7

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE   97 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~   97 (273)
                      ..|.|.++..+|.|.|+|.+.|..+.......+.+...|..|....+  .....+.|.+........+..  .+.|....
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v--~~G~~v~L~C~~~~~~~~p~~--~v~W~~~~  159 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRV--RVGDTTQMRCSIQSTEEKRVT--KVNWMFSS  159 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEE--ETTCCEEECCBCEESSSSCCC--EEEEEEEC
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCcccc--ccCCcEEEEEEecCCCCCCcc--ceEEEecC
Confidence            57999999999999999999997666544444444444666654333  234455665554100000111  22332211


Q ss_pred             CCC---------------------CCccceEEe----cCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          98 EMW---------------------PTQPLKIIV----PGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        98 ~~~---------------------~~~~~~~~~----~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      +.-                     .........    ......+.|.++.......|.|.|.|..|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  226 (268)
T 3mj6_A          160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE  226 (268)
T ss_dssp             TTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCce
Confidence            100                     000000111    123457888999999999999999986653

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=97.99  E-value=0.00059  Score=53.63  Aligned_cols=223  Identities=16%  Similarity=0.068  Sum_probs=110.2

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS   96 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~   96 (273)
                      ...|.|.++..+|.|.|+|.+.|..+    .+.+.+...+.+|.. .+  .....+.|.+.....+   .  ..+.|...
T Consensus        66 ~~~L~I~~v~~~D~G~Y~C~~~n~~~----~~~l~V~~~~~~~~~-~v--~~G~~v~l~C~~~~~p---~--~~v~W~~~  133 (363)
T 1wio_A           66 NFPLIIKNLKIEDSDTYICEVEDQKE----EVQLLVFGLTANSDT-HL--LQGQSLTLTLESPPGS---S--PSVQCRSP  133 (363)
T ss_dssp             CCCEEECSCCGGGCEEEEEEETTEEE----EEEEEEEEEEESSCS-SE--ESBSCEEEEEECCTTC---C--CCEEEECS
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCC----cEEEEEEeCCCCCce-EE--ecCCCEEEEEEcCCCC---C--CeEEEEcC
Confidence            45799999999999999999988743    444444333222221 11  2455677777653221   1  13555544


Q ss_pred             CCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEE
Q psy6638          97 EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLI  176 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l  176 (273)
                      +..       ..  .....+.|.++.......|++.|.+..+.....  +.+...  .++..+..+.+.    ....+.|
T Consensus       134 ~~~-------~~--~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~--~~l~v~--~~p~~~~~~~~~----~G~~v~l  196 (363)
T 1wio_A          134 RGK-------NI--QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK--IDIVVL--AFQKASSIVYKK----EGEQVEF  196 (363)
T ss_dssp             SSC-------EE--EESSEEEECSBCGGGCEECEEEEEETTEEEEEC--CEECEE--CCSCSEEEEEEE----TBCCEEE
T ss_pred             CCc-------cc--ccceEEEEeeCChhcCCEEEEEEecCCCeEEEE--EEEEEe--cCCCCCCceEEe----cCCEEEE
Confidence            332       11  134578888888888888888888764322111  222211  222233333332    2334444


Q ss_pred             EEeCCCCCCccceeeeEEEEEEEcCCCCcc--------ceeeeeeeEEe------cCCcccEEEcCCCCccceEEEEEEE
Q psy6638         177 KWKAPPRESWNGVLLGYDVGYQISSGSSLA--------LSSYTLKSVEL------DNQYEGELRIPGLTPYTKYAIVVRG  242 (273)
Q Consensus       177 ~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~--------~~~~~~~~~~~------~~~~~~~~~i~~L~p~~~Y~~~v~a  242 (273)
                      ........  .+..-...+.|...+.....        ...+.+.....      .......+.|.++.....=.|+..|
T Consensus       197 ~C~~~~~~--~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  274 (363)
T 1wio_A          197 SFPLAFTV--EKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTL  274 (363)
T ss_dssp             ECCCCCCC--CSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEE
T ss_pred             EEEEeccc--ccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEE
Confidence            44332110  00001223444433321100        00001100000      0111237888888888888889999


Q ss_pred             ecC--CCcCCCCccEEEEcCCCCCcccccc
Q psy6638         243 YNS--VGKGPFSEPFIARTNEGDFLFLFCA  270 (273)
Q Consensus       243 ~n~--~g~~~~s~~~~~~t~~~~P~~~~~~  270 (273)
                      .|.  .|.....-.+.+....+.+-.|.|.
T Consensus       275 ~n~~~~g~~~~~~~l~V~~v~g~~~~l~C~  304 (363)
T 1wio_A          275 ALEAKTGKLHQEVNLVVMRATQLQKNLTCE  304 (363)
T ss_dssp             CBTTTTCCEEEEEEEEEEEECCCSSSEEEE
T ss_pred             EEhhhcCeEEEEEeEEEEEecCCCeeEEEE
Confidence            998  7753333233333333444455554

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.99  E-value=6e-06  Score=52.99  Aligned_cols=47  Identities=28%  Similarity=0.522  Sum_probs=41.6

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK   60 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~   60 (273)
                      .+..++|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.+|.
T Consensus        62 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~P~  108 (110)
T 2dm3_A           62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS  108 (110)
T ss_dssp             TTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECCCCSSS
T ss_pred             cCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCCCCCCC
Confidence            33456899999999999999999999999988888999999888775

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=97.98  E-value=0.00013  Score=52.66  Aligned_cols=117  Identities=11%  Similarity=0.087  Sum_probs=66.6

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe---------------------cCCCCCcceEEEEeeccEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ---------------------ETPEAPKNIRITEESSRSLQI   74 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~---------------------~~P~~p~~~~~~~~~~~~~~l   74 (273)
                      ....|.|.++.++|.|.|+|.|.|  |.......+.+.                     .+|.....+.........+.|
T Consensus        59 g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l  136 (207)
T 3rbs_A           59 GIIEMFMEKLQDEDEGTYTFQLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLL  136 (207)
T ss_dssp             CEEEEEESCCCGGGCEEEEEEEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEE
T ss_pred             CEEEEEECCCChhhCEEEEEEEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEE
Confidence            566899999999999999999999  555444433221                     122111112222334566777


Q ss_pred             EEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          75 SWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        75 ~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      .+.....  .+..  .+.|...+....... ..........+.|.++.+.....|+|.|.|..|.
T Consensus       137 ~C~v~g~--~P~p--~i~W~k~g~~l~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~  196 (207)
T 3rbs_A          137 KCKVANI--KKET--HIVWYKDEREISVDE-KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK  196 (207)
T ss_dssp             EEEEESC--CTTC--EEEEEETTEEECCCC-CCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred             EEEEeCC--CCCC--EEEEEECCEECCCCC-ceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCE
Confidence            7763211  0111  244544332110000 0111112345888999999999999999999884

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=97.98  E-value=0.00034  Score=54.99  Aligned_cols=120  Identities=16%  Similarity=0.190  Sum_probs=73.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE   97 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~   97 (273)
                      ..|.|.++..+|.|.|+|.|.|..+.....+.+.+..+|..|..+  .......+.|.+.......+......+.|...+
T Consensus       142 ~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g  219 (363)
T 1wio_A          142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIV--YKKEGEQVEFSFPLAFTVEKLTGSGELWWQAER  219 (363)
T ss_dssp             SEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSEEEE--EEETBCCEEEECCCCCCCCSSCEEEEEEEEESS
T ss_pred             eEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCCCce--EEecCCEEEEEEEEecccccCCCceeEEEecCC
Confidence            479999999999999999999886666666677777677665332  222355566666432111110113345565544


Q ss_pred             CCCCCc-------cceEEe------------cCCccEEEecCCCCCCeEEEEEEEeCC--CCC
Q psy6638          98 EMWPTQ-------PLKIIV------------PGSQTSATLQPLLPATQYQVRLLAENP--LGM  139 (273)
Q Consensus        98 ~~~~~~-------~~~~~~------------~~~~~~~~~~~l~~~~~y~~~v~a~~~--~g~  139 (273)
                      ......       ......            ......+.|.++.......|.+.|.|.  .|.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~  282 (363)
T 1wio_A          220 ASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK  282 (363)
T ss_dssp             CCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCC
T ss_pred             CCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCe
Confidence            321110       011111            112347888888888889999999998  663

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=97.97  E-value=3.1e-05  Score=55.16  Aligned_cols=121  Identities=21%  Similarity=0.205  Sum_probs=72.9

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC--CCcc----eEEEEeeccEEEEEEeCCCCCCccce
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE--APKN----IRITEESSRSLQISWTAPYSGNTAIT   87 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~--~p~~----~~~~~~~~~~~~l~W~~~~~~~~~~~   87 (273)
                      .+..+.|.|.++..+|.|.|+|.+.|..|.....+.+.+..+|.  .|..    ..........+.|.+.....   +..
T Consensus        58 ~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~---p~p  134 (197)
T 2j8h_A           58 KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK---PDP  134 (197)
T ss_dssp             TTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEE---SCC
T ss_pred             CCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEec---CCC
Confidence            34566899999999999999999999988877777777765443  1111    11222234445555543211   111


Q ss_pred             EEEEEEEeCCCCCCCc-cceEEecCCccEEEecC-CCCCCeEEEEEEEeCCCCC
Q psy6638          88 QYIIQYKSSEEMWPTQ-PLKIIVPGSQTSATLQP-LLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        88 ~y~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-l~~~~~y~~~v~a~~~~g~  139 (273)
                        .+.|...+...... ............+.|.+ +.......|+|.|.|..|.
T Consensus       135 --~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~  186 (197)
T 2j8h_A          135 --VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI  186 (197)
T ss_dssp             --EEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEE
T ss_pred             --cEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCc
Confidence              34555443211111 11222223445677888 8888888999999998774

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=97.97  E-value=5.9e-05  Score=54.11  Aligned_cols=119  Identities=18%  Similarity=0.305  Sum_probs=73.6

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCc--eeEEEEEEecCCCCCcceE-EEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTA--EMTIQLLVQETPEAPKNIR-ITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~--~~~~~~~~~~~P~~p~~~~-~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      ..|.|.++..+|.|.|+|.+.|..|..  ...+.+.+..+|..+.... ........+.|.+.... +. +..  .+.|.
T Consensus        68 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~-p~~--~v~W~  143 (209)
T 1nbq_A           68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQD-GS-PPS--EYTWF  143 (209)
T ss_dssp             TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCS-CB-SCC--EEEEE
T ss_pred             cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCC-CC-CCc--eeEEE
Confidence            479999999999999999999987643  3366677777776543221 12234556777776421 11 121  45565


Q ss_pred             eCCCCCCCccc--------eEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          95 SSEEMWPTQPL--------KIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        95 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ..+........        ..........+.|.++.......|+|.|.|..|..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          144 KDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             ETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             ECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence            54432211100        01111234568888888888888999999988855

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.97  E-value=1.9e-05  Score=49.73  Aligned_cols=44  Identities=27%  Similarity=0.449  Sum_probs=36.6

Q ss_pred             ecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          12 LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      ..++....|.|.++.++|.|.|+|.|.|.  .....+.+.+..+|.
T Consensus        55 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           55 VQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAKVHVISGPS   98 (100)
T ss_dssp             EECSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEEEEEECCSC
T ss_pred             EEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEEEEEeCCCC
Confidence            34677789999999999999999999997  455677888887774

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=97.97  E-value=1.1e-05  Score=61.99  Aligned_cols=39  Identities=26%  Similarity=0.429  Sum_probs=29.8

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcC-CCCceeEEEEEEecCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNY-HGTAEMTIQLLVQETP   56 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~-~g~~~~~~~~~~~~~P   56 (273)
                      .+|.|.++..+|.|.|+|.|.|. .|.......+.+...|
T Consensus        74 ~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~  113 (308)
T 4fom_A           74 ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEP  113 (308)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCC
T ss_pred             eEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeecc
Confidence            47999999999999999999885 4445556666655444

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.96  E-value=1.7e-05  Score=51.53  Aligned_cols=44  Identities=18%  Similarity=0.129  Sum_probs=38.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      .+..+.|.|.++...|.|.|+|.|.|..|.....+.+.+..+|+
T Consensus        75 ~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P~  118 (118)
T 2e7c_A           75 SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAG  118 (118)
T ss_dssp             CSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEECCCC
T ss_pred             CCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEcCCC
Confidence            45567899999999999999999999999888888888887763

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=97.96  E-value=0.00013  Score=53.13  Aligned_cols=118  Identities=17%  Similarity=0.172  Sum_probs=70.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCC-Ccc-----eEEEEeeccEEEEEEeCCCCCCccceEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA-PKN-----IRITEESSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~-p~~-----~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      ..|.|.++...|.|.|+|.+.|..|.......+.+...+.. |..     ..........+.|.+.....   +..  .+
T Consensus        76 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~---p~p--~v  150 (231)
T 3ojm_B           76 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSD---AQP--HI  150 (231)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECS---SCC--EE
T ss_pred             ceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecC---CCC--EE
Confidence            37999999999999999999999888777777777654432 111     11222234556666653211   111  23


Q ss_pred             EEEe----CCCCCCCc--cce--EEe----cCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          92 QYKS----SEEMWPTQ--PLK--IIV----PGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        92 ~~~~----~~~~~~~~--~~~--~~~----~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      .|..    .+......  ...  ...    ......+.|.++.......|+|.|.|..|..
T Consensus       151 ~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  211 (231)
T 3ojm_B          151 QWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA  211 (231)
T ss_dssp             EEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE
Confidence            4433    22111000  000  000    1123468888888888899999999988754

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.96  E-value=4.6e-05  Score=59.16  Aligned_cols=224  Identities=15%  Similarity=0.137  Sum_probs=81.1

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC-------------------CCc-----ce---EEEEeecc
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE-------------------APK-----NI---RITEESSR   70 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~-------------------~p~-----~~---~~~~~~~~   70 (273)
                      ..|.|.++..+|.|.|+|.+.|. |.....+.+.+...|.                   +|.     .+   ........
T Consensus        61 ~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~  139 (334)
T 1ry7_B           61 QRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAAN  139 (334)
T ss_dssp             -----------------------------------------------------------CCCCSCCTTCCCCEEEEETTC
T ss_pred             ceEEEeecccccCEEEEEEEEeC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCC
Confidence            47999999999999999999998 7666666666654331                   111     11   12223455


Q ss_pred             EEEEEEeCCCCCCccceEEEEEEEeCCCCCCCcc--ceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEE
Q psy6638          71 SLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQP--LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQA  148 (273)
Q Consensus        71 ~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~  148 (273)
                      .+.|.+....  . +..  .+.|...+.......  ...........+.|.++.......|+|.+.|..|.......+.+
T Consensus       140 ~v~l~C~~~g--~-p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  214 (334)
T 1ry7_B          140 TVRFRCPAAG--N-PTP--SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV  214 (334)
T ss_dssp             CEEEECCCCC--S-SCC--EEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEE
T ss_pred             cEEEEEEccC--C-CCC--eEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEE
Confidence            6777776431  1 111  355554432211110  01112234457888888888888889999888764322222222


Q ss_pred             EecCCC-CC---CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEE----cCCCCccceeeeeeeEEe---
Q psy6638         149 STLEEA-PN---GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQI----SSGSSLALSSYTLKSVEL---  217 (273)
Q Consensus       149 ~~~~~~-p~---~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~----~~~~~~~~~~~~~~~~~~---  217 (273)
                      ...... |.   ..|....+.    ....+.|........       .-.+.|..    .+..-.............   
T Consensus       215 ~~~~~~~p~~~~~~~~~~~~~----~G~~v~l~C~~~g~p-------~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~  283 (334)
T 1ry7_B          215 LERSPHRPILQAGLPANQTAV----LGSDVEFHCKVYSDA-------QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGA  283 (334)
T ss_dssp             ECCCCSSCBCCTTCSCCEEEE----SSCCEEECCCCBCSS-------CEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSC
T ss_pred             ecCCCCCCceEecCCCceEEe----CCCCEEEEEEEecCC-------CCeEEEEECCcCCCccccCCCCeeEEEeecCcc
Confidence            211110 10   012223332    223455555442211       11344443    111000000000000000   


Q ss_pred             --cCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEE
Q psy6638         218 --DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIAR  258 (273)
Q Consensus       218 --~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~  258 (273)
                        .........|.++.....-.|+..|.|..|....+..+.+.
T Consensus       284 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  326 (334)
T 1ry7_B          284 NTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL  326 (334)
T ss_dssp             SCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEE
T ss_pred             ccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEE
Confidence              01112368888888888888999999998876544334443

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=97.93  E-value=2.6e-05  Score=54.73  Aligned_cols=102  Identities=19%  Similarity=0.178  Sum_probs=61.9

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCc--eeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTA--EMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS   96 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~--~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~   96 (273)
                      .|.|.++.++|.|.|+|.+.|..|..  ...+.+.+..++..|.   +.. ....+.|.+......  +   -.+.|...
T Consensus        62 sL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p~---i~~-~~~~v~L~C~~~g~p--~---p~i~W~~~  132 (176)
T 1hng_A           62 DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPM---IYW-ECSNATLTCEVLEGT--D---VELKLYQG  132 (176)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCCE---EEE-ETTTTEEEEECSSCS--S---CEEEEEET
T ss_pred             cEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCCE---EEe-cCCcEEEEEEecCCC--C---cEEEEEEC
Confidence            49999999999999999999999986  5567777776665553   221 222366666543211  1   23555544


Q ss_pred             CCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          97 EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      +..       .... ..  +.+..+.......|.+.|.|..|.
T Consensus       133 g~~-------l~~~-~~--~~i~~~~~~d~G~Y~C~a~N~~g~  165 (176)
T 1hng_A          133 KEH-------LRSL-RQ--KTMSYQWTNLRAPFKCKAVNRVSQ  165 (176)
T ss_dssp             TEE-------EEEE-SS--SEEEEECSCCSSCEEEEEEETTEE
T ss_pred             CEE-------CCCC-Cc--EEEEEEEccCCeEEEEEEEecCCC
Confidence            321       1111 11  222234455566778889888773

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=97.92  E-value=3.4e-05  Score=52.22  Aligned_cols=44  Identities=20%  Similarity=0.264  Sum_probs=37.2

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK   60 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~   60 (273)
                      ...+|.|.++..+|.|.|+|.+.|. |.....+.+.+..+|.+|.
T Consensus       101 ~~~~L~I~~v~~~DsG~Y~C~~~n~-~~~~~~~~L~V~~~P~~P~  144 (145)
T 1z9m_A          101 HELSISISNVALADEGEYTCSIFTM-PVRTAKSLVTVLGIPQKPI  144 (145)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEECSS-SCEEEEEEEEEECCCC---
T ss_pred             CeEEEEECCCChhhCEEEEEEEEcC-CCceEEEEEEEEeCCCCCc
Confidence            4568999999999999999999999 8888888999998887763

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=97.91  E-value=0.00047  Score=50.07  Aligned_cols=124  Identities=12%  Similarity=0.040  Sum_probs=73.7

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCce--eEEEEEEecCCCCCcce---EEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAE--MTIQLLVQETPEAPKNI---RITEESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~--~~~~~~~~~~P~~p~~~---~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      .|.|.++.++|.|.|+|.+.|..|...  ..+.+.+...+.+|.-.   .........++|.+.....   +..  .+.|
T Consensus        65 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~---~~~--~~~W  139 (218)
T 1uct_A           65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHI---PFD--RFSL  139 (218)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSS---CCS--EEEE
T ss_pred             EEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCC---CCC--EEEE
Confidence            799999999999999999999876433  24566666544333210   0111245567777743211   112  2445


Q ss_pred             EeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC---CCCCCcceEEEe
Q psy6638          94 KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG---MSETGAELQAST  150 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g---~~~~s~~~~~~~  150 (273)
                      ...+.....   ..........+.|.++.......|+|.|.+..+   ++..+..+.+..
T Consensus       140 ~k~g~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  196 (218)
T 1uct_A          140 AKEGELSLP---QHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV  196 (218)
T ss_dssp             EETTCSSCC---SEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             EECCCcccc---cccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEE
Confidence            554432211   111223456788999999999999999987532   334445444443

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=97.90  E-value=8.8e-05  Score=53.38  Aligned_cols=120  Identities=15%  Similarity=0.130  Sum_probs=71.0

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec--------------------CCC----CCcceEEEEee
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE--------------------TPE----APKNIRITEES   68 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~--------------------~P~----~p~~~~~~~~~   68 (273)
                      ..+....|.|.++..+|.|.|+|.+.|..|.....+.+.+..                    .|.    .|...  ....
T Consensus        54 ~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~v~~  131 (212)
T 2r15_A           54 VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV--TIQE  131 (212)
T ss_dssp             EETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEE--EEET
T ss_pred             EeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcE--EEcc
Confidence            345567899999999999999999999888766666554431                    110    12221  2223


Q ss_pred             ccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCcc-ceEEe-cCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          69 SRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQP-LKIIV-PGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        69 ~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      ...+.|.+.....   +..  .+.|...+....... ..... ......+.|.++.......|.+.|.|..|.
T Consensus       132 g~~~~l~C~~~g~---p~p--~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~  199 (212)
T 2r15_A          132 GKALNLTCNVWGD---PPP--EVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS  199 (212)
T ss_dssp             TCCEEEEEEEECS---SCC--EEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCeEEEEEEEcCC---CCc--eEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCc
Confidence            4456666653211   111  245554432111011 11111 123357888899988888999999998874

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=97.89  E-value=3.7e-05  Score=61.13  Aligned_cols=113  Identities=20%  Similarity=0.230  Sum_probs=72.5

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      ..|.|.++..+|.|.|+|.|.|..|.......+.+..+|.   .+.+..  ......+.|.+...  +. +..  .+.|.
T Consensus       258 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~--v~~g~~v~l~C~~~--g~-P~p--~i~W~  330 (384)
T 3kld_A          258 GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIH--VAMEESVFWECKAN--GR-PKP--TYRWL  330 (384)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEE--ECTTCCEEEECEEE--EE-SCC--EEEEE
T ss_pred             cEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceE--ecCCCCEEEEeECC--cc-CCC--eEEEE
Confidence            3799999999999999999999999988888888876664   233322  22344455555432  11 111  24455


Q ss_pred             eCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          95 SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ..+........ ...  ....+.|..+.......|.+.|.|..|..
T Consensus       331 k~g~~l~~~~~-~~~--~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~  373 (384)
T 3kld_A          331 KNGDPLLTRDR-IQI--EQGTLNITIVNLSDAGMYQCVAENKHGVI  373 (384)
T ss_dssp             ETTEECCCBTT-EEE--ETTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             ECCEECCCCcc-EEE--eCCEEEEeecChhhCEEEEEEEEeCCceE
Confidence            44422111111 112  22468888898889999999999998843

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=97.88  E-value=0.00017  Score=51.34  Aligned_cols=119  Identities=13%  Similarity=0.148  Sum_probs=66.8

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCce--eEEEEEEecCCCCCcce---EEEEeeccEEEEEEeCCCCCCccceE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAE--MTIQLLVQETPEAPKNI---RITEESSRSLQISWTAPYSGNTAITQ   88 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~--~~~~~~~~~~P~~p~~~---~~~~~~~~~~~l~W~~~~~~~~~~~~   88 (273)
                      ......|.|.++.++|.|.|+|.+.|..|...  ..+.+.+...+.+|.-.   .........++|.+.....   + . 
T Consensus        54 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~---p-~-  128 (196)
T 2d3v_A           54 PKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLR---F-D-  128 (196)
T ss_dssp             STTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSC---C-S-
T ss_pred             CccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCC---C-C-
Confidence            34567899999999999999999999876433  35666676543333211   0111234556777765322   2 1 


Q ss_pred             EEEEEEeCCCCCCCccce-EEec--CCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          89 YIIQYKSSEEMWPTQPLK-IIVP--GSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        89 y~v~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                       .+.|...+..-...... ....  .....+.|.++.......|.+.|.|..+
T Consensus       129 -~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          129 -RFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             -EEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             -EEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence             34555544321100000 0111  1225788889999999999999998654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=97.88  E-value=7.7e-05  Score=57.33  Aligned_cols=118  Identities=14%  Similarity=0.165  Sum_probs=65.9

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC-----------CCcceEEEEeeccEEEEEEeCCCCCCcc
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE-----------APKNIRITEESSRSLQISWTAPYSGNTA   85 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~-----------~p~~~~~~~~~~~~~~l~W~~~~~~~~~   85 (273)
                      ...|.|.++...|.|.|+|.+.|..|.....+.+.+...|.           .-..+.+.. ......+.+..... . +
T Consensus        60 ~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c-~~~~~~l~c~~~~~-~-p  136 (317)
T 2y25_A           60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS-TAEGIQLYSFVTYY-V-E  136 (317)
T ss_dssp             CEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEE-CSSEEEEEEEBSSC-C-S
T ss_pred             eEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEe-eccccEEEEEeccC-C-C
Confidence            36899999999999999999999988776665554433221           001111221 12222333322110 0 1


Q ss_pred             ceEEEEEEEeCCCCCCCcc-ceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          86 ITQYIIQYKSSEEMWPTQP-LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        86 ~~~y~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      .  ..+.|...+....... ...........+.|.++.......|++.|.|..|.
T Consensus       137 ~--~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  189 (317)
T 2y25_A          137 D--LKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG  189 (317)
T ss_dssp             S--CEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred             C--cEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCce
Confidence            1  1345544433211111 12222233445888889888889999999997763

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=97.87  E-value=0.00016  Score=56.23  Aligned_cols=118  Identities=19%  Similarity=0.102  Sum_probs=75.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCC--c-ceEEEEeeccEEEEEEeCCC---CCCccceEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP--K-NIRITEESSRSLQISWTAPY---SGNTAITQYIIQ   92 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p--~-~~~~~~~~~~~~~l~W~~~~---~~~~~~~~y~v~   92 (273)
                      .|.|.++...|.|.|+|.+.|..|.....+.+.+...|..+  . ...........+.|.+....   .+....   .+.
T Consensus        82 ~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~---~v~  158 (339)
T 3o4o_C           82 ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV---KIQ  158 (339)
T ss_dssp             EEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCC---CBC
T ss_pred             eEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCc---eEE
Confidence            79999999999999999999998877778888887766432  1 11122335667888887321   111111   234


Q ss_pred             EEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          93 YKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      |...+..................+.|.++.......|+|.|.|..|.
T Consensus       159 W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  205 (339)
T 3o4o_C          159 WYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEG  205 (339)
T ss_dssp             CEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTT
T ss_pred             EecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCC
Confidence            44443322211112222223357889999999999999999997763

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.87  E-value=0.00042  Score=48.93  Aligned_cols=123  Identities=12%  Similarity=0.004  Sum_probs=72.5

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCc--eeEEEEEEecCCCCCcceE---EEEeeccEEEEEEeCCCCCCccceEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTA--EMTIQLLVQETPEAPKNIR---ITEESSRSLQISWTAPYSGNTAITQY   89 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~--~~~~~~~~~~~P~~p~~~~---~~~~~~~~~~l~W~~~~~~~~~~~~y   89 (273)
                      .....|.|.++.++|.|.|+|.+.|..|..  ...+.+.+...+.+|.-..   ........++|.+.....   +. . 
T Consensus        54 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~---~~-~-  128 (188)
T 1oll_A           54 INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA---TS-M-  128 (188)
T ss_dssp             CCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSSS---CS-E-
T ss_pred             cceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCCC---CC-E-
Confidence            346689999999999999999998865433  3356666665433332110   112345678888875421   12 2 


Q ss_pred             EEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCC-CCCCCCcce
Q psy6638          90 IIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL-GMSETGAEL  146 (273)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~-g~~~~s~~~  146 (273)
                       +.|...+....   ...........+.|.++.......|++.|.|.. .++..|.++
T Consensus       129 -~~w~k~g~~~~---~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~  182 (188)
T 1oll_A          129 -FLLLKEGRSSH---VQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPV  182 (188)
T ss_dssp             -EEEEEESSSCE---EEEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCE
T ss_pred             -EEEEECCcccc---ccccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcE
Confidence             34444332211   011122345678888888888888898887753 233334443

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=97.86  E-value=2e-05  Score=56.61  Aligned_cols=65  Identities=20%  Similarity=0.228  Sum_probs=45.5

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceE-EEEeeccEEEEEEeC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR-ITEESSRSLQISWTA   78 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~-~~~~~~~~~~l~W~~   78 (273)
                      .+....|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|..+.-.. ........++|.+..
T Consensus        50 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~  115 (202)
T 1vca_A           50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSV  115 (202)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEE
T ss_pred             cCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEE
Confidence            34456799999999999999999999988777788888887776443111 111234456666653

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=97.86  E-value=0.00067  Score=51.86  Aligned_cols=119  Identities=13%  Similarity=0.120  Sum_probs=69.2

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec------------CCCCCcce--EEEEeeccEEEEEEeCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE------------TPEAPKNI--RITEESSRSLQISWTAP   79 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~------------~P~~p~~~--~~~~~~~~~~~l~W~~~   79 (273)
                      ++....|.|.++..+|.|.|+|.+.|..|... +..+.+..            +|..+...  .........+.|.+...
T Consensus        54 ~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~  132 (312)
T 2y23_A           54 KGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAE  132 (312)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEES
T ss_pred             eCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEE
Confidence            56677999999999999999999999988554 44444432            44433321  22223455677777653


Q ss_pred             CCCCccceEEEEEEEeCCCCCCC-ccceEEec--CCccEEEecCCCCCCeEEEEEEEeCCC
Q psy6638          80 YSGNTAITQYIIQYKSSEEMWPT-QPLKIIVP--GSQTSATLQPLLPATQYQVRLLAENPL  137 (273)
Q Consensus        80 ~~~~~~~~~y~v~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~l~~~~~y~~~v~a~~~~  137 (273)
                      .. . +.  ..+.|...+..... ........  .....+.|.++.......|++.+.+..
T Consensus       133 ~~-~-p~--~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  189 (312)
T 2y23_A          133 KL-S-GN--AKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK  189 (312)
T ss_dssp             CC-C-SS--CEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSS
T ss_pred             eC-C-CC--CEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCC
Confidence            11 1 11  13445443321110 01111111  223458888998888888899887543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=97.85  E-value=0.00015  Score=53.26  Aligned_cols=118  Identities=17%  Similarity=0.144  Sum_probs=69.6

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC-CCcceE-----EEEeeccEEEEEEeCCCCCCccceEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE-APKNIR-----ITEESSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~-~p~~~~-----~~~~~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      ..|.|.++...|.|.|+|.+.|..|.......+.+...+. +|....     ........+.|.+.....   +..  .+
T Consensus        72 ~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~---p~p--~v  146 (241)
T 3grw_A           72 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSD---AQP--HI  146 (241)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECS---SCC--EE
T ss_pred             eEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecC---CCC--EE
Confidence            3799999999999999999999988877777777765432 222110     111234456666654211   111  34


Q ss_pred             EEEe----CCCCCCCccc--eEE----e---cCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          92 QYKS----SEEMWPTQPL--KII----V---PGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        92 ~~~~----~~~~~~~~~~--~~~----~---~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      .|..    .+........  ...    .   ......+.|.++.......|+|.|.|..|..
T Consensus       147 ~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~  208 (241)
T 3grw_A          147 QWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA  208 (241)
T ss_dssp             EEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             EEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceE
Confidence            4443    2211100000  000    0   0123457888888888899999999988744

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=97.84  E-value=0.00058  Score=49.16  Aligned_cols=122  Identities=20%  Similarity=0.165  Sum_probs=74.3

Q ss_pred             CCcEEEEEEeeee-eCCCEEEEEEEEcCCCCceeEEEEEEecCCC----CCcceE----EEEeeccEEEEEEeCCCCCCc
Q psy6638          14 DGMISELGIANVL-RQDSGTLSCLATNYHGTAEMTIQLLVQETPE----APKNIR----ITEESSRSLQISWTAPYSGNT   84 (273)
Q Consensus        14 ~~~~~~l~i~~~~-~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~----~p~~~~----~~~~~~~~~~l~W~~~~~~~~   84 (273)
                      ++..+.|.|.++. ..|.|.|+|.+.|..|.....+.+.+...+.    .|.-..    ........+.|.+....  ..
T Consensus        59 ~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g--~p  136 (212)
T 2yd6_A           59 DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASG--NP  136 (212)
T ss_dssp             GGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEEC--SS
T ss_pred             CCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecC--CC
Confidence            3456789999994 9999999999999998877777887765432    222110    11123445666665421  11


Q ss_pred             cceEEEEEEEeCCCCCCCc----cceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          85 AITQYIIQYKSSEEMWPTQ----PLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        85 ~~~~y~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ..   .+.|...+......    ............+.|.++.......|.|.|.|..|..
T Consensus       137 ~p---~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~  193 (212)
T 2yd6_A          137 DP---EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR  193 (212)
T ss_dssp             CC---EEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CC---eEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCcc
Confidence            11   25555543211100    0111112234678888999888999999999998854

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=97.84  E-value=4.3e-05  Score=50.18  Aligned_cols=52  Identities=21%  Similarity=0.359  Sum_probs=39.2

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA   58 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~   58 (273)
                      .||.+..   ......+|.|.+++.+|.|.|+|.+.|. |.....+.+.+..+|..
T Consensus        54 ~r~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~-g~~~~~~~l~V~~~P~~  105 (124)
T 3rbg_A           54 SKYQLLH---HSANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMKG  105 (124)
T ss_dssp             SCCEEEE---EETTEEEEEESSCCGGGCEEEEEEEESS-SEEEEEEEEEEECC---
T ss_pred             CcEEEEe---CCCCEEEEEECCCChHHCEEEEEEEEcC-CCCcEEEEEEEEeCCCC
Confidence            4555543   1334568999999999999999999999 88888888888877753

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=97.83  E-value=0.00084  Score=55.57  Aligned_cols=210  Identities=9%  Similarity=0.066  Sum_probs=105.4

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCC---CcceEEEEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA---PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~---p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      ....|.|.++..+|.|.|+|.+.|  |. ...+.+.+..+|.+   +...  .......+.|.+.....   +  ...+.
T Consensus        78 ~~~~L~I~~~~~~D~G~Y~C~a~n--g~-~~~~~l~V~~p~~~~~~~~~~--~v~~G~~v~l~C~~~~~---~--~~~v~  147 (524)
T 2ec8_A           78 KQNEWITEKAEATNTGKYTCTNKH--GL-SNSIYVFVRDPAKLFLVDRSL--YGKEDNDTLVRCPLTDP---E--VTNYS  147 (524)
T ss_dssp             CSSEEEESSCCSTTCEEEEEEETT--SC-EEEEEEECCCSSCSBCCCCCC--CEETTSCEEECCCBSCC---C--CSCEE
T ss_pred             ccceEEEcccchhhCEEEEEeecC--Cc-ceEEEEEECCCCcccccccce--EEEcCCeEEEECcCCCC---c--cceEE
Confidence            345899999999999999999999  53 55666776655532   2222  22245667777765421   1  12355


Q ss_pred             EEe-CCCCCCCccceEEecCCccEEEecCCCCCCeE-EEEEEEeCCCCCCCCCcceEEEecC--CCCC---CCCeeEEec
Q psy6638          93 YKS-SEEMWPTQPLKIIVPGSQTSATLQPLLPATQY-QVRLLAENPLGMSETGAELQASTLE--EAPN---GAPREVTSD  165 (273)
Q Consensus        93 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y-~~~v~a~~~~g~~~~s~~~~~~~~~--~~p~---~~p~~~~~~  165 (273)
                      |.. .+.... ........ ....+.|.++...... .|+|.|.|..|... +..+.+....  ..|+   ..|....+.
T Consensus       148 W~~~~g~~l~-~~~~~~~~-~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~-s~~~~l~V~~~~~~~p~i~~~~~~~~v~  224 (524)
T 2ec8_A          148 LKGCQGKPLP-KDLRFIPD-PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVL-SEKFILKVRPAFKAVPVVSVSKASYLLR  224 (524)
T ss_dssp             EECSSSCCCC-SSCEEEEE-TTTEEEEESCCGGGTTCEEEEEEC----CCC-CCCEECCEECCCCSCCEEECSCSEEEEE
T ss_pred             EEccCCcCcC-CCCceeEC-CCccEEEeccchhhCCceEEEEEEECCceEE-EEEEEEEEEeCCCCCCcEEecCCcceEE
Confidence            543 332211 11122222 2346788888888888 89999988755332 2223332221  1111   112222222


Q ss_pred             CCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCC-ccceeeeeeeEEe--cCCcccEEEcCCCCccceEEEEEEE
Q psy6638         166 PGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSS-LALSSYTLKSVEL--DNQYEGELRIPGLTPYTKYAIVVRG  242 (273)
Q Consensus       166 ~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~~~Y~~~v~a  242 (273)
                          ....+.|........      .-..+.|...+... ..... . .....  .........|.++.....-.|+..|
T Consensus       225 ----~G~~v~L~C~~~g~p------~p~~i~W~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a  292 (524)
T 2ec8_A          225 ----EGEEFTVTCTIKDVS------SSVYSTWKRENSQTKLQEKY-N-SWHHGDFNYERQATLTISSARVNDSGVFMCYA  292 (524)
T ss_dssp             ----TTSCEEEEEEEEESS------TTCEEEEEETTCSCCCCEEE-E-EEECSSSCEEEEEEEEESSCCTTTCEEEEEEE
T ss_pred             ----cCCcEEEEEEEecCC------CcEEEEEEeCCCCCcccccc-c-cccccCCccceEEEEEECCCCHHHCEEEEEEE
Confidence                233444444432110      01134454444320 00000 0 00000  0111356788888888888889999


Q ss_pred             ecCCCcCC
Q psy6638         243 YNSVGKGP  250 (273)
Q Consensus       243 ~n~~g~~~  250 (273)
                      .|..|...
T Consensus       293 ~n~~g~~~  300 (524)
T 2ec8_A          293 NNTFGSAN  300 (524)
T ss_dssp             ECSSCEEE
T ss_pred             EecCCceE
Confidence            98877643

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=97.83  E-value=7.7e-05  Score=52.59  Aligned_cols=116  Identities=22%  Similarity=0.234  Sum_probs=68.4

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCcee--EEEEEEecCCCC---CcceEEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEM--TIQLLVQETPEA---PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~--~~~~~~~~~P~~---p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      .|.|.++...|.|.|+|.+.+..+....  .+.+.+..+|..   +............+.|.+.....   +..  .+.|
T Consensus        58 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~---p~~--~v~W  132 (189)
T 2v5t_A           58 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGS---PEP--AISW  132 (189)
T ss_dssp             CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEE---SCC--EEEE
T ss_pred             CEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccC---CCC--eEEE
Confidence            5999999999999999999998755432  444555544431   11111222234456665553211   111  2455


Q ss_pred             EeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          94 KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ...+...... ...........+.|.++.......|++.|.|..|..
T Consensus       133 ~~~g~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  178 (189)
T 2v5t_A          133 FRNGKLIEEN-EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGED  178 (189)
T ss_dssp             EETTEECCCS-SSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             EECCEECcCC-CcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCce
Confidence            5443221111 122233345678899998888899999999987743

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=97.83  E-value=0.0003  Score=52.34  Aligned_cols=115  Identities=14%  Similarity=0.033  Sum_probs=73.6

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceE---EEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR---ITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~---~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      ..|.|.++..+|.|.|+|.+.|..+.....+.+.+...+.+|.-..   ........+.|.+........+...+.+.|.
T Consensus       131 ~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~  210 (262)
T 3rjd_A          131 SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFY  210 (262)
T ss_dssp             CCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEE
T ss_pred             CeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEE
Confidence            4699999999999999999999987766777777776543332110   1122355677777754222112334455555


Q ss_pred             eCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          95 SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      ..+..       .........+.|.++.......|.+.|.|..|.
T Consensus       211 ~~~~~-------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~  248 (262)
T 3rjd_A          211 MGSKT-------LRGRNTSSEYQILTARREDSGLYWCEAATEDGN  248 (262)
T ss_dssp             ETTEE-------EEEEESCCEEEESSCCGGGCEEEEEEEEETTSS
T ss_pred             eCCcE-------ecccCCCceEEEEEechhhCeEEEEEEEcccCc
Confidence            54321       111224457888889998889999999998884

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=97.83  E-value=0.00017  Score=52.56  Aligned_cols=60  Identities=17%  Similarity=0.170  Sum_probs=40.4

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEe
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWT   77 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~   77 (273)
                      ...|.|.++..+|.|.|+|.|.|..|.....+.+.+..++..+.. .........+.+...
T Consensus        82 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~-~~~~~~g~~v~l~c~  141 (226)
T 4f80_A           82 KAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHV-DVKGYKDGGIHLECR  141 (226)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEE-EEEEEETTEEEEEEE
T ss_pred             eEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceecccc-eeeeccCCceeeEEE
Confidence            568999999999999999999998877666655555444433322 223334555555554

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=97.82  E-value=6.4e-05  Score=59.62  Aligned_cols=106  Identities=14%  Similarity=0.166  Sum_probs=72.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEe
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS   95 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~   95 (273)
                      .|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.   .|...  .......+.|.+.....+  ..   .+.|..
T Consensus       271 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~--~v~~g~~~~l~C~~~g~p--~p---~i~W~~  343 (388)
T 2v5m_A          271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ--TVDFGRPAVFTCQYTGNP--IK---TVSWMK  343 (388)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEE--EECTTSCEEEEEEEEEEC--CC---EEEEEE
T ss_pred             EEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcE--EecCCCCEEEEEEecccc--CC---eEEEEE
Confidence            799999999999999999999999887788888876553   22222  222345566666532111  11   355555


Q ss_pred             CCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          96 SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      .+..         +......+.|.++.......|+|.|.|..|..
T Consensus       344 ~g~~---------i~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  379 (388)
T 2v5m_A          344 DGKA---------IGHSESVLRIESVKKEDKGMYQCFVRNDRESA  379 (388)
T ss_dssp             TTEE---------CSCCSSEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             CCEE---------CccCCCEEEEecCChhhCEEEEEEEEcCCCcE
Confidence            4321         11234578889999989999999999998743

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=97.81  E-value=9.4e-05  Score=52.28  Aligned_cols=116  Identities=18%  Similarity=0.135  Sum_probs=69.1

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCC-CceeEEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHG-TAEMTIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g-~~~~~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      +....|.|.++..+|.|.|+|.+.|..| .....+.+.+..+|.   .|...  .......+.|.+.....  ...   .
T Consensus        59 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~--~~~~g~~~~l~C~~~g~--p~~---~  131 (191)
T 1epf_A           59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQ--EFKEGEDAVIVCDVVSS--LPP---T  131 (191)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSE--ECCTTSCEEECCEEECS--SCC---E
T ss_pred             CCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcE--eecCCCeEEEEEEECCC--CCC---E
Confidence            4567899999999999999999999884 344466666665553   23222  12234455555543211  111   2


Q ss_pred             EEEEeCCCCCCC-ccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          91 IQYKSSEEMWPT-QPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        91 v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      +.|...+..... ........ ....+.|.++.......|.+.|.|..|
T Consensus       132 v~W~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~~  179 (191)
T 1epf_A          132 IIWKHKGRDVILKKDVRFIVL-SNNYLQIRGIKKTDEGTYRCEGRILAR  179 (191)
T ss_dssp             EEEEETTEEGGGGCCTTEEEC-TTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             EEEEECCEEeeccCCceEEEe-cCCeEEECCCChhhCEEEEEEEEEecc
Confidence            555544321100 00011111 233688888988888899999998764

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=97.81  E-value=7.7e-05  Score=47.36  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=34.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      ....|.|.++..+|.|.|+|.+.| .|.....+.+.+..+|
T Consensus        69 ~~~~L~I~~v~~~D~G~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           69 HELSISVSDVSLSDEGQYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             CcEEEEECCCChhHCeEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            466899999999999999999999 7877778888887665

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=97.80  E-value=3.8e-05  Score=49.91  Aligned_cols=42  Identities=24%  Similarity=0.161  Sum_probs=36.6

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      ....|.|.++.+.|.|.|+|.|.|..|.....+.+.+...|.
T Consensus        63 ~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~  104 (118)
T 1wwc_A           63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF  104 (118)
T ss_dssp             EEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCCC
T ss_pred             ccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEccCCC
Confidence            355899999999999999999999999988888887776664

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=97.78  E-value=0.002  Score=53.33  Aligned_cols=119  Identities=12%  Similarity=0.061  Sum_probs=63.6

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe-cCCCCCcceE----EEEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ-ETPEAPKNIR----ITEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~-~~P~~p~~~~----~~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      +.|.|.++..+|.|.|+|.|.|..|.....+.+... ..+.+|.-..    ........+.|.+........++   .+.
T Consensus       178 s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~---~v~  254 (523)
T 2rcj_C          178 SYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPV---TVS  254 (523)
T ss_pred             EEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCe---EEE
Confidence            469999999999999999999998876655543321 1222222110    01123455666665321101111   355


Q ss_pred             EEeCCCCCCCcc-ceEEec-C---CccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          93 YKSSEEMWPTQP-LKIIVP-G---SQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        93 ~~~~~~~~~~~~-~~~~~~-~---~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      |...+....... ...... +   ....+.|....... ..|.|.|.|..|..
T Consensus       255 W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~  306 (523)
T 2rcj_C          255 WNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  306 (523)
T ss_pred             EecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCc
Confidence            554432210000 000000 0   02356777777777 88999999988753

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=97.78  E-value=0.0011  Score=46.90  Aligned_cols=112  Identities=21%  Similarity=0.215  Sum_probs=68.0

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      ...|.|.++...|.|.|+|.+.|..|.... .+.+.+..+|.   .|...  .......+.|.+.....+ .+.   .+.
T Consensus        67 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~--~~~~g~~~~l~C~~~g~p-~p~---~v~  140 (195)
T 2c5d_C           67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDR--TVAANTPFNLSCQAQGPP-EPV---DLL  140 (195)
T ss_dssp             EEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCE--EECTTCCEEEEEEEECSS-CCC---EEE
T ss_pred             ccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcE--EEcCCCEEEEEeECCCCC-CCC---EEE
Confidence            468999999999999999999998776544 47777776663   23332  222345566666542111 111   355


Q ss_pred             EEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          93 YKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      |...+.........    .....+.|.++..  ...|++.|.|..|..
T Consensus       141 W~~~~~~~~~~~~~----~~~~~L~i~~~~d--~G~Y~C~a~N~~g~~  182 (195)
T 2c5d_C          141 WLQDAVPLATAPGH----GPQRSLHVPGLNK--TSSFSCEAHNAKGVT  182 (195)
T ss_dssp             EEESSCBSSSSTTS----SCCEEEEECCCSS--CEEEEEEEEETTEEE
T ss_pred             EEECCEeccCCCCc----CCCCeEEEccccc--CceEEEEEEcCCCce
Confidence            55554322111110    2345677777763  468888899987743

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=97.78  E-value=0.0013  Score=52.95  Aligned_cols=41  Identities=7%  Similarity=0.096  Sum_probs=30.7

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      ...|.|.++.++|.|.|+|.|.|..|.....+.+.+..+|.
T Consensus       102 ~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  142 (423)
T 3qs7_E          102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLL  142 (423)
T ss_dssp             EEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC----
T ss_pred             EEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCcc
Confidence            34699999999999999999999999877777777765543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=97.78  E-value=0.00026  Score=53.60  Aligned_cols=117  Identities=21%  Similarity=0.217  Sum_probs=73.8

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCcee--EEEEEEecCCCCCcce---EEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEM--TIQLLVQETPEAPKNI---RITEESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~--~~~~~~~~~P~~p~~~---~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      .|.|.++...|.|.|+|.+.|..+....  .+.+.+..+|......   .........+.|.+.....   +..  .+.|
T Consensus       154 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~---p~p--~v~W  228 (291)
T 2wim_A          154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGS---PEP--AISW  228 (291)
T ss_dssp             CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCB---SCC--EEEE
T ss_pred             CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecC---CCC--eEEE
Confidence            6999999999999999999998765433  4556666666532211   1222345667888775321   221  2555


Q ss_pred             EeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCC
Q psy6638          94 KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE  141 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~  141 (273)
                      ...+...... ...........+.|.++.......|++.|.|..|...
T Consensus       229 ~~~g~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  275 (291)
T 2wim_A          229 FRNGKLIEEN-EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDE  275 (291)
T ss_dssp             EETTEECCCT-TTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEE
T ss_pred             EECCEECcCC-ccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCcee
Confidence            5544321111 1122333456788999999899999999999988543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=97.77  E-value=0.00031  Score=53.94  Aligned_cols=40  Identities=25%  Similarity=0.444  Sum_probs=29.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEEecCCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~~~~P~   57 (273)
                      .+|.|.++..+|.|.|+|.+.+ ..|.....+.+.+...|.
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~  119 (313)
T 4fqp_A           79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQ  119 (313)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCE
T ss_pred             eEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCc
Confidence            4699999999999999999865 344444566665555553

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=97.76  E-value=0.00011  Score=46.73  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=33.4

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      ...|.|.++.++|.|.|+|.|.|..|.....+.|.|.
T Consensus        71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eEEEEEecCCCccCEEEEEEEecCCCceEEEEEEEEe
Confidence            5689999999999999999999999998888887764

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=97.76  E-value=2.9e-05  Score=50.87  Aligned_cols=44  Identities=20%  Similarity=0.220  Sum_probs=38.9

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK   60 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~   60 (273)
                      ...|.|.++.+.|.|.|+|.|.|.+|.....+.+.+...|.+..
T Consensus        62 ~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~~~P~~~~  105 (126)
T 1he7_A           62 HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFN  105 (126)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTTSCC
T ss_pred             ceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEEEEEcCCCCCC
Confidence            46899999999999999999999999998888888888886533

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=97.75  E-value=4.6e-05  Score=53.95  Aligned_cols=109  Identities=10%  Similarity=0.103  Sum_probs=67.5

Q ss_pred             EEEEEEee-eeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc-------------------------ceEEE-Eeec
Q psy6638          17 ISELGIAN-VLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK-------------------------NIRIT-EESS   69 (273)
Q Consensus        17 ~~~l~i~~-~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~-------------------------~~~~~-~~~~   69 (273)
                      ..+|.|.+ +..+|.|.|+|.|.|..|.......+.+...+.+..                         ...+. ....
T Consensus        43 ~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  122 (186)
T 1jbj_A           43 DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD  122 (186)
T ss_dssp             CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSS
T ss_pred             CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCC
Confidence            34799999 999999999999999988855554444432221110                         00001 1145


Q ss_pred             cEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          70 RSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        70 ~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      ..+.|.+..|.    +    .+.|...+....      ........+.|.++.+.....|.+.|.|..|.
T Consensus       123 ~~v~l~C~~p~----p----~i~W~k~g~~i~------~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          123 GSVLLTCGLTD----K----TIKWLKDGSIIS------PLNATKNTWNLGNNAKDPRGTYQCQGAKETSN  178 (186)
T ss_dssp             CEEEEECSSSC----S----CEEEEETTEECC------CSSCCSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred             CeEEEEeeCCC----C----eEEEEECCEECc------ccCCCcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence            67778777631    1    245555443211      01113456777888999999999999998763

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=97.75  E-value=6.6e-05  Score=47.01  Aligned_cols=42  Identities=31%  Similarity=0.411  Sum_probs=35.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQET   55 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~   55 (273)
                      .+..+.|.|.++...|.|.|+|.|.|..|.....+.+.+...
T Consensus        58 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           58 EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             TTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEEec
Confidence            344568999999999999999999999999888888877654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=97.75  E-value=6.2e-05  Score=47.01  Aligned_cols=42  Identities=29%  Similarity=0.408  Sum_probs=35.6

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      .++..++|.|.++.++|.|.|+|.|.|..|.....+.+.+.+
T Consensus        57 ~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           57 AEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG   98 (99)
T ss_dssp             CGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEEEEC
Confidence            355566899999999999999999999999888877777653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=97.74  E-value=8.7e-05  Score=53.36  Aligned_cols=116  Identities=13%  Similarity=-0.004  Sum_probs=68.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      ..|.|.++..+|.|.|+|.+.|...  ...+.+.+..+|.   .|. .  .......+.|.+.....  .+.  ..+.|.
T Consensus        54 ~~L~i~~v~~~D~G~Y~C~a~n~~~--s~~~~l~V~~~p~~~~~~~-~--~v~~G~~v~L~C~~~~~--~p~--~~v~W~  124 (204)
T 3sgj_C           54 SSYFIDAATVDDSGEYRCQTQLSTL--SDPVQLEVHIGWLLLQAPR-W--VFKEEDPIHLRCHSWKN--TAL--HKVTYL  124 (204)
T ss_dssp             SEEEESSCCGGGCEEEEEEETTSBC--CCCEEEEEECSSEEEECSC-S--EEETTCCEEEEEEEGGG--CCC--EEEEEE
T ss_pred             cEEEEecccccCCEEEEEEeCCCcc--cccEEEEEecCceEecCCc-e--eEeCCCcEEEEEEecCC--CCC--ceEEEE
Confidence            6899999999999999999987433  3355555654442   111 1  12235566777664211  121  234555


Q ss_pred             eCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEe
Q psy6638          95 SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST  150 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~  150 (273)
                      ..+..       .........+.|.++.......|++.|.|..+ +..+..+.+..
T Consensus       125 k~g~~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~-~~~s~~~~l~V  172 (204)
T 3sgj_C          125 QNGKG-------RKYFHHNSDFYIPKATLKDSGSYFCRGLVGSK-NVSSETVQITI  172 (204)
T ss_dssp             ETTEE-------EEEEEECCCEEESSCCGGGCEEEEEEEEETTE-EEECCCEEEEE
T ss_pred             ECCcE-------eecccCCceEEECcCCcccCEEEEEEEEeCCC-ceecCcEEEEE
Confidence            44321       11112345688888998899999999998533 22333344433

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.74  E-value=5.7e-05  Score=48.90  Aligned_cols=39  Identities=18%  Similarity=0.146  Sum_probs=34.9

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQET   55 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~   55 (273)
                      .+.|.|.++.++|.|.|+|.+.|..|.....+.|.|..+
T Consensus        79 ~~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           79 TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             EEEEEESSCCTTTCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             eEEEEEeeCChhhCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            578999999999999999999999998888888877653

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=97.73  E-value=3.3e-05  Score=61.56  Aligned_cols=114  Identities=22%  Similarity=0.250  Sum_probs=72.5

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      ..|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.   .|....+.  ....+.|.+.....+  ..   .+.|.
T Consensus       275 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~--~g~~~~l~C~~~g~p--~p---~v~W~  347 (404)
T 3p3y_A          275 KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILA--PGEDGRLVCRANGNP--KP---TVQWM  347 (404)
T ss_dssp             TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEEC--TTCCEEEECEEEEES--CC---EEEEE
T ss_pred             ceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceee--cCCcEEEEEEccccC--CC---ceEEE
Confidence            4799999999999999999999999988888888877663   33333222  344455555432111  11   25555


Q ss_pred             eCCCCCCCc--cceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          95 SSEEMWPTQ--PLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        95 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ..+......  ......  ....+.|.++.......|+|.|.|..|..
T Consensus       348 ~~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  393 (404)
T 3p3y_A          348 VNGEPLQSAPPNPNREV--AGDTIIFRDTQISSRAVYQCNTSNEHGYL  393 (404)
T ss_dssp             ETTEEGGGSCCCTTEEE--ETTEEEESSCCSSCCCEEEEEEEETTEEE
T ss_pred             ECCEecCCCCCCceEEe--cCCEEEEeecCHHHCEEEEEEEEeCCCcE
Confidence            443211000  001111  23478888999888999999999988744

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=97.73  E-value=5.9e-05  Score=47.54  Aligned_cols=43  Identities=30%  Similarity=0.342  Sum_probs=37.0

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQET   55 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~   55 (273)
                      .++....|.|.++..+|.|.|+|.|.|..|.....+.+.+.+.
T Consensus        59 ~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           59 NTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             EETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             ECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEECC
Confidence            3456678999999999999999999999999888888877654

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=97.73  E-value=0.00019  Score=55.57  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=32.7

Q ss_pred             EEEEEEeeeeeCCCEEEEEE-EEcCCCCceeEEEEEEecCCC
Q psy6638          17 ISELGIANVLRQDSGTLSCL-ATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~-a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      ..+|.|.++..+|.|.|+|. +.+..|.....+.+.+..+|.
T Consensus        91 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~  132 (331)
T 3u83_A           91 DGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPT  132 (331)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCE
T ss_pred             CceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCc
Confidence            34699999999999999998 555667666677888877664

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.73  E-value=0.0002  Score=55.51  Aligned_cols=120  Identities=18%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC-CCcc-----eEEEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE-APKN-----IRITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~-~p~~-----~~~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      ...|.|.++..+|.|.|+|.+.|..|.....+.+.+...+. +|..     ..........+.|.+....  . +..  .
T Consensus       179 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g--~-p~p--~  253 (334)
T 1ry7_B          179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYS--D-AQP--H  253 (334)
T ss_dssp             TTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBC--S-SCE--E
T ss_pred             eEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEec--C-CCC--e
Confidence            44799999999999999999999998887787787765332 2211     1122234555677766421  1 121  3


Q ss_pred             EEEEe----CCCCCCCccc--eEEe--------cCCccEEEecCCCCCCeEEEEEEEeCCCCCCC
Q psy6638          91 IQYKS----SEEMWPTQPL--KIIV--------PGSQTSATLQPLLPATQYQVRLLAENPLGMSE  141 (273)
Q Consensus        91 v~~~~----~~~~~~~~~~--~~~~--------~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~  141 (273)
                      +.|..    .+........  ....        ......+.|.++.......|+|.|.|..|...
T Consensus       254 v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  318 (334)
T 1ry7_B          254 IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSH  318 (334)
T ss_dssp             EEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEE
T ss_pred             EEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEE
Confidence            45544    2211100000  0000        01123688889988888899999999988543

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=97.73  E-value=0.00081  Score=53.33  Aligned_cols=205  Identities=15%  Similarity=0.145  Sum_probs=103.4

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCcee---EEEEEEe--c-----CCC----CCcceEEEEeeccEEEEEEeCCCCCCc
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEM---TIQLLVQ--E-----TPE----APKNIRITEESSRSLQISWTAPYSGNT   84 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~---~~~~~~~--~-----~P~----~p~~~~~~~~~~~~~~l~W~~~~~~~~   84 (273)
                      .|.|.++.++|.|.|+|.|.|..|....   ...+.+.  .     .|.    .|..+  .......+.|.+.....   
T Consensus       158 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~--~~~~G~~v~l~C~~~g~---  232 (384)
T 3kld_A          158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV--PAEKGTTVKLECFALGN---  232 (384)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEE--EEETTSCEEEEEEEEEE---
T ss_pred             cEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCce--EecCCCcEEEEEEEeec---
Confidence            6999999999999999999998876432   1112111  0     110    12221  22234556666653211   


Q ss_pred             cceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEEe
Q psy6638          85 AITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTS  164 (273)
Q Consensus        85 ~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~~  164 (273)
                      +..  .+.|...++......  .........+.|.++.......|++.|.|..|.......+.+...+... ..+.+..+
T Consensus       233 P~p--~i~W~k~~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~-~~~~~~~v  307 (384)
T 3kld_A          233 PVP--TILWRRADGKPIARK--ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV-QIINDIHV  307 (384)
T ss_dssp             SCC--EEEEEETTCCCCCTT--CEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEE-ECCCCEEE
T ss_pred             CCC--cEEEEeCCCcccccc--ceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccc-cCCCceEe
Confidence            111  345554322111011  1122234578899999999999999999988854322323332211100 11223333


Q ss_pred             cCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEec
Q psy6638         165 DPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYN  244 (273)
Q Consensus       165 ~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n  244 (273)
                      ..    ...+.|.......+       .-.+.|...+..-.....     ....   .....|.++.....-.|+..|.|
T Consensus       308 ~~----g~~v~l~C~~~g~P-------~p~i~W~k~g~~l~~~~~-----~~~~---~~~L~i~~v~~~D~G~Y~C~A~N  368 (384)
T 3kld_A          308 AM----EESVFWECKANGRP-------KPTYRWLKNGDPLLTRDR-----IQIE---QGTLNITIVNLSDAGMYQCVAEN  368 (384)
T ss_dssp             CT----TCCEEEECEEEEES-------CCEEEEEETTEECCCBTT-----EEEE---TTEEEESSCCGGGCEEEEEEEEE
T ss_pred             cC----CCCEEEEeECCccC-------CCeEEEEECCEECCCCcc-----EEEe---CCEEEEeecChhhCEEEEEEEEe
Confidence            22    23333333321110       012344433321000000     0011   23678888888888899999999


Q ss_pred             CCCcCCCC
Q psy6638         245 SVGKGPFS  252 (273)
Q Consensus       245 ~~g~~~~s  252 (273)
                      ..|....+
T Consensus       369 ~~G~~~~~  376 (384)
T 3kld_A          369 KHGVIFSS  376 (384)
T ss_dssp             TTEEEEEE
T ss_pred             CCceEEec
Confidence            98875444

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=97.72  E-value=0.00038  Score=50.43  Aligned_cols=61  Identities=18%  Similarity=0.262  Sum_probs=44.3

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceE-EEEeeccEEEEEEeC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIR-ITEESSRSLQISWTA   78 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~-~~~~~~~~~~l~W~~   78 (273)
                      ...|.|.++..+|.|.|+|.+.| .|.....+.+.+..+|..|.... ........+.|.+..
T Consensus        79 ~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~  140 (222)
T 3sbw_C           79 NAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA  140 (222)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEe
Confidence            46899999999999999999999 56666677888887776654322 122345567777764

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=97.72  E-value=0.00025  Score=52.45  Aligned_cols=115  Identities=10%  Similarity=0.096  Sum_probs=68.3

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCc-----eeEEEEEEecCCCCCcceE-----EEEeeccEEEEEEeCCCCCCccce
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTA-----EMTIQLLVQETPEAPKNIR-----ITEESSRSLQISWTAPYSGNTAIT   87 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~-----~~~~~~~~~~~P~~p~~~~-----~~~~~~~~~~l~W~~~~~~~~~~~   87 (273)
                      ..|.|.++.++|.|.|+|.+.|..+..     ...+.+.+..+|.+|....     +.......+.|.+.....+. +  
T Consensus        90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~-p--  166 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCAN-A--  166 (250)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTT-C--
T ss_pred             ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCC-C--
Confidence            479999999999999999999987754     3467777766544332211     11112455666665432111 1  


Q ss_pred             EEEEEEEeCCC--CCCCcc---------------------ceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          88 QYIIQYKSSEE--MWPTQP---------------------LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        88 ~y~v~~~~~~~--~~~~~~---------------------~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                        .+.|...+.  .+....                     ..... .....+.|.++.......|.|.|.|..|
T Consensus       167 --~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~g  237 (250)
T 2fbo_J          167 --NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASF-SGARNLVIRAAKITDAGRVWCELATGQG  237 (250)
T ss_dssp             --EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEE-ETTTEEEECSCCGGGCEEEEEEEESSSS
T ss_pred             --eeEEEeCCCcccccccCcceeEeccCCCCccccCceEeccccc-CCccEEEEecCCcccCEEEEEEecCCcc
Confidence              333333221  111000                     00000 1235788999999999999999999776

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=97.72  E-value=0.001  Score=52.88  Aligned_cols=209  Identities=13%  Similarity=0.056  Sum_probs=108.4

Q ss_pred             EEEEeeeeeCC-CEEEEEEEEcCCCCcee---EEEEEEecCC----CCCc------c-eEEEEeeccEEEEEEeCCCCCC
Q psy6638          19 ELGIANVLRQD-SGTLSCLATNYHGTAEM---TIQLLVQETP----EAPK------N-IRITEESSRSLQISWTAPYSGN   83 (273)
Q Consensus        19 ~l~i~~~~~~~-~~~y~~~a~n~~g~~~~---~~~~~~~~~P----~~p~------~-~~~~~~~~~~~~l~W~~~~~~~   83 (273)
                      .|.|.++...| .|.|+|.+.|..|....   .+.+.+...+    .+|.      . ..........+.|.+....  .
T Consensus       172 ~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g--~  249 (404)
T 3p3y_A          172 DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASG--V  249 (404)
T ss_dssp             CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCC--S
T ss_pred             cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECC--C
Confidence            69999999999 59999999998886433   2334443211    1111      1 1122334566777776432  1


Q ss_pred             ccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeEE
Q psy6638          84 TAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVT  163 (273)
Q Consensus        84 ~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~~  163 (273)
                      ...   .+.|...+........  ........+.|.++.......|+|.|.|..|.......+.+...+... ..|....
T Consensus       250 p~~---~v~W~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~-~~~~~~~  323 (404)
T 3p3y_A          250 PTP---DIAWYKKGGDLPSDKA--KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWL-DEPKNLI  323 (404)
T ss_dssp             SCC---EEEEEETTBCCCTTTE--EEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEE-ECCCCEE
T ss_pred             CCC---cEEEEECCEECCCCcc--cccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeee-ccCCcce
Confidence            112   4666665543221111  222234678899999999999999999988743222222222111100 1222333


Q ss_pred             ecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEe
Q psy6638         164 SDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGY  243 (273)
Q Consensus       164 ~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~  243 (273)
                      +..    ...+.|........       .-.+.|...+..-..... .. ....   ......|.++.....-.|+..|.
T Consensus       324 v~~----g~~~~l~C~~~g~p-------~p~v~W~~~g~~~~~~~~-~~-~~~~---~~~~L~i~~v~~~d~G~Y~C~a~  387 (404)
T 3p3y_A          324 LAP----GEDGRLVCRANGNP-------KPTVQWMVNGEPLQSAPP-NP-NREV---AGDTIIFRDTQISSRAVYQCNTS  387 (404)
T ss_dssp             ECT----TCCEEEECEEEEES-------CCEEEEEETTEEGGGSCC-CT-TEEE---ETTEEEESSCCSSCCCEEEEEEE
T ss_pred             eec----CCcEEEEEEccccC-------CCceEEEECCEecCCCCC-Cc-eEEe---cCCEEEEeecCHHHCEEEEEEEE
Confidence            322    23344444332110       013444443321100000 00 0000   12467888888888888899999


Q ss_pred             cCCCcCCC
Q psy6638         244 NSVGKGPF  251 (273)
Q Consensus       244 n~~g~~~~  251 (273)
                      |..|....
T Consensus       388 N~~G~~~~  395 (404)
T 3p3y_A          388 NEHGYLLA  395 (404)
T ss_dssp             ETTEEEEE
T ss_pred             eCCCcEEE
Confidence            99887543

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.71  E-value=8.8e-05  Score=46.80  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=35.9

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK   60 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~   60 (273)
                      .++....|.|.++..+|.|.|+|.|.|    ....+.+.+..+|.++.
T Consensus        59 ~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~~l~V~~~p~p~s  102 (103)
T 1x44_A           59 VEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLKSGPSS  102 (103)
T ss_dssp             EETTEEEEEEEEECTTTCSEEEEEETT----EEEEEEEEEECCCSCCC
T ss_pred             EcCCEEEEEECCCCcccCEEEEEEECC----CcEEEEEEEeCCCCCCC
Confidence            456677999999999999999999987    45677788888877653

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=97.71  E-value=4.2e-05  Score=49.94  Aligned_cols=42  Identities=31%  Similarity=0.389  Sum_probs=37.3

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      ..+.|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.
T Consensus        72 ~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~p~  113 (122)
T 3s35_X           72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPF  113 (122)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEC
T ss_pred             EEEEEEECCCCcccCEEEEEEEccCCCceEEEEEEEEeccCe
Confidence            345799999999999999999999999988888888887764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=97.71  E-value=6.1e-05  Score=59.88  Aligned_cols=113  Identities=16%  Similarity=0.207  Sum_probs=72.7

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      ..|.|.++..+|.|.|+|.|.|..|.... .+.+.+..+|.   .|.. .........+.|.+.....+  ..   .+.|
T Consensus       270 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~-~~~~~~g~~~~l~C~~~g~p--~p---~v~W  343 (395)
T 1bih_A          270 KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEK-VIVVKQGQDVTIPCKVTGLP--AP---NVVW  343 (395)
T ss_dssp             SEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCS-EEEECTTSCEEEECEEEEES--CC---CCEE
T ss_pred             ceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCc-ceEecCCCeEEEEEEECccc--CC---eeEE
Confidence            47999999999999999999999998766 77888877664   2222 12223345566666532111  11   1445


Q ss_pred             EeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          94 KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ...+......  .....  ...+.|.++.......|.|.|.|..|..
T Consensus       344 ~~~g~~~~~~--~~~~~--~~~L~i~~~~~~d~G~Y~C~a~N~~G~~  386 (395)
T 1bih_A          344 SHNAKPLSGG--RATVT--DSGLVIKGVKNGDKGYYGCRATNEHGDK  386 (395)
T ss_dssp             EETTEECCSS--SEEEE--TTEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred             EECCEECCCC--ceEEE--CCEEEEeeCCcccCEEEEEEEEccCCCc
Confidence            4443221111  11121  2378899999999999999999988743

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=97.71  E-value=0.0023  Score=47.43  Aligned_cols=124  Identities=8%  Similarity=-0.039  Sum_probs=67.5

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCce-eEEEEEEecC-----------C-CCCcce----EEEEeeccEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQET-----------P-EAPKNI----RITEESSRSLQISW   76 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~-~~~~~~~~~~-----------P-~~p~~~----~~~~~~~~~~~l~W   76 (273)
                      .+..+.|.|.++.++|.|.|.|.+.|..+... ....+.+...           + .+|.-.    .........++|.+
T Consensus        76 ~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C  155 (253)
T 3uzq_A           76 SSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISC  155 (253)
T ss_dssp             TTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEE
T ss_pred             CCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEE
Confidence            34467899999999999999999998655542 3445555532           1 111111    02223455677777


Q ss_pred             eCCCCCCccceEEEEEEEeCC--CCCC-------------CccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          77 TAPYSGNTAITQYIIQYKSSE--EMWP-------------TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        77 ~~~~~~~~~~~~y~v~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      ...... .+...+.+.|....  ....             ..............+.|.++.......|.|.+.|..+
T Consensus       156 ~~~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~  231 (253)
T 3uzq_A          156 RASENV-DRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVP  231 (253)
T ss_dssp             EESSCC-EETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             EecCcc-ccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCC
Confidence            643211 11001234443321  1000             0001111122344688999999999999999988644

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=97.71  E-value=0.0014  Score=51.80  Aligned_cols=203  Identities=17%  Similarity=0.101  Sum_probs=104.3

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeE-----EEEEEec------CCC----CCcceEEEEeeccEEEEEEeCCCCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMT-----IQLLVQE------TPE----APKNIRITEESSRSLQISWTAPYSG   82 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~-----~~~~~~~------~P~----~p~~~~~~~~~~~~~~l~W~~~~~~   82 (273)
                      ..|.|.++..+|.|.|+|.+.|..|.....     ..+.+..      +|.    .|..  ........+.|.+..... 
T Consensus       158 ~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~--~~~~~G~~v~l~C~~~g~-  234 (382)
T 1cs6_A          158 GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPAD--TYALTGQMVTLECFAFGN-  234 (382)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSE--EEEETTCCEEEECEEEEE-
T ss_pred             eEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCc--eEEeCCCeEEEEEEEccC-
Confidence            369999999999999999999987644322     2333321      111    1212  222334556666543211 


Q ss_pred             CccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCCCCCeeE
Q psy6638          83 NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREV  162 (273)
Q Consensus        83 ~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~~p~~~  162 (273)
                        +..  .+.|...+.....     ........+.|.++.......|++.|.|..|.......+.+...+... ..+...
T Consensus       235 --p~~--~i~W~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~-~~~~~~  304 (382)
T 1cs6_A          235 --PVP--QIKWRKLDGSQTS-----KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWL-DVITDT  304 (382)
T ss_dssp             --SCC--EEEEEECCSCCSC-----CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEE-ECCCCE
T ss_pred             --CCC--EEEEEECCccccc-----EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcc-cCCCcc
Confidence              111  3555544332110     112245578888898888899999999987753222222222211100 011222


Q ss_pred             EecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEE
Q psy6638         163 TSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRG  242 (273)
Q Consensus       163 ~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a  242 (273)
                      .+.    ....+.|........  .     -.+.|...+..-.....     ...   ......|.++.....-.|+..|
T Consensus       305 ~~~----~g~~~~l~C~~~g~p--~-----p~v~W~~~g~~~~~~~~-----~~~---~~~~L~i~~v~~~d~G~Y~C~a  365 (382)
T 1cs6_A          305 EAD----IGSDLRWSCVASGKP--R-----PAVRWLRDGQPLASQNR-----IEV---SGGELRFSKLVLEDSGMYQCVA  365 (382)
T ss_dssp             EEE----TTCCEEEECEEEEES--C-----CEEEEEETTEECCCCSS-----EEE---ETTEEEESSCCGGGCEEEEEEE
T ss_pred             EEc----CCCeEEEEEEeeeec--C-----CEEEEEECCEECCCCce-----EEE---ECCEEEECcCCcccCEEEEEEE
Confidence            222    223344444331110  0     12444443321100000     001   1246888999999899999999


Q ss_pred             ecCCCcCCCC
Q psy6638         243 YNSVGKGPFS  252 (273)
Q Consensus       243 ~n~~g~~~~s  252 (273)
                      .|..|....+
T Consensus       366 ~N~~G~~~~~  375 (382)
T 1cs6_A          366 ENKHGTVYAS  375 (382)
T ss_dssp             EETTEEEEEE
T ss_pred             EeCCCeEEEE
Confidence            9998875433

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=97.70  E-value=0.00011  Score=45.81  Aligned_cols=41  Identities=22%  Similarity=0.368  Sum_probs=35.4

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      .+..+.|.|.++...|.|.|+|.|.|..|.....+.+.+..
T Consensus        54 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   94 (97)
T 2bk8_A           54 EDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKG   94 (97)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEETT
T ss_pred             cCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEEEe
Confidence            44567899999999999999999999999988888777654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=97.70  E-value=0.00022  Score=54.74  Aligned_cols=121  Identities=16%  Similarity=0.179  Sum_probs=71.5

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec----------------CC-C-------CCcceEEEEee
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE----------------TP-E-------APKNIRITEES   68 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~----------------~P-~-------~p~~~~~~~~~   68 (273)
                      ..+....|.|.++..+|.|.|+|.|.|..|.....+.+.+..                .+ .       .|....+  ..
T Consensus       159 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v--~~  236 (317)
T 2y25_A          159 VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTI--QE  236 (317)
T ss_dssp             ECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEE--ET
T ss_pred             ccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEE--Ec
Confidence            355667899999999999999999999988877776665421                01 1       1222222  23


Q ss_pred             ccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccc-eEEec-CCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          69 SRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPL-KIIVP-GSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        69 ~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ...+.|.+...  +....   .+.|...+........ ..... +....+.|.++.......|++.|.|..|..
T Consensus       237 g~~~~l~C~~~--g~p~p---~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  305 (317)
T 2y25_A          237 GKALNLTCNVW--GDPPP---EVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE  305 (317)
T ss_dssp             TSBBCEEEEEE--CSSCC---EEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEE
T ss_pred             CCEEEEEEEEe--cCCCC---EEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeE
Confidence            34444444422  11111   2555554321111111 11111 233478899999999999999999988743

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=97.69  E-value=8.2e-06  Score=53.49  Aligned_cols=53  Identities=36%  Similarity=0.519  Sum_probs=41.4

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCC-EEEEEEEEcCCCCceeEEEEEEecC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDS-GTLSCLATNYHGTAEMTIQLLVQET   55 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~-~~y~~~a~n~~g~~~~~~~~~~~~~   55 (273)
                      .||.+......++..+.|.|.++.++|. |.|+|.|.|..|.....+.+.+..+
T Consensus        61 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~  114 (122)
T 2cry_A           61 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS  114 (122)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCS
T ss_pred             CCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCeEEEEEEEEECCC
Confidence            4566654433444477899999999999 9999999999999888877777644

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=97.69  E-value=0.00033  Score=50.77  Aligned_cols=132  Identities=16%  Similarity=0.045  Sum_probs=76.7

Q ss_pred             eEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCce-eEEEEEEecCCC------------CCcceE----EEEe
Q psy6638           5 YTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPE------------APKNIR----ITEE   67 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~-~~~~~~~~~~P~------------~p~~~~----~~~~   67 (273)
                      |......+..+....|.|.++...|.|.|+|.+.|..|... ..+.+.+...|.            +|....    ....
T Consensus        52 W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~  131 (218)
T 3k0w_A           52 WFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLM  131 (218)
T ss_dssp             EEETTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEEC
T ss_pred             EEECCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeec
Confidence            33333344445566899999999999999999999887653 356666654421            111100    1112


Q ss_pred             eccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceE
Q psy6638          68 SSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQ  147 (273)
Q Consensus        68 ~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~  147 (273)
                      ....+.|.+...  +....   .+.|...+...        .......+.|.++.......|+|.|.|..|.. .+..+.
T Consensus       132 ~G~~v~L~C~~~--g~p~~---~v~W~~~~~~~--------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~s~~~~  197 (218)
T 3k0w_A          132 PGSTLVLQCVAV--GSPIP---HYQWFKNELPL--------THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ-DSKKVE  197 (218)
T ss_dssp             TTCCEEEECEEE--BSSCC---EEEEEETTEEC--------TTCCSSEEEESSCCGGGCEEEEEEEECSSCEE-ECCCEE
T ss_pred             CCCcEEEEEEec--ccCCC---eEEEEECCEEC--------CCCCCCEEEEeecChhcCEEEEEEEEcCCCCc-eeeeEE
Confidence            234556665542  11111   25555443221        11234578888899888999999999977642 233344


Q ss_pred             EEe
Q psy6638         148 AST  150 (273)
Q Consensus       148 ~~~  150 (273)
                      +..
T Consensus       198 l~V  200 (218)
T 3k0w_A          198 III  200 (218)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=97.69  E-value=7.9e-05  Score=46.53  Aligned_cols=41  Identities=32%  Similarity=0.368  Sum_probs=35.2

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      .+....|.|.++..+|.|.|+|.|.|..|.....+.+.+..
T Consensus        58 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           58 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA   98 (99)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEEEec
Confidence            34567899999999999999999999999888887777653

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=97.68  E-value=0.00048  Score=48.45  Aligned_cols=112  Identities=13%  Similarity=0.032  Sum_probs=65.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCc--eeEEEEEEecCCCCCcceEE---EEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTA--EMTIQLLVQETPEAPKNIRI---TEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~--~~~~~~~~~~~P~~p~~~~~---~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      ..|.|.++.++|.|.|+|.+.|..|..  ...+.+.+...+.+|.-...   .......+.|.+.....   +.   .+.
T Consensus        52 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~---~~---~~~  125 (184)
T 2gi7_A           52 AVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYG---FD---QFA  125 (184)
T ss_dssp             SEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSC---CC---EEE
T ss_pred             cEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCC---Cc---EEE
Confidence            479999999999999999999987632  23566666554433332111   11235667888875321   22   344


Q ss_pred             EEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          93 YKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      |...+..........   .....+.|.++.......|++.|.|..+
T Consensus       126 w~k~g~~~~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          126 LYKEGDPAPYKNPER---WYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EEECCCCTTSCCCCE---EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             EEECCCcCcceecCC---CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            444443211111000   1122345666777778889999998764

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.68  E-value=0.0025  Score=47.03  Aligned_cols=128  Identities=12%  Similarity=0.013  Sum_probs=77.3

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCc--eeEEEEEEecCCCCCcceE---EEEeeccEEEEEEeCCCCCCccceEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTA--EMTIQLLVQETPEAPKNIR---ITEESSRSLQISWTAPYSGNTAITQY   89 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~--~~~~~~~~~~~P~~p~~~~---~~~~~~~~~~l~W~~~~~~~~~~~~y   89 (273)
                      .....|.|.++.++|.|.|+|.+.|..+..  ...+.+.+...+..|.-..   ........++|.+.....   . .  
T Consensus        57 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~---~-~--  130 (242)
T 1p6f_A           57 INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA---T-S--  130 (242)
T ss_dssp             CCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTS---C-S--
T ss_pred             cceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCC---C-C--
Confidence            346689999999999999999998865432  3356666765433332110   112346678888886421   1 2  


Q ss_pred             EEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCC-CCCCCCcceEEEec
Q psy6638          90 IIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL-GMSETGAELQASTL  151 (273)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~-g~~~~s~~~~~~~~  151 (273)
                      .+.|...+....   ...........+.|.++.......|+|.+.|.. .++..+..+.+...
T Consensus       131 ~~~w~k~g~~~~---~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  190 (242)
T 1p6f_A          131 MFLLLKEGRSSH---VQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  190 (242)
T ss_dssp             EEEEEECSSSCE---EEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             EEEEEECCCccC---ccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEe
Confidence            334444433211   111122345678888888888888999888753 34555666655554

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.68  E-value=8e-05  Score=47.04  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=35.4

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK   60 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~   60 (273)
                      ++....|.|.++..+|.|.|+|.|.|..+    .+.+.+..+|.+|.
T Consensus        61 ~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~----~~~l~V~~~P~pp~  103 (104)
T 2e6p_A           61 DGRKHRLILPEAKVQDSGEFECRTEGVSA----FFGVTVQDPSGPSS  103 (104)
T ss_dssp             ETTEEEEEESSCCTTTCEEEEEECSSCCC----CEEEEEECCCCSSC
T ss_pred             CCCEEEEEECCCChhhCEEEEEEECCceE----EEEEEEcCCCCCcC
Confidence            55677899999999999999999998743    56777788887764

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=97.68  E-value=4.3e-05  Score=48.64  Aligned_cols=42  Identities=24%  Similarity=0.434  Sum_probs=30.8

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP   59 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p   59 (273)
                      ..|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|..|
T Consensus        64 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~  105 (108)
T 3kvq_A           64 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT  105 (108)
T ss_dssp             TEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC-----
T ss_pred             cEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeCCCccc
Confidence            479999999999999999999999999999999988877654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=97.65  E-value=9e-05  Score=46.23  Aligned_cols=40  Identities=25%  Similarity=0.281  Sum_probs=34.6

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      ++..+.|.|.++..+|.|.|+|.|.|..|.....+.+.+.
T Consensus        58 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           58 DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEE
Confidence            4556789999999999999999999999988777777664

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=97.64  E-value=0.001  Score=53.83  Aligned_cols=119  Identities=15%  Similarity=0.099  Sum_probs=69.9

Q ss_pred             ecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCC----CcceEEEEeeccEEEEEEeCCCCCCccce
Q psy6638          12 LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA----PKNIRITEESSRSLQISWTAPYSGNTAIT   87 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~----p~~~~~~~~~~~~~~l~W~~~~~~~~~~~   87 (273)
                      ..++....|.|.++.. |.| |+|.+.+..+.....+.+.+..+|..    |.+.  .......+.|.+.....  .+..
T Consensus        44 ~~~~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~--~v~~G~~v~L~C~~~g~--~~~~  117 (450)
T 1z7z_I           44 LPGNNRKVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPS--WQPVGKNLTLRCQVEGG--APRA  117 (450)
T ss_dssp             SSTTTEEEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEEBCCSEEEECCCCS--EECTTSEEEEEEEEECC--BCGG
T ss_pred             ecCCCceEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEEeCCCcceecCCCc--eEeeCCeEEEEEEecCC--CCCc
Confidence            3345667899999987 888 99999866555555677777766542    1222  12245567777764321  1222


Q ss_pred             EEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          88 QYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        88 ~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      .+.+.|...+......  ..........+.|..........|++.|.|..|
T Consensus       118 ~~~v~W~k~g~~l~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  166 (450)
T 1z7z_I          118 NLTVVLLRGEKELKRE--PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLR  166 (450)
T ss_dssp             GEEEEEEETTEEEEEE--ECCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             CcEEEEeeCCEEeecc--cccccccceEEEEEeeccccCceEEEEEEcccC
Confidence            2345665543211000  000011223677888888888888999998866

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=97.64  E-value=0.0022  Score=50.68  Aligned_cols=117  Identities=14%  Similarity=0.093  Sum_probs=70.9

Q ss_pred             EEEEeeeeeCC------CEEEEEEEEcCCCCce-eEEEEEEecCCCCCcceE-EEEeeccEEEEEEeCCCCCCccceEEE
Q psy6638          19 ELGIANVLRQD------SGTLSCLATNYHGTAE-MTIQLLVQETPEAPKNIR-ITEESSRSLQISWTAPYSGNTAITQYI   90 (273)
Q Consensus        19 ~l~i~~~~~~~------~~~y~~~a~n~~g~~~-~~~~~~~~~~P~~p~~~~-~~~~~~~~~~l~W~~~~~~~~~~~~y~   90 (273)
                      +|.|.++...|      .|.|+|.|.|..|... ..+.+.+..+|.....+. ........+.|.+........  ....
T Consensus        60 ~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~--~~~~  137 (388)
T 2v5m_A           60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVAD--FVEV  137 (388)
T ss_dssp             EEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTT--TEEE
T ss_pred             eEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCC--Ccce
Confidence            69999999987      9999999999988643 356666665554322211 233356678888876432111  1245


Q ss_pred             EEEEeCCCCCC----CccceEEecCCccEEEecCCCCCCe-EEEEEEEeCCCC
Q psy6638          91 IQYKSSEEMWP----TQPLKIIVPGSQTSATLQPLLPATQ-YQVRLLAENPLG  138 (273)
Q Consensus        91 v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~-y~~~v~a~~~~g  138 (273)
                      +.|...+..-.    ........ .....+.|.++..... ..|+|.+.+..+
T Consensus       138 v~W~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~  189 (388)
T 2v5m_A          138 VSWHTDEEENYFPGAEYDGKYLV-LPSGELHIREVGPEDGYKSYQCRTKHRLT  189 (388)
T ss_dssp             EEEEETTCCEECSSSCBTTTEEE-CTTSCEEESSCCGGGGGCCEEEEEEETTT
T ss_pred             EEEEeCCCcccccccCCCCcEEE-ccCCcEEEecCCccccCeeEEEEeccCCC
Confidence            66665443210    00011111 1234688888888877 788888887654

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.64  E-value=7.1e-05  Score=46.91  Aligned_cols=38  Identities=34%  Similarity=0.474  Sum_probs=34.1

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      .|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|
T Consensus        63 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  100 (100)
T 2edj_A           63 TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESG  100 (100)
T ss_dssp             CEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEESCC
T ss_pred             EEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEecCC
Confidence            69999999999999999999999998888888877654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=97.63  E-value=0.00099  Score=51.09  Aligned_cols=116  Identities=13%  Similarity=0.061  Sum_probs=68.8

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec-CCCC---CcceE-EEEeeccEEEEEEeCC----CCCCccceEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE-TPEA---PKNIR-ITEESSRSLQISWTAP----YSGNTAITQY   89 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~-~P~~---p~~~~-~~~~~~~~~~l~W~~~----~~~~~~~~~y   89 (273)
                      .|.|.++..+|.|.|+|.+.|..|.....+.+.+.. +|..   +.... ........+.|.+...    ..+. +.  .
T Consensus        63 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~-p~--~  139 (315)
T 1itb_B           63 KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENN-EL--P  139 (315)
T ss_dssp             BEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTT-CC--C
T ss_pred             eEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCC-CC--C
Confidence            699999999999999999999988776655555432 3322   12211 2223456678887641    0111 11  1


Q ss_pred             EEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe-CCCCC
Q psy6638          90 IIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE-NPLGM  139 (273)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~-~~~g~  139 (273)
                      .+.|...+............  ....+.|.++.......|++.|. |..|.
T Consensus       140 ~i~W~k~~~~l~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~  188 (315)
T 1itb_B          140 KLQWYKDCKPLLLDNIHFSG--VKDRLIVMNVAEKHRGNYTCHASYTYLGK  188 (315)
T ss_dssp             CCEEEETTEECCCCSSSEEE--ETTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEEEEECCEECCCccceEee--cCceEEEEeceehhCcEEEEEEEcCCCCc
Confidence            24444433221101111111  23478889999999999999998 66663

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=97.63  E-value=0.00024  Score=56.16  Aligned_cols=114  Identities=21%  Similarity=0.249  Sum_probs=73.8

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      ...|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.   .+....  ......+.|.+....  ....   .+.|
T Consensus       256 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~--~~~g~~~~l~C~~~g--~p~p---~v~W  328 (382)
T 1cs6_A          256 EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTE--ADIGSDLRWSCVASG--KPRP---AVRW  328 (382)
T ss_dssp             SSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEE--EETTCCEEEECEEEE--ESCC---EEEE
T ss_pred             CcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccE--EcCCCeEEEEEEeee--ecCC---EEEE
Confidence            45799999999999999999999999887788888876664   233322  223455666554321  1111   2555


Q ss_pred             EeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          94 KSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ...+....... ....  ....+.|.++.......|+|.|.|..|..
T Consensus       329 ~~~g~~~~~~~-~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  372 (382)
T 1cs6_A          329 LRDGQPLASQN-RIEV--SGGELRFSKLVLEDSGMYQCVAENKHGTV  372 (382)
T ss_dssp             EETTEECCCCS-SEEE--ETTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EECCEECCCCc-eEEE--ECCEEEECcCCcccCEEEEEEEEeCCCeE
Confidence            55443211111 1111  23478899999999999999999988743

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=97.61  E-value=0.0005  Score=48.45  Aligned_cols=113  Identities=22%  Similarity=0.210  Sum_probs=68.1

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCce-eEEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~-~~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      .|.|.++...|.|.|+|.+.|..|... ....+.+..+|.   +|....  ......+.|.+....  . +..  .+.|.
T Consensus        63 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~--~~~g~~~~l~C~~~g--~-p~~--~v~W~  135 (192)
T 2iep_A           63 LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVK--IIEGLKAVLPCTTMG--N-PKP--SVSWI  135 (192)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEE--EETTSCEEECCEEEE--E-SCC--EEEEE
T ss_pred             EEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceE--EeCCCcEEEEEEEec--c-CCc--eEEEE
Confidence            699999999999999999999888743 455666655543   233322  223444555554311  1 111  25555


Q ss_pred             eCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          95 SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ..+......... .. .....+.|.++.......|++.|.|..|..
T Consensus       136 ~~~~~~~~~~~~-~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  179 (192)
T 2iep_A          136 KGDSALRENSRI-AV-LESGSLRIHNVQKEDAGQYRCVAKNSLGTA  179 (192)
T ss_dssp             ETTEECCCCSSE-EE-CTTSCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             eCCEEccCCCcE-EE-ecCCcEEEecCChhhCEEEEEEEEcCCCcE
Confidence            443221111111 11 123468888888888899999999987743

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=97.61  E-value=0.0001  Score=51.84  Aligned_cols=101  Identities=18%  Similarity=0.126  Sum_probs=64.4

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS   96 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~   96 (273)
                      ...|.|.++..+|.|.|+|.+.|..|    .+.+.+...+.++. ..+  .....+.|.+.....   +.  ..+.|...
T Consensus        67 ~~~L~i~~v~~~D~G~Y~C~~~~~~~----~~~l~V~~~~~~~~-~~v--~~g~~~~l~C~~~~~---p~--~~v~W~~~  134 (184)
T 2ny1_B           67 NFPLIIKNLKIEDSDTYICEVEDQKE----EVQLLVFGLTANSD-THL--LQGQSLTLTLESPPG---SS--PSVQCRSP  134 (184)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTEEE----EEEEEEEEEEESSC-SEE--ETTCCEEEEEECCTT---CC--CEEEEECT
T ss_pred             eEEEEEecCCHHHCEEEEEEEEcCCC----cEEEEEEEecCCCC-cee--ecCCCEEEEEEcCCC---CC--CEEEEEeC
Confidence            45699999999999999999998754    33444433332222 212  345567777776432   22  24555544


Q ss_pred             CCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          97 EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      +..       ..  .....+.|.++.......|.+.|.|..+
T Consensus       135 ~~~-------~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  167 (184)
T 2ny1_B          135 RGK-------NI--QGGKTLSVSQLELQDSGTWTCTVLQNQK  167 (184)
T ss_dssp             TSC-------EE--EESSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCc-------cc--cCceEEEEecCCcCCCeEEEEEEEECCc
Confidence            332       11  1345788888888888899999987655

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=97.61  E-value=6.9e-05  Score=46.29  Aligned_cols=38  Identities=21%  Similarity=0.278  Sum_probs=32.9

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ...+.|.|.++..+|.|.|+|.|.|..|.....+.+.+
T Consensus        55 ~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           55 SSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             TTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEEEE
Confidence            44578999999999999999999999998777777655

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=97.61  E-value=0.003  Score=47.69  Aligned_cols=63  Identities=17%  Similarity=0.268  Sum_probs=36.7

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCc---eeEEEEEEecCCC--CCcce---EEEEeeccEEEEEEeCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTA---EMTIQLLVQETPE--APKNI---RITEESSRSLQISWTAP   79 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~---~~~~~~~~~~~P~--~p~~~---~~~~~~~~~~~l~W~~~   79 (273)
                      ...|.|.++..+|.|.|+|.|.|..|..   ...+.+.+..++.  .+...   .+.......+.|.+...
T Consensus        50 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~  120 (289)
T 3mjg_X           50 SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT  120 (289)
T ss_dssp             EEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS
T ss_pred             eEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC
Confidence            4789999999999999999999988762   2344444432221  11111   13334456677777654

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.61  E-value=8.1e-05  Score=46.93  Aligned_cols=44  Identities=25%  Similarity=0.408  Sum_probs=36.7

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK   60 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~   60 (273)
                      .++..+.|.|.++..+|.|.|+|.|.|    ....+.+.+..+|.+|.
T Consensus        58 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~~~p~~~~  101 (103)
T 2edf_A           58 CEGTMAMLVIRGASLKDAGEYTCEVEA----SKSTASLHVEEKASGPS  101 (103)
T ss_dssp             EETTEEEEEESSCCTTTCSEEEEECSS----CEEEEEEEECCCSSSSC
T ss_pred             ECCCEEEEEECCCCcccCEEEEEEEcc----CCcEEEEEEeCCCCCCC
Confidence            356678899999999999999999998    35677888888887664

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.59  E-value=0.0026  Score=46.90  Aligned_cols=118  Identities=9%  Similarity=-0.004  Sum_probs=65.0

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCc--eeEEEEEEecCCC------------CCcce----EEEEeeccEEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTA--EMTIQLLVQETPE------------APKNI----RITEESSRSLQISW   76 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~--~~~~~~~~~~~P~------------~p~~~----~~~~~~~~~~~l~W   76 (273)
                      +...+|.|.++.++|.|.|+|.+.|..+..  .....+.+...|.            ++.-.    .+.......+.|.+
T Consensus        78 ~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C  157 (247)
T 2ghw_B           78 KNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSC  157 (247)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEE
T ss_pred             CCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEE
Confidence            456789999999999999999999873221  1234566654421            11111    11223455677777


Q ss_pred             eCCCCCCccceEEEEEEEe--CCCCC-------------CCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCC
Q psy6638          77 TAPYSGNTAITQYIIQYKS--SEEMW-------------PTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL  137 (273)
Q Consensus        77 ~~~~~~~~~~~~y~v~~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~  137 (273)
                      ....... +    .+.|..  .+...             ...............+.|.++.......|.|.|.+..
T Consensus       158 ~~~~~~~-~----~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          158 RASQSVR-S----NLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             EESSCCT-T----CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             EeCCCcc-c----eEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence            6432211 1    233332  11110             0000011112233468889999999999999998753

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=97.58  E-value=0.0004  Score=55.29  Aligned_cols=113  Identities=19%  Similarity=0.256  Sum_probs=72.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEe
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS   95 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~   95 (273)
                      .|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.   .|....  ......+.|.+.....   +..  .+.|..
T Consensus       276 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~--~~~g~~v~l~C~~~g~---p~p--~v~W~~  348 (403)
T 3laf_A          276 NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLY--AYESMDIEFECAVSGK---PVP--TVNWMK  348 (403)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEE--CCTTCCEEECCEEEEE---SCC--EEEEEE
T ss_pred             EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceE--EecCCeEEEEEEEeec---cCC--EEEEEE
Confidence            699999999999999999999999888888888876653   333322  2234445555543111   111  355555


Q ss_pred             CCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          96 SEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      .+............  ....+.|..+.......|.|.|.|..|..
T Consensus       349 ~g~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  391 (403)
T 3laf_A          349 NGDVVIPSDYFQIV--GGSNLRILGVVKSDEGFYQCVAENEAGNA  391 (403)
T ss_dssp             TTEECCCSSSEEEE--TTTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCEECCCCCcEEEe--cCccEEEeccccccCEEEEEEEEcCCceE
Confidence            44221111111111  33568888888888999999999988743

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=97.58  E-value=0.00015  Score=51.57  Aligned_cols=107  Identities=10%  Similarity=0.116  Sum_probs=61.0

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEE---eecc-EEEEEEeCCCCCCccceEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITE---ESSR-SLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~---~~~~-~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      ..|.|.+++.+|.|.|+|.+.+..|.....+.+.+..+|..|.-. ...   .... .+.|.+....  ..+..  .+.|
T Consensus        70 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~-~~~~~~~~g~~~v~L~C~~~g--~~p~p--~i~W  144 (193)
T 2if7_A           70 YSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVT-NHSQLFQNMTCELHLTCSVED--ADDNV--SFRW  144 (193)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEE-ECCC---CSSEEEEEEEEEES--CCTTC--EEEE
T ss_pred             eEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEe-cCceeecCCCceEEEEEEEec--CCCce--EEEE
Confidence            379999999999999999999988876667777776655433211 110   1222 5777776432  11111  3455


Q ss_pred             EeCCCCCCCccceEEecCCccEEEec-CCCCCCeEEEEEEEeCCCCC
Q psy6638          94 KSSEEMWPTQPLKIIVPGSQTSATLQ-PLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~y~~~v~a~~~~g~  139 (273)
                      ...+..        ...  ...+.+. .........|.+.|.|..|.
T Consensus       145 ~~~g~~--------l~~--~~~l~i~~~~~~~d~G~Y~C~a~N~~g~  181 (193)
T 2if7_A          145 EALGNT--------LSS--QPNLTVSWDPRISSEQDYTCIAENAVSN  181 (193)
T ss_dssp             EETTEE--------EES--SSEEEEEECTTTCSCCEEEEEEEETTEE
T ss_pred             EeCCEE--------cCC--CCeEEEEeccCcCCCCcEEEEEECCCCc
Confidence            543321        111  1223332 12222456778888887763

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.58  E-value=0.00024  Score=44.66  Aligned_cols=44  Identities=34%  Similarity=0.521  Sum_probs=37.6

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK   60 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~   60 (273)
                      .++....|.|.++..+|.|.|+|.    .|.....+.+.+...|.+|.
T Consensus        58 ~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l~V~~~p~~p~  101 (103)
T 2dku_A           58 QEGLTLRLTISALEKADSDTYTCD----IGQAQSRAQLLVQGRRSGPS  101 (103)
T ss_dssp             EETTEEEEEEESCCTTTCSEEEEE----CSSCBCCEEEEEECSCCCCS
T ss_pred             eCCCEEEEEECCCCcccCEEEEEE----eCCceEEEEEEEeCccCCCC
Confidence            366777999999999999999998    67777788899988888774

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.58  E-value=0.0016  Score=47.74  Aligned_cols=115  Identities=11%  Similarity=0.050  Sum_probs=62.4

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCce-----eEEEEEEecCCC---------------CCcceEEEEeeccEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAE-----MTIQLLVQETPE---------------APKNIRITEESSRSLQI   74 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~-----~~~~~~~~~~P~---------------~p~~~~~~~~~~~~~~l   74 (273)
                      +....|.|.++.++|.|.|+|.+.|..|...     ....+.+...+.               .|..  +.......++|
T Consensus        70 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~--~~v~~G~~v~L  147 (238)
T 2p1y_A           70 QENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQS--LTVWEGETAIL  147 (238)
T ss_dssp             SSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSE--EEEETTSCEEE
T ss_pred             CceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCce--EEEeCCCeEEE
Confidence            3456899999999999999999999866311     233455544332               1222  22334566777


Q ss_pred             EEeCCCCCCccceEEEEEEEeCC-CCCCC------------ccceEE----ecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          75 SWTAPYSGNTAITQYIIQYKSSE-EMWPT------------QPLKII----VPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        75 ~W~~~~~~~~~~~~y~v~~~~~~-~~~~~------------~~~~~~----~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      .+....... +    .+.|.... +.-..            ......    .......+.|.++.......|.|.|.|.
T Consensus       148 ~C~~~~~p~-~----~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  221 (238)
T 2p1y_A          148 NCSYENSAF-D----YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT  221 (238)
T ss_dssp             EEECCCTTC-C----EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             EEEEecCCC-C----cEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence            777542211 1    23333221 10000            000011    1112346888999999999999999876

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=97.58  E-value=0.0014  Score=48.74  Aligned_cols=117  Identities=15%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCC------c---eeEEEEEEecCCC------------CCcc---e-EEEEeec
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGT------A---EMTIQLLVQETPE------------APKN---I-RITEESS   69 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~------~---~~~~~~~~~~~P~------------~p~~---~-~~~~~~~   69 (273)
                      +....|.|.++.++|.|.|.|.+.|..|.      .   .....+.+...|.            ++.-   . .+.....
T Consensus        75 ~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G  154 (257)
T 1f3r_B           75 KNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVG  154 (257)
T ss_dssp             TTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTT
T ss_pred             CCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCC
Confidence            45678999999999999999999998651      1   1234566655431            1100   0 1122245


Q ss_pred             cEEEEEEeCCCCCCccceEEEEEEEe--CCCCCC-------------CccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          70 RSLQISWTAPYSGNTAITQYIIQYKS--SEEMWP-------------TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        70 ~~~~l~W~~~~~~~~~~~~y~v~~~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      ..++|.+....... +    .+.|..  .+....             ..............+.|.++.......|.|.|.
T Consensus       155 ~~v~L~C~~~~~~~-~----~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  229 (257)
T 1f3r_B          155 DRVTLSCKGSQNIN-N----YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQY  229 (257)
T ss_dssp             CCEEEEEECSSCCB-T----CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCEEEEEEECCcCC-C----cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEe
Confidence            56778777532211 1    233333  111100             000011111233468888999888888899998


Q ss_pred             CC
Q psy6638         135 NP  136 (273)
Q Consensus       135 ~~  136 (273)
                      |.
T Consensus       230 n~  231 (257)
T 1f3r_B          230 NN  231 (257)
T ss_dssp             SS
T ss_pred             CC
Confidence            75

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=97.57  E-value=0.0048  Score=51.21  Aligned_cols=37  Identities=5%  Similarity=0.121  Sum_probs=28.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      ...|.|.+++.+|.|.|+|.+.|..|.....+.+.+.
T Consensus       102 ~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~v~  138 (527)
T 3qs9_E          102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR  138 (527)
T ss_dssp             EEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC
T ss_pred             EEEEEECcCChhhCeeEEEEEEeccccEEEEEEEEEC
Confidence            4569999999999999999999988766555555443

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.52  E-value=0.00021  Score=45.16  Aligned_cols=43  Identities=16%  Similarity=0.192  Sum_probs=34.6

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP   59 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p   59 (273)
                      .++...+|.|.++..+|.|.|+|.|.|    ....+.+.+..+|..+
T Consensus        60 ~~~~~~~L~I~~v~~~D~G~Y~C~a~~----~~~~a~L~V~~~p~~~  102 (104)
T 2eny_A           60 RQGRKYILVVREAAPSDAGEVVFSVRG----LTSKASLIVRERSGPS  102 (104)
T ss_dssp             EETTEEEEEECSCCTTTCSCEEEEETT----EEEEECEEEECCCSSC
T ss_pred             EcCCEEEEEECCCCHHHCEEEEEEECC----eeEEEEEEEeCCCcCC
Confidence            466778999999999999999998743    4567788888877544

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.51  E-value=0.00029  Score=42.53  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=29.8

Q ss_pred             ecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          12 LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      ..++...+|.|.++.++|.|.|+|.|.|    ....+.+.|..
T Consensus        45 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~l~V~e   83 (84)
T 2lu7_A           45 EQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFLVSVEE   83 (84)
T ss_dssp             EECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEEEEECC
T ss_pred             eecCCeEEEEecCCCCcccEEEEEEECC----EEEEEEEEEEC
Confidence            3467778999999999999999998744    44556666543

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=97.50  E-value=0.00026  Score=48.33  Aligned_cols=43  Identities=30%  Similarity=0.366  Sum_probs=36.4

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA   58 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~   58 (273)
                      ....|.|.++...|.|.|+|.|.|..|.....+.+.+..+|..
T Consensus        96 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~  138 (154)
T 1fhg_A           96 GNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKE  138 (154)
T ss_dssp             CEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC---
T ss_pred             CeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEeCcCcC
Confidence            3578999999999999999999999999888888888877753

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=0.0001  Score=46.08  Aligned_cols=41  Identities=17%  Similarity=0.363  Sum_probs=35.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP   59 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p   59 (273)
                      .|.|.++...|.|.|+|.|.|..|.....+.+.+...|..+
T Consensus        55 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~s~   95 (99)
T 2cr3_A           55 EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG   95 (99)
T ss_dssp             EEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBCSCCSCC
T ss_pred             EEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEecCCCCc
Confidence            79999999999999999999999988777777777666543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=97.49  E-value=0.00038  Score=52.73  Aligned_cols=116  Identities=18%  Similarity=0.197  Sum_probs=68.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCce--eEEEEEEecCCCCC---cceEEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAE--MTIQLLVQETPEAP---KNIRITEESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~--~~~~~~~~~~P~~p---~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      .|.|.++...|.|.|+|.+.|..+...  ..+.+.+..+|...   ............+.|.+.....   +..  .+.|
T Consensus       156 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~---p~p--~i~W  230 (291)
T 1qz1_A          156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGF---PEP--TMSW  230 (291)
T ss_dssp             CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEE---SCC--EEEE
T ss_pred             cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEe---CCC--cEEE
Confidence            699999999999999999998764432  34555555555321   1111222234556666653211   111  2555


Q ss_pred             EeCCCCCCCcc---ceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          94 KSSEEMWPTQP---LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        94 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      ...+.......   ...........+.|.++.......|.|.|.|..|.
T Consensus       231 ~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  279 (291)
T 1qz1_A          231 TKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE  279 (291)
T ss_dssp             EETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             EECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCc
Confidence            54432111010   12223334567889999988899999999998874

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=97.48  E-value=0.004  Score=48.00  Aligned_cols=63  Identities=19%  Similarity=0.287  Sum_probs=41.3

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCce-----eEEEEEEecCCCCCcceE--EEEeeccEEEEEEe
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAE-----MTIQLLVQETPEAPKNIR--ITEESSRSLQISWT   77 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~-----~~~~~~~~~~P~~p~~~~--~~~~~~~~~~l~W~   77 (273)
                      +....|.|.++..+|.|.|+|.+.|..|...     ....+.+..+|.+|.-..  ........+.|.+.
T Consensus        71 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~  140 (327)
T 2wng_A           71 NMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCE  140 (327)
T ss_dssp             CCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEE
T ss_pred             CceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEE
Confidence            3455799999999999999999999866421     245677777776653210  11123445666655

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=97.48  E-value=0.0043  Score=43.16  Aligned_cols=110  Identities=19%  Similarity=0.192  Sum_probs=66.6

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCce-eEEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~-~~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      ...|.|.++..+|.|.|+|.+.|..|... ..+.+.+..+|.   .|...  .......+.|.+.....+ .+.   .+.
T Consensus        59 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~--~~~~g~~~~l~C~~~g~p-~p~---~v~  132 (182)
T 1rhf_A           59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDL--AVPPNAPFQLSCEAVGPP-EPV---TIV  132 (182)
T ss_dssp             EEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCE--EECTTCCEEEEEEEECSS-SCC---EEE
T ss_pred             eEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcce--EecCCCEEEEEeEecCCC-CCC---EEE
Confidence            46899999999999999999999877644 477777777664   23332  222344566666542111 111   355


Q ss_pred             EEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          93 YKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      |...+.....   ..   .....+.+.++.  ....|.+.|.|..|..
T Consensus       133 W~~~~~~~~~---~~---~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~  172 (182)
T 1rhf_A          133 WWRGTTKIGG---PA---PSPSVLNVTGVT--QSTMFSCEAHNLKGLA  172 (182)
T ss_dssp             EEETTEECSC---SE---ESSEEEEECCCS--SCEEEEEEEEETTEEE
T ss_pred             EEcCCeECCC---CC---CCceEEEEeccc--cCeEEEEEEECCCCCc
Confidence            5554432110   00   034567777775  3467888888887743

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=97.47  E-value=0.00015  Score=46.05  Aligned_cols=40  Identities=28%  Similarity=0.371  Sum_probs=34.3

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      .+....|.|.++...|.|.|+|.|.|..|.....+.+.+.
T Consensus        66 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           66 TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEEC
T ss_pred             CCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            4456789999999999999999999999998777777653

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.47  E-value=0.0018  Score=48.25  Aligned_cols=120  Identities=10%  Similarity=0.076  Sum_probs=66.0

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCC---c--eeEEEEEEecCCC---CCcceEEEEeeccEEEEEEeCCCCCCccc
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGT---A--EMTIQLLVQETPE---APKNIRITEESSRSLQISWTAPYSGNTAI   86 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~---~--~~~~~~~~~~~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~   86 (273)
                      +....|.|.++.++|.|.|.|.+.|..|.   .  .....+.+...|.   .|..+  .......++|.+..........
T Consensus        76 ~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~--~v~~G~~v~L~C~~~~~~~~~~  153 (256)
T 1nqb_A           76 SSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSL--PVSLGDQASISCRSSQSIVHSN  153 (256)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEE--EECTTCCEEEEEEESSCCBCTT
T ss_pred             CCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEE--EEecCCcEEEEeEecCcccccc
Confidence            45678999999999999999999998763   1  1234555654443   23222  2234556777776432111100


Q ss_pred             eEEEEEEEe--CCCCCC-------------CccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          87 TQYIIQYKS--SEEMWP-------------TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        87 ~~y~v~~~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ....+.|..  .+....             ..............+.|.++.+.....|.|.|.+.
T Consensus       154 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  218 (256)
T 1nqb_A          154 GNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSH  218 (256)
T ss_dssp             SCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             cceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccC
Confidence            001233332  111100             00011111223446888999999999999998874

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.46  E-value=0.00012  Score=47.52  Aligned_cols=39  Identities=28%  Similarity=0.328  Sum_probs=34.6

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      +|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.
T Consensus        63 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  101 (118)
T 2eo9_A           63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGV  101 (118)
T ss_dssp             EEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECCSC
T ss_pred             EEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeCCC
Confidence            799999999999999999999999988788888876654

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=97.46  E-value=0.00036  Score=43.61  Aligned_cols=40  Identities=25%  Similarity=0.306  Sum_probs=33.8

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      .++....|.|.++..+|.|.|+|.|    |.....+.+.+..+|
T Consensus        58 ~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           58 HKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGP   97 (100)
T ss_dssp             EETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEEEECCSC
T ss_pred             ecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEEEEecCC
Confidence            4666778999999999999999999    667777888887766

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=97.44  E-value=0.00046  Score=44.23  Aligned_cols=52  Identities=17%  Similarity=0.291  Sum_probs=36.2

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      +||.+...  .......|.|.+++++|.|.|.|.+.+........+.|.|...|
T Consensus        61 ~R~~~~~~--~~~~~~sL~I~~~~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~p  112 (113)
T 1zox_A           61 NRVSIRDN--QRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVP  112 (113)
T ss_dssp             TTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEECCSSSCCEEEEEEEEECC-
T ss_pred             CCEEEEEC--CcCCEEEEEEccCCHHHCEEEEEeeEcCCCCccEEEEEEEEcCC
Confidence            45554421  24456789999999999999999998875444556667665444

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=97.43  E-value=0.00073  Score=43.25  Aligned_cols=42  Identities=29%  Similarity=0.569  Sum_probs=35.0

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEA   58 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~   58 (273)
                      .++....|.|.++..+|.|.|+|.|    |.....+.+.+..+|..
T Consensus        68 ~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~~~p~~  109 (113)
T 2edh_A           68 QDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSG  109 (113)
T ss_dssp             EETTEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEEECCCCCS
T ss_pred             ECCCEEEEEECCCChhhCEEEEEEe----CCCCEEEEEEEeCCCCC
Confidence            3566788999999999999999999    66777888888877654

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=97.42  E-value=0.00021  Score=44.18  Aligned_cols=38  Identities=21%  Similarity=0.285  Sum_probs=32.8

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      .|.|.++..+|.|.|+|.|.|..|.....+.+.+..++
T Consensus        52 ~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~   89 (95)
T 4hwu_A           52 YLQIKGATPRDSGLYACTAARTVDSETWIFMVNVTDAA   89 (95)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCC-
T ss_pred             EEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEeCCc
Confidence            79999999999999999999999987777777776554

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=97.41  E-value=0.016  Score=41.17  Aligned_cols=112  Identities=14%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCC-----CceeEEEEEEecCCCCCcceEE----EEeeccEEEEEEeCCCCCCccc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHG-----TAEMTIQLLVQETPEAPKNIRI----TEESSRSLQISWTAPYSGNTAI   86 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g-----~~~~~~~~~~~~~P~~p~~~~~----~~~~~~~~~l~W~~~~~~~~~~   86 (273)
                      ....|.|.++.++|.|.|+|.+.+..+     .....+.+.+...+.+|.- .+    .......++|.+....  . . 
T Consensus        61 ~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i-~~~p~~~v~~G~~v~L~C~~~~--~-~-  135 (201)
T 1nkr_A           61 SKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSL-SAQPGPTVLAGENVTLSCSSRS--S-Y-  135 (201)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEE-EEESCSEECTTCEEEEEEEESS--C-C-
T ss_pred             ceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCce-ecCCCCccCCCCeEEEEEeCCC--C-C-
Confidence            456899999999999999999987531     1233566777665444431 11    1224567888887542  1 1 


Q ss_pred             eEEEEEEEeCCCCCCCcc-ceEEecC-CccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          87 TQYIIQYKSSEEMWPTQP-LKIIVPG-SQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        87 ~~y~v~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ..  +.|...+....... ....... ....+.|.++.  ....|+|.|.+.
T Consensus       136 ~~--~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          136 DM--YHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             SE--EEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             ce--EEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            22  34555443221100 0011111 13456777776  566777777654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=97.41  E-value=0.00034  Score=43.21  Aligned_cols=37  Identities=30%  Similarity=0.250  Sum_probs=29.1

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      .++...+|.|.++..+|.|.|+|.|.|.    ..+..+.+.
T Consensus        55 ~~g~~~~L~I~~v~~~D~G~Y~C~a~n~----~~sa~L~V~   91 (93)
T 1waa_A           55 EDGKKHILILHNCQLGMTGEVSFQAANT----KSAANLKVK   91 (93)
T ss_dssp             EETTEEEEEECSCCGGGCEEEEEEETTE----EEEEEEEEE
T ss_pred             EECCEEEEEECCCChhhCEEEEEEECCC----cEEEEEEEE
Confidence            4667789999999999999999999874    244555554

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=97.41  E-value=0.0062  Score=48.20  Aligned_cols=204  Identities=14%  Similarity=0.099  Sum_probs=102.6

Q ss_pred             EEEEeeeeeCCCE---EEEEEEEcCCCCceeEEEEEE---ecCCCC-----------CcceEEEEeeccEEEEEEeCCCC
Q psy6638          19 ELGIANVLRQDSG---TLSCLATNYHGTAEMTIQLLV---QETPEA-----------PKNIRITEESSRSLQISWTAPYS   81 (273)
Q Consensus        19 ~l~i~~~~~~~~~---~y~~~a~n~~g~~~~~~~~~~---~~~P~~-----------p~~~~~~~~~~~~~~l~W~~~~~   81 (273)
                      .|.|.++...|.|   .|+|.+.|..|..........   ...+..           +...  .......+.|.+.....
T Consensus       162 ~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~G~~v~l~C~~~g~  239 (395)
T 1bih_A          162 NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDM--MAKAGDVTMIYCMYGSN  239 (395)
T ss_dssp             CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSE--EEETTSCEEEEEEEECS
T ss_pred             cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCce--EEECCCcEEEEEEeccC
Confidence            6999999999999   999999999988655332222   111111           1111  22234455665553211


Q ss_pred             CCccceEEEEEEEeCCCCCCCc-cceEEe--cCCccEEEecCCCCCCeEEEEEEEeCCCCCCCC-CcceEEEecCCCCCC
Q psy6638          82 GNTAITQYIIQYKSSEEMWPTQ-PLKIIV--PGSQTSATLQPLLPATQYQVRLLAENPLGMSET-GAELQASTLEEAPNG  157 (273)
Q Consensus        82 ~~~~~~~y~v~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~-s~~~~~~~~~~~p~~  157 (273)
                      .  ..   .+.|...+...... ......  ......+.|.++.......|+|.|.|..|.... +..+.+...+.... 
T Consensus       240 p--~~---~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~-  313 (395)
T 1bih_A          240 P--MG---YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQ-  313 (395)
T ss_dssp             S--CC---CCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEE-
T ss_pred             C--CC---eEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCcccc-
Confidence            1  11   14444433211100 011111  112336889999999999999999998775422 22222222111100 


Q ss_pred             CCee-EEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         158 APRE-VTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       158 ~p~~-~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .|.. +.+.    ....+.|........  .     -.+.|...+..-.. .     .....   ....+|.++.....-
T Consensus       314 ~~~~~~~~~----~g~~~~l~C~~~g~p--~-----p~v~W~~~g~~~~~-~-----~~~~~---~~~L~i~~~~~~d~G  373 (395)
T 1bih_A          314 KPEKVIVVK----QGQDVTIPCKVTGLP--A-----PNVVWSHNAKPLSG-G-----RATVT---DSGLVIKGVKNGDKG  373 (395)
T ss_dssp             CCCSEEEEC----TTSCEEEECEEEEES--C-----CCCEEEETTEECCS-S-----SEEEE---TTEEEESSCCSTTCE
T ss_pred             CCCcceEec----CCCeEEEEEEECccc--C-----CeeEEEECCEECCC-C-----ceEEE---CCEEEEeeCCcccCE
Confidence            1112 2332    223445444432110  0     02444433321000 0     01111   237888899888888


Q ss_pred             EEEEEEecCCCcCC
Q psy6638         237 AIVVRGYNSVGKGP  250 (273)
Q Consensus       237 ~~~v~a~n~~g~~~  250 (273)
                      .|+..|.|..|...
T Consensus       374 ~Y~C~a~N~~G~~~  387 (395)
T 1bih_A          374 YYGCRATNEHGDKY  387 (395)
T ss_dssp             EEEEEEEETTEEEE
T ss_pred             EEEEEEEccCCCce
Confidence            89999999988653

>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A

Probab=97.40  E-value=0.0008  Score=50.50  Aligned_cols=85  Identities=9%  Similarity=0.046  Sum_probs=60.2

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      ..|..+.+..   .++.+.|+|..+.     ..+..|.|+.-........      ..........++|+-.++..|+.|
T Consensus        19 ~~~~~L~at~---~~~~v~LsWs~s~-----~~v~~~~VYRdT~s~~sgr------~ria~~~~st~tytDt~~~~GttY   84 (344)
T 3b4n_A           19 AAQTTLMLSQ---KSDVNYLGWSTDE-----SKVARQEVYRGTTSNPDLR------ERIAVLDAETRTFKDADTNSGLNY   84 (344)
T ss_dssp             -CCEEEEEEE---ETTEEEEEEEECC-----SSEEEEEEEEESSSCGGGC------EEEEEECSSCCEEEECCCCTTCCC
T ss_pred             CCCceeeeec---cCCeEEEEeecCC-----CCeeeEEEEccCCCCCCcc------eEEEeecccccEEEecCcCCCcEE
Confidence            4667888766   8899999999763     3578899987655443211      112223345689999999999999


Q ss_pred             EEEEEEecCCCcCCCCccE
Q psy6638         237 AIVVRGYNSVGKGPFSEPF  255 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~  255 (273)
                      .++|.+.+..|.+..|...
T Consensus        85 yYwVk~~~~ngs~~~Sn~~  103 (344)
T 3b4n_A           85 WYWVDVVSENQAQVVSNAV  103 (344)
T ss_dssp             EEEEEEEETTCCEEECCCE
T ss_pred             EEEEEEecCCCcccCCCcc
Confidence            9999999988876544433

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=97.40  E-value=0.0023  Score=49.53  Aligned_cols=117  Identities=14%  Similarity=0.072  Sum_probs=68.9

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcC--CCCceeE----EEEEEecCCCC------CcceEEEEeeccEEEEEEeCCCCC--C
Q psy6638          18 SELGIANVLRQDSGTLSCLATNY--HGTAEMT----IQLLVQETPEA------PKNIRITEESSRSLQISWTAPYSG--N   83 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~--~g~~~~~----~~~~~~~~P~~------p~~~~~~~~~~~~~~l~W~~~~~~--~   83 (273)
                      ..|.|.++..+|.|.|+|.|.|.  .|.....    +.+.+..+|..      |..  ........+.|.+......  .
T Consensus       182 ~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~--~~v~~G~~~~l~C~~~g~p~~~  259 (329)
T 3oq3_B          182 QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPK--INVTIGEPANITCTAVSTSLLV  259 (329)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSE--EEECTTSCEEEEEEEEETTCCT
T ss_pred             CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCe--eEEecCCCEEEEEEEEECCCCC
Confidence            37999999999999999999987  7655443    56667666532      222  2222344566665532111  1


Q ss_pred             ccceEEEEEEEeCCCC-CCCccceEE---ecC--CccEEEecCCCCCCeE-EEEEEEeCCCCC
Q psy6638          84 TAITQYIIQYKSSEEM-WPTQPLKII---VPG--SQTSATLQPLLPATQY-QVRLLAENPLGM  139 (273)
Q Consensus        84 ~~~~~y~v~~~~~~~~-~~~~~~~~~---~~~--~~~~~~~~~l~~~~~y-~~~v~a~~~~g~  139 (273)
                      .++   .+.|...+.. .........   ...  ....+.|.++...... .|.+.|.|..|.
T Consensus       260 ~~i---~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~  319 (329)
T 3oq3_B          260 DDV---LIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD  319 (329)
T ss_dssp             TCC---EEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCE
T ss_pred             CCc---EEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCc
Confidence            121   4566655432 111111000   011  2346788888888878 889999998874

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=97.39  E-value=0.00072  Score=47.07  Aligned_cols=107  Identities=11%  Similarity=-0.044  Sum_probs=64.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC--CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE--APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~--~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      ...|.|.++..+|.|.|+|.+.|..++.  .+.+.+..+|.  .+...  .......+.|.+.....  .+.  ..+.|.
T Consensus        53 ~~~L~i~~~~~~d~G~Y~C~~~n~~~s~--~~~l~V~~~~~~~~~~~~--~~~~g~~~~l~C~~~~~--~~~--~~~~W~  124 (175)
T 1fnl_A           53 ASSYFIDAATVNDSGEYRCQTNLSTLSD--PVQLEVHIGWLLLQAPRW--VFKEEDPIHLRCHSWKN--TAL--HKVTYL  124 (175)
T ss_dssp             CSEEEESSCCGGGCEEEEEECSSSCCCC--CEEEEEECSSEEEECSCS--EEETTCCEEEEEEECTT--CCC--EEEEEE
T ss_pred             ceEEEEeCCCcccCEEEEEEeeCCcccc--cEEEEEeCCCceeeCCCc--eecCCCCEEEEEEcCCC--CCc--eEEEEE
Confidence            4589999999999999999999865543  44444442221  00111  12234556777654311  122  245555


Q ss_pred             eCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          95 SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      ..+..       .........+.|.++.......|.+.|.|..|
T Consensus       125 k~g~~-------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  161 (175)
T 1fnl_A          125 QNGKD-------RKYFHHNSDFHIPKATLKDSGSYFCRGLVGSK  161 (175)
T ss_dssp             ETTEE-------EEEEEECCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ECCeE-------ccCCCCCCEEEEcccChhhCeEEEEEEEcCCC
Confidence            44321       11112345688888888888899999998654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=97.39  E-value=0.00093  Score=48.15  Aligned_cols=115  Identities=15%  Similarity=0.191  Sum_probs=66.7

Q ss_pred             EEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEec-CCC---CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          20 LGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQE-TPE---APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        20 l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~-~P~---~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      +.|.++...|.|.|+|.+.|..|.... ...+.+.. +|.   .|...  .......+.|.+..... . +..  .+.|.
T Consensus        71 l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~--~~~~g~~v~l~C~~~~g-~-p~~--~v~W~  144 (217)
T 2vr9_A           71 RTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDT--RVAKGETALLECGPPKG-I-PEP--TLIWI  144 (217)
T ss_dssp             SCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCE--EECTTSCEEECCBCCCE-E-SCC--EEEEE
T ss_pred             EEeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCcc--EEcCCCeEEEEEECCCC-C-CCC--eEEEE
Confidence            368899999999999999998876533 45555543 222   22222  22345566776654211 1 111  24454


Q ss_pred             eCCCCCCC-------ccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCC
Q psy6638          95 SSEEMWPT-------QPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSE  141 (273)
Q Consensus        95 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~  141 (273)
                      ..+.....       ....... .....+.|.++.......|+|.|.|..|...
T Consensus       145 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  197 (217)
T 2vr9_A          145 KDGVPLDDLKAMSFGASSRVRI-VDGGNLLISNVEPIDEGNYKCIAQNLVGTRE  197 (217)
T ss_dssp             ETTEEECCCCCC---CCCSEEE-ETTTEEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             ECCcCCCcccccccccCCcEEe-cCCCcEEEeeCCHHHCeEEEEEEEcccceec
Confidence            43321100       0011111 1234688899999999999999999988544

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=97.38  E-value=0.0084  Score=48.20  Aligned_cols=46  Identities=22%  Similarity=0.172  Sum_probs=33.6

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCc-eeEEEEEEecCCCCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQETPEAP   59 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~-~~~~~~~~~~~P~~p   59 (273)
                      .+....|.|.++..+|.|.|+|.|.|..|.. .....+.+..+..+|
T Consensus        71 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P  117 (438)
T 1qgc_4           71 SRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAP  117 (438)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCC
T ss_pred             cCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCC
Confidence            4556789999999999999999999987743 234555564433344

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=97.38  E-value=0.0054  Score=47.06  Aligned_cols=114  Identities=12%  Similarity=0.122  Sum_probs=61.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCc-----eeEEEEEEecCCCCCcceEEE----EeeccEEEEEEeCCCCCCccc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTA-----EMTIQLLVQETPEAPKNIRIT----EESSRSLQISWTAPYSGNTAI   86 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~-----~~~~~~~~~~~P~~p~~~~~~----~~~~~~~~l~W~~~~~~~~~~   86 (273)
                      ....|.|.++..+|.|.|+|.|.|..|..     ...+.+.+...+.+|.- ...    ......++|.+....    +.
T Consensus       172 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i-~~~~~~~v~~G~~v~L~C~~~~----~~  246 (316)
T 3vh8_G          172 SKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSL-SAQPGPKVQAGESVTLSCSSRS----SY  246 (316)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEE-EEESCSCCCTTSCCEEEEEESS----CC
T ss_pred             ceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeE-EeCCCCeecCCCcEEEEEECCC----CC
Confidence            45689999999999999999999988752     33556666665544432 111    123445666666431    11


Q ss_pred             eEEEEEEEeCCCCCCCccceEEecC--CccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          87 TQYIIQYKSSEEMWPTQPLKIIVPG--SQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        87 ~~y~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      .  .+.|...+..............  ....+.|..+.  ....|+|.|.|..+
T Consensus       247 ~--~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~  296 (316)
T 3vh8_G          247 D--MYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHS  296 (316)
T ss_dssp             S--EEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTB
T ss_pred             c--EEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCC
Confidence            1  2455544432110000001111  12457777777  66788888988655

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=97.37  E-value=0.00028  Score=45.22  Aligned_cols=47  Identities=26%  Similarity=0.280  Sum_probs=36.4

Q ss_pred             eEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCC-ceeEEEEEEec
Q psy6638           5 YTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGT-AEMTIQLLVQE   54 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~-~~~~~~~~~~~   54 (273)
                      |.-|..+..+|   +|.|.+++.+|.|.|+|.+.+..+. ....+.+.+..
T Consensus        62 ~~gR~~~~~ng---SL~I~nvt~~D~G~Ytc~v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           62 YSGREIIYPNA---SLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             CCSCEEECTTS---CEEECSCCGGGCEEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             cCCcEEEecCC---cEEEccCcccCCeEEEEEEEeCCCcEEEEEEEEEEec
Confidence            34466667777   7999999999999999999998764 45566666543

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=97.36  E-value=2.7e-05  Score=67.69  Aligned_cols=221  Identities=15%  Similarity=0.087  Sum_probs=0.0

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE   97 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~   97 (273)
                      +.|.|.++  +|.|.|+|.|.|..|.....+.+.+..+|...............+.|.+.......     -.+.|...+
T Consensus       515 ~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~~~~p~-----~~v~W~k~~  587 (772)
T 3v2a_R          515 STLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTF-----ENLTWYKLG  587 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceeeccCCcccccCCceEEEEeccCCCC-----CCcEEEEcC
Confidence            57777776  68999999999999988887777777655422211112223344555554321110     112222211


Q ss_pred             CC--------------------CCCccceE-EecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEecCCCCC
Q psy6638          98 EM--------------------WPTQPLKI-IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus        98 ~~--------------------~~~~~~~~-~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      ..                    |....... ........+.|.++.......|+|.|.|..|....+....+......||
T Consensus       588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P  667 (772)
T 3v2a_R          588 PQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAP  667 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCC
Confidence            10                    00000000 0001123477888888889999999999655332222222222111111


Q ss_pred             C---CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         157 G---APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       157 ~---~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .   .+.+..+.    ....+.|.......+       .-.|.|...+..-....     .... ......+.|.++...
T Consensus       668 ~~~~~~~~~~v~----~g~~~~l~C~~~g~P-------~p~v~W~k~g~~l~~~~-----~~~~-~~~~~~L~I~~v~~~  730 (772)
T 3v2a_R          668 TITGNLENQTTS----IGESIEVSCTASGNP-------PPQIMWFKDNETLVEDS-----GIVL-KDGNRNLTIRRVRKE  730 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeecCCCceEEe----CCCCEEEEEEeCccC-------CCeEEEEECCeECcCCC-----CeEE-cCCCcEEEECcCCHH
Confidence            1   11122221    122334433322110       01333333322110000     0000 011346778888888


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      ..-.|+..|.|..|....+..+.+.-+++
T Consensus       731 D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~  759 (772)
T 3v2a_R          731 DEGLYTCQACSVLGCAKVEAFFIIEGAQE  759 (772)
T ss_dssp             -----------------------------
T ss_pred             HCEEEEEEEEeCCcceeEEEEEEEECCCC
Confidence            88889999999999866555555554433

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=97.36  E-value=0.0013  Score=50.47  Aligned_cols=112  Identities=13%  Similarity=0.088  Sum_probs=65.8

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeE--EEEEEecCCC----CCcceEEEEeeccEEEEEEeCCCCCCccceEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMT--IQLLVQETPE----APKNIRITEESSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~--~~~~~~~~P~----~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      +.|.|......|.|.|+|.|.|..+.....  +.+.+..+|.    ++...  .......+.|.+...  +....  ..+
T Consensus       177 s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~--~~~~g~~v~l~C~~~--g~P~p--~~v  250 (313)
T 4fqp_A          177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNN--WYLGQNEATLTCDAR--SNPEP--TGY  250 (313)
T ss_dssp             EEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSC--EETTCCCEEEEEEEE--EESCC--CEE
T ss_pred             eeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccce--eecCCCeEEEEEEec--CCCCC--cEE
Confidence            468889999999999999999987766543  3444443442    11111  111233455555431  11011  134


Q ss_pred             EEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          92 QYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      .|...+.....   ....  ....+.|.++.......|+|.|.|..|..
T Consensus       251 ~W~~~~~~l~~---~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  294 (313)
T 4fqp_A          251 NWSTTMGPLPP---FAVA--QGAQLLIRPVDKPINTTLICNVTNALGAR  294 (313)
T ss_dssp             EEEETTBSCCT---TEEE--ETTEEEECCCSSCCEEEEEEEEECSSCEE
T ss_pred             EEEECCEECCC---ceEE--eCCEEEECcCChhhCEEEEEEEEeCCCcE
Confidence            55555443221   1111  23468899999999999999999998844

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=97.34  E-value=0.0045  Score=45.95  Aligned_cols=27  Identities=7%  Similarity=0.164  Sum_probs=24.2

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .+....|.|.+++++|.|.|.|.+.|.
T Consensus        81 ~~~~~~L~I~~v~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           81 SANTAYMELRSLRSADTAVYYCARVGE  107 (256)
T ss_dssp             TTTEEEEEECSCCGGGCEEEEEEECCC
T ss_pred             CCCEEEEEECCCCcccCEEEEEeEEec
Confidence            355778999999999999999999986

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.33  E-value=0.00067  Score=53.03  Aligned_cols=117  Identities=18%  Similarity=0.137  Sum_probs=70.0

Q ss_pred             CcEEEEEEeeeeeCCCE-EEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          15 GMISELGIANVLRQDSG-TLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~-~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      .....|.|.++...|.| .|+|.|.|..|.....+.+.+..+|..   ..........+.|.+.....   +..  .+.|
T Consensus       209 ~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i---~~~~~~~g~~v~l~C~~~g~---P~p--~i~W  280 (347)
T 2ifg_A          209 LPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV---QLHTAVEMHHWCIPFSVDGQ---PAP--SLRW  280 (347)
T ss_dssp             SSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE---EECCCEESSSEEEEEEEEEE---SCC--EEEE
T ss_pred             cccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee---eeccCccCceEEEEEEeeec---CCC--cEEE
Confidence            34668999999999999 999999999988877777766665543   00111223445555543211   111  2444


Q ss_pred             EeCCCCCCCccc-eEEec-------CCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          94 KSSEEMWPTQPL-KIIVP-------GSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        94 ~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      ...+........ .....       .....+.|.++.......|++.|.|..|.
T Consensus       281 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~  334 (347)
T 2ifg_A          281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ  334 (347)
T ss_dssp             EETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCc
Confidence            443321110101 11000       11335788888888899999999998874

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.33  E-value=0.012  Score=44.42  Aligned_cols=116  Identities=9%  Similarity=0.047  Sum_probs=64.6

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCc-----eeEEEEEEecCCC------------CCcce----EEEEeeccEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTA-----EMTIQLLVQETPE------------APKNI----RITEESSRSLQ   73 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~-----~~~~~~~~~~~P~------------~p~~~----~~~~~~~~~~~   73 (273)
                      +....|.|.+++++|.|.|.|.+.|..|..     .....+.+...|.            ++.-.    .+.......++
T Consensus       102 ~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~  181 (282)
T 1qok_A          102 SNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVT  181 (282)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEE
T ss_pred             CCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEE
Confidence            346789999999999999999999987621     1234566665442            11110    11223455677


Q ss_pred             EEEeCCCCCCccceEEEEEEEe--CCCCC-------------CCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          74 ISWTAPYSGNTAITQYIIQYKS--SEEMW-------------PTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        74 l~W~~~~~~~~~~~~y~v~~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      |.+...... .     .+.|..  .+...             ...............+.|.++.......|.|.|.+.
T Consensus       182 L~C~~~~~~-~-----~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  253 (282)
T 1qok_A          182 ITCSASSSV-S-----YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSS  253 (282)
T ss_dssp             EEEEESSCC-S-----CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEecCCC-c-----eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeC
Confidence            777653222 1     223322  11110             000011111223446888999999989999998764

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=97.33  E-value=0.0036  Score=47.17  Aligned_cols=117  Identities=16%  Similarity=0.113  Sum_probs=67.1

Q ss_pred             EEEEeeeeeCCCEEEEEEEE-cCCCCceeEEEEEEecCCC-CCcceEEE-----EeeccEEEEEEeCCCCCCccceEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLAT-NYHGTAEMTIQLLVQETPE-APKNIRIT-----EESSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~-n~~g~~~~~~~~~~~~~P~-~p~~~~~~-----~~~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      .|.|.++..+|.|.|+|.+. +..+.....+.+.+...+. +|. +...     ......+.|.+....  ..+.  ..+
T Consensus       145 ~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~-i~~~~~~~~~~~g~~~~l~C~~~~--~~p~--~~i  219 (289)
T 3ejj_X          145 GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQ-IKLEPSKLVRIRGEAAQIVCSATN--AEVG--FNV  219 (289)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCE-EEEESSSEECCSSSCEEEEEEEEE--SSSC--CEE
T ss_pred             CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCe-EEecCCceEEEeCCcEEEEEEeCC--CCCc--eEE
Confidence            69999999999999999999 4444444567777764332 332 2111     123445555554321  0011  235


Q ss_pred             EEEeCCCCCCCccceEEec---CCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          92 QYKSSEEMWPTQPLKIIVP---GSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      .|...+.............   .....+.|.++.......|.+.|.|..|..
T Consensus       220 ~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  271 (289)
T 3ejj_X          220 ILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTR  271 (289)
T ss_dssp             EEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEE
T ss_pred             EEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCc
Confidence            5555432111000000000   013468888999999999999999998843

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=97.33  E-value=0.0012  Score=47.68  Aligned_cols=117  Identities=13%  Similarity=0.054  Sum_probs=61.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEecC--CC----CCcceEEEEeeccEEEEEEeCCCCCCccceEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQET--PE----APKNIRITEESSRSLQISWTAPYSGNTAITQYII   91 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~~--P~----~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v   91 (273)
                      .|.|.++..+|.|.|+|.|.|..+.... .+.+.+...  |.    ++..+  .......++|.+.......   ..+.+
T Consensus        65 ~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~--~v~~G~~v~L~C~~~g~p~---~~~~i  139 (213)
T 2x1w_L           65 GFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGI--ELSVGEKLVLNCTARTELN---VGIDF  139 (213)
T ss_dssp             EEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCE--EEETTCCEEEEEEEEECTT---BCCEE
T ss_pred             cEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCe--EEcCCCCEEEEEEEECCCC---CceEE
Confidence            5999999999999999999985444332 245555331  10    11111  2223445555555321111   11234


Q ss_pred             EEEeCCCCCCCccc-eEEe--------cCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          92 QYKSSEEMWPTQPL-KIIV--------PGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        92 ~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      .|...+........ ....        ......+.|.++.......|.|.|.|..|..
T Consensus       140 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~  197 (213)
T 2x1w_L          140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK  197 (213)
T ss_dssp             EEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             EEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE
Confidence            55444332111000 0000        0112358889999999999999999987743

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=97.33  E-value=0.00029  Score=43.84  Aligned_cols=35  Identities=37%  Similarity=0.437  Sum_probs=31.1

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      .|.|.++..+|.|.|+|.|.|..|.....+.+.+.
T Consensus        63 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   97 (98)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEeCCChhhCEEEEEEecCCCCccccEEEEEEe
Confidence            79999999999999999999999988777776653

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=97.33  E-value=0.00069  Score=44.32  Aligned_cols=58  Identities=14%  Similarity=0.297  Sum_probs=37.2

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcce
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI   62 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~   62 (273)
                      +||.+..  ........|.|.+++++|.|.|.|............+.|.|..+|.+|...
T Consensus        62 ~R~~~~~--~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~~~~~~~~v~L~V~~~~~~~~~~  119 (124)
T 2nms_A           62 DRVSIKD--NQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEET  119 (124)
T ss_dssp             TTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC------
T ss_pred             CCEEEEE--cCcCCEEEEEEeCCCHHHCEEEEEEEEcCCCCccEEEEEEEeCCCcCCCCc
Confidence            4555432  123557889999999999999999988654333346777777777766543

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=97.33  E-value=0.00046  Score=45.51  Aligned_cols=52  Identities=25%  Similarity=0.388  Sum_probs=37.4

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCc----eeEEEEEEecCC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTA----EMTIQLLVQETP   56 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~----~~~~~~~~~~~P   56 (273)
                      +||.+..  ...+..+.|.|.+++++|.|.|.|.+.+..+..    ...+.|.|...|
T Consensus        62 ~Rf~~~~--~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~  117 (129)
T 3rrq_A           62 CRFRVTQ--LPNGRDFHMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAELRVTERR  117 (129)
T ss_dssp             CCEEEEE--CTTSSEEEEEESSCCGGGCEEEEEEEEECGGGCEEEECCCEEEEEECCC
T ss_pred             CcEEEEE--cCCCCEEEEEECCCChhHCEEEEEEEEecCCCceeeEeceEEEEEecCc
Confidence            3555432  134567899999999999999999999876654    335677776544

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=97.32  E-value=0.0039  Score=46.30  Aligned_cols=116  Identities=11%  Similarity=0.037  Sum_probs=62.4

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCc----eeEEEEEEecC--------------CC---CCcceEEEEeeccEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTA----EMTIQLLVQET--------------PE---APKNIRITEESSRSLQ   73 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~----~~~~~~~~~~~--------------P~---~p~~~~~~~~~~~~~~   73 (273)
                      +....|.|.+++++|.|.|.|.+.|..+..    .....+.+..+              |.   .|..  +.......++
T Consensus        83 ~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~--~~v~~G~~v~  160 (257)
T 3gkz_A           83 KNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAI--MSASPGEKVT  160 (257)
T ss_dssp             GTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSE--EEECTTCCEE
T ss_pred             CceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCce--EEEeCCCcEE
Confidence            346689999999999999999999873222    22345555543              11   1111  2223456677


Q ss_pred             EEEeCCCCCCccceEEEEEEEe--CCCCCC-------------CccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          74 ISWTAPYSGNTAITQYIIQYKS--SEEMWP-------------TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        74 l~W~~~~~~~~~~~~y~v~~~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      |.+....... +.   .+.|..  .+....             ..............+.|.++.......|.|.+.+.
T Consensus       161 L~C~~~~~~~-~~---~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~  234 (257)
T 3gkz_A          161 LTCSASSSVS-SS---HLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSS  234 (257)
T ss_dssp             EEEEESSCCC-GG---GEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEEccCcc-ce---EEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccC
Confidence            7776432211 10   122221  111000             00001111223345888999999998999988764

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.32  E-value=0.0065  Score=45.06  Aligned_cols=116  Identities=12%  Similarity=0.091  Sum_probs=62.6

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCC----CCceeEEEEEEecCCC-------------CCcce----EEEEeeccEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYH----GTAEMTIQLLVQETPE-------------APKNI----RITEESSRSLQ   73 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~----g~~~~~~~~~~~~~P~-------------~p~~~----~~~~~~~~~~~   73 (273)
                      +....|.|.++.++|.|.|.|.+.|..    +.......+.+...+.             +|.-.    .+.......++
T Consensus        78 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~  157 (256)
T 3umt_A           78 SSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVS  157 (256)
T ss_dssp             GTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEE
T ss_pred             CCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEE
Confidence            346679999999999999999999872    2222345566653210             11111    02223455677


Q ss_pred             EEEeCCCCCCccceEEEEEEEeC--CCC--------------CCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          74 ISWTAPYSGNTAITQYIIQYKSS--EEM--------------WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        74 l~W~~~~~~~~~~~~y~v~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      |.+.........     +.|...  +..              .. .............+.|.++.......|.|.+.+.
T Consensus       158 L~C~~~~~~~~~-----v~W~k~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~  230 (256)
T 3umt_A          158 ITCRASQDIGSN-----LNWLQQKPDGTIKRLIYATSSLDSGVP-KRFSGSRSGSDYSLTISSLESEDFVDYYCLQYAS  230 (256)
T ss_dssp             EEEEESSCCTTC-----EEEEEECTTCCEEEEEETTTEECTTSC-TTEEEEEETTEEEEEECSCCGGGCSEEEEEECSS
T ss_pred             EEEEEecCCCcE-----EEEEEECCCCCcEEEEEeccccCCccC-CCEEEecCCCEEEEEECCCChhHCEEEEEEEeeC
Confidence            777643221111     222211  100              00 0011112223445888999988888888888774

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=97.32  E-value=0.0025  Score=47.29  Aligned_cols=43  Identities=16%  Similarity=0.217  Sum_probs=30.2

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCce---eEEEEEEecCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAE---MTIQLLVQETP   56 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~---~~~~~~~~~~P   56 (273)
                      .+....|.|.++..+|.|.|.|.+.+..+...   ....+.+..+|
T Consensus        70 ~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~  115 (256)
T 3ux9_B           70 SGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSG  115 (256)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC---
T ss_pred             cCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCC
Confidence            45567899999999999999999998654321   24455665544

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=97.31  E-value=0.0035  Score=46.59  Aligned_cols=29  Identities=24%  Similarity=0.200  Sum_probs=25.6

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      ......|.|.++.++|.|.|.|.+.|..+
T Consensus        72 ~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~  100 (256)
T 3tf7_C           72 SDSSFHLRKASVHRSDSAVYFCAVSAKGT  100 (256)
T ss_dssp             TTTEEEEEESSCCGGGCSEEEEEEECTTC
T ss_pred             CCCEEEEEECCCCcccCEEEEEEEecCCC
Confidence            45577899999999999999999999765

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=97.31  E-value=0.0046  Score=44.32  Aligned_cols=115  Identities=16%  Similarity=0.109  Sum_probs=65.6

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCc----eeEEEEEEecCCCCCcceEEE-EeeccEEEEEEeCCCC-CCccceEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTA----EMTIQLLVQETPEAPKNIRIT-EESSRSLQISWTAPYS-GNTAITQYI   90 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~----~~~~~~~~~~~P~~p~~~~~~-~~~~~~~~l~W~~~~~-~~~~~~~y~   90 (273)
                      ...|.|.+++.+|.|.|.|.+.+..+..    ...+.+.+..+|..|.-.... ......++|.+..... ...+.  -.
T Consensus        81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p~--p~  158 (214)
T 2zg1_A           81 NCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPP--LT  158 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSSC--CE
T ss_pred             eEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCCC--ce
Confidence            4479999999999999999999875322    135677777766554321111 1234567888876421 00111  13


Q ss_pred             EEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          91 IQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      +.|...+.... ...    ......+.|..........|.|.|.|..+
T Consensus       159 v~W~~~~~~~~-~~~----~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~  201 (214)
T 2zg1_A          159 FSWTGNALSPL-DPE----TTRSSELTLTPRPEDHGTNLTCQMKRQGA  201 (214)
T ss_dssp             EEEESSTTSSS-CSS----CCCSSEEEECCCTTCCSCEEEEEEECC--
T ss_pred             EEEeCCCCccC-CCC----ceeEEEEEEecccHHcCcEEEEEEEeCCC
Confidence            55655443211 000    12345667776666666677888888654

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.31  E-value=0.0042  Score=45.84  Aligned_cols=41  Identities=24%  Similarity=0.221  Sum_probs=29.8

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEec
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQE   54 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~   54 (273)
                      .+....|.|.++..+|.|.|.|.+.|..+.... ...+.+..
T Consensus        70 ~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~  111 (250)
T 3esu_F           70 SGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRR  111 (250)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEEC
Confidence            455678999999999999999999987654322 33455543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=97.30  E-value=0.00048  Score=50.91  Aligned_cols=40  Identities=23%  Similarity=0.329  Sum_probs=33.7

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      ..|.|.++..+|.|.|+|.+.+..|.......+.+..+|.
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~  121 (248)
T 3pv7_A           82 ASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPA  121 (248)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCE
T ss_pred             EEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCc
Confidence            3599999999999999999999887766777787777654

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=97.30  E-value=0.0017  Score=46.81  Aligned_cols=64  Identities=19%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCC--ceeEEEEEEecCCCCCcceEEEE-----eeccEEEEEEeC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGT--AEMTIQLLVQETPEAPKNIRITE-----ESSRSLQISWTA   78 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~--~~~~~~~~~~~~P~~p~~~~~~~-----~~~~~~~l~W~~   78 (273)
                      .+..+.|.|.++..+|.|.|+|.+.|..|.  ......+.+...+.+|.-. +..     .....+.|.+..
T Consensus        68 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~-~~~~~~~~~~g~~v~L~C~~  138 (216)
T 2xzc_L           68 SGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVF-IFPPSDEQLKSGTASVVCLL  138 (216)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEE-EECCCHHHHHTTEEEEEEEE
T ss_pred             cCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceE-EeCCChhhccCCcEEEEEEE
Confidence            455678999999999999999999998761  1223455565444444322 211     123466666653

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.30  E-value=0.005  Score=42.93  Aligned_cols=115  Identities=12%  Similarity=0.092  Sum_probs=66.7

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcce-EEEEeeccEEEEEEeCCCCCCccceEEEEEEEe
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI-RITEESSRSLQISWTAPYSGNTAITQYIIQYKS   95 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~-~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~   95 (273)
                      ...|.|.  ...|.|.|+|.+.|.   ....+.+.+..+|...... .........+.|.+.....  .+..  .+.|..
T Consensus        50 ~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~--p~~~--~i~W~~  120 (184)
T 3b5h_A           50 KTEFKVD--SDDQWGEYSCVFLPE---PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESV--PPVT--DWAWYK  120 (184)
T ss_dssp             EEEEEEC--GGGCCEEEEEEEEST---TSCEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCS--SCCC--EEEEEE
T ss_pred             cEEEEEe--chhhCeEEEEEEECC---cCcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCC--CCCC--eEEEEE
Confidence            4467666  689999999999982   3356677777777532211 1223345667777765422  1122  234444


Q ss_pred             ---CCCC-CCC---ccceEEecCCccEEEecCCC-CCCeEEEEEEEeCCCCCC
Q psy6638          96 ---SEEM-WPT---QPLKIIVPGSQTSATLQPLL-PATQYQVRLLAENPLGMS  140 (273)
Q Consensus        96 ---~~~~-~~~---~~~~~~~~~~~~~~~~~~l~-~~~~y~~~v~a~~~~g~~  140 (273)
                         .+.. ...   .............+.|.++. ......|.+.|.|..|..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~  173 (184)
T 3b5h_A          121 ITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD  173 (184)
T ss_dssp             CCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEE
T ss_pred             cCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcc
Confidence               1110 000   01112222334578889998 888899999999988743

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=97.29  E-value=0.00026  Score=45.85  Aligned_cols=42  Identities=26%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             EEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEEecCCCCCc
Q psy6638          19 ELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLVQETPEAPK   60 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~~~~P~~p~   60 (273)
                      .|.|.+++.+|.|.|+|.+.+ ..|.....+.|.|..+|.+..
T Consensus        72 sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V~~pp~~~~  114 (117)
T 3q0h_A           72 GLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEH  114 (117)
T ss_dssp             CEEECSCCGGGCEEEEEEEEEETTCCEEEEEEEEEECC-----
T ss_pred             EEEEeeCChhhCEEEEEEEEECCCCCeEEEEEEEEEccCcccc
Confidence            799999999999999999754 567777888999998887653

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=97.29  E-value=0.0013  Score=46.29  Aligned_cols=107  Identities=14%  Similarity=0.129  Sum_probs=62.5

Q ss_pred             EecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCcee--EEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceE
Q psy6638          11 VLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEM--TIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQ   88 (273)
Q Consensus        11 ~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~--~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~   88 (273)
                      +..+|   .|.|.++.++|.|.|+|.+.|..|....  .+.+.+..++..|.-   .. ....+.|.+......  ..  
T Consensus        62 ~~~ng---sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i---~~-~~~~v~L~C~~~~~p--~~--  130 (182)
T 1hnf_A           62 LFKNG---TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKI---SW-TCINTTLTCEVMNGT--DP--  130 (182)
T ss_dssp             ECTTS---CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCCEE---EE-ETTTTEEEEECSSCS--SC--
T ss_pred             ECCCC---CEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCCEE---EE-ccCcEEEEeEccCCC--CC--
Confidence            34455   7999999999999999999998887643  556777665545531   11 222466666653211  12  


Q ss_pred             EEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          89 YIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        89 y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                       .+.|...+...         ......+.+. ........|.+.|.|..|.
T Consensus       131 -~~~W~~~g~~l---------~~~~~~i~~~-~~~~d~G~Y~C~a~N~~~~  170 (182)
T 1hnf_A          131 -ELNLYQDGKHL---------KLSQRVITHK-WTTSLSAKFKCTAGNKVSK  170 (182)
T ss_dssp             -EEEEEESSCEE---------EEESSCEEEE-CCSCEEEEEEEEEECSSCE
T ss_pred             -EEEEEECCEEC---------CCCCcEEEEe-cccCCCcEEEEEEEeCCCC
Confidence             24444443211         0111122222 1245567889999998774

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=97.27  E-value=0.0025  Score=53.66  Aligned_cols=102  Identities=20%  Similarity=0.313  Sum_probs=62.6

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccce--------ee--eeeeEE----ecCCcc
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS--------SY--TLKSVE----LDNQYE  222 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~--------~~--~~~~~~----~~~~~~  222 (273)
                      ..|.++.+...+.+.+++.|.|..|..   .+.+..|.|+.-...-......        .+  .+....    ......
T Consensus        36 ~~p~~~~~~t~~~~~~si~l~~~~p~~---~~~~~~y~vy~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (608)
T 2uvf_A           36 DAPQQLQVPTLAYDESSIVLVWKAPED---TRKIVDYQIFSAGKLLGKASDNNDNFSPAKPYIDHFYVNDKDNFQHKIVM  112 (608)
T ss_dssp             CCCEEEECCTTCBCSSCEEEEEECCSC---CTTEEEEEEEETTEEEEEHHHHHHHHCSSHHHHHHHHHTCGGGCSCCCCC
T ss_pred             CCCCceEeeecccCCcEEEEEEeCCcc---ccccccEEEEECCEEeEeeccccccccccccccccccccccccccceeee
Confidence            367788874322578899999999976   5677889988622100000000        00  000000    000013


Q ss_pred             cEEEcCCCCccceEEEEEEEecCCCc-CCCCccEEEEcCC
Q psy6638         223 GELRIPGLTPYTKYAIVVRGYNSVGK-GPFSEPFIARTNE  261 (273)
Q Consensus       223 ~~~~i~~L~p~~~Y~~~v~a~n~~g~-~~~s~~~~~~t~~  261 (273)
                      .++++.+|+|++.|.|+|.+.+..|. +..++.+.+.|..
T Consensus       113 ~~~~v~~L~p~T~Y~~~v~a~d~~G~~s~ds~~V~~~T~~  152 (608)
T 2uvf_A          113 QNFTVIGLKPETSYQFTVKAQYADGSLSVASKPITAKTSA  152 (608)
T ss_dssp             CEEEECSCCTTCEEEEEEEEEETTSCBCCCCCCEEEECCC
T ss_pred             eeEEecCCCCCCEEEEEEEEecCCCcccccchhccccccc
Confidence            57899999999999999999987775 4456677777654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=97.27  E-value=0.00028  Score=51.86  Aligned_cols=46  Identities=35%  Similarity=0.432  Sum_probs=34.3

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN   61 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~   61 (273)
                      ..+.|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.+|..
T Consensus       180 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~  225 (241)
T 3grw_A          180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE  225 (241)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---------
T ss_pred             CceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCcc
Confidence            3568999999999999999999999999988999999888887664

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.26  E-value=0.00023  Score=44.40  Aligned_cols=37  Identities=35%  Similarity=0.526  Sum_probs=31.5

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ....|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus        62 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           62 GVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             TEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEEE
T ss_pred             CeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEE
Confidence            3568999999999999999999999998776666554

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=97.26  E-value=0.00035  Score=46.39  Aligned_cols=53  Identities=21%  Similarity=0.251  Sum_probs=34.6

Q ss_pred             cceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCC----ceeEEEEEEecCCCC
Q psy6638           2 FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGT----AEMTIQLLVQETPEA   58 (273)
Q Consensus         2 ~~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~----~~~~~~~~~~~~P~~   58 (273)
                      ++||.+..    ++..+.|.|.+++++|.|.|.|.+.|..|.    ......+.|...|.+
T Consensus        65 ~~r~~~~~----~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~g~gt~L~V~~~p~~  121 (133)
T 3khq_A           65 EGRIVQTQ----NGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTL  121 (133)
T ss_dssp             TTTEEEEE----ETTEEEEEECSCCGGGCEEEEEEESSCC-------CCCEEEEEC-----
T ss_pred             CCCEEEEc----CCCEEEEEECCCChHHCEEEEEEEEeCCCCcceeECCCEEEEEEecccc
Confidence            35665542    456789999999999999999999998763    123556677665543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=97.26  E-value=0.001  Score=47.64  Aligned_cols=113  Identities=16%  Similarity=0.197  Sum_probs=65.7

Q ss_pred             EEEeeeeeCCCEEEEEEEEcCCCCce-eEEEEEEecCCC----CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEE
Q psy6638          20 LGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETPE----APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYK   94 (273)
Q Consensus        20 l~i~~~~~~~~~~y~~~a~n~~g~~~-~~~~~~~~~~P~----~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~   94 (273)
                      +.|.++...|.|.|+|.+.|..|... ....+.+...|.    .|...  .......+.|.+..... . +..  .+.|.
T Consensus        74 l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~--~~~~g~~~~l~C~~~~~-~-p~~--~v~W~  147 (212)
T 2v9r_A           74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV--MVAVGEPAVMECQPPRG-H-PEP--TISWK  147 (212)
T ss_dssp             CCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCE--EEETTSCEEEECBCCCE-E-SCC--EEEEE
T ss_pred             EEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCce--EecCCCcEEEEEecCCC-C-CCC--EEEEE
Confidence            34456789999999999999887653 355566644332    22222  23345667777764211 1 111  35555


Q ss_pred             eCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          95 SSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ..+............  ....+.|.++.......|.|.|.|..|..
T Consensus       148 ~~~~~l~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~  191 (212)
T 2v9r_A          148 KDGSPLDDKDERITI--RGGKLMITYTRKSDAGKYVCVGTNMVGER  191 (212)
T ss_dssp             ETTEEECTTSTTEEE--ETTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             ECCccCCCCcceEEc--cCCeEEEeeCCHhhCeeEEEEEecccCce
Confidence            443211111111111  23468888888888899999999987743

>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha; GM-CSF, receptor complex, dodecamer, disease mutation, glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}

Probab=97.24  E-value=0.00048  Score=44.13  Aligned_cols=95  Identities=17%  Similarity=0.267  Sum_probs=55.9

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCC-ccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRES-WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~-~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      .||.++++..   ..+.+.|+|+.|.... ....-..|+|++..........    ...........+.+.+..+.|...
T Consensus        19 ~PP~nvtv~~---~~s~~~IqW~~P~s~~~~~~~cF~Yev~I~~~~~~~~~~----~q~~~~~~~~~~~~~~~~~~~~~~   91 (120)
T 3cxe_C           19 NPPSNVTVRC---NTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTE----NLLINVSGDLENRYNFPSSEPRAK   91 (120)
T ss_dssp             CCCBCCCEEE---CSSBEEECCBCCCSSCSSCCEEEEEECCTTSCCCSSCCS----CEEECCCSSSCCCCCCBCCSTTCB
T ss_pred             CCCceEEEEE---cCCeEEEEECCCCcccccccccEEEEEEEcCCCCCccce----EEEEEeeccccceeEeeecCCCcc
Confidence            4787888765   5566999999994311 1112234554443322111000    011111122246777888899999


Q ss_pred             EEEEEEEecC--CCcCCCCccEEEE
Q psy6638         236 YAIVVRGYNS--VGKGPFSEPFIAR  258 (273)
Q Consensus       236 Y~~~v~a~n~--~g~~~~s~~~~~~  258 (273)
                      |.|+|+|...  ...|+||+++.+.
T Consensus        92 ytVrVRa~~~~~~~WS~WSqp~~ig  116 (120)
T 3cxe_C           92 HSVKIRAADVRILNWSSWSEAIEFG  116 (120)
T ss_dssp             CCCEEEEEESSSCCCBCCCCCCCBC
T ss_pred             EEEEEEeCCCCCCccCCCCCceEcc
Confidence            9999999853  3568888877664

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=97.24  E-value=0.006  Score=45.89  Aligned_cols=43  Identities=14%  Similarity=0.125  Sum_probs=29.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCc-eeEEEEEEecCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQETP   56 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~-~~~~~~~~~~~P   56 (273)
                      ++....|.|.++.++|.|.|.|.+.|..+.. .....+.+...|
T Consensus        78 ~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~  121 (276)
T 3auv_A           78 SGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGG  121 (276)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC----
T ss_pred             cCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCC
Confidence            4556789999999999999999999975542 223455555443

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=97.24  E-value=0.0011  Score=50.21  Aligned_cols=115  Identities=14%  Similarity=0.070  Sum_probs=67.4

Q ss_pred             EEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEecCCC-CCcceEEEE-----eeccEEEEEEeCCCCCCccceEEEEE
Q psy6638          20 LGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETPE-APKNIRITE-----ESSRSLQISWTAPYSGNTAITQYIIQ   92 (273)
Q Consensus        20 l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~~P~-~p~~~~~~~-----~~~~~~~l~W~~~~~~~~~~~~y~v~   92 (273)
                      |.|.++..+|.|.|+|.+.|..|.... .+.+.+...+. +|. +....     .....+.|.+.....   + ..+.+.
T Consensus       146 L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~-i~~~~~~~~~~~g~~v~l~C~~~~~---~-~~~~~~  220 (292)
T 4dkd_C          146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPA-LTLVPAELVRIRGEAAQIVCSASSV---D-VNFDVF  220 (292)
T ss_dssp             CEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCE-EEEESSCBCCCSSSCEEEEEEEEES---S-SCCEEE
T ss_pred             EEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCe-EEccCCceeEecCCCEEEEEEecCC---C-CceEEE
Confidence            999999999999999999998776644 67777765332 332 11111     134455555543210   1 122344


Q ss_pred             EEeCCCCCCCccceEEecC---CccEEEecCCCCCCeEEEEEEEeCCCCC
Q psy6638          93 YKSSEEMWPTQPLKIIVPG---SQTSATLQPLLPATQYQVRLLAENPLGM  139 (273)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~y~~~v~a~~~~g~  139 (273)
                      |...+..............   ....+.|.++.......|.|.|.|..|.
T Consensus       221 w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  270 (292)
T 4dkd_C          221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGK  270 (292)
T ss_dssp             CCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCE
T ss_pred             EeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCC
Confidence            4443322110111111111   1236788899999999999999998874

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=97.23  E-value=0.0048  Score=44.60  Aligned_cols=39  Identities=18%  Similarity=0.074  Sum_probs=29.2

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCC-----CceeEEEEEEec
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHG-----TAEMTIQLLVQE   54 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g-----~~~~~~~~~~~~   54 (273)
                      ....|.|.++.++|.|.|.|.+.+..|     .......+.+..
T Consensus        79 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  122 (222)
T 1q9r_B           79 SILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSA  122 (222)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECS
T ss_pred             CeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEecc
Confidence            466899999999999999999998764     122344555654

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=97.22  E-value=0.00098  Score=47.89  Aligned_cols=46  Identities=24%  Similarity=0.247  Sum_probs=33.8

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEecCCCCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETPEAP   59 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~~P~~p   59 (273)
                      .+....|.|.++..+|.|.|+|.+.|..|.... ...+.+...+.+|
T Consensus        67 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p  113 (213)
T 3d9a_L           67 SGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAP  113 (213)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCC
T ss_pred             CCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCc
Confidence            455678999999999999999999998775433 3456665544344

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=97.21  E-value=0.0019  Score=44.91  Aligned_cols=109  Identities=14%  Similarity=0.002  Sum_probs=64.7

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS   96 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~   96 (273)
                      ...|.|.++..+|.|.|+|.+.|..++..  +.+.+..++...............+.|.+....  +.+.  -.+.|...
T Consensus        50 ~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~--~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~p~--~~~~W~~~  123 (176)
T 1f2q_A           50 NSSLNIVNAKFEDSGEYKCQHQQVNESEP--VYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWR--NWDV--YKVIYYKD  123 (176)
T ss_dssp             SSEEEECSCCGGGCEEEEEECTTSSCCCC--EEEEEECSSEEEEESCSEEETTSCEEEEEEEGG--GCCE--EEEEEEET
T ss_pred             ceEEEEeccceecCEEEEEEcCCcccccc--EEEEEeCcceeecCCcceeeCCCCEEEEEEecC--CCCc--eEEEEEEC
Confidence            46899999999999999999998665443  444444222100000011224556777776421  1122  34555554


Q ss_pred             CCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          97 EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      +...       ........+.|.++.......|.+.|.|..+
T Consensus       124 g~~~-------~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  158 (176)
T 1f2q_A          124 GEAL-------KYWYENHNISITNATVEDSGTYYCTGKVWQL  158 (176)
T ss_dssp             TEEC-------CSCCCSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEE-------eeecCCCeEEECCCCcccCEEEEEEEEeCCc
Confidence            3211       1112346788888988888899999998643

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=97.21  E-value=0.0015  Score=46.79  Aligned_cols=46  Identities=20%  Similarity=0.143  Sum_probs=33.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEecCCCCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETPEAP   59 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~~P~~p   59 (273)
                      .+....|.|.++.++|.|.|+|.+.|..|.... ...+.+...+.+|
T Consensus        66 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P  112 (210)
T 1lk3_L           66 SGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAP  112 (210)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCC
T ss_pred             cCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCC
Confidence            445678999999999999999999998764332 3455565433333

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=97.20  E-value=0.00049  Score=49.65  Aligned_cols=42  Identities=31%  Similarity=0.398  Sum_probs=35.6

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      ..++|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|.
T Consensus       169 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  210 (213)
T 2x1w_L          169 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI  210 (213)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred             eeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence            466799999999999999999999999998888888877663

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.16  E-value=0.0084  Score=43.85  Aligned_cols=43  Identities=21%  Similarity=0.048  Sum_probs=32.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCC-ceeEEEEEEecCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGT-AEMTIQLLVQETP   56 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~-~~~~~~~~~~~~P   56 (273)
                      .+....|.|.++.++|.|.|+|.+.|..+. ......+.+...+
T Consensus        71 ~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~  114 (240)
T 1moe_A           71 SRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGG  114 (240)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCS
T ss_pred             cCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCC
Confidence            455678999999999999999999998664 2334566665543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=97.16  E-value=0.00078  Score=48.58  Aligned_cols=30  Identities=13%  Similarity=0.284  Sum_probs=25.7

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~   46 (273)
                      ..+|.|.++..+|.|.|+|.+.|..|....
T Consensus        82 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~  111 (225)
T 4fmk_A           82 DATLAFRGLRVEDEGNYTCEFATFPNGTRR  111 (225)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEE
T ss_pred             cEEEEEccCCHHHCcceEEEEEeCCCccee
Confidence            357999999999999999999998776554

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=97.15  E-value=0.00044  Score=42.77  Aligned_cols=34  Identities=21%  Similarity=0.441  Sum_probs=30.0

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .|.|.++..+|.|.|+|.|.|..|.....+.+.+
T Consensus        61 ~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEEESSCCGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEeccCCCcEEEEEEEEE
Confidence            7999999999999999999999998777666654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=97.14  E-value=0.00045  Score=50.27  Aligned_cols=44  Identities=32%  Similarity=0.471  Sum_probs=36.7

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcc
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN   61 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~   61 (273)
                      ..|.|.++...|.|.|+|.|.|..|.....+.+.+..+|.+|..
T Consensus       185 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~~  228 (231)
T 3ojm_B          185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR  228 (231)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-----
T ss_pred             cEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCcc
Confidence            46999999999999999999999999988999999999888764

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=97.14  E-value=0.0003  Score=46.13  Aligned_cols=36  Identities=22%  Similarity=0.389  Sum_probs=32.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ...|.|.+++.+|.|.|+|.+.|..|.....+.|.|
T Consensus        83 ~~sL~I~~v~~~D~G~Y~C~v~~~~g~~~~~v~LkV  118 (125)
T 4gos_A           83 NASLRLKNVQLTDAGTYKCYIITSKGKGNANLEYKT  118 (125)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEEECCCChHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence            357999999999999999999999988888887776

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=97.13  E-value=0.0005  Score=42.87  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=30.6

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ..|.|.++.++|.|.|+|.|.|..|.....+.+.+
T Consensus        65 ~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           65 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEEE
Confidence            37999999999999999999999998777766654

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=97.12  E-value=0.0028  Score=45.49  Aligned_cols=43  Identities=16%  Similarity=0.229  Sum_probs=33.9

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCC---ceeEEEEEEecCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGT---AEMTIQLLVQETP   56 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~---~~~~~~~~~~~~P   56 (273)
                      .+....|.|.++.++|.|.|+|.+.|..|.   ......+.+...|
T Consensus        66 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~  111 (213)
T 3mj8_L           66 SGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQP  111 (213)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSC
T ss_pred             cCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCC
Confidence            455678999999999999999999998872   3345667776554

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=97.12  E-value=0.0011  Score=42.21  Aligned_cols=52  Identities=19%  Similarity=0.319  Sum_probs=34.2

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCC-CC-ceeEEEEEEecCC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYH-GT-AEMTIQLLVQETP   56 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~-g~-~~~~~~~~~~~~P   56 (273)
                      +||.+...  .......|.|.+++++|.|.|.|.+.+.. |. ......+.+...|
T Consensus        55 ~R~~~~~~--~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~g~~~~~~~~v~v~V~p  108 (110)
T 2q87_A           55 GRVSIRDS--PANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP  108 (110)
T ss_dssp             TTEEEEEE--GGGTEEEEEESSCCGGGCEEEEEEEECTTSCCBCCCSEEEEEEEC-
T ss_pred             CCEEEEEc--CcCCEEEEEEccCCHHHCEEEEEEEecCccCccCCccEEEEEEEec
Confidence            45555422  23456789999999999999999999875 51 2234445554444

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=97.11  E-value=0.00043  Score=48.17  Aligned_cols=40  Identities=25%  Similarity=0.255  Sum_probs=33.4

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK   60 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~   60 (273)
                      .|.|.+++.+|.|.|+|.+.|..|  ...+.+.+..++..|.
T Consensus        61 sL~I~~v~~~DsG~Y~C~~~n~~~--~~~~~L~V~~~~~~p~  100 (171)
T 1ccz_A           61 SLTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVSKPM  100 (171)
T ss_dssp             CEEECSCCGGGCEEEEEECTTCCS--CEEEEEEEECCCCCCE
T ss_pred             eEEECCCChhhCceEEEEEeCCCC--cEEEEEEEECcCCCCE
Confidence            799999999999999999998877  5677777777665554

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.11  E-value=0.017  Score=42.97  Aligned_cols=115  Identities=15%  Similarity=0.103  Sum_probs=64.4

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCC----C-ceeEEEEEEecCCCCCcce---EEEEeeccEEEEEEeCCCCCCccc
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHG----T-AEMTIQLLVQETPEAPKNI---RITEESSRSLQISWTAPYSGNTAI   86 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g----~-~~~~~~~~~~~~P~~p~~~---~~~~~~~~~~~l~W~~~~~~~~~~   86 (273)
                      .....|.|.++.++|.|.|+|.+.+..+    + ....+.+.+...+..|.-.   .........++|.+.....   + 
T Consensus        59 ~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~---~-  134 (257)
T 1b6u_A           59 VSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSS---Y-  134 (257)
T ss_dssp             CEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSC---C-
T ss_pred             CceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCC---C-
Confidence            3456899999999999999999986432    1 2335667776654333210   0011245678888886421   2 


Q ss_pred             eEEEEEEEeCCCCCCCccc-eEEec-CCccEEEecCCCCCCeEEEEEEEeCCC
Q psy6638          87 TQYIIQYKSSEEMWPTQPL-KIIVP-GSQTSATLQPLLPATQYQVRLLAENPL  137 (273)
Q Consensus        87 ~~y~v~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~~~y~~~v~a~~~~  137 (273)
                      ..  +.|...+........ ..... .....+.|.++.  ....|+|.|.+..
T Consensus       135 ~~--~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~  183 (257)
T 1b6u_A          135 DM--YHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRD  183 (257)
T ss_dssp             SE--EEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSS
T ss_pred             cE--EEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCC
Confidence            23  344444332110000 00000 124567777777  6678888888653

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=97.11  E-value=0.0091  Score=43.94  Aligned_cols=42  Identities=19%  Similarity=0.207  Sum_probs=30.1

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCc-eeEEEEEEecC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTA-EMTIQLLVQET   55 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~-~~~~~~~~~~~   55 (273)
                      .+....|.|.++.++|.|.|.|.+.|..+.. .....+.+..+
T Consensus        72 ~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  114 (247)
T 1svz_A           72 SGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGG  114 (247)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             CCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECC
Confidence            4556789999999999999999999875532 12345566544

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.11  E-value=0.00099  Score=42.07  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=26.0

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      .++....|.|.++..+|.|.|+|.|.|..+
T Consensus        58 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   87 (106)
T 2dlt_A           58 HVGRFHKLVIDDVRPEDEGDYTFVPDGYAL   87 (106)
T ss_dssp             EETTEEEEEESSCCTTTCSCEEEEEETSCC
T ss_pred             EeCCEEEEEECCCCcCCCEEEEEEEccCCc
Confidence            356677899999999999999999999833

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=97.10  E-value=0.011  Score=42.67  Aligned_cols=41  Identities=17%  Similarity=0.156  Sum_probs=30.1

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCC---ceeEEEEEEecC
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGT---AEMTIQLLVQET   55 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~---~~~~~~~~~~~~   55 (273)
                      +....|.|.+++++|.|.|.|.+.+..+.   ......+.+...
T Consensus        76 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~  119 (220)
T 2fbj_H           76 KNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAE  119 (220)
T ss_dssp             SCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSS
T ss_pred             CCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCC
Confidence            34678999999999999999999987542   112345666543

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=97.10  E-value=0.0026  Score=45.96  Aligned_cols=45  Identities=22%  Similarity=0.308  Sum_probs=36.8

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      .++..+.|.|.++..+|.|.|+|.|.|..|.....+.+.+..+|-
T Consensus       165 ~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  209 (222)
T 4i0k_A          165 ERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPL  209 (222)
T ss_dssp             TTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC---
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCcc
Confidence            445556689999999999999999999999999999888877764

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.09  E-value=0.0011  Score=42.38  Aligned_cols=40  Identities=23%  Similarity=0.393  Sum_probs=32.6

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      ++....|.|.++..+|.|.|+|.|.|    ....+.+.+..+|.
T Consensus        64 ~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~~~p~  103 (113)
T 2cpc_A           64 EDTVRRLVLPAVQLEDSGEYLCEIDD----ESASFTVTVTEPPV  103 (113)
T ss_dssp             CSSEEEEEESSCCTTTCEEEEEESSS----CEEEEEEEEECCCC
T ss_pred             CCCEEEEEECCCCcccCEEEEEEEec----CcEEEEEEEecCCc
Confidence            45567899999999999999999988    44567777777664

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=97.06  E-value=0.003  Score=47.68  Aligned_cols=121  Identities=9%  Similarity=0.055  Sum_probs=65.2

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCC-------CC--ceeEEEEEEec---------------CCCCCcceEEEEeec
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYH-------GT--AEMTIQLLVQE---------------TPEAPKNIRITEESS   69 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~-------g~--~~~~~~~~~~~---------------~P~~p~~~~~~~~~~   69 (273)
                      .+..+.|.|.++.++|.|.|.|.+.+..       +.  ......+.+..               +|.......+.....
T Consensus        75 ~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G  154 (280)
T 3fku_X           75 STRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLR  154 (280)
T ss_dssp             TTTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTT
T ss_pred             CCCEEEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecC
Confidence            4566799999999999999999999861       11  11233445544               222111122333456


Q ss_pred             cEEEEEEeCCC-CC-CccceEEEEEEEeCCCCCC-------------CccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          70 RSLQISWTAPY-SG-NTAITQYIIQYKSSEEMWP-------------TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        70 ~~~~l~W~~~~-~~-~~~~~~y~v~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      ..++|.+.... .. ...+..|+   ...+....             ..............+.|.++.+.....|.|.+.
T Consensus       155 ~~v~L~C~~~~~~~~~~~v~W~r---~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  231 (280)
T 3fku_X          155 QTATLTCTGNSNNVGNQGAAWLQ---QHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTW  231 (280)
T ss_dssp             CCEEEEEECCCCCCCTTCCEEEE---ECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCEEEEEEecCCCCCCceEEEEE---ECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEe
Confidence            67888887543 11 11222221   11111000             000111122233458889999888888888887


Q ss_pred             CCC
Q psy6638         135 NPL  137 (273)
Q Consensus       135 ~~~  137 (273)
                      +..
T Consensus       232 ~~~  234 (280)
T 3fku_X          232 DSS  234 (280)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            754

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=97.05  E-value=0.0014  Score=41.44  Aligned_cols=39  Identities=31%  Similarity=0.524  Sum_probs=31.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      ++..+.|.|.++..+|.|.|+|.|.|    ....+.+.+..+|
T Consensus        58 ~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~~~p   96 (108)
T 2dm7_A           58 DGTRCELQIHDLSVADAGEYSCMCGQ----ERTSATLTVRALP   96 (108)
T ss_dssp             ETTEEEEEESSCCTTTCSEEEEEETT----EEEEEECEEECCC
T ss_pred             cCCEEEEEECCCCcccCEEEEEEEcC----CEEEEEEEEecCC
Confidence            56677899999999999999999943    4556677776654

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=97.04  E-value=0.0014  Score=52.84  Aligned_cols=37  Identities=16%  Similarity=0.202  Sum_probs=30.8

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      ..|.|.++.++|.|.|+|.|.|.   ....+.+.+..+|.
T Consensus       290 ~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~  326 (423)
T 3qs7_E          290 LFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGF  326 (423)
T ss_dssp             EEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCE
T ss_pred             EEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCc
Confidence            47999999999999999999998   55577777776653

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=97.04  E-value=0.0011  Score=44.15  Aligned_cols=40  Identities=25%  Similarity=0.324  Sum_probs=34.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      ...|.|.+++.+|.|.|+|.+.+..|.....+.|.+..++
T Consensus        84 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~P~  123 (139)
T 1pko_A           84 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  123 (139)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             eEEEEEccCCHHHCEEEEEEEEcCCCceEEEEEEEEecCc
Confidence            5689999999999999999999988776667788887444

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.04  E-value=0.00087  Score=41.12  Aligned_cols=28  Identities=21%  Similarity=0.417  Sum_probs=24.4

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .+|...+|.|.++.++|.|.|+|.|.|.
T Consensus        56 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           56 NEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             EETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             ecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            4677789999999999999999998654

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.03  E-value=0.0017  Score=47.34  Aligned_cols=29  Identities=17%  Similarity=0.264  Sum_probs=25.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      .+....|.|.+++.+|.|.|+|.+.|..+
T Consensus        87 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  115 (234)
T 2j6e_L           87 SGTSASLAISGLRSEDEADYYCATWDDSL  115 (234)
T ss_dssp             ETTEEEEEEESCCSTTCSEEEEEEEETTT
T ss_pred             cCCeEEEEECCCCHHHCEEEEEEEEcCCc
Confidence            34566899999999999999999999877

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=97.01  E-value=0.00055  Score=44.04  Aligned_cols=40  Identities=25%  Similarity=0.406  Sum_probs=32.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEc-CCCCceeEEEEEEecCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATN-YHGTAEMTIQLLVQETP   56 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n-~~g~~~~~~~~~~~~~P   56 (273)
                      ...|.|.+++.+|.|.|.|.+.+ ..|.....+.+.+..+|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~~P  118 (118)
T 3udw_C           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP  118 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             CcEEEEeecChHHCeEEEEEEEECCCCCccceEEEEEEeCC
Confidence            45899999999999999999998 66666667777777655

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=96.99  E-value=0.0021  Score=39.59  Aligned_cols=35  Identities=26%  Similarity=0.466  Sum_probs=28.1

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ++....|.|.++..+|.|.|+|.|    |.....+.+.+
T Consensus        59 ~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~l~V   93 (95)
T 2k1m_A           59 EGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV   93 (95)
T ss_dssp             ETTEEEEEESSCCTTCCSEEEEEE----TTEEEEEEEEE
T ss_pred             cCCEEEEEEcCCCcccCEEEEEEE----CCceEEEEEEE
Confidence            566778999999999999999999    55555565554

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=96.99  E-value=0.00079  Score=41.16  Aligned_cols=42  Identities=14%  Similarity=0.207  Sum_probs=32.1

Q ss_pred             EecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEE
Q psy6638          11 VLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLV   52 (273)
Q Consensus        11 ~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~   52 (273)
                      .+.......|.|.++..+|.|.|+|.|.|..|.... .+.+.+
T Consensus        43 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V   85 (91)
T 3bfo_A           43 PLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII   85 (91)
T ss_dssp             ECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEE
T ss_pred             eCCcCCCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEEE
Confidence            333444568999999999999999999999986543 455554

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=96.99  E-value=0.048  Score=38.42  Aligned_cols=162  Identities=14%  Similarity=0.072  Sum_probs=89.1

Q ss_pred             ccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEE
Q psy6638          69 SRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQA  148 (273)
Q Consensus        69 ~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~  148 (273)
                      ...+.|.|... + ++.+..++++.  .+..      ..........+....+. ...|.++++|....|....+..+.+
T Consensus        16 g~~vtv~~~As-~-d~~V~~Ve~~~--dg~~------v~~~t~~~ys~~~~~~~-~G~htlta~A~D~aGn~s~s~~v~v   84 (190)
T 3pdd_A           16 GKDINISATVK-S-KTPVSKVEFYN--GDTL------ISSDTTAPYTAKITGAA-VGAYNLKAVAVLSDGRRIESPVTPV   84 (190)
T ss_dssp             TSCEEEEEEEC-C-SSCEEEEEEEE--TTEE------EEEECSSSEEEEECSCC-SEEEEEEEEEEETTSCEEECCCEEE
T ss_pred             CCeEEEEEEEe-C-CCCEEEEEEEE--CCEE------EccccCCceEEEeccCC-CccEEEEEEEEECCCCEeeecceeE
Confidence            34789999886 3 33566555543  2211      00111122345555543 4479999999988885544444555


Q ss_pred             EecCCCCCCCCeeEEecC-Ccc--CCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEE
Q psy6638         149 STLEEAPNGAPREVTSDP-GVV--DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGEL  225 (273)
Q Consensus       149 ~~~~~~p~~~p~~~~~~~-~~~--~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (273)
                      ......||  -..+.... +..  ....+.|.|.....   .|.+.+++++.  .+.        .+.. .  ......+
T Consensus        85 tV~~~~~P--tv~itsP~~g~~~~~~~~vtl~~~AsD~---~g~V~~Ve~~~--dg~--------~v~t-~--t~~~y~~  146 (190)
T 3pdd_A           85 LVKVIVKP--TVKLTAPKSNVVAYGNEFLKITATASDS---DGKISRVDFLV--DGE--------VIGS-D--REAPYEY  146 (190)
T ss_dssp             EEECCCCC--EEEEEECCTTCCCBTTSEEEEEEEEECS---SSCEEEEEEEE--TTE--------EEEE-E--CSSSEEE
T ss_pred             EeccCCCC--ceeecCCCCCcEEecCCeEEEEEEEECC---CCcEEEEEEEE--CCE--------EEec-c--cCCCEEE
Confidence            55432222  11222211 001  24578999988643   34566776654  221        0111 1  1111233


Q ss_pred             EcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         226 RIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       226 ~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      ....  +...|.|+++|.+..|....|..+.+.+.+
T Consensus       147 ~~~~--~~G~~tl~a~A~D~aGn~s~s~~vtvtv~~  180 (190)
T 3pdd_A          147 EWKA--VEGNHEISVIAYDDDDAASTPDSVKIFVKQ  180 (190)
T ss_dssp             EEEC--CSEEEEEEEEEEETTCCBCCCEEEEEEEBC
T ss_pred             EEec--CCeeEEEEEEEEECCCCEEecceEEEEECC
Confidence            3333  566999999999999987678788887654

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=96.99  E-value=0.019  Score=42.09  Aligned_cols=43  Identities=21%  Similarity=0.146  Sum_probs=30.1

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCce-eEEEEEEecCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP   56 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~-~~~~~~~~~~P   56 (273)
                      .+....|.|.++.++|.|.|.|.+.|..+... ....+.+..+|
T Consensus        67 ~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~  110 (242)
T 2znx_A           67 SGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGG  110 (242)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             CCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCC
Confidence            44567899999999999999999998754321 23456665544

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.98  E-value=0.00024  Score=44.56  Aligned_cols=40  Identities=23%  Similarity=0.425  Sum_probs=30.5

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      .++....|.|.++..+|.|.|+|.|.|    ....+.+.+..+|
T Consensus        62 ~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~~l~V~~~P  101 (101)
T 2edk_A           62 KDGKRHILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ  101 (101)
T ss_dssp             ECSSEEEEECSSCCGGGCSBEEEECSS----CEECCBEEEECCC
T ss_pred             ECCCEEEEEECCCChhhCEEEEEEEcC----CcEEEEEEEeCCC
Confidence            466778999999999999999999987    2334455555544

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=96.96  E-value=0.0045  Score=42.54  Aligned_cols=105  Identities=6%  Similarity=-0.034  Sum_probs=62.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC--CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE--APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS   96 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~--~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~   96 (273)
                      .+.|.++..+|.|.|+|.+.|..++.  .+.+.+..+|.  .+...  .......+.|.+.....  .+  ...+.|...
T Consensus        52 ~~~~~~~~~~d~G~Y~C~~~~~~~s~--~~~l~v~~~~~~~~~~~~--~~~~g~~~~l~C~~~~~--~p--~~~~~W~~~  123 (170)
T 3ry4_A           52 PSYRFKANNNDSGEYTCQTGQTSLSD--PVHLTVLFEWLVLQTPHL--EFQEGETIMLRCHSWKD--KP--LVKVTFFQN  123 (170)
T ss_dssp             SEEEEECCGGGCEEEEEEETTSBCCC--CEEEEEECCSEEEECSCS--EECTTCCEEEEEEEGGG--CC--EEEEEEEET
T ss_pred             ceEEEecccccCeEEEEEEeCCCceE--eEEEEEECCceEecCCCc--eeecCCeEEEEEECCCC--CC--CceEEEEEC
Confidence            46788999999999999999755443  44555544331  11111  11234456666654211  11  134555543


Q ss_pred             CCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          97 EEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      +..       .........+.|.++.......|++.|.|..|
T Consensus       124 g~~-------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  158 (170)
T 3ry4_A          124 GKS-------QKFSHLDPTFSIPQANHSHSGDYHCTGNIGYT  158 (170)
T ss_dssp             TEE-------EEEESSCCEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CeE-------ccccCCCCeEEEEeccccCCEEEEEEEEeCcC
Confidence            321       12223455788888888888899999998776

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=96.95  E-value=0.0018  Score=45.42  Aligned_cols=55  Identities=18%  Similarity=0.170  Sum_probs=39.9

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCcceEEEEeeccEEEEEEeC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTA   78 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~~~~~~~~~~~~~~l~W~~   78 (273)
                      .|.|.+++.+|.|.|+|.+.+.. .....+.+.+..++..|... +   ....+.|.+..
T Consensus        70 sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~~L~V~~~~~~P~i~-~---~~~~v~L~C~~  124 (180)
T 2dru_A           70 ALRIYNVSKEDRGDYYMRMLHET-EDQWKITMEVYEMVSKPMIY-W---ECSNATLTCEV  124 (180)
T ss_dssp             CEEECSCCGGGCEEEEEEEESSS-EEEEEEEEEEECCCCCCEEE-E---EGGGTEEEEEC
T ss_pred             cEEEcCCCHHHCeEEEEEEEcCC-eEEEEEEEEEECCCCCCEEE-e---cCCCEEEEEEe
Confidence            69999999999999999998765 44456777777766555421 2   23447777776

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=96.92  E-value=0.0046  Score=47.33  Aligned_cols=117  Identities=17%  Similarity=0.214  Sum_probs=64.4

Q ss_pred             EEEEeeeeeCCCEEEEEEEE-cCCCCcee---EEEEEEecC--CCCCcce-----EEEEeeccEEEEEEeCCCCCCccce
Q psy6638          19 ELGIANVLRQDSGTLSCLAT-NYHGTAEM---TIQLLVQET--PEAPKNI-----RITEESSRSLQISWTAPYSGNTAIT   87 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~-n~~g~~~~---~~~~~~~~~--P~~p~~~-----~~~~~~~~~~~l~W~~~~~~~~~~~   87 (273)
                      .|.|.++..+|.|.|+|.|. |..|....   .+.+.+...  +.+|.-.     .+.......+.|.+.....+   ..
T Consensus       163 ~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P---~p  239 (315)
T 1itb_B          163 RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL---SD  239 (315)
T ss_dssp             EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECT---TS
T ss_pred             eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCC---CC
Confidence            79999999999999999999 78887633   333333311  2222211     12222345566665532111   11


Q ss_pred             EEEEEEEeCCCCCCCcc-----ceEEecC--------CccEEEecCCCCCC-eEEEEEEEeCCCCCC
Q psy6638          88 QYIIQYKSSEEMWPTQP-----LKIIVPG--------SQTSATLQPLLPAT-QYQVRLLAENPLGMS  140 (273)
Q Consensus        88 ~y~v~~~~~~~~~~~~~-----~~~~~~~--------~~~~~~~~~l~~~~-~y~~~v~a~~~~g~~  140 (273)
                        .+.|...+.......     .......        ....+.|.++.... ...|.+.|.|..|..
T Consensus       240 --~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~  304 (315)
T 1itb_B          240 --IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID  304 (315)
T ss_dssp             --EEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCE
T ss_pred             --eeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCce
Confidence              244544432111000     0011100        12368888888877 788899999998844

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=96.92  E-value=0.0072  Score=43.12  Aligned_cols=118  Identities=15%  Similarity=0.124  Sum_probs=59.8

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEE-EEEEecCCCCCcc--eEEEEeeccEEEEEEeCCCCCCccceEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTI-QLLVQETPEAPKN--IRITEESSRSLQISWTAPYSGNTAITQYIIQY   93 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~-~~~~~~~P~~p~~--~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~   93 (273)
                      ..+|.|.++..+|.|.|.|.+.+..+...... .+.+..++.....  ..........+.+.+.....+  +.   .+.|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p--~p---~i~W  152 (218)
T 4frw_A           78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSP--AP---SVTW  152 (218)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBS--CC---EEEE
T ss_pred             eEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCc--Cc---eEEE
Confidence            34699999999999999999998766554433 3333333221111  001111233344444321100  11   2444


Q ss_pred             EeCCCCCCCccceEEecC---CccEEEecCCCCCCeEEEEEEEeCCCCCC
Q psy6638          94 KSSEEMWPTQPLKIIVPG---SQTSATLQPLLPATQYQVRLLAENPLGMS  140 (273)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~y~~~v~a~~~~g~~  140 (273)
                      ...+.... .........   ....+.|..+.......|+|.|.|..|..
T Consensus       153 ~~~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~  201 (218)
T 4frw_A          153 DTEVKGTT-SSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQ  201 (218)
T ss_dssp             EESSCCEE-EEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSS
T ss_pred             EECCcccc-cCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCe
Confidence            44332110 000011111   12346777777777778899999987743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	273
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	3e-18
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	3e-06
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	4e-17
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	7e-17
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	1e-13
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	9e-17
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	2e-14
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	4e-16
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	4e-12
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	6e-16
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	2e-11
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	1e-15
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	1e-09
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	3e-15
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	9e-06
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	2e-14
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	2e-14
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	1e-08
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	2e-14
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	9e-11
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	1e-13
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	3e-12
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	1e-13
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	3e-05
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	3e-13
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	4e-13
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	3e-04
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	6e-13
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	1e-06
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	1e-12
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	8e-08
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	1e-12
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	7e-11
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	1e-12
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-12
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	0.001
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	4e-12
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	4e-12
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	7e-12
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	2e-05
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	1e-11
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	2e-04
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-11
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	6e-04
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	3e-11
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	4e-11
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	4e-11
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	5e-04
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	4e-11
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	5e-11
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	2e-06
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	5e-11
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	6e-11
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	1e-10
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	8e-08
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	2e-10
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	2e-10
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	3e-10
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	3e-10
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	1e-07
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	4e-10
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	7e-06
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	5e-10
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	5e-10
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	6e-10
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	5e-06
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	7e-10
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	6e-05
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	9e-10
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	9e-10
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	1e-09
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	1e-09
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	0.001
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	1e-09
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	1e-04
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-09
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	4e-07
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	2e-09
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	4e-08
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	3e-09
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	3e-09
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	4e-09
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	6e-09
d2cspa1	117	b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho	8e-09
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	9e-09
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	1e-04
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	2e-08
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	2e-08
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	1e-04
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	6e-08
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	0.002
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	8e-08
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	0.001
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-07
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	1e-07
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	4e-04
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-07
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	2e-07
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	0.001
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	2e-07
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	5e-07
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	7e-07
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	7e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-06
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	1e-06
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	1e-06
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	2e-06
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-06
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	2e-06
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	0.004
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-06
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	2e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	3e-06
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	8e-06
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	8e-06
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	1e-05
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	2e-05
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	0.004
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	2e-05
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-05
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	5e-05
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	6e-05
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	6e-05
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	6e-05
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	7e-05
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-04
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	5e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	6e-04
d1erna2	105	b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor	6e-04
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	6e-04
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	8e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	9e-04
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	9e-04
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	0.001
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	0.001
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	0.001
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.004

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (186), Expect = 3e-18
 Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 47  TIQLLVQETPEAPKN--IRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQP 104
           +  L V++ P AP++    ++    R++ ++WT P+ GN+ + +YI++   +   W    
Sbjct: 2   SAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLL 61

Query: 105 LKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
               V    TS T++ L+PA  YQ RL A N +G  +   + +  +L E
Sbjct: 62  --ASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 108

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 13/116 (11%)

Query: 144 AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGS 203
           A L+   L  AP   P    S    V+   + + W  P     N  L+ Y +    ++  
Sbjct: 3   AHLRVRQLPHAP-EHPVATLST---VERRAINLTWTKP--FDGNSPLIRYILEMSENNAP 56

Query: 204 SLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
              L +               + + GL P   Y   +   N VGKG FS+     +
Sbjct: 57  WTVLLASVDPK-------ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS 105

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 4e-17
 Identities = 32/208 (15%), Positives = 59/208 (28%), Gaps = 18/208 (8%)

Query: 55  TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
            P  P +      SS  + + W  P   N  IT Y++ ++   E                
Sbjct: 2   NPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELF--------ELD 53

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTEL 174
                  LP+  +     +E+    +++  E  A      P       T    + +  E 
Sbjct: 54  YCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCP------KTDSQILKELEES 107

Query: 175 LIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT 234
             +            +       +       A ++   +  E     +  L I GL  +T
Sbjct: 108 SFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFE-KVVNKESLVISGLRHFT 166

Query: 235 KYAIVVRGYNSVGKGPF---SEPFIART 259
            Y I ++  N          +    ART
Sbjct: 167 GYRIELQACNQDTPEERCSVAAYVSART 194

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 7e-17
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS 209
           + E+ P  AP  V  +   V+ T   + W   P +S  G L GY + Y  +  SS     
Sbjct: 9   SGEDLPMVAPGNVRVNV--VNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRR 66

Query: 210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
           +  K +      +    +PGL P++ Y + VR  N  G+GP S   +  T EG
Sbjct: 67  HIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEG 119

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 1e-13
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 56  PEAPKNIRITEESSRSLQISWT--APYSGNTAITQYIIQYK-----SSEEMWPTQPLKII 108
             AP N+R+   +S   ++ W      S    +  Y I Y      S       +   + 
Sbjct: 15  MVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILT 74

Query: 109 VPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             GS+T   L  L P + Y + +   N  G      +   +T E + 
Sbjct: 75  FQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 9e-17
 Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 149 STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS 208
           ST E AP+G P +VT  P  V    + + WKAP +E  NGV+ GY +GY+ +S  S    
Sbjct: 2   STEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQY 59

Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
           S        D++      +  L  + +Y +VV+ +N  G GP S    A T E
Sbjct: 60  SIVEMKATGDSE---VYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLE 109

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 2e-14
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPY--SGNTAITQYIIQYKSS--EEMWPTQPLKIIVPG 111
              P ++ +   +S+S+Q++W AP     N  I  Y I Y+ +          +++   G
Sbjct: 9   DGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATG 68

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE 152
                TL  L    QY V + A N  G   + +E+ A+TLE
Sbjct: 69  DSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLE 109

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 4e-16
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 9/119 (7%)

Query: 145 ELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSS 204
           ++   TL + P+ AP+ ++ +    +   ++I W+ P   + NG + GY + Y+ +S  S
Sbjct: 1   DVAVRTLSDVPSAAPQNLSLEV--RNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKS 58

Query: 205 LALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGD 263
               +         +  +    I GL   T+Y   V      G GP ++   A T E D
Sbjct: 59  DVTETL-------VSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESD 110

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 4e-12
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 4/114 (3%)

Query: 45  EMTIQLLVQETPEAPKNIRITEESSRSLQISWT--APYSGNTAITQYIIQYKSSEEMWPT 102
           ++ ++ L      AP+N+ +   +S+S+ I W   AP + N  IT Y I+Y+ +      
Sbjct: 1   DVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDV 60

Query: 103 QPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAPN 156
                +V G+Q S  ++ L   T+Y  R+ A    G       L A T E   +
Sbjct: 61  TE--TLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLD 112

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 6e-16
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
           Q  P     IR       S+ + W  P   N  I +Y I+Y   ++   +      +   
Sbjct: 1   QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYS---TLKAV 57

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE 152
            T AT+  L P T+Y  ++ A    G       ++  T +
Sbjct: 58  TTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 97

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 2e-11
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 12/109 (11%)

Query: 153 EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTL 212
           +A       +  +      T + + W+ P  E  NG++L Y++ Y        + S+   
Sbjct: 1   QAAPSQVVVIRQER--AGQTSVSLLWQEP--EQPNGIILEYEIKYYEKDKEMQSYSTLKA 56

Query: 213 KSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
                         + GL P T+Y   VR   S G G FS+     T +
Sbjct: 57  V--------TTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 97

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 1e-15
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 54  ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
           + P    N+R    S  S+ ++W  P SGN  I  Y + Y               V  S 
Sbjct: 9   QLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQD-----VDVSS 63

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
            S T+  L   T+Y  R++A N  G   +  ++   TL +
Sbjct: 64  HSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD 103

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 1e-09
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 14/105 (13%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
           G    + +      PT + + W+ P   S NG +  Y + Y                  +
Sbjct: 12  GPAPNLRAYA--ASPTSITVTWETP--VSGNGEIQNYKLYYMEKGT----------DKEQ 57

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
             +       I GL  YT+Y+  V  YN  G G  +     RT  
Sbjct: 58  DVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLS 102

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.9 bits (165), Expect = 3e-15
 Identities = 24/86 (27%), Positives = 40/86 (46%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           PEAP    I+  S  S+ ++W    +G   I  + ++YK  +++         +P S+ S
Sbjct: 11  PEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLS 70

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
             +  L     Y+ R+ A N LG SE
Sbjct: 71  VEITGLEKGISYKFRVRALNMLGESE 96

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (97), Expect = 9e-06
 Identities = 19/108 (17%), Positives = 29/108 (26%), Gaps = 9/108 (8%)

Query: 147 QASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLA 206
           Q      +P  AP   T        T + + W             G+ +         L 
Sbjct: 2   QPDHGRLSPPEAPDRPTIST--ASETSVYVTWIPRGNG-------GFPIQSFRVEYKKLK 52

Query: 207 LSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
                + +          + I GL     Y   VR  N +G+   S P
Sbjct: 53  KVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAP 100

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.7 bits (159), Expect = 2e-14
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           +APKN+R+   ++ SL + W           +Y + Y +       + L     G  T  
Sbjct: 2   DAPKNLRVGSRTATSLDLEWDNS---EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKT 58

Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
           TL  L+P T+Y V + A      S   A + A T
Sbjct: 59  TLTDLVPGTEYGVGISAVMNSKQSIP-ATMNART 91

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 2e-14
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
           ++ P    ++  +E    SL++SW  P   N  +T Y I ++              +P  
Sbjct: 8   EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRV--THYLPNV 65

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE 152
                +  L   T Y + + A    G  +  A   +S + 
Sbjct: 66  TLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVP 105

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 1e-08
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS 209
           T E+ P G    ++     +  T L + W+ P     NG+L GY + ++  + +      
Sbjct: 6   THEDVP-GPVGHLSFSE--ILDTSLKVSWQEP--GEKNGILTGYRISWEEYNRT------ 54

Query: 210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
              +          E R+ GLT  T Y I V    S G+G  S   I+  
Sbjct: 55  -NTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSG 103

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (158), Expect = 2e-14
 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 48  IQLLVQET-PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLK 106
           IQ++ Q   P  P N +   ES  S+ +SWT P S    I  Y + YK  E     +   
Sbjct: 2   IQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSDT--IANYELVYKDGEHGEEQR--- 56

Query: 107 IIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE 152
            I     TS  LQ L P + Y  RL A +P G+  + AE+ A T++
Sbjct: 57  -ITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 101

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 9e-11
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 16/117 (13%)

Query: 145 ELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSS 204
           ++Q  T    P G P    ++P     T +L+ W  P     +  +  Y++ Y+      
Sbjct: 1   DIQVITQTGVP-GQPLNFKAEP--ESETSILLSWTPPR----SDTIANYELVYKDGEHGE 53

Query: 205 LALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
                    ++E    Y    R+ GL P + Y   +   +  G G  +    ART +
Sbjct: 54  -----EQRITIEPGTSY----RLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 101

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 1e-13
 Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 147 QASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLA 206
             +T E  P   P++VT       P  +++ W+  P    NG + GY + Y     +   
Sbjct: 3   HGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQ--PPSEANGKITGYIIYYSTDVNAE-- 58

Query: 207 LSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
                   +E         +I  LT  T Y   ++  NS G GP SE    RT +
Sbjct: 59  ---IHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK 110

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 3e-12
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 56  PEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
              PK++ +   E   +++ ++W  P   N  IT YII Y +         +   V G++
Sbjct: 12  TSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNR 71

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE 152
            +  +Q L   T Y  ++ A N  GM      +Q  T +
Sbjct: 72  LTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK 110

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 1e-13
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P+ P   RI   +  SL + W AP    + I  +++++   +             GSQ  
Sbjct: 11  PDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFC---QCYMGSQKQ 67

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
             +  L PA   + RL A N  G S    E+   T
Sbjct: 68  FKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYT 102

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 13/111 (11%)

Query: 149 STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS 208
           +TL   P   P              L ++WKAP        +  + + +    G+     
Sbjct: 5   TTLSCEP-DIPNPPRIAN--RTKNSLTLQWKAPSD--NGSKIQNFVLEWDEGKGNGEFCQ 59

Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
            Y     +         +I  L+P       +   N  G   FSE  +  T
Sbjct: 60  CYMGSQKQF--------KITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYT 102

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.8 bits (149), Expect = 3e-13
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           + PK++ +++ +  +L + W  P +      +Y + Y S           + +P   TS 
Sbjct: 1   DNPKDLEVSDPTETTLSLRWRRPVA---KFDRYRLTYVSPSGKKNE----MEIPVDSTSF 53

Query: 117 TLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
            L+ L   T+Y + L+AE     S+    ++ ST+
Sbjct: 54  ILRGLDAGTEYTISLVAEKGRHKSKP-TTIKGSTV 87

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 4e-13
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           ++P  I  ++ ++ S  + W AP      IT Y I++         +     VP S+ S 
Sbjct: 2   DSPTGIDFSDITANSFTVHWIAP---RATITGYRIRHHPEHFSGRPRE--DRVPHSRNSI 56

Query: 117 TLQPLLPATQYQVRLLAENPLGMSE 141
           TL  L P T+Y V ++A N    S 
Sbjct: 57  TLTNLTPGTEYVVSIVALNGREESP 81

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 3e-04
 Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 14/93 (15%)

Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
           +P  +      +      + W A         + GY + +     S         +   +
Sbjct: 3   SPTGIDFSD--ITANSFTVHWIA-----PRATITGYRIRHHPEHFS------GRPREDRV 49

Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
            +     + +  LTP T+Y + +   N   + P
Sbjct: 50  PHS-RNSITLTNLTPGTEYVVSIVALNGREESP 81

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 6e-13
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P  P  + I+  +  +  + W  P      +  Y +QY         +P  I        
Sbjct: 1   PGRPTMM-ISTTAMNTALLQWHPPKELPGELLGYRLQYC---RADEARPNTIDFGKDDQH 56

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
            T+  L   T Y  RL A+N  G+ E   E +  T E+
Sbjct: 57  FTVTGLHKGTTYIFRLAAKNRAGLGEE-FEKEIRTPED 93

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 13/103 (12%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
           G P  + S          L++W  P  +   G LLGY + Y  +  +      +      
Sbjct: 2   GRPTMMIST---TAMNTALLQWHPP--KELPGELLGYRLQYCRADEARPNTIDFGKDDQH 56

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
                     + GL   T Y   +   N  G G   E  I   
Sbjct: 57  F--------TVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTP 91

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 1e-12
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 55  TPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
            P AP+++  +  S+R ++++W  P    +     Y + Y                   +
Sbjct: 10  LPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVE--NTSHPGE 67

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
              T+Q L+PAT Y  R++A+N  G  E+ A L+  T  E
Sbjct: 68  MQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPE 107

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 8e-08
 Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 152 EEAPN------GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSL 205
           E AP        APR+V +    V    + + W+ P  +  +G  L Y V Y     +  
Sbjct: 1   EHAPATTGPLPSAPRDVVASL--VSTRFIKLTWRTPASDP-HGDNLTYSVFYTKEGIA-- 55

Query: 206 ALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
                  +     +  E ++ I  L P T Y   V   N  G G  S P    T  
Sbjct: 56  -----RERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQP 106

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 1e-12
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 53  QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGS 112
            + P  P  I   E  + S+++ W  P + N  I  Y I ++ +     T  ++ ++  S
Sbjct: 18  DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVE-VLAPS 76

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
               T   L P + Y  R+ A+   G  E    L  +T
Sbjct: 77  ARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 114

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 7e-11
 Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 11/116 (9%)

Query: 146 LQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSL 205
           +   TL++ P G P  +      V  T + + W+ P   + NG++L Y + +++++ ++ 
Sbjct: 12  ILERTLDDVP-GPPMGILFPE--VRTTSVRLIWQPP--AAPNGIILAYQITHRLNTTTA- 65

Query: 206 ALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
                   +VE+      +    GL P + Y   +      G G  +E  +  T +
Sbjct: 66  -----NTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEK 116

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 1e-12
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           +AP N+R    +  SL +SW  P      IT YII+Y+  +   P + +        T A
Sbjct: 2   DAPSNLRFLATTPNSLLVSWQPPR---ARITGYIIKYE--KPGSPPREVVPRPRPGVTEA 56

Query: 117 TLQPLLPATQYQVRLLAENPLGMSE 141
           T+  L P T+Y + ++A      SE
Sbjct: 57  TITGLEPGTEYTIYVIALKNNQKSE 81

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 2e-12
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 52  VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
           + + P  P   ++T+ +  S+ +SW     G    + YII+  S       Q +      
Sbjct: 12  LSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVA--NHV 69

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             T  T++ L P T Y   + A NP G+S+          +++ 
Sbjct: 70  KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSG 113

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 12/105 (11%)

Query: 150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS 209
            L + P G P +       V    + + W+             Y +     S S+   + 
Sbjct: 11  DLSDLP-GPPSKPQVTD--VTKNSVTLSWQPGT--PGTLPASAYIIEAFSQSVSNSWQTV 65

Query: 210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
                    +       + GL P T Y  +VR  N  G    S  
Sbjct: 66  AN-------HVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPM 103

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 4e-12
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           + PK +  T+    S++I+W +P      +++Y + Y           L     G + +A
Sbjct: 3   DRPKGLAFTDVDVDSIKIAWESPQ---GQVSRYRVTYS--SPEDGIHELFPAPDGEEDTA 57

Query: 117 TLQPLLPATQYQVRLLAENPLGMSE 141
            LQ L P ++Y V ++A +    S+
Sbjct: 58  ELQGLRPGSEYTVSVVALHDDMESQ 82

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.7 bits (141), Expect = 4e-12
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           ++P+++ +T  S  S+ + WT        I  Y I +  S  +       + VP  +TS 
Sbjct: 2   DSPRDLMVTASSETSISLIWTKASG---PIDHYRITFTPSSGISSE----VTVPRDRTSY 54

Query: 117 TLQPLLPATQYQVRLLAENPLGMSE 141
           TL  L P  +Y + + AE     S 
Sbjct: 55  TLTDLEPGAEYIISITAERGRQQSL 79

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 7e-12
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P  P +  +T+     L + W+ P    +      I     E        K    G   +
Sbjct: 1   PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGF--KPKYDGEDLA 58

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
            T++ L  +T+Y+ +++A N  G S     ++ +T  +
Sbjct: 59  YTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPD 96

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-05
 Identities = 13/36 (36%), Positives = 14/36 (38%)

Query: 224 ELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
              +  L   TKY   V  YNS GK   SE     T
Sbjct: 58  AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT 93

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 1e-11
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P     +     + RS+ +SW  P   N  I  Y I+Y    E    +    +      +
Sbjct: 1   PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYY---EKEHNEFNSSMARSQTNT 57

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
           A +  L P   Y V++ A    G  +   ++   TL +
Sbjct: 58  ARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTD 95

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query: 226 RIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
           RI GL P   Y + VR     G G FS     +T  
Sbjct: 59  RIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLT 94

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 2e-11
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 60  KNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQ 119
           +++ +   +  SL ISW AP      +  Y I Y  +    P Q     VPGS+++AT+ 
Sbjct: 1   RDLEVVAATPTSLLISWDAPAVT---VRYYRITYGETGGNSPVQE--FTVPGSKSTATIS 55

Query: 120 PLLPATQYQVRLLAENPLGMSE 141
            L P   Y + + A    G S 
Sbjct: 56  GLKPGVDYTITVYAVTGRGDSP 77

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 6e-04
 Identities = 23/91 (25%), Positives = 29/91 (31%), Gaps = 12/91 (13%)

Query: 169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP 228
             PT LLI W A         +  Y + Y  + G+S         S       +    I 
Sbjct: 8   ATPTSLLISWDA-----PAVTVRYYRITYGETGGNSPVQEFTVPGS-------KSTATIS 55

Query: 229 GLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
           GL P   Y I V      G  P S   I+  
Sbjct: 56  GLKPGVDYTITVYAVTGRGDSPASSKPISIN 86

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 3e-11
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
           AP +++ T+ +  SL   WT P    T     +       +       +I +    +S  
Sbjct: 2   APTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVT-----PKEKTGPMKEINLAPDSSSVV 56

Query: 118 LQPLLPATQYQVRLLAENPLGMSETGAELQASTLE 152
           +  L+ AT+Y+V + A      S   A+   +TLE
Sbjct: 57  VSGLMVATKYEVSVYALKDTLTSR-PAQGVVTTLE 90

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 4e-11
 Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
            P ++R T     +++++W  P S +  +T ++++Y   +        ++ +  S  +  
Sbjct: 3   PPTDLRFTNIGPDTMRVTWAPPPSID--LTNFLVRYSPVKNEEDVA--ELSISPSDNAVV 58

Query: 118 LQPLLPATQYQVRLLAENPLGMSE 141
           L  LLP T+Y V + +      S 
Sbjct: 59  LTNLLPGTEYVVSVSSVYEQHEST 82

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.4 bits (135), Expect = 4e-11
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 56  PEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
             AP+++ + + +  +  + W  P   G   I  Y+++Y            K   P  + 
Sbjct: 2   TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANK--EPVERC 59

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEE 153
             T++ L    +   R++  N  G SE    LQ  T+ E
Sbjct: 60  GFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRE 98

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 5e-04
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 10/100 (10%)

Query: 155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKS 214
           P  AP+ +T +   V  T   +KW+ P R    G+      GY +      +        
Sbjct: 1   PTSAPQHLTVED--VTDTTTTLKWRPPDRIGAGGID-----GYLVEYCLEGSEEWVPANK 53

Query: 215 VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
             ++        +  L    +    V G N  G+   +  
Sbjct: 54  EPVERCG---FTVKDLPTGARILFRVVGVNIAGRSEPATL 90

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 4e-11
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 2/124 (1%)

Query: 42  GTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWP 101
             +       V + P  P ++ +T++  +S+Q+SWT     N+ IT   I         P
Sbjct: 3   SGSSGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPIT-KFIIEYEDAMHKP 61

Query: 102 TQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQA-STLEEAPNGAPR 160
                        +     L P   Y  R++A N +G S      +   T    P+  P 
Sbjct: 62  GLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPT 121

Query: 161 EVTS 164
              S
Sbjct: 122 SGPS 125

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 5e-11
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 1/98 (1%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMW-PTQPLKIIVPGSQT 114
              P  ++ +  S  +++I+W                Y    +   P          +  
Sbjct: 2   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 61

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLE 152
           S  +  L P T Y+  ++       S        +T E
Sbjct: 62  SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFE 99

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 15/107 (14%), Positives = 23/107 (21%), Gaps = 8/107 (7%)

Query: 155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKS 214
           P   P  V +    +    + I W          +        +  +             
Sbjct: 1   PMMPPVGVQASI--LSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN--- 55

Query: 215 VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
               N       + GL P T Y   V          +S      T E
Sbjct: 56  ---ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFE 99

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 5e-11
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 57  EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSA 116
           EAP+++   E + R+  ++WT P         Y++ + +           I++PG  TS 
Sbjct: 3   EAPRDLEAKEVTPRTALLTWTEPPVR---PAGYLLSFHTPGGQTQE----ILLPGGITSH 55

Query: 117 TLQPLLPATQYQVRLLAENPLGMSE 141
            L  L P+T Y  RL A     +  
Sbjct: 56  QLLGLFPSTSYNARLQAMWGQSLLP 80

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.7 bits (133), Expect = 6e-11
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
           +PK I  ++ +  S  +SWT P    + +  Y + Y     +    P  + V GS+T   
Sbjct: 3   SPKGISFSDITENSATVSWTPPR---SRVDSYRVSYV---PITGGTPNVVTVDGSKTRTK 56

Query: 118 LQPLLPATQYQVRLLAENPLGMSE 141
           L  L+P   Y V +++      SE
Sbjct: 57  LVKLVPGVDYNVNIISVKGFEESE 80

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 1e-10
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYS--GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
              P        +  ++ + W    +   NT I  + I Y+ ++    +   K +V G +
Sbjct: 2   VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 61

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
              ++  L P T Y +++   N  G SE    +   T
Sbjct: 62  YWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET 98

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 8e-08
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKS 214
           P   P    +D   V+ T +++KW   P  + N  + G+ + Y+ +   +      +   
Sbjct: 1   PVAGPYITFTDA--VNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDN-----DSDYK 53

Query: 215 VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
            ++         I  L P T Y I ++ +N  G+  FS   I  T
Sbjct: 54  KDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET 98

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 2e-10
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 3/86 (3%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           PE PKN+       + ++  W      +      +    ++ +    +          + 
Sbjct: 4   PEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKA---KRDTPTSC 60

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
                 +     +V + AEN LG   
Sbjct: 61  TVDYSTVYFVNIEVWVEAENALGKVT 86

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 2e-10
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 56  PEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
           P  P N+ +   EE S  L+++WT P   +  I +Y IQY++ +    +Q        ++
Sbjct: 5   PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 64

Query: 114 TSATLQPLLPATQYQVRLLAENPLGM---SETGAELQASTLEEAPNGAP 159
           +S T+Q L P T+Y  R+      G    S+   E    T E+ P+  P
Sbjct: 65  SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 113

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (129), Expect = 3e-10
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 56  PEAPKNIR-ITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIV----P 110
           P +P N+  +   ++ SL   W      +   +  +  ++S  +                
Sbjct: 5   PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64

Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
            +  S   + LL      + + AEN LG SE
Sbjct: 65  QNNCSIPRKNLLLYQYMAIWVQAENMLGSSE 95

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 3e-10
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 11/132 (8%)

Query: 37  ATNYHGTAEMTIQLLVQETPEAPKNIRITEESSRSLQISWTAP-YSGNTAITQYIIQYKS 95
           ++   G  E       +           ++  +R++ ++W+ P    N    +  +    
Sbjct: 2   SSGSSGDEETKA---FEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELY 58

Query: 96  SEEM-----WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
             E+           K +  G +T+ TL  L PA  Y  ++ AE              +T
Sbjct: 59  GYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTT 118

Query: 151 LEEAPN--GAPR 160
           L   P+    PR
Sbjct: 119 LSCEPDIPNPPR 130

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 4/125 (3%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +  + +    E   +   + V SD   +    +++ W  P             V  
Sbjct: 1   GSSGSSGDEETKAFEALLSNIVKPVASD---IQARTVVLTWSPPSSLINGETD-ESSVPE 56

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA 257
                  ++ +    K   +    E  + +  L P   Y   V+   +  KG  SE  I 
Sbjct: 57  LYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIF 116

Query: 258 RTNEG 262
            T   
Sbjct: 117 TTLSC 121

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 4e-10
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 56  PEAPKNIRITEE-SSRSLQISWTAP-YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
           P      R+     ++ +Q+ W  P   G + I+ Y ++    E+  P +       GS+
Sbjct: 2   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV----YQGSE 57

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
              T+  LLP   Y  RL A N +G      +   +T 
Sbjct: 58  VECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 95

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 7e-06
 Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 10/105 (9%)

Query: 158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL 217
            P       G     E+ ++W  PP       +  Y V                 +  E+
Sbjct: 3   GPCLPPRLQGRPKAKEIQLRWG-PPLVDGGSPISCYSVEMS---------PIEKDEPREV 52

Query: 218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
               E E  +  L P   Y+  +R  N +G GPFSE     T  G
Sbjct: 53  YQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 97

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 53.5 bits (127), Expect = 5e-10
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 51  LVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVP 110
           +VQ+ P APK   IT   +   +I W       + I  Y IQ+ +S            VP
Sbjct: 1   IVQDVPNAPKLTGITC-QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59

Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
            +  S+ +  + P   Y  R++A N +G S 
Sbjct: 60  NT-DSSFVVQMSPWANYTFRVIAFNKIGASP 89

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 5e-10
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
            +AP  I + + +  +  I+W  P      I    + Y   +       +   +   +  
Sbjct: 2   LDAPSQIEVKDVTDTTALITWFKPL---AEIDGIELTYGIKDVPGDRTTID--LTEDENQ 56

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
            ++  L P T+Y+V L++      S 
Sbjct: 57  YSIGNLKPDTEYEVSLISRRGDMSSN 82

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.0 bits (126), Expect = 6e-10
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPY-SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
             +  ++++ ++  R L+++W             Y +   + +E W            + 
Sbjct: 3   SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMV-------LEP 55

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
              L  L P T Y VR+    PLG      + +  T 
Sbjct: 56  RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS 92

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (97), Expect = 5e-06
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 15/106 (14%)

Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK 213
           A + +   +       +P +L + W      +  G L                L      
Sbjct: 1   AESLSGLSLKLVK--KEPRQLELTWAGSRPRNPGGNLSYE-------------LHVLNQD 45

Query: 214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
                   E  + +  L P T Y + VR    +G GPFS     RT
Sbjct: 46  EEWHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 91

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 7e-10
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
           AP+N       SR +  +W  P         Y ++Y    +         ++     S  
Sbjct: 4   APQNPNAKAAGSRKIHFNWLPPSG---KPMGYRVKYWIQGDSESEA---HLLDSKVPSVE 57

Query: 118 LQPLLPATQYQVRLLAENPLGMSETGAELQASTLE 152
           L  L P   Y++++ A    G     + +   T +
Sbjct: 58  LTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQ 92

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 6e-05
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 15/105 (14%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
           GAP+   +        ++   W  P          G  +GY++         S       
Sbjct: 3   GAPQNPNAKA--AGSRKIHFNWLPPS---------GKPMGYRVKYWIQGDSESEAHLLDS 51

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
                E    +  L PY  Y + V  Y + G+GP+S     RT++
Sbjct: 52  KVPSVE----LTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQ 92

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 9e-10
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
            P+  R+T+ +  ++ ISW         IT + +            P++  +     S T
Sbjct: 4   PPRRARVTDATETTITISWRTKTE---TITGFQVDAV---PANGQTPIQRTIKPDVRSYT 57

Query: 118 LQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
           +  L P T Y++ L   N    S     + AST
Sbjct: 58  ITGLQPGTDYKIYLYTLNDNARSSP-VVIDAST 89

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.6 bits (125), Expect = 9e-10
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 55  TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
             + P  I + + S     + WT P +    I                      +    +
Sbjct: 3   VIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKT-----TFRLQPPLS 57

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSE 141
             ++Q L P ++Y+V + A      S+
Sbjct: 58  QYSVQALRPGSRYEVSISAVRGTNESD 84

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P APK      E   S++++      G + I  Y+++Y++    W  +   I +P     
Sbjct: 1   PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPE---IRLPSGSDH 57

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
             L+ L    +Y+V ++AEN  G S+  A     T
Sbjct: 58  VMLKSLDWNAEYEVYVVAENQQGKSKA-AHFVFRT 91

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 1e-09
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 56  PEAPKNIRITEESSRS-LQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
              P N+ +        L +SW    + +  IT Y I    +        L+ +V   Q+
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTTPD--ITGYRITTTPTNGQQ-GNSLEEVVHADQS 58

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSE 141
           S T   L P  +Y V +        S 
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESV 85

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.001
 Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 11/96 (11%)

Query: 155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKS 214
           P   P  +  +    D   L + W+        G  +                       
Sbjct: 1   PLSPPTNLHLEA-NPDTGVLTVSWERSTTPDITGYRITTTPTNG----------QQGNSL 49

Query: 215 VELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGP 250
            E+ +  +       L+P  +Y + V       +  
Sbjct: 50  EEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESV 85

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 1e-09
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 54  ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQY---KSSEEMWPTQPLKIIVP 110
           E P  P N+ I+    RS+ + +   Y G T+I++++++       E        ++   
Sbjct: 9   ELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNE 68

Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
               S  +  L P T Y  R+   N +G S 
Sbjct: 69  PDARSMEVPDLNPFTCYSFRMRQVNIVGTSP 99

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 7/109 (6%)

Query: 146 LQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSL 205
           + +    E P G P  +      + P  + ++++       +      +    +      
Sbjct: 2   ISSGVPPELP-GPPTNLGISN--IGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEE 58

Query: 206 ALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
            L  + L +            +P L P+T Y+  +R  N VG  P S+P
Sbjct: 59  WLLIHQLSNEPDARSM----EVPDLNPFTCYSFRMRQVNIVGTSPPSQP 103

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 2e-09
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
           G       +P V+ PT + + W    +      + GY V Y+ +SG     ++ + ++++
Sbjct: 15  GDVLVRLHNPVVLTPTTVQVTWTVDRQ---PQFIQGYRVMYRQTSGLQ---ATSSWQNLD 68

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
                E    +  L     Y I VR Y +  +G  SE    RT E
Sbjct: 69  AKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 4e-07
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 68  SSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKI--IVPGSQTSATLQPLLPAT 125
           +  ++Q++WT        I  Y + Y+ +  +  T   +       ++ SA L  L    
Sbjct: 28  TPTTVQVTWTVDRQ-PQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGV 86

Query: 126 QYQVRLLAENPLGMSETGAELQASTLEEAP 155
            Y++++                  T EE+ 
Sbjct: 87  TYEIKVRPYFNEFQGMDSESKTVRTTEESG 116

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 51.5 bits (122), Expect = 2e-09
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 9/110 (8%)

Query: 153 EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTL 212
           + P   P  V       +P  L+I W   P    N     Y V ++          +   
Sbjct: 2   DVPFKNPDNVVGQG--TEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDI------PAAAW 53

Query: 213 KSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP-FIARTNE 261
           ++  + +  +  + I     + KY I V   N  G+   +    +  + E
Sbjct: 54  ENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGE 103

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 48.0 bits (113), Expect = 4e-08
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPY--SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
            + P N+        +L ISWT       N     Y + +K        +    I    Q
Sbjct: 5   FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWEN-NNIFDWRQ 63

Query: 114 TSATLQPLLPATQYQVRLLAENPLGMSE 141
            +  +       +Y ++++A N  G S 
Sbjct: 64  NNIVIADQPTFVKYLIKVVAINDRGESN 91

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 3e-09
 Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 1/84 (1%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKII-VPGSQT 114
             AP ++++    +    ISW    + +        + ++       +   ++ +   Q 
Sbjct: 3   LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE 62

Query: 115 SATLQPLLPATQYQVRLLAENPLG 138
              L+ L P TQY+ ++  +   G
Sbjct: 63  WICLETLTPDTQYEFQVRVKPLQG 86

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 3e-09
 Identities = 20/122 (16%), Positives = 34/122 (27%), Gaps = 14/122 (11%)

Query: 148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL 207
            S+    P GAP  V       +   + + W+ P   S +G +L Y     I +      
Sbjct: 1   GSSGSSGP-GAPSTVRISK---NVDGIHLSWEPP--TSPSGNILEYSAYLAIRTAQMQDN 54

Query: 208 SSYTLKSVELD--------NQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
            S  +                 +        T        +   N  G GP ++    + 
Sbjct: 55  PSQLVFMRIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQG 114

Query: 260 NE 261
           N 
Sbjct: 115 NS 116

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 4e-09
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 14/113 (12%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIV------ 109
           P AP  +RI++ +   + +SW  P S +  I +Y              P +++       
Sbjct: 8   PGAPSTVRISK-NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCG 66

Query: 110 -------PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
                     Q +              R+ A+N  G              ++ 
Sbjct: 67  LKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGNSKSG 119

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 6e-09
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
            P  + ITE  S+             + I++YI++++   +    +  +  +PG   S T
Sbjct: 2   GPVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWR--PKNSVGRWKEATIPGHLNSYT 59

Query: 118 LQPLLPATQYQVRLLAENPLGMSET 142
           ++ L P   Y+ +L++    G  E 
Sbjct: 60  IKGLKPGVVYEGQLISIQQYGHQEV 84

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 8e-09
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 7/117 (5%)

Query: 146 LQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSL 205
           ++ STL   P   P++VT   GV  P  + + W+ P              GY + +    
Sbjct: 1   VEFSTLPAGPPAPPQDVTVQAGV-TPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQ- 58

Query: 206 ALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEG 262
                 +  V         + +  L       + VR  ++ G+   S          
Sbjct: 59  -----RVAEVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELL 110

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 9e-09
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 3/100 (3%)

Query: 52  VQETPEAPKNIRITEE-SSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVP 110
             + P  P    +  +  S S +I+W  P     A     +   +  E       ++I  
Sbjct: 7   CPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMA--EGSNGNKWEMIYS 64

Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
           G+        L P   Y++R+   +  G S     L   T
Sbjct: 65  GATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 104

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 11/111 (9%)

Query: 149 STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS 208
           +T  + P G P + +   G +      I W  P             +   +   +  +  
Sbjct: 5   TTCPDKP-GIPVKPSV-KGKIHSHSFKITWDPPKDNGG------ATINKYVVEMAEGSNG 56

Query: 209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
           +          +         L P   Y + V   +  G+   SE  + +T
Sbjct: 57  NKWEMIYSGATRE---HLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 104

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-08
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P+  K  ++T  S+   Q++W  P S  T +T+Y +++   E        +I   G   S
Sbjct: 1   PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSM-----QICYCGPGLS 55

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
             ++ L PAT Y  R+ A + +G       +   T
Sbjct: 56  YEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT 90

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-08
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 54  ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKS---SEEMWPTQPLKIIVP 110
           E P  P  +     SS   Q+SW  P   N  IT Y + Y                ++  
Sbjct: 1   EVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN 60

Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLGMSE 141
                  ++ L  +  Y+  + A N  G   
Sbjct: 61  PKNRMLLIENLRESQPYRYTVKARNGAGWGP 91

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
             P  +  +   V  T   + W  P     NG +  Y+V Y + +  +  +       V 
Sbjct: 4   SEPGRLAFNV--VSSTVTQLSWAEPAE--TNGEITAYEVCYGLVNDDNRPIGPMK--KVL 57

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
           +DN     L I  L     Y   V+  N  G GP  E  I    +
Sbjct: 58  VDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQ 102

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (113), Expect = 6e-08
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 1/101 (0%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
              P    + + +  S+++ W            +  +++   EE        +I  G  T
Sbjct: 16  LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYAT 75

Query: 115 SATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
              ++ L P T Y+ RL   +P G  E    +  +T  E+ 
Sbjct: 76  RHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 16/106 (15%), Positives = 26/106 (24%), Gaps = 8/106 (7%)

Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK 213
            P   P         V    + + W    +E             Q    S          
Sbjct: 14  VPLSKPHPPVVGK--VTHHSIELYWDLEQKEKR------QGPQEQWLRFSIEEEDPKMHS 65

Query: 214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
              +   Y     + GL P T Y   ++  +  G+  +S      T
Sbjct: 66  YGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT 111

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.3 bits (111), Expect = 8e-08
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 59  PKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE----------MWPTQPLKII 108
           P    +T  S  S+ + W  P +    I  + +QY+   +          +   +P    
Sbjct: 3   PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNS 62

Query: 109 VPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAE 145
             G   +A++  L P   Y+ R+LA      ++    
Sbjct: 63  ELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 99

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 13/105 (12%), Positives = 27/105 (25%), Gaps = 12/105 (11%)

Query: 155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL-----SS 209
           P   P  VT     +    ++++W      +    ++ + V Y++               
Sbjct: 2   PPTPP-NVTR----LSDESVMLRWM--VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIP 54

Query: 210 YTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
           Y       +        +  L P   Y   +    S      S  
Sbjct: 55  YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 99

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 10/59 (16%), Positives = 16/59 (27%)

Query: 4   RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKNI 62
           +     +        E+ I       +G   C  T        +  L V E+     NI
Sbjct: 54  QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 112

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 1e-07
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQ---YIIQYKSSEEMWPTQPLKIIVPGS 112
           P AP N+ +    S +L ++W+ PY  +  +     Y +   S  +    +   +     
Sbjct: 2   PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEP 61

Query: 113 QTSATLQPLLPATQYQVRLLAENPLGMSE 141
                   L     Y+ R+ A      + 
Sbjct: 62  SLRIAASTLKSGISYRARVRAWAQAYNTT 90

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 4e-04
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 6/98 (6%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
            AP  +T     V  T LL      P +++    L Y V     +  +            
Sbjct: 3   RAPGNLTVHT-NVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPA-----DFRIYNV 56

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
              +    +    L     Y   VR +       +SE 
Sbjct: 57  TYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEW 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 10 QVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK 60
          +V      S+L I    ++  G  + L  N  G+ +  + L V + P+ P 
Sbjct: 48 KVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 98

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 56  PEAPKNIRIT----EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
           PE P+N+ +     ++    L + W+ P   +     + ++Y+   +    +  +I   G
Sbjct: 3   PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTG 62

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGM-SETGAELQAST 150
            QT   +  L P  +Y V+   +   G  S    E     
Sbjct: 63  HQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVEM 102

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 14/108 (12%)

Query: 157 GAPREVTSDPGVVDPTE--LLIKWKAPPRESWNG--VLLGYDVGYQISSGSSLALSSYTL 212
             PR +T +   +   +  L +KW  P           + Y++  +              
Sbjct: 4   EPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEE-------- 55

Query: 213 KSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK-GPFSEPFIART 259
                   ++ + ++  L P  KY +  R     G    +S+      
Sbjct: 56  -WEIHFTGHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVEM 102

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-07
 Identities = 15/102 (14%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 56  PEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
           P+ P+N+       + R L+++W  P +     +  +  +     +   Q  + +   + 
Sbjct: 8   PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQW-QHVELSNG 66

Query: 114 TSATLQPLLPATQYQVRLLAENPLG--MSETGAELQASTLEE 153
           T+ T+       +Y +++ A++      S+      A+   E
Sbjct: 67  TAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTE 108

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.7 bits (104), Expect = 5e-07
 Identities = 16/86 (18%), Positives = 29/86 (33%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
              P+ + I E S  ++ + W+     +  +      Y              I      S
Sbjct: 7   MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARS 66

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
             + PL  AT Y+ +L + +    SE
Sbjct: 67  FKIAPLETATMYEFKLQSFSAASASE 92

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 7e-07
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 22/113 (19%)

Query: 169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLAL----------------SSYTL 212
               ++L++W+ P        LLG+ + Y+ +   ++                      L
Sbjct: 13  TSFDKILLRWE-PYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPL 71

Query: 213 KSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVG-----KGPFSEPFIARTN 260
           +S +  +Q      + GL P+T+YAI V+   +        G  S+    +T+
Sbjct: 72  RSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD 124

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 7e-07
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 8/100 (8%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P+ P  +R    +     + W  P +       Y IQ  +          +   PGS   
Sbjct: 1   PDGPTQLRALNLTEGFAVLHWKPPQNPV---DTYDIQVTAPGAPPL----QAETPGSAVD 53

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             L  L+  T Y   +       ++   A +  +T  EAP
Sbjct: 54  YPLHDLVLHTNYTATVRGLRGPNLTSP-ASITFTTGLEAP 92

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 8/47 (17%), Positives = 18/47 (38%)

Query: 8   REQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
           R +V      S   +    ++D G  +    N  G  ++ + + V +
Sbjct: 84  RVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-06
 Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 55  TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMW------PTQPLKII 108
           +      + +T+ ++ SL+++W AP     A   +++++             P    +++
Sbjct: 3   SRPRLSQLSVTDVTTSSLRLNWEAP---PGAFDSFLLRFGVPSPSTLEPHPRPLLQRELM 59

Query: 109 VPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
           VPG++ SA L+ L   T Y + L        +++  +  A TL
Sbjct: 60  VPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADS-IQGTARTL 101

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-06
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
             P  +T      +P  L + W+ P   + +   L +++ Y+     +            
Sbjct: 3   DPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMV------ 56

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEP 254
                +    I       ++ + +R     G+G +SE 
Sbjct: 57  --KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEW 92

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 56  PEAPKNIRIT--EESSRSLQISWTAPYS--GNTAITQYIIQYKSSEEMWPTQPLKIIVPG 111
           P+ P NI +T    + R L ++W  P+S   +    ++ ++Y++      T     +V  
Sbjct: 2   PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTW---MVKD 58

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGM---SETGAELQASTLEEA 154
            Q    +       ++ V+L A+   G    SE   E   +   E+
Sbjct: 59  LQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTES 104

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.3 bits (101), Expect = 2e-06
 Identities = 14/57 (24%), Positives = 22/57 (38%)

Query: 1  MFSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE 57
             + +++     +G    L I  V   D G  +  A N +GT E  + L V    E
Sbjct: 40 RELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P AP N+  T +++ S+ +SWTA  + N  +T Y +   +           +    + T+
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTAS-TDNVGVTGYDVYNGT----------ALATTVTGTT 52

Query: 116 ATLQPLLPATQYQVRLLAENPLG-MSETGAELQAST 150
           AT+  L   T Y   + A++  G +S     +   T
Sbjct: 53  ATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 22/107 (20%)

Query: 154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLK 213
           AP  AP  + S       + + + W A    + N  + GYDV    +  +++  ++ T  
Sbjct: 3   AP-TAPTNLASTA--QTTSSITLSWTAS---TDNVGVTGYDVYNGTALATTVTGTTAT-- 54

Query: 214 SVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK-GPFSEPFIART 259
                        I GL   T Y   V+  ++ G     S     +T
Sbjct: 55  -------------ISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-06
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
              ++   + +  S+ + WT     ++ I  Y I   ++ E  P    +  V  S    T
Sbjct: 8   QLTDLSFVDITDSSIGLRWT--PLNSSTIIGYRITVVAAGEGIPIF--EDFVDSSVGYYT 63

Query: 118 LQPLLPATQYQVRLLAENPLGMSETGAELQAST 150
           +  L P   Y + ++     G S     L   T
Sbjct: 64  VTGLEPGIDYDISVITLINGGESAP-TTLTQQT 95

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-06
 Identities = 13/88 (14%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
           P AP+N+ + + S   L+++W   +       ++++QY++  +   T+         +  
Sbjct: 3   PWAPENLTLHKLSESQLELNWNNRF--LNHCLEHLVQYRTDWDHSWTEQ----SVDYRHK 56

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETG 143
            +L  +    +Y  R+ +          
Sbjct: 57  FSLPSVDGQKRYTFRVRSRFNPLCGSAQ 84

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 3e-06
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 17  ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP 56
              L +      ++G  + LA N  G A  +I     + P
Sbjct: 62  HGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 4e-06
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 24 NVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
          +V   D G  S +  N  G  E    L +Q+
Sbjct: 61 SVQASDEGNYSVVVENSEGKQEAEFTLTIQK 91

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 8e-06
 Identities = 8/55 (14%), Positives = 13/55 (23%)

Query: 1   MFSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQET 55
              +            + EL I +     +G   C  +           L V E 
Sbjct: 55  QHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA 109

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 8e-06
 Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTA-ITQYIIQY----KSSEEMWPTQPLKIIVP 110
           P  P++++I+        ++W+       +                 +        ++  
Sbjct: 6   PPEPRDLQIST-DQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSN 64

Query: 111 GSQTSATLQPLLPATQYQVRLLAENPLGMSETG 143
            SQ +   + L+P++ Y  R+      G   +G
Sbjct: 65  TSQATLGPEHLMPSSTYVARVRTRLAPGSRLSG 97

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-05
 Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 15/126 (11%)

Query: 138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGY 197
           G S +   +  +T +  P+  P  V  +      T++L+ W+          + GY V Y
Sbjct: 1   GSSGSSGTVNVTTKKTPPSQPPGNVVWN---ATDTKVLLNWEQVKAMENESEVTGYKVFY 57

Query: 198 QISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPF-I 256
           + SS           ++               L     Y I V+     G G  SE   I
Sbjct: 58  RTSS-----------QNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRI 106

Query: 257 ARTNEG 262
            R    
Sbjct: 107 PRITSS 112

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-05
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 54  ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQY--KSSEEMWPTQPLKIIVPG 111
           +TP +P +I   E  S + Q+ +  P +                 EE+W ++        
Sbjct: 1   DTPSSP-SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 59

Query: 112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQASTL 151
            +   T+  L P T Y VRL A N  G+ E  A  +  T 
Sbjct: 60  MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 99

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 0.004
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE 216
            +P     +P     +   +++  P       +L  Y   ++           Y  K   
Sbjct: 4   SSPSIDQVEPY---SSTAQVQFDEPEATGGVPIL-KYKAEWRAVGEEVWHSKWYDAKEAS 59

Query: 217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIART 259
           ++        I GL P T YA+ +   N  G G  S     +T
Sbjct: 60  MEGIV----TIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 98

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQT 114
            + P        +  ++ + W  P   G   IT YI++ +  +               + 
Sbjct: 3   IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKR--DLPNGRWLKANFSNILEN 60

Query: 115 SATLQPLLPATQYQVRLLAENPLGM----SETGAELQASTLEEA 154
             T+  L     Y+ R++A+N  G     SE    +      EA
Sbjct: 61  EFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 104

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 14/52 (26%), Positives = 17/52 (32%), Gaps = 8/52 (15%)

Query: 1  MFSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
             R T+ +  L         I  V   D G   C ATN HG       + V
Sbjct: 45 SGGRATVTDSGLV--------IKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 5e-05
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 2/86 (2%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
             AP ++++T++         T           + IQY+     W     + +      S
Sbjct: 5   QMAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQN--AHS 62

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSE 141
             L  L P+T+Y  R+          
Sbjct: 63  MALPALEPSTRYWARVRVRTSRTGYN 88

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 24  NVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
            V   D    +C A N  G A  T +LLV+ 
Sbjct: 71  EVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 56  PEAPKNIRIT------EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIV 109
           P+ P  +  T            +Q+ W AP + +      +++Y+   +       K++ 
Sbjct: 1   PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMD 60

Query: 110 PGSQTSATLQPLLPATQYQVRLLAEN 135
           P   TS  +  L    +Y+VR+ ++ 
Sbjct: 61  PILTTSVPVYSLKVDKEYEVRVRSKQ 86

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.6 bits (89), Expect = 6e-05
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
              L I NV  +D GT  C A N  G      ++++ 
Sbjct: 53 SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 7e-05
 Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 2/84 (2%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSAT 117
            P N+ I   +  +  + W         +           +        I +     + +
Sbjct: 3   TPTNVTIESYN-MNPIVYWEYQIMPQVPVFTVE-VKNYGVKNSEWIDACINISHHYCNIS 60

Query: 118 LQPLLPATQYQVRLLAENPLGMSE 141
                P+    VR+ A      S 
Sbjct: 61  DHVGDPSNSLWVRVKARVGQKESA 84

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 1  MFSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
          + +     E+ +     SEL I NV + D     C+A N  G  + +I L V  
Sbjct: 46 IENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 4   RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
           R  + ++ + +G ++ L I NV   D G  +C   ++    E  ++L V++
Sbjct: 68  RTELLKESIGEGKVA-LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 117

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 9/50 (18%), Positives = 21/50 (42%)

Query: 1  MFSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQL 50
          +      R ++  +G    L I    + D+   S + T    +A++++ L
Sbjct: 40 IIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 89

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 24 NVLRQDSGTLSCLATNYHGTAEMTIQLLVQE 54
          +V  +DS ++   A N  G       LLVQ 
Sbjct: 67 DVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.4 bits (83), Expect = 5e-04
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
             EL  + ++ +DSG   C+A N HGT   + +L VQ
Sbjct: 51 SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 6e-04
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 8   REQVLEDGMISELGIANVLRQD-SGTLSCLATNYHGTAEMTIQLLV 52
           R  V      SEL I N+  +   G   C  T+  G+ +  I L V
Sbjct: 55  RFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 56  PEAPKNI--RITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQ 113
            +AP  +  R+ +ES   +      P +  T+  +Y +   +       Q   + +   +
Sbjct: 5   LDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQR--VEILEGR 62

Query: 114 TSATLQPLLPATQ--YQVRLLAENPLGMS 140
           T   L  L   T+  + VR     P    
Sbjct: 63  TECVLSNLRGRTRYTFAVRARMAEPSFGG 91

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 14  DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
           D  I  L I NV  +D+G  +CLA N  G +  +  L V
Sbjct: 70  DKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 8e-04
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV 52
                L + +V+  D G  +C+  N +G+   T  L V
Sbjct: 58 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 9e-04
 Identities = 10/48 (20%), Positives = 16/48 (33%)

Query: 14  DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPKN 61
           +     L        ++G  + +A N  GTA  TI     + P     
Sbjct: 58  EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDE 105

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 9e-04
 Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 3/100 (3%)

Query: 56  PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTS 115
              P+ +     + R + + W  P      +  Y+++ +   + W      +    ++  
Sbjct: 8   LSPPRGLVAVR-TPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETEL- 65

Query: 116 ATLQPLLPATQYQVRLLAENPLGMSETGAELQASTLEEAP 155
             +  L+    Y+ RL+A     +S+       ST   + 
Sbjct: 66  -LVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 3/85 (3%)

Query: 58  APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMW-PTQPLKIIVPGSQTSA 116
           +P ++   E       + W  P    +  T Y +           +            +A
Sbjct: 6   SPPSVWF-EAEFFHHILHW-TPIPQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTA 63

Query: 117 TLQPLLPATQYQVRLLAENPLGMSE 141
               L  +  Y+ R+ A +    S+
Sbjct: 64  VTLDLYHSNGYRARVRAVDGSRHSQ 88

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 1   MFSRYTIREQVLEDGMISELGIANVLR-QDSGTLSCLATNYHGTAEMTIQLLVQETPEAP 59
              RYT+     E+G+IS L I+N++R       +C A N  G+    I+L  Q +  + 
Sbjct: 52  TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSG 111

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 10/110 (9%)

Query: 152 EEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYT 211
           E   +     VT +  + +   + + W+ P   +   VL                     
Sbjct: 1   EAKADDIVGPVTHE--IFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDE-------ELH 51

Query: 212 LKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE 261
           L         E   R+ GL+P     + +R  +  G G ++EP      +
Sbjct: 52  LCDTRKHFALERGCRLRGLSPGNYS-VRIRATSLAGNGSWTEPTYFYVTD 100

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ 53
              L I NV   D+GT  C  +N     + T  L VQ
Sbjct: 52 FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.76
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.76
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.76
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.74
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.73
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.73
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.72
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.71
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.7
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.69
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.69
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.69
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.69
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.69
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.67
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.67
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.67
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.67
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.66
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.66
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.65
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	99.64
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.64
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.63
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.63
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.62
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.62
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.62
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.62
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.61
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.61
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.61
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.6
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.6
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.6
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.6
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.59
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.59
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.58
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	99.58
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.57
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.57
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.57
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.57
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.57
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.56
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.56
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.56
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.56
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.56
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.55
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.55
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.54
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.54
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.53
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.53
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.53
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.52
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.52
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.51
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.51
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.51
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.51
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.5
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.5
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.5
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.5
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.49
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.49
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.49
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.49
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	99.48
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	99.48
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.48
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.48
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.48
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.47
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.47
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.46
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.46
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	99.46
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.46
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.46
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.46
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.45
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.45
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.45
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.45
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.44
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	99.44
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.43
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.43
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.42
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.42
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.41
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.41
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.4
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.4
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.39
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	99.39
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.39
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.39
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.38
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.37
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.37
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.35
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.34
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.33
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.33
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	99.32
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.32
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.32
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.32
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.31
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.31
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.31
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.3
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.3
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.29
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.29
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.27
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	99.26
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	99.26
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	99.26
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.25
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.25
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.24
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.22
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.22
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.21
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	99.2
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	99.15
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	99.14
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.14
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	99.12
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	99.09
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.07
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	99.06
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	99.04
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.03
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.96
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.85
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.65
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.53
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.51
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.25
d2qfra1	112	Purple acid phosphatase, N-terminal domain {Kidney	98.21
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.13
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.1
d1xzwa1	119	Purple acid phosphatase, N-terminal domain {Sweet	98.04
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.04
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	97.95
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.94
d2avga1	110	Cardiac myosin binding protein C, different domain	97.93
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.92
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	97.92
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.9
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	97.9
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	97.87
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	97.8
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	97.78
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	97.77
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.74
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	97.73
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.72
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.71
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.7
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.69
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	97.63
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	97.62
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	97.62
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	97.58
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.56
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.5
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	97.5
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	97.38
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.38
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	97.25
d1f6fb1	96	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	97.23
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	97.23
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	97.21
d2qfra1	112	Purple acid phosphatase, N-terminal domain {Kidney	97.21
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.2
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	97.2
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	97.17
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	97.13
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	97.1
d2hyma1	109	Interferon-alpha/beta receptor beta chain {Human (	97.1
d2hyma1	109	Interferon-alpha/beta receptor beta chain {Human (	97.08
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.03
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	97.02
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.0
d2c4fu1	116	Extracellular region of human tissue factor {Human	96.99
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	96.97
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	96.97
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	96.96
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	96.94
d2hfta1	106	Extracellular region of human tissue factor {Human	96.9
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.87
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	96.84
d1xzwa1	119	Purple acid phosphatase, N-terminal domain {Sweet	96.83
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	96.8
d1f6fb1	96	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	96.8
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	96.78
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	96.78
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	96.77
d1a21a1	103	Extracellular region of human tissue factor {Rabbi	96.76
d1pd6a_	94	Cardiac myosin binding protein C, different domain	96.58
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	96.43
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.27
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	96.22
d1a21a1	103	Extracellular region of human tissue factor {Rabbi	96.13
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	96.1
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	96.09
d2hfta1	106	Extracellular region of human tissue factor {Human	96.06
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	95.94
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	95.75
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	95.65
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	95.36
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	95.09
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	94.95
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	94.9
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	94.56
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	94.52
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	94.31
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	94.16
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	93.96
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	93.63
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	93.58
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	93.29
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	93.24
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	93.21
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	93.14
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	92.99
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	92.84
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	92.71
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	92.68
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	92.53
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	92.49
d2c4fu1	116	Extracellular region of human tissue factor {Human	92.38
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	92.23
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	92.23
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	92.14
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	92.08
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	92.05
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	91.99
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	91.9
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	91.68
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	91.35
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	91.0
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	90.95
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	90.93
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	90.71
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	90.7
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	90.63
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	90.61
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	90.55
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	90.52
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	90.4
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	90.38
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	90.23
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	90.12
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	90.01
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	89.96
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	89.95
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	89.6
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	89.5
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	89.49
d1axib1	99	Growth hormone receptor {Human (Homo sapiens) [Tax	89.47
d8faba1	103	Immunoglobulin light chain lambda variable domain,	89.45
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	89.42
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	89.41
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	89.36
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	89.21
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	89.11
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	89.1
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	89.07
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	88.96
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	88.95
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	88.88
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	88.83
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	88.76
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	88.66
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	88.64
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	88.34
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	88.14
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	88.11
d2b5ic2	96	Cytokine receptor common gamma chain {Human (Homo	87.84
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	87.31
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	86.95
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	86.81
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	86.8
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	86.56
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	86.5
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	86.38
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	86.35
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	85.9
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	85.82
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	85.58
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	85.5
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	85.31
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	84.89
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	84.58
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	84.05
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	83.13
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	83.09
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	83.09
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	83.05
d1axib1	99	Growth hormone receptor {Human (Homo sapiens) [Tax	82.5
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	82.36
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	82.36
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	82.36
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	82.24
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	81.84
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	81.79
d2gysa3	99	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	81.78
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	81.7
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	81.39
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	81.2
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	81.16
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	81.12
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	81.02
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	80.85
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	80.75
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	80.52
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	80.49
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	80.34
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	80.16
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	80.09
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	80.08
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	80.06

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.7e-19  Score=118.03  Aligned_cols=112  Identities=26%  Similarity=0.404  Sum_probs=90.7

Q ss_pred             eEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEE
Q psy6638         146 LQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGEL  225 (273)
Q Consensus       146 ~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (273)
                      +.++|..++|..+|.++++..  .+.+++.|+|++|.....+|.+.+|.|+|+..+...       .............+
T Consensus         2 v~v~T~~~~P~~~P~~v~~~~--~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~-------~~~~~~~~~~~~~~   72 (119)
T d1x5ha1           2 VAVRTLSDVPSAAPQNLSLEV--RNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKS-------DVTETLVSGTQLSQ   72 (119)
T ss_dssp             CCCCCCCSSCCCCCEEEEEEC--CSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEE-------EEECCBCCTTCCEE
T ss_pred             EEEEcCCCCCCCCCcCeEEEE--ecCcEEEEEEEcccccCCCCCEEEEEEEEeeccccc-------ceeeeecCCCccEE
Confidence            345677778888899999988  899999999999876556889999999998875421       11122234456789


Q ss_pred             EcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         226 RIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       226 ~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      .|.+|+|++.|.|+|+|+|..|.|++|+.+.++|.++.|..
T Consensus        73 ~i~~L~p~t~Y~~~V~A~n~~G~G~~S~~~~~~T~~~~~~~  113 (119)
T d1x5ha1          73 LIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDE  113 (119)
T ss_dssp             EEECCCSSCEEEEECEEEETTEEEEECCCEEEECCSSCCCC
T ss_pred             EeCCCCCCCEEEEEEEEEcCCcCCCCCCCEEEEeCCCCCCC
Confidence            99999999999999999999999999999999998766543

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.7e-18  Score=109.86  Aligned_cols=108  Identities=35%  Similarity=0.565  Sum_probs=86.5

Q ss_pred             EecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcC
Q psy6638         149 STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP  228 (273)
Q Consensus       149 ~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  228 (273)
                      .|.+.+|+.+|.++.+..  .+.+++.|.|++|.....++.+.+|.|+|+..+........  .. ..........++|.
T Consensus         2 ~T~~~~P~~pP~~v~v~~--~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~i~   76 (109)
T d1va9a1           2 STEEAAPDGPPMDVTLQP--VTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYS--IV-EMKATGDSEVYTLD   76 (109)
T ss_dssp             CSSCCCCSSCCEEEEEEE--CSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCB--CC-BCCCCSSEEEEEEE
T ss_pred             CCcCCCCCCCCcCcEEEE--ecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceee--ee-EEecCCCeeEEEEC
Confidence            456778888999999988  89999999999987766678999999999987654322111  11 11123346789999


Q ss_pred             CCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         229 GLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       229 ~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      +|+|++.|.|+|+|.|..|.|++|+++.++|.+
T Consensus        77 ~L~p~t~Y~~~V~a~n~~G~g~~S~~v~~~T~e  109 (109)
T d1va9a1          77 NLKKFAQYGVVVQAFNRAGTGPSSSEINATTLE  109 (109)
T ss_dssp             SCCSSCCEEEEEEEEETTEECCCCCCEECCCCS
T ss_pred             CCCcceEEEEEEEEEcCCcCCCCCCCEEEEcCC
Confidence            999999999999999999999999999999864

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.76  E-value=8.1e-18  Score=107.20  Aligned_cols=102  Identities=19%  Similarity=0.350  Sum_probs=81.9

Q ss_pred             CCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCc
Q psy6638         153 EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP  232 (273)
Q Consensus       153 ~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  232 (273)
                      ++|..+|.++++..  .+.+++.|+|+++.....+|.+.+|.|.|+..+...      .+............++|.+|.+
T Consensus         2 ~~P~~~P~~v~~~~--~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~------~~~~~~~~~~~~~~~~i~~L~p   73 (105)
T d1cfba2           2 DVPFKNPDNVVGQG--TEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAA------AWENNNIFDWRQNNIVIADQPT   73 (105)
T ss_dssp             CCCSCCCSCCEEEC--SSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTC------CCEEEEECCTTCCEEEECSCCS
T ss_pred             CCCCCCCcCeEEEE--ccCCeEEEEEeCCChhhcCceEEEEEEEeeeecccc------ceeEEEecCCCccEEEECCCCC
Confidence            46777889999988  899999999998776666889999999999876543      1223333445567999999999


Q ss_pred             cceEEEEEEEecCCCcCCCCcc-EEEEcCCC
Q psy6638         233 YTKYAIVVRGYNSVGKGPFSEP-FIARTNEG  262 (273)
Q Consensus       233 ~~~Y~~~v~a~n~~g~~~~s~~-~~~~t~~~  262 (273)
                      ++.|.|+|+|.|..|.|++|.. +..+|.++
T Consensus        74 ~t~Y~~~V~A~N~~G~gp~S~~~v~~~t~Ed  104 (105)
T d1cfba2          74 FVKYLIKVVAINDRGESNVAAEEVVGYSGED  104 (105)
T ss_dssp             SCEEEEEEEEEETTEECSSCCCCEEEESSSC
T ss_pred             CCEEEEEEEEEeCCcCCCCCCCcEeEcCCCC
Confidence            9999999999999999998865 55577664

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-18  Score=114.73  Aligned_cols=115  Identities=29%  Similarity=0.356  Sum_probs=89.6

Q ss_pred             ecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCC
Q psy6638         150 TLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG  229 (273)
Q Consensus       150 ~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  229 (273)
                      +.+++|+.+|.++.+..  .+.+++.|+|+++.....++.+..|.+.++..........................++|.+
T Consensus         9 s~e~~P~~~P~~v~v~~--~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   86 (125)
T d1uena_           9 SGEDLPMVAPGNVRVNV--VNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPG   86 (125)
T ss_dssp             SCCCCCCCCCSSCEEEE--EETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEES
T ss_pred             ccCcCCCCCCcccEEEE--ecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECC
Confidence            44668888899999988  8999999999998764457789999999987654332222222222222334457899999


Q ss_pred             CCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         230 LTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       230 L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      |.|++.|.|+|+|+|..|.|++|+++.|+|.++.|+.
T Consensus        87 L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~pp~  123 (125)
T d1uena_          87 LEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGPS  123 (125)
T ss_dssp             CCSSCEEEEEEEEEESSCEEEECCCEEEECCCCCSSC
T ss_pred             CCCCCEEEEEEEEEeCCcccCCCCCEEEECCCCCcCC
Confidence            9999999999999999999999999999999988763

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.1e-18  Score=111.51  Aligned_cols=113  Identities=21%  Similarity=0.416  Sum_probs=89.2

Q ss_pred             CCCCCC-cceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEE
Q psy6638         138 GMSETG-AELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE  216 (273)
Q Consensus       138 g~~~~s-~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~  216 (273)
                      |.|.++ .++.++|..++| .+|.++.+..  .+.+++.|.|++|..  .+|.|.+|.|+|+..+.....      ....
T Consensus         3 G~G~pss~~v~~~T~~~~P-~~P~~~~~~~--~~~~sv~v~W~~P~~--~~g~i~~Y~i~y~~~~~~~~~------~~~~   71 (117)
T d1wfoa1           3 GDGSPSHPPILERTLDDVP-GPPMGILFPE--VRTTSVRLIWQPPAA--PNGIILAYQITHRLNTTTANT------ATVE   71 (117)
T ss_dssp             CCCCCCCCCSCCCCSCCCC-CCCCCCEEEE--ECSSEEEEECCCCSC--CCSCCCEEEEEEEESSCCCSC------CCEE
T ss_pred             cCCCCCCCCEEEECCCCCC-cCCCCcEEEE--ecCCEEEEEEECCCC--CCCceEEEeeeeeeccCCCce------EeEE
Confidence            556554 456777777777 5888999888  899999999999876  478899999999987654321      1122


Q ss_pred             ecCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         217 LDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       217 ~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      ........+++.+|+|++.|.|+|+|+|..|.|++|+.+.++|.+
T Consensus        72 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~tT~e  116 (117)
T d1wfoa1          72 VLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEK  116 (117)
T ss_dssp             EECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCSS
T ss_pred             ecCCceEEEEECCCCCCCEEEEEEEEECCCcCCCCcCCEEEECCC
Confidence            234446789999999999999999999999999999988888864

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.5e-18  Score=109.08  Aligned_cols=114  Identities=21%  Similarity=0.265  Sum_probs=88.3

Q ss_pred             CCCCCCcceEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEe
Q psy6638         138 GMSETGAELQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL  217 (273)
Q Consensus       138 g~~~~s~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~  217 (273)
                      |.|.++..+.++|....|..+|..+ +..  .+.+.+.|.|+++.....++.+.+|.|+|+..+....       .....
T Consensus         1 G~s~~S~~v~v~T~~~~P~~pp~~~-~~~--~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~-------~~~~~   70 (117)
T d1wj3a_           1 GSSGSSGTVNVTTKKTPPSQPPGNV-VWN--ATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNV-------QVLNT   70 (117)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCCCCSC-BCC--EETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSC-------EEEEE
T ss_pred             CcCCCCCCEEEEcCCCCcCCCCcce-EEe--ecCCEEEEEEeecccccCCCceeEEEEEEEecCCCce-------eeeec
Confidence            4567788899999888887677655 344  5788999999987665568899999999998765431       11111


Q ss_pred             cCCcccEEEcCCCCccceEEEEEEEecCCCcCCCCccEEE-EcCCCCCc
Q psy6638         218 DNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIA-RTNEGDFL  265 (273)
Q Consensus       218 ~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~-~t~~~~P~  265 (273)
                          ...+.+.+|.+++.|.|+|+|.|..|.|++|+.+.+ ++.+++|+
T Consensus        71 ----~~~~~~~~L~p~t~Y~~~V~A~n~~G~G~~S~~v~v~~~~~~~Ps  115 (117)
T d1wj3a_          71 ----NKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPS  115 (117)
T ss_dssp             ----SSSEEEEECCCSSCEEEEEEEEESSCCCCBCCCEEECCCCCCCSC
T ss_pred             ----eeeEEEeeccCCcEEEEEEEEEcCCccCCCCCCEEEeccCCCCCC
Confidence                245677789999999999999999999999988776 56677775

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.4e-17  Score=106.35  Aligned_cols=106  Identities=26%  Similarity=0.374  Sum_probs=81.4

Q ss_pred             EecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcC
Q psy6638         149 STLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIP  228 (273)
Q Consensus       149 ~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  228 (273)
                      .|.+.+|..||.++.+.....+..++.|+|++|..  .++.+.+|.++|+.........    +... ........++|.
T Consensus         5 ~T~~~~P~~pP~~~~v~~~~~~~~sv~v~W~~P~~--~~g~i~~Y~i~~~~~~~~~~~~----~~~~-~~~~~~~~~~i~   77 (111)
T d1x5ka1           5 TTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSE--ANGKITGYIIYYSTDVNAEIHD----WVIE-PVVGNRLTHQIQ   77 (111)
T ss_dssp             CSCCCCCCSCCEEEEEEECSSCTTCEEEEEECCSC--CSSCCCEEEEEEESCSSSCTTT----SEEE-EESTTCSEEEEC
T ss_pred             EeCCCCCCCCCCCcEEEEecCCCCEEEEEEEcccc--CCCceeeeEEeeeecCCCCcce----eEEE-EeCCCeeEEEEC
Confidence            45566788889888764311467899999999876  4789999999998765543211    1111 123345789999


Q ss_pred             CCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         229 GLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       229 ~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      +|.|++.|.|+|+|+|..|.|++|+.+.++|++
T Consensus        78 ~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~T~~  110 (111)
T d1x5ka1          78 ELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK  110 (111)
T ss_dssp             SCCSSSEEEEEEEEECSSCBCCCCCCEEEECCC
T ss_pred             CCCCCCEEEEEEEEEcCCCCcCCCCCEEEECCC
Confidence            999999999999999999999999999999975

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3e-17  Score=103.02  Aligned_cols=94  Identities=22%  Similarity=0.423  Sum_probs=76.7

Q ss_pred             CCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      |.+|..+++..  .+.+++.|.|++|..  .+|.+.+|.|+|+..+......     ...   ......++|.+|+|++.
T Consensus         4 P~~p~~~~~~~--~s~~si~v~W~~P~~--~~g~i~~Y~v~y~~~~~~~~~~-----~~~---~~~~~~~~i~~L~p~t~   71 (98)
T d1x5la1           4 PSQVVVIRQER--AGQTSVSLLWQEPEQ--PNGIILEYEIKYYEKDKEMQSY-----STL---KAVTTRATVSGLKPGTR   71 (98)
T ss_dssp             CCCCCCEECSC--BCSSCEEEEECCCSC--CCSCCCEEEEEEEESSSCCSSC-----EEE---EESSSEEEECSCCTTCE
T ss_pred             CCCCCceEEEe--ccCCEEEEEEECCCC--CCCCEEEEEEEeecccccceee-----EEe---cCCceEEEECCCCCCCE
Confidence            35788899988  899999999999876  4788999999999876543211     111   12247899999999999


Q ss_pred             EEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         236 YAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       236 Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      |.|+|+|.|..|.|++|+.+.++|.+
T Consensus        72 Y~~~V~a~n~~G~g~~S~~v~~~T~~   97 (98)
T d1x5la1          72 YVFQVRARTSAGCGRFSQAMEVETGK   97 (98)
T ss_dssp             EEECEEEEETTEECCCCCCEEEECCC
T ss_pred             EEEEEEEEcCCCCcCCCCCEEEEcCC
Confidence            99999999999999999999999964

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1e-17  Score=105.14  Aligned_cols=90  Identities=22%  Similarity=0.354  Sum_probs=72.1

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      ||.+|.++.+..  .+.+++.|.|++|.... ++.|.+|.|+|+..+...       +............+++.+|.+++
T Consensus         1 PP~~P~~~~v~~--~~~~sv~l~W~pP~~~~-~~~i~~Y~V~~~~~~~~~-------~~~~~~~~~~~~~~~v~~L~~~~   70 (98)
T d1x5ya1           1 PTSAPQHLTVED--VTDTTTTLKWRPPDRIG-AGGIDGYLVEYCLEGSEE-------WVPANKEPVERCGFTVKDLPTGA   70 (98)
T ss_dssp             CCCCCEEEEEEE--ECSSEEEEEEECCSCCC-SSCCCEEEEEEEETTCCC-------CEESSSSCBSSSEEEEECCCTTC
T ss_pred             CCCCCcCcEEEE--ccCCEEEEEEECCCcCC-CCCceEEEEEEEecCcce-------eEEeeeecCceeEEEECCCcCCe
Confidence            567899999988  89999999999987632 457999999999887643       22222233445789999999999


Q ss_pred             eEEEEEEEecCCCcCCCCcc
Q psy6638         235 KYAIVVRGYNSVGKGPFSEP  254 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~  254 (273)
                      .|.|+|+|.|..|.|++|..
T Consensus        71 ~Y~frV~A~n~~G~s~~s~~   90 (98)
T d1x5ya1          71 RILFRVVGVNIAGRSEPATL   90 (98)
T ss_dssp             CEEEEEEEEETTEECCCCCC
T ss_pred             EEEEEEEEECCCcCCCCcCC
Confidence            99999999999999987753

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=5e-17  Score=100.91  Aligned_cols=93  Identities=23%  Similarity=0.336  Sum_probs=76.0

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      +|+..|.++++..  .++++|.|+|+++.... ++.+++|.|+++..+..        .....    ....++|.+|+|+
T Consensus         1 a~p~~p~~L~~~~--~~~~si~vsW~~p~~~~-~~~~i~Y~i~~~~~~~~--------~~~~~----~~t~~~i~~L~p~   65 (94)
T d1x5aa1           1 AESLSGLSLKLVK--KEPRQLELTWAGSRPRN-PGGNLSYELHVLNQDEE--------WHQMV----LEPRVLLTKLQPD   65 (94)
T ss_dssp             CCCCCSCCCCEEE--EETTEEEEECCCCCSSC-CSSCCEEEEEEECSSCE--------EEEEE----SSSEEEEESCCSS
T ss_pred             CcCCCCCceEEEE--cCCCEEEEEEecccCCC-CCcEEEEEEEEecCCce--------EEEee----ccCEEEECCCCCC
Confidence            3556788999988  89999999999987554 56677999999876542        11111    2468999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      +.|.|+|+|+|..|.|++|+.+.++|.+
T Consensus        66 t~Y~~rV~A~n~~G~g~~S~~~~~~T~P   93 (94)
T d1x5aa1          66 TTYIVRVRTLTPLGPGPFSPDHEFRTSP   93 (94)
T ss_dssp             CEEEEEEEEECSSSCCCCCCCEEEECCC
T ss_pred             CEEEEEEEEEcCCcCcCCCCCEEEEeCC
Confidence            9999999999999999999999999963

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-16  Score=101.79  Aligned_cols=98  Identities=26%  Similarity=0.339  Sum_probs=80.3

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      +|.+|.++.+..  .+.+++.|+|.+|... .++.+.+|.|+|+..+....       ............++|.+|.|++
T Consensus        10 ~P~~P~~l~~~~--~~~~sv~lsW~~P~~~-~~~~i~~Y~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~p~t   79 (107)
T d1x5fa1          10 LPSAPRDVVASL--VSTRFIKLTWRTPASD-PHGDNLTYSVFYTKEGIARE-------RVENTSHPGEMQVTIQNLMPAT   79 (107)
T ss_dssp             CCCCCEEEEEEE--ECSSCEEEEEECCSSC-SSCCSSEEEEEEEETTCCCC-------EEEECSSTTCSEEEECSCCTTC
T ss_pred             CCcCCCccEEEE--ecCCEEEEEEECCccC-CCCceEEEEEEEEeCCCCce-------EEEEEeCCCccEEEecCCCCCC
Confidence            346889999988  8999999999998654 37789999999998765431       2233344456899999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      .|.|+|+|+|..|.|++|..+.+.|.++
T Consensus        80 ~Y~~rV~A~n~~G~g~~S~~i~v~T~~e  107 (107)
T d1x5fa1          80 VYIFRVMAQNKHGSGESSAPLRVETQPE  107 (107)
T ss_dssp             EEEEEEEEECSSCEEEECCCEEEECCCC
T ss_pred             EEEEEEEEEeCCCCcCCCCCEEEECCCC
Confidence            9999999999999999999999998763

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2e-17  Score=105.00  Aligned_cols=93  Identities=25%  Similarity=0.433  Sum_probs=76.7

Q ss_pred             CCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      |.+|.++.+..  .+.+++.|+|++|..  .++.+.+|.|+|+..+....       .....   ...+++|.+|.|++.
T Consensus        11 P~~P~~l~v~~--~s~~si~l~W~~P~~--~~g~i~~Y~v~~~~~~~~~~-------~~~~~---~~~~~~i~~L~p~t~   76 (103)
T d1x5ga1          11 PGPAPNLRAYA--ASPTSITVTWETPVS--GNGEIQNYKLYYMEKGTDKE-------QDVDV---SSHSYTINGLKKYTE   76 (103)
T ss_dssp             CCCCSSCEEEE--EETTEEEEECCCCSC--CSSCCSEEEEEEEETTCCCC-------CCEEE---CSSEEEECSCCTTCE
T ss_pred             cccCCCcEEEE--ccCCEEEEEEECCcC--CCccEEEEEEEEEeCCCcee-------EEEec---cccEEecCCCCCCCE
Confidence            35777899888  899999999999876  47889999999998765431       11111   246899999999999


Q ss_pred             EEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         236 YAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       236 Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      |.|+|+|+|..|.|++|+.+.++|.++
T Consensus        77 Y~~~V~A~n~~G~g~~S~~v~v~T~eD  103 (103)
T d1x5ga1          77 YSFRVVAYNKHGPGVSTPDVAVRTLSD  103 (103)
T ss_dssp             EEEEEEEECSSCCCCBCCCCCEECCCS
T ss_pred             EEEEEEEEcCCcCcCCCCCEEEEcCCC
Confidence            999999999999999999999999764

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=1.1e-16  Score=99.99  Aligned_cols=91  Identities=16%  Similarity=0.344  Sum_probs=71.9

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .|..+|.++.+..  .+.+++.|.|++|.... ++.|.+|.|+|+..+...      .+............+.|.+|+|+
T Consensus         5 ~P~~~P~~~~v~~--~s~tsv~l~W~~P~~~~-~~~i~gY~i~y~~~~~~~------~~~~~~~~~~~~~~~~i~~L~p~   75 (95)
T d2ibga1           5 DPMPVPELLEIEE--YSETAVVLHWSLASDAD-EHLITGYYAYYRPSSSAG------EYFKATIEGAHARSFKIAPLETA   75 (95)
T ss_dssp             CCCCCCEECCCBC--CSSSCEEEEEECCTTCC-GGGCCEEEEEEEETTCCS------CCEEEEEECTTCCEEEECSCCTT
T ss_pred             CCCCCCcCeEEEE--eCCCEEEEEEEeeeecc-CCcccccceeEeeeeecc------eeeeeeccCCceeEEEEeeccCC
Confidence            4555788899888  89999999999876543 667899999999875432      12223333455689999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCc
Q psy6638         234 TKYAIVVRGYNSVGKGPFSE  253 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~  253 (273)
                      +.|.|+|+|+|..|.|++|.
T Consensus        76 t~Y~~~V~A~n~~G~s~~Ss   95 (95)
T d2ibga1          76 TMYEFKLQSFSAASASEFSA   95 (95)
T ss_dssp             CEEEEEEEEECSSCBCCCCC
T ss_pred             eEEEEEEEEEeCCccCCCCC
Confidence            99999999999999999873

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.1e-17  Score=116.62  Aligned_cols=186  Identities=18%  Similarity=0.125  Sum_probs=80.3

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      .|++|.++.+...+.+++.|+|.+|...++.+.+|.|+|+.........        .........+.+...|.+++.+.
T Consensus         2 ~Ps~P~~~~~~~~s~~si~vsW~pP~~~ng~i~~Y~V~~~~~~~~~~~~--------~~~~~~~~~~~~~~~y~~~v~~~   73 (196)
T d2dtge2           2 NPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELF--------ELDYCLKGLKLPSRTWSPPFESE   73 (196)
T ss_dssp             CCCCCEEEEEEECSSSCEEEEEECCCCSSSSCSEEECCEEEECCCCSCT--------TCSSSCSCCCCCC----------
T ss_pred             cCcCCcCCEEEeccCCEEEEEEECCCCCCCcEEEEEEEEEcCCCCCcee--------EEeeEEeccccceeEEEEEEEEE
Confidence            6899999999999999999999998877778999999998755321100        11112234567788899999998


Q ss_pred             CCCCCCCCCcceEEEecCCCC------CCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccce
Q psy6638         135 NPLGMSETGAELQASTLEEAP------NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALS  208 (273)
Q Consensus       135 ~~~g~~~~s~~~~~~~~~~~p------~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~  208 (273)
                      +..+.+..............+      ...+..+.+..  .....+.+.|..+...  ......|.+.+.......    
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----  145 (196)
T d2dtge2          74 DSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRK--TFEDYLHNVVFVPRPS--RKRRSLGDVGNAGNNEEH----  145 (196)
T ss_dssp             --------------------------------------------------------------------------CC----
T ss_pred             cCCccccCcCCccceecCCCCccccccccCCcCcEEEe--ccCCceeecccCcCCC--ccceEEEEEEeecCCCcc----
Confidence            877755444333222221111      11222333333  3445566666665431  111222222222221111    


Q ss_pred             eeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCcCCC---CccEEEEcCC
Q psy6638         209 SYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGKGPF---SEPFIARTNE  261 (273)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~---s~~~~~~t~~  261 (273)
                           ..........+++|.+|.|++.|.|+|+|+|..|.+..   +..+.++|.+
T Consensus       146 -----~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~~~rT~P  196 (196)
T d2dtge2         146 -----RPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMP  196 (196)
T ss_dssp             -----SCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECCC
T ss_pred             -----EEEEeccceEEEEECCCCCCCEEEEEEEEEECCCCCCCccCcceEEeeCCC
Confidence                 01111223568999999999999999999999888754   5567777753

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.4e-17  Score=102.16  Aligned_cols=99  Identities=22%  Similarity=0.439  Sum_probs=79.5

Q ss_pred             EEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEE
Q psy6638         147 QASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR  226 (273)
Q Consensus       147 ~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (273)
                      .+.+....| .+|.++.+..  .+.+++.|+|++|.    ++.+.+|.|+|+..+....       ......  ...+++
T Consensus         3 ~v~T~~~vP-~~P~~~~~~~--~~~~si~l~W~~p~----~~~i~~Y~i~y~~~~~~~~-------~~~~~~--~~~~~~   66 (102)
T d1x5za1           3 QVITQTGVP-GQPLNFKAEP--ESETSILLSWTPPR----SDTIANYELVYKDGEHGEE-------QRITIE--PGTSYR   66 (102)
T ss_dssp             CCCCCSCCC-CCCEEEEEEC--SSSSEEEEEEECCS----CCCCCEEEECBEESSSCCC-------BCCEEC--SSSEEE
T ss_pred             EEECCCCCC-cCCCCeEEEE--ccCCEEEEEEECCC----CCCccceEEEEEeCCCCce-------EEEEcC--CcCEEE
Confidence            445666667 5788999988  89999999999985    4578999999998755331       111112  236899


Q ss_pred             cCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         227 IPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       227 i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      |.+|+|++.|.|+|+|+|..|.|++|+.+.++|.+
T Consensus        67 i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~T~e  101 (102)
T d1x5za1          67 LQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ  101 (102)
T ss_dssp             EECCCTTCEEEECEEEECSSCEEEECCCEEEECCC
T ss_pred             ECCCCCCCEEEEEEEEEcCCCEeCCCCCEEEEcCC
Confidence            99999999999999999999999999999999976

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.5e-16  Score=98.69  Aligned_cols=90  Identities=27%  Similarity=0.530  Sum_probs=73.5

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      ++|.++.+..  .+++++.|+|++|.     +.+.+|.|+|+..........     .   .......+.|.+|.|++.|
T Consensus         3 ~aP~n~~~~~--~s~~si~l~W~~p~-----~~~~~Y~i~y~~~~~~~~~~~-----~---~~~~~~~~~i~~L~p~t~Y   67 (92)
T d1qg3a1           3 GAPQNPNAKA--AGSRKIHFNWLPPS-----GKPMGYRVKYWIQGDSESEAH-----L---LDSKVPSVELTNLYPYCDY   67 (92)
T ss_dssp             CCCEEEEEEE--CSTTCEEEEEECCS-----SCCCEEEEEEEETTSCGGGCE-----E---EEESSSEEEECSCCTTCEE
T ss_pred             CcCCCCEEEE--ccCCEEEEEEEecC-----CCccceEEeeeeccccccEEE-----E---ecCCccEEEECCCCCCcEE
Confidence            4788999988  89999999999974     457899999998765432111     1   1223568999999999999


Q ss_pred             EEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         237 AIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      .|+|+|+|..|.|++|+++.++|++
T Consensus        68 ~~~V~A~n~~G~g~~S~~~~~~T~e   92 (92)
T d1qg3a1          68 EMKVCAYGAQGEGPYSSLVSCRTHQ   92 (92)
T ss_dssp             EEEEEEECSSCBCCCCCCEEEECCC
T ss_pred             EEEEEEEeCCcCcCCCCCEEEEcCC
Confidence            9999999999999999999999974

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.6e-16  Score=99.43  Aligned_cols=100  Identities=24%  Similarity=0.329  Sum_probs=80.0

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      |..+|.++.+..  .+.+++.|+|+++.....++.+.+|.|+|+..+......    +.... .......++|.+|++++
T Consensus         1 P~~~P~~~~~~~--~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~----~~~~~-~~~~~~~~~i~~L~p~t   73 (101)
T d1x4ya1           1 PVAGPYITFTDA--VNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSD----YKKDM-VEGDRYWHSISHLQPET   73 (101)
T ss_dssp             CCSCCEEEEEEC--SSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGG----CCCEE-EETTCCEEEECSCCTTC
T ss_pred             CCCCCcccEEEE--EcCCEEEEEEecCcccccccceEEEEEEeeeccceeeee----eeEEE-EcCCeeEEEEcCCCCCC
Confidence            456888999988  899999999998766656889999999999875543221    11111 22335689999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      .|.|+|+|+|..|.|++|+.+.++|..
T Consensus        74 ~Y~~~v~a~n~~G~s~~S~~~~~~T~~  100 (101)
T d1x4ya1          74 SYDIKMQCFNEGGESEFSNVMICETKA  100 (101)
T ss_dssp             EEEEEEEEECTTCCCCCCCCEEEECCC
T ss_pred             EEEEEEEEEcCCCCCCCCCcEEEEccC
Confidence            999999999999999999999999864

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.6e-16  Score=98.64  Aligned_cols=91  Identities=18%  Similarity=0.119  Sum_probs=73.6

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|..+.+..  .+.+++.|.|++|.+  .+++|.+|.|+|+..++...        ...........+++.+|.+++.|
T Consensus         2 ~~P~~~~~~~--~~~~sv~l~W~~p~~--~~~~I~~Y~i~~~~~~~~~~--------~~~~~~~~~~~~~i~~L~p~t~Y   69 (93)
T d2vkwa2           2 SAPKLEGQMG--EDGNSIKVNLIKQDD--GGSPIRHYLVRYRALSSEWK--------PEIRLPSGSDHVMLKSLDWNAEY   69 (93)
T ss_dssp             CCCEEEEEEC--TTSSCEEEEEECCCC--TTSCCCEEEEEEEETTSCCC--------CCEEECTTCCEEEECSCCTTCEE
T ss_pred             CCCccCEeEE--cCCCEEEEEeeCCCC--CcCceEEEEEEeeecCccee--------eeeeccCCceEEEEeccccceEE
Confidence            5788888888  899999999999976  36789999999998776431        11112334678999999999999


Q ss_pred             EEEEEEecCCCcCCCCccEEEEcC
Q psy6638         237 AIVVRGYNSVGKGPFSEPFIARTN  260 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~~~~t~  260 (273)
                      .|+|+|+|..|.|+++. +.|+|.
T Consensus        70 ~~~V~A~N~~G~s~ps~-~~~~T~   92 (93)
T d2vkwa2          70 EVYVVAENQQGKSKAAH-FVFRTA   92 (93)
T ss_dssp             EEEEEEEETTEECCCEE-EEEECC
T ss_pred             EEEEEEEcCCCCcCCEe-EEEEec
Confidence            99999999999999884 677774

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.3e-16  Score=99.78  Aligned_cols=90  Identities=23%  Similarity=0.382  Sum_probs=73.3

Q ss_pred             eEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEE
Q psy6638         161 EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVV  240 (273)
Q Consensus       161 ~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v  240 (273)
                      .+.+..  .+.++|.|.|++|..  .+|.+.+|.|+++..+.......     .   .......+++.+|.|++.|.|+|
T Consensus         6 ~l~~~~--~t~~si~l~W~~p~~--~~g~i~~Y~v~~~~~~~~~~~~~-----~---~~~~~~~~~i~~L~p~t~Y~~~V   73 (95)
T d2djsa1           6 IMHQVS--ATMRSITLSWPQPEQ--PNGIILDYEIRYYEKEHNEFNSS-----M---ARSQTNTARIDGLRPGMVYVVQV   73 (95)
T ss_dssp             CCEEEE--ECSSEEEEECCCCSC--CSSCEEEEEEEEEETTSCSTTCE-----E---EEESSSEEEEESCCTTCEEEEEE
T ss_pred             ccEEEe--ecCCEEEEEEEECCC--CCcceEEeeeeeeeeccCcceeE-----e---ecCCccEEEEeecCCccEEEEEE
Confidence            577767  799999999999876  57899999999998765432211     1   11224689999999999999999


Q ss_pred             EEecCCCcCCCCccEEEEcCCC
Q psy6638         241 RGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       241 ~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      +|.|..|.|++|+.+.++|.++
T Consensus        74 ~A~n~~G~g~~S~~~~~~T~~d   95 (95)
T d2djsa1          74 RARTVAGYGKFSGKMCFQTLTD   95 (95)
T ss_dssp             EEEESSCEEEECCCEEEECCCS
T ss_pred             EEEcCCCCCCCCCCEEEEeCCC
Confidence            9999999999999999999764

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2e-16  Score=98.76  Aligned_cols=84  Identities=25%  Similarity=0.380  Sum_probs=66.3

Q ss_pred             cCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCc
Q psy6638         169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK  248 (273)
Q Consensus       169 ~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~  248 (273)
                      ...++|.|+|++|..+. +..|.+|.|+++..+...+       ....  ......++|.+|.+++.|.|+|+|.|..|.
T Consensus        14 ~~~~sv~l~W~~P~~~g-g~~i~~Y~v~~~~~~~~~~-------~~~~--~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~   83 (97)
T d2crza1          14 PKAKEIQLRWGPPLVDG-GSPISCYSVEMSPIEKDEP-------REVY--QGSEVECTVSSLLPGKTYSFRLRAANKMGF   83 (97)
T ss_dssp             CCSSEEEEECCCCSCCT-TSCCCEEEEEEECTTSCCC-------EEEE--EESCSEEEEESCCTTCEEEECCEEECSSCB
T ss_pred             eeCCEEEEEEeCCCcCC-CCceeEEEEEEEcCcCCce-------eEee--cCCceEEEEcCCCCCEEEEEEEEEecCCeE
Confidence            46789999999886532 3378999999988765432       1221  122468999999999999999999999999


Q ss_pred             CCCCccEEEEcCCC
Q psy6638         249 GPFSEPFIARTNEG  262 (273)
Q Consensus       249 ~~~s~~~~~~t~~~  262 (273)
                      |++|+...+.|.++
T Consensus        84 s~~S~~~~~~T~pG   97 (97)
T d2crza1          84 GPFSEKCDITTAPG   97 (97)
T ss_dssp             CCCCCCEEEECCCS
T ss_pred             cCCcCCCeEEeCcC
Confidence            99999999998764

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.8e-17  Score=104.14  Aligned_cols=99  Identities=20%  Similarity=0.188  Sum_probs=76.6

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|.++.+..  .+.++++|+|+++.+  .++.+.+|.|+|+......      .+..... ......++|.+|+|++.|
T Consensus        17 ~pP~~~~v~~--~~~~sv~l~W~p~~~--~~~~i~~Y~v~~~~~~~~~------~~~~~~~-~~~~~~~~v~~L~p~t~Y   85 (117)
T d1uema_          17 GPPSKPQVTD--VTKNSVTLSWQPGTP--GTLPASAYIIEAFSQSVSN------SWQTVAN-HVKTTLYTVRGLRPNTIY   85 (117)
T ss_dssp             BCCCCCEEEE--ECSSCEEEECCCCBC--SSSCCCEEEEEEEETTTEE------EEEEEEE-EECSSEEEECSCCTTCEE
T ss_pred             cCCCCCEEEE--ccCCEEEEEEECCCc--CCCCeEEEEEEEeccCCce------eeEEecc-ccccccceECCCCCCCEE
Confidence            5777888877  789999999998765  3567999999998765432      1222221 122468999999999999


Q ss_pred             EEEEEEecCCCcCCCCccE-EEEcCCCCCcc
Q psy6638         237 AIVVRGYNSVGKGPFSEPF-IARTNEGDFLF  266 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~-~~~t~~~~P~~  266 (273)
                      .|+|+|+|..|.|++|+.. .++|.+.+|+.
T Consensus        86 ~frV~A~N~~G~s~~S~~s~~v~t~~~~Pss  116 (117)
T d1uema_          86 LFMVRAINPQGLSDPSPMSDPVRTQDSGPSS  116 (117)
T ss_dssp             EEEEEEEETTEEEEECCCCCCEECCCSSCCC
T ss_pred             EEEEEEEeCCcCCCCcCCCcCEEeCCCCcCC
Confidence            9999999999999988765 47898888863

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-16  Score=101.66  Aligned_cols=101  Identities=18%  Similarity=0.254  Sum_probs=74.0

Q ss_pred             EEecCCCCCCCCee-EEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEE
Q psy6638         148 ASTLEEAPNGAPRE-VTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR  226 (273)
Q Consensus       148 ~~~~~~~p~~~p~~-~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (273)
                      ++|.++.|. +|.. +.+..  .+.+++.|+|++|.... +..+..|.++++..+....      +..  ........+.
T Consensus         4 ~~T~~~~P~-~P~~~~~~~~--~~~~sv~l~W~~P~~~~-g~~~~~y~v~~~~~~~~~~------~~~--~~~~~~~~~~   71 (107)
T d2crma1           4 FTTCPDKPG-IPVKPSVKGK--IHSHSFKITWDPPKDNG-GATINKYVVEMAEGSNGNK------WEM--IYSGATREHL   71 (107)
T ss_dssp             CCSCCCCCC-CCCCCEEEEE--EETTEEEEECCCCTTCC-SSCCCEEEEEEEESSSSCC------CEE--EECSSCSEEE
T ss_pred             EECCCCCCc-CCCCCEEEee--ecCCEEEEEEEECccCC-cceEEEEEEEEEeecCCCc------EEE--eecCCccEEE
Confidence            455565554 4444 33334  57889999999887632 3478899999987765431      111  1223357899


Q ss_pred             cCCCCccceEEEEEEEecCCCcCCCCccEEEEcC
Q psy6638         227 IPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTN  260 (273)
Q Consensus       227 i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~  260 (273)
                      +.+|++++.|.|+|+|.|..|.|++|+.+.++|+
T Consensus        72 i~~L~p~t~Y~~rV~A~n~~G~s~~S~~v~v~Tp  105 (107)
T d2crma1          72 CDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP  105 (107)
T ss_dssp             ECSCCTTSCEEEEEEEEETTEECCCCCCCCCCCC
T ss_pred             EeccCCCCEEEEEEEEECCCcCcCCCCcEEEECC
Confidence            9999999999999999999999999999888874

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.2e-17  Score=102.25  Aligned_cols=101  Identities=19%  Similarity=0.276  Sum_probs=79.3

Q ss_pred             EEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEc
Q psy6638         148 ASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRI  227 (273)
Q Consensus       148 ~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  227 (273)
                      ++|....| .+|..+++..  .+.+++.|+|.+|..  .++.+.+|.|+++........        ..........+++
T Consensus         4 f~T~~~~P-~~P~~~~~~~--~~~~sv~l~W~pp~~--~~~~i~~Y~i~~~~~~~~~~~--------~~~~~~~~~~~~~   70 (105)
T d1x3da1           4 FTTLSCEP-DIPNPPRIAN--RTKNSLTLQWKAPSD--NGSKIQNFVLEWDEGKGNGEF--------CQCYMGSQKQFKI   70 (105)
T ss_dssp             CCCCCSCC-CCCCCCEEEE--EETTEEEEECCCCCC--CSSCEEEEEEEECTTTSSSCC--------EEEEEESCSEEEE
T ss_pred             EECCCCCC-cCCCCCEEEE--ccCCEEEEEEECCCC--CcCccEEEEEEEecCCCccee--------EEEecCCccEEEe
Confidence            45555444 6888899888  899999999999976  367899999999866543311        1112223578999


Q ss_pred             CCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         228 PGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       228 ~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      .+|.|++.|.|+|+|+|..|.|++|+.+.++|..
T Consensus        71 ~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~T~g  104 (105)
T d1x3da1          71 TKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSG  104 (105)
T ss_dssp             ESCCTTCEEEEECCEEESSCBCCCCCCEEEECSC
T ss_pred             cCCcCCcEEEEEEEEECCCeEcCCCCcEEEECCC
Confidence            9999999999999999999999999999999853

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1e-16  Score=102.25  Aligned_cols=98  Identities=27%  Similarity=0.418  Sum_probs=76.1

Q ss_pred             EEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEE
Q psy6638         147 QASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELR  226 (273)
Q Consensus       147 ~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (273)
                      .++|.+++|. +|.++.+..  .+.+++.|+|++|..  .+|.|.+|.|+|+..+.....       ..........+++
T Consensus         3 ~v~T~e~vP~-~p~~l~~~~--~~~~sv~l~W~~P~~--~ng~i~~Y~i~~~~~~~~~~~-------~~~~~~~~~~~~~   70 (106)
T d1wfna1           3 LVRTHEDVPG-PVGHLSFSE--ILDTSLKVSWQEPGE--KNGILTGYRISWEEYNRTNTR-------VTHYLPNVTLEYR   70 (106)
T ss_dssp             SCCSSCCSCC-CCSCCEEES--CCSSEEEEECCCCTT--CCSCCCEEEEEEEESSCGGGC-------CCEEECSSCCEEE
T ss_pred             EEEcCCCCCc-CCCCcEEEE--ecCCEEEEEEECCCC--CCCcEEeEEEEEEECCCCcce-------EEEecCCCeeEEE
Confidence            3566666674 788899888  899999999998876  478899999999887643211       1111233357899


Q ss_pred             cCCCCccceEEEEEEEecCCCcCCCCccEE
Q psy6638         227 IPGLTPYTKYAIVVRGYNSVGKGPFSEPFI  256 (273)
Q Consensus       227 i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~  256 (273)
                      |.+|.|++.|.|+|+|+|..|.|++|....
T Consensus        71 i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~  100 (106)
T d1wfna1          71 VTGLTALTTYTIEVAAMTSKGQGQVSASTI  100 (106)
T ss_dssp             EESCCTTCEEEEEEEEECSSCEEEEEEEEE
T ss_pred             EccCCCCCEEEEEEEEECCCCCcCCcCCEE
Confidence            999999999999999999999998886543

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.8e-16  Score=100.38  Aligned_cols=103  Identities=22%  Similarity=0.317  Sum_probs=74.0

Q ss_pred             eEEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEE
Q psy6638         146 LQASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGEL  225 (273)
Q Consensus       146 ~~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (273)
                      +.+.+.+.+|. .|. +.+..  .+.+++.|.|.+|.+  .++.|.+|.|+|+..++.+       .............+
T Consensus         5 l~v~~~P~~P~-~p~-~~~~~--~~~~sv~l~W~~P~~--~~~~I~~Y~v~~~~~~~~~-------~~~~~~~~~~~~~~   71 (108)
T d1wf5a1           5 LRVRQLPHAPE-HPV-ATLST--VERRAINLTWTKPFD--GNSPLIRYILEMSENNAPW-------TVLLASVDPKATSV   71 (108)
T ss_dssp             SSCCCCCCCCS-SCE-EEECS--SSTTEEEEECCCCCC--CSSCEEEEEEEEECTTCCC-------EEEESSCCTTCCEE
T ss_pred             cEEecCCCCCC-CCE-EEEEe--ccCCEEEEEEECCCC--CCCccEEEEEEEEeccCCc-------eEEeeeecCCccEE
Confidence            33444444342 332 45555  688899999999865  3678999999999876542       11122234446789


Q ss_pred             EcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         226 RIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       226 ~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      +|.+|.+++.|.|+|+|.|..|.|++|+.....|.+
T Consensus        72 ~i~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~t~P  107 (108)
T d1wf5a1          72 TVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLP  107 (108)
T ss_dssp             EEESCCTTCEEEEEEEEEESSCEEEECCCCSCEECC
T ss_pred             EECCCCCCCEEEEEEEEEcCCcCCCCcCCcCCEECC
Confidence            999999999999999999999999998877666543

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.6e-16  Score=98.76  Aligned_cols=90  Identities=23%  Similarity=0.252  Sum_probs=71.1

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|..+.+..  .+.+++.|.|++|..  .++.+.+|.|+|+..+....        ...  ......++|.+|.+++.|.
T Consensus         3 ~P~~~~v~~--~s~~si~l~W~~p~~--~~~~i~~Y~v~~~~~~~~~~--------~~~--~~~~~~~~i~~L~p~t~Y~   68 (93)
T d1x4xa1           3 QCKPPQVTC--RSATCAQVNWEVPLS--NGTDVTEYRLEWGGVEGSMQ--------ICY--CGPGLSYEIKGLSPATTYY   68 (93)
T ss_dssp             CCCCCCCEE--EETTEEEEECCCCSC--SSSCCCEEEEEEESSTTSCC--------EEE--EESCSEEEEESCCSSCEEE
T ss_pred             CCCCCEEEE--eCCCeEEEEEEeccc--CCCeeEEEEEEEccCCCcce--------Eee--cCCccEEEEcccceeeEEE
Confidence            344455555  688999999999876  36789999999987655421        111  1235789999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEcCC
Q psy6638         238 IVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      |+|+|+|..|.|++|+.+.++|++
T Consensus        69 ~~V~A~n~~G~s~~S~~~~~~Tpp   92 (93)
T d1x4xa1          69 CRVQALSVVGAGPFSEVVACVTPP   92 (93)
T ss_dssp             EEEEEECSSCCCCBCCCEEEECCC
T ss_pred             EEEEEEECCcCcCCCCcEEEEeCC
Confidence            999999999999999999999965

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.4e-16  Score=98.25  Aligned_cols=97  Identities=19%  Similarity=0.247  Sum_probs=71.1

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|....+.   ...+++.|.|++|.... +.+|.+|.|+|+..+...+...    ............++|.+|.+++.|
T Consensus         4 ~~P~~~~~~---~~~~sv~l~W~~P~~~g-g~~I~~Y~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~L~p~t~Y   75 (101)
T d2haza1           4 SSPSIDQVE---PYSSTAQVQFDEPEATG-GVPILKYKAEWRAVGEEVWHSK----WYDAKEASMEGIVTIVGLKPETTY   75 (101)
T ss_dssp             CCCEEEEEE---ECSSCEEEEEECCSCCT-TSCCCEEEEEEEETTCCCCEEE----EEEHHHHHHHSEEEECSCCTTCEE
T ss_pred             cCCccCEEE---eeCCEEEEEEeCCCcCc-cccEEEEEEEEeecCCcceeee----eeeeecccceeEEEecCCCCCeEE
Confidence            466555543   46678999999986532 3369999999998766432111    111111223467999999999999


Q ss_pred             EEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         237 AIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      .|+|+|+|..|.|++|+...+.|.+
T Consensus        76 ~frV~A~N~~G~g~~S~~~~~~T~P  100 (101)
T d2haza1          76 AVRLAALNGKGLGEISAASEFKTQP  100 (101)
T ss_dssp             EEEEEEEETTEECCCCCCEEEECCC
T ss_pred             EEEEEEEeCCcCcCCCCceeEEeCC
Confidence            9999999999999999999999875

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.7e-16  Score=97.83  Aligned_cols=94  Identities=20%  Similarity=0.174  Sum_probs=71.0

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++.+..  .+.+++.|.|++|.... +..+..|.++++..+.....       ... .......++|.+|++++.|.
T Consensus         3 ~P~~~~v~~--~~~~si~l~W~~p~~~~-~~~~~~y~~~~~~~~~~~~~-------~~~-~~~~~~~~~v~~L~p~t~Y~   71 (96)
T d1x5xa1           3 MPASPVLTK--AGITWLSLQWSKPSGTP-SDEGISYILEMEEETSGYGF-------KPK-YDGEDLAYTVKNLRRSTKYK   71 (96)
T ss_dssp             CCCCCEEEE--ECSSEEEEECCCCSSCC-SSSSCEEEEEECCSSSSCCC-------EEE-EEESCSEEEEESCCSSCEEE
T ss_pred             cCCCCEEEE--ecCCEEEEEEEeecccC-cceEeeeEEEeeeccceeee-------EEe-ecCCCCEEEECCCCCCCEEE
Confidence            555667766  78999999999987632 34577788887765543321       111 11224689999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         238 IVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      |+|+|+|..|.|++|+.+.++|.++
T Consensus        72 ~rV~A~n~~G~s~~S~~~~~~T~pd   96 (96)
T d1x5xa1          72 FKVIAYNSEGKSNPSEVVEFTTCPD   96 (96)
T ss_dssp             EEEEEECSSCEEEECCCEEEECCCC
T ss_pred             EEEEEEcCCcEeCCCCCEEEEeCcC
Confidence            9999999999999999999999764

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.4e-17  Score=104.91  Aligned_cols=109  Identities=19%  Similarity=0.244  Sum_probs=79.1

Q ss_pred             EEEecCCCCCCCCeeEEecCCccCCceEEEEEeCCCCCCc----cceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcc
Q psy6638         147 QASTLEEAPNGAPREVTSDPGVVDPTELLIKWKAPPRESW----NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYE  222 (273)
Q Consensus       147 ~~~~~~~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~----~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (273)
                      .|+|....|+.+|.++.+... .++.++.|+|++|.....    ++.+.+|.+++    ...      ............
T Consensus         2 ~~~T~~~~pp~pP~~v~v~~~-~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~----~~~------~~~~~~~~~~~~   70 (117)
T d2cspa1           2 EFSTLPAGPPAPPQDVTVQAG-VTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA----KGQ------RVAEVIFPTADS   70 (117)
T ss_dssp             CCCCCCCCCCCCCEEEEECCC-SSTTEEEEEEECCCCCTTSCSSSSCEEEEEEES----SSS------EEEEECCTTCSE
T ss_pred             EEEeCCCCCCCCCCccEEEEe-cCCCEEEEEEcCCCccccCcccccceEEEEEEe----ecc------cceeeeeeccce
Confidence            456777788889999988541 466799999999865322    23455555543    111      122233334445


Q ss_pred             cEEEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCCCCCcc
Q psy6638         223 GELRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNEGDFLF  266 (273)
Q Consensus       223 ~~~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~  266 (273)
                      ..+.|.+|++++.|.|+|+|+|..|.|++|..+.++|...+|+.
T Consensus        71 ~~~~i~~L~~~t~Y~v~V~A~n~~G~s~~S~~v~i~t~~~vP~~  114 (117)
T d2cspa1          71 TAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPT  114 (117)
T ss_dssp             EEEESHHHHHHTCSCBEEEEEESSCCCCCCSCBCCCHHHHSCCC
T ss_pred             eeeeccCCCCCcEEEEEEEEEcCCCcCCCCCCEEeeCCCCCCcc
Confidence            68899999999999999999999999999999999998777764

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.3e-15  Score=93.38  Aligned_cols=91  Identities=25%  Similarity=0.441  Sum_probs=77.7

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeC
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAEN  135 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~  135 (273)
                      |++|..+.+.....+++.|.|.++.+++.++.+|.|+|+..+..|..   ........+.+.+.+|.+++.|.|+|+|.|
T Consensus         1 P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~I~~Y~i~~~~~~~~~~~---~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N   77 (93)
T d2vkwa2           1 PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKP---EIRLPSGSDHVMLKSLDWNAEYEVYVVAEN   77 (93)
T ss_dssp             CCCCEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEEEETTSCCCC---CEEECTTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCCCccCEeEEcCCCEEEEEeeCCCCCcCceEEEEEEeeecCcceee---eeeccCCceEEEEeccccceEEEEEEEEEc
Confidence            78999998888899999999999988888999999999998777652   334556778899999999999999999999


Q ss_pred             CCCCCCCCcceEEEe
Q psy6638         136 PLGMSETGAELQAST  150 (273)
Q Consensus       136 ~~g~~~~s~~~~~~~  150 (273)
                      ..|.|.++. +.++|
T Consensus        78 ~~G~s~ps~-~~~~T   91 (93)
T d2vkwa2          78 QQGKSKAAH-FVFRT   91 (93)
T ss_dssp             TTEECCCEE-EEEEC
T ss_pred             CCCCcCCEe-EEEEe
Confidence            999988764 55554

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.9e-15  Score=92.95  Aligned_cols=91  Identities=26%  Similarity=0.375  Sum_probs=77.4

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeC
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAEN  135 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~  135 (273)
                      |++|.++.+...+.+++.|+|++|...++++.+|.|+++..+..+.     .......+.+.+.+|.+++.|.|+|+|.|
T Consensus         1 P~~P~~~~v~~~s~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~-----~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   75 (93)
T d1x4xa1           1 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQ-----ICYCGPGLSYEIKGLSPATTYYCRVQALS   75 (93)
T ss_dssp             CCCCCCCCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTTSCC-----EEEEESCSEEEEESCCSSCEEEEEEEEEC
T ss_pred             CcCCCCCEEEEeCCCeEEEEEEecccCCCeeEEEEEEEccCCCcce-----EeecCCccEEEEcccceeeEEEEEEEEEE
Confidence            6778888888889999999999988777889999999998765544     23344677899999999999999999999


Q ss_pred             CCCCCCCCcceEEEec
Q psy6638         136 PLGMSETGAELQASTL  151 (273)
Q Consensus       136 ~~g~~~~s~~~~~~~~  151 (273)
                      ..|.|.++..+.++|.
T Consensus        76 ~~G~s~~S~~~~~~Tp   91 (93)
T d1x4xa1          76 VVGAGPFSEVVACVTP   91 (93)
T ss_dssp             SSCCCCBCCCEEEECC
T ss_pred             CCcCcCCCCcEEEEeC
Confidence            9999999998888773

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.2e-16  Score=96.94  Aligned_cols=97  Identities=18%  Similarity=0.134  Sum_probs=75.7

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCC--ccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRES--WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP  232 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~--~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  232 (273)
                      |..||.++.+..  .+.+++.|+|++|....  ..+.+..|.|+|+..+.....        ..........++|.+|.|
T Consensus         1 P~~pP~~v~~~~--~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~L~p   70 (100)
T d1x5ja1           1 PMMPPVGVQASI--LSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK--------YKNANATTLSYLVTGLKP   70 (100)
T ss_dssp             CCCCCEEEEEEE--EETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCC--------CEECCBCSSEEEEESCCT
T ss_pred             CCCCCcCeEEEE--ecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcce--------eEecCCCccEEEECCCCC
Confidence            456889999988  99999999999875422  123567899998876654321        111223356899999999


Q ss_pred             cceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         233 YTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       233 ~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      ++.|.|+|+|+|..|.|++|+.+.++|.+
T Consensus        71 ~t~Y~~~V~a~n~~g~s~~S~~~~~~T~e   99 (100)
T d1x5ja1          71 NTLYEFSVMVTKGRRSSTWSMTAHGTTFE   99 (100)
T ss_dssp             TCEECCEEEEECSSCBCCCCCCCCEECCC
T ss_pred             CCEEEEEEEEEeCCcCcCCCCeEEEEecc
Confidence            99999999999999999999999999875

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.8e-16  Score=98.31  Aligned_cols=96  Identities=20%  Similarity=0.158  Sum_probs=75.6

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      ++.||.++.+..   +.++|.|.|++|..  .++.+.+|.|+|+..++.+.       ............++|.+|.+++
T Consensus         7 ~~sPP~~~~~~~---t~~si~l~W~pp~~--~~~~i~~Y~v~~~~~~~~~~-------~~~~~~~~~~~~~~i~~L~p~t   74 (108)
T d1v5ja_           7 GLSPPRGLVAVR---TPRGVLLHWDPPEL--VPKRLDGYVLEGRQGSQGWE-------VLDPAVAGTETELLVPGLIKDV   74 (108)
T ss_dssp             CCCCCEEEEEEE---CSSSEEEEEECCSC--CSSCCCBEEEEEEETTCCCE-------EEEEEECSSCCEEECCCCCTTS
T ss_pred             CCCcCCCeEEEE---cCCEEEEEEEeccc--CCCceeEEEEEeeeeeeeee-------eccccccceeeeEEEEeccCCc
Confidence            345888887744   77899999999876  36789999999998765431       1112233446789999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      .|.|+|+|+|..|.|++|+.+.++|...
T Consensus        75 ~Y~~rV~A~n~~g~s~~S~~~~~~T~~~  102 (108)
T d1v5ja_          75 LYEFRLVAFAGSFVSDPSNTANVSTSGL  102 (108)
T ss_dssp             CEECCBEEEETTEEEEECSCCCCCCSSC
T ss_pred             EEEEEEEEEeCCCEeCCcCceEEECCCC
Confidence            9999999999999999999988888653

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.8e-15  Score=94.26  Aligned_cols=94  Identities=28%  Similarity=0.399  Sum_probs=78.3

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      ..|.+|.++.+...+.+++.|+|.+|...++++.+|.|+|+..+.....   .  .......+.+.+|.|++.|.|+|+|
T Consensus         9 ~vP~~P~~l~v~~~s~~si~l~W~~P~~~~g~i~~Y~v~~~~~~~~~~~---~--~~~~~~~~~i~~L~p~t~Y~~~V~A   83 (103)
T d1x5ga1           9 QLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQ---D--VDVSSHSYTINGLKKYTEYSFRVVA   83 (103)
T ss_dssp             SCCCCCSSCEEEEEETTEEEEECCCCSCCSSCCSEEEEEEEETTCCCCC---C--EEECSSEEEECSCCTTCEEEEEEEE
T ss_pred             CCcccCCCcEEEEccCCEEEEEEECCcCCCccEEEEEEEEEeCCCceeE---E--EeccccEEecCCCCCCCEEEEEEEE
Confidence            4688999999999999999999999887778899999999987543221   1  2235578999999999999999999


Q ss_pred             eCCCCCCCCCcceEEEecC
Q psy6638         134 ENPLGMSETGAELQASTLE  152 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~~  152 (273)
                      .|..|.|.++..+.++|.+
T Consensus        84 ~n~~G~g~~S~~v~v~T~e  102 (103)
T d1x5ga1          84 YNKHGPGVSTPDVAVRTLS  102 (103)
T ss_dssp             ECSSCCCCBCCCCCEECCC
T ss_pred             EcCCcCcCCCCCEEEEcCC
Confidence            9999999988888887754

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.6e-15  Score=96.65  Aligned_cols=92  Identities=21%  Similarity=0.270  Sum_probs=69.5

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .||.+|.++.+..  .+.+++.|.|.++.+  .++.|.+|.|+|+..+....    +.. ...........+++.+|.++
T Consensus         9 ~pP~~P~~~~v~~--~~~~sv~l~W~p~~~--~g~~I~~Y~v~~~~~~~~~~----~~~-~~~~~~~~~~~~~v~~L~p~   79 (108)
T d1x4za1           9 SPPEAPDRPTIST--ASETSVYVTWIPRGN--GGFPIQSFRVEYKKLKKVGD----WIL-ATSAIPPSRLSVEITGLEKG   79 (108)
T ss_dssp             CCCCCCCCCEEEE--CCSSEEEEECCCCCC--TTSCCCEEEEEEEESSSCCC----CEE-EEEEECTTCCEEEEESCCTT
T ss_pred             CCCccCCCCEEEE--ccCCEEEEEEECCCC--CCCccEEEEEEEEecCCCCc----eEE-EEEeecCCccEEEECCCCCC
Confidence            4566777788777  889999999987754  35679999999998654321    011 11223344678999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCcc
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEP  254 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~  254 (273)
                      +.|.|+|+|+|..|.|++|++
T Consensus        80 t~Y~frV~A~N~~G~s~~S~p  100 (108)
T d1x4za1          80 ISYKFRVRALNMLGESEPSAP  100 (108)
T ss_dssp             CEEEEEEEEEETTEECCCCCC
T ss_pred             CEEEEEEEEECCCcCCCCCCC
Confidence            999999999999999988764

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2e-15  Score=98.83  Aligned_cols=103  Identities=17%  Similarity=0.202  Sum_probs=75.3

Q ss_pred             CCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeee-eeE-------EecCCcccE
Q psy6638         153 EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTL-KSV-------ELDNQYEGE  224 (273)
Q Consensus       153 ~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~  224 (273)
                      .+| .+|.++.+..   +.++++|+|++|..  .+|.|++|.|+|+..+........... ...       .........
T Consensus         6 ~~P-~aP~~v~v~~---~~~si~l~W~~P~~--~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (123)
T d1wfta_           6 SGP-GAPSTVRISK---NVDGIHLSWEPPTS--PSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLA   79 (123)
T ss_dssp             SCC-CCCEEEEEEE---CSSEEEEEEECCSS--CCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHT
T ss_pred             CCC-cCCcccEEEe---CCCEEEEEecCchh--cCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccE
Confidence            345 5888998865   67899999999876  478999999999987654322111111 001       111223456


Q ss_pred             EEcCCCCccceEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         225 LRIPGLTPYTKYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       225 ~~i~~L~p~~~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      ++|.+|+|++.|.|+|+|+|..|.|++|+...++|..
T Consensus        80 ~~i~~L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t~~  116 (123)
T d1wfta_          80 NAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGNS  116 (123)
T ss_dssp             TCCCBCSSSCEEEEEEEEBSSSSBCCCEEEEEECCSC
T ss_pred             EEEcCCCCCCEEEEEEEEecCCcCCCCCCcEEEEecC
Confidence            7889999999999999999999999999988888754

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.6e-15  Score=94.02  Aligned_cols=95  Identities=22%  Similarity=0.327  Sum_probs=80.1

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      .+|.+|..+++...+.+++.|.|.+|...++.+.+|.|+|+..+..+..   ..........+.+.+|.+++.|.|+|+|
T Consensus         2 a~P~~p~~~~~~~~s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~~~~~~---~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   78 (98)
T d1x5la1           2 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQS---YSTLKAVTTRATVSGLKPGTRYVFQVRA   78 (98)
T ss_dssp             CCCCCCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCSS---CEEEEESSSEEEECSCCTTCEEEECEEE
T ss_pred             cCCCCCCceEEEeccCCEEEEEEECCCCCCCCEEEEEEEeeccccccee---eEEecCCceEEEECCCCCCCEEEEEEEE
Confidence            5788999999999999999999999887778899999999986653331   1233346678999999999999999999


Q ss_pred             eCCCCCCCCCcceEEEec
Q psy6638         134 ENPLGMSETGAELQASTL  151 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~  151 (273)
                      .|..|.|.++..+.+.|.
T Consensus        79 ~n~~G~g~~S~~v~~~T~   96 (98)
T d1x5la1          79 RTSAGCGRFSQAMEVETG   96 (98)
T ss_dssp             EETTEECCCCCCEEEECC
T ss_pred             EcCCCCcCCCCCEEEEcC
Confidence            999999999998988874

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.62  E-value=1.2e-15  Score=96.10  Aligned_cols=91  Identities=16%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      +| .+|.++.+..   ..+++.|+|++|.+  .++.+.+|.|+|+........      ...........++++.+|.|+
T Consensus         5 vP-~~P~~~~v~~---~~~sv~lsW~pp~~--~~~~i~~Y~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~L~p~   72 (100)
T d1cfba1           5 VP-NAPKLTGITC---QADKAEIHWEQQGD--NRSPILHYTIQFNTSFTPASW------DAAYEKVPNTDSSFVVQMSPW   72 (100)
T ss_dssp             CC-CCCEEEEEEE---CSSEEEEEEECCCC--TTSCCCEEEEEEEESSSTTCC------EEEEEEEETTCSEEEEECCSS
T ss_pred             CC-CcCcCcEEEE---cCCEEEEEEcCCcc--cccceEEEEEEEecCCCCcee------eEEeeecCCceEEEEecCCCC
Confidence            44 5888888755   56789999999876  367899999999987654321      111111122457888999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEE
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFI  256 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~  256 (273)
                      +.|.|+|+|.|..|.|++|++..
T Consensus        73 t~Y~frV~A~n~~G~g~~S~~s~   95 (100)
T d1cfba1          73 ANYTFRVIAFNKIGASPPSAHSD   95 (100)
T ss_dssp             EEEEEEEEEEETTEECCCCCCCC
T ss_pred             CEEEEEEEEEeCCcCCCCcCCCc
Confidence            99999999999999999887543

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=5.5e-16  Score=101.11  Aligned_cols=104  Identities=14%  Similarity=0.165  Sum_probs=74.1

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .|+.+|..+.+..  .+.++|.|.|++|.... +..+.+|.|+|+....+....   .+....  ....+.++|.+|+|+
T Consensus        14 ~pp~~P~~p~v~~--vt~~sv~l~W~~P~~~~-g~~i~~y~i~y~~~~~~~~~~---~~~~~~--~~~~~~~~v~~L~p~   85 (120)
T d1wfua_          14 VPLSKPHPPVVGK--VTHHSIELYWDLEQKEK-RQGPQEQWLRFSIEEEDPKMH---SYGVIY--TGYATRHVVEGLEPR   85 (120)
T ss_dssp             CCCCCCCCCBCCC--EETTEEEEECTTTSCSC-CCSCGGGCCEEEEEEECTTTC---CEEEEE--EESCSEEEEESCCTT
T ss_pred             cCCCcCCCCEEeE--ecCCEEEEEEECCcccC-cccccceeeeeeeeccccccc---ceeeec--cccccEEeCCCCCCC
Confidence            4555666667777  78899999999987632 335677777776432111110   112221  223478999999999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                      +.|.|+|+|+|..|.|++|+.+.+.|....|+
T Consensus        86 t~Y~frV~A~n~~G~s~~S~~~~~~T~~~~pP  117 (120)
T d1wfua_          86 TLYKFRLKVTSPSGEYEYSPVVSVATTRESGP  117 (120)
T ss_dssp             CEEEEEEEEECSSSCEEECCCEEEECCCCCCC
T ss_pred             cEeeEEEEEEeCCcEeCCCCCEEEEeCCCCcC
Confidence            99999999999999999999999999766554

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.8e-15  Score=93.22  Aligned_cols=97  Identities=15%  Similarity=0.164  Sum_probs=78.3

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|.++++..  .+.+++.|+|+++.     +.+.+|.|+|+..++..        .... ......+++|.+|.|++.|
T Consensus         2 ~~P~~l~~~~--~t~~si~l~W~~p~-----~~i~~Y~v~~~~~~~~~--------~~~~-~~~~~~~~~l~~L~p~t~Y   65 (102)
T d2cuha1           2 DGPTQLRALN--LTEGFAVLHWKPPQ-----NPVDTYDIQVTAPGAPP--------LQAE-TPGSAVDYPLHDLVLHTNY   65 (102)
T ss_dssp             SSCEEEECCC--CSSSCEEEEEECCS-----SCCSEEEEEEECSSSCC--------EEEE-EETTCSEEEECSCCSSSEE
T ss_pred             cCCCccEEEE--eCCCEEEEEEEeee-----ccceeeEEEEEeccccc--------eeee-eeeeeeeEEEccEEeeEEE
Confidence            4788999988  89999999999874     35789999998765432        1111 2334679999999999999


Q ss_pred             EEEEEEecCCCcCCCCccEEEEcCCCCCcccccc
Q psy6638         237 AIVVRGYNSVGKGPFSEPFIARTNEGDFLFLFCA  270 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~~~~t~~~~P~~~~~~  270 (273)
                      .|+|+|++..|.|.++ .+.+.|..++|..|...
T Consensus        66 ~~~V~a~~~~~~s~~~-~~~~~T~~~~P~~l~~~   98 (102)
T d2cuha1          66 TATVRGLRGPNLTSPA-SITFTTGLEAPRDLEAK   98 (102)
T ss_dssp             EEEEEEEETTEECCCE-EEEEESCCCCTTTSSSC
T ss_pred             EEEEEEEeCCCCcCCE-EEEEECCCCCCCCCEee
Confidence            9999999999988766 47889999999888765

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3e-15  Score=93.07  Aligned_cols=93  Identities=24%  Similarity=0.365  Sum_probs=70.2

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|..+ +..  .+.+++.|+|++|..  .+|.+.+|.|+|+..+...+       .... ......+++|.+|.|++.|
T Consensus         2 ~~P~~~-~~~--~~~~sv~l~W~pP~~--~~g~i~~Y~i~~~~~~~~~~-------~~~~-~~~~~~~~~i~~L~p~t~Y   68 (94)
T d2dn7a1           2 GRPTMM-IST--TAMNTALLQWHPPKE--LPGELLGYRLQYCRADEARP-------NTID-FGKDDQHFTVTGLHKGTTY   68 (94)
T ss_dssp             CCCEEE-EEE--CSTTEEEEEEECCSS--CSSCCCEEEEEEEETTCSSC-------EEEE-EETTCCEEEEECCCTTCEE
T ss_pred             CCCcEe-EEE--EeCCEEEEEEeCCCC--CCCceEEEEEEEEEcCCCCc-------EEEE-cCCCccEEEEEccCCeeEE
Confidence            355443 444  578899999999876  47899999999998765432       1222 2233578999999999999


Q ss_pred             EEEEEEecCCCcCCCCccEEEEcCCCC
Q psy6638         237 AIVVRGYNSVGKGPFSEPFIARTNEGD  263 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~~~~t~~~~  263 (273)
                      .|+|+|+|..|.|++++ ..+.|++++
T Consensus        69 ~~~V~A~n~~G~g~~s~-~~~~T~edV   94 (94)
T d2dn7a1          69 IFRLAAKNRAGLGEEFE-KEIRTPEDL   94 (94)
T ss_dssp             EEEEEEEETTEEEEEEE-EEEECCCCC
T ss_pred             EEEEEEEcCCcCCCCcc-EEEeeCCCC
Confidence            99999999999998885 556676653

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.4e-16  Score=98.93  Aligned_cols=97  Identities=24%  Similarity=0.296  Sum_probs=72.2

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      |+.||..+.+..  .+.+++.|+|++|.... +..+.+|.++++......+       ............+++.+|+|++
T Consensus         2 Pp~pP~~p~~~~--~t~~sv~lsW~~P~~~~-g~~i~~y~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~L~p~t   71 (104)
T d1bpva_           2 PIDPPGKPVPLN--ITRHTVTLKWAKPEYTG-GFKITSYIVEKRDLPNGRW-------LKANFSNILENEFTVSGLTEDA   71 (104)
T ss_dssp             CCCCCCCCEEEE--EETTEEEEECCCCSCCT-TCCCSCCEEEEEETTSCCC-------EECCCSCCCSSEEEECSCCSSC
T ss_pred             CCCCCCCCEEEE--ecCCEEEEEEEeccccC-cceEEEEEEEeecccccce-------eEEEeeccceeEEEEcCCCCCC
Confidence            556676777766  78899999999986532 4478899999998765431       2222233446789999999999


Q ss_pred             eEEEEEEEecCCCc-CCCCccEEEEcCC
Q psy6638         235 KYAIVVRGYNSVGK-GPFSEPFIARTNE  261 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~-~~~s~~~~~~t~~  261 (273)
                      .|.|+|+|+|..|. |++|......|..
T Consensus        72 ~Y~frV~A~n~~G~~s~~S~~s~~vt~~   99 (104)
T d1bpva_          72 AYEFRVIAKNAAGAISPPSEPSDAITCR   99 (104)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEEEECSC
T ss_pred             EEEEEEEEEECCCCCCCCcCCCCCEEeC
Confidence            99999999999997 7777665554443

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.2e-15  Score=96.10  Aligned_cols=101  Identities=21%  Similarity=0.288  Sum_probs=76.2

Q ss_pred             CCCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCc
Q psy6638         153 EAPNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP  232 (273)
Q Consensus       153 ~~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  232 (273)
                      +.| .+|.++.+..  .+.+++.|+|++|.+  .++.+..|.|+|+..........  ..............+.|.+|.|
T Consensus         9 ~~P-~~P~~~~~~~--~~~~sv~l~W~pp~~--~~~~i~~y~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~L~p   81 (111)
T d1wisa1           9 ELP-GPPTNLGISN--IGPRSVTLQFRPGYD--GKTSISRWLVEAQVGVVGEGEEW--LLIHQLSNEPDARSMEVPDLNP   81 (111)
T ss_dssp             CCC-CCCEEEEEES--CCSSCEEEEEECCCC--CSSCCSEEEEEECBSCCSTTSCC--EEEEEEESCTTCSEEEECSCCT
T ss_pred             CCC-cCCCCCEEEE--cCCCEEEEEEeCCCC--CCCceeEEEEeeeecccCCCcce--eeeeeeecccceeEEEeCCCCC
Confidence            344 5889999988  899999999998876  46789999999987654332211  1112223444567899999999


Q ss_pred             cceEEEEEEEecCCCcCCCCcc-EEEEcC
Q psy6638         233 YTKYAIVVRGYNSVGKGPFSEP-FIARTN  260 (273)
Q Consensus       233 ~~~Y~~~v~a~n~~g~~~~s~~-~~~~t~  260 (273)
                      ++.|.|+|+|.|..|.|++|++ ..++|.
T Consensus        82 ~t~Y~frV~A~N~~G~s~~S~~s~~~~Tl  110 (111)
T d1wisa1          82 FTCYSFRMRQVNIVGTSPPSQPSRKIQTL  110 (111)
T ss_dssp             TSEECCCCEEECSSCBCCCCCCCCCEECC
T ss_pred             CCEEEEEEEEEcCCcCCCCcCCCCCEEcc
Confidence            9999999999999999999875 446664

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.2e-15  Score=95.64  Aligned_cols=88  Identities=25%  Similarity=0.337  Sum_probs=71.1

Q ss_pred             cCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEEEEecCCCc
Q psy6638         169 VDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVVRGYNSVGK  248 (273)
Q Consensus       169 ~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v~a~n~~g~  248 (273)
                      ++++++.|+|+++..   ++.|.+|.|+|+..+......   .+............++|.+|+|++.|.|+|+|+|..|.
T Consensus        27 ~s~tsi~v~W~~p~~---~~~i~gY~v~y~~~~~~~~~~---~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~  100 (120)
T d1ujta_          27 LTPTTVQVTWTVDRQ---PQFIQGYRVMYRQTSGLQATS---SWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQ  100 (120)
T ss_dssp             CBTTEEEEEEEESSC---CSSCCEEEEEEEESSSSSTTT---CCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCC
T ss_pred             eCCCeEEEEecCCCC---CCcEEEEEEEeeecccCCCCc---ceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcC
Confidence            678999999999864   678999999999875533211   22333444555678999999999999999999999999


Q ss_pred             CCCCccEEEEcCCC
Q psy6638         249 GPFSEPFIARTNEG  262 (273)
Q Consensus       249 ~~~s~~~~~~t~~~  262 (273)
                      |++|+.+.++|.++
T Consensus       101 G~~S~~~~~~T~e~  114 (120)
T d1ujta_         101 GMDSESKTVRTTEE  114 (120)
T ss_dssp             CCCCCCEEEEECSS
T ss_pred             cCCCCCEEEEeCCC
Confidence            99999999999875

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6e-15  Score=93.65  Aligned_cols=90  Identities=17%  Similarity=0.147  Sum_probs=64.2

Q ss_pred             eEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEE
Q psy6638         161 EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVV  240 (273)
Q Consensus       161 ~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v  240 (273)
                      .+.+..  .+++++.|+|+++..  .++.+.+|.|+|+...+..      .+............++|.+|.|++.|.|+|
T Consensus        12 ~p~~~~--~~~~~v~l~W~pp~~--~~~~~~~y~i~y~~~~~~~------~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV   81 (105)
T d2d9qb2          12 SPEAAP--PQAGCLQLSWEPWQP--GLHINQKCELRHKPQRGEA------SWALVGPLPLEALQYELCGLLPATAYTLQI   81 (105)
T ss_dssp             ---------CCSCEEEEEECCGG--GTTSCEEEEEEEEESSSCC------CCEEEEEECSCEEEEEECSCCSCCCEEEEE
T ss_pred             CCEeec--CCCCeEEEEEcCCCC--CCceeEEEEEEEEecCCcc------ceeeeecccCCcceeEEecccCCeEEEEEE
Confidence            445555  688999999999876  3677899999999865432      122333334456789999999999999999


Q ss_pred             EEecCCCcCC---CCccEEEEcC
Q psy6638         241 RGYNSVGKGP---FSEPFIARTN  260 (273)
Q Consensus       241 ~a~n~~g~~~---~s~~~~~~t~  260 (273)
                      +|.|..|.|.   ||..+.++|.
T Consensus        82 ra~n~~g~G~~S~wS~~~~~~t~  104 (105)
T d2d9qb2          82 RCIRWPLPGHWSDWSPSLELRTT  104 (105)
T ss_dssp             EEEECSSCCCCCCCCCCEEECCC
T ss_pred             EEEeCCCCCCCcCCCCCEEEeCC
Confidence            9999999864   5666777765

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=9.4e-15  Score=93.05  Aligned_cols=89  Identities=29%  Similarity=0.459  Sum_probs=73.0

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC--CCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE--MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      .+|.+|.++.+...+.+++.|+|.++.+++.++.+|.|+++....  .|.  ............+.+.+|.+++.|.|+|
T Consensus         9 ~pP~~P~~~~v~~~~~~sv~l~W~p~~~~g~~I~~Y~v~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~L~p~t~Y~frV   86 (108)
T d1x4za1           9 SPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWI--LATSAIPPSRLSVEITGLEKGISYKFRV   86 (108)
T ss_dssp             CCCCCCCCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCE--EEEEEECTTCCEEEEESCCTTCEEEEEE
T ss_pred             CCCccCCCCEEEEccCCEEEEEEECCCCCCCccEEEEEEEEecCCCCceE--EEEEeecCCccEEEECCCCCCCEEEEEE
Confidence            578899999999889999999999887777889999999997543  333  1223344567789999999999999999


Q ss_pred             EEeCCCCCCCCCc
Q psy6638         132 LAENPLGMSETGA  144 (273)
Q Consensus       132 ~a~~~~g~~~~s~  144 (273)
                      +|.|..|.|.+|.
T Consensus        87 ~A~N~~G~s~~S~   99 (108)
T d1x4za1          87 RALNMLGESEPSA   99 (108)
T ss_dssp             EEEETTEECCCCC
T ss_pred             EEECCCcCCCCCC
Confidence            9999999887765

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.7e-15  Score=93.42  Aligned_cols=96  Identities=25%  Similarity=0.378  Sum_probs=80.9

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ..+|++|.++++...+.+.+.|+|.+|..++.++..|.++++.....+.   .........+.+.+.+|.+++.|.|+|+
T Consensus         8 ~~~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~Y~i~~~~~~~~~~---~~~~~~~~~~~~~~~~L~p~t~Y~frV~   84 (105)
T d1x3da1           8 SCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGE---FCQCYMGSQKQFKITKLSPAMGCKFRLS   84 (105)
T ss_dssp             CSCCCCCCCCEEEEEETTEEEEECCCCCCCSSCEEEEEEEECTTTSSSC---CEEEEEESCSEEEEESCCTTCEEEEECC
T ss_pred             CCCCcCCCCCEEEEccCCEEEEEEECCCCCcCccEEEEEEEecCCCcce---eEEEecCCccEEEecCCcCCcEEEEEEE
Confidence            5678899999999999999999999998888899999999986554432   2333445678899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEec
Q psy6638         133 AENPLGMSETGAELQASTL  151 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~  151 (273)
                      |.|..|.|.++..+.+.|.
T Consensus        85 A~N~~G~s~~S~~~~~~T~  103 (105)
T d1x3da1          85 ARNDYGTSGFSEEVLYYTS  103 (105)
T ss_dssp             EEESSCBCCCCCCEEEECS
T ss_pred             EECCCeEcCCCCcEEEECC
Confidence            9999999999988887763

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.6e-17  Score=102.93  Aligned_cols=99  Identities=22%  Similarity=0.398  Sum_probs=76.5

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .|+.+|..+++..  .+++++.|+|++|..  .+|.|.+|.|+|+..+......     ............+.+.+|+++
T Consensus         3 ~~~d~P~~v~~~~--~~~~sv~l~W~pP~~--~ng~i~~Y~v~y~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~~   73 (102)
T d2dtge1           3 KADDIVGPVTHEI--FENNVVHLMWQEPKE--PNGLIVLYEVSYRRYGDEELHL-----CDTRKHFALERGCRLRGLSPG   73 (102)
T ss_dssp             CCCCCCCCCCCCS--SSSSCCCCCCCCCCS--CSSCEEEECCCCBSSSBCCCCC-----CCCSSSCCCTTCCCCCSCCSS
T ss_pred             CCCCCCCCCEEEE--ECCCEEEEEEEeCCC--CcceEEEeeeEEEecCCCCcee-----eeeeecccceEEEEEecccee
Confidence            4555677788877  889999999999876  5889999999998765432111     111123334567899999998


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEEEcCCC
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIARTNEG  262 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~~t~~~  262 (273)
                      + |.|+|+|.|..|.|++|+++.|.|++.
T Consensus        74 t-Y~~rV~A~n~~G~g~~S~~v~f~~~e~  101 (102)
T d2dtge1          74 N-YSVRIRATSLAGNGSWTEPTYFYVTDY  101 (102)
T ss_dssp             E-ECCCCCEEETTBCCCCCCCCEECCCCC
T ss_pred             e-EEEEEEEEcCCccCCCCCCEEEEccCC
Confidence            5 999999999999999999999999764

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-15  Score=98.92  Aligned_cols=102  Identities=25%  Similarity=0.389  Sum_probs=79.9

Q ss_pred             EEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC--CCCCccceEEecCCccEEEecCCCCCCeE
Q psy6638          50 LLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE--MWPTQPLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        50 ~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      +.+...|.+|.++.+...+.+++.|+|+++.+++.++.+|.|+++....  .|.    ........+.+.+.+|.|++.|
T Consensus        10 ~~~~~~P~pP~~~~v~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~----~~~~~~~~~~~~v~~L~p~t~Y   85 (117)
T d1uema_          10 YDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQ----TVANHVKTTLYTVRGLRPNTIY   85 (117)
T ss_dssp             CCSCCSCBCCCCCEEEEECSSCEEEECCCCBCSSSCCCEEEEEEEETTTEEEEE----EEEEEECSSEEEECSCCTTCEE
T ss_pred             ceeCccCcCCCCCEEEEccCCEEEEEEECCCcCCCCeEEEEEEEeccCCceeeE----EeccccccccceECCCCCCCEE
Confidence            3456789999999999999999999999887777789999999887543  232    1222235578999999999999


Q ss_pred             EEEEEEeCCCCCCCCCcce-EEEecCCCC
Q psy6638         128 QVRLLAENPLGMSETGAEL-QASTLEEAP  155 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~s~~~-~~~~~~~~p  155 (273)
                      .|+|+|.|..|.|.++... .+++.+..|
T Consensus        86 ~frV~A~N~~G~s~~S~~s~~v~t~~~~P  114 (117)
T d1uema_          86 LFMVRAINPQGLSDPSPMSDPVRTQDSGP  114 (117)
T ss_dssp             EEEEEEEETTEEEEECCCCCCEECCCSSC
T ss_pred             EEEEEEEeCCcCCCCcCCCcCEEeCCCCc
Confidence            9999999999988877654 356655544

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.7e-16  Score=98.59  Aligned_cols=100  Identities=29%  Similarity=0.544  Sum_probs=77.2

Q ss_pred             EEEEecCCCCCcceEEE--EeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCe
Q psy6638          49 QLLVQETPEAPKNIRIT--EESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQ  126 (273)
Q Consensus        49 ~~~~~~~P~~p~~~~~~--~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (273)
                      .+.+...|.+|.++.+.  ....+++.|+|.+|.++++++.+|.|+++..+..|.....  ......+.+.+.+|.+++.
T Consensus         4 ~l~v~~~P~~P~~p~~~~~~~~~~sv~l~W~~P~~~~~~I~~Y~v~~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~t~   81 (108)
T d1wf5a1           4 HLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLA--SVDPKATSVTVKGLVPARS   81 (108)
T ss_dssp             CSSCCCCCCCCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTTCCCEEEES--SCCTTCCEEEEESCCTTCE
T ss_pred             ccEEecCCCCCCCCEEEEEeccCCEEEEEEECCCCCCCccEEEEEEEEeccCCceEEee--eecCCccEEEECCCCCCCE
Confidence            34567788888775543  4567899999999987778899999999987776542111  2334567899999999999


Q ss_pred             EEEEEEEeCCCCCCCCCcceEEEe
Q psy6638         127 YQVRLLAENPLGMSETGAELQAST  150 (273)
Q Consensus       127 y~~~v~a~~~~g~~~~s~~~~~~~  150 (273)
                      |.|+|+|.|..|.|.++......+
T Consensus        82 Y~frV~A~N~~G~s~~S~~~~~~t  105 (108)
T d1wf5a1          82 YQFRLCAVNDVGKGQFSKDTERVS  105 (108)
T ss_dssp             EEEEEEEEESSCEEEECCCCSCEE
T ss_pred             EEEEEEEEcCCcCCCCcCCcCCEE
Confidence            999999999999888777665544

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.59  E-value=1.2e-14  Score=88.91  Aligned_cols=84  Identities=23%  Similarity=0.339  Sum_probs=67.6

Q ss_pred             CCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      |.+|.++.+..  .+.+++.|+|+++.+   ++.+.+|.|++...          ....     .....+++.+|.|++.
T Consensus         4 P~~P~~l~~~~--~~~~sv~lsW~~p~~---~~~i~~Y~i~~~~~----------~~~~-----~~~t~~~~~~L~p~t~   63 (88)
T d1k85a_           4 PTAPTNLASTA--QTTSSITLSWTASTD---NVGVTGYDVYNGTA----------LATT-----VTGTTATISGLAADTS   63 (88)
T ss_dssp             CCCCEEEEEEE--ECSSCEEEEEECCSC---CSSEEEEEEEESSS----------EEEE-----ESSSEEEECCCCSSCE
T ss_pred             cCCCCCcEEEE--ecCCEEEEEEeCCCC---CCCEEEEEEEccce----------EEEe-----cCCCEEEECCCCCCCE
Confidence            35889999988  899999999999876   45688999875321          1111     1246899999999999


Q ss_pred             EEEEEEEecCCC-cCCCCccEEEEc
Q psy6638         236 YAIVVRGYNSVG-KGPFSEPFIART  259 (273)
Q Consensus       236 Y~~~v~a~n~~g-~~~~s~~~~~~t  259 (273)
                      |.|+|+|+|..| .|++|+.+.++|
T Consensus        64 Y~~~V~A~n~~G~~s~~S~~v~vtT   88 (88)
T d1k85a_          64 YTFTVKAKDAAGNVSAASNAVSVKT   88 (88)
T ss_dssp             EEEEEEEEETTTEECCCCCCEEEEC
T ss_pred             EEEEEEEEECCCCcCCCCcCEEEEC
Confidence            999999999999 599999988876

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.9e-15  Score=94.34  Aligned_cols=103  Identities=20%  Similarity=0.304  Sum_probs=76.0

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .||.++.+.....+.++++|+|+++..  .++.+.+|.|+|+...+..+..     ............+.|.+|.+++.|
T Consensus         6 ~pP~~~~v~~~~~~~~si~v~W~~p~~--~~~~~~~Y~v~y~~~~~~~~~~-----~~~~~~~~~~~~~~i~~L~~~t~Y   78 (115)
T d1bqua2           6 NPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQYRTKDASTWSQ-----IPPEDTASTRSSFTVQDLKPFTEY   78 (115)
T ss_dssp             CCCEEEEEECC--CCSCEEEEEECCGG--GGTSCEEEEEEEEETTCSSCEE-----CCGGGGCSCCSEEEECSCCSSEEE
T ss_pred             CCCCCCEEEEeccCCCEEEEEEeeccc--cccceeeeeeeeeeeeeeeeec-----cccccccccccEEeeCCCccCcEE
Confidence            477777665311567889999999876  4778999999999876643211     111222344578999999999999


Q ss_pred             EEEEEEecCCCcCCC---CccEEEEcCCCCCcc
Q psy6638         237 AIVVRGYNSVGKGPF---SEPFIARTNEGDFLF  266 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~---s~~~~~~t~~~~P~~  266 (273)
                      .|+|+|.|..|.|.+   |..+.++|.+++|+.
T Consensus        79 ~~~V~a~~~~G~g~~S~~S~~~~~~T~~~~P~~  111 (115)
T d1bqua2          79 VFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK  111 (115)
T ss_dssp             EEEEEEEETTSCSCCCCCCCCEEEEECCCHHHH
T ss_pred             EEEEEEEeCCCccCCcCCcCCEEEECCCCCCCC
Confidence            999999999998754   567889998887753

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.4e-14  Score=91.84  Aligned_cols=97  Identities=21%  Similarity=0.235  Sum_probs=74.3

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .||.++++..  .+.+++.|+|++|........+..|.++++..+......      ...........+.|.+|+|++.|
T Consensus         4 ~pP~~l~v~~--~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~i~~L~p~t~Y   75 (104)
T d2b5ib2           4 MAPISLQVVH--VETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEA------PLLTLKQKQEWICLETLTPDTQY   75 (104)
T ss_dssp             CCCEEEEEEE--ECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTS------CCEEECSCCCEEEECSCCTTCEE
T ss_pred             CCCCCcEEEE--EeCCEEEEEEccccccccccceeEEEEEEecccccceee------eEEecCCCcEEEEECCCCCCCEE
Confidence            4889999998  899999999999977544556678999998776543211      11112223578999999999999


Q ss_pred             EEEEEEecCCCc----CCCCccEEEEcCC
Q psy6638         237 AIVVRGYNSVGK----GPFSEPFIARTNE  261 (273)
Q Consensus       237 ~~~v~a~n~~g~----~~~s~~~~~~t~~  261 (273)
                      .|+|+|.+..|.    |++|..+.|+|.+
T Consensus        76 ~~rVra~~~~g~~g~wS~wS~~v~~~T~P  104 (104)
T d2b5ib2          76 EFQVRVKPLQGEFTTWSPWSQPLAFRTKP  104 (104)
T ss_dssp             EEEEEEEESCCSSCCCCCCCCCEEEECCC
T ss_pred             EEEEEEEECCCCCCCCCCCcCCEEEECCC
Confidence            999999998875    5678889999864

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2e-14  Score=89.52  Aligned_cols=94  Identities=22%  Similarity=0.327  Sum_probs=76.8

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeC
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAEN  135 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~  135 (273)
                      |..|..+.+...+.+++.|.|++|...++.+.+|.++++........   ........+.+.+.+|.|++.|.|+|+|.|
T Consensus         1 P~~~~~l~~~~~t~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~---~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   77 (95)
T d2djsa1           1 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFN---SSMARSQTNTARIDGLRPGMVYVVQVRART   77 (95)
T ss_dssp             CCCCSCCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSCSTT---CEEEEESSSEEEEESCCTTCEEEEEEEEEE
T ss_pred             CCCCCccEEEeecCCEEEEEEEECCCCCcceEEeeeeeeeeccCcce---eEeecCCccEEEEeecCCccEEEEEEEEEc
Confidence            55666788899999999999999887788999999999986543221   122334667899999999999999999999


Q ss_pred             CCCCCCCCcceEEEecC
Q psy6638         136 PLGMSETGAELQASTLE  152 (273)
Q Consensus       136 ~~g~~~~s~~~~~~~~~  152 (273)
                      ..|.|.++..+.++|.+
T Consensus        78 ~~G~g~~S~~~~~~T~~   94 (95)
T d2djsa1          78 VAGYGKFSGKMCFQTLT   94 (95)
T ss_dssp             SSCEEEECCCEEEECCC
T ss_pred             CCCCCCCCCCEEEEeCC
Confidence            99999999988888753

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.2e-15  Score=93.02  Aligned_cols=93  Identities=26%  Similarity=0.416  Sum_probs=73.5

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|.++.+..  .+.+++.|+|++|..  .+|.+.+|.|+|+...........+  ............++|.+|++++.|
T Consensus         4 ~~P~~~~~~~--~~~~sv~v~W~~P~~--~~g~i~~Y~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y   77 (103)
T d1qg3a2           4 SEPGRLAFNV--VSSTVTQLSWAEPAE--TNGEITAYEVCYGLVNDDNRPIGPM--KKVLVDNPKNRMLLIENLRESQPY   77 (103)
T ss_dssp             CCCCCCEEEE--EETTEEEEECCCCSC--CSSCCCEEEEEEEEBCTTSCBCSCC--EEEEECCTTCCEEEECCCCTTCCE
T ss_pred             ccCCCcEEEE--ecCCEEEEEEEECcc--CCCCceEEEEEeeccccccccccce--EEEEecCCCceEEEEeecCCCCEE
Confidence            4788999988  899999999999876  4789999999999876543322222  223334455678999999999999


Q ss_pred             EEEEEEecCCCcCCCCccE
Q psy6638         237 AIVVRGYNSVGKGPFSEPF  255 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~  255 (273)
                      .|+|+|+|..|.|++++..
T Consensus        78 ~~~V~A~n~~G~g~~s~~~   96 (103)
T d1qg3a2          78 RYTVKARNGAGWGPEREAI   96 (103)
T ss_dssp             EEEEEEEETTEECCCEEEE
T ss_pred             EEEEEEEcCCccCCCcccc
Confidence            9999999999999887543

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=8.7e-15  Score=91.47  Aligned_cols=87  Identities=21%  Similarity=0.416  Sum_probs=70.4

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      +|++|.++.+...+.+++.|+|.+|.. ++.++.+|.|+++..+ ..|....   ......+.+.+.+|.+++.|.|+|+
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~---~~~~~~~~~~v~~L~~~~~Y~frV~   77 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPAN---KEPVERCGFTVKDLPTGARILFRVV   77 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESS---SSCBSSSEEEEECCCTTCCEEEEEE
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEee---eecCceeEEEECCCcCCeEEEEEEE
Confidence            688999999999999999999998764 4557999999998865 3554211   1233567899999999999999999


Q ss_pred             EeCCCCCCCCCc
Q psy6638         133 AENPLGMSETGA  144 (273)
Q Consensus       133 a~~~~g~~~~s~  144 (273)
                      |.|..|.|.++.
T Consensus        78 A~n~~G~s~~s~   89 (98)
T d1x5ya1          78 GVNIAGRSEPAT   89 (98)
T ss_dssp             EEETTEECCCCC
T ss_pred             EECCCcCCCCcC
Confidence            999999887654

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.57  E-value=1.4e-14  Score=91.04  Aligned_cols=93  Identities=26%  Similarity=0.334  Sum_probs=71.9

Q ss_pred             EecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          52 VQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        52 ~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      |+++|++|.++.+. ...+++.|+|.++.++++++.+|.|+++.....+.... ........+.+.+.+|.|++.|.|+|
T Consensus         2 V~dvP~~P~~~~v~-~~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~p~t~Y~frV   79 (100)
T d1cfba1           2 VQDVPNAPKLTGIT-CQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDA-AYEKVPNTDSSFVVQMSPWANYTFRV   79 (100)
T ss_dssp             CCCCCCCCEEEEEE-ECSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEE-EEEEEETTCSEEEEECCSSEEEEEEE
T ss_pred             cccCCCcCcCcEEE-EcCCEEEEEEcCCcccccceEEEEEEEecCCCCceeeE-EeeecCCceEEEEecCCCCCEEEEEE
Confidence            56789999999876 46678999999998878899999999998654322111 11222345667888999999999999


Q ss_pred             EEeCCCCCCCCCcce
Q psy6638         132 LAENPLGMSETGAEL  146 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~  146 (273)
                      +|.|..|.|.++.+.
T Consensus        80 ~A~n~~G~g~~S~~s   94 (100)
T d1cfba1          80 IAFNKIGASPPSAHS   94 (100)
T ss_dssp             EEEETTEECCCCCCC
T ss_pred             EEEeCCcCCCCcCCC
Confidence            999999998887654

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3e-14  Score=90.19  Aligned_cols=90  Identities=16%  Similarity=0.255  Sum_probs=68.2

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .||.++.+......+..+.|+|++|.....++.+..|.|+|+..+...       +..... ......++|.+|.|++.|
T Consensus         3 ~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~-------~~~~~~-~~~~~~~~i~~L~p~t~Y   74 (104)
T d1n26a3           3 DPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKT-------FTTWMV-KDLQHHCVIHDAWSGLRH   74 (104)
T ss_dssp             CCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSC-------CEEEEC-GGGCSEEEESSCCTTCCE
T ss_pred             cCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCc-------eeeecc-ccceEEEEECCCCCCCEE
Confidence            578888776511356789999999875444678899999999876543       222222 234578999999999999


Q ss_pred             EEEEEEecCCCcCCCCcc
Q psy6638         237 AIVVRGYNSVGKGPFSEP  254 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~  254 (273)
                      .|+|+|.|..|.|.+|++
T Consensus        75 ~~rVra~n~~g~g~wSew   92 (104)
T d1n26a3          75 VVQLRAQEEFGQGEWSEW   92 (104)
T ss_dssp             EEEEEEEETTTBSCCCCC
T ss_pred             EEEEEEEeCCCccCCcCC
Confidence            999999999999877764

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.6e-14  Score=89.26  Aligned_cols=99  Identities=24%  Similarity=0.384  Sum_probs=77.6

Q ss_pred             cCC-CCCcceEEEE--eeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          54 ETP-EAPKNIRITE--ESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        54 ~~P-~~p~~~~~~~--~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..| .+|.++.+..  .+...+.|+|++|...++.+.+|.++++...................+.+.|.+|.+++.|.|+
T Consensus         9 ~~P~~pP~~~~v~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   88 (111)
T d1x5ka1           9 LVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFK   88 (111)
T ss_dssp             CCCCSCCEEEEEEECSSCTTCEEEEEECCSCCSSCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCCSSSEEEEE
T ss_pred             CCCCCCCCCcEEEEecCCCCEEEEEEEccccCCCceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCCCCCEEEEE
Confidence            344 5788887664  3567899999998877889999999998754322212223445567788999999999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEecC
Q psy6638         131 LLAENPLGMSETGAELQASTLE  152 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~~  152 (273)
                      |+|.|..|.|.+|..+.++|.+
T Consensus        89 V~A~n~~G~g~~S~~v~~~T~~  110 (111)
T d1x5ka1          89 IQARNSKGMGPMSEAVQFRTPK  110 (111)
T ss_dssp             EEEECSSCBCCCCCCEEEECCC
T ss_pred             EEEEcCCCCcCCCCCEEEECCC
Confidence            9999999999999988888753

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-14  Score=94.96  Aligned_cols=100  Identities=16%  Similarity=0.135  Sum_probs=76.7

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|.++.+..  .+.+++.|+|+++..  .++.+..|.++|+..+.......     ... .......+.+.+|++++.|
T Consensus        18 ~~P~~~~v~~--~~~~sv~l~W~~p~~--~~~~i~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~i~~L~p~t~Y   87 (127)
T d1ueya_          18 NPPFDLELTD--QLDKSVQLSWTPGDD--NNSPITKFIIEYEDAMHKPGLWH-----HQT-EVSGTQTTAQLNLSPYVNY   87 (127)
T ss_dssp             CCCEEEEEEC--CSSSCEEEEEECCCC--CSSCEEEEEEEEEBTTTCTTCEE-----EEE-EEESSCCEEEECCCTTCEE
T ss_pred             cCCCCcEEEE--ecCCeEEEEEeCCcc--cccceEeeeeeeccccccceeEE-----EEe-ecCCceEEEECCCccCCEE
Confidence            5889999988  899999999999876  46788999999987655432211     111 1122467889999999999


Q ss_pred             EEEEEEecCCCcCCCCcc-EEEEcCCCCCcc
Q psy6638         237 AIVVRGYNSVGKGPFSEP-FIARTNEGDFLF  266 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~-~~~~t~~~~P~~  266 (273)
                      .|+|+|+|..|.|++|+. ..++|.+..|..
T Consensus        88 ~frV~A~n~~G~s~~S~~s~~~~t~~~~P~~  118 (127)
T d1ueya_          88 SFRVMAVNSIGKSLPSEASEQYLTKASEPDK  118 (127)
T ss_dssp             CCEEEEEESSCBCCCCSCCCCEECCCSSCSS
T ss_pred             EEEEEEEcCCcCcCCcCCcccEEcCCCCCCC
Confidence            999999999999998876 446777776643

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.4e-14  Score=87.28  Aligned_cols=91  Identities=20%  Similarity=0.231  Sum_probs=67.3

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      .|.++.+......++++.|+|++|..    +.|.+|.|+|+..++...      +.... .+.....++|.+|+|++.|.
T Consensus         2 aP~~~~vt~~~~~~~s~~vsW~~P~~----~~i~~Y~i~y~~~~~~~~------~~~~~-v~~~~~~~~l~gL~P~t~Y~   70 (93)
T d1owwa_           2 GPVEVFITETPSQPNSHPIQWNAPQP----SHISKYILRWRPKNSVGR------WKEAT-IPGHLNSYTIKGLKPGVVYE   70 (93)
T ss_dssp             CCCEEECCCCSSCTTCEEEEEECCSS----SCEEEEEEEEEETTCSSC------CEEEE-ECSSCCEEEECSCCSSEEEE
T ss_pred             cCcccEEEEccCCCCEEEEEeecccc----cceeEEEEEEeeccccce------eeeec-cCCCccEEEECCcccCcEEE
Confidence            34566665411345899999999853    569999999998765431      22333 34456899999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEcC
Q psy6638         238 IVVRGYNSVGKGPFSEPFIARTN  260 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t~  260 (273)
                      |+|.|+|..|.|+.+ .+.|+|.
T Consensus        71 v~v~av~~~G~s~~~-~~~~tT~   92 (93)
T d1owwa_          71 GQLISIQQYGHQEVT-RFDFTTT   92 (93)
T ss_dssp             EEEEEEESSSCEEEE-EEEEEEC
T ss_pred             EEEEEEeCCCccCcE-EEEEEec
Confidence            999999999999877 4667663

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.6e-14  Score=88.23  Aligned_cols=88  Identities=14%  Similarity=0.240  Sum_probs=69.6

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++++..  .+.+++.|+|++|..    +.+.+|.|+|+..++..       ............+++|.+|+|++.|.
T Consensus         8 ~P~~l~v~~--~t~~si~l~W~~p~~----~~i~~Y~v~~~~~~~~~-------~~~~~~~~~~~t~~~i~~L~p~t~Y~   74 (95)
T d2fnba_           8 QLTDLSFVD--ITDSSIGLRWTPLNS----STIIGYRITVVAAGEGI-------PIFEDFVDSSVGYYTVTGLEPGIDYD   74 (95)
T ss_dssp             CCTTCEEEC--CCSSCEEEECCCCCC----SSCCEEEEEEEEETSCC-------EEEEEECCSSCSEEEECCCCTTSEEE
T ss_pred             cCCCeEEEE--EcCCEEEEEEEecCC----ceEEeEEEEEEEeeccc-------eEEEEEeCCCCeEEEEecccCCEEEE
Confidence            577899888  899999999999853    45889999999876543       12223345556899999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEc
Q psy6638         238 IVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      |+|+|+|..|.|+++ .+.+.|
T Consensus        75 ~~V~a~~~~g~s~p~-~~~~~T   95 (95)
T d2fnba_          75 ISVITLINGGESAPT-TLTQQT   95 (95)
T ss_dssp             EEEEEEETTEECCCC-EEEEEC
T ss_pred             EEEEEEeCCcEeCCE-EEEEEC
Confidence            999999999999877 454443

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.1e-14  Score=91.17  Aligned_cols=89  Identities=17%  Similarity=0.127  Sum_probs=61.9

Q ss_pred             eEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEE
Q psy6638         161 EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVV  240 (273)
Q Consensus       161 ~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v  240 (273)
                      ...+..  .+++++.|+|++|..  .++.+++|.|+|+...+..      .+..+.........++|.+|.|++.|.|+|
T Consensus        13 ~p~~~~--~~~~~i~v~W~pp~~--~~~~~~~Y~i~y~~~~~~~------~w~~v~~~~~~~~~~~l~~L~p~t~Y~frV   82 (106)
T d1cd9b2          13 GPDVVS--HQPGCLWLSWKPWKP--SEYMEQECELRYQPQLKGA------NWTLVFHLPSSKDQFELCGLHQAPVYTLQM   82 (106)
T ss_dssp             ---------CCSCEEEEEECCGG--GTTSCEEEEEEEEESSTTC------CCEEEEEEESCEEEEEECCCCSCSCEEEEE
T ss_pred             CCeEec--CCCCEEEEEEcCccc--CCccceEEEEEEeeccccc------cceeeecccCCceEEEEeccCCCeEEEEEE
Confidence            445555  688999999999876  3667899999999764432      122333333446789999999999999999


Q ss_pred             EEecCCCcCCCC---ccEEEEc
Q psy6638         241 RGYNSVGKGPFS---EPFIART  259 (273)
Q Consensus       241 ~a~n~~g~~~~s---~~~~~~t  259 (273)
                      +|++..|.|.||   ..+.++|
T Consensus        83 ra~~~~g~g~wS~wS~~~~~~~  104 (106)
T d1cd9b2          83 RCIRSSLPGFWSPWSPGLQLRP  104 (106)
T ss_dssp             EEEESSSCCCCCCCCCCEEECC
T ss_pred             EEEeCCCCCCCcCCCCCeEecC
Confidence            999999986655   4455554

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=5.7e-14  Score=88.75  Aligned_cols=95  Identities=17%  Similarity=0.206  Sum_probs=70.1

Q ss_pred             CCCeeEEecC--CccCCceEEEEEeCCCCCC--ccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCc
Q psy6638         157 GAPREVTSDP--GVVDPTELLIKWKAPPRES--WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP  232 (273)
Q Consensus       157 ~~p~~~~~~~--~~~~~~~i~l~W~~~~~~~--~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  232 (273)
                      .||.++.+..  .....+++.|+|++|....  .++.++.|+|+|+..+...+       .....  ...+.+++.+|.+
T Consensus         4 ~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~-------~~~~~--~~~~~~~i~~L~p   74 (103)
T d1f6fb2           4 EPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEW-------EIHFT--GHQTQFKVFDLYP   74 (103)
T ss_dssp             CCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCC-------EEEEE--ETCSEEEECCCCT
T ss_pred             CCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcce-------eeecc--cceeEEEeCCCCc
Confidence            5788877642  0135678999999996532  23467899999998876532       12211  2246899999999


Q ss_pred             cceEEEEEEEecCCCc-CCCCccEEEEcC
Q psy6638         233 YTKYAIVVRGYNSVGK-GPFSEPFIARTN  260 (273)
Q Consensus       233 ~~~Y~~~v~a~n~~g~-~~~s~~~~~~t~  260 (273)
                      ++.|.|+|+|.+..|. |+||+...+.++
T Consensus        75 ~t~Y~~rVra~~~~G~wS~wS~~~~~~~P  103 (103)
T d1f6fb2          75 GQKYLVQTRCKPDHGYWSRWSQESSVEMP  103 (103)
T ss_dssp             TCEEEEEEEEEESSSCCCCCCCCEEEECC
T ss_pred             ceEEEEEEEEEeCCCCCCCCcCceeeECc
Confidence            9999999999999997 999999888764

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.6e-14  Score=91.88  Aligned_cols=98  Identities=23%  Similarity=0.325  Sum_probs=79.0

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ...|.+|.++.+...+.+++.|.|.+|...++.+.+|.|+|+..+...... .........+.+.+.+|.+++.|.|+|+
T Consensus        18 ~~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~y~~~~~~~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   96 (117)
T d1wfoa1          18 DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTA-TVEVLAPSARQYTATGLKPESVYLFRIT   96 (117)
T ss_dssp             CCCCCCCCCCEEEEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCCSCC-CEEEECTTCCEEEEESCCSSSEEEEEEE
T ss_pred             CCCCcCCCCcEEEEecCCEEEEEEECCCCCCCceEEEeeeeeeccCCCceE-eEEecCCceEEEEECCCCCCCEEEEEEE
Confidence            467899999999999999999999998777788999999998765422111 1223455678899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEec
Q psy6638         133 AENPLGMSETGAELQASTL  151 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~  151 (273)
                      |.|..|.|.++..+.++|.
T Consensus        97 A~n~~G~g~~S~~~~~tT~  115 (117)
T d1wfoa1          97 AQTRKGWGEAAEALVVTTE  115 (117)
T ss_dssp             EECSSCEEEEEEEEEECCS
T ss_pred             EECCCcCCCCcCCEEEECC
Confidence            9999998888876666654

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2e-14  Score=94.57  Aligned_cols=112  Identities=24%  Similarity=0.357  Sum_probs=86.6

Q ss_pred             EEEecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEE
Q psy6638          50 LLVQETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQV  129 (273)
Q Consensus        50 ~~~~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~  129 (273)
                      ..+...|++|.++++.....+++.|+|+++...+..+..|.++++......... .........+.+.+.+|.+++.|.|
T Consensus        11 ~~v~d~P~~P~~~~v~~~~~~sv~l~W~~p~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~f   89 (127)
T d1ueya_          11 APVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLW-HHQTEVSGTQTTAQLNLSPYVNYSF   89 (127)
T ss_dssp             CCCCCSCCCCEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCE-EEEEEEESSCCEEEECCCTTCEECC
T ss_pred             ccccccCcCCCCcEEEEecCCeEEEEEeCCcccccceEeeeeeeccccccceeE-EEEeecCCceEEEECCCccCCEEEE
Confidence            345678999999999999999999999998877788899999998754321111 1122233556788999999999999


Q ss_pred             EEEEeCCCCCCCCCcc-eEEEecCCCCCCCCeeE
Q psy6638         130 RLLAENPLGMSETGAE-LQASTLEEAPNGAPREV  162 (273)
Q Consensus       130 ~v~a~~~~g~~~~s~~-~~~~~~~~~p~~~p~~~  162 (273)
                      +|+|.|..|.|.++.. ..+.+.+..|+.+|.++
T Consensus        90 rV~A~n~~G~s~~S~~s~~~~t~~~~P~~~P~~~  123 (127)
T d1ueya_          90 RVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSG  123 (127)
T ss_dssp             EEEEEESSCBCCCCSCCCCEECCCSSCSSCSSCC
T ss_pred             EEEEEcCCcCcCCcCCcccEEcCCCCCCCCCCCC
Confidence            9999999999988765 35677777777777654

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4e-14  Score=88.31  Aligned_cols=93  Identities=20%  Similarity=0.343  Sum_probs=74.9

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      |.+|.++++...+.+++.|+|++|.. ++..+..|.++++..+..+.   .........+.+.+.+|.+++.|.|+|+|.
T Consensus         1 P~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~---~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~   77 (96)
T d1x5xa1           1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYG---FKPKYDGEDLAYTVKNLRRSTKYKFKVIAY   77 (96)
T ss_dssp             CCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCC---CEEEEEESCSEEEEESCCSSCEEEEEEEEE
T ss_pred             CccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceee---eEEeecCCCCEEEECCCCCCCEEEEEEEEE
Confidence            67888888999999999999998764 44567888888877654333   123344567789999999999999999999


Q ss_pred             CCCCCCCCCcceEEEec
Q psy6638         135 NPLGMSETGAELQASTL  151 (273)
Q Consensus       135 ~~~g~~~~s~~~~~~~~  151 (273)
                      |..|.|.++..+.++|.
T Consensus        78 n~~G~s~~S~~~~~~T~   94 (96)
T d1x5xa1          78 NSEGKSNPSEVVEFTTC   94 (96)
T ss_dssp             CSSCEEEECCCEEEECC
T ss_pred             cCCcEeCCCCCEEEEeC
Confidence            99999999988888874

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.8e-14  Score=88.34  Aligned_cols=96  Identities=20%  Similarity=0.220  Sum_probs=67.4

Q ss_pred             CCCCeeEEecC--CccCCceEEEEEeCCCCCC--ccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCC
Q psy6638         156 NGAPREVTSDP--GVVDPTELLIKWKAPPRES--WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLT  231 (273)
Q Consensus       156 ~~~p~~~~~~~--~~~~~~~i~l~W~~~~~~~--~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~  231 (273)
                      |.||.++.+..  ...+.+.+.|+|++|....  ..+.+..|+++++..+...+.       ...  ......++|.+|.
T Consensus         3 P~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~-------~~~--~~~~~~~~i~~L~   73 (104)
T d3d48r2           3 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWE-------IHF--AGQQTEFKILSLH   73 (104)
T ss_dssp             CCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCE-------EEE--EETCSEEEECC--
T ss_pred             CcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeecccccccccee-------eec--cccccEEEECCCC
Confidence            35788887642  0135678999999986532  134567899999887654321       111  1224689999999


Q ss_pred             ccceEEEEEEEecCCCc-CCCCccEEEEcC
Q psy6638         232 PYTKYAIVVRGYNSVGK-GPFSEPFIARTN  260 (273)
Q Consensus       232 p~~~Y~~~v~a~n~~g~-~~~s~~~~~~t~  260 (273)
                      +++.|.|+|+|.|..|. |++|+.+.++|+
T Consensus        74 p~t~Y~~rVrA~n~~G~ws~wS~~~~v~tP  103 (104)
T d3d48r2          74 PGQKYLVQVRCKPDHGYWSAWSPATFIQIP  103 (104)
T ss_dssp             CCCEEEEEEEEEESSSCCCCCCCCEEEECC
T ss_pred             CCCEEEEEEEEEeCCCCCCCCcCCEEEECc
Confidence            99999999999999997 999999999886

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.5e-14  Score=88.43  Aligned_cols=97  Identities=25%  Similarity=0.405  Sum_probs=79.2

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCC-CCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPY-SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ..|.+|.++.+...+.+++.|+|.+|. ..++.+..|.|.++..+..+..  .........+.+.+.+|.|++.|.|+|+
T Consensus         9 ~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~p~t~Y~~rV~   86 (107)
T d1x5fa1           9 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARER--VENTSHPGEMQVTIQNLMPATVYIFRVM   86 (107)
T ss_dssp             CCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCE--EEECSSTTCSEEEECSCCTTCEEEEEEE
T ss_pred             CCCcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceE--EEEEeCCCccEEEecCCCCCCEEEEEEE
Confidence            568899999999999999999999875 4567889999999886554331  1223445677899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecC
Q psy6638         133 AENPLGMSETGAELQASTLE  152 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~  152 (273)
                      |.|..|.|.++..+.+.|.+
T Consensus        87 A~n~~G~g~~S~~i~v~T~~  106 (107)
T d1x5fa1          87 AQNKHGSGESSAPLRVETQP  106 (107)
T ss_dssp             EECSSCEEEECCCEEEECCC
T ss_pred             EEeCCCCcCCCCCEEEECCC
Confidence            99999999888888888753

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.7e-14  Score=86.80  Aligned_cols=92  Identities=24%  Similarity=0.434  Sum_probs=70.2

Q ss_pred             CCCCCcceEEE-EeeccEEEEEEeCCCC-CCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          55 TPEAPKNIRIT-EESSRSLQISWTAPYS-GNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        55 ~P~~p~~~~~~-~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      +|.++....+. .....++.|+|.+|.. ++.++..|.|+++..+. .|.     .......+.+.+.+|.+++.|.|+|
T Consensus         1 PP~p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~-----~~~~~~~~~~~v~~L~p~t~Y~frV   75 (97)
T d2crza1           1 PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPR-----EVYQGSEVECTVSSLLPGKTYSFRL   75 (97)
T ss_dssp             CCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCE-----EEEEESCSEEEEESCCTTCEEEECC
T ss_pred             CcCcCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCcee-----EeecCCceEEEEcCCCCCEEEEEEE
Confidence            34555544443 3457899999998864 44578999999988654 333     2234466789999999999999999


Q ss_pred             EEeCCCCCCCCCcceEEEec
Q psy6638         132 LAENPLGMSETGAELQASTL  151 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~~~~~~  151 (273)
                      +|.|..|.|.++....+.+.
T Consensus        76 ~A~N~~G~s~~S~~~~~~T~   95 (97)
T d2crza1          76 RAANKMGFGPFSEKCDITTA   95 (97)
T ss_dssp             EEECSSCBCCCCCCEEEECC
T ss_pred             EEecCCeEcCCcCCCeEEeC
Confidence            99999999999998887764

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.1e-13  Score=85.47  Aligned_cols=89  Identities=19%  Similarity=0.237  Sum_probs=69.4

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++.+..  .+.+++.|+|++|.     +.+.+|.|+|+..++...     ..............++|.+|.|++.|.
T Consensus         3 aP~~l~v~~--~~~~sv~v~W~~p~-----~~~~~y~v~y~~~~~~~~-----~~~~~~~~~~~~~~~~i~~L~p~t~Y~   70 (92)
T d1tdqa2           3 APKNLRVGS--RTATSLDLEWDNSE-----AEAQEYKVVYSTLAGEQY-----HEVLVPKGIGPTTKTTLTDLVPGTEYG   70 (92)
T ss_dssp             CCEEEEEEE--ECSSCEEEEEECCS-----SCCSEEEEEEEETTCCCC-----EEEEEECCSSSEEEEEECSCCTTCEEE
T ss_pred             cCcCCEEEE--ecCCEEEEEEEecC-----CcccceEEEEEEcCCCcc-----eeeEEEecCCCeeEEEECCccCCCEEE
Confidence            577899988  89999999999974     357899999998765431     111222234456789999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEc
Q psy6638         238 IVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      |+|+|++..|.|+++ .+.++|
T Consensus        71 ~~V~a~~~~g~s~p~-~~~~~T   91 (92)
T d1tdqa2          71 VGISAVMNSKQSIPA-TMNART   91 (92)
T ss_dssp             EEEEEEETTEECCCE-EEEEEC
T ss_pred             EEEEEEeCCCEecCE-EEEEEC
Confidence            999999999999866 566766

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=9.9e-15  Score=92.92  Aligned_cols=88  Identities=10%  Similarity=0.153  Sum_probs=58.3

Q ss_pred             EecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCc-cceeeee----eeEEecCCcccEEEcCCCCccceEE
Q psy6638         163 TSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSL-ALSSYTL----KSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       163 ~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      .+..  .+.+++.|+|.+|.+  .++.|++|.|+|+..+.... .......    ............++|.+|+|++.|.
T Consensus         7 ~v~~--~~~~sv~l~W~~P~~--~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   82 (107)
T d2ic2a1           7 NVTR--LSDESVMLRWMVPRN--DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYR   82 (107)
T ss_dssp             EEEE--CC---EEEEEEEECC--SSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEEEE
T ss_pred             EEEE--EECCEEEEEEEeCcc--ccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcEEE
Confidence            4455  688999999999976  36789999999987654321 1000000    0011122335679999999999999


Q ss_pred             EEEEEecCCCcCCCCcc
Q psy6638         238 IVVRGYNSVGKGPFSEP  254 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~  254 (273)
                      |+|+|.|..|.|++|..
T Consensus        83 frV~A~N~~G~s~~S~~   99 (107)
T d2ic2a1          83 FRILAVYSNNDNKESNT   99 (107)
T ss_dssp             EEEEEEETTSCEEECCC
T ss_pred             EEEEEEcCCCCCCCCCC
Confidence            99999999999887754

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4e-14  Score=89.29  Aligned_cols=94  Identities=34%  Similarity=0.519  Sum_probs=75.7

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      .+.|.+|.++++.....+++.|+|.+|.  ++.+.+|.|+|+.....+..   .. .....+++.+.+|.|++.|.|+|+
T Consensus         8 ~~vP~~P~~~~~~~~~~~si~l~W~~p~--~~~i~~Y~i~y~~~~~~~~~---~~-~~~~~~~~~i~~L~p~t~Y~~~V~   81 (102)
T d1x5za1           8 TGVPGQPLNFKAEPESETSILLSWTPPR--SDTIANYELVYKDGEHGEEQ---RI-TIEPGTSYRLQGLKPNSLYYFRLA   81 (102)
T ss_dssp             SCCCCCCEEEEEECSSSSEEEEEEECCS--CCCCCEEEECBEESSSCCCB---CC-EECSSSEEEEECCCTTCEEEECEE
T ss_pred             CCCCcCCCCeEEEEccCCEEEEEEECCC--CCCccceEEEEEeCCCCceE---EE-EcCCcCEEEECCCCCCCEEEEEEE
Confidence            4678899999999989999999999875  34688999999986543321   11 122456899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecC
Q psy6638         133 AENPLGMSETGAELQASTLE  152 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~  152 (273)
                      |.|..|.|.++..+.++|.+
T Consensus        82 A~n~~G~g~~S~~v~~~T~e  101 (102)
T d1x5za1          82 ARSPQGLGASTAEISARTMQ  101 (102)
T ss_dssp             EECSSCEEEECCCEEEECCC
T ss_pred             EEcCCCEeCCCCCEEEEcCC
Confidence            99999999888888888754

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.9e-13  Score=84.35  Aligned_cols=89  Identities=19%  Similarity=0.290  Sum_probs=74.3

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ++|.++.+...+.+++.|+|++|.   +.+.+|.|+++.....+.   ...........+.+.+|.|++.|.|+|+|.|.
T Consensus         3 ~aP~n~~~~~~s~~si~l~W~~p~---~~~~~Y~i~y~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   76 (92)
T d1qg3a1           3 GAPQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKYWIQGDSES---EAHLLDSKVPSVELTNLYPYCDYEMKVCAYGA   76 (92)
T ss_dssp             CCCEEEEEEECSTTCEEEEEECCS---SCCCEEEEEEEETTSCGG---GCEEEEESSSEEEECSCCTTCEEEEEEEEECS
T ss_pred             CcCCCCEEEEccCCEEEEEEEecC---CCccceEEeeeecccccc---EEEEecCCccEEEECCCCCCcEEEEEEEEEeC
Confidence            588999999999999999999873   357899999988655322   22344556788999999999999999999999


Q ss_pred             CCCCCCCcceEEEec
Q psy6638         137 LGMSETGAELQASTL  151 (273)
Q Consensus       137 ~g~~~~s~~~~~~~~  151 (273)
                      .|.|.+|..+.++|.
T Consensus        77 ~G~g~~S~~~~~~T~   91 (92)
T d1qg3a1          77 QGEGPYSSLVSCRTH   91 (92)
T ss_dssp             SCBCCCCCCEEEECC
T ss_pred             CcCcCCCCCEEEEcC
Confidence            999999998888875

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.1e-14  Score=90.93  Aligned_cols=92  Identities=26%  Similarity=0.398  Sum_probs=70.5

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      .|.+|.++.+..   ..+++.|.|.+|..  .+|.+.+|.|+|+..+...         ...........+++.+|.+++
T Consensus        20 vP~~P~~~~~~~---~~~si~v~W~~p~~--~~g~i~~Y~i~~~~~~~~~---------~~~~~~~~~~~~~i~~L~p~t   85 (113)
T d1x5ia1          20 VPEVPSSLHVRP---LVTSIVVSWTPPEN--QNIVVRGYAIGYGIGSPHA---------QTIKVDYKQRYYTIENLDPSS   85 (113)
T ss_dssp             CCCSCSEEEEEE---ETTEEEEEEECCSC--TTBCCCEEEEEECSSCGGG---------EEEECCTTCCEEEECSCCSSC
T ss_pred             CCCCCEeeeeee---CCCEEEEEEEcccc--CCccEEEEEEEeeeccccc---------eeeeeeCCccEEEEeccccCc
Confidence            346788888865   46799999999876  4788999999998664421         112234456899999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      .|.|+|+|.|..|.|+++. ..++|.+
T Consensus        86 ~Y~~~V~A~n~~G~g~~~~-~~~~T~P  111 (113)
T d1x5ia1          86 HYVITLKAFNNVGEGIPLY-ESAVTRP  111 (113)
T ss_dssp             EECCEEEEECSSCBCCCCC-CCEECCC
T ss_pred             EEEEEEEEECCCcCCCCee-eEEEeCC
Confidence            9999999999999998654 4556543

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.2e-13  Score=84.93  Aligned_cols=87  Identities=21%  Similarity=0.263  Sum_probs=68.1

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++.+..  .+.+++.|.|++|.     +.+.+|.|+|+..++...      ..... .+.....++|.+|.|++.|.
T Consensus         4 ~P~~l~v~~--~s~~s~~l~W~~p~-----~~~~~y~v~~~~~~~~~~------~~~~~-~~~~~~~~~i~~L~p~t~Y~   69 (90)
T d1tena_           4 APSQIEVKD--VTDTTALITWFKPL-----AEIDGIELTYGIKDVPGD------RTTID-LTEDENQYSIGNLKPDTEYE   69 (90)
T ss_dssp             CCEEEEEES--CCSSCEEEEEECCS-----SCCSEEEEEEEETTCTTC------CEEEE-EETTCCEEEECSCCTTCEEE
T ss_pred             CCCCcEEEE--ecCCEEEEEEEeCc-----eEeccEEEEEEEcCCCce------eEEEE-ecCCcceeeEeeecCCCEEE
Confidence            688999988  89999999999874     357899999998765431      11222 23446899999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEc
Q psy6638         238 IVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      |+|+|+|..|.|+++ ...|.|
T Consensus        70 ~~V~a~~~~g~s~~~-~~~~~T   90 (90)
T d1tena_          70 VSLISRRGDMSSNPA-KETFTT   90 (90)
T ss_dssp             EEEEEEETTEECCCE-EEEEEC
T ss_pred             EEEEEEeCCCEeCCE-EEEEEC
Confidence            999999999998766 345554

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.5e-13  Score=84.70  Aligned_cols=88  Identities=16%  Similarity=0.263  Sum_probs=67.7

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++++..  .+.+++.|.|+++.    ++.+.+|.|+|+..++...      ..... .......++|.+|+|++.|.
T Consensus         3 pP~~l~~~~--~~~~sv~l~W~~p~----~~~~~~y~v~y~~~~~~~~------~~~~~-~~~~~~~~~i~~L~p~t~Y~   69 (91)
T d1fnfa2           3 PPTDLRFTN--IGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEED------VAELS-ISPSDNAVVLTNLLPGTEYV   69 (91)
T ss_dssp             CCEEEEEES--CCSSCEEEEEECCT----TCCCSEEEEEEEETTCTTC------CEEEE-ECTTCCEEEECSCCTTCEEE
T ss_pred             cCCceEEEE--eCCCEEEEEEEecC----CCCcceeEEEEEECCCCcc------EEEEE-eCCCceEEEEeceeCCCEEE
Confidence            678999988  89999999999885    3568899999998765432      11222 23446789999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEc
Q psy6638         238 IVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      |+|+|++..|.|++. ...++|
T Consensus        70 ~~V~a~~~~g~S~p~-~~~~~T   90 (91)
T d1fnfa2          70 VSVSSVYEQHESTPL-RGRQKT   90 (91)
T ss_dssp             EEEEEEETTEECCCE-EEEEEC
T ss_pred             EEEEEEcCCCCCCCE-EEEEEC
Confidence            999999998887644 344444

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.2e-14  Score=85.22  Aligned_cols=81  Identities=17%  Similarity=0.348  Sum_probs=64.3

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++++..  .+.+++.|+|++|.     +.+.+|.|+|+..+.....       .....+.....++|.+|.|++.|.
T Consensus         3 ~P~~l~v~~--vt~~sv~l~W~~p~-----~~~~~Y~i~~~~~~~~~~~-------~~~~v~~~~~~~~i~~L~p~t~Y~   68 (89)
T d1fnfa3           3 SPTGIDFSD--ITANSFTVHWIAPR-----ATITGYRIRHHPEHFSGRP-------REDRVPHSRNSITLTNLTPGTEYV   68 (89)
T ss_dssp             CCEEEEEES--CCSSEEEEEEECCS-----SCCSEEEEEEECSCCSSCC-------EEEEEETTCCEEEEESCCTTCEEE
T ss_pred             cCcCCEEEE--ecCCEEEEEEEeCC-----CEEeeEEEEEEECCCCCce-------EEEEECCCccEEEECCCcccCEEE
Confidence            678999998  99999999999975     3578999999976544311       112223446789999999999999


Q ss_pred             EEEEEecCCCcCCCC
Q psy6638         238 IVVRGYNSVGKGPFS  252 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s  252 (273)
                      |+|+|+|..|.|++.
T Consensus        69 ~~V~a~~~~g~s~p~   83 (89)
T d1fnfa3          69 VSIVALNGREESPLL   83 (89)
T ss_dssp             EEEEEEETTEECCCE
T ss_pred             EEEEEEcCCcCcCCE
Confidence            999999999987654

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=3.5e-13  Score=83.17  Aligned_cols=90  Identities=19%  Similarity=0.328  Sum_probs=75.0

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCC-CCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPY-SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      +|..|.++++...+.+++.|+|.++. ...+.+..|.+++...+..+.       .....+++.|.+|.|++.|.|+|+|
T Consensus         2 ~p~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~~~-------~~~~~t~~~i~~L~p~t~Y~~rV~A   74 (94)
T d1x5aa1           2 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWH-------QMVLEPRVLLTKLQPDTTYIVRVRT   74 (94)
T ss_dssp             CCCCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCEEE-------EEESSSEEEEESCCSSCEEEEEEEE
T ss_pred             cCCCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCceEE-------EeeccCEEEECCCCCCCEEEEEEEE
Confidence            67889999999999999999999874 345567799999987654322       1124578999999999999999999


Q ss_pred             eCCCCCCCCCcceEEEec
Q psy6638         134 ENPLGMSETGAELQASTL  151 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~  151 (273)
                      .|..|.|.++..+.+.|.
T Consensus        75 ~n~~G~g~~S~~~~~~T~   92 (94)
T d1x5aa1          75 LTPLGPGPFSPDHEFRTS   92 (94)
T ss_dssp             ECSSSCCCCCCCEEEECC
T ss_pred             EcCCcCcCCCCCEEEEeC
Confidence            999999999999888884

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=3e-13  Score=85.02  Aligned_cols=97  Identities=20%  Similarity=0.259  Sum_probs=78.7

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCC--CCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAP--YSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~--~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      |+.+|.++.+...+.+.+.|+|..+  ...++.+.+|.|.++.....................+.+.+|.+++.|.|+|+
T Consensus         1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~   80 (101)
T d1x4ya1           1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQ   80 (101)
T ss_dssp             CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEE
Confidence            4678999999999999999999864  34667899999999976542221223334556678899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEec
Q psy6638         133 AENPLGMSETGAELQASTL  151 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~  151 (273)
                      |.|..|.|.+|..+.++|.
T Consensus        81 a~n~~G~s~~S~~~~~~T~   99 (101)
T d1x4ya1          81 CFNEGGESEFSNVMICETK   99 (101)
T ss_dssp             EECTTCCCCCCCCEEEECC
T ss_pred             EEcCCCCCCCCCcEEEEcc
Confidence            9999999999998888875

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.4e-13  Score=84.02  Aligned_cols=86  Identities=22%  Similarity=0.338  Sum_probs=68.4

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++.+..  .+.+++.|+|++|.     +.+.+|.|.|+..++..        .... .+....+++|.+|.|++.|.
T Consensus         4 ~P~~l~~~~--~~~~sv~l~W~~p~-----~~~~~Y~v~~~~~~~~~--------~~~~-~~~~~~~~~i~~L~p~t~Y~   67 (93)
T d2cuma1           4 APRDLEAKE--VTPRTALLTWTEPP-----VRPAGYLLSFHTPGGQT--------QEIL-LPGGITSHQLLGLFPSTSYN   67 (93)
T ss_dssp             CCEEEEEES--CCSSCEEEEEECCS-----SCCSEEEEEEECTTSCE--------EEEE-ECSSCSEEEECSCCTTCEEE
T ss_pred             cCCCCEEEE--eCCCEEEEEEEccc-----cccccEEEEEEcccccc--------EEEE-ECCCccEEEEeCccCCCEEE
Confidence            678999988  89999999999975     35789999998865431        2222 23446899999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEcC
Q psy6638         238 IVVRGYNSVGKGPFSEPFIARTN  260 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t~  260 (273)
                      |+|+|++..|.|+++. ..|.|.
T Consensus        68 ~~V~a~~~~g~s~~~~-~~~tT~   89 (93)
T d2cuma1          68 ARLQAMWGQSLLPPVS-TSFTTG   89 (93)
T ss_dssp             EEEEEEBTTBCCCCEE-EEEECC
T ss_pred             EEEEEEeCCCCCCCEE-EEEEeC
Confidence            9999999999988763 566664

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.3e-13  Score=85.28  Aligned_cols=85  Identities=14%  Similarity=0.213  Sum_probs=63.6

Q ss_pred             CCCCCeeEEecCCccC-CceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         155 PNGAPREVTSDPGVVD-PTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~-~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      |..||.++++..  .. .+.+.|+|++|..    +.+.+|+|+|+..++....      ......+.....++|.+|.|+
T Consensus         1 P~~PP~~l~v~~--~~~ts~i~v~W~~p~~----~~i~~Y~v~y~~~~~~~~~------~~~~~~~~~~~~~~i~~L~p~   68 (94)
T d1fnfa1           1 PLSPPTNLHLEA--NPDTGVLTVSWERSTT----PDITGYRITTTPTNGQQGN------SLEEVVHADQSSCTFDNLSPG   68 (94)
T ss_dssp             CCCCCEEEEEEE--CSSSSCEEEEEECCSC----SSCCEEEEEEEETTTCSSC------CEEEEECTTCCEEECCCCCTT
T ss_pred             CCCcCcCcEEEE--ecCCCEEEEEeeCCCC----CCeeEEEEEEEEecccCce------EEEEEeCCCccEEEECCCCCC
Confidence            446889999876  55 4569999999853    3488999999987654321      111223444679999999999


Q ss_pred             ceEEEEEEEecCCCcCCC
Q psy6638         234 TKYAIVVRGYNSVGKGPF  251 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~  251 (273)
                      +.|.|+|.|++..|.|.+
T Consensus        69 t~Y~v~V~a~~~~g~s~p   86 (94)
T d1fnfa1          69 LEYNVSVYTVKDDKESVP   86 (94)
T ss_dssp             SCEEEEEEEEETTEECCC
T ss_pred             CEEEEEEEEEcCCCEeCC
Confidence            999999999999887754

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.6e-13  Score=84.20  Aligned_cols=87  Identities=21%  Similarity=0.290  Sum_probs=68.3

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .||.++++..  .+.+++.|+|++|.     +.+.+|.|+|+..++..        ............+.|.+|+|++.|
T Consensus         3 spP~~l~v~~--~~~~si~v~W~~p~-----~~~~~Y~i~~~~~~~~~--------~~~~~~~~~~~~~~i~~L~p~t~Y   67 (90)
T d1fnha2           3 SPPRRARVTD--ATETTITISWRTKT-----ETITGFQVDAVPANGQT--------PIQRTIKPDVRSYTITGLQPGTDY   67 (90)
T ss_dssp             CCCEEEEEEE--ECSSEEEEEEECCS-----SCCCCEEEEEEESSSSC--------CEEEECCTTCSEEEEESCCTTCEE
T ss_pred             CcCCCCEEEE--ecCCEEEEEEECCC-----CCCceeEEEEEEccCCc--------eEEEecCCCccEEEeCCCCCCcEE
Confidence            3788999988  89999999999874     35789999999876532        112223445689999999999999


Q ss_pred             EEEEEEecCCCcCCCCccEEEEc
Q psy6638         237 AIVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      .|+|+|.|..|.|++. .+.++|
T Consensus        68 ~~~V~a~~~~g~s~p~-~~~~~T   89 (90)
T d1fnha2          68 KIYLYTLNDNARSSPV-VIDAST   89 (90)
T ss_dssp             EEEEEEEETTEECCCE-EEEEEC
T ss_pred             EEEEEEEeCCCCcCCE-EEEEEC
Confidence            9999999999988754 355554

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.9e-14  Score=88.26  Aligned_cols=96  Identities=27%  Similarity=0.407  Sum_probs=71.9

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      .|++|....+ .....++.|.|.+|.. ++.++.+|.|+|+..+. .|...............+.+.+|.+++.|.|+|+
T Consensus         2 vP~~P~~~~~-~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~   80 (101)
T d2haza1           2 TPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLA   80 (101)
T ss_dssp             CCCCCEEEEE-EECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEE
T ss_pred             cCcCCccCEE-EeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEEE
Confidence            5888875544 4567889999998864 44579999999998654 3331111111122346789999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEec
Q psy6638         133 AENPLGMSETGAELQASTL  151 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~  151 (273)
                      |.|..|.|.++....+.|.
T Consensus        81 A~N~~G~g~~S~~~~~~T~   99 (101)
T d2haza1          81 ALNGKGLGEISAASEFKTQ   99 (101)
T ss_dssp             EEETTEECCCCCCEEEECC
T ss_pred             EEeCCcCcCCCCceeEEeC
Confidence            9999999999998888874

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.50  E-value=1.6e-13  Score=83.86  Aligned_cols=80  Identities=14%  Similarity=0.288  Sum_probs=64.5

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++++..  .+.+++.|.|+++.     +.+.+|.|+|+..+....       .... .......+++.+|.|++.|.
T Consensus         3 ~P~~l~v~~--v~~~s~~l~W~~~~-----~~~~~Y~i~~~~~~~~~~-------~~~~-~~~~~~~~~i~~L~p~t~Y~   67 (88)
T d1qr4a2           3 SPKGISFSD--ITENSATVSWTPPR-----SRVDSYRVSYVPITGGTP-------NVVT-VDGSKTRTKLVKLVPGVDYN   67 (88)
T ss_dssp             CCSCEEEES--CCSSCEEEEECCCS-----SCCSEEEEEEEETTCCCC-------EEEE-EETTCCEEEECSCCSSCEEE
T ss_pred             CCcceEEEE--ecCCEEEEEEEccc-----EeeceEEEEEEeccCCce-------EEEE-ecCCccEEEECCCCCCCEEE
Confidence            677899988  89999999999974     457899999998765431       1222 23345799999999999999


Q ss_pred             EEEEEecCCCcCCCC
Q psy6638         238 IVVRGYNSVGKGPFS  252 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s  252 (273)
                      |+|.|+|..|.|++.
T Consensus        68 ~~V~a~~~~g~s~p~   82 (88)
T d1qr4a2          68 VNIISVKGFEESEPI   82 (88)
T ss_dssp             EEEEEEETTEECCCE
T ss_pred             EEEEEEeCCCCcCCE
Confidence            999999999988764

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.49  E-value=2.8e-13  Score=82.58  Aligned_cols=85  Identities=20%  Similarity=0.305  Sum_probs=67.6

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++++..  .+.+++.|.|++|.+     .+.+|.|+|+..+...        .... .+.....++|.+|.|++.|.
T Consensus         2 aP~~l~v~~--~t~~sv~v~W~~p~~-----~~~~Y~v~~~~~~~~~--------~~~~-~~~~~~~~~~~~L~p~t~Y~   65 (87)
T d1qr4a1           2 NPKDLEVSD--PTETTLSLRWRRPVA-----KFDRYRLTYVSPSGKK--------NEME-IPVDSTSFILRGLDAGTEYT   65 (87)
T ss_dssp             CCEEEEEES--CCSSEEEEEEECCSS-----CCSEEEEEEECTTCCE--------EEEE-ECTTCSEEEEESCCSSCEEE
T ss_pred             cCcCcEEEE--ecCCEEEEEEECCCC-----CcceeEEEeecCCcce--------eEEe-CCCCcCEEEECCCCcCCEEE
Confidence            578999988  899999999999853     4789999998766432        1222 23446899999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEc
Q psy6638         238 IVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      |+|+|++..|.|+++ .+.+.|
T Consensus        66 v~V~a~~~~~~s~~~-~~~~~T   86 (87)
T d1qr4a1          66 ISLVAEKGRHKSKPT-TIKGST   86 (87)
T ss_dssp             EEEEEESSSCBCCCE-EEEEEC
T ss_pred             EEEEEEcCCCCccCE-EEEEEc
Confidence            999999999998766 456665

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.7e-14  Score=92.90  Aligned_cols=102  Identities=19%  Similarity=0.258  Sum_probs=73.6

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      .+|.+|.++.+..++.+++.|.|++|.. +...+..|.++|+...................+.+.+.+|.+++.|.|+|+
T Consensus        14 ~pp~~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~   93 (120)
T d1wfua_          14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLK   93 (120)
T ss_dssp             CCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEEEEE
T ss_pred             cCCCcCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeeccccccEEeCCCCCCCcEeeEEEE
Confidence            4677777777888889999999998764 334566666666532111010111223344567899999999999999999


Q ss_pred             EeCCCCCCCCCcceEEEecCCCC
Q psy6638         133 AENPLGMSETGAELQASTLEEAP  155 (273)
Q Consensus       133 a~~~~g~~~~s~~~~~~~~~~~p  155 (273)
                      |.|..|.|.++..+.+.+....|
T Consensus        94 A~n~~G~s~~S~~~~~~T~~~~p  116 (120)
T d1wfua_          94 VTSPSGEYEYSPVVSVATTRESG  116 (120)
T ss_dssp             EECSSSCEEECCCEEEECCCCCC
T ss_pred             EEeCCcEeCCCCCEEEEeCCCCc
Confidence            99999999999989888866544

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1e-13  Score=88.89  Aligned_cols=92  Identities=22%  Similarity=0.328  Sum_probs=73.6

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCC--ccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPT--QPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..|++|.++++...+.+++.|+|.++.++++++..|.++++.... .+..  ...........+.+.+.+|.+++.|.|+
T Consensus         9 ~~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~fr   88 (111)
T d1wisa1           9 ELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFR   88 (111)
T ss_dssp             CCCCCCEEEEEESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECCC
T ss_pred             CCCcCCCCCEEEEcCCCEEEEEEeCCCCCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEEEEE
Confidence            568899999998889999999999988888899999999987543 2221  1122334456678999999999999999


Q ss_pred             EEEeCCCCCCCCCcc
Q psy6638         131 LLAENPLGMSETGAE  145 (273)
Q Consensus       131 v~a~~~~g~~~~s~~  145 (273)
                      |+|.|..|.|.+|.+
T Consensus        89 V~A~N~~G~s~~S~~  103 (111)
T d1wisa1          89 MRQVNIVGTSPPSQP  103 (111)
T ss_dssp             CEEECSSCBCCCCCC
T ss_pred             EEEEcCCcCCCCcCC
Confidence            999999999988764

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.7e-13  Score=87.25  Aligned_cols=99  Identities=20%  Similarity=0.268  Sum_probs=71.6

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCc----cceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCC
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESW----NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL  230 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~----~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  230 (273)
                      .|.+|.++.+..   +.+.+.|+|++|.....    +..+..|.|+|+..+.......      ..........+.+.+|
T Consensus         5 kP~pP~nl~v~~---~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~L   75 (114)
T d2gysa2           5 QPPEPRDLQIST---DQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAA------ILLSNTSQATLGPEHL   75 (114)
T ss_dssp             CCCCCEEEEEEE---ETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCE------EEEESSSEEEECTTTC
T ss_pred             cCCcCCCeEEEE---eCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEE------EeeccCceEEEEeCCC
Confidence            346899999854   66799999999965321    2345689999998776432211      1112233568899999


Q ss_pred             CccceEEEEEEEecCCCc------CCCCccEEEEcCCC
Q psy6638         231 TPYTKYAIVVRGYNSVGK------GPFSEPFIARTNEG  262 (273)
Q Consensus       231 ~p~~~Y~~~v~a~n~~g~------~~~s~~~~~~t~~~  262 (273)
                      .|++.|.|+|+|.|..|.      |+||+.+.+.|+++
T Consensus        76 ~p~t~Y~~rVRa~~~~g~~~~g~wS~WS~~v~~~t~pg  113 (114)
T d2gysa2          76 MPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPG  113 (114)
T ss_dssp             CTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCC
T ss_pred             CCCcEEEEEEEEEeCCCCCCCCCccCCcCCEeeeCcCC
Confidence            999999999999998875      57788899999875

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.5e-14  Score=89.53  Aligned_cols=95  Identities=18%  Similarity=0.318  Sum_probs=77.4

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      .|.||+++.+. ....++.|+|++|...++++.+|.++++.....|...  ........+.+.+.+|.+++.|.|+|+|.
T Consensus         7 ~~sPP~~~~~~-~t~~si~l~W~pp~~~~~~i~~Y~v~~~~~~~~~~~~--~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~   83 (108)
T d1v5ja_           7 GLSPPRGLVAV-RTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVL--DPAVAGTETELLVPGLIKDVLYEFRLVAF   83 (108)
T ss_dssp             CCCCCEEEEEE-ECSSSEEEEEECCSCCSSCCCBEEEEEEETTCCCEEE--EEEECSSCCEEECCCCCTTSCEECCBEEE
T ss_pred             CCCcCCCeEEE-EcCCEEEEEEEecccCCCceeEEEEEeeeeeeeeeec--cccccceeeeEEEEeccCCcEEEEEEEEE
Confidence            46789998764 4678899999998777778999999999887776522  22345567889999999999999999999


Q ss_pred             CCCCCCCCCcceEEEecC
Q psy6638         135 NPLGMSETGAELQASTLE  152 (273)
Q Consensus       135 ~~~g~~~~s~~~~~~~~~  152 (273)
                      |..|.|.++..+.+.+..
T Consensus        84 n~~g~s~~S~~~~~~T~~  101 (108)
T d1v5ja_          84 AGSFVSDPSNTANVSTSG  101 (108)
T ss_dssp             ETTEEEEECSCCCCCCSS
T ss_pred             eCCCEeCCcCceEEECCC
Confidence            999999888877777644

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.3e-13  Score=83.58  Aligned_cols=88  Identities=23%  Similarity=0.289  Sum_probs=69.0

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++.+..  .+.+++.|.|++|..     .+.+|.++|.........      ... .......+++|.+|.|++.|.
T Consensus         2 pP~~l~~~~--v~~~si~l~W~~p~~-----~~~~~~i~~~~~~~~~~~------~~~-~~~~~~~~~~i~~L~p~t~Y~   67 (90)
T d1fnha1           2 APTDLKFTQ--VTPTSLSAQWTPPNV-----QLTGYRVRVTPKEKTGPM------KEI-NLAPDSSSVVVSGLMVATKYE   67 (90)
T ss_dssp             CCEEEEEEE--ECSSCEEEEEECCSS-----CCSEEEEEEEESSSCSCC------CEE-EECTTCCEEEECSCCTTCEEE
T ss_pred             CCCCEEEEE--ecCCEEEEEEEccce-----eccceEEEEEeeeCCCce------EEE-EeCCCCeEEEEecccCceEEE
Confidence            678999988  999999999999753     467899999887654321      112 233446789999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEcC
Q psy6638         238 IVVRGYNSVGKGPFSEPFIARTN  260 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t~  260 (273)
                      |+|+|+|..|.|+++. ..+.|.
T Consensus        68 ~~V~a~n~~g~s~~~~-~~~~T~   89 (90)
T d1fnha1          68 VSVYALKDTLTSRPAQ-GVVTTL   89 (90)
T ss_dssp             EEEEEEETTEECCCEE-EEEECC
T ss_pred             EEEEEEeCCCCcCCEe-EEEEcC
Confidence            9999999999998874 556664

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.2e-13  Score=86.25  Aligned_cols=96  Identities=18%  Similarity=0.268  Sum_probs=68.8

Q ss_pred             CCCeeEEecCCc----cCCceEEEEEeCCCCCC--ccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCC
Q psy6638         157 GAPREVTSDPGV----VDPTELLIKWKAPPRES--WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGL  230 (273)
Q Consensus       157 ~~p~~~~~~~~~----~~~~~i~l~W~~~~~~~--~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L  230 (273)
                      .||.++.+....    ....++.|+|++|....  .+..+..|+|+|+..++..       +...  .......++|.+|
T Consensus         2 dPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~-------w~~~--~~~~~~~~~i~~L   72 (106)
T d1axib2           2 DPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETK-------WKMM--DPILTTSVPVYSL   72 (106)
T ss_dssp             CCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSS-------CEEC--CCBSSSEEEEEEE
T ss_pred             cCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCcc-------ceee--eecccceEEECCC
Confidence            478887764200    12457999999986532  1235679999999887653       2222  2233578999999


Q ss_pred             CccceEEEEEEEecCCC--cCCCCccEEEEcCC
Q psy6638         231 TPYTKYAIVVRGYNSVG--KGPFSEPFIARTNE  261 (273)
Q Consensus       231 ~p~~~Y~~~v~a~n~~g--~~~~s~~~~~~t~~  261 (273)
                      .+++.|.|+|+|.+..|  .|+||+.+.+++++
T Consensus        73 ~~~t~Y~frVRa~~~~~g~ws~wS~~v~v~~P~  105 (106)
T d1axib2          73 KVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLPQ  105 (106)
T ss_dssp             ETTSCEEEEEEEEETTSSCCCCCCCCEEECCCC
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCCCEEEECCC
Confidence            99999999999998654  48999999888865

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.5e-14  Score=86.66  Aligned_cols=91  Identities=9%  Similarity=0.092  Sum_probs=70.4

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .||.+|.++++..  .+..++.|.|.++.+   ++...+|.|.|+..++..       +............+.+.+|.++
T Consensus         2 ~PP~~P~n~~~~~--~~~~si~~~W~p~~~---~~~~~~y~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~L~~~   69 (95)
T d1bqua1           2 LPPEKPKNLSCIV--NEGKKMRCEWDGGRE---THLETNFTLKSEWATHKF-------ADCKAKRDTPTSCTVDYSTVYF   69 (95)
T ss_dssp             CCCCCCEEEEEEE--ETTSCCEEEEECCSC---CSSCCEEEEEEEETTEEC-------CCEECCSSCTTEEECSSCCCTT
T ss_pred             cCcCCCeeeEEEE--ccCCEEEEEEeCccc---CCCceEEEEEEEEcccce-------eEeecccccceeeeeeeecCCC
Confidence            4678999999988  889999999999876   445679999999875432       1122223444567888899999


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEE
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIA  257 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~  257 (273)
                      +.|.|+|.|.|..|.+. |..+.+
T Consensus        70 ~~Y~f~V~A~N~~G~s~-S~~v~~   92 (95)
T d1bqua1          70 VNIEVWVEAENALGKVT-SDHINF   92 (95)
T ss_dssp             SCEEEEEEEEETTEEEE-CCCEEE
T ss_pred             cEEEEEEEEEeCCcccc-CCCeec
Confidence            99999999999999886 555544

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.9e-13  Score=85.42  Aligned_cols=91  Identities=21%  Similarity=0.273  Sum_probs=73.3

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCc---cceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQ---PLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..|++|.++++...+.+++.|+|++|...++++.+|.|+++.........   ............+.+.+|++++.|.|+
T Consensus         1 d~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   80 (103)
T d1qg3a2           1 EVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT   80 (103)
T ss_dssp             CCCCCCCCCEEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEEE
T ss_pred             CcCccCCCcEEEEecCCEEEEEEEECccCCCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEEE
Confidence            36899999999999999999999999888889999999998754321111   112233456678999999999999999


Q ss_pred             EEEeCCCCCCCCCc
Q psy6638         131 LLAENPLGMSETGA  144 (273)
Q Consensus       131 v~a~~~~g~~~~s~  144 (273)
                      |+|.|..|.|.++.
T Consensus        81 V~A~n~~G~g~~s~   94 (103)
T d1qg3a2          81 VKARNGAGWGPERE   94 (103)
T ss_dssp             EEEEETTEECCCEE
T ss_pred             EEEEcCCccCCCcc
Confidence            99999999887665

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.1e-14  Score=85.77  Aligned_cols=80  Identities=26%  Similarity=0.400  Sum_probs=63.1

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++++..  .+.+++.|+|++|.     +.+.+|.|+|+..++..       .............++|.+|.|++.|.
T Consensus         3 aP~nl~v~~--~~~~s~~l~W~~p~-----~~i~~Y~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~L~p~t~Y~   68 (89)
T d1fnha3           3 APSNLRFLA--TTPNSLLVSWQPPR-----ARITGYIIKYEKPGSPP-------REVVPRPRPGVTEATITGLEPGTEYT   68 (89)
T ss_dssp             CCEEEEEEE--EETTEEEEEEECCS-----SCCSEEEEEEECTTSCC-------EECTTCCCTTCCEEEEESCCTTCEEE
T ss_pred             cCcCCEEEE--ecCCEEEEEEeCCC-----cCCceEEEEEeeccCCc-------cEEEEEcCCCccEEEEEeeeCCCEEE
Confidence            578999988  89999999999974     45789999999866542       11122234446789999999999999


Q ss_pred             EEEEEecCCCcCCC
Q psy6638         238 IVVRGYNSVGKGPF  251 (273)
Q Consensus       238 ~~v~a~n~~g~~~~  251 (273)
                      |+|+|+|..|.|++
T Consensus        69 ~~V~a~n~~g~S~p   82 (89)
T d1fnha3          69 IYVIALKNNQKSEP   82 (89)
T ss_dssp             EEEEEESSSCEEEE
T ss_pred             EEEEEEcCCCEeCC
Confidence            99999999887754

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.1e-13  Score=85.76  Aligned_cols=91  Identities=18%  Similarity=0.137  Sum_probs=57.9

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCC-ccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRES-WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~-~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      .+|.++++..  ...+++.|.|.+|.... .......|.|+|+..+.....    ... ..........+.+.+|.|++.
T Consensus         3 ~~P~~l~v~~--~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~----~~~-~~~~~~~~~~~~i~~L~p~t~   75 (101)
T d1iarb2           3 RAPGNLTVHT--NVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADF----RIY-NVTYLEPSLRIAASTLKSGIS   75 (101)
T ss_dssp             CCCEEEEEC------CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCE----EEE-EECSSCCEEEECC-----CCC
T ss_pred             ccCCcCEEEE--EeCCeEEEEEccccCCCCccceeeEEEEeeecccceeee----eee-eeccCccceEEEECCCCCCCE
Confidence            5888999988  88999999999886532 122445799999987654321    111 112233346789999999999


Q ss_pred             EEEEEEEecCCCcCCCCcc
Q psy6638         236 YAIVVRGYNSVGKGPFSEP  254 (273)
Q Consensus       236 Y~~~v~a~n~~g~~~~s~~  254 (273)
                      |.|+|+|.|..|.|++|++
T Consensus        76 Y~~rVrA~~~~g~g~wSew   94 (101)
T d1iarb2          76 YRARVRAWAQAYNTTWSEW   94 (101)
T ss_dssp             EEEEEEEECGGGTCCCCCC
T ss_pred             EEEEEEEEcCCCCCCCcCC
Confidence            9999999999998776654

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.1e-13  Score=84.87  Aligned_cols=95  Identities=21%  Similarity=0.394  Sum_probs=72.7

Q ss_pred             ecCCCCCcceEE-EEeeccEEEEEEeCCCC-CCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          53 QETPEAPKNIRI-TEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        53 ~~~P~~p~~~~~-~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..+|++|.++.. .....+++.|+|.+|.. ++.++..|.++++.......   .........+.+.+.+|.+++.|.|+
T Consensus         8 ~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~r   84 (107)
T d2crma1           8 PDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNK---WEMIYSGATREHLCDRLNPGCFYRLR   84 (107)
T ss_dssp             CCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCC---CEEEECSSCSEEEECSCCTTSCEEEE
T ss_pred             CCCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCc---EEEeecCCccEEEEeccCCCCEEEEE
Confidence            356777777544 45678999999998764 44578899999987653211   12344456788999999999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEe
Q psy6638         131 LLAENPLGMSETGAELQAST  150 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~  150 (273)
                      |+|.|..|.|.++..+.+++
T Consensus        85 V~A~n~~G~s~~S~~v~v~T  104 (107)
T d2crma1          85 VYCISDGGQSAVSESLLVQT  104 (107)
T ss_dssp             EEEEETTEECCCCCCCCCCC
T ss_pred             EEEECCCcCcCCCCcEEEEC
Confidence            99999999999988776655

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.4e-13  Score=86.21  Aligned_cols=91  Identities=20%  Similarity=0.332  Sum_probs=73.7

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      ...|++|.++.+...+.+++.|+|.+|...++.+.+|.|+|+..+....  ..........+.+.+.+|.|++.|.|+|+
T Consensus         8 e~vP~~p~~l~~~~~~~~sv~l~W~~P~~~ng~i~~Y~i~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   85 (106)
T d1wfna1           8 EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNT--RVTHYLPNVTLEYRVTGLTALTTYTIEVA   85 (106)
T ss_dssp             CCSCCCCSCCEEESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSCGGG--CCCEEECSSCCEEEEESCCTTCEEEEEEE
T ss_pred             CCCCcCCCCcEEEEecCCEEEEEEECCCCCCCcEEeEEEEEEECCCCcc--eEEEecCCCeeEEEEccCCCCCEEEEEEE
Confidence            4678899999999999999999999987777889999999988653211  11234555677899999999999999999


Q ss_pred             EeCCCCCCCCCcc
Q psy6638         133 AENPLGMSETGAE  145 (273)
Q Consensus       133 a~~~~g~~~~s~~  145 (273)
                      |.|..|.|.++..
T Consensus        86 A~n~~G~g~~s~~   98 (106)
T d1wfna1          86 AMTSKGQGQVSAS   98 (106)
T ss_dssp             EECSSCEEEEEEE
T ss_pred             EECCCCCcCCcCC
Confidence            9999998876653

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.2e-14  Score=95.67  Aligned_cols=92  Identities=23%  Similarity=0.256  Sum_probs=68.8

Q ss_pred             EecCCccCCceEEEEEeCCCCCCcc--------ceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         163 TSDPGVVDPTELLIKWKAPPRESWN--------GVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       163 ~~~~~~~~~~~i~l~W~~~~~~~~~--------~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      .+..  ++.+++.|+|.+|.... +        ..+..|.++++..+...      .+...  .......++|.+|+|++
T Consensus        25 ~V~~--v~~~sv~l~W~~P~~~~-~~~~~~~~~~~~~~y~v~~~~~~~~~------~~~~~--~~~~~~~~~i~~L~P~t   93 (137)
T d1wk0a_          25 VASD--IQARTVVLTWSPPSSLI-NGETDESSVPELYGYEVLISSTGKDG------KYKSV--YVGEETNITLNDLKPAM   93 (137)
T ss_dssp             EEES--CCSSCEEEECCCCCCCS-TTSSCSSCSCSCCEEEEEECSSCTTS------CCEEE--EEESCSEEEECSCCTTC
T ss_pred             EEEE--eEcCEEEEEEeCcCcCC-CceeeccccceEEeeEEEEeeCCCCc------cEEEE--EecCccEEEECCCCCCc
Confidence            4556  78999999999986531 1        14567888887654322      11111  12235689999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEcCCCCCc
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIARTNEGDFL  265 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~~~P~  265 (273)
                      .|.|+|+|.|..|.|++|+.+.|+|.+.+|.
T Consensus        94 ~Y~f~V~A~n~~G~g~~S~~~~~~T~~~~P~  124 (137)
T d1wk0a_          94 DYHAKVQAEYNSIKGTPSEAEIFTTLSCEPD  124 (137)
T ss_dssp             EECEEEEEEETTEECCCCCCCCEECCCSSSC
T ss_pred             EEEEEEEEEcCCcccCCCCCEEEECCCCCCC
Confidence            9999999999999999999999999877664

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-14  Score=95.21  Aligned_cols=100  Identities=20%  Similarity=0.266  Sum_probs=73.4

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCcccee----------------eeeeeEEecCCc
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS----------------YTLKSVELDNQY  221 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~----------------~~~~~~~~~~~~  221 (273)
                      +|.++.+..  .++++|.|+|++|.... ++.|.+|.|+|+...........                ............
T Consensus         4 ~plnl~~~~--~sstsv~lsW~pP~~~~-~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T d2dtge3           4 ELLKFSYIR--TSFDKILLRWEPYWPPD-FRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQN   80 (125)
T ss_dssp             CBCCCSEEE--ECSSCEEEECCCCCSSS-CCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSS
T ss_pred             CCEEEEEEE--ecCCEEEEEEeCCCccC-CCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCc
Confidence            567888888  89999999999987543 57899999999876432111000                000111123344


Q ss_pred             ccEEEcCCCCccceEEEEEEEecCCCc-----CCCCccEEEEcC
Q psy6638         222 EGELRIPGLTPYTKYAIVVRGYNSVGK-----GPFSEPFIARTN  260 (273)
Q Consensus       222 ~~~~~i~~L~p~~~Y~~~v~a~n~~g~-----~~~s~~~~~~t~  260 (273)
                      ...++|.+|+|++.|.|+|+|+|..|.     |+.|+.+.++|+
T Consensus        81 ~~~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T~  124 (125)
T d2dtge3          81 HPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD  124 (125)
T ss_dssp             CCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC
T ss_pred             cCEEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEEEcC
Confidence            678999999999999999999999995     778998988885

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.7e-13  Score=82.80  Aligned_cols=79  Identities=28%  Similarity=0.453  Sum_probs=61.3

Q ss_pred             eEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEEEEE
Q psy6638         161 EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYAIVV  240 (273)
Q Consensus       161 ~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~~~v  240 (273)
                      ++++..  .+.+++.|.|++|.     +.+.+|.|+|+..++...      ..... .+....+++|.+|.|++.|.|+|
T Consensus         2 nl~v~~--~t~~sv~l~W~~p~-----~~~~~Y~v~~~~~~~~~~------~~~~~-~~~~~t~~~l~~L~p~t~Y~~~V   67 (91)
T d1fnaa_           2 DLEVVA--ATPTSLLISWDAPA-----VTVRYYRITYGETGGNSP------VQEFT-VPGSKSTATISGLKPGVDYTITV   67 (91)
T ss_dssp             CCEEEE--ECSSCEEEECCCCS-----SCCSEEEEEEEETTCCSC------CEEEE-EETTCCEEEECSCCTTCEEEEEE
T ss_pred             CCEEEE--eCCCEEEEEEEccc-----eEecEEEEEEEcCCCCce------eEEEE-eCCCccEEEeCCCCCCCEEEEEE
Confidence            566666  88999999999874     357899999998765431      11122 23446799999999999999999


Q ss_pred             EEecCCCcCCCCc
Q psy6638         241 RGYNSVGKGPFSE  253 (273)
Q Consensus       241 ~a~n~~g~~~~s~  253 (273)
                      .|++..|.|+++.
T Consensus        68 ~a~~~~g~s~~~s   80 (91)
T d1fnaa_          68 YAVTGRGDSPASS   80 (91)
T ss_dssp             EEECTTCCSSCSC
T ss_pred             EEEeCCccCCCcC
Confidence            9999999987654

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=3e-13  Score=85.91  Aligned_cols=99  Identities=16%  Similarity=0.195  Sum_probs=69.0

Q ss_pred             CCCCCCeeEEe-cCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCc
Q psy6638         154 APNGAPREVTS-DPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTP  232 (273)
Q Consensus       154 ~p~~~p~~~~~-~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p  232 (273)
                      .||.+|.++++ ..  ...++++|+|.++.+   ++....|.+.|+..........................+++.+|++
T Consensus         3 ~PP~~P~~v~~i~~--~~~~sv~~sW~p~~d---~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~   77 (107)
T d1cd9b1           3 YPPASPSNLSCLMH--LTTNSLVCQWEPGPE---THLPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLL   77 (107)
T ss_dssp             CCCCCCEEEEEEEE--TTTTEEEEEEECCSC---CSSCCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCT
T ss_pred             CccCCCcCCEEEEe--cCCCEEEEEEcCCCC---CCCCcceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCc
Confidence            47789999984 45  578899999999876   3434678888776643222211111122222334467899999999


Q ss_pred             cceEEEEEEEecCCCcCCCCccEEEE
Q psy6638         233 YTKYAIVVRGYNSVGKGPFSEPFIAR  258 (273)
Q Consensus       233 ~~~Y~~~v~a~n~~g~~~~s~~~~~~  258 (273)
                      ++.|.|+|.|.|..|.+. |+.+.|.
T Consensus        78 ~t~Y~frV~A~N~~G~s~-S~~~~~~  102 (107)
T d1cd9b1          78 YQYMAIWVQAENMLGSSE-SPKLCLD  102 (107)
T ss_dssp             TSCEEEEEEEEETTEEEE-CCCEEEC
T ss_pred             CceEEEEEEEEeCCcccc-CCCEEcc
Confidence            999999999999999985 5566554

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=4.8e-13  Score=82.60  Aligned_cols=88  Identities=14%  Similarity=0.207  Sum_probs=69.4

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|.++.+..  .+.+++.|+|++|.     +.+.+|.|.|+..+....      .... ..+.....+++.+|.|++.|
T Consensus         5 ~~P~~l~v~~--v~~~si~v~W~~p~-----~~~~~y~i~~~~~~~~~~------~~~~-~~~~~~~~~~i~~L~p~t~Y   70 (93)
T d1tdqa1           5 DGPTQILVRD--VSDTVAFVEWTPPR-----AKVDFILLKYGLVGGEGG------KTTF-RLQPPLSQYSVQALRPGSRY   70 (93)
T ss_dssp             CCCEEEEEEE--ECSSCEEEEEECCS-----SCCSEEEEEEEESSSSCC------CEEE-EECTTCSEEEECSCCTTCEE
T ss_pred             CcCCCCEEEE--eCCCEEEEEEEccc-----cCCCceEEEEEeccCcce------eeEE-EeCCCceEEEEeCcccceEE
Confidence            3788999988  89999999999874     457899999998765432      1122 23444679999999999999


Q ss_pred             EEEEEEecCCCcCCCCccEEEEc
Q psy6638         237 AIVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      .|+|+|++..|.|+++ ...+.|
T Consensus        71 ~v~V~a~~~~g~s~~~-~~~~tT   92 (93)
T d1tdqa1          71 EVSISAVRGTNESDAS-STQFTT   92 (93)
T ss_dssp             EEEEEEEETTEECCCE-EEEEEC
T ss_pred             EEEEEEEeCCCCcCCE-EEEEEC
Confidence            9999999999999776 456665

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.6e-13  Score=82.94  Aligned_cols=85  Identities=25%  Similarity=0.359  Sum_probs=68.5

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeC
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAEN  135 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~  135 (273)
                      |++|..+ +.....+++.|+|.+|...++.+.+|.|+++..+....   .........+.+.+.+|.+++.|.|+|+|.|
T Consensus         1 P~~P~~~-~~~~~~~sv~l~W~pP~~~~g~i~~Y~i~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   76 (94)
T d2dn7a1           1 PGRPTMM-ISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARP---NTIDFGKDDQHFTVTGLHKGTTYIFRLAAKN   76 (94)
T ss_dssp             CCCCEEE-EEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTCSSC---EEEEEETTCCEEEEECCCTTCEEEEEEEEEE
T ss_pred             CCCCcEe-EEEEeCCEEEEEEeCCCCCCCceEEEEEEEEEcCCCCc---EEEEcCCCccEEEEEccCCeeEEEEEEEEEc
Confidence            6777643 56678889999999998777899999999998654322   2344556778899999999999999999999


Q ss_pred             CCCCCCCCc
Q psy6638         136 PLGMSETGA  144 (273)
Q Consensus       136 ~~g~~~~s~  144 (273)
                      ..|.|.++.
T Consensus        77 ~~G~g~~s~   85 (94)
T d2dn7a1          77 RAGLGEEFE   85 (94)
T ss_dssp             TTEEEEEEE
T ss_pred             CCcCCCCcc
Confidence            999887665

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=5.7e-13  Score=82.66  Aligned_cols=89  Identities=24%  Similarity=0.279  Sum_probs=68.8

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCC-CCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPY-SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      ++.+|.++.+...+.+++.|.|++|. ..+..+.+|.|+|+..+..... ..........+.+.|.+|+|++.|.|+|+|
T Consensus         6 P~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   84 (95)
T d2ibga1           6 PMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEY-FKATIEGAHARSFKIAPLETATMYEFKLQS   84 (95)
T ss_dssp             CCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCC-EEEEEECTTCCEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeeccee-eeeeccCCceeEEEEeeccCCeEEEEEEEE
Confidence            44578888888889999999999764 3556789999999976432110 112234456788999999999999999999


Q ss_pred             eCCCCCCCCCc
Q psy6638         134 ENPLGMSETGA  144 (273)
Q Consensus       134 ~~~~g~~~~s~  144 (273)
                      .|..|.|.+|.
T Consensus        85 ~n~~G~s~~Ss   95 (95)
T d2ibga1          85 FSAASASEFSA   95 (95)
T ss_dssp             ECSSCBCCCCC
T ss_pred             EeCCccCCCCC
Confidence            99999888763

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6e-14  Score=90.57  Aligned_cols=105  Identities=27%  Similarity=0.366  Sum_probs=76.3

Q ss_pred             cCCCCCcceEEEE--eeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          54 ETPEAPKNIRITE--ESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        54 ~~P~~p~~~~~~~--~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      .+|.+|.++.+..  ...+.+.|+|+++...++.+..|.|+|+...................+.+.|.+|.+++.|.|+|
T Consensus         3 vkP~pP~~~~v~~~~~~~~si~v~W~~p~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V   82 (115)
T d1bqua2           3 VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI   82 (115)
T ss_dssp             EECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEE
T ss_pred             eECCCCCCCEEEEeccCCCEEEEEEeeccccccceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEEE
Confidence            4688999887764  45788999999887667788999999998654322111111233456789999999999999999


Q ss_pred             EEeCCCCCCC---CCcceEEEecCCCCCCC
Q psy6638         132 LAENPLGMSE---TGAELQASTLEEAPNGA  158 (273)
Q Consensus       132 ~a~~~~g~~~---~s~~~~~~~~~~~p~~~  158 (273)
                      +|.+..|.|.   ++....+.+...+|..+
T Consensus        83 ~a~~~~G~g~~S~~S~~~~~~T~~~~P~~~  112 (115)
T d1bqua2          83 RCMKEDGKGYWSDWSEEASGITYEDRPSKE  112 (115)
T ss_dssp             EEEETTSCSCCCCCCCCEEEEECCCHHHHH
T ss_pred             EEEeCCCccCCcCCcCCEEEECCCCCCCCC
Confidence            9999988765   45566777766655433

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3.1e-13  Score=82.16  Aligned_cols=80  Identities=20%  Similarity=0.310  Sum_probs=64.0

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++++..  .+.+++.|.|++|.     +.+.+|.|+|+..++...        ... .+...+.+.|.+|.|++.|.
T Consensus         3 ~P~nl~v~~--~~~~s~~l~W~~p~-----~~~~~Y~v~~~~~~~~~~--------~~~-~~~~~~~~~~~~L~p~t~Y~   66 (86)
T d1tdqa3           3 SPRDLMVTA--SSETSISLIWTKAS-----GPIDHYRITFTPSSGISS--------EVT-VPRDRTSYTLTDLEPGAEYI   66 (86)
T ss_dssp             CCEEEEEEE--ECSSCEEEEEECCC-----SCCSEEEEEEECSSSCCE--------EEE-EESSCSEEEECCCCTTCCEE
T ss_pred             cCCCCEEEE--ecCCEEEEEEeCCC-----CCccceEEEEecccccce--------EEE-eCCCccEEEECCCccccEEE
Confidence            678999988  89999999999974     357899999987665321        111 22346799999999999999


Q ss_pred             EEEEEecCCCcCCCCc
Q psy6638         238 IVVRGYNSVGKGPFSE  253 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~  253 (273)
                      |+|+|++..|.|.++.
T Consensus        67 v~V~a~~~~~~s~p~~   82 (86)
T d1tdqa3          67 ISITAERGRQQSLEST   82 (86)
T ss_dssp             EEEEEEETTEECCCEE
T ss_pred             EEEEEEcCCCEECCEE
Confidence            9999999999887664

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.9e-13  Score=84.94  Aligned_cols=98  Identities=28%  Similarity=0.416  Sum_probs=76.0

Q ss_pred             cCC-CCCcceEEEEeeccEEEEEEeCCC--CCCccceEEEEEEEeCCCC-CCC-ccceEEecCCccEEEecCCCCCCeEE
Q psy6638          54 ETP-EAPKNIRITEESSRSLQISWTAPY--SGNTAITQYIIQYKSSEEM-WPT-QPLKIIVPGSQTSATLQPLLPATQYQ  128 (273)
Q Consensus        54 ~~P-~~p~~~~~~~~~~~~~~l~W~~~~--~~~~~~~~y~v~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~~y~  128 (273)
                      +.| .+|.++.+...+.+++.|.|.++.  ..++.+.+|.|.++..+.. +.. .............+.+.+|.|++.|.
T Consensus         6 ~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   85 (109)
T d1va9a1           6 AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYG   85 (109)
T ss_dssp             CCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEE
T ss_pred             CCCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEE
Confidence            345 589999999999999999999874  3456889999999876432 111 11122233456789999999999999


Q ss_pred             EEEEEeCCCCCCCCCcceEEEec
Q psy6638         129 VRLLAENPLGMSETGAELQASTL  151 (273)
Q Consensus       129 ~~v~a~~~~g~~~~s~~~~~~~~  151 (273)
                      |+|+|.|..|.|.++.++.++|.
T Consensus        86 ~~V~a~n~~G~g~~S~~v~~~T~  108 (109)
T d1va9a1          86 VVVQAFNRAGTGPSSSEINATTL  108 (109)
T ss_dssp             EEEEEEETTEECCCCCCEECCCC
T ss_pred             EEEEEEcCCcCCCCCCCEEEEcC
Confidence            99999999999999988887764

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.6e-13  Score=84.14  Aligned_cols=87  Identities=18%  Similarity=0.256  Sum_probs=66.8

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++++..  .+.+++.|+|++|.+     .+.+|.++|+......       ...........+.+++.+|.|++.|.
T Consensus         4 ~P~~l~v~~--vt~~sv~l~W~~p~~-----~~~~y~i~~~~~~~~~-------~~~~~~~~~~~~~~~i~~L~p~t~Y~   69 (94)
T d1j8ka_           4 RPKGLAFTD--VDVDSIKIAWESPQG-----QVSRYRVTYSSPEDGI-------HELFPAPDGEEDTAELQGLRPGSEYT   69 (94)
T ss_dssp             CCCCCEEEE--EETTEEEEECCCCSS-----CCSCEEEEEEETTTEE-------EEECCCCCSSCCEEEECSCCCCSEEE
T ss_pred             CCCCCEEEE--ecCCEEEEEEeCCCc-----cccceEEEEEeecCCC-------ceEEEecCCCccEEEECCCCCCCEEE
Confidence            567888888  899999999999753     4779999998876532       11222334456899999999999999


Q ss_pred             EEEEEecCCCcCCCCccEEEEc
Q psy6638         238 IVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      |+|.|+|..|.|.+. ...+.|
T Consensus        70 ~~V~a~~~~g~S~p~-~~~~~T   90 (94)
T d1j8ka_          70 VSVVALHDDMESQPL-IGTQST   90 (94)
T ss_dssp             EEEEECSSSCCCCCE-EEEEEC
T ss_pred             EEEEEEeCCCCcCCE-EEEEEE
Confidence            999999999988665 345555

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.5e-13  Score=82.52  Aligned_cols=95  Identities=16%  Similarity=0.178  Sum_probs=75.0

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCC----CCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYS----GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~----~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      |+.||.++.+...+.+++.|+|++|..    .......|.+.++..+....   ...........+.|.+|.|++.|.|+
T Consensus         1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~   77 (100)
T d1x5ja1           1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANT---KYKNANATTLSYLVTGLKPNTLYEFS   77 (100)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSC---CCEECCBCSSEEEEESCCTTCEECCE
T ss_pred             CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcc---eeEecCCCccEEEECCCCCCCEEEEE
Confidence            456899999999999999999997642    23456788998877654322   12334456678999999999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEecC
Q psy6638         131 LLAENPLGMSETGAELQASTLE  152 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~~  152 (273)
                      |+|.|..|.|.+|..+.++|.+
T Consensus        78 V~a~n~~g~s~~S~~~~~~T~e   99 (100)
T d1x5ja1          78 VMVTKGRRSSTWSMTAHGTTFE   99 (100)
T ss_dssp             EEEECSSCBCCCCCCCCEECCC
T ss_pred             EEEEeCCcCcCCCCeEEEEecc
Confidence            9999999999999988887753

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.44  E-value=1.2e-12  Score=79.70  Aligned_cols=86  Identities=27%  Similarity=0.439  Sum_probs=68.4

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      .+|.+|.++.+...+.+++.|+|+++.+ +..+.+|.+++...          .......+.+.+.+|.+++.|.|+|+|
T Consensus         2 ~AP~~P~~l~~~~~~~~sv~lsW~~p~~-~~~i~~Y~i~~~~~----------~~~~~~~t~~~~~~L~p~t~Y~~~V~A   70 (88)
T d1k85a_           2 MAPTAPTNLASTAQTTSSITLSWTASTD-NVGVTGYDVYNGTA----------LATTVTGTTATISGLAADTSYTFTVKA   70 (88)
T ss_dssp             CSCCCCEEEEEEEECSSCEEEEEECCSC-CSSEEEEEEEESSS----------EEEEESSSEEEECCCCSSCEEEEEEEE
T ss_pred             cCcCCCCCcEEEEecCCEEEEEEeCCCC-CCCEEEEEEEccce----------EEEecCCCEEEECCCCCCCEEEEEEEE
Confidence            4689999999999999999999998854 34578898875211          122235678999999999999999999


Q ss_pred             eCCCC-CCCCCcceEEEe
Q psy6638         134 ENPLG-MSETGAELQAST  150 (273)
Q Consensus       134 ~~~~g-~~~~s~~~~~~~  150 (273)
                      .|..| .+.++..+.++|
T Consensus        71 ~n~~G~~s~~S~~v~vtT   88 (88)
T d1k85a_          71 KDAAGNVSAASNAVSVKT   88 (88)
T ss_dssp             EETTTEECCCCCCEEEEC
T ss_pred             EECCCCcCCCCcCEEEEC
Confidence            99999 688887776654

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.8e-12  Score=81.05  Aligned_cols=95  Identities=22%  Similarity=0.353  Sum_probs=67.5

Q ss_pred             CCCCeeEEecCCcc-CCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         156 NGAPREVTSDPGVV-DPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       156 ~~~p~~~~~~~~~~-~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      +.||.++.+..  . ....+.|.|.+|.... ++.+..|.|+|+..+....      ..... .....+++.|.+|.+++
T Consensus         5 ~dPP~nl~v~~--~~~~~~l~v~W~~P~~~~-~~~~~~Y~v~y~~~~~~~~------~~~~~-~~~~~t~~~i~~L~p~t   74 (105)
T d1erna2           5 LDAPVGLVARL--ADESGHVVLRWLPPPETP-MTSHIRYEVDVSAGNGAGS------VQRVE-ILEGRTECVLSNLRGRT   74 (105)
T ss_dssp             CCCCEEEEEEE--CCC-CCEEEEEECSSSCS-CGGGEEEEEEEEEC-CCCE------EEEEE-ECTTCCEEEECSCCSSC
T ss_pred             cCCCCCCEEEE--ecCCCcEEEEeeeccccc-cceEEEEEEEEecCCCCCc------eEEEe-ecCCccEEEEeCCCCCc
Confidence            45888998765  4 4567999999986543 5677899999998765431      11222 22334789999999999


Q ss_pred             eEEEEEEEecCC----Cc-CCCCccEEEEcC
Q psy6638         235 KYAIVVRGYNSV----GK-GPFSEPFIARTN  260 (273)
Q Consensus       235 ~Y~~~v~a~n~~----g~-~~~s~~~~~~t~  260 (273)
                      .|.|+|+|.+..    |. |+||+++.+.|+
T Consensus        75 ~Y~~rVRar~~~~~~~G~WSeWS~~v~~~tP  105 (105)
T d1erna2          75 RYTFAVRARMAEPSFGGFWSAWSEPVSLLTP  105 (105)
T ss_dssp             EEEEEEEEEECSSSCCBCCCCCCCCEEEECC
T ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCEEeeCc
Confidence            999999998542    32 677888888875

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-12  Score=80.86  Aligned_cols=86  Identities=19%  Similarity=0.265  Sum_probs=64.2

Q ss_pred             CCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccce
Q psy6638         156 NGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTK  235 (273)
Q Consensus       156 ~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~  235 (273)
                      |.+|.++++..  .+.+.+.|+|++|..    +.+..|.|+|+..+...+       .....  .....+++.+|.|++.
T Consensus         3 P~~P~nl~v~~--~~~~~v~l~W~~p~~----~~~~~y~v~y~~~~~~~~-------~~~~~--~~~~~~~~~~L~p~t~   67 (95)
T d2b5ic1           3 PWAPENLTLHK--LSESQLELNWNNRFL----NHCLEHLVQYRTDWDHSW-------TEQSV--DYRHKFSLPSVDGQKR   67 (95)
T ss_dssp             CCCCEEEEEEE--EETTEEEEEEECSSC----STTCEEEEEEEETTCSSC-------EEEEE--CSSCEEEECSCCTTSC
T ss_pred             CcCCCCCEEEE--EeCCEEEEEECCCCC----ceeEEEEEEEEcCCCcee-------eEeee--cccceeEcCCCCCCCE
Confidence            35889999988  889999999998864    456799999998866432       22222  2246899999999999


Q ss_pred             EEEEEEEecCCC------cCCCCccEE
Q psy6638         236 YAIVVRGYNSVG------KGPFSEPFI  256 (273)
Q Consensus       236 Y~~~v~a~n~~g------~~~~s~~~~  256 (273)
                      |.|+|+|.+..+      .|+||+++.
T Consensus        68 Y~frVRa~~~~~~~~~g~WSeWS~pv~   94 (95)
T d2b5ic1          68 YTFRVRSRFNPLCGSAQHWSEWSHPIH   94 (95)
T ss_dssp             EEEEEEEECCSSSCCCCCCCCCCCCEE
T ss_pred             EEEEEEEeeCCCCCCCCCccCCCCcee
Confidence            999999986543      245565543

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.6e-12  Score=80.22  Aligned_cols=91  Identities=25%  Similarity=0.429  Sum_probs=69.2

Q ss_pred             CCCCCcceEEE----EeeccEEEEEEeCCCC----CCccceEEEEEEEeCCCC-CCCccceEEecCCccEEEecCCCCCC
Q psy6638          55 TPEAPKNIRIT----EESSRSLQISWTAPYS----GNTAITQYIIQYKSSEEM-WPTQPLKIIVPGSQTSATLQPLLPAT  125 (273)
Q Consensus        55 ~P~~p~~~~~~----~~~~~~~~l~W~~~~~----~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~  125 (273)
                      +|+||.++.+.    ....+.+.|+|++|..    .+..+..|+++++..+.. |.     .......+.+.+.+|.+++
T Consensus         2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~-----~~~~~~~~~~~i~~L~p~t   76 (103)
T d1f6fb2           2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWE-----IHFTGHQTQFKVFDLYPGQ   76 (103)
T ss_dssp             CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCE-----EEEEETCSEEEECCCCTTC
T ss_pred             CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCccee-----eecccceeEEEeCCCCcce
Confidence            68999988764    3356779999998853    234667999999987653 33     1223356789999999999


Q ss_pred             eEEEEEEEeCCCC-CCCCCcceEEEe
Q psy6638         126 QYQVRLLAENPLG-MSETGAELQAST  150 (273)
Q Consensus       126 ~y~~~v~a~~~~g-~~~~s~~~~~~~  150 (273)
                      .|.|+|+|.+..| +|.||....+.+
T Consensus        77 ~Y~~rVra~~~~G~wS~wS~~~~~~~  102 (103)
T d1f6fb2          77 KYLVQTRCKPDHGYWSRWSQESSVEM  102 (103)
T ss_dssp             EEEEEEEEEESSSCCCCCCCCEEEEC
T ss_pred             EEEEEEEEEeCCCCCCCCcCceeeEC
Confidence            9999999999988 488888777654

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-12  Score=85.55  Aligned_cols=102  Identities=20%  Similarity=0.229  Sum_probs=79.4

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCC--CCccceEEEEEEEeCCC-CCCC----ccceEEecCCccEEEecCCCCCCeE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYS--GNTAITQYIIQYKSSEE-MWPT----QPLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~--~~~~~~~y~v~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      ++.+|.++.+...+.+.+.|+|+++..  .++.+..|.+.+..... .+..    .............+.|.+|.|++.|
T Consensus        14 P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y   93 (125)
T d1uena_          14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHY   93 (125)
T ss_dssp             CCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCEE
T ss_pred             CCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCCCCEE
Confidence            446899999999999999999998752  45678888888876432 1111    1122344556778999999999999


Q ss_pred             EEEEEEeCCCCCCCCCcceEEEecCCCCC
Q psy6638         128 QVRLLAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      .|+|+|.|..|.+.++.++.++|.+..|+
T Consensus        94 ~~~V~A~n~~G~g~~S~~~~~~T~~~~pp  122 (125)
T d1uena_          94 TLNVRVVNGKGEGPASPDRVFNTPEGSGP  122 (125)
T ss_dssp             EEEEEEEESSCEEEECCCEEEECCCCCSS
T ss_pred             EEEEEEEeCCcccCCCCCEEEECCCCCcC
Confidence            99999999999999999999999877664

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.8e-13  Score=87.84  Aligned_cols=101  Identities=29%  Similarity=0.445  Sum_probs=79.3

Q ss_pred             cCCC-CCcceEEEEeeccEEEEEEeCCC--CCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          54 ETPE-APKNIRITEESSRSLQISWTAPY--SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        54 ~~P~-~p~~~~~~~~~~~~~~l~W~~~~--~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..|. +|.++.+...+.+++.|+|+++.  ..++.+.+|.|+|+..+....  ............+.+.+|.+++.|.|+
T Consensus         9 ~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~   86 (119)
T d1x5ha1           9 DVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSD--VTETLVSGTQLSQLIEGLDRGTEYNFR   86 (119)
T ss_dssp             SSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEE--EECCBCCTTCCEEEEECCCSSCEEEEE
T ss_pred             CCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccc--eeeeecCCCccEEEeCCCCCCCEEEEE
Confidence            4564 78999999889999999999874  355688999999987653211  011224456678999999999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEecCCCCC
Q psy6638         131 LLAENPLGMSETGAELQASTLEEAPN  156 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~~~~~p~  156 (273)
                      |+|.|..|.|.+|..+.++|.+..++
T Consensus        87 V~A~n~~G~G~~S~~~~~~T~~~~~~  112 (119)
T d1x5ha1          87 VAALTINGTGPATDWLSAETFESDLD  112 (119)
T ss_dssp             CEEEETTEEEEECCCEEEECCSSCCC
T ss_pred             EEEEcCCcCCCCCCCEEEEeCCCCCC
Confidence            99999999999999899988766553

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=5.6e-13  Score=86.89  Aligned_cols=98  Identities=18%  Similarity=0.250  Sum_probs=73.0

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCcc----ce---------EEecCCccEEEecC
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQP----LK---------IIVPGSQTSATLQP  120 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~----~~---------~~~~~~~~~~~~~~  120 (273)
                      ..|.+|.++.+.. ...++.|+|.+|...++++.+|.|+|+..........    ..         .........+.+.+
T Consensus         6 ~~P~aP~~v~v~~-~~~si~l~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   84 (123)
T d1wfta_           6 SGPGAPSTVRISK-NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHID   84 (123)
T ss_dssp             SCCCCCEEEEEEE-CSSEEEEEEECCSSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCCB
T ss_pred             CCCcCCcccEEEe-CCCEEEEEecCchhcCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEcC
Confidence            5788999998765 6788999999998878899999999987543211110    00         11122234456789


Q ss_pred             CCCCCeEEEEEEEeCCCCCCCCCcceEEEecC
Q psy6638         121 LLPATQYQVRLLAENPLGMSETGAELQASTLE  152 (273)
Q Consensus       121 l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~  152 (273)
                      |.+++.|.|+|+|.|..|.|.++....+.+..
T Consensus        85 L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t~~  116 (123)
T d1wfta_          85 YTSRPAIVFRISAKNEKGYGPATQIRWLQGNS  116 (123)
T ss_dssp             CSSSCEEEEEEEEBSSSSBCCCEEEEEECCSC
T ss_pred             CCCCCEEEEEEEEecCCcCCCCCCcEEEEecC
Confidence            99999999999999999999988877777643

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.1e-13  Score=82.99  Aligned_cols=97  Identities=20%  Similarity=0.251  Sum_probs=69.1

Q ss_pred             CCCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCcccee-eeeeeEEecCCcccEEEcCCCCc
Q psy6638         154 APNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSS-YTLKSVELDNQYEGELRIPGLTP  232 (273)
Q Consensus       154 ~p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p  232 (273)
                      +|+ +|.++++..  .+.+++.|.|+++.     +.+.+|.|+|+........... ..............+++|.+|+|
T Consensus         3 ~Pp-~~~~l~v~~--~t~~sv~v~W~pp~-----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p   74 (101)
T d2cuia1           3 SRP-RLSQLSVTD--VTTSSLRLNWEAPP-----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRS   74 (101)
T ss_dssp             CCC-CCCCCEEES--CCSSCEEEECCCCT-----TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCT
T ss_pred             Ccc-CCCCcEEEE--ECCCEEEEEEEecc-----ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCc
Confidence            344 667899988  89999999999864     4578999999876543211111 11111112233467899999999


Q ss_pred             cceEEEEEEEecCCCcCCCCccEEEEc
Q psy6638         233 YTKYAIVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       233 ~~~Y~~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      ++.|.|+|+|+|..|.|+.+ ...++|
T Consensus        75 ~t~Y~~~V~a~~~~g~g~~~-~~~~~T  100 (101)
T d2cuia1          75 GTLYSLTLYGLRGPHKADSI-QGTART  100 (101)
T ss_dssp             TCEEEEEEEEECSSSEEEEE-EEEEEC
T ss_pred             CCEEEEEEEEEeCCcEeCCe-EEEeEE
Confidence            99999999999999998765 456655

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.41  E-value=2.5e-12  Score=81.21  Aligned_cols=90  Identities=22%  Similarity=0.280  Sum_probs=71.4

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCC--CCCccceEEEEEEEeCCC--CCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPY--SGNTAITQYIIQYKSSEE--MWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~--~~~~~~~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ++.+|.++++.....+++.|+|+++.  ..++++.+|.|.|+..+.  .|.   .....+...+.+.|.+|.+++.|.|+
T Consensus         4 P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~   80 (105)
T d1cfba2           4 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWE---NNNIFDWRQNNIVIADQPTFVKYLIK   80 (105)
T ss_dssp             CSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCE---EEEECCTTCCEEEECSCCSSCEEEEE
T ss_pred             CCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeecccccee---EEEecCCCccEEEECCCCCCCEEEEE
Confidence            33589999999989999999999753  466789999999987653  222   22334556778999999999999999


Q ss_pred             EEEeCCCCCCCCCcceE
Q psy6638         131 LLAENPLGMSETGAELQ  147 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~  147 (273)
                      |+|.|..|.|.++....
T Consensus        81 V~A~N~~G~gp~S~~~v   97 (105)
T d1cfba2          81 VVAINDRGESNVAAEEV   97 (105)
T ss_dssp             EEEEETTEECSSCCCCE
T ss_pred             EEEEeCCcCCCCCCCcE
Confidence            99999999998776543

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.5e-13  Score=83.02  Aligned_cols=99  Identities=21%  Similarity=0.352  Sum_probs=75.5

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeC
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAEN  135 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~  135 (273)
                      |.+|.++.+...+.+++.|+|+++.   +.+.+|.|.|+..++..    .........+.+.+.+|.|++.|.|+|+|.+
T Consensus         1 P~~P~~l~~~~~t~~si~l~W~~p~---~~i~~Y~v~~~~~~~~~----~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~   73 (102)
T d2cuha1           1 PDGPTQLRALNLTEGFAVLHWKPPQ---NPVDTYDIQVTAPGAPP----LQAETPGSAVDYPLHDLVLHTNYTATVRGLR   73 (102)
T ss_dssp             CSSCEEEECCCCSSSCEEEEEECCS---SCCSEEEEEEECSSSCC----EEEEEETTCSEEEECSCCSSSEEEEEEEEEE
T ss_pred             CcCCCccEEEEeCCCEEEEEEEeee---ccceeeEEEEEeccccc----eeeeeeeeeeeEEEccEEeeEEEEEEEEEEe
Confidence            7789999999999999999999873   36789999998765432    2344566788999999999999999999999


Q ss_pred             CCCCCCCCcceEEEecCCCCCCCCeeEEecC
Q psy6638         136 PLGMSETGAELQASTLEEAPNGAPREVTSDP  166 (273)
Q Consensus       136 ~~g~~~~s~~~~~~~~~~~p~~~p~~~~~~~  166 (273)
                      ..|.+.+.. ..+.+...    +|.++.+..
T Consensus        74 ~~~~s~~~~-~~~~T~~~----~P~~l~~~~   99 (102)
T d2cuha1          74 GPNLTSPAS-ITFTTGLE----APRDLEAKE   99 (102)
T ss_dssp             TTEECCCEE-EEEESCCC----CTTTSSSCC
T ss_pred             CCCCcCCEE-EEEECCCC----CCCCCEeec
Confidence            888776543 55665433    444555433

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8.5e-12  Score=77.03  Aligned_cols=77  Identities=17%  Similarity=0.326  Sum_probs=61.9

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCC-CCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEM-WPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      .|.+|.++.+...+.+.+.|+|++|..  ..+..|.|+++..... |.     .......+.+.+.+|.|++.|.|+|+|
T Consensus         2 ~P~~P~nl~v~~~~~~~v~l~W~~p~~--~~~~~y~v~y~~~~~~~~~-----~~~~~~~~~~~~~~L~p~t~Y~frVRa   74 (95)
T d2b5ic1           2 IPWAPENLTLHKLSESQLELNWNNRFL--NHCLEHLVQYRTDWDHSWT-----EQSVDYRHKFSLPSVDGQKRYTFRVRS   74 (95)
T ss_dssp             ECCCCEEEEEEEEETTEEEEEEECSSC--STTCEEEEEEEETTCSSCE-----EEEECSSCEEEECSCCTTSCEEEEEEE
T ss_pred             CCcCCCCCEEEEEeCCEEEEEECCCCC--ceeEEEEEEEEcCCCceee-----EeeecccceeEcCCCCCCCEEEEEEEE
Confidence            599999999999999999999998753  3567899999987543 32     222345678999999999999999999


Q ss_pred             eCCCC
Q psy6638         134 ENPLG  138 (273)
Q Consensus       134 ~~~~g  138 (273)
                      .+..+
T Consensus        75 ~~~~~   79 (95)
T d2b5ic1          75 RFNPL   79 (95)
T ss_dssp             ECCSS
T ss_pred             eeCCC
Confidence            86543

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.1e-12  Score=79.35  Aligned_cols=92  Identities=22%  Similarity=0.301  Sum_probs=66.6

Q ss_pred             CCCCCcceEEE----EeeccEEEEEEeCCCC----CCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCe
Q psy6638          55 TPEAPKNIRIT----EESSRSLQISWTAPYS----GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQ  126 (273)
Q Consensus        55 ~P~~p~~~~~~----~~~~~~~~l~W~~~~~----~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (273)
                      +|++|.++.+.    ....+.+.|+|.+|..    ....+..|.++++..+..+.    ........+.+.+.+|.+++.
T Consensus         2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~----~~~~~~~~~~~~i~~L~p~t~   77 (104)
T d3d48r2           2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW----EIHFAGQQTEFKILSLHPGQK   77 (104)
T ss_dssp             CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSC----EEEEEETCSEEEECC--CCCE
T ss_pred             CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccce----eeeccccccEEEECCCCCCCE
Confidence            68999998775    3356779999998853    22345689998888665332    123334567889999999999


Q ss_pred             EEEEEEEeCCCCC-CCCCcceEEEe
Q psy6638         127 YQVRLLAENPLGM-SETGAELQAST  150 (273)
Q Consensus       127 y~~~v~a~~~~g~-~~~s~~~~~~~  150 (273)
                      |.|+|+|.|..|. |.||..+.+.+
T Consensus        78 Y~~rVrA~n~~G~ws~wS~~~~v~t  102 (104)
T d3d48r2          78 YLVQVRCKPDHGYWSAWSPATFIQI  102 (104)
T ss_dssp             EEEEEEEEESSSCCCCCCCCEEEEC
T ss_pred             EEEEEEEEeCCCCCCCCcCCEEEEC
Confidence            9999999999995 99999888775

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5e-13  Score=84.00  Aligned_cols=92  Identities=16%  Similarity=0.228  Sum_probs=59.5

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCc---cceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNT---AITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~---~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      +|.+|.++.+......++.|+|.+|...+.   ....|.++++..+..+...............+.+.+|.|++.|.|+|
T Consensus         1 kP~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV   80 (101)
T d1iarb2           1 KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARV   80 (101)
T ss_dssp             CCCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEE
T ss_pred             CcccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEE
Confidence            589999999999899999999998754332   34579999988765333222222233345678889999999999999


Q ss_pred             EEeCCCCCCCCCcce
Q psy6638         132 LAENPLGMSETGAEL  146 (273)
Q Consensus       132 ~a~~~~g~~~~s~~~  146 (273)
                      +|.+..|.|.+|++.
T Consensus        81 rA~~~~g~g~wSewS   95 (101)
T d1iarb2          81 RAWAQAYNTTWSEWS   95 (101)
T ss_dssp             EEECGGGTCCCCCCC
T ss_pred             EEEcCCCCCCCcCCC
Confidence            999988877666543

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.9e-12  Score=79.08  Aligned_cols=96  Identities=20%  Similarity=0.273  Sum_probs=73.7

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCC--CccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSG--NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLL  132 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~--~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~  132 (273)
                      .+.||.++++..++..++.|+|.++...  ......|.+.+......|.... ..........+.+.+|+|++.|.|+|+
T Consensus         2 rl~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~rVr   80 (104)
T d2b5ib2           2 RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAP-LLTLKQKQEWICLETLTPDTQYEFQVR   80 (104)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSC-CEEECSCCCEEEECSCCTTCEEEEEEE
T ss_pred             ccCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeee-EEecCCCcEEEEECCCCCCCEEEEEEE
Confidence            4779999999999999999999987532  2345688898887766554322 334445677899999999999999999


Q ss_pred             EeCCCCC----CCCCcceEEEec
Q psy6638         133 AENPLGM----SETGAELQASTL  151 (273)
Q Consensus       133 a~~~~g~----~~~s~~~~~~~~  151 (273)
                      |.+..|.    |.++.++.+.|.
T Consensus        81 a~~~~g~~g~wS~wS~~v~~~T~  103 (104)
T d2b5ib2          81 VKPLQGEFTTWSPWSQPLAFRTK  103 (104)
T ss_dssp             EEESCCSSCCCCCCCCCEEEECC
T ss_pred             EEECCCCCCCCCCCcCCEEEECC
Confidence            9987763    566777777763

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-12  Score=82.63  Aligned_cols=90  Identities=19%  Similarity=0.333  Sum_probs=68.8

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCC-CCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPY-SGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      .+|++|.++.+...+.+++.|+|.+|. .++..+..|.++++.... .|..   ........+.+.+.+|.+++.|.|+|
T Consensus         1 ~Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~L~p~t~Y~frV   77 (104)
T d1bpva_           1 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLK---ANFSNILENEFTVSGLTEDAAYEFRV   77 (104)
T ss_dssp             CCCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEE---CCCSCCCSSEEEECSCCSSCCEEEEE
T ss_pred             CCCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeE---EEeeccceeEEEEcCCCCCCEEEEEE
Confidence            368899999999999999999999875 445578899999988654 3321   11223356789999999999999999


Q ss_pred             EEeCCCCC-CCCCcce
Q psy6638         132 LAENPLGM-SETGAEL  146 (273)
Q Consensus       132 ~a~~~~g~-~~~s~~~  146 (273)
                      +|.|..|. +.++...
T Consensus        78 ~A~n~~G~~s~~S~~s   93 (104)
T d1bpva_          78 IAKNAAGAISPPSEPS   93 (104)
T ss_dssp             EEECTTSCEEEEEEEE
T ss_pred             EEEECCCCCCCCcCCC
Confidence            99999985 5555443

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.2e-12  Score=79.59  Aligned_cols=87  Identities=20%  Similarity=0.371  Sum_probs=68.8

Q ss_pred             CCCCCcceEEEEee--ccEEEEEEeCCC--CCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEE
Q psy6638          55 TPEAPKNIRITEES--SRSLQISWTAPY--SGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQV  129 (273)
Q Consensus        55 ~P~~p~~~~~~~~~--~~~~~l~W~~~~--~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~  129 (273)
                      +|++|.++.+..+.  ...+.|+|++|.  +....+..|.|+++.... .|.    ........+.+.+.+|.+++.|.|
T Consensus         1 kP~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~----~~~~~~~~~~~~i~~L~p~t~Y~~   76 (104)
T d1n26a3           1 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFT----TWMVKDLQHHCVIHDAWSGLRHVV   76 (104)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCE----EEECGGGCSEEEESSCCTTCCEEE
T ss_pred             CCcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCcee----eeccccceEEEEECCCCCCCEEEE
Confidence            58999999887763  467999999885  345678899999998654 343    334445667899999999999999


Q ss_pred             EEEEeCCCCCCCCCcc
Q psy6638         130 RLLAENPLGMSETGAE  145 (273)
Q Consensus       130 ~v~a~~~~g~~~~s~~  145 (273)
                      +|+|.|..|.|.+|.+
T Consensus        77 rVra~n~~g~g~wSew   92 (104)
T d1n26a3          77 QLRAQEEFGQGEWSEW   92 (104)
T ss_dssp             EEEEEETTTBSCCCCC
T ss_pred             EEEEEeCCCccCCcCC
Confidence            9999999998777664

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.3e-12  Score=82.56  Aligned_cols=91  Identities=27%  Similarity=0.350  Sum_probs=72.7

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      ..|.+|.++.+.. ..+.+.|.|.+|...++++.+|.|+|+..+..+    .........+.+.+.+|.+++.|.|+|+|
T Consensus        19 ~vP~~P~~~~~~~-~~~si~v~W~~p~~~~g~i~~Y~i~~~~~~~~~----~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   93 (113)
T d1x5ia1          19 RVPEVPSSLHVRP-LVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHA----QTIKVDYKQRYYTIENLDPSSHYVITLKA   93 (113)
T ss_dssp             SCCCSCSEEEEEE-ETTEEEEEEECCSCTTBCCCEEEEEECSSCGGG----EEEECCTTCCEEEECSCCSSCEECCEEEE
T ss_pred             CCCCCCEeeeeee-CCCEEEEEEEccccCCccEEEEEEEeeeccccc----eeeeeeCCccEEEEeccccCcEEEEEEEE
Confidence            5788999998765 467999999998877889999999998765432    23455667789999999999999999999


Q ss_pred             eCCCCCCCCCcceEEEe
Q psy6638         134 ENPLGMSETGAELQAST  150 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~  150 (273)
                      .|..|.|.+.. ..+++
T Consensus        94 ~n~~G~g~~~~-~~~~T  109 (113)
T d1x5ia1          94 FNNVGEGIPLY-ESAVT  109 (113)
T ss_dssp             ECSSCBCCCCC-CCEEC
T ss_pred             ECCCcCCCCee-eEEEe
Confidence            99999887544 33444

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.8e-12  Score=80.39  Aligned_cols=88  Identities=17%  Similarity=0.063  Sum_probs=61.1

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ..|..+.+.....+.+.|+|.++...++.+..|.|+|+......... .........+.+.+.+|.+++.|.|+|+|.|.
T Consensus         8 ~~P~~p~~~~~~~~~v~l~W~pp~~~~~~~~~y~i~y~~~~~~~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~   86 (105)
T d2d9qb2           8 TMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWA-LVGPLPLEALQYELCGLLPATAYTLQIRCIRW   86 (105)
T ss_dssp             ECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCE-EEEEECSCEEEEEECSCCSCCCEEEEEEEEEC
T ss_pred             CCCCCCEeecCCCCeEEEEEcCCCCCCceeEEEEEEEEecCCcccee-eeecccCCcceeEEecccCCeEEEEEEEEEeC
Confidence            35555667777899999999998766778889999999765322211 12234456678999999999999999999999


Q ss_pred             CCCCCCCcc
Q psy6638         137 LGMSETGAE  145 (273)
Q Consensus       137 ~g~~~~s~~  145 (273)
                      .|.|.+|.+
T Consensus        87 ~g~G~~S~w   95 (105)
T d2d9qb2          87 PLPGHWSDW   95 (105)
T ss_dssp             SSCCCCCCC
T ss_pred             CCCCCCcCC
Confidence            997655543

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=4.3e-12  Score=78.13  Aligned_cols=89  Identities=26%  Similarity=0.362  Sum_probs=67.7

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ++|.++++...+.+++.|+|.+|.   +.+.+|.|+|+...................+.+.+.+|.|++.|.|+|.|.+.
T Consensus         2 daP~~l~v~~~~~~sv~v~W~~p~---~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   78 (92)
T d1tdqa2           2 DAPKNLRVGSRTATSLDLEWDNSE---AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMN   78 (92)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEET
T ss_pred             ccCcCCEEEEecCCEEEEEEEecC---CcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEeC
Confidence            478899999999999999999873   36789999999865432212222234455678999999999999999999999


Q ss_pred             CCCCCCCcceEEE
Q psy6638         137 LGMSETGAELQAS  149 (273)
Q Consensus       137 ~g~~~~s~~~~~~  149 (273)
                      .|.|.++. +.++
T Consensus        79 ~g~s~p~~-~~~~   90 (92)
T d1tdqa2          79 SKQSIPAT-MNAR   90 (92)
T ss_dssp             TEECCCEE-EEEE
T ss_pred             CCEecCEE-EEEE
Confidence            98876542 4444

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=1.9e-12  Score=82.08  Aligned_cols=88  Identities=23%  Similarity=0.385  Sum_probs=62.4

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC--CCCCCccceE--------EecCCccEEEecCCCCCCeE
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE--EMWPTQPLKI--------IVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~y  127 (273)
                      ||..+.+...+.+++.|+|.+|.+++.++.+|.|+++..+  ..|.......        ........+.+.+|.|++.|
T Consensus         2 PP~~p~v~~~~~~sv~l~W~~P~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y   81 (107)
T d2ic2a1           2 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTY   81 (107)
T ss_dssp             CCCCCEEEECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEEE
T ss_pred             cCcCCEEEEEECCEEEEEEEeCccccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcEE
Confidence            4555567888999999999999887889999999998654  2343211111        01123457899999999999


Q ss_pred             EEEEEEeCCCCCCCCCcc
Q psy6638         128 QVRLLAENPLGMSETGAE  145 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~s~~  145 (273)
                      .|||+|.|..|.|.+|..
T Consensus        82 ~frV~A~N~~G~s~~S~~   99 (107)
T d2ic2a1          82 RFRILAVYSNNDNKESNT   99 (107)
T ss_dssp             EEEEEEEETTSCEEECCC
T ss_pred             EEEEEEEcCCCCCCCCCC
Confidence            999999999998876643

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.4e-14  Score=91.26  Aligned_cols=98  Identities=14%  Similarity=0.127  Sum_probs=75.8

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      .+|+.|.++.+.....+++.|+|.+|...++.+.+|.|+|+.....+...............+.+.+|.+++ |.|+|+|
T Consensus         3 ~~~d~P~~v~~~~~~~~sv~l~W~pP~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t-Y~~rV~A   81 (102)
T d2dtge1           3 KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRA   81 (102)
T ss_dssp             CCCCCCCCCCCCSSSSSCCCCCCCCCCSCSSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSSE-ECCCCCE
T ss_pred             CCCCCCCCCEEEEECCCEEEEEEEeCCCCcceEEEeeeEEEecCCCCceeeeeeecccceEEEEEeccceee-EEEEEEE
Confidence            467788888888888999999999988788889999999987553322111111233345668889999975 9999999


Q ss_pred             eCCCCCCCCCcceEEEecC
Q psy6638         134 ENPLGMSETGAELQASTLE  152 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~~~~  152 (273)
                      .|..|.|.+|.++.+.+.+
T Consensus        82 ~n~~G~g~~S~~v~f~~~e  100 (102)
T d2dtge1          82 TSLAGNGSWTEPTYFYVTD  100 (102)
T ss_dssp             EETTBCCCCCCCCEECCCC
T ss_pred             EcCCccCCCCCCEEEEccC
Confidence            9999999999999888754

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.34  E-value=1.2e-11  Score=75.10  Aligned_cols=80  Identities=24%  Similarity=0.439  Sum_probs=66.2

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ++|.++++...+.+++.|+|++|.   +.+.+|.|.|+.....+    .....+...+.+.+.+|.|++.|.|+|.|.+.
T Consensus         1 DaP~~l~v~~~t~~sv~v~W~~p~---~~~~~Y~v~~~~~~~~~----~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~   73 (87)
T d1qr4a1           1 DNPKDLEVSDPTETTLSLRWRRPV---AKFDRYRLTYVSPSGKK----NEMEIPVDSTSFILRGLDAGTEYTISLVAEKG   73 (87)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEECTTCCE----EEEEECTTCSEEEEESCCSSCEEEEEEEEESS
T ss_pred             CcCcCcEEEEecCCEEEEEEECCC---CCcceeEEEeecCCcce----eEEeCCCCcCEEEECCCCcCCEEEEEEEEEcC
Confidence            478999999999999999999874   35789999998765432    23456667889999999999999999999999


Q ss_pred             CCCCCCC
Q psy6638         137 LGMSETG  143 (273)
Q Consensus       137 ~g~~~~s  143 (273)
                      .|.|.+.
T Consensus        74 ~~~s~~~   80 (87)
T d1qr4a1          74 RHKSKPT   80 (87)
T ss_dssp             SCBCCCE
T ss_pred             CCCccCE
Confidence            8877654

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.8e-11  Score=77.56  Aligned_cols=96  Identities=17%  Similarity=0.377  Sum_probs=71.2

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCC------CccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSG------NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~------~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      .+|.+|.++.+. ...+.+.|+|.+|...      ...+..|.++++..+..|... .........+.+.+.+|.+++.|
T Consensus         4 vkP~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~p~t~Y   81 (114)
T d2gysa2           4 VQPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDA-AILLSNTSQATLGPEHLMPSSTY   81 (114)
T ss_dssp             BCCCCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTC-EEEEESSSEEEECTTTCCTTCEE
T ss_pred             ccCCcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEE-EEeeccCceEEEEeCCCCCCcEE
Confidence            468999999875 5678999999988532      224568999999877655422 23334445667888999999999


Q ss_pred             EEEEEEeCCCCC------CCCCcceEEEec
Q psy6638         128 QVRLLAENPLGM------SETGAELQASTL  151 (273)
Q Consensus       128 ~~~v~a~~~~g~------~~~s~~~~~~~~  151 (273)
                      .|+|+|.+..|.      |.||.++.+.+.
T Consensus        82 ~~rVRa~~~~g~~~~g~wS~WS~~v~~~t~  111 (114)
T d2gysa2          82 VARVRTRLAPGSRLSGRPSKWSPEVCWDSQ  111 (114)
T ss_dssp             EEEEEEEECTTSSCCBCCCCCCCCEEEECC
T ss_pred             EEEEEEEeCCCCCCCCCccCCcCCEeeeCc
Confidence            999999987763      577777877764

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-11  Score=75.39  Aligned_cols=83  Identities=19%  Similarity=0.310  Sum_probs=67.8

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeC
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAEN  135 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~  135 (273)
                      +++|.++.+...+.+++.|+|++|.   +.+.+|.|.|...+....  ......+...+.+.+.+|.|++.|.|+|.|.+
T Consensus         2 ld~P~~l~v~~~s~~s~~l~W~~p~---~~~~~y~v~~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   76 (90)
T d1tena_           2 LDAPSQIEVKDVTDTTALITWFKPL---AEIDGIELTYGIKDVPGD--RTTIDLTEDENQYSIGNLKPDTEYEVSLISRR   76 (90)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECCS---SCCSEEEEEEEETTCTTC--CEEEEEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCCCCCcEEEEecCCEEEEEEEeCc---eEeccEEEEEEEcCCCce--eEEEEecCCcceeeEeeecCCCEEEEEEEEEe
Confidence            5789999999999999999999873   468899999998654211  12345667788999999999999999999999


Q ss_pred             CCCCCCCC
Q psy6638         136 PLGMSETG  143 (273)
Q Consensus       136 ~~g~~~~s  143 (273)
                      ..|.+.+.
T Consensus        77 ~~g~s~~~   84 (90)
T d1tena_          77 GDMSSNPA   84 (90)
T ss_dssp             TTEECCCE
T ss_pred             CCCEeCCE
Confidence            98877654

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.5e-11  Score=75.77  Aligned_cols=84  Identities=23%  Similarity=0.340  Sum_probs=64.4

Q ss_pred             CCCCCcceEEEEeec-cEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          55 TPEAPKNIRITEESS-RSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~-~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      ++.||.++++..... +.+.|+|+++..  ..+.+|.|.|+...+... .......+...+.+.|.+|.|++.|.|+|.|
T Consensus         1 P~~PP~~l~v~~~~~ts~i~v~W~~p~~--~~i~~Y~v~y~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a   77 (94)
T d1fnfa1           1 PLSPPTNLHLEANPDTGVLTVSWERSTT--PDITGYRITTTPTNGQQG-NSLEEVVHADQSSCTFDNLSPGLEYNVSVYT   77 (94)
T ss_dssp             CCCCCEEEEEEECSSSSCEEEEEECCSC--SSCCEEEEEEEETTTCSS-CCEEEEECTTCCEEECCCCCTTSCEEEEEEE
T ss_pred             CCCcCcCcEEEEecCCCEEEEEeeCCCC--CCeeEEEEEEEEecccCc-eEEEEEeCCCccEEEECCCCCCCEEEEEEEE
Confidence            456899999988764 569999998743  348899999998654321 1233455667789999999999999999999


Q ss_pred             eCCCCCCC
Q psy6638         134 ENPLGMSE  141 (273)
Q Consensus       134 ~~~~g~~~  141 (273)
                      .+..|.|.
T Consensus        78 ~~~~g~s~   85 (94)
T d1fnfa1          78 VKDDKESV   85 (94)
T ss_dssp             EETTEECC
T ss_pred             EcCCCEeC
Confidence            99888664

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.6e-11  Score=77.51  Aligned_cols=91  Identities=24%  Similarity=0.408  Sum_probs=67.1

Q ss_pred             CCCCcceEEEEee------ccEEEEEEeCCCCC----CccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCC
Q psy6638          56 PEAPKNIRITEES------SRSLQISWTAPYSG----NTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPA  124 (273)
Q Consensus        56 P~~p~~~~~~~~~------~~~~~l~W~~~~~~----~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~  124 (273)
                      |+||.++.+....      ...+.|+|.+|...    ...+..|+|+|+..+. .|.     .......+.+.+.+|.++
T Consensus         1 PdPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~-----~~~~~~~~~~~i~~L~~~   75 (106)
T d1axib2           1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWK-----MMDPILTTSVPVYSLKVD   75 (106)
T ss_dssp             CCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCE-----ECCCBSSSEEEEEEEETT
T ss_pred             CcCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccce-----eeeecccceEEECCCCCC
Confidence            7899988775332      34799999988532    2256789999998653 444     223345678999999999


Q ss_pred             CeEEEEEEEeCCCC--CCCCCcceEEEec
Q psy6638         125 TQYQVRLLAENPLG--MSETGAELQASTL  151 (273)
Q Consensus       125 ~~y~~~v~a~~~~g--~~~~s~~~~~~~~  151 (273)
                      +.|.|+|+|.+..|  +|.||..+.+++.
T Consensus        76 t~Y~frVRa~~~~~g~ws~wS~~v~v~~P  104 (106)
T d1axib2          76 KEYEVRVRSKQRNSGNYGEFSEVLYVTLP  104 (106)
T ss_dssp             SCEEEEEEEEETTSSCCCCCCCCEEECCC
T ss_pred             CEEEEEEEEEECCCCCCCCCCCCEEEECC
Confidence            99999999987554  5888887777653

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-11  Score=76.68  Aligned_cols=84  Identities=20%  Similarity=0.289  Sum_probs=67.1

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      .| +|.++++...+.+++.|+|.++.  +..+.+|.|+++..+....  ......+...+.+.+.+|.|++.|.|+|.|.
T Consensus         6 vp-~P~~l~v~~~t~~si~l~W~~p~--~~~i~~Y~v~~~~~~~~~~--~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~   80 (95)
T d2fnba_           6 VP-QLTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAGEGIP--IFEDFVDSSVGYYTVTGLEPGIDYDISVITL   80 (95)
T ss_dssp             SC-CCTTCEEECCCSSCEEEECCCCC--CSSCCEEEEEEEEETSCCE--EEEEECCSSCSEEEECCCCTTSEEEEEEEEE
T ss_pred             cC-cCCCeEEEEEcCCEEEEEEEecC--CceEEeEEEEEEEeeccce--EEEEEeCCCCeEEEEecccCCEEEEEEEEEE
Confidence            45 78899999999999999999874  3468899999988654321  1233455677899999999999999999999


Q ss_pred             CCCCCCCCC
Q psy6638         135 NPLGMSETG  143 (273)
Q Consensus       135 ~~~g~~~~s  143 (273)
                      +..|.|.++
T Consensus        81 ~~~g~s~p~   89 (95)
T d2fnba_          81 INGGESAPT   89 (95)
T ss_dssp             ETTEECCCC
T ss_pred             eCCcEeCCE
Confidence            998877654

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=1.1e-11  Score=75.05  Aligned_cols=80  Identities=28%  Similarity=0.472  Sum_probs=65.9

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ++|.++++...+.+++.|+|+++.   +.+.+|.|+|+..++...    ....+...+.+.+.+|.|++.|.|+|.|.+.
T Consensus         2 ~~P~nl~v~~~~~~s~~l~W~~p~---~~~~~Y~v~~~~~~~~~~----~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~   74 (86)
T d1tdqa3           2 DSPRDLMVTASSETSISLIWTKAS---GPIDHYRITFTPSSGISS----EVTVPRDRTSYTLTDLEPGAEYIISITAERG   74 (86)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCC---SCCSEEEEEEECSSSCCE----EEEEESSCSEEEECCCCTTCCEEEEEEEEET
T ss_pred             ccCCCCEEEEecCCEEEEEEeCCC---CCccceEEEEecccccce----EEEeCCCccEEEECCCccccEEEEEEEEEcC
Confidence            578899999999999999999873   368899999987654322    3445667889999999999999999999998


Q ss_pred             CCCCCCC
Q psy6638         137 LGMSETG  143 (273)
Q Consensus       137 ~g~~~~s  143 (273)
                      .|.|.++
T Consensus        75 ~~~s~p~   81 (86)
T d1tdqa3          75 RQQSLES   81 (86)
T ss_dssp             TEECCCE
T ss_pred             CCEECCE
Confidence            8877654

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.8e-12  Score=78.76  Aligned_cols=88  Identities=18%  Similarity=0.258  Sum_probs=55.0

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~  234 (273)
                      ++.|| ++++..   +.+++.|.|.+|.... +..+..|+|+|+..+..+.....     ..  ......++|.+|.|++
T Consensus         5 k~~Pp-~l~v~~---~~~s~~l~W~~P~~~~-~~~~~~Y~v~y~~~~~~~~~~~~-----~~--~~~~~~~~l~~L~p~t   72 (100)
T d2gysa4           5 QMAPP-SLQVTK---DGDSYSLRWETMKMRY-EHIDHTFEIQYRKDTATWKDSKT-----ET--LQNAHSMALPALEPST   72 (100)
T ss_dssp             CCCCC-EEEEC------CCCEEEEEC---------CEEEEEEEECSSSCSTTSCE-----EE--EESCSEEECCCCCSSC
T ss_pred             cCCCC-ccEEEE---CCCEEEEEEecCcccC-CccceEEEEEEeecccceeceee-----cc--cCCceEEEeCCCCCCC
Confidence            33456 688766   5578999999987632 22456899999976654322111     11  1124689999999999


Q ss_pred             eEEEEEEEecCCCc--CCCCcc
Q psy6638         235 KYAIVVRGYNSVGK--GPFSEP  254 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~--~~~s~~  254 (273)
                      .|.|+|+|.+..|.  |.||++
T Consensus        73 ~Y~~rVRa~~~~g~~~g~WSeW   94 (100)
T d2gysa4          73 RYWARVRVRTSRTGYNGIWSEW   94 (100)
T ss_dssp             CCEEEEEEEECCTTCCBCCCCC
T ss_pred             eEEEEEEEEECCCCCCCCccCC
Confidence            99999999987763  555544

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.6e-11  Score=75.54  Aligned_cols=86  Identities=27%  Similarity=0.452  Sum_probs=69.1

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ++|.++.+...+.+++.|+|+++.   +.+.+|.|.|+..+..+    .....+...+.+.+.+|.|++.|.|+|.|.+.
T Consensus         3 ~~P~~l~~~~~~~~sv~l~W~~p~---~~~~~Y~v~~~~~~~~~----~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   75 (93)
T d2cuma1           3 EAPRDLEAKEVTPRTALLTWTEPP---VRPAGYLLSFHTPGGQT----QEILLPGGITSHQLLGLFPSTSYNARLQAMWG   75 (93)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECCS---SCCSEEEEEEECTTSCE----EEEEECSSCSEEEECSCCTTCEEEEEEEEEBT
T ss_pred             CcCCCCEEEEeCCCEEEEEEEccc---cccccEEEEEEcccccc----EEEEECCCccEEEEeCccCCCEEEEEEEEEeC
Confidence            578899999999999999999873   36789999998865432    23456667889999999999999999999999


Q ss_pred             CCCCCCCcceEEEe
Q psy6638         137 LGMSETGAELQAST  150 (273)
Q Consensus       137 ~g~~~~s~~~~~~~  150 (273)
                      .|.+.+.. ..+.|
T Consensus        76 ~g~s~~~~-~~~tT   88 (93)
T d2cuma1          76 QSLLPPVS-TSFTT   88 (93)
T ss_dssp             TBCCCCEE-EEEEC
T ss_pred             CCCCCCEE-EEEEe
Confidence            98876543 44444

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2e-11  Score=74.80  Aligned_cols=81  Identities=20%  Similarity=0.428  Sum_probs=65.6

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCC
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPL  137 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~  137 (273)
                      +|.++++...+.+++.|+|+++.  ++.+.+|.|+|+.....+.  ..........+.+.+.+|.|++.|.|+|+|.+..
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~--~~~~~~y~v~y~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   78 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSPVKNEED--VAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQ   78 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCT--TCCCSEEEEEEEETTCTTC--CEEEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred             cCCceEEEEeCCCEEEEEEEecC--CCCcceeEEEEEECCCCcc--EEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCC
Confidence            68899999999999999999874  3467899999998765432  1234456677889999999999999999999988


Q ss_pred             CCCCC
Q psy6638         138 GMSET  142 (273)
Q Consensus       138 g~~~~  142 (273)
                      |.|.+
T Consensus        79 g~S~p   83 (91)
T d1fnfa2          79 HESTP   83 (91)
T ss_dssp             EECCC
T ss_pred             CCCCC
Confidence            86653

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.6e-11  Score=74.06  Aligned_cols=80  Identities=23%  Similarity=0.392  Sum_probs=66.2

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      .||.++++...+..++.|+|.++.   +++.+|.|.+....+...   .........+.+.+.+|.|++.|.|+|+|.+.
T Consensus         3 spP~~l~v~~~~~~si~v~W~~p~---~~~~~Y~i~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   76 (90)
T d1fnha2           3 SPPRRARVTDATETTITISWRTKT---ETITGFQVDAVPANGQTP---IQRTIKPDVRSYTITGLQPGTDYKIYLYTLND   76 (90)
T ss_dssp             CCCEEEEEEEECSSEEEEEEECCS---SCCCCEEEEEEESSSSCC---EEEECCTTCSEEEEESCCTTCEEEEEEEEEET
T ss_pred             CcCCCCEEEEecCCEEEEEEECCC---CCCceeEEEEEEccCCce---EEEecCCCccEEEeCCCCCCcEEEEEEEEEeC
Confidence            589999999999999999999874   368899999998655322   24455667789999999999999999999999


Q ss_pred             CCCCCC
Q psy6638         137 LGMSET  142 (273)
Q Consensus       137 ~g~~~~  142 (273)
                      .|.|.+
T Consensus        77 ~g~s~p   82 (90)
T d1fnha2          77 NARSSP   82 (90)
T ss_dssp             TEECCC
T ss_pred             CCCcCC
Confidence            887653

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=9.6e-12  Score=82.56  Aligned_cols=100  Identities=20%  Similarity=0.227  Sum_probs=75.9

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCCCCC---------ccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCC
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPYSGN---------TAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP  123 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~---------~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  123 (273)
                      ...|..+..+.+..++.+++.|+|.+|...+         ..+..|.+.+........   ......+..+.+.|.+|.|
T Consensus        15 ~~~~~~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~---~~~~~~~~~~~~~i~~L~P   91 (137)
T d1wk0a_          15 EALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGK---YKSVYVGEETNITLNDLKP   91 (137)
T ss_dssp             HHHTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSC---CEEEEEESCSEEEECSCCT
T ss_pred             ccCCCCCCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCcc---EEEEEecCccEEEECCCCC
Confidence            3456666666788889999999999875322         145678888876543211   2233455678899999999


Q ss_pred             CCeEEEEEEEeCCCCCCCCCcceEEEecCCCC
Q psy6638         124 ATQYQVRLLAENPLGMSETGAELQASTLEEAP  155 (273)
Q Consensus       124 ~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p  155 (273)
                      ++.|.|+|+|.|..|.|.++..+.++|....|
T Consensus        92 ~t~Y~f~V~A~n~~G~g~~S~~~~~~T~~~~P  123 (137)
T d1wk0a_          92 AMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEP  123 (137)
T ss_dssp             TCEECEEEEEEETTEECCCCCCCCEECCCSSS
T ss_pred             CcEEEEEEEEEcCCcccCCCCCEEEECCCCCC
Confidence            99999999999999999999989999977665

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.8e-12  Score=81.55  Aligned_cols=92  Identities=12%  Similarity=0.265  Sum_probs=66.0

Q ss_pred             ecCCCCCcceEEEEeeccEEEEEEeCCC--CCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEE
Q psy6638          53 QETPEAPKNIRITEESSRSLQISWTAPY--SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVR  130 (273)
Q Consensus        53 ~~~P~~p~~~~~~~~~~~~~~l~W~~~~--~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~  130 (273)
                      ..+|..|....+.....+.+.|.|+++.  ..++.+.+|.|+|+..+..+.    .. .. ....+.+.+|.+++.|.|+
T Consensus        15 ~~~P~~pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~----~~-~~-~~~~~~~~~L~p~t~Y~~~   88 (117)
T d1wj3a_          15 KTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNV----QV-LN-TNKTSAELVLPIKEDYIIE   88 (117)
T ss_dssp             CCCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSC----EE-EE-ESSSEEEEECCCSSCEEEE
T ss_pred             CCCcCCCCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCce----ee-ee-ceeeEEEeeccCCcEEEEE
Confidence            4456543333355567889999999743  456789999999988664332    11 11 2334566789999999999


Q ss_pred             EEEeCCCCCCCCCcceEEEe
Q psy6638         131 LLAENPLGMSETGAELQAST  150 (273)
Q Consensus       131 v~a~~~~g~~~~s~~~~~~~  150 (273)
                      |+|.|..|.|.++..+.+.+
T Consensus        89 V~A~n~~G~G~~S~~v~v~~  108 (117)
T d1wj3a_          89 VKATTDGGDGTSSEQIRIPR  108 (117)
T ss_dssp             EEEEESSCCCCBCCCEEECC
T ss_pred             EEEEcCCccCCCCCCEEEec
Confidence            99999999999988776643

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.5e-11  Score=77.64  Aligned_cols=86  Identities=13%  Similarity=0.110  Sum_probs=61.0

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC--CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeC
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE--EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAEN  135 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~  135 (273)
                      .|..+.+.....+.+.|+|.++....+.+..|.|+|+...  ..|..   ........+.+.+.+|.+++.|.|+|+|++
T Consensus        10 ~P~~p~~~~~~~~~i~v~W~pp~~~~~~~~~Y~i~y~~~~~~~~w~~---v~~~~~~~~~~~l~~L~p~t~Y~frVra~~   86 (106)
T d1cd9b2          10 LDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTL---VFHLPSSKDQFELCGLHQAPVYTLQMRCIR   86 (106)
T ss_dssp             CCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSTTCCCEE---EEEEESCEEEEEECCCCSCSCEEEEEEEEE
T ss_pred             CCCCCeEecCCCCEEEEEEcCcccCCccceEEEEEEeecccccccee---eecccCCceEEEEeccCCCeEEEEEEEEEe
Confidence            4445556777889999999998776777899999998753  34542   122334567889999999999999999999


Q ss_pred             CCCCCCCCcce
Q psy6638         136 PLGMSETGAEL  146 (273)
Q Consensus       136 ~~g~~~~s~~~  146 (273)
                      ..|.|.||.+.
T Consensus        87 ~~g~g~wS~wS   97 (106)
T d1cd9b2          87 SSLPGFWSPWS   97 (106)
T ss_dssp             SSSCCCCCCCC
T ss_pred             CCCCCCCcCCC
Confidence            99976666543

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.2e-11  Score=74.24  Aligned_cols=80  Identities=31%  Similarity=0.440  Sum_probs=65.6

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAEN  135 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~  135 (273)
                      ++|.++++..++.+++.|+|++|.   +.+.+|.|+|+.... .|.   .....+...+.+.+.+|.|++.|.|+|.|.+
T Consensus         2 d~P~~l~v~~vt~~sv~l~W~~p~---~~~~~Y~i~~~~~~~~~~~---~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~   75 (89)
T d1fnfa3           2 DSPTGIDFSDITANSFTVHWIAPR---ATITGYRIRHHPEHFSGRP---REDRVPHSRNSITLTNLTPGTEYVVSIVALN   75 (89)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEECSCCSSCC---EEEEEETTCCEEEEESCCTTCEEEEEEEEEE
T ss_pred             ccCcCCEEEEecCCEEEEEEEeCC---CEEeeEEEEEEECCCCCce---EEEEECCCccEEEECCCcccCEEEEEEEEEc
Confidence            578999999999999999999873   367899999987654 332   2345566788999999999999999999999


Q ss_pred             CCCCCCC
Q psy6638         136 PLGMSET  142 (273)
Q Consensus       136 ~~g~~~~  142 (273)
                      ..|.|.+
T Consensus        76 ~~g~s~p   82 (89)
T d1fnfa3          76 GREESPL   82 (89)
T ss_dssp             TTEECCC
T ss_pred             CCcCcCC
Confidence            9886654

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.29  E-value=2.7e-11  Score=73.66  Aligned_cols=80  Identities=28%  Similarity=0.493  Sum_probs=65.8

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ++|.++++..++.+++.|+|+++.   +.+.+|.|+|+.......   .....+...+.+.+.+|.|++.|.|+|.|.+.
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~~~---~~~~~Y~i~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   75 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTPPR---SRVDSYRVSYVPITGGTP---NVVTVDGSKTRTKLVKLVPGVDYNVNIISVKG   75 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECCCS---SCCSEEEEEEEETTCCCC---EEEEEETTCCEEEECSCCSSCEEEEEEEEEET
T ss_pred             cCCcceEEEEecCCEEEEEEEccc---EeeceEEEEEEeccCCce---EEEEecCCccEEEECCCCCCCEEEEEEEEEeC
Confidence            478899999999999999999873   468899999998654322   23445567789999999999999999999999


Q ss_pred             CCCCCC
Q psy6638         137 LGMSET  142 (273)
Q Consensus       137 ~g~~~~  142 (273)
                      .|.|.+
T Consensus        76 ~g~s~p   81 (88)
T d1qr4a2          76 FEESEP   81 (88)
T ss_dssp             TEECCC
T ss_pred             CCCcCC
Confidence            987754

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.5e-11  Score=72.01  Aligned_cols=86  Identities=24%  Similarity=0.333  Sum_probs=68.2

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      +|.++++...+.+++.|+|+++.   ..+.+|.+++..... .+.   .........+.+.+.+|.|++.|.|+|+|.|.
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p~---~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~   75 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPPN---VQLTGYRVRVTPKEKTGPM---KEINLAPDSSSVVVSGLMVATKYEVSVYALKD   75 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEESSSCSCC---CEEEECTTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCEEEEEecCCEEEEEEEccc---eeccceEEEEEeeeCCCce---EEEEeCCCCeEEEEecccCceEEEEEEEEEeC
Confidence            68899999999999999999874   357789999987643 222   23455667789999999999999999999999


Q ss_pred             CCCCCCCcceEEEe
Q psy6638         137 LGMSETGAELQAST  150 (273)
Q Consensus       137 ~g~~~~s~~~~~~~  150 (273)
                      .|.|.++. ..+.|
T Consensus        76 ~g~s~~~~-~~~~T   88 (90)
T d1fnha1          76 TLTSRPAQ-GVVTT   88 (90)
T ss_dssp             TEECCCEE-EEEEC
T ss_pred             CCCcCCEe-EEEEc
Confidence            99887654 33443

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-10  Score=73.28  Aligned_cols=95  Identities=16%  Similarity=0.151  Sum_probs=68.7

Q ss_pred             cCCCCCcceEEEEee-ccEEEEEEeCCC-CCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEE
Q psy6638          54 ETPEAPKNIRITEES-SRSLQISWTAPY-SGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRL  131 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~-~~~~~l~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v  131 (273)
                      .+|+||.++.+.... ...+.++|.+|. ........|.|+++..+..+..  .........+.+.+.+|.+++.|.|+|
T Consensus         3 Vk~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~--~~~~~~~~~t~~~i~~L~p~t~Y~~rV   80 (105)
T d1erna2           3 VLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSV--QRVEILEGRTECVLSNLRGRTRYTFAV   80 (105)
T ss_dssp             BCCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEE--EEEEECTTCCEEEECSCCSSCEEEEEE
T ss_pred             cccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCce--EEEeecCCccEEEEeCCCCCcEEEEEE
Confidence            578999999887754 456999999875 3445677999999987654331  233444566789999999999999999


Q ss_pred             EEeCCC--C---CCCCCcceEEEe
Q psy6638         132 LAENPL--G---MSETGAELQAST  150 (273)
Q Consensus       132 ~a~~~~--g---~~~~s~~~~~~~  150 (273)
                      +|....  +   +|.||.++.+.|
T Consensus        81 Rar~~~~~~~G~WSeWS~~v~~~t  104 (105)
T d1erna2          81 RARMAEPSFGGFWSAWSEPVSLLT  104 (105)
T ss_dssp             EEEECSSSCCBCCCCCCCCEEEEC
T ss_pred             EEEECCCCCCCCCCCCCCCEEeeC
Confidence            998532  2   466777676665

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5e-11  Score=75.67  Aligned_cols=96  Identities=19%  Similarity=0.197  Sum_probs=66.2

Q ss_pred             CCCCCeeEEecCCccCCceEEEEEeCCCCCC-ccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         155 PNGAPREVTSDPGVVDPTELLIKWKAPPRES-WNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       155 p~~~p~~~~~~~~~~~~~~i~l~W~~~~~~~-~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      -|.||.++.+.....+..++.|+|++|.... ..+.+..|.++++..+...+       .....  .....++|.+|.++
T Consensus         7 kP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~-------~~~~~--~~~~~~~i~~L~~~   77 (109)
T d1uc6a_           7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQW-------QHVEL--SNGTAHTITDAYAG   77 (109)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCC-------CCEEE--SSCSEEEETTCCSS
T ss_pred             ECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCce-------EEecc--CCceeEEeCCCCCC
Confidence            3458888887541136788999999986432 23456789999998765432       22222  23468999999999


Q ss_pred             ceEEEEEEEecCCC--cCCCCccEEEEc
Q psy6638         234 TKYAIVVRGYNSVG--KGPFSEPFIART  259 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g--~~~~s~~~~~~t  259 (273)
                      +.|.|+|+|.+..+  .|+||+.+.+.|
T Consensus        78 t~Y~~rVrA~~~~~g~wS~WS~~~~~tt  105 (109)
T d1uc6a_          78 KEYIIQVAAKDNEIGTWSDWSVAAHATP  105 (109)
T ss_dssp             SCEEEEEECCBSSSCCCCCCCEEEEECC
T ss_pred             CEEEEEEEEEECCCCCcCCCCCCEEeEC
Confidence            99999999988532  266676666654

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-11  Score=76.41  Aligned_cols=84  Identities=17%  Similarity=0.250  Sum_probs=64.8

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      +|++|.++++...+..++.|+|.++.+++.+ ..|.|.++.....+..  .........+.+.+.+|.+++.|.|+|.|.
T Consensus         3 PP~~P~n~~~~~~~~~si~~~W~p~~~~~~~-~~y~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~   79 (95)
T d1bqua1           3 PPEKPKNLSCIVNEGKKMRCEWDGGRETHLE-TNFTLKSEWATHKFAD--CKAKRDTPTSCTVDYSTVYFVNIEVWVEAE   79 (95)
T ss_dssp             CCCCCEEEEEEEETTSCCEEEEECCSCCSSC-CEEEEEEEETTEECCC--EECCSSCTTEEECSSCCCTTSCEEEEEEEE
T ss_pred             CcCCCeeeEEEEccCCEEEEEEeCcccCCCc-eEEEEEEEEcccceeE--eecccccceeeeeeeecCCCcEEEEEEEEE
Confidence            6899999999999999999999998765544 6899999886542221  111223345566778999999999999999


Q ss_pred             CCCCCCC
Q psy6638         135 NPLGMSE  141 (273)
Q Consensus       135 ~~~g~~~  141 (273)
                      |..|.+.
T Consensus        80 N~~G~s~   86 (95)
T d1bqua1          80 NALGKVT   86 (95)
T ss_dssp             ETTEEEE
T ss_pred             eCCcccc
Confidence            9999765

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=1.1e-10  Score=71.78  Aligned_cols=88  Identities=17%  Similarity=0.272  Sum_probs=70.2

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      .+++|.++.+...+..++.|+|.++.   +.+.+|.+.|+.... .+.   .....+...+.+.+.+|.|++.|.|+|+|
T Consensus         3 v~~~P~~l~v~~v~~~si~v~W~~p~---~~~~~y~i~~~~~~~~~~~---~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a   76 (93)
T d1tdqa1           3 VIDGPTQILVRDVSDTVAFVEWTPPR---AKVDFILLKYGLVGGEGGK---TTFRLQPPLSQYSVQALRPGSRYEVSISA   76 (93)
T ss_dssp             SSCCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEESSSSCCC---EEEEECTTCSEEEECSCCTTCEEEEEEEE
T ss_pred             cCCcCCCCEEEEeCCCEEEEEEEccc---cCCCceEEEEEeccCccee---eEEEeCCCceEEEEeCcccceEEEEEEEE
Confidence            35689999999999999999999863   467899999998654 222   24456667789999999999999999999


Q ss_pred             eCCCCCCCCCcceEEE
Q psy6638         134 ENPLGMSETGAELQAS  149 (273)
Q Consensus       134 ~~~~g~~~~s~~~~~~  149 (273)
                      .+..|.+.+.. ..+.
T Consensus        77 ~~~~g~s~~~~-~~~t   91 (93)
T d1tdqa1          77 VRGTNESDASS-TQFT   91 (93)
T ss_dssp             EETTEECCCEE-EEEE
T ss_pred             EeCCCCcCCEE-EEEE
Confidence            99998876543 3444

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.8e-11  Score=73.35  Aligned_cols=88  Identities=26%  Similarity=0.461  Sum_probs=65.8

Q ss_pred             CCcceEEEEee--ccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeC
Q psy6638          58 APKNIRITEES--SRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAEN  135 (273)
Q Consensus        58 ~p~~~~~~~~~--~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~  135 (273)
                      +|.++.+....  .+++.|+|++|.  .+.+.+|+|+|+..+....  .....+++....+.|.+|.|++.|.|+|.|+|
T Consensus         2 aP~~~~vt~~~~~~~s~~vsW~~P~--~~~i~~Y~i~y~~~~~~~~--~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~   77 (93)
T d1owwa_           2 GPVEVFITETPSQPNSHPIQWNAPQ--PSHISKYILRWRPKNSVGR--WKEATIPGHLNSYTIKGLKPGVVYEGQLISIQ   77 (93)
T ss_dssp             CCCEEECCCCSSCTTCEEEEEECCS--SSCEEEEEEEEEETTCSSC--CEEEEECSSCCEEEECSCCSSEEEEEEEEEEE
T ss_pred             cCcccEEEEccCCCCEEEEEeeccc--ccceeEEEEEEeeccccce--eeeeccCCCccEEEECCcccCcEEEEEEEEEe
Confidence            46666665543  479999999874  3478999999998654311  12355677888999999999999999999999


Q ss_pred             CCCCCCCCcceEEEe
Q psy6638         136 PLGMSETGAELQAST  150 (273)
Q Consensus       136 ~~g~~~~s~~~~~~~  150 (273)
                      ..|.+..+. ..++|
T Consensus        78 ~~G~s~~~~-~~~tT   91 (93)
T d1owwa_          78 QYGHQEVTR-FDFTT   91 (93)
T ss_dssp             SSSCEEEEE-EEEEE
T ss_pred             CCCccCcEE-EEEEe
Confidence            999776543 44444

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.5e-11  Score=73.38  Aligned_cols=80  Identities=31%  Similarity=0.425  Sum_probs=62.8

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ++|.++++...+.+++.|+|++|.   +.+.+|.|+++..+......  ........+.+.+.+|.|++.|.|+|+|.+.
T Consensus         2 daP~nl~v~~~~~~s~~l~W~~p~---~~i~~Y~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~   76 (89)
T d1fnha3           2 DAPSNLRFLATTPNSLLVSWQPPR---ARITGYIIKYEKPGSPPREV--VPRPRPGVTEATITGLEPGTEYTIYVIALKN   76 (89)
T ss_dssp             CCCEEEEEEEEETTEEEEEEECCS---SCCSEEEEEEECTTSCCEEC--TTCCCTTCCEEEEESCCTTCEEEEEEEEESS
T ss_pred             ccCcCCEEEEecCCEEEEEEeCCC---cCCceEEEEEeeccCCccEE--EEEcCCCccEEEEEeeeCCCEEEEEEEEEcC
Confidence            478999999999999999999873   36889999999865432111  1123445678999999999999999999998


Q ss_pred             CCCCC
Q psy6638         137 LGMSE  141 (273)
Q Consensus       137 ~g~~~  141 (273)
                      .|.|.
T Consensus        77 ~g~S~   81 (89)
T d1fnha3          77 NQKSE   81 (89)
T ss_dssp             SCEEE
T ss_pred             CCEeC
Confidence            88653

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.4e-10  Score=69.86  Aligned_cols=79  Identities=28%  Similarity=0.482  Sum_probs=63.9

Q ss_pred             cceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCC
Q psy6638          60 KNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLG  138 (273)
Q Consensus        60 ~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g  138 (273)
                      +++++...+.+++.|.|.+|.   +.+.+|.|+|...+. .+.   .....+...+.+.|.+|.|++.|.|+|.|.+..|
T Consensus         1 rnl~v~~~t~~sv~l~W~~p~---~~~~~Y~v~~~~~~~~~~~---~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g   74 (91)
T d1fnaa_           1 RDLEVVAATPTSLLISWDAPA---VTVRYYRITYGETGGNSPV---QEFTVPGSKSTATISGLKPGVDYTITVYAVTGRG   74 (91)
T ss_dssp             CCCEEEEECSSCEEEECCCCS---SCCSEEEEEEEETTCCSCC---EEEEEETTCCEEEECSCCTTCEEEEEEEEECTTC
T ss_pred             CCCEEEEeCCCEEEEEEEccc---eEecEEEEEEEcCCCCcee---EEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCc
Confidence            478889999999999999873   367899999988654 222   2344567788999999999999999999999999


Q ss_pred             CCCCCc
Q psy6638         139 MSETGA  144 (273)
Q Consensus       139 ~~~~s~  144 (273)
                      .+.++.
T Consensus        75 ~s~~~s   80 (91)
T d1fnaa_          75 DSPASS   80 (91)
T ss_dssp             CSSCSC
T ss_pred             cCCCcC
Confidence            776543

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.9e-11  Score=73.53  Aligned_cols=82  Identities=27%  Similarity=0.430  Sum_probs=64.0

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENP  136 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~  136 (273)
                      ++|.++++...+.+++.|+|++|.   +.+.+|.+.++........  .........+.+.+.+|.|++.|.|+|.|.+.
T Consensus         3 d~P~~l~v~~vt~~sv~l~W~~p~---~~~~~y~i~~~~~~~~~~~--~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   77 (94)
T d1j8ka_           3 DRPKGLAFTDVDVDSIKIAWESPQ---GQVSRYRVTYSSPEDGIHE--LFPAPDGEEDTAELQGLRPGSEYTVSVVALHD   77 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCS---SCCSCEEEEEEETTTEEEE--ECCCCCSSCCEEEECSCCCCSEEEEEEEECSS
T ss_pred             CCCCCCEEEEecCCEEEEEEeCCC---ccccceEEEEEeecCCCce--EEEecCCCccEEEECCCCCCCEEEEEEEEEeC
Confidence            578899999999999999999873   3578999999876542110  11223456788999999999999999999999


Q ss_pred             CCCCCCC
Q psy6638         137 LGMSETG  143 (273)
Q Consensus       137 ~g~~~~s  143 (273)
                      .|.|.+.
T Consensus        78 ~g~S~p~   84 (94)
T d1j8ka_          78 DMESQPL   84 (94)
T ss_dssp             SCCCCCE
T ss_pred             CCCcCCE
Confidence            8876554

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.8e-10  Score=74.12  Aligned_cols=86  Identities=17%  Similarity=0.223  Sum_probs=66.6

Q ss_pred             eeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCcc-ceE-EecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCc
Q psy6638          67 ESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQP-LKI-IVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGA  144 (273)
Q Consensus        67 ~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~  144 (273)
                      ++.+++.|+|+++. .++.+.+|.|.|+.......... ... ......+++.|.+|.|++.|.|+|+|.|..|.|.++.
T Consensus        27 ~s~tsi~v~W~~p~-~~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~~S~  105 (120)
T d1ujta_          27 LTPTTVQVTWTVDR-QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSE  105 (120)
T ss_dssp             CBTTEEEEEEEESS-CCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCCCC
T ss_pred             eCCCeEEEEecCCC-CCCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcCCCC
Confidence            56889999999875 34578999999987653222111 112 2234567899999999999999999999999999999


Q ss_pred             ceEEEecCC
Q psy6638         145 ELQASTLEE  153 (273)
Q Consensus       145 ~~~~~~~~~  153 (273)
                      .+.+.|.++
T Consensus       106 ~~~~~T~e~  114 (120)
T d1ujta_         106 SKTVRTTEE  114 (120)
T ss_dssp             CEEEEECSS
T ss_pred             CEEEEeCCC
Confidence            999988765

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=6.2e-11  Score=74.95  Aligned_cols=93  Identities=20%  Similarity=0.194  Sum_probs=63.6

Q ss_pred             cCCCCCcceEE-EEeeccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccce-EE---ecCCccEEEecCCCCCCeE
Q psy6638          54 ETPEAPKNIRI-TEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLK-II---VPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        54 ~~P~~p~~~~~-~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~-~~---~~~~~~~~~~~~l~~~~~y  127 (273)
                      .+|++|.++++ .......++|+|.++.+++.++ .|.+.+.... ..+...... ..   .....+.+.+.+|.+++.|
T Consensus         3 ~PP~~P~~v~~i~~~~~~sv~~sW~p~~d~~~~~-~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~Y   81 (107)
T d1cd9b1           3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLPT-SFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYM   81 (107)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCSCCSSCC-EEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSCE
T ss_pred             CccCCCcCCEEEEecCCCEEEEEEcCCCCCCCCc-ceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCceE
Confidence            36889999985 4557889999999887766665 5666665432 222212111 11   1124567888999999999


Q ss_pred             EEEEEEeCCCCCCCCCcceEE
Q psy6638         128 QVRLLAENPLGMSETGAELQA  148 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~s~~~~~  148 (273)
                      .|+|.|.|..|.+. +..+.+
T Consensus        82 ~frV~A~N~~G~s~-S~~~~~  101 (107)
T d1cd9b1          82 AIWVQAENMLGSSE-SPKLCL  101 (107)
T ss_dssp             EEEEEEEETTEEEE-CCCEEE
T ss_pred             EEEEEEEeCCcccc-CCCEEc
Confidence            99999999999764 444443

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3e-10  Score=71.96  Aligned_cols=90  Identities=17%  Similarity=0.371  Sum_probs=64.7

Q ss_pred             cCCCCCcceEEEEe--eccEEEEEEeCCCC---CCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeE
Q psy6638          54 ETPEAPKNIRITEE--SSRSLQISWTAPYS---GNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        54 ~~P~~p~~~~~~~~--~~~~~~l~W~~~~~---~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      ..|+||.++.+...  ....+.|+|.+|..   .......|.++++..+. .|..     ......+.+.+.+|.+++.|
T Consensus         6 VkP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~-----~~~~~~~~~~i~~L~~~t~Y   80 (109)
T d1uc6a_           6 VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQH-----VELSNGTAHTITDAYAGKEY   80 (109)
T ss_dssp             CCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCC-----EEESSCSEEEETTCCSSSCE
T ss_pred             EECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEE-----eccCCceeEEeCCCCCCCEE
Confidence            46899999988765  46789999998753   23345679999887653 4542     22345678999999999999


Q ss_pred             EEEEEEeCCCC--CCCCCcceEE
Q psy6638         128 QVRLLAENPLG--MSETGAELQA  148 (273)
Q Consensus       128 ~~~v~a~~~~g--~~~~s~~~~~  148 (273)
                      .|||+|.+..+  +|.||..+..
T Consensus        81 ~~rVrA~~~~~g~wS~WS~~~~~  103 (109)
T d1uc6a_          81 IIQVAAKDNEIGTWSDWSVAAHA  103 (109)
T ss_dssp             EEEEECCBSSSCCCCCCCEEEEE
T ss_pred             EEEEEEEECCCCCcCCCCCCEEe
Confidence            99999987532  3555554444

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.8e-11  Score=72.93  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=57.6

Q ss_pred             CCCeeEEecCCcc-CCceEEEEEeCCCCCCc--cceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCcc
Q psy6638         157 GAPREVTSDPGVV-DPTELLIKWKAPPRESW--NGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPY  233 (273)
Q Consensus       157 ~~p~~~~~~~~~~-~~~~i~l~W~~~~~~~~--~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~  233 (273)
                      .||.++++..  . .+..+.|+|.+|.....  +...+.|+|+|+..+...+.       ......  .+.   .+|.|+
T Consensus         3 dPP~nl~v~~--~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~-------~~~~~~--~t~---~~L~p~   68 (94)
T d3d85d3           3 DPPKNLQLKP--LKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKK-------DRVFTD--KTS---ATVICR   68 (94)
T ss_dssp             CCCEEEEEEE--C----CEEEEEECCTTSCSCTTTSCEEEEEEEECC-------------CEEEES--SSE---EEECCC
T ss_pred             CCCcccEEEE--ecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccE-------Eecccc--ceE---EEecCC
Confidence            5888999875  4 45679999999975321  23468999999987654321       111111  122   357899


Q ss_pred             ceEEEEEEEecCCCcCCCCccEEE
Q psy6638         234 TKYAIVVRGYNSVGKGPFSEPFIA  257 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~~s~~~~~  257 (273)
                      +.|.|+|+|.+..|.|.||++..+
T Consensus        69 ~~Y~v~VRa~~~~~~g~WSeWS~~   92 (94)
T d3d85d3          69 KNASISVRAQDRYYSSSWSEWASV   92 (94)
T ss_dssp             SSCEEEEEEEESSSCCCCCCCEEE
T ss_pred             CCEEEEEEEecCCCCCCCccCcCC
Confidence            999999999999899999987654

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.7e-10  Score=71.08  Aligned_cols=86  Identities=20%  Similarity=0.413  Sum_probs=66.4

Q ss_pred             cCCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCc-----cceEEecCCccEEEecCCCCCCeE
Q psy6638          54 ETPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQ-----PLKIIVPGSQTSATLQPLLPATQY  127 (273)
Q Consensus        54 ~~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~y  127 (273)
                      ++|.+|.++.+...+.+++.|+|+++.   +.+.+|.|++..... .+...     .......+....+.+.+|.|++.|
T Consensus         2 g~Pp~~~~l~v~~~t~~sv~v~W~pp~---~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y   78 (101)
T d2cuia1           2 GSRPRLSQLSVTDVTTSSLRLNWEAPP---GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLY   78 (101)
T ss_dssp             CCCCCCCCCEEESCCSSCEEEECCCCT---TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCEE
T ss_pred             CCccCCCCcEEEEECCCEEEEEEEecc---ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCEE
Confidence            467788999999999999999998763   367899999987542 11111     112344567788999999999999


Q ss_pred             EEEEEEeCCCCCCCC
Q psy6638         128 QVRLLAENPLGMSET  142 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~  142 (273)
                      .|+|+|.+..|.|..
T Consensus        79 ~~~V~a~~~~g~g~~   93 (101)
T d2cuia1          79 SLTLYGLRGPHKADS   93 (101)
T ss_dssp             EEEEEEECSSSEEEE
T ss_pred             EEEEEEEeCCcEeCC
Confidence            999999999887654

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.3e-12  Score=81.68  Aligned_cols=100  Identities=17%  Similarity=0.229  Sum_probs=69.3

Q ss_pred             ecCCCCCcceEEEE-eeccEEEEEEeCCCC------CCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCC
Q psy6638          53 QETPEAPKNIRITE-ESSRSLQISWTAPYS------GNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPAT  125 (273)
Q Consensus        53 ~~~P~~p~~~~~~~-~~~~~~~l~W~~~~~------~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  125 (273)
                      ..+|.+|.++.+.. .+..++.|+|.+|..      .+..+.+|.+++..  ..+   ..........+.+.|.+|++++
T Consensus         8 ~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~~--~~~---~~~~~~~~~~~~~~i~~L~~~t   82 (117)
T d2cspa1           8 AGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKG--QRV---AEVIFPTADSTAVELVRLRSLE   82 (117)
T ss_dssp             CCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSS--SEE---EEECCTTCSEEEEESHHHHHHT
T ss_pred             CCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEeec--ccc---eeeeeeccceeeeeccCCCCCc
Confidence            35678999988754 456789999998742      12345556554311  110   0111222345678899999999


Q ss_pred             eEEEEEEEeCCCCCCCCCcceEEEecCCCCCC
Q psy6638         126 QYQVRLLAENPLGMSETGAELQASTLEEAPNG  157 (273)
Q Consensus       126 ~y~~~v~a~~~~g~~~~s~~~~~~~~~~~p~~  157 (273)
                      .|.|+|+|.|..|.|..|..+.+.+...+|+.
T Consensus        83 ~Y~v~V~A~n~~G~s~~S~~v~i~t~~~vP~~  114 (117)
T d2cspa1          83 AKGVTVRTLSAQGESVDSAVAAVPPELLVPPT  114 (117)
T ss_dssp             CSCBEEEEEESSCCCCCCSCBCCCHHHHSCCC
T ss_pred             EEEEEEEEEcCCCcCCCCCCEEeeCCCCCCcc
Confidence            99999999999999999998888887666653

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.1e-10  Score=72.40  Aligned_cols=89  Identities=8%  Similarity=0.029  Sum_probs=58.7

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++++..  .+.. ..|.|++|...  ++.+  |.+++...+...+..    +............+++.+|.++..|.
T Consensus         3 ~P~nv~v~s--~n~~-~~L~W~pP~~~--g~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~Y~   71 (98)
T d1fyhb1           3 TPTNVTIES--YNMN-PIVYWEYQIMP--QVPV--FTVEVKNYGVKNSEW----IDACINISHHYCNISDHVGDPSNSLW   71 (98)
T ss_dssp             CCEEEEEEC--BSSC-CEEEEECCCCS--SCCE--EEEEEEETTCSSSCC----EEEEEEESSSEEECGGGCCSTTSCEE
T ss_pred             cCCceEEEE--eCCc-EEEEECCCCCC--CCCc--eeEEEEEecccccee----EEeeeecccceeeeEecccCCCCEEE
Confidence            678999987  5544 46999998763  4444  444444443322211    11222223334567888999999999


Q ss_pred             EEEEEecCCCcCCCCccEEE
Q psy6638         238 IVVRGYNSVGKGPFSEPFIA  257 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~~~~~  257 (273)
                      |||+|+|..|.|++++.-.|
T Consensus        72 fRV~A~n~~g~S~ws~s~~f   91 (98)
T d1fyhb1          72 VRVKARVGQKESAYAKSEEF   91 (98)
T ss_dssp             EEEEEEETTEECCCEECCCB
T ss_pred             EEEEEEcCCcccCCccCCCc
Confidence            99999999999998865443

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=9.5e-10  Score=68.37  Aligned_cols=87  Identities=17%  Similarity=0.258  Sum_probs=56.2

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCC-CccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSG-NTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~-~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      ++.|| ++.+.. ..+++.|.|.+|... ......|+|+++.....|.....  ......+.+.+.+|.|++.|.|||+|
T Consensus         5 k~~Pp-~l~v~~-~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~--~~~~~~~~~~l~~L~p~t~Y~~rVRa   80 (100)
T d2gysa4           5 QMAPP-SLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKT--ETLQNAHSMALPALEPSTRYWARVRV   80 (100)
T ss_dssp             CCCCC-EEEEC----CCCEEEEEC--------CEEEEEEEECSSSCSTTSCE--EEEESCSEEECCCCCSSCCCEEEEEE
T ss_pred             cCCCC-ccEEEE-CCCEEEEEEecCcccCCccceEEEEEEeecccceeceee--cccCCceEEEeCCCCCCCeEEEEEEE
Confidence            45566 676655 456899999988643 33566899999987666543222  22235678999999999999999999


Q ss_pred             eCCCCC--CCCCcc
Q psy6638         134 ENPLGM--SETGAE  145 (273)
Q Consensus       134 ~~~~g~--~~~s~~  145 (273)
                      .+..|.  |.||++
T Consensus        81 ~~~~g~~~g~WSeW   94 (100)
T d2gysa4          81 RTSRTGYNGIWSEW   94 (100)
T ss_dssp             EECCTTCCBCCCCC
T ss_pred             EECCCCCCCCccCC
Confidence            976652  444443

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.4e-10  Score=71.91  Aligned_cols=86  Identities=14%  Similarity=0.151  Sum_probs=59.0

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceEE
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKYA  237 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y~  237 (273)
                      +|.++++..   ......|+|++|...   +....|.|+|+..+...+...    ............+.+.+|.++..|.
T Consensus         6 ~P~nv~~~s---~n~~~~L~W~pp~~~---g~~~~Y~Ve~~~~~~~~W~~v----~~c~~~t~~~~~~~~~~l~~~~~Y~   75 (99)
T d1y6kr1           6 SPPSVWFEA---EFFHHILHWTPIPQQ---SESTCYEVALLRYGIESWNSI----SQCSQTLSYDLTAVTLDLYHSNGYR   75 (99)
T ss_dssp             CCSCEEEEE---ETTEEEEEECCCTTC---CTTCEEEEEEEETTSCCCEEE----EEEESSSEEECGGGGTTGGGSSCEE
T ss_pred             CCCcceEEE---ECCEEEEEEcCCCCc---CCCCEEEEEEEECCCcceEEE----EeeccccccceeeeeeecCCCCEEE
Confidence            355888765   455788999988773   334679999998765432211    1111111112344678999999999


Q ss_pred             EEEEEecCCCcCCCCc
Q psy6638         238 IVVRGYNSVGKGPFSE  253 (273)
Q Consensus       238 ~~v~a~n~~g~~~~s~  253 (273)
                      |||+|.|..|.|.|+.
T Consensus        76 fRVrA~n~~g~S~Ws~   91 (99)
T d1y6kr1          76 ARVRAVDGSRHSQWTV   91 (99)
T ss_dssp             EEEEEEETTEECCCEE
T ss_pred             EEEEEEcCCCcCCCcc
Confidence            9999999999998865

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.5e-10  Score=70.77  Aligned_cols=89  Identities=13%  Similarity=0.089  Sum_probs=60.5

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEe
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAE  134 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~  134 (273)
                      | +|.++++.+.+.. ..|+|++|...++..  |.+++...+ ..|.............+.+.+.+|.++..|.|||+|.
T Consensus         2 P-~P~nv~v~s~n~~-~~L~W~pP~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~   77 (98)
T d1fyhb1           2 P-TPTNVTIESYNMN-PIVYWEYQIMPQVPV--FTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKAR   77 (98)
T ss_dssp             C-CCEEEEEECBSSC-CEEEEECCCCSSCCE--EEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEE
T ss_pred             c-cCCceEEEEeCCc-EEEEECCCCCCCCCc--eeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEE
Confidence            5 7899998876554 469999986555544  445554433 2333222333344455666778999999999999999


Q ss_pred             CCCCCCCCCcceEE
Q psy6638         135 NPLGMSETGAELQA  148 (273)
Q Consensus       135 ~~~g~~~~s~~~~~  148 (273)
                      +..|.|.++....+
T Consensus        78 n~~g~S~ws~s~~f   91 (98)
T d1fyhb1          78 VGQKESAYAKSEEF   91 (98)
T ss_dssp             ETTEECCCEECCCB
T ss_pred             cCCcccCCccCCCc
Confidence            99998888765443

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=9.6e-11  Score=76.29  Aligned_cols=94  Identities=12%  Similarity=0.167  Sum_probs=67.7

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCC-CCccceEEEEEEEeCCCC---------------CCCcc------ceEEecCCcc
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYS-GNTAITQYIIQYKSSEEM---------------WPTQP------LKIIVPGSQT  114 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~~---------------~~~~~------~~~~~~~~~~  114 (273)
                      ..|.++.+.....++|.|+|++|.. ..+.+.+|.|+|+.....               |....      .........+
T Consensus         3 s~plnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (125)
T d2dtge3           3 NELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP   82 (125)
T ss_dssp             CCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred             CCCEEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence            3677888999999999999998864 346789999998764321               11100      0011223567


Q ss_pred             EEEecCCCCCCeEEEEEEEeCCCCC-----CCCCcceEEEe
Q psy6638         115 SATLQPLLPATQYQVRLLAENPLGM-----SETGAELQAST  150 (273)
Q Consensus       115 ~~~~~~l~~~~~y~~~v~a~~~~g~-----~~~s~~~~~~~  150 (273)
                      .+.|.+|.|++.|.|+|+|.|..|.     |..|..+.++|
T Consensus        83 ~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T  123 (125)
T d2dtge3          83 GWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQT  123 (125)
T ss_dssp             EEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBC
T ss_pred             EEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEEEc
Confidence            8999999999999999999999884     45566665555

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=4.7e-09  Score=64.13  Aligned_cols=86  Identities=17%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             CCCCCcceEEEEee-ccEEEEEEeCCCCCC----ccceEEEEEEEeCCC-CCCCccceEEecCCccEEEecCCCCCCeEE
Q psy6638          55 TPEAPKNIRITEES-SRSLQISWTAPYSGN----TAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATLQPLLPATQYQ  128 (273)
Q Consensus        55 ~P~~p~~~~~~~~~-~~~~~l~W~~~~~~~----~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~  128 (273)
                      +|+||.++.+.... .+.+.|+|.+|....    .-...|+|+|+..+. .|..    ... ...+.+   .|.+++.|.
T Consensus         1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~----~~~-~~~t~~---~L~p~~~Y~   72 (94)
T d3d85d3           1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKD----RVF-TDKTSA---TVICRKNAS   72 (94)
T ss_dssp             CCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------C----EEE-ESSSEE---EECCCSSCE
T ss_pred             CCCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEE----ecc-ccceEE---EecCCCCEE
Confidence            58999999987653 467999999886322    235789999987654 3331    111 122333   477999999


Q ss_pred             EEEEEeCCCCCCCCCcceEE
Q psy6638         129 VRLLAENPLGMSETGAELQA  148 (273)
Q Consensus       129 ~~v~a~~~~g~~~~s~~~~~  148 (273)
                      |+|+|.+..+.|.||++..+
T Consensus        73 v~VRa~~~~~~g~WSeWS~~   92 (94)
T d3d85d3          73 ISVRAQDRYYSSSWSEWASV   92 (94)
T ss_dssp             EEEEEEESSSCCCCCCCEEE
T ss_pred             EEEEEecCCCCCCCccCcCC
Confidence            99999988777888877654

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.3e-09  Score=67.45  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=59.5

Q ss_pred             CCCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC-CCCCCccceEEecCCccEEEecCCCCCCeEEEEEEE
Q psy6638          55 TPEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE-EMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLA  133 (273)
Q Consensus        55 ~P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a  133 (273)
                      .|. |.++++.+. +....|.|+++...++ ...|.|+++..+ ..|.....+.........+.+.+|..+..|.|||+|
T Consensus         4 lP~-P~nv~~~s~-n~~~~L~W~pp~~~g~-~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA   80 (99)
T d1y6kr1           4 LPS-PPSVWFEAE-FFHHILHWTPIPQQSE-STCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRA   80 (99)
T ss_dssp             CCC-CSCEEEEEE-TTEEEEEECCCTTCCT-TCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEE
T ss_pred             CCC-CCcceEEEE-CCEEEEEEcCCCCcCC-CCEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEE
Confidence            454 668887654 5567899998765433 457999999864 467643333222111223346788899999999999


Q ss_pred             eCCCCCCCCCc
Q psy6638         134 ENPLGMSETGA  144 (273)
Q Consensus       134 ~~~~g~~~~s~  144 (273)
                      .+..|.|.|+.
T Consensus        81 ~n~~g~S~Ws~   91 (99)
T d1y6kr1          81 VDGSRHSQWTV   91 (99)
T ss_dssp             EETTEECCCEE
T ss_pred             EcCCCcCCCcc
Confidence            99999888765

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.8e-08  Score=60.45  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=44.0

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK   60 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~   60 (273)
                      ..+..++|.|.++...|.|.|+|.|.|..|.....+.+.+..+|++|.
T Consensus        51 ~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P~pP~   98 (101)
T d2cqva1          51 NSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA   98 (101)
T ss_dssp             ECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSCCC
T ss_pred             EecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecCCCcC
Confidence            356678999999999999999999999999999999999999999885

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=8.9e-08  Score=59.66  Aligned_cols=57  Identities=18%  Similarity=0.049  Sum_probs=46.0

Q ss_pred             eeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCCc
Q psy6638           4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAPK   60 (273)
Q Consensus         4 r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p~   60 (273)
                      ++............+.|.|.++...|.|.|+|.|.|..|.....+.+.+..+|.|+.
T Consensus        48 ~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~P~~  104 (105)
T d1wwca_          48 IIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVD  104 (105)
T ss_dssp             SEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCCCCSC
T ss_pred             ceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEeCCCCCC
Confidence            333333333444567899999999999999999999999999999999999998764

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=5.1e-08  Score=67.87  Aligned_cols=84  Identities=17%  Similarity=0.117  Sum_probs=43.5

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCCCCccceE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPGLTPYTKY  236 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~Y  236 (273)
                      .+|.++.+..  .+.+++.|+|++|..  .+|.+.+|.|+|+.........             .........|.+.+.|
T Consensus         4 s~P~~~~~~~--~s~~si~vsW~pP~~--~ng~i~~Y~V~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~y   66 (196)
T d2dtge2           4 SVPLDPISVS--NSSSQIILKWKPPSD--PNGNITHYLVFWERQAEDSELF-------------ELDYCLKGLKLPSRTW   66 (196)
T ss_dssp             CCCEEEEEEE--CSSSCEEEEEECCCC--SSSSCSEEECCEEEECCCCSCT-------------TCSSSCSCCCCCC---
T ss_pred             cCCcCCEEEe--ccCCEEEEEEECCCC--CCCcEEEEEEEEEcCCCCCcee-------------EEeeEEeccccceeEE
Confidence            5889999988  899999999999876  5788999999998875432110             0112233456788899


Q ss_pred             EEEEEEecCCCcCCCCccEEE
Q psy6638         237 AIVVRGYNSVGKGPFSEPFIA  257 (273)
Q Consensus       237 ~~~v~a~n~~g~~~~s~~~~~  257 (273)
                      .+++.+.+..|.+..+....+
T Consensus        67 ~~~v~~~~~~~~~~~~~~~~~   87 (196)
T d2dtge2          67 SPPFESEDSQKHNQSEYEDSA   87 (196)
T ss_dssp             ---------------------
T ss_pred             EEEEEEEcCCccccCcCCccc
Confidence            999999998877655543333

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.1e-06  Score=55.40  Aligned_cols=44  Identities=18%  Similarity=0.198  Sum_probs=38.7

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCCCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPEAP   59 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~~p   59 (273)
                      ..+.|.|.++.++|.|.|+|.|.|..|.....+.+.|..++..+
T Consensus        66 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~~  109 (113)
T d2dava1          66 YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT  109 (113)
T ss_dssp             EEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCCCSC
T ss_pred             CEEEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEEcCCCcC
Confidence            46789999999999999999999999999888899887776544

>d2qfra1 b.1.12.1 (A:9-120) Purple acid phosphatase, N-terminal domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.21  E-value=1.3e-05  Score=49.75  Aligned_cols=92  Identities=18%  Similarity=0.219  Sum_probs=52.7

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEe---cCCcccEEEcCCCCccc
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVEL---DNQYEGELRIPGLTPYT  234 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~L~p~~  234 (273)
                      +|..+++.......+++.|+|.-....  .    .-.|+|....+...............   .......+.|.+|+|++
T Consensus        18 ~P~qvhlt~~~~~~tsm~VsW~T~~~~--~----~~~V~yg~~~~~~~~~a~~~~~~~~~~~~~~~~~h~v~Lt~L~P~T   91 (112)
T d2qfra1          18 APQQVHITQGDLVGRAMIISWVTMDEP--G----SSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNT   91 (112)
T ss_dssp             CCEEEEEEECSSSSSCEEEEEEESSSC--C----CCEEEEEESSSCCCEEEECEEECCBCSSCBCCEEEEEEECSCCTTC
T ss_pred             CCccEEEeCcCCCCCEEEEEEECCCCC--C----CcEEEEEECCCCCCcEEEEEEEEEEecccCCcEEEEEEECCCCCCC
Confidence            577777654113457999999875441  2    23455554433211110000000001   11223468999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      .|.|+|      |.+.+|++..|+|++
T Consensus        92 ~Y~YrV------G~~~~S~~~~F~T~P  112 (112)
T d2qfra1          92 KYYYEV------GLRNTTRRFSFITPP  112 (112)
T ss_dssp             EEEEEE------CCSSSCEEEEEECCC
T ss_pred             EEEEEE------CCCCceeeEEEEcCC
Confidence            999998      334488889999964

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4e-06  Score=51.65  Aligned_cols=42  Identities=21%  Similarity=0.208  Sum_probs=38.3

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      ..++|.|.++.+.|.|.|+|.|.|..|.....+.+.+..+|+
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~  101 (103)
T d1wwbx_          60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCC
T ss_pred             ceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEEeCCC
Confidence            356899999999999999999999999999999998888875

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.10  E-value=6.6e-07  Score=54.66  Aligned_cols=45  Identities=31%  Similarity=0.276  Sum_probs=38.8

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      .++..+.|.|.++...|.|.|+|.|.|..|.....+.+.+...+.
T Consensus        52 ~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~   96 (97)
T d1koaa1          52 YNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE   96 (97)
T ss_dssp             CSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEECSCC
T ss_pred             ecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEeecCC
Confidence            466788899999999999999999999999988888888765544

>d1xzwa1 b.1.12.1 (A:1-119) Purple acid phosphatase, N-terminal domain {Sweet potato (Ipomoea batatas) [TaxId: 4120]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Sweet potato (Ipomoea batatas) [TaxId: 4120]

Probab=98.04  E-value=2.4e-05  Score=49.13  Aligned_cols=93  Identities=20%  Similarity=0.224  Sum_probs=52.6

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEE---ecCCcccEEEcCCCCccc
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE---LDNQYEGELRIPGLTPYT  234 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~L~p~~  234 (273)
                      +|..+++.......+++.|+|.-..+.. ..    -.|+|....+..............   ........++|.+|+|++
T Consensus        24 ~P~qvhl~~~~~~~tsm~VsW~T~~~~~-~~----~~V~yG~~~~~~~~~a~g~s~~~~~~~~~~~~~H~v~LtgL~P~T   98 (119)
T d1xzwa1          24 APQQVHITQGDYEGRGVIISWTTPYDKA-GA----NKVFYWSENSKSQKRAMGTVVTYKYYNYTSAFIHHCTIKDLEYDT   98 (119)
T ss_dssp             CCEEEEEEECSSSSSCEEEEEEESSCCT-TT----TEEEEEETTCCCCEEEECEEECCEETTEECCEEEEEEECCCCTTC
T ss_pred             CCCEEEEEecCCCCCEEEEEEECCCCCC-CC----CEEEEcCCCCCCccEEEEEEEEeecccccCCeEEEEEECCCCCCC
Confidence            5666666541134679999999754321 11    256665543322111100000000   111223568999999999


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEcCC
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIARTNE  261 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t~~  261 (273)
                      .|.|+|-      .+.+|+...|+|++
T Consensus        99 ~Y~YrVG------~~~~S~~~~F~T~P  119 (119)
T d1xzwa1          99 KYYYRLG------FGDAKRQFWFVTPP  119 (119)
T ss_dssp             EEEEEEC------CGGGCEEEEEECCC
T ss_pred             EEEEEEC------CCCccceEEEeCCC
Confidence            9999982      33478888999864

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=4.4e-06  Score=53.78  Aligned_cols=41  Identities=15%  Similarity=0.194  Sum_probs=36.1

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      ..+..++|.|.++.++|.|.|+|.|.|..|.....+.+.|.
T Consensus        89 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          89 TTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            35667899999999999999999999999998888887764

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=97.95  E-value=1.2e-05  Score=49.36  Aligned_cols=41  Identities=32%  Similarity=0.408  Sum_probs=35.8

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      .+..++|.|.++...|.|.|+|.|.|..|.....+.+.|+.
T Consensus        61 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          61 EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET  101 (102)
T ss_dssp             TTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEEEE
Confidence            44567899999999999999999999999988888887753

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.94  E-value=5.6e-06  Score=49.90  Aligned_cols=39  Identities=21%  Similarity=0.275  Sum_probs=35.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .+..+.|.|.++..+|.|.|+|.|.|..|.....+.+.|
T Consensus        54 ~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          54 KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             ETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cccceeeccccccccccEEEEEEEEECCCEEEEEEEEEE
Confidence            556778999999999999999999999999888887765

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.1e-05  Score=50.28  Aligned_cols=40  Identities=20%  Similarity=0.229  Sum_probs=36.0

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQET   55 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~   55 (273)
                      ..+.|.|.++.+.|.|.|+|.|.|..|...+.+.|.|..+
T Consensus        70 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          70 YLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             CEEEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEEec
Confidence            4678999999999999999999999999999998888643

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.2e-05  Score=49.25  Aligned_cols=41  Identities=32%  Similarity=0.383  Sum_probs=34.8

Q ss_pred             ecCCcEEEEEEeeee-eCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          12 LEDGMISELGIANVL-RQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~-~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ...+..+.|.|.++. ..|.|.|+|.|.|..|.....+.|.|
T Consensus        59 ~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          59 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEEEEEEE
Confidence            346678899999998 57999999999999999888877765

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.92  E-value=1.1e-05  Score=49.13  Aligned_cols=41  Identities=32%  Similarity=0.368  Sum_probs=36.2

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      .+..++|.|.++...|.|.|+|.|.|..|.....+.|.+..
T Consensus        57 ~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          57 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEEEE
Confidence            45677999999999999999999999999988888887753

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.3e-06  Score=55.23  Aligned_cols=54  Identities=35%  Similarity=0.525  Sum_probs=44.5

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCC-CEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQD-SGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~-~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      .||.+......++..+.|.|.++...| .|.|+|.|.|..|.....+.|.+...+
T Consensus        54 ~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          54 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             eeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEECCC
Confidence            456666666666777889999999999 699999999999999888888876544

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1e-05  Score=50.11  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=37.8

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETPE   57 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P~   57 (273)
                      ..+.|.|.++...|.|.|+|.|.|.+|.....+.+.+..+|.
T Consensus        61 ~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPF  102 (107)
T ss_dssp             EEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTT
T ss_pred             cceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            356799999999999999999999999999999988888773

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1e-05  Score=48.33  Aligned_cols=39  Identities=33%  Similarity=0.320  Sum_probs=34.1

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .+..+.|.|.++..+|.|.|+|.|.|..|....++.+.+
T Consensus        51 ~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~V   89 (90)
T d1gsma1          51 DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV   89 (90)
T ss_dssp             ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEE
Confidence            445678999999999999999999999998888887765

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.80  E-value=1.6e-05  Score=47.63  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=35.5

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      ..+..+.|.|.++...|.|.|+|.|.|..|.....+.+.|.
T Consensus        50 ~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          50 TTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             ECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEECC
T ss_pred             eecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEEE
Confidence            35567889999999999999999999999998888777653

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.6e-05  Score=48.10  Aligned_cols=41  Identities=20%  Similarity=0.401  Sum_probs=33.1

Q ss_pred             ecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEE
Q psy6638          12 LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLV   52 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~   52 (273)
                      ...+...+|.|.++.++|.|.|+|.|.|..|...+ .+.|.|
T Consensus        54 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          54 SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             ETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEE
Confidence            33445668999999999999999999999998655 456655

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.3e-05  Score=47.16  Aligned_cols=38  Identities=26%  Similarity=0.425  Sum_probs=34.9

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      +|.|.++..+|.|.|+|.|.|..|.....+.+.|.+.|
T Consensus        46 ~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~~   83 (84)
T d2nxyb2          46 TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ   83 (84)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECCC
T ss_pred             eeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEecC
Confidence            69999999999999999999999999888888887765

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.74  E-value=3.6e-05  Score=45.75  Aligned_cols=34  Identities=35%  Similarity=0.414  Sum_probs=30.3

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .|.|.++.+.|.|.|+|.|.|..|.....+.+.|
T Consensus        55 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          55 GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            4999999999999999999999998877776654

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=97.73  E-value=3.1e-05  Score=47.98  Aligned_cols=39  Identities=38%  Similarity=0.411  Sum_probs=34.4

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      +...+.|.|.++...|.|.|+|.|.|..|.....+.|.|
T Consensus        70 ~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          70 DKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             TEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             cCCcEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            334678999999999999999999999999988887765

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=1.8e-05  Score=48.29  Aligned_cols=40  Identities=35%  Similarity=0.447  Sum_probs=34.7

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      +..+.|.|.++..+|.|.|+|.|.|..|.....+.+.+..
T Consensus        60 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          60 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            3456899999999999999999999999988888877753

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.2e-05  Score=46.83  Aligned_cols=40  Identities=25%  Similarity=0.238  Sum_probs=34.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      .+..+.|.|.++..+|.|.|+|.|.|..|.....+.+.+.
T Consensus        50 ~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            4456789999999999999999999999998888877653

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.70  E-value=3.8e-05  Score=45.64  Aligned_cols=35  Identities=40%  Similarity=0.629  Sum_probs=31.7

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      .|.|.++..+|.|.|+|.|.|..|.....+.+.|+
T Consensus        54 ~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          54 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEE
Confidence            69999999999999999999999988888777764

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.69  E-value=2.1e-05  Score=47.01  Aligned_cols=36  Identities=31%  Similarity=0.439  Sum_probs=32.1

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      ..|.|.++..+|.|.|+|.|.|..|.....+.+.|.
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          55 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             SEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            379999999999999999999999998887777664

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=6.1e-05  Score=44.88  Aligned_cols=41  Identities=27%  Similarity=0.308  Sum_probs=33.3

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCce-eEEEEEEe
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQ   53 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~-~~~~~~~~   53 (273)
                      .......|.|.++.++|.|.|+|.|.|..|... ..+.+.++
T Consensus        49 ~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          49 EQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             TTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             ccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            344567899999999999999999999999764 36777664

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=5.4e-05  Score=44.92  Aligned_cols=34  Identities=35%  Similarity=0.424  Sum_probs=31.1

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .|.|.++..+|.|.|+|.|.|..|.....+.+.|
T Consensus        55 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          55 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            7999999999999999999999998887777765

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=97.62  E-value=2.2e-05  Score=47.60  Aligned_cols=36  Identities=28%  Similarity=0.381  Sum_probs=32.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .++|.|.++...|.|.|+|.|.|..|.....+.+.|
T Consensus        61 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   96 (97)
T d3dara1          61 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   96 (97)
T ss_dssp             GTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            348999999999999999999999999888877765

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=3.4e-05  Score=46.61  Aligned_cols=40  Identities=28%  Similarity=0.370  Sum_probs=34.3

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEecCCC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQETPE   57 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~~P~   57 (273)
                      .+|.|.++..+|.|.|+|.|.|..|...+ .+.|.+..+|.
T Consensus        56 ~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~Ps   96 (96)
T d1l6za2          56 SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPS   96 (96)
T ss_dssp             TEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSCC
T ss_pred             eEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCCC
Confidence            47999999999999999999999998754 67888877663

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.56  E-value=0.00013  Score=44.06  Aligned_cols=39  Identities=31%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCCCce-eEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLV   52 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~-~~~~~~~   52 (273)
                      .+..++|.|.++..+|.|.|+|.|.|..|... +.+.+.+
T Consensus        56 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V   95 (97)
T d1epfa1          56 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI   95 (97)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEE
T ss_pred             cCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEE
Confidence            34567899999999999999999999998643 4566554

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.50  E-value=5.1e-05  Score=45.89  Aligned_cols=38  Identities=24%  Similarity=0.333  Sum_probs=31.8

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEE
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLV   52 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~   52 (273)
                      ...++|.|.++.++|.|.|+|.|.|..|...+ ++.+.|
T Consensus        58 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~V   96 (97)
T d1biha3          58 TSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV   96 (97)
T ss_dssp             STTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEE
T ss_pred             cCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEE
Confidence            34468999999999999999999999998754 666655

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=4.2e-05  Score=45.42  Aligned_cols=41  Identities=24%  Similarity=0.367  Sum_probs=34.0

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCce-eEEEEEEecCC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAE-MTIQLLVQETP   56 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~-~~~~~~~~~~P   56 (273)
                      ....|.|.++..+|.|.|+|.|.|..|... ..+.+.|..+|
T Consensus        47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          47 ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP   88 (89)
T ss_dssp             CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCC
Confidence            445799999999999999999999877654 36778887776

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00013  Score=44.57  Aligned_cols=38  Identities=26%  Similarity=0.296  Sum_probs=31.2

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEe
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQ   53 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~   53 (273)
                      ....|.|.++..+|.|.|+|.|.|..|...+ .+.+.+.
T Consensus        63 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          63 SFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             eEEEEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEE
Confidence            4567999999999999999999999987654 5666553

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.38  E-value=5.7e-05  Score=44.71  Aligned_cols=39  Identities=15%  Similarity=0.152  Sum_probs=31.5

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEec
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQE   54 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~~   54 (273)
                      ....|.|.++..+|.|.|+|.|.|..|...+ .+.+.|..
T Consensus        47 ~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~   86 (88)
T d2fcba2          47 SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQA   86 (88)
T ss_dssp             SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECC
T ss_pred             cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeC
Confidence            4457999999999999999999999886543 56666654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00017  Score=44.52  Aligned_cols=39  Identities=31%  Similarity=0.252  Sum_probs=31.4

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCcee--EEEEEEec
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEM--TIQLLVQE   54 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~--~~~~~~~~   54 (273)
                      ..+.|.|.++.++|.|.|+|.|.|..|....  .+.+.+..
T Consensus        65 ~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          65 KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             cccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEEEEe
Confidence            3447999999999999999999999998765  45555543

>d1f6fb1 b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=0.0021  Score=38.28  Aligned_cols=87  Identities=15%  Similarity=0.224  Sum_probs=56.0

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEE-ecCCcccEEEc--CCCCccc
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVE-LDNQYEGELRI--PGLTPYT  234 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i--~~L~p~~  234 (273)
                      .|.++....  .....++.+|++....   ..-..|.+.|+......       +.... .......+..+  ..+....
T Consensus         2 kP~~~sC~s--~~~~~~~C~W~~G~~t---~L~T~Y~l~~~~~~~~~-------~~eCp~y~~~~~~~C~f~~~~~~~~~   69 (96)
T d1f6fb1           2 KPEIHKCRS--PDKETFTCWWNPGTDG---GLPTNYSLTYSKEGEKT-------TYECPDYKTSGPNSCFFSKQYTSIWK   69 (96)
T ss_dssp             CCEEEEEEB--SSSSCEEEEEECCCCT---TSCCEEEEEEEETTEEE-------EEECSCSSTTCTTEEEECTTTCCSSC
T ss_pred             CCeEeEEEe--CCCCEEEEEeeCCCcC---CcCceEEEEEEecCCCc-------cccCCcccCCCceeEEECCccCccce
Confidence            577887776  6777899999997652   22367999998654321       11211 11122344444  5567788


Q ss_pred             eEEEEEEEecCCCcCCCCccEEE
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIA  257 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~  257 (273)
                      .|.|.|.|.|..|.. .|+++.+
T Consensus        70 ~y~i~V~a~N~LG~~-~Sd~l~~   91 (96)
T d1f6fb1          70 IYIITVNATNQMGSS-SSDPLYV   91 (96)
T ss_dssp             EEEEEEEEEETTEEE-ECCCEEE
T ss_pred             EEEEEEEEEcCCCCc-ccccEEE
Confidence            999999999999965 4554443

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=0.00023  Score=45.15  Aligned_cols=40  Identities=25%  Similarity=0.324  Sum_probs=34.9

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQETP   56 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~P   56 (273)
                      ..+|.|.+++..|+|.|+|.+.+..|.....+.|.|..|+
T Consensus        80 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          80 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             eEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence            5789999999999999999999988777778888887654

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00034  Score=41.36  Aligned_cols=38  Identities=21%  Similarity=0.207  Sum_probs=29.5

Q ss_pred             ecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEe
Q psy6638          12 LEDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQ   53 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~   53 (273)
                      ..++..++|.|.++.++|.|.|+|.|.|.    ..++.+.++
T Consensus        51 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~a~l~V~   88 (90)
T d1x44a1          51 RVEGKKHILIIEGATKADAAEYSVMTTGG----QSSAKLSVD   88 (90)
T ss_dssp             EEETTEEEEEEEEECTTTCSEEEEEETTE----EEEEEEEEE
T ss_pred             EEeCCccEEEECccccccCEEEEEEEecc----eEEEEEEEE
Confidence            34677889999999999999999998763    344555553

>d2qfra1 b.1.12.1 (A:9-120) Purple acid phosphatase, N-terminal domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.21  E-value=0.0032  Score=38.64  Aligned_cols=83  Identities=22%  Similarity=0.316  Sum_probs=46.8

Q ss_pred             CCcceEEEEe--eccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEe--------cCCccEEEecCCCCCCeE
Q psy6638          58 APKNIRITEE--SSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIV--------PGSQTSATLQPLLPATQY  127 (273)
Q Consensus        58 ~p~~~~~~~~--~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~y  127 (273)
                      +|..+.+...  ..+++.|+|........+.    |+|................        ......+.|.+|.|++.|
T Consensus        18 ~P~qvhlt~~~~~~tsm~VsW~T~~~~~~~~----V~yg~~~~~~~~~a~~~~~~~~~~~~~~~~~h~v~Lt~L~P~T~Y   93 (112)
T d2qfra1          18 APQQVHITQGDLVGRAMIISWVTMDEPGSSA----VRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKY   93 (112)
T ss_dssp             CCEEEEEEECSSSSSCEEEEEEESSSCCCCE----EEEEESSSCCCEEEECEEECCBCSSCBCCEEEEEEECSCCTTCEE
T ss_pred             CCccEEEeCcCCCCCEEEEEEECCCCCCCcE----EEEEECCCCCCcEEEEEEEEEEecccCCcEEEEEEECCCCCCCEE
Confidence            5776666543  3578999998653333333    3333332211101100000        012246789999999999


Q ss_pred             EEEEEEeCCCCCCCCCcceEEEe
Q psy6638         128 QVRLLAENPLGMSETGAELQAST  150 (273)
Q Consensus       128 ~~~v~a~~~~g~~~~s~~~~~~~  150 (273)
                      .|+|      |.+.++....|+|
T Consensus        94 ~YrV------G~~~~S~~~~F~T  110 (112)
T d2qfra1          94 YYEV------GLRNTTRRFSFIT  110 (112)
T ss_dssp             EEEE------CCSSSCEEEEEEC
T ss_pred             EEEE------CCCCceeeEEEEc
Confidence            9998      2234677778887

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00018  Score=43.64  Aligned_cols=36  Identities=22%  Similarity=0.240  Sum_probs=33.2

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      .|.|.++..+|.|.|+|.+.|..|.....+.+.|..
T Consensus        60 ~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~   95 (101)
T d1iray1          60 KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE   95 (101)
T ss_dssp             EEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEeccceecCCEEEEEEEECCCCeEEEEEEEEEEe
Confidence            799999999999999999999999998888888764

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.00024  Score=43.18  Aligned_cols=34  Identities=18%  Similarity=0.437  Sum_probs=29.9

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      +|.|.++..+|.|.|+|.|.|..|.....+.+.+
T Consensus        66 tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v   99 (102)
T d1f97a1          66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL   99 (102)
T ss_dssp             EEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEE
T ss_pred             EEEEeECCccCCEEEEEEEEECCCCEEEEEEEEE
Confidence            6999999999999999999999999877665544

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00017  Score=42.15  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             EEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEec
Q psy6638          20 LGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQE   54 (273)
Q Consensus        20 l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~   54 (273)
                      +.+.+++..|.|.|+|.|.|..|.....+.+.+..
T Consensus        49 ~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~   83 (84)
T d2oz4a3          49 GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS   83 (84)
T ss_dssp             TSCEECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eeeeccccCCCCEEEEEEEcCCCEEEEEEEEEEEC
Confidence            34667889999999999999999888788777754

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00023  Score=41.68  Aligned_cols=49  Identities=18%  Similarity=0.081  Sum_probs=33.5

Q ss_pred             eeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEE
Q psy6638           4 RYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLV   52 (273)
Q Consensus         4 r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~   52 (273)
                      +|......+.......+.|.....+|.|.|+|.|.|..|...+ .+.+.+
T Consensus        35 ~W~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          35 VWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             EEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEECCEECCCCCCcceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEE
Confidence            4544444444454456677777788999999999999996543 455543

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=5.4e-05  Score=45.27  Aligned_cols=39  Identities=28%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             cCCcEEEEEEeeeeeCCCE-EEEEEEEcCCCCceeEEEEE
Q psy6638          13 EDGMISELGIANVLRQDSG-TLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~-~y~~~a~n~~g~~~~~~~~~   51 (273)
                      .......|.|.++..+|.| .|+|.|.|..|.....+.+.
T Consensus        51 ~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~   90 (92)
T d2ifga1          51 GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN   90 (92)
T ss_dssp             CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCC
T ss_pred             eeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEE
Confidence            3455678999999999999 69999999999987776654

>d2hyma1 b.1.2.1 (A:1-109) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-alpha/beta receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0061  Score=37.01  Aligned_cols=89  Identities=17%  Similarity=0.166  Sum_probs=54.2

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeE-EecCCcccEEEcCC--CCccc
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSV-ELDNQYEGELRIPG--LTPYT  234 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~--L~p~~  234 (273)
                      .|.++++..   -.-.-.|.|++...   ...-..|.|+|+..+...      .|... .........+.|.+  +.+..
T Consensus        10 ~P~nv~i~s---~Nf~~iL~W~p~~~---s~~~~~YtVqy~~~~~~~------~W~~v~~C~~it~t~CDLT~e~~~~~~   77 (109)
T d2hyma1          10 ESCTFKISL---RNFRSILSWELKNH---SIVPTHYTLLYTIMSKPE------DLKVVKNCANTTRSFCDLTDEWRSTHE   77 (109)
T ss_dssp             CCCEEEEEE---SSSCEEEEEECCCS---SCCCCEEEEEEEETTCTT------CCEECSSSSSBSCSEEECTTTCCCSSS
T ss_pred             CCeeEEEEE---ECCceEEEECCCCC---CCCCeEEEEEEEEEcccc------cCccchhhhCCCCCeEeCchhhccCCc
Confidence            567888866   45567899999765   334568999998654321      11111 11222345677665  45677


Q ss_pred             eEEEEEEEecCCCcCCCCccEEEEc
Q psy6638         235 KYAIVVRGYNSVGKGPFSEPFIART  259 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s~~~~~~t  259 (273)
                      .|.+||+|..... ..++....|..
T Consensus        78 ~Y~~RV~A~~G~~-t~~~~s~~f~p  101 (109)
T d2hyma1          78 AYVTVLEGFSGNT-TLFSCSHNFWL  101 (109)
T ss_dssp             CEEEEEEEEETTE-EEECCEEEECT
T ss_pred             cEEEEEEEEcCCc-cceeEeccccc
Confidence            8999999996432 23554455543

>d2hyma1 b.1.2.1 (A:1-109) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-alpha/beta receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0015  Score=39.78  Aligned_cols=77  Identities=13%  Similarity=0.094  Sum_probs=51.5

Q ss_pred             CCCCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCC--CCCCCccceEEecCCccEEEecC--CCCCCeEEEEE
Q psy6638          56 PEAPKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSE--EMWPTQPLKIIVPGSQTSATLQP--LLPATQYQVRL  131 (273)
Q Consensus        56 P~~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~y~~~v  131 (273)
                      +..|.++++.+. +-.-.|.|.+... ...-..|.|+|+..+  ..|.....+...  ..+.+.+..  +.+...|.+||
T Consensus         8 ~~~P~nv~i~s~-Nf~~iL~W~p~~~-s~~~~~YtVqy~~~~~~~~W~~v~~C~~i--t~t~CDLT~e~~~~~~~Y~~RV   83 (109)
T d2hyma1           8 TDESCTFKISLR-NFRSILSWELKNH-SIVPTHYTLLYTIMSKPEDLKVVKNCANT--TRSFCDLTDEWRSTHEAYVTVL   83 (109)
T ss_dssp             TTCCCEEEEEES-SSCEEEEEECCCS-SCCCCEEEEEEEETTCTTCCEECSSSSSB--SCSEEECTTTCCCSSSCEEEEE
T ss_pred             CCCCeeEEEEEE-CCceEEEECCCCC-CCCCeEEEEEEEEEcccccCccchhhhCC--CCCeEeCchhhccCCccEEEEE
Confidence            346777776663 5566899998643 334468999998643  457754444333  456777754  45677899999


Q ss_pred             EEeCC
Q psy6638         132 LAENP  136 (273)
Q Consensus       132 ~a~~~  136 (273)
                      +|..+
T Consensus        84 ~A~~G   88 (109)
T d2hyma1          84 EGFSG   88 (109)
T ss_dssp             EEEET
T ss_pred             EEEcC
Confidence            99864

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.0002  Score=43.94  Aligned_cols=35  Identities=31%  Similarity=0.498  Sum_probs=31.1

Q ss_pred             EEEEEEeeeeeCCCE-EEEEEEEcCCCCceeEEEEE
Q psy6638          17 ISELGIANVLRQDSG-TLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~-~y~~~a~n~~g~~~~~~~~~   51 (273)
                      .+.|.|.++.++|.| .|+|.|.|.+|...+.+.|.
T Consensus        69 ~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          69 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EEEEEESSCCGGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             eEEEEEeecchHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            468999999999999 59999999999988877765

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.02  E-value=0.00058  Score=41.05  Aligned_cols=34  Identities=32%  Similarity=0.500  Sum_probs=28.4

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCcee--EEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEM--TIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~--~~~~~~   52 (273)
                      .|.|.+++.+|.|.|+|.+.+..|....  .+.|.|
T Consensus        61 SL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V   96 (98)
T d1hnga1          61 DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI   96 (98)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEE
T ss_pred             cEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEE
Confidence            6999999999999999999999888643  555544

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.00  E-value=0.00017  Score=42.67  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=29.4

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEEEEe
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEM-TIQLLVQ   53 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~~~~   53 (273)
                      ...|.|.++.++|.|.|+|.|.|..|...+ .+.+.|.
T Consensus        50 ~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~   87 (89)
T d1fnla2          50 NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT   87 (89)
T ss_dssp             CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEE
Confidence            347999999999999999999998876543 5566554

>d2c4fu1 b.1.2.1 (U:91-210) Extracellular region of human tissue factor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00069  Score=42.03  Aligned_cols=69  Identities=14%  Similarity=0.088  Sum_probs=45.4

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCc-cc----------eeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEE
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESW-NG----------VLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGEL  225 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~-~~----------~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (273)
                      +|| .+.+..  ....++.|.-.+|..... ++          .-..|.|.|+..+...         .      ....+
T Consensus        19 GPP-~v~~~~--~~~~sl~V~i~~P~t~~~~~~~~~~~~d~~~~~l~Y~V~~w~~~s~~---------~------~~~~~   80 (116)
T d2c4fu1          19 GQP-TIQSFE--QVGTKVNVTVEDERTLVRRNNTFLSLRDVFGKDLIYTLYYWSGKKTA---------K------TNTNE   80 (116)
T ss_dssp             CCC-CEEEEE--EETTEEEEEECCCEEEEESSSCEEEHHHHHGGGCEEEEEECCCCEEE---------E------ESSSE
T ss_pred             CCc-eEEEEe--cCCCEEEEEEeCCCCcccCCCceeehhhhccCCcEEEEEEEECCceE---------E------EeeeE
Confidence            344 455434  355689998888752100 11          1358999999765321         1      12467


Q ss_pred             EcCCCCccceEEEEEEEe
Q psy6638         226 RIPGLTPYTKYAIVVRGY  243 (273)
Q Consensus       226 ~i~~L~p~~~Y~~~v~a~  243 (273)
                      .|.+|.|++.|-|+|+|.
T Consensus        81 ~l~~L~p~t~YCv~Vqa~   98 (116)
T d2c4fu1          81 FLIDVDKGENYCFSVQAV   98 (116)
T ss_dssp             EEEECCTTCCCEEEEEEE
T ss_pred             EEeCCCCCCcEEEEEEEE
Confidence            899999999999999998

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00022  Score=43.59  Aligned_cols=34  Identities=21%  Similarity=0.475  Sum_probs=29.8

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      +|.|.++..+|.|.|+|.|.|..|.....+.+.+
T Consensus        69 ~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EEECSCCCTTSCSEEEEEEEETTSSCEECCEEEC
T ss_pred             eEEEecccccceeeEEEEEEECCCCEEEEEEEEE
Confidence            6999999999999999999999999877655543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00034  Score=41.57  Aligned_cols=30  Identities=27%  Similarity=0.321  Sum_probs=26.1

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTI   48 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~   48 (273)
                      .|.|.++.++|.|.|+|.|.|..|......
T Consensus        51 ~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1          51 NLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             CEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             EEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            599999999999999999999888765433

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=96.96  E-value=0.00015  Score=42.92  Aligned_cols=36  Identities=28%  Similarity=0.208  Sum_probs=28.7

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      +||.+.    .++..++|.|.++.+.|.|.|+|.|.|..+
T Consensus        45 ~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~   80 (89)
T d1tiua_          45 PDCEII----EDGKKHILILHNCQLGMTGEVSFQAANAKS   80 (89)
T ss_dssp             SSCEEE----ECSSCEEEECCSCCSCCCSEECCBCSSCBC
T ss_pred             eeEEEE----eeceeEEEEEcCCChhcCEEEEEEECceEE
Confidence            455443    467788999999999999999999877543

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00086  Score=40.68  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=24.2

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCce
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAE   45 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~   45 (273)
                      .|.|.++..+|.|.|+|.|.|..|...
T Consensus        59 ~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2          59 RLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             EEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             EEEEcccccccCcEEEEEEEECcCCEE
Confidence            699999999999999999999877543

>d2hfta1 b.1.2.1 (A:1-106) Extracellular region of human tissue factor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0076  Score=36.36  Aligned_cols=76  Identities=14%  Similarity=0.205  Sum_probs=53.2

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecC-C--CCCCeEEEEEEEe
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP-L--LPATQYQVRLLAE  134 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l--~~~~~y~~~v~a~  134 (273)
                      .|.++++.+. +-...|.|.++.    .-..|.|+++..++.|..    .+.+...+.+.|.+ +  .....|.+||+|.
T Consensus         8 ~p~NV~~~S~-Nf~~iL~W~p~~----~~~~YtVqy~~~~~~W~~----~C~nit~~~CDlt~~~~~d~~~~Y~aRVrA~   78 (106)
T d2hfta1           8 AAYNLTWKST-NFKTILEWEPKP----VNQVYTVQISTKSGDWKS----KCFYTTDTECDLTDEIVKDVKQTYLARVFSY   78 (106)
T ss_dssp             CCEEEEEEEE-TTEEEEEEECCC----SSEEEEEEEEETTSCCEE----EEEEESCSEEECHHHHGGGTTSCEEEEEEEE
T ss_pred             cceEEEEEEE-cCeEEEEECCCC----CCEEEEEEEEEcCCchhh----cccCcCccccccccccccCCCCCEEEEEEEE
Confidence            5677777664 566789999753    235799999988888873    23444667788754 2  3567899999998


Q ss_pred             CCCCCCCC
Q psy6638         135 NPLGMSET  142 (273)
Q Consensus       135 ~~~g~~~~  142 (273)
                      ...+.+.+
T Consensus        79 ~~~~~S~~   86 (106)
T d2hfta1          79 PAGNVEST   86 (106)
T ss_dssp             ECSSCCCC
T ss_pred             cCCCcccc
Confidence            76665543

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.87  E-value=0.00018  Score=44.11  Aligned_cols=30  Identities=30%  Similarity=0.356  Sum_probs=26.8

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTI   48 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~   48 (273)
                      +|.|.++.++|.|.|+|.|.|..|.....+
T Consensus        62 ~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v   91 (105)
T d1cs6a2          62 NLYIAKTEASDLGNYSCFATSHIDFITKSV   91 (105)
T ss_dssp             CEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             EEeecccccccCcEEEEEEEECCCCEEEEE
Confidence            699999999999999999999998876543

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.84  E-value=0.00056  Score=40.59  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=27.0

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEE
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYHGTAEMTIQLL   51 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~   51 (273)
                      .|.|.++.+.|.|.|+|.|.|..|.......+.
T Consensus        57 ~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~   89 (92)
T d1epfa2          57 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ   89 (92)
T ss_dssp             CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEE
T ss_pred             eEEECCCCHHhCEEEEEEEEECcCCEEEEEEEE
Confidence            599999999999999999999876655544443

>d1xzwa1 b.1.12.1 (A:1-119) Purple acid phosphatase, N-terminal domain {Sweet potato (Ipomoea batatas) [TaxId: 4120]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Sweet potato (Ipomoea batatas) [TaxId: 4120]

Probab=96.83  E-value=0.01  Score=36.73  Aligned_cols=84  Identities=24%  Similarity=0.376  Sum_probs=46.5

Q ss_pred             CCCcceEEEEe--eccEEEEEEeCCCC-CCccceEEEEEEEeCCCCCCCccc--eEE------ecCCccEEEecCCCCCC
Q psy6638          57 EAPKNIRITEE--SSRSLQISWTAPYS-GNTAITQYIIQYKSSEEMWPTQPL--KII------VPGSQTSATLQPLLPAT  125 (273)
Q Consensus        57 ~~p~~~~~~~~--~~~~~~l~W~~~~~-~~~~~~~y~v~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~l~~~~  125 (273)
                      .+|..+.+.-.  ..+++.|+|..... ....    .|+|-...........  ...      .......+.|.+|.|++
T Consensus        23 ~~P~qvhl~~~~~~~tsm~VsW~T~~~~~~~~----~V~yG~~~~~~~~~a~g~s~~~~~~~~~~~~~H~v~LtgL~P~T   98 (119)
T d1xzwa1          23 NAPQQVHITQGDYEGRGVIISWTTPYDKAGAN----KVFYWSENSKSQKRAMGTVVTYKYYNYTSAFIHHCTIKDLEYDT   98 (119)
T ss_dssp             TCCEEEEEEECSSSSSCEEEEEEESSCCTTTT----EEEEEETTCCCCEEEECEEECCEETTEECCEEEEEEECCCCTTC
T ss_pred             CCCCEEEEEecCCCCCEEEEEEECCCCCCCCC----EEEEcCCCCCCccEEEEEEEEeecccccCCeEEEEEECCCCCCC
Confidence            35665555543  35789999996432 2222    3455443322111110  000      11122468899999999


Q ss_pred             eEEEEEEEeCCCCCCCCCcceEEEe
Q psy6638         126 QYQVRLLAENPLGMSETGAELQAST  150 (273)
Q Consensus       126 ~y~~~v~a~~~~g~~~~s~~~~~~~  150 (273)
                      .|.|+|-      .+.++....|+|
T Consensus        99 ~Y~YrVG------~~~~S~~~~F~T  117 (119)
T d1xzwa1          99 KYYYRLG------FGDAKRQFWFVT  117 (119)
T ss_dssp             EEEEEEC------CGGGCEEEEEEC
T ss_pred             EEEEEEC------CCCccceEEEeC
Confidence            9999983      223566677776

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0003  Score=41.90  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=25.8

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMT   47 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~   47 (273)
                      ..+|.|.++.++|.|.|+|.+.|..++....
T Consensus        59 ~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~~~   89 (93)
T d1ccza1          59 SGSLTIYNLTSSDEDEYEMESPNITDTMKFF   89 (93)
T ss_dssp             TCCEEECSCCGGGCEEEEEECTTCCSCEEEE
T ss_pred             eeEEEEEecChhhCEEEEEEEECCCcEEEEE
Confidence            4579999999999999999998877655433

>d1f6fb1 b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.80  E-value=0.0014  Score=39.05  Aligned_cols=80  Identities=19%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCC-CCCCccceEEecCCccEEEe--cCCCCCCeEEEEEEEe
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEE-MWPTQPLKIIVPGSQTSATL--QPLLPATQYQVRLLAE  134 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~l~~~~~y~~~v~a~  134 (273)
                      .|+++.........++++|++..... .-..|.+.++.... .|......  .......+.+  ..+.....|.|.|.|.
T Consensus         2 kP~~~sC~s~~~~~~~C~W~~G~~t~-L~T~Y~l~~~~~~~~~~~eCp~y--~~~~~~~C~f~~~~~~~~~~y~i~V~a~   78 (96)
T d1f6fb1           2 KPEIHKCRSPDKETFTCWWNPGTDGG-LPTNYSLTYSKEGEKTTYECPDY--KTSGPNSCFFSKQYTSIWKIYIITVNAT   78 (96)
T ss_dssp             CCEEEEEEBSSSSCEEEEEECCCCTT-SCCEEEEEEEETTEEEEEECSCS--STTCTTEEEECTTTCCSSCEEEEEEEEE
T ss_pred             CCeEeEEEeCCCCEEEEEeeCCCcCC-cCceEEEEEEecCCCccccCCcc--cCCCceeEEECCccCccceEEEEEEEEE
Confidence            46777777667778999999865433 23579998876432 22111110  1122234444  4566778999999999


Q ss_pred             CCCCCC
Q psy6638         135 NPLGMS  140 (273)
Q Consensus       135 ~~~g~~  140 (273)
                      |..|..
T Consensus        79 N~LG~~   84 (96)
T d1f6fb1          79 NQMGSS   84 (96)
T ss_dssp             ETTEEE
T ss_pred             cCCCCc
Confidence            998843

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=96.78  E-value=0.00037  Score=41.55  Aligned_cols=29  Identities=24%  Similarity=0.337  Sum_probs=25.8

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~   46 (273)
                      .+|.|.++..+|.|.|+|.|.|..|...+
T Consensus        58 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s   86 (94)
T d1biha1          58 GSLVFLRPQASDEGHYQCFAETPAGVASS   86 (94)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             eEEEEeccChhcCeEEEEEEEeCCCEEEE
Confidence            36999999999999999999999997543

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00011  Score=44.84  Aligned_cols=32  Identities=31%  Similarity=0.336  Sum_probs=28.1

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTI   48 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~   48 (273)
                      .+.|.|.++..+|.|.|+|.|.|..|....+.
T Consensus        65 ~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~   96 (104)
T d1nbqa2          65 TGELVFDPLSASDTGEYSCEARNGYGTPMTSN   96 (104)
T ss_dssp             TCCEEESSCCGGGCCCEEEEEECSSSCCEECC
T ss_pred             ccceEECCCCcccCcEEEEEEEECCCceEEEE
Confidence            45799999999999999999999999886543

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0013  Score=39.93  Aligned_cols=40  Identities=5%  Similarity=-0.059  Sum_probs=32.2

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      .....+.|.|.....+|.|.|+|+|.|..|.....+.+.+
T Consensus        55 ~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~   94 (103)
T d1iama1          55 GEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENT   94 (103)
T ss_dssp             TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEE
T ss_pred             cccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeeeE
Confidence            3445678999999999999999999999998766665554

>d1a21a1 b.1.2.1 (A:4-106) Extracellular region of human tissue factor {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.76  E-value=0.013  Score=35.01  Aligned_cols=74  Identities=15%  Similarity=0.209  Sum_probs=50.6

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecC--CCC-CCeEEEEEEEe
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQP--LLP-ATQYQVRLLAE  134 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~~~y~~~v~a~  134 (273)
                      .|.|+++.+. +-...|.|+++.    .-..|.|+++..++.|..    .+.+...+.+.+.+  +.+ ...|.+||+|.
T Consensus         3 k~~NV~~~S~-Nf~~iL~W~p~~----~~~~YtVqy~~~~~~W~~----~C~nit~~~CDlt~~~~~~~~~~Y~aRVra~   73 (103)
T d1a21a1           3 RAYNLTWKST-NFKTILEWEPKS----IDHVYTVQISTRLENWKS----KCFLTAETECDLTDEVVKDVGQTYMARVLSY   73 (103)
T ss_dssp             CCEEEEEEEE-TTEEEEEEECCC----SSEEEEEEEECSSSCCEE----EEEEESSSEEECHHHHTTCTTSCBEEEEEEE
T ss_pred             CCEEEEEEEE-cCceEEEECCCC----CCeEEEEEEEecCCCccc----cccCcCcceecCcccccccCCCCEEEEEEEe
Confidence            4677777764 556789999753    235699999988778862    23444667788753  344 46799999998


Q ss_pred             CCCCCC
Q psy6638         135 NPLGMS  140 (273)
Q Consensus       135 ~~~g~~  140 (273)
                      ...+.+
T Consensus        74 ~~~~~s   79 (103)
T d1a21a1          74 PARNGN   79 (103)
T ss_dssp             ECCC--
T ss_pred             cCCCcc
Confidence            766544

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00095  Score=39.71  Aligned_cols=28  Identities=18%  Similarity=0.247  Sum_probs=24.5

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .++..++|.|.++...|.|.|+|.|.|.
T Consensus        57 ~~~~~~~L~I~~~~~~D~G~Y~c~a~n~   84 (94)
T d1pd6a_          57 SIGAKRTLTISQCSLADDAAYQCVVGGE   84 (94)
T ss_dssp             EETTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred             ccCCeEEeecCCCCceecEEEEEEEeeE
Confidence            3566889999999999999999999764

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=96.43  E-value=0.0038  Score=38.27  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=27.6

Q ss_pred             EEEEeeeeeCCCE---EEEEEEEcCCCCceeEEEEEE
Q psy6638          19 ELGIANVLRQDSG---TLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        19 ~l~i~~~~~~~~~---~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      +|.|.+++..|.|   .|.|.|.|..|.....+...+
T Consensus        64 ~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~~~~~~  100 (111)
T d1biha2          64 NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE  100 (111)
T ss_dssp             CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEE
T ss_pred             ccEEeeeEeeccCCceEEEEEEEeCCCCceEEEEEEE
Confidence            6999999988766   799999999998877654433

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.27  E-value=0.001  Score=39.83  Aligned_cols=33  Identities=30%  Similarity=0.384  Sum_probs=27.0

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCcee-EEEE
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTAEM-TIQL   50 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~~~-~~~~   50 (273)
                      ..|.|..+..+|.|.|+|.|.|..|...+ .+.|
T Consensus        62 ~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          62 DLVISNPVKAKDAGSYQCVATNARGTVVSREASL   95 (97)
T ss_dssp             EEEEESCCHHHHCEEEEEEEEETTEEEECCCEEE
T ss_pred             eEEEEecccccCCEEEEEEEEECCCEEEEEEEEE
Confidence            46888899999999999999999997643 4444

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0019  Score=40.44  Aligned_cols=36  Identities=28%  Similarity=0.452  Sum_probs=29.6

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEE
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLV   52 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~   52 (273)
                      ...|.|.+++.+|.|.|.|.+.+..|.....+.+.|
T Consensus        87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  122 (124)
T d1eaja_          87 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV  122 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEE
Confidence            457999999999999999999988776666666655

>d1a21a1 b.1.2.1 (A:4-106) Extracellular region of human tissue factor {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.13  E-value=0.021  Score=34.09  Aligned_cols=76  Identities=13%  Similarity=0.104  Sum_probs=47.8

Q ss_pred             CCCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCC--CCc-c
Q psy6638         157 GAPREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG--LTP-Y  233 (273)
Q Consensus       157 ~~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p-~  233 (273)
                      +.|.+|++..   ..-...|.|+++..      ...|.|+|...++.+ ..      .+.  ......+.|.+  |.+ .
T Consensus         2 ~k~~NV~~~S---~Nf~~iL~W~p~~~------~~~YtVqy~~~~~~W-~~------~C~--nit~~~CDlt~~~~~~~~   63 (103)
T d1a21a1           2 GRAYNLTWKS---TNFKTILEWEPKSI------DHVYTVQISTRLENW-KS------KCF--LTAETECDLTDEVVKDVG   63 (103)
T ss_dssp             CCCEEEEEEE---ETTEEEEEEECCCS------SEEEEEEEECSSSCC-EE------EEE--EESSSEEECHHHHTTCTT
T ss_pred             CCCEEEEEEE---EcCceEEEECCCCC------CeEEEEEEEecCCCc-cc------ccc--CcCcceecCcccccccCC
Confidence            4677888876   55677899998643      246999998765432 11      121  11235666653  334 4


Q ss_pred             ceEEEEEEEecCCCcCC
Q psy6638         234 TKYAIVVRGYNSVGKGP  250 (273)
Q Consensus       234 ~~Y~~~v~a~n~~g~~~  250 (273)
                      ..|.+||+|....+.+.
T Consensus        64 ~~Y~aRVra~~~~~~s~   80 (103)
T d1a21a1          64 QTYMARVLSYPARNGNT   80 (103)
T ss_dssp             SCBEEEEEEEECCC--C
T ss_pred             CCEEEEEEEecCCCccc
Confidence            57999999998766553

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0023  Score=36.82  Aligned_cols=28  Identities=29%  Similarity=0.388  Sum_probs=23.8

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGTA   44 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~~   44 (273)
                      ...|.|.++..+|.|.|+|.|.|..++.
T Consensus        47 ~~~l~i~~v~~~d~G~Y~C~a~~s~~S~   74 (82)
T d1f2qa1          47 NSSLNIVNAKFEDSGEYKCQHQQVNESE   74 (82)
T ss_dssp             SSEEEECSCCGGGCEEEEEECTTSSCCC
T ss_pred             cceeEECCCChhhCCcEEEEecCCCCcc
Confidence            4579999999999999999998865544

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.001  Score=40.71  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=28.3

Q ss_pred             eEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638           5 YTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus         5 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      |.-|..+..++   .|.|.+++.+|.|.|+|.+.+..+
T Consensus        61 y~gR~~l~~ng---SL~I~~v~~~D~G~Y~c~v~~~~~   95 (107)
T d1l6za1          61 YSGREIIYSNG---SLLFQMITMKDMGVYTLDMTDENY   95 (107)
T ss_dssp             CCSSEEECTTS---CEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ceeEEEEcccc---cEEEcCCCchhCEEEEEEEEECCC
Confidence            44466666676   799999999999999999987643

>d2hfta1 b.1.2.1 (A:1-106) Extracellular region of human tissue factor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.023  Score=34.19  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=50.0

Q ss_pred             CCeeEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCccceeeeeeeEEecCCcccEEEcCC-C--Cccc
Q psy6638         158 APREVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSLALSSYTLKSVELDNQYEGELRIPG-L--TPYT  234 (273)
Q Consensus       158 ~p~~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-L--~p~~  234 (273)
                      .|.+|++..   ..-.-.|.|+++..      ...|.|+|+..++.+. .      .+..  .....+.|.+ +  ....
T Consensus         8 ~p~NV~~~S---~Nf~~iL~W~p~~~------~~~YtVqy~~~~~~W~-~------~C~n--it~~~CDlt~~~~~d~~~   69 (106)
T d2hfta1           8 AAYNLTWKS---TNFKTILEWEPKPV------NQVYTVQISTKSGDWK-S------KCFY--TTDTECDLTDEIVKDVKQ   69 (106)
T ss_dssp             CCEEEEEEE---ETTEEEEEEECCCS------SEEEEEEEEETTSCCE-E------EEEE--ESCSEEECHHHHGGGTTS
T ss_pred             cceEEEEEE---EcCeEEEEECCCCC------CEEEEEEEEEcCCchh-h------cccC--cCccccccccccccCCCC
Confidence            678999876   55677899998643      2469999988765431 1      1211  1235666654 2  2456


Q ss_pred             eEEEEEEEecCCCcCCCC
Q psy6638         235 KYAIVVRGYNSVGKGPFS  252 (273)
Q Consensus       235 ~Y~~~v~a~n~~g~~~~s  252 (273)
                      .|.+||+|....+.+.++
T Consensus        70 ~Y~aRVrA~~~~~~S~~~   87 (106)
T d2hfta1          70 TYLARVFSYPAGNVESTG   87 (106)
T ss_dssp             CEEEEEEEEECSSCCCC-
T ss_pred             CEEEEEEEEcCCCccccc
Confidence            899999999876666544

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=95.94  E-value=0.0026  Score=36.77  Aligned_cols=27  Identities=22%  Similarity=0.167  Sum_probs=23.0

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCCCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYHGT   43 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~g~   43 (273)
                      ..+|.|.++..+|.|.|+|.|.|..++
T Consensus        51 ~~~l~i~~~~~~d~G~Y~C~a~~s~~S   77 (84)
T d1fnla1          51 ASSYFIDAATVNDSGEYRCQTNLSTLS   77 (84)
T ss_dssp             CSEEEESSCCGGGCEEEEEECSSSCCC
T ss_pred             ceeeEecCCcccCCEEEEEEccCCCcc
Confidence            347999999999999999999876544

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=95.75  E-value=0.0035  Score=36.31  Aligned_cols=29  Identities=14%  Similarity=0.067  Sum_probs=24.1

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTA   44 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~   44 (273)
                      ....|.|.++..+|.|.|+|.|.|..++.
T Consensus        49 ~~~~l~i~~v~~~dsG~Y~C~a~ns~~S~   77 (85)
T d2fcba1          49 HTQPSYRFKANNNDSGEYTCQTGQTSLSD   77 (85)
T ss_dssp             CCSSEEEEECCGGGCEEEEEECTTSBCCC
T ss_pred             cccceEEeeccccCCcEEEEECCCCcccc
Confidence            34579999999999999999998865544

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.02  Score=35.09  Aligned_cols=43  Identities=21%  Similarity=0.212  Sum_probs=30.0

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEEEEecC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNYHGTAEMTIQLLVQET   55 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~~~~~~   55 (273)
                      .......|.|.++.++|.|.|.|.+..........+.+.|...
T Consensus        69 ~~~~~~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          69 PENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             CCCCEEEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEEECC
Confidence            3455678999999999999999987543322333556666543

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0052  Score=36.24  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             EEEEeeeeeCCCEEEEEEEEcCC
Q psy6638          19 ELGIANVLRQDSGTLSCLATNYH   41 (273)
Q Consensus        19 ~l~i~~~~~~~~~~y~~~a~n~~   41 (273)
                      +|.|.++..+|.|.|+|.|.|..
T Consensus        61 ~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          61 RLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             EEEECSCCGGGCEEEEEESSSSC
T ss_pred             EEEECCCChhcCEEEEEEECCcc
Confidence            79999999999999999987654

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.056  Score=32.52  Aligned_cols=28  Identities=18%  Similarity=0.248  Sum_probs=24.0

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .......|.|.+++++|.|.|.|.....
T Consensus        65 ~~~~~~~L~I~~l~~~DsG~Y~C~v~~~   92 (108)
T d1hkfa_          65 PDAGFFTVTMTDLREEDSGHYWCRIYRP   92 (108)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             CCCCEEEEEEhhhCCCCCEEEEEEEecC
Confidence            4556789999999999999999987743

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.04  Score=31.89  Aligned_cols=35  Identities=14%  Similarity=0.273  Sum_probs=30.2

Q ss_pred             EEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCCCCcee
Q psy6638           9 EQVLEDGMISELGIANVLRQDSGTLSCLATNYHGTAEM   46 (273)
Q Consensus         9 ~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~   46 (273)
                      ..++.+|   +|+|+++...|.|.|.+.+.+..|....
T Consensus        57 y~i~~nG---tLkIK~L~~~d~GtYkv~vYd~~Gk~vl   91 (101)
T d1hnfa1          57 YKLFKNG---TLKIKHLKTDDQDIYKVSIYDTKGKNVL   91 (101)
T ss_dssp             EEECTTS---CEEECSCCGGGCEEEEEEEEETTSCEEE
T ss_pred             EEEccCC---cEEeeeeeecCCCcEEEEEEcCCCcEee
Confidence            3456678   7999999999999999999999888654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.02  Score=34.41  Aligned_cols=27  Identities=26%  Similarity=0.441  Sum_probs=22.7

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638          18 SELGIANVLRQDSGTLSCLATNYHGTA   44 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~~g~~   44 (273)
                      .+|.|.+++++|+|.|.|.+.+..+..
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~V~~~~~~~   91 (105)
T d1dr9a1          65 LSIVILALRPSDEGTYECVVLKYEKDA   91 (105)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEECCTTS
T ss_pred             EEEEECcCChHHCeEEEEEEEeCCCCC
Confidence            579999999999999999987654443

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.022  Score=34.46  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             EEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          18 SELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        18 ~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        69 ~sL~I~~v~~~D~G~Y~C~V~~~   91 (110)
T d1ncna_          69 WTLRLHNLQIKDKGLYQCIIHHK   91 (110)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEEE
T ss_pred             EEEEECCCChhHCEEEEEEEEec
Confidence            47999999999999999998644

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.52  E-value=0.022  Score=34.98  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.0

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638          17 ISELGIANVLRQDSGTLSCLATNYH   41 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n~~   41 (273)
                      ...|.|.++...|+|.|.|.+.+..
T Consensus        80 ~~sL~I~~v~~~DsG~Y~C~v~~~~  104 (119)
T d1neua_          80 DGSIVIHNLDYSDNGTFTCDVKNPP  104 (119)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEC--
T ss_pred             EEEEEECCCChHHCEEEEEEEEECC
Confidence            3579999999999999999998744

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.31  E-value=0.076  Score=32.32  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=27.8

Q ss_pred             cceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638           2 FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus         2 ~~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      ++||.+.  ...++..+.|.|.+++++|.|.|.|.+...
T Consensus        59 ~~rf~~~--~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          59 DARFQII--QLPNRHDFHMNILDTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             CTTEEEE--ECTTSSEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             cCcceEE--EeCCCCEEEEEECccCcCCCeEEEEEEEeC
Confidence            3566543  233556788999999999999999987653

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.02  Score=34.49  Aligned_cols=35  Identities=14%  Similarity=0.038  Sum_probs=25.5

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCceeEEEE
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTAEMTIQL   50 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~~~~~~~   50 (273)
                      ..+.|.|.....+|.+.|+|+|.|..|.....+..
T Consensus        61 ~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~~~   95 (106)
T d1zxqa1          61 ATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFH   95 (106)
T ss_dssp             EEEEEEEECCGGGGGCEEEEEEEEECGGGTCCEEE
T ss_pred             eeEEEEEeeehhcCCcEEEEEEEecCCCCCCeeEe
Confidence            35567777777777889999999998765444433

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.29  Score=28.67  Aligned_cols=41  Identities=20%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             cCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEEEe
Q psy6638         110 PGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQAST  150 (273)
Q Consensus       110 ~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~~~  150 (273)
                      ......+.|.++.......|+|.|.|..|....+..+.+.-
T Consensus        52 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   92 (101)
T d2cqva1          52 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD   92 (101)
T ss_dssp             CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEEC
T ss_pred             ecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEe
Confidence            33455788999999999999999999988655444444443

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.037  Score=32.60  Aligned_cols=23  Identities=30%  Similarity=0.268  Sum_probs=20.5

Q ss_pred             EEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          17 ISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        17 ~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ..+|.|.+++++|.|.|.|.+.+
T Consensus        66 ~~sL~I~~l~~~DsG~Y~C~v~~   88 (97)
T d2nxyb1          66 NFPLIIKNLKIEDSDTYICEVED   88 (97)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETT
T ss_pred             EEEEEECCCChHHCEEEEEEEec
Confidence            45799999999999999999854

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.58  E-value=0.13  Score=31.06  Aligned_cols=28  Identities=14%  Similarity=0.306  Sum_probs=23.4

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .......|+|.+|+.+|.|.|.|.....
T Consensus        67 ~~~~~~~lti~~L~~eDsa~YyCa~~~~   94 (110)
T d1u9ka_          67 PSEAMLQVQMTDLQVTDSGLYRCVIYHP   94 (110)
T ss_dssp             GGGTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             CCCCEEEEEECccccCCCEEEEEEEeCC
Confidence            3456889999999999999999987543

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=93.29  E-value=0.061  Score=32.87  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=27.7

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYH   41 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~   41 (273)
                      +||+....  .....+.|.|.+++++|.|.|.|......
T Consensus        63 ~rf~~~~~--~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          63 GRFSVKHI--LTQKAFHLVISPVRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             TTEEEEEE--GGGTEEEEEESSCCGGGCEEEEEEEECTT
T ss_pred             eEEEEEec--CceeEEeeeecCccccccccceeeEecCC
Confidence            46665432  24456789999999999999999876543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.061  Score=31.53  Aligned_cols=29  Identities=14%  Similarity=0.049  Sum_probs=24.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      .+....|.|.++.+.|.|.|+|...+..+
T Consensus        53 ~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1          53 RINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             TCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            34567899999999999999999876543

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.056  Score=32.92  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=22.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .+....|.|.+++++|.|.|.|.+..
T Consensus        73 ~~~~~~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          73 LGDTFVLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCChhcEEccCCCCCCEEEeEeEcC
Confidence            45578999999999999999998764

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=93.14  E-value=0.11  Score=30.26  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=27.4

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      +||..+  ....+..+.|.|.+++++|.|.|.|.+...
T Consensus        44 ~rf~~~--~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1          44 GRFTAQ--LNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TTEEEE--EETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CcEEEE--ecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            455443  234566789999999999999999987653

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.16  Score=30.71  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=22.1

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ......|.|.+++++|.|.|.|.+..
T Consensus        72 ~~~~~~Lti~~l~~~Dsg~Y~Cav~~   97 (113)
T d1smoa_          72 DHGLLRVRMVNLQVEDSGLYQCVIYQ   97 (113)
T ss_dssp             TTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             CCCEEEEEEccCCcccCceEEEEEEC
Confidence            44567899999999999999997643

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=92.84  E-value=0.1  Score=31.70  Aligned_cols=32  Identities=13%  Similarity=0.127  Sum_probs=26.0

Q ss_pred             EecCCcEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          11 VLEDGMISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        11 ~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      ....+....|.|.+++++|.|.|.|.+....+
T Consensus        67 ~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          67 FQKSTSSFNFTITASQVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             EETTTTEEEEEESSCCGGGCEEEEEEEECSBT
T ss_pred             EcCCCCEEEEeecccccccCCCceEeCCCCCC
Confidence            34456788999999999999999998766543

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.066  Score=31.60  Aligned_cols=29  Identities=17%  Similarity=0.109  Sum_probs=23.9

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTA   44 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~   44 (273)
                      ....|.|.++...|.|.|+|...+..+.+
T Consensus        60 ~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S   88 (99)
T d1ucta1          60 TDPEFVIDHMDANKAGRYQCQYRIGHYRF   88 (99)
T ss_dssp             CCCEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             ceEEEEecCCCHHHCceEEEEEECCCccc
Confidence            44579999999999999999988765433

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.68  E-value=0.069  Score=32.03  Aligned_cols=33  Identities=30%  Similarity=0.451  Sum_probs=25.7

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .||+...    .+..+.|.|.++.++|.+.|.|.+..
T Consensus        60 ~rfs~~~----~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          60 SRFSSSG----TGTDFVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             TTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             cceeEeC----CCCeeeecccCCccccCEEEeEecCc
Confidence            4665532    45678999999999999999997543

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=92.53  E-value=0.27  Score=29.76  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=22.9

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ++....|.|.+++++|.+.|.|.+..
T Consensus        68 ~~~~~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          68 SGTSASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeeeeEecccCcccCceEEEeecC
Confidence            46678999999999999999998764

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.49  E-value=0.087  Score=31.56  Aligned_cols=26  Identities=27%  Similarity=0.348  Sum_probs=22.6

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .+..+.|.|.++.++|.+.|.|.+..
T Consensus        66 s~~~~~L~I~~~~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          66 SGRDYSFSISNLEPEDIATYYCLQYY   91 (106)
T ss_dssp             ETTEEEEEECSCCGGGCSEEEEEECS
T ss_pred             CCCEeeeEehhhcccCCEeEEEEEeC
Confidence            46678999999999999999997643

>d2c4fu1 b.1.2.1 (U:91-210) Extracellular region of human tissue factor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.15  Score=31.05  Aligned_cols=67  Identities=16%  Similarity=0.181  Sum_probs=43.8

Q ss_pred             CCCcceEEEEeeccEEEEEEeCCCC---CCc----------cceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCC
Q psy6638          57 EAPKNIRITEESSRSLQISWTAPYS---GNT----------AITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLP  123 (273)
Q Consensus        57 ~~p~~~~~~~~~~~~~~l~W~~~~~---~~~----------~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  123 (273)
                      +|| .+.+......++.+.-.+|..   .++          ....|.|.+...+..      . .   ......+.+|.|
T Consensus        19 GPP-~v~~~~~~~~sl~V~i~~P~t~~~~~~~~~~~~d~~~~~l~Y~V~~w~~~s~------~-~---~~~~~~l~~L~p   87 (116)
T d2c4fu1          19 GQP-TIQSFEQVGTKVNVTVEDERTLVRRNNTFLSLRDVFGKDLIYTLYYWSGKKT------A-K---TNTNEFLIDVDK   87 (116)
T ss_dssp             CCC-CEEEEEEETTEEEEEECCCEEEEESSSCEEEHHHHHGGGCEEEEEECCCCEE------E-E---ESSSEEEEECCT
T ss_pred             CCc-eEEEEecCCCEEEEEEeCCCCcccCCCceeehhhhccCCcEEEEEEEECCce------E-E---EeeeEEEeCCCC
Confidence            445 344555556788888887641   111          235788888765431      1 1   234567899999


Q ss_pred             CCeEEEEEEEe
Q psy6638         124 ATQYQVRLLAE  134 (273)
Q Consensus       124 ~~~y~~~v~a~  134 (273)
                      ++.|-+.|+|.
T Consensus        88 ~t~YCv~Vqa~   98 (116)
T d2c4fu1          88 GENYCFSVQAV   98 (116)
T ss_dssp             TCCCEEEEEEE
T ss_pred             CCcEEEEEEEE
Confidence            99999999997

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=92.23  E-value=0.096  Score=31.35  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=26.1

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +||....    ++..+.|.|.+++++|.+.|.|.+..
T Consensus        59 ~~f~~~~----~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          59 SRFSGSG----SGTEFTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             TTEEEEE----ETTEEEEEEESCCGGGCSEEEEEEEC
T ss_pred             Cceeeec----cCCEEEEEEccccccCCCcEeeeeCC
Confidence            4665542    56678999999999999999997653

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=92.23  E-value=0.12  Score=31.20  Aligned_cols=27  Identities=19%  Similarity=0.303  Sum_probs=23.3

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .+..+.|.|.+++++|.+.|.|.+...
T Consensus        69 ~~~~~~L~I~~l~~~Dsa~YyCa~~~~   95 (112)
T d1lgva1          69 SGNSASLTISGLQAEDEADYYCSSYDG   95 (112)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCEeeEEeCcCccccCEEEEEeeecC
Confidence            456789999999999999999987654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.14  E-value=0.12  Score=31.23  Aligned_cols=34  Identities=18%  Similarity=0.147  Sum_probs=26.8

Q ss_pred             cceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           2 FSRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         2 ~~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .+||....    .+..+.|.|.+++++|.+.|.|.+..
T Consensus        61 ~~rf~~s~----~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          61 PARFSGSL----IGNKAALTITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             CTTEEEEE----ETTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             ceeeeecc----cccceeeecCCCCccccEeEEEEccc
Confidence            35666543    45678999999999999999998764

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.08  E-value=0.083  Score=31.71  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=25.4

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      .||+..    .++..+.|.|.+++++|.+.|.|.+.
T Consensus        60 ~~fs~~----~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1j1pl_          60 SRFSGS----GSGTDFTLSINSVETEDFGMYFCQQA   91 (107)
T ss_dssp             TTEEEE----EETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             Ccceec----ccCCEEEEEEcccCcCCCEEEEEEcC
Confidence            456543    35667899999999999999999654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=92.05  E-value=0.14  Score=30.82  Aligned_cols=30  Identities=20%  Similarity=0.307  Sum_probs=25.1

Q ss_pred             EecCCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          11 VLEDGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        11 ~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      ...++..+.|.|.++.++|.+.|.|.+...
T Consensus        62 ~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   91 (110)
T d2esvd1          62 ITEDRKSSTLILPHATLRDTAVYYCIVVRS   91 (110)
T ss_dssp             ECTTCSEEEEEESSCCGGGCEEEEEEEEES
T ss_pred             ecccCCeeeehhcccccCCceEEEEEEeCC
Confidence            345667889999999999999999987643

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=91.99  E-value=0.17  Score=30.60  Aligned_cols=31  Identities=29%  Similarity=0.190  Sum_probs=25.8

Q ss_pred             ecCCcEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          12 LEDGMISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      ...+....|.|.++.++|.|.|.|.+....+
T Consensus        66 ~~~~~~~~L~i~~~~~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          66 DKSSGRSTLYIAASQPGDSATYLCAVRPTSG   96 (113)
T ss_dssp             ETTTTEEEEEESSCCGGGCEEEEEEEEESSS
T ss_pred             ccCCCEEEeeeecCCCCCCcEEeEeEecCCC
Confidence            4456788999999999999999999875543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.90  E-value=0.097  Score=31.32  Aligned_cols=32  Identities=22%  Similarity=0.291  Sum_probs=24.9

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      .||+..    .++..+.|.|.+++++|.+.|.|.+.
T Consensus        59 ~~f~~~----~~~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          59 ARFSGS----GSGTDFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             TTEEEE----EETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             Cceeee----cCCCEEEeEECCcChhhCCCcccccc
Confidence            355444    25667899999999999999999643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.68  E-value=0.099  Score=31.60  Aligned_cols=25  Identities=20%  Similarity=0.191  Sum_probs=21.7

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      ....|.|.+++++|+|.|.|.+...
T Consensus        77 ~~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          77 KVCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEECC
T ss_pred             CEEEEEECCCChhHCEEEEEEEEeC
Confidence            4557999999999999999998754

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=91.35  E-value=0.6  Score=28.12  Aligned_cols=30  Identities=20%  Similarity=0.192  Sum_probs=25.0

Q ss_pred             EecCCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          11 VLEDGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        11 ~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      ....+....|.|.+++++|.+.|.|.+...
T Consensus        64 ~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (115)
T d1ogad1          64 FGDARKDSSLHITAAQPGDTGLYLCAGAGS   93 (115)
T ss_dssp             ECTTSSEEEEEESSCCGGGCEEEEEEEECT
T ss_pred             cccccceeeeeecCCCccceeeEcccccCC
Confidence            345667889999999999999999987643

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.00  E-value=0.15  Score=30.66  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=25.4

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      +||...    .++....|.|.+++++|.+.|.|-+.
T Consensus        62 ~~fs~~----~~~~~~~L~I~~l~~~Dsa~YyCA~~   93 (109)
T d1bwwa_          62 SRFSGS----GSGTDYTFTISSLQPEDIATYYCQQY   93 (109)
T ss_dssp             TTEEEE----EETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEee----CCCCEeEEEEeeceeCcCceEEEeec
Confidence            456543    25667889999999999999999764

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=90.95  E-value=0.082  Score=31.74  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=25.7

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      +||+..    ..+..+.|.|.++.++|.+.|.|.+.
T Consensus        60 ~rfs~~----~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1ospl1          60 SRFSGS----DSGKDYTLSITSLQTEDVATYFCQQY   91 (107)
T ss_dssp             TTEEEE----CSSSSEEEEESSCCGGGCSEEEEEEC
T ss_pred             ccccee----cCCCeEEeEEcccccccCCcEEEeec
Confidence            466553    35667899999999999999999764

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=90.93  E-value=0.15  Score=30.89  Aligned_cols=36  Identities=28%  Similarity=0.326  Sum_probs=27.7

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .||..+.  ......++|.|.++.++|.|.|.|.+...
T Consensus        59 ~~~~~~~--~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          59 GRYTATL--DADTKQSSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             TTEEECB--CSSSSEEEEEECSCCGGGCSEEEEEEECS
T ss_pred             Cccceee--cCcccccccEEcccChhhCcccceeeecC
Confidence            3454433  33557889999999999999999998864

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=90.71  E-value=0.082  Score=32.18  Aligned_cols=27  Identities=22%  Similarity=0.190  Sum_probs=23.0

Q ss_pred             ecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          12 LEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      ...+..+.|.|.++.++|.|.|.|.+.
T Consensus        67 ~~~~~~~~L~I~~~~~~Dsg~YyCa~~   93 (115)
T d1i9ea_          67 SKSNSSFHLRKASVHWSDSAVYFCAVS   93 (115)
T ss_dssp             BTTTTBCCEEESSCCGGGCEEEEEEEE
T ss_pred             eCcCCEEEEecccccccccceeccccc
Confidence            445567789999999999999999765

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=90.70  E-value=0.21  Score=30.16  Aligned_cols=36  Identities=25%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      +|+...  +........|.|.+++++|.+.|.|-+...
T Consensus        52 gr~~~~--~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_          52 GRYVET--VNSGSKSFSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             TTEEEE--EETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             CcEeeE--EecCCceeeeEecCCcCccCEEEeEEEecC
Confidence            455443  334556789999999999999999977643

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.63  E-value=0.16  Score=31.21  Aligned_cols=25  Identities=12%  Similarity=0.190  Sum_probs=22.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      .+..++|.|.+++++|.|.|.|.+.
T Consensus        78 ~~~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          78 TNNKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             TTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEeEEEEcccccCCCEEEEeeEe
Confidence            4566789999999999999999875

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=90.61  E-value=0.24  Score=29.93  Aligned_cols=37  Identities=16%  Similarity=0.114  Sum_probs=27.1

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATNYH   41 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n~~   41 (273)
                      +||....  ...+....|.|.+++++|.+.|.|.+....
T Consensus        60 ~~~~~~~--~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          60 GHYSLNF--QKPKSSIGLIITATQIEDSAVYFCAMRGDY   96 (115)
T ss_dssp             TTEEEEE--EGGGTEEEEEECSCCGGGCEEEEEEEECCC
T ss_pred             CceEEEE--eccCCEEEEEECCCCccccccccceeecCC
Confidence            3444433  234457889999999999999999877543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.55  E-value=0.17  Score=28.46  Aligned_cols=29  Identities=17%  Similarity=0.202  Sum_probs=23.6

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcCCCCc
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNYHGTA   44 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~~g~~   44 (273)
                      +.+.|.+..+.++|.|.|+|.|.-..|..
T Consensus        66 s~FvLhF~pvl~sDnGsYrCSanf~s~vi   94 (104)
T d1xaua_          66 PVFVLHFKPIHLSDNGSYSCSTNFNSQVI   94 (104)
T ss_dssp             CEEEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             eEEEEEeeeeeecCCCceEEecCCChhhe
Confidence            57788899999999999999987554433

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=90.52  E-value=0.13  Score=30.89  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=22.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      .+..+.|.|.++.++|.+.|.|.+.
T Consensus        68 ~~~~~~L~I~~~~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          68 SGTDFTLTISRLEPEDFAVYYCQQY   92 (108)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CCCEEEEEehHheecccEEEeeecC
Confidence            4567899999999999999999764

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=90.40  E-value=0.17  Score=30.55  Aligned_cols=32  Identities=25%  Similarity=0.324  Sum_probs=25.3

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      +||...    ..+..+.|.|.+++++|.+.|.|.+.
T Consensus        64 ~rfs~~----~~~~~~~L~I~~~~~~DsA~YyCa~~   95 (111)
T d2gsia1          64 ARFSGS----GSGTDFTLNIHPVEEEDAATYYCSHI   95 (111)
T ss_dssp             TTEEEE----EETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CcEEEe----cCCCchhcccccccccCCceEEEEEC
Confidence            466543    24567899999999999999999754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=90.38  E-value=0.17  Score=30.26  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=22.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      ......|.|.+++++|.+.|.|.+.
T Consensus        67 ~~~~~~L~I~~l~~~DSa~YyCa~~   91 (107)
T d1kcvl1          67 SATDFTLTISSVQADDDADYYCGQS   91 (107)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             cCCeeecEEHhheecCCceEEEEec
Confidence            4567899999999999999999764

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=90.23  E-value=0.25  Score=29.80  Aligned_cols=27  Identities=30%  Similarity=0.375  Sum_probs=23.1

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .......|.|.+++++|.+.|.|.+..
T Consensus        61 ~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          61 KGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCceeeeecccccCCcceEeeeeec
Confidence            345577999999999999999998864

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=90.12  E-value=0.19  Score=30.23  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=22.8

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ++..+.|.|.+++++|.+.|.|.+..
T Consensus        68 ~~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (111)
T d1rzfl1          68 SGTSATLGITGLQTGDEADYYCGTWD   93 (111)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEEE
T ss_pred             CCCEeeeEEeeeccccCcceEEeecC
Confidence            45678999999999999999998764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=90.01  E-value=0.19  Score=30.18  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.3

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      ++..+.|.|.++.++|.+.|.|.+.
T Consensus        67 ~~~~~~L~I~~~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          67 SGTQFSLKINSLLPEDFGSYYCQHH   91 (109)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             cCCEEEEEEccccccCCeeEEEeee
Confidence            5667899999999999999999765

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=89.96  E-value=0.33  Score=29.51  Aligned_cols=29  Identities=28%  Similarity=0.376  Sum_probs=24.1

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      .+..+.|.|.++.++|.+.|.|.+....|
T Consensus        73 ~~~~~~L~i~~~~~~Dsa~YyCa~~~~~~  101 (118)
T d2ij0c1          73 SPTLSTLTVTSAHPEDSGFYVCSALAGSG  101 (118)
T ss_dssp             SSSEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             ccccccccccccccccCceEEEEEecCCC
Confidence            45577899999999999999998875443

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=89.95  E-value=0.18  Score=30.11  Aligned_cols=32  Identities=28%  Similarity=0.389  Sum_probs=25.1

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      +||+..    ..+....|.|.+++++|.+.|.|.+.
T Consensus        60 ~rf~~~----~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1d5il1          60 SRFSGS----GSGQDYSLTISSLEYEDMGIYYCLQY   91 (107)
T ss_dssp             TTEEEE----EETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             Cceeec----ccCCEEEccccccCCcCCEEEEeeec
Confidence            456543    24567899999999999999999754

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.60  E-value=0.2  Score=29.98  Aligned_cols=33  Identities=21%  Similarity=0.426  Sum_probs=25.8

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +||....    ++....|.|.+++++|.+.|.|.+..
T Consensus        58 ~rf~~~~----~~~~~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          58 ERFSGST----SGTTATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             TTEEEEE----ETTEEEEEETTCCGGGCSEEEEEEEE
T ss_pred             ceeeecC----CCCEeeeeEcCccccCCceEEEEeec
Confidence            4665432    45678999999999999999998763

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.50  E-value=0.082  Score=32.44  Aligned_cols=25  Identities=16%  Similarity=0.064  Sum_probs=21.7

Q ss_pred             cEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          16 MISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        16 ~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      ...+|.|.+++++|+|.|.|.+...
T Consensus        81 ~~~sL~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          81 KNCTLSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEET
T ss_pred             CEEEEEECCCChHHCEEEEEEEEeC
Confidence            3568999999999999999998653

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=89.49  E-value=0.17  Score=30.21  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      ++..+.|.|.+++++|.+.|.|.+.
T Consensus        67 ~~~~~~L~I~~l~~~DsA~YyCa~~   91 (107)
T d1tjgl1          67 SGTEFTLTISTLRPEDFATYYCQQL   91 (107)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             cCCEEEEEeccceeCcCceEEEEEC
Confidence            5678899999999999999999654

>d1axib1 b.1.2.1 (B:32-130) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.2  Score=29.38  Aligned_cols=75  Identities=16%  Similarity=0.235  Sum_probs=39.7

Q ss_pred             CcceEEEEeeccEEEEEEeCCCCCC----c-cceEEEEEEEeC-CCCCCCccceEEecCCccEEEe--cCCCCCCeEEEE
Q psy6638          59 PKNIRITEESSRSLQISWTAPYSGN----T-AITQYIIQYKSS-EEMWPTQPLKIIVPGSQTSATL--QPLLPATQYQVR  130 (273)
Q Consensus        59 p~~~~~~~~~~~~~~l~W~~~~~~~----~-~~~~y~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~y~~~  130 (273)
                      |..+.........+++.|++....+    + .-..|.+.+... ...|.+.+.-  ..+...++.+  ..+.....|.++
T Consensus         2 P~~~~C~s~~~etftC~W~pG~~~~l~~~~~l~~~Y~~~~~~~~~~~~~eCpdY--~~~~~nsC~F~~~~tsiw~~Y~i~   79 (99)
T d1axib1           2 PKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDY--VSAGENSCYFNSSFTSIAIPYCIK   79 (99)
T ss_dssp             CCEEEEEBSSSSCEEEEECCC--------CSCEEEEEECC------CCEECSCS--STTCTTEEEECGGGCCSSSEEEEE
T ss_pred             CeeeeEecCCCcEEEEEecCCCcCCCCCCCceeEEEEEeccccCCCccccCcCC--ccCCccceEeCCcccceeeEEEEE
Confidence            5666666667778999999764321    1 122455544332 2344322211  1122233444  558889999999


Q ss_pred             EEEeC
Q psy6638         131 LLAEN  135 (273)
Q Consensus       131 v~a~~  135 (273)
                      |+|.|
T Consensus        80 v~a~n   84 (99)
T d1axib1          80 LTSNG   84 (99)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            99976

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=89.45  E-value=0.23  Score=29.33  Aligned_cols=26  Identities=27%  Similarity=0.394  Sum_probs=22.5

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ++....|.|.+++++|.+.|.|.+..
T Consensus        64 ~~~~~~L~I~~l~~~Dsa~YyCA~~~   89 (103)
T d8faba1          64 SGTTVTLTISGVQAEDEADYYCQAWD   89 (103)
T ss_dssp             ETTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCCccCceEcCcchhHCceEEeeecC
Confidence            55678999999999999999997653

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=89.42  E-value=0.22  Score=30.09  Aligned_cols=25  Identities=24%  Similarity=0.308  Sum_probs=21.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      ++....|.|.+++++|.+.|.|-+.
T Consensus        73 s~~~~~L~I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          73 SGTDFTLTITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCeEeEEecccccCCCeEEEeccc
Confidence            4567789999999999999999753

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=89.41  E-value=0.22  Score=30.04  Aligned_cols=29  Identities=34%  Similarity=0.416  Sum_probs=23.9

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYHG   42 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~g   42 (273)
                      .+..+.|.|.++.++|.+.|.|.+....+
T Consensus        67 ~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~   95 (113)
T d1h5ba_          67 RARYSTLHIRDAQLEDSGTYFCAAEASSG   95 (113)
T ss_dssp             SSSEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             CCceeEEEECCCCHhHCEEEEEEecCCCC
Confidence            44577899999999999999998775443

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=89.36  E-value=0.17  Score=30.29  Aligned_cols=27  Identities=30%  Similarity=0.278  Sum_probs=23.1

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ..+..+.|.|.++.++|.+.|.|.+..
T Consensus        66 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          66 KREKKLSLHIADSQPGDSATYFCAASA   92 (110)
T ss_dssp             TGGGEEEEEESSCCTTSCSEEEECCEE
T ss_pred             CCCCeeEeEeccCCCCCceeEeeeecC
Confidence            455678999999999999999998763

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=89.21  E-value=0.33  Score=29.10  Aligned_cols=28  Identities=21%  Similarity=0.152  Sum_probs=24.0

Q ss_pred             ecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          12 LEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ...+..+.|.|.++.++|.+.|.|-+..
T Consensus        66 ~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          66 NKSAKHLSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             ETTTTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             EccCCEEEEEECCCcccccEEEEeeccC
Confidence            3456789999999999999999997763

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.11  E-value=0.36  Score=28.89  Aligned_cols=27  Identities=15%  Similarity=0.286  Sum_probs=23.3

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ..+....|.|.+++++|.+.|.|.+..
T Consensus        69 ~~~~~~~L~i~~l~~~Dsa~YyCA~~~   95 (111)
T d1cd0a_          69 RSSNSASLTISGLKTEDEADYYCQSYD   95 (111)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCccccccccCCcccCcEEEEeecc
Confidence            456788999999999999999997654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=89.10  E-value=0.1  Score=31.24  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      .+....|.|.+++++|.+.|.|.+.
T Consensus        67 ~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          67 SGTDYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             ETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred             cCCEEEEEEeEeeecCCCcEEeeeC
Confidence            4567899999999999999999654

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=89.07  E-value=0.2  Score=29.99  Aligned_cols=25  Identities=28%  Similarity=0.288  Sum_probs=21.9

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      .+..+.|.|.+++++|.+.|.|.+.
T Consensus        67 ~~~~~~L~I~~~~~~DsA~YyCa~~   91 (107)
T d1mexl1          67 SGTDFTLTINNVQSEDLAEYFCQQY   91 (107)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CCCeeeeeechhheecceeEEEeEC
Confidence            4567899999999999999999754

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=88.96  E-value=0.22  Score=29.98  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=21.8

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEE
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLA   37 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a   37 (273)
                      ..+..+.|.|.+++++|.+.|.|..
T Consensus        71 ~s~~~~~L~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          71 GSGTAFTLRISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             ECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCCCEEEEEECCccccCCceEEEEe
Confidence            3567889999999999999999943

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.95  E-value=0.26  Score=29.93  Aligned_cols=26  Identities=8%  Similarity=0.078  Sum_probs=22.3

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .+....|.|.+++++|.+.|.|.+..
T Consensus        73 ~~~~~~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          73 GNESVTFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             CSSEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             CCCeEEEEECCCCcccCeEEEEEEec
Confidence            45567899999999999999998754

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=88.88  E-value=0.22  Score=30.10  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=21.8

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      .+....|.|.+++++|.+.|.|...
T Consensus        73 ~~~~~~L~I~~~~~~DsavYyCa~~   97 (113)
T d1n4xl_          73 SGTDFTLKISRVEAEDLGIYYCFQG   97 (113)
T ss_dssp             CSSEEEEEESSCCGGGCEEEEEEEC
T ss_pred             cCCcccCccCCCCcccCEEEEEEEC
Confidence            5667899999999999999999543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=88.83  E-value=0.21  Score=30.01  Aligned_cols=27  Identities=30%  Similarity=0.192  Sum_probs=23.2

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .++..+.|.|.+++++|.+.|.|.+.+
T Consensus        70 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~   96 (111)
T d1j05a_          70 GSRTDFTLIIDPVEADDVATYYCQQTN   96 (111)
T ss_dssp             CSSSEEEEEESSCCGGGCEEEEEEECS
T ss_pred             cCCCEEEEEEcccccccCccEEEeecC
Confidence            466788999999999999999997643

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.76  E-value=0.27  Score=29.14  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=21.8

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      .+..+.|.|.+++++|.+.|.|.+.
T Consensus        65 ~~~~~~L~I~~~~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          65 SGTSYSLTISSMETEDAATYYCQQW   89 (104)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEEEEecccCcccCCeEEEEec
Confidence            4567899999999999999999653

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=88.66  E-value=0.28  Score=29.36  Aligned_cols=27  Identities=22%  Similarity=0.260  Sum_probs=22.8

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .++..+.|.|.+++++|.+.|.|-+.+
T Consensus        66 ~~~~~~~L~i~~l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          66 GSGTDFTLTISSLEPEDFAMYICQQHN   92 (108)
T ss_dssp             ESSSEEEEEECSCCTTCCSEEEEEECS
T ss_pred             CCCCEEEeEeeeeEeccceEEEEeeCC
Confidence            356778999999999999999996543

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=88.64  E-value=0.26  Score=29.69  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=21.5

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      .+..+.|.|.+++++|.+.|.|...
T Consensus        72 ~~~~~~L~I~~~~~eDsAvYYC~~~   96 (112)
T d1ncwl1          72 SGTDFTLKISRVEAEDLGVYYCWQG   96 (112)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEEEEECccccCcCEeEEEEcC
Confidence            5567899999999999999999543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=88.34  E-value=0.23  Score=30.02  Aligned_cols=26  Identities=31%  Similarity=0.312  Sum_probs=22.0

Q ss_pred             cCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638          13 EDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus        13 ~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      .+.....|.|.+++++|.|.|.|.+.
T Consensus        74 ~~~~~~~L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          74 SDSRRPFLSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             TTSSSCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCeEEEeecccCCCCCcEEEEeEc
Confidence            34556789999999999999999765

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=88.14  E-value=0.36  Score=29.16  Aligned_cols=27  Identities=15%  Similarity=0.010  Sum_probs=22.4

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .+..+.|.|.+++++|.|.|.|.+...
T Consensus        69 ~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          69 SSSSFHLQKSSAQLSDSALYYCALFLA   95 (115)
T ss_dssp             GGTBCCEEESSCCGGGCEEEEEEEEEC
T ss_pred             CCCeEEeeccccccccCccceEEEEcC
Confidence            445667999999999999999987653

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=88.11  E-value=0.17  Score=30.27  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .+....|.|.+++++|.+.|.|.+.+
T Consensus        67 ~~~~~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          67 SGSDYSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             cCCEEEEEEhhhcccCCeEEEEecCc
Confidence            44577999999999999999997653

>d2b5ic2 b.1.2.1 (C:34-129) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=1.4  Score=25.52  Aligned_cols=75  Identities=11%  Similarity=0.184  Sum_probs=43.0

Q ss_pred             eEEecCCccCCceEEEEEeCCCCCCccceeeeEEEEEEEcCCCCc---cceeeeeeeEEecCCccc--EEEcCCCCccce
Q psy6638         161 EVTSDPGVVDPTELLIKWKAPPRESWNGVLLGYDVGYQISSGSSL---ALSSYTLKSVELDNQYEG--ELRIPGLTPYTK  235 (273)
Q Consensus       161 ~~~~~~~~~~~~~i~l~W~~~~~~~~~~~i~~y~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~i~~L~p~~~  235 (273)
                      +++...  .....++..|.++ .   ......|.+.|+..+....   +...+...     .+...  .+....+.-.+.
T Consensus         4 ~i~C~~--~n~e~~~C~W~~~-~---~~~~t~y~l~y~~~~~~~~~~~eCp~Y~~~-----~g~~~gC~f~~~~~~~~~~   72 (96)
T d2b5ic2           4 EVQCFV--FNVEYMNCTWQSS-S---EPQPTNLTLHYWYKNSDNDKVQKCSHYLFS-----EEITSGCQLQKKEIHLYQT   72 (96)
T ss_dssp             CCEEEE--ETTTEEEEECCCC-S---SSSCCCCEEEEEETTSSSCCCEECSSEEEE-----TTEEEEEEEEGGGCCTTSC
T ss_pred             CcEEEE--ccCCEEEEEeCCC-C---CCCCeEEEEEEEECCCCccceEeCCchhcc-----CCceeeeEeCCccccceEE
Confidence            455555  6788999999533 2   2334689999887654221   11111111     11112  334444666789


Q ss_pred             EEEEEEEecCC
Q psy6638         236 YAIVVRGYNSV  246 (273)
Q Consensus       236 Y~~~v~a~n~~  246 (273)
                      |.|.|.+.+..
T Consensus        73 y~i~v~~~~~~   83 (96)
T d2b5ic2          73 FVVQLQDPREP   83 (96)
T ss_dssp             EEEEEECSSCT
T ss_pred             EEEEEEccCcc
Confidence            99999988753

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.31  E-value=0.35  Score=29.30  Aligned_cols=26  Identities=19%  Similarity=0.231  Sum_probs=22.3

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .+....|.|.+++++|.+.|.|.+..
T Consensus        71 ~~~~~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          71 NESRVNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEEhhcCccccCEeEEEEEec
Confidence            44577899999999999999998753

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=86.95  E-value=0.4  Score=28.73  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=22.2

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ....+.|.|.++.++|.+.|.|.+..
T Consensus        69 ~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          69 EGSVSTLKIQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             TSSCEEEEESSCCGGGCEEEEEEEES
T ss_pred             cCCEEEEEECCCCcCCCEEEEEeeeC
Confidence            44567899999999999999998753

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.81  E-value=0.34  Score=29.55  Aligned_cols=26  Identities=27%  Similarity=0.356  Sum_probs=22.1

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .+..+.|.|.+++++|.+.|.|.+..
T Consensus        67 ~~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          67 SGTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             EBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             CCCEEEEEcccCccCCCeEEEeeccC
Confidence            45567899999999999999997653

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=86.80  E-value=0.53  Score=28.20  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=22.9

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .+..+.|.|.+++++|.+.|.|.+...
T Consensus        68 ~~~~~~L~I~~~~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          68 SNSRSEMNVSTLELGDSALYLCASSLA   94 (113)
T ss_dssp             TTSCEEEEECSCCGGGCEEEEEEEESS
T ss_pred             cCCeeEEEECCCCcccceeeeeeeeCC
Confidence            445679999999999999999987653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=86.56  E-value=0.26  Score=29.80  Aligned_cols=27  Identities=11%  Similarity=0.100  Sum_probs=22.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .+....|.|.+++++|.|.|.|.+...
T Consensus        69 ~~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          69 SETSFHLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             GGTBCCEEESSCCGGGCEEEEEEEESS
T ss_pred             CCCEEEEeeccccccCCccceeeecCC
Confidence            344568999999999999999998754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=86.50  E-value=0.43  Score=28.50  Aligned_cols=27  Identities=22%  Similarity=0.323  Sum_probs=23.4

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      ++....|.|.+++++|.+.|.|.+...
T Consensus        66 ~~~~~~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          66 SGNMATLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCccceEEeeeccCCCEEEEEEecCC
Confidence            567789999999999999999987643

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=86.38  E-value=0.38  Score=28.88  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=24.1

Q ss_pred             EecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          11 VLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        11 ~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +..+.....|.|.++.++|.+.|.|.+..
T Consensus        62 ~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          62 IAEDRKSSTLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             ECTTSSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             ecccCCeeEEEEeecccccceeEeeeEec
Confidence            34466778999999999999999997654

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=86.35  E-value=0.78  Score=27.81  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=24.0

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCL   36 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~   36 (273)
                      +||++..  .....+..|+|++|+++|.+.|.|.
T Consensus        65 gRftiS~--D~s~nt~~L~i~~l~~eDtA~YYCA   96 (120)
T d1dn0b1          65 SRVTISV--DTSKNQFSLKLSSVTAADTAVYYCA   96 (120)
T ss_dssp             TTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             eeeEEec--cCchheecccccccccccccEEEEE
Confidence            4665543  2344567899999999999999994

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=85.90  E-value=0.48  Score=28.28  Aligned_cols=28  Identities=21%  Similarity=0.236  Sum_probs=23.5

Q ss_pred             ecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          12 LEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        12 ~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ..++....|.|.++.++|.+.|.|.+..
T Consensus        66 ~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   93 (110)
T d1ac6a_          66 NKEATSFHLQKASVQESDSAVYYCALSG   93 (110)
T ss_dssp             BTTTTBCCEEEEEECGGGCEEEEEEEEE
T ss_pred             cCCCCEEeeeecCcCcCCCcccceeecC
Confidence            3455678899999999999999998754

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=85.82  E-value=0.51  Score=28.73  Aligned_cols=26  Identities=19%  Similarity=0.196  Sum_probs=22.1

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ....+.|.|.+++++|.+.|.|....
T Consensus        75 ~~~~~~L~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          75 SASTSILTIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             TTTEEEEEECSCCGGGCSEEEEEECC
T ss_pred             ccccccccccccccccceeEEEEEcC
Confidence            45678899999999999999997643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=85.58  E-value=0.51  Score=28.13  Aligned_cols=26  Identities=8%  Similarity=0.066  Sum_probs=22.1

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .+..+.|.|.+++++|.+.|.|-+..
T Consensus        70 ~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          70 SQEQFSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCEEEEEECCCCHhhCEEEEEeeCC
Confidence            44568899999999999999997653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=85.50  E-value=0.82  Score=27.91  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=26.1

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +||++.  .........|.|.+++++|.+.|.|-+..
T Consensus        67 ~rf~~~--~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          67 GKFEVD--RIPETSTSTLTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             TSEEEE--EETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ceeEEe--eeccccceeecccccccccCcEEEEeeeC
Confidence            356543  22345678899999999999999998654

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.31  E-value=0.39  Score=29.10  Aligned_cols=26  Identities=23%  Similarity=0.311  Sum_probs=22.7

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ++....|.|.++..+|.+.|.|.+..
T Consensus        71 ~~~~~~L~I~~l~~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          71 SGNQVNLTIQGLRAMDTGLYICKVEL   96 (118)
T ss_dssp             CSSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEEeeccccCCCEEEEEeEec
Confidence            45678999999999999999997764

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=84.89  E-value=0.67  Score=28.17  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=27.1

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +||+...  ........|.|.+++++|.|.|.|.+..
T Consensus        62 ~r~~~s~--~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          62 DNFQGDI--DIAKNLAVLKILAPSERDEGSYYCACDT   96 (120)
T ss_dssp             TTEEEEE--EGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             ccceeec--cccccceecccccccccCCceeecCccc
Confidence            4665543  2345678999999999999999998654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.58  E-value=1.3  Score=25.55  Aligned_cols=77  Identities=5%  Similarity=-0.151  Sum_probs=42.6

Q ss_pred             eccEEEEEEeCCCCCCccceEEEEEEEeCCCCCCCccceEEecCCccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceE
Q psy6638          68 SSRSLQISWTAPYSGNTAITQYIIQYKSSEEMWPTQPLKIIVPGSQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQ  147 (273)
Q Consensus        68 ~~~~~~l~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~  147 (273)
                      ....|+|.+..+.    ....|.+........................+.|.++.+.....|+|...+..+++..|.++.
T Consensus        20 ~G~~VTL~C~~~~----~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~   95 (99)
T d1ucta1          20 LDGSVKIQCQAIR----EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLE   95 (99)
T ss_dssp             TTCCEEEEECCCT----TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEE
T ss_pred             CCCeEEEEEcCCC----CCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCCCCEE
Confidence            4677888887653    234566654332211000000001112334688899999888899998877665565555554


Q ss_pred             E
Q psy6638         148 A  148 (273)
Q Consensus       148 ~  148 (273)
                      .
T Consensus        96 L   96 (99)
T d1ucta1          96 L   96 (99)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=84.05  E-value=0.45  Score=28.61  Aligned_cols=25  Identities=8%  Similarity=0.162  Sum_probs=21.4

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +..+.|.|.++.++|.+.|.|.+..
T Consensus        69 ~~~~~L~I~~~~~~DSa~YyCa~~~   93 (114)
T d1ogae1          69 KESFPLTVTSAQKNPTAFYLCASSS   93 (114)
T ss_dssp             TTBCCEEECSCCSCCCEEEEEEEES
T ss_pred             CCeEEEEECcCCcCCceeEEEeecc
Confidence            4466899999999999999997654

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=83.13  E-value=0.84  Score=27.99  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=25.2

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      +||++..  .....+..|+|.+++++|...|.|-..
T Consensus        67 ~Rftis~--d~s~~t~~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          67 SRLTVSK--DTSSNQVFLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             TTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EeeEEec--ccCCcEEEcceecccccccceEEEEEe
Confidence            4665543  223456789999999999999999753

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=83.09  E-value=0.52  Score=28.14  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=21.5

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +..+.|.|.++.++|.+.|.|-+..
T Consensus        70 ~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          70 GTYSTLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             SSSEEEEESSCCGGGCEEEEEEEES
T ss_pred             CCEEEEEECCcccCCCceEEEeeeC
Confidence            4457899999999999999998654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=83.09  E-value=2.8  Score=25.36  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=25.0

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +|+++..  ....++..|+|.+|+++|.+.|.|-...
T Consensus        66 gR~tis~--D~s~nt~~L~i~~L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          66 GRFTISR--DNAKNTLYLQMSSLKSEDTAMYYCVRHE  100 (123)
T ss_dssp             TTEEEEE--EGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEEe--cCcccccccceeeeccCcccceeEEecC
Confidence            3555542  2234566799999999999999996543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.05  E-value=0.58  Score=27.27  Aligned_cols=27  Identities=11%  Similarity=0.063  Sum_probs=22.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .+....|.|.++...|.|.|+|.-...
T Consensus        56 ~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          56 GSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             -CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             CceEEEEEeeecccCCCeEEEEeeEcC
Confidence            345678999999999999999986544

>d1axib1 b.1.2.1 (B:32-130) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.50  E-value=2.7  Score=24.37  Aligned_cols=77  Identities=12%  Similarity=0.069  Sum_probs=39.5

Q ss_pred             CeeEEecCCccCCceEEEEEeCCCCCCc--ccee-eeEEEEEEEcCCCCccceeeeeeeEEe-cCCcccEEEc--CCCCc
Q psy6638         159 PREVTSDPGVVDPTELLIKWKAPPRESW--NGVL-LGYDVGYQISSGSSLALSSYTLKSVEL-DNQYEGELRI--PGLTP  232 (273)
Q Consensus       159 p~~~~~~~~~~~~~~i~l~W~~~~~~~~--~~~i-~~y~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i--~~L~p  232 (273)
                      |..+....  .....++..|++......  .+.+ ..|.+.++......       +.+... ..+...+..+  ..+..
T Consensus         2 P~~~~C~s--~~~etftC~W~pG~~~~l~~~~~l~~~Y~~~~~~~~~~~-------~~eCpdY~~~~~nsC~F~~~~tsi   72 (99)
T d1axib1           2 PKFTKCRS--PERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQE-------WKECPDYVSAGENSCYFNSSFTSI   72 (99)
T ss_dssp             CCEEEEEB--SSSSCEEEEECCC--------CSCEEEEEECC------C-------CEECSCSSTTCTTEEEECGGGCCS
T ss_pred             CeeeeEec--CCCcEEEEEecCCCcCCCCCCCceeEEEEEeccccCCCc-------cccCcCCccCCccceEeCCcccce
Confidence            55677666  677899999998754211  1222 24655554432221       112110 1111234444  45778


Q ss_pred             cceEEEEEEEec
Q psy6638         233 YTKYAIVVRGYN  244 (273)
Q Consensus       233 ~~~Y~~~v~a~n  244 (273)
                      .+.|.++|+|.|
T Consensus        73 w~~Y~i~v~a~n   84 (99)
T d1axib1          73 AIPYCIKLTSNG   84 (99)
T ss_dssp             SSEEEEEEEETT
T ss_pred             eeEEEEEEEeCC
Confidence            889999999987

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.36  E-value=1.1  Score=26.30  Aligned_cols=26  Identities=15%  Similarity=0.312  Sum_probs=18.1

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      .++..|+|++|.++|.+.|.|-....
T Consensus        63 ~~t~~L~~~sL~~eDTAvYYCAr~~~   88 (103)
T d1oari_          63 SSTAYMQLSSLTSEDSAVYYCARMWY   88 (103)
T ss_dssp             -CEEEEEECCC---CCSEEEEEEEEC
T ss_pred             ccEEEeeeeeccccccEEEEeEEECC
Confidence            34668999999999999999976543

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.36  E-value=3.1  Score=24.18  Aligned_cols=37  Identities=11%  Similarity=0.090  Sum_probs=27.5

Q ss_pred             CccEEEecCCCCCCeEEEEEEEeCCCCCCCCCcceEE
Q psy6638         112 SQTSATLQPLLPATQYQVRLLAENPLGMSETGAELQA  148 (273)
Q Consensus       112 ~~~~~~~~~l~~~~~y~~~v~a~~~~g~~~~s~~~~~  148 (273)
                      ....+.|.++.......|.|.|.|..|....+..+.+
T Consensus        65 ~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l  101 (110)
T d1f97a2          65 KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM  101 (110)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEE
T ss_pred             cccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEE
Confidence            4456788999998889999999999886544443433

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=82.36  E-value=0.88  Score=27.37  Aligned_cols=33  Identities=12%  Similarity=0.171  Sum_probs=23.8

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLA   37 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a   37 (273)
                      +||++..  ....++..|+|++|+++|...|.|-.
T Consensus        66 gRftis~--D~s~~t~~L~i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          66 GKATLTV--DKSSSTAFMHLNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             TTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEee--ccCceeeEeeeeecCcCCcEEEEEec
Confidence            3555532  22345668999999999999999953

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=82.24  E-value=0.93  Score=27.05  Aligned_cols=26  Identities=8%  Similarity=0.105  Sum_probs=22.5

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      ++..+.|.|.++.++|.+.|.|.+..
T Consensus        69 ~~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          69 KKERFSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             STTBCEEEESSCCGGGCEEEEEEEEC
T ss_pred             cCcEeeeEeccCccCCcccEEeeEcc
Confidence            45567899999999999999998764

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=81.84  E-value=0.98  Score=26.79  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=24.6

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      +|+++..  .....+..|+|++|+++|.+.|.|-..
T Consensus        68 gR~tiS~--D~s~~t~~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          68 DRFTISR--DDSQSMLYLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             TTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCceecc--ccccceeEecccCCCHhHCEEEEEEEc
Confidence            3555432  223456789999999999999999743

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.79  E-value=0.94  Score=26.02  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=20.8

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEE
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLA   37 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a   37 (273)
                      .+....|.|.++...+.|.|+|..
T Consensus        50 ~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          50 GKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCceeEEEecccChhcCceEEEEe
Confidence            346778999999999999999964

>d2gysa3 b.1.2.1 (A:218-316) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.78  E-value=2.8  Score=23.60  Aligned_cols=38  Identities=21%  Similarity=0.337  Sum_probs=27.2

Q ss_pred             CCcceEEEEeeccEEEEEEeCCCCCCccceEEEEEEEeC
Q psy6638          58 APKNIRITEESSRSLQISWTAPYSGNTAITQYIIQYKSS   96 (273)
Q Consensus        58 ~p~~~~~~~~~~~~~~l~W~~~~~~~~~~~~y~v~~~~~   96 (273)
                      .|+|++..-.+...+.++|.....-. ....|-+.|+..
T Consensus         3 qPrNLqC~FdG~~~LsCSWEV~~~Vt-~SVsFgLfYk~~   40 (99)
T d2gysa3           3 QPQNLECFFDGAAVLSCSWEVRKEVA-SSVSFGLFYKPS   40 (99)
T ss_dssp             SCEEEEEEECSSSEEEEEEEEEHHHH-TTCCEEEEEECC
T ss_pred             CccceEEEeCCcceEEEEEEEeeeEe-eeEEEEEEeccC
Confidence            58888888888889999998543211 124688888864

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=81.70  E-value=1.4  Score=26.67  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=21.2

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      .....|+|.+++++|.+.|.|-...
T Consensus        77 ~~~~~L~i~~l~~eDsAvYyCAr~~  101 (120)
T d2agjh1          77 KKQVVLTLTNLDPVDTATYYCARTS  101 (120)
T ss_dssp             TTEEEEEEESCCGGGCEEEEEEEEC
T ss_pred             cceeeeeEEeeeeccceEEeeEecC
Confidence            4577899999999999999996443

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=81.39  E-value=1  Score=27.12  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=24.4

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLA   37 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a   37 (273)
                      +|+++..  ....++..|+|++|+++|.+.|.|..
T Consensus        66 gRfTiS~--D~s~~t~yLq~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          66 GKATLTA--DRSSSIVYLQLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             TTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEec--cCccceeeecccccCCCcceEEEEee
Confidence            4555542  23345678999999999999999954

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=81.20  E-value=1.4  Score=26.65  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=25.3

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +|+++..  ....++..|+|++|.++|.+.|.|....
T Consensus        66 gR~tis~--D~s~~~~~L~i~sL~~eDtAvYYCAr~~  100 (121)
T d1ol0a_          66 GRFTISR--DNSKNTLYLQMNSLRAEDTAVYYCAREP  100 (121)
T ss_dssp             TTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             eeeEEec--cccceeEEeeeeecccccceEEEEEEec
Confidence            3555442  2234577899999999999999996543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.16  E-value=1.1  Score=26.93  Aligned_cols=34  Identities=18%  Similarity=0.205  Sum_probs=25.0

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      +||++..  ........|+|.+|.++|.+.|.|-..
T Consensus        65 gRftiS~--D~s~n~~~L~~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          65 SRLSINR--DTSKSQVFLKMNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             SSEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cceEEec--ccccceeeccccccccCcceEEEEecc
Confidence            4665542  234456789999999999999999543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=81.12  E-value=1.3  Score=27.36  Aligned_cols=35  Identities=23%  Similarity=0.202  Sum_probs=25.7

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +||++.-  ........|+|.+++++|...|.|-...
T Consensus        67 ~Rftis~--d~s~~~~~L~i~~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          67 TRLTITK--DTSKNQVVLVMTRVSPVDTATYFCAHRR  101 (132)
T ss_dssp             TTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ecceecc--cccccEEEcccccCCcccceEEEEEEec
Confidence            4666532  2334567899999999999999997553

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=81.02  E-value=1.3  Score=26.69  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=25.0

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      +||++..  ....++..|+|.+|+++|.+.|.|...
T Consensus        66 gRftiSr--D~s~nt~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          66 GRVTITA--DTSTDTGYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             TTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeEEEec--ccCceEEEeeeeccCcccceEEEEeec
Confidence            3555432  234556789999999999999999654

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=80.85  E-value=2  Score=26.12  Aligned_cols=35  Identities=17%  Similarity=0.222  Sum_probs=25.5

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +|+++..  ....++..|+|++|+++|.+.|.|....
T Consensus        66 gR~tiS~--D~s~nt~~L~~~~L~~eDtavYYCAr~~  100 (126)
T d1dfbh1          66 GRFTISR--DNAKNSLYLQMNSLRAEDMALYYCVKGR  100 (126)
T ss_dssp             TTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cceEEec--cCCCcEEEeeeeeeccCcceEEEEEecc
Confidence            4555432  2334567899999999999999997554

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=80.75  E-value=0.12  Score=30.23  Aligned_cols=29  Identities=24%  Similarity=0.252  Sum_probs=23.6

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcCCCC
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNYHGT   43 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~~g~   43 (273)
                      .....|.|.+++++|.|.|.|-+....|.
T Consensus        61 ~~~~~L~I~~~~~~Dsa~YyCA~~~~~g~   89 (96)
T d1ymmd1          61 KKSSSLLITASRAADTASYFCATDTTSGT   89 (96)
T ss_dssp             GTBCCBCCSSCCSTTCSCCEEEEEETTSC
T ss_pred             ceecccCcCCCCcccCEEEeEeEecCCCC
Confidence            34568999999999999999988765443

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=80.52  E-value=2  Score=25.98  Aligned_cols=34  Identities=21%  Similarity=0.143  Sum_probs=25.0

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      +||++.-  ....+...|+|.+|+++|.+.|.|...
T Consensus        67 gRfTiSr--D~s~n~~~L~~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          67 SRSTISR--DTSLNKFFIQLISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             TTEEEEE--ETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ccceecc--ccccceeecceeeeeccceeEEEEEec
Confidence            4555532  234456789999999999999999644

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=80.49  E-value=0.45  Score=28.48  Aligned_cols=28  Identities=7%  Similarity=0.065  Sum_probs=22.9

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcCC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNYH   41 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~~   41 (273)
                      +...+.|.|.++.++|.+.|.|-+....
T Consensus        67 ~~~~~~L~i~~~~~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          67 RTEHFPLTLESARPSHTSQYLCASSENI   94 (112)
T ss_dssp             SSSBCCEEBSSCCTTTCSEEEEEEECSS
T ss_pred             CCCceEeeeccccccccccEEEEEecCC
Confidence            3445689999999999999999877543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=80.34  E-value=1.2  Score=26.75  Aligned_cols=34  Identities=15%  Similarity=0.262  Sum_probs=24.7

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEE
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLAT   38 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~   38 (273)
                      +||++..  ....++..|+|.+|+++|...|.|...
T Consensus        65 gRftiS~--D~s~~t~~L~m~sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          65 GKATLTS--DKSSNTAYLELSSLTSEDSAVYYCARS   98 (117)
T ss_dssp             TCEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEEe--ccCceeEeecccccCCCcceEEEEeec
Confidence            4555532  223456789999999999999999643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=80.16  E-value=0.97  Score=26.14  Aligned_cols=26  Identities=15%  Similarity=0.272  Sum_probs=21.7

Q ss_pred             CcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          15 GMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        15 ~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      +....|.|.++...+.|.|+|.-...
T Consensus        54 ~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          54 VSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             EEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             ceEEEEEEcccCcccCeEEEEEEEcC
Confidence            44678999999999999999986543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=80.09  E-value=1.9  Score=25.92  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=22.0

Q ss_pred             CCcEEEEEEeeeeeCCCEEEEEEEEcC
Q psy6638          14 DGMISELGIANVLRQDSGTLSCLATNY   40 (273)
Q Consensus        14 ~~~~~~l~i~~~~~~~~~~y~~~a~n~   40 (273)
                      ...+..|+|++|+++|.+.|.|.....
T Consensus        75 s~nt~~L~~~sL~~eDtAvYYCAr~~~  101 (118)
T d2fbjh1          75 AKNSLYLQMSKVRSEDTALYYCARLHY  101 (118)
T ss_dssp             SSCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ccceeeccccccCCCcceEEEeeEecC
Confidence            345667999999999999999976543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=80.08  E-value=2.1  Score=25.86  Aligned_cols=35  Identities=14%  Similarity=0.287  Sum_probs=25.4

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +|+++..  ....++..|+|.+|+++|.+.|.|....
T Consensus        67 gR~tiS~--D~s~ntvyL~~~~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          67 GRVTFTR--DTSATTAYMGLSSLRPEDTAVYYCARDP  101 (122)
T ss_dssp             TTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEEET
T ss_pred             EeeEEec--cCCcceeeecccccCCCcceEEEEeecC
Confidence            4555432  2334566899999999999999997653

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=80.06  E-value=1.5  Score=26.30  Aligned_cols=35  Identities=11%  Similarity=0.230  Sum_probs=25.3

Q ss_pred             ceeEEEEEEecCCcEEEEEEeeeeeCCCEEEEEEEEc
Q psy6638           3 SRYTIREQVLEDGMISELGIANVLRQDSGTLSCLATN   39 (273)
Q Consensus         3 ~r~~~~~~~~~~~~~~~l~i~~~~~~~~~~y~~~a~n   39 (273)
                      +|+++..  ....++..|+|++|+++|.+.|.|....
T Consensus        66 gR~tiS~--D~s~~t~~L~i~~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          66 GSVTMTA--DTSTNIAYMELSSLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             TTEEEEE--ETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             eeeeeec--ccccceEEEeecccCcCcceEEEEeEcC
Confidence            4555432  2234566899999999999999997543