Psyllid ID: psy678

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60
Protein Sequence
MQRAQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHEEEEEccccc
Coil and Loop (DISEMBL)
MQRAQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS
Flexible Loop (DISEMBL)
mqraqsllkceNAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSllkcenaavllidesss
Low Complexity Region (SEG)
MQRAQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS
Disordered region (IsUnstruct)
*******LKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLI*****
Disordered Region (DISOPRED)
***********NAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE***
Disordered Region (DISEMBL)
MQRAQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS
Disordered Region (DISPRO)
*****SLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLID****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRAQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	60	2.2.26 [Sep-21-2011]
P0C1Q2	933	Dual 3',5'-cyclic-AMP and	yes	N/A	0.9	0.057	0.574	1e-09
Q8VID6	935	Dual 3',5'-cyclic-AMP and	yes	N/A	0.9	0.057	0.574	1e-09
Q9HCR9	933	Dual 3',5'-cyclic-AMP and	yes	N/A	0.9	0.057	0.574	1e-09
Q1KKS3	903	Dual 3',5'-cyclic-AMP and	N/A	N/A	0.7	0.046	0.642	2e-08
B4PSS5	1149	cGMP-specific 3',5'-cycli	N/A	N/A	0.683	0.035	0.487	0.0004
B3LVW5	1158	cGMP-specific 3',5'-cycli	N/A	N/A	0.683	0.035	0.487	0.0004
B4HEM4	1205	cGMP-specific 3',5'-cycli	N/A	N/A	0.683	0.034	0.487	0.0004
B4QZU1	1143	cGMP-specific 3',5'-cycli	N/A	N/A	0.683	0.035	0.487	0.0004
B3P3K2	1131	cGMP-specific 3',5'-cycli	N/A	N/A	0.683	0.036	0.487	0.0004
Q9VFI9	1118	cGMP-specific 3',5'-cycli	yes	N/A	0.683	0.036	0.487	0.0004

>sp|P0C1Q2|PDE11_MOUSE Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A OS=Mus musculus GN=Pde11a PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 4   AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE 57
           A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++
Sbjct: 377 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLED 430

Plays a role in signal transduction by regulating the intracellular concentration of cyclic nucleotides cAMP and cGMP. Catalyzes the hydrolysis of both cAMP and cGMP to 5'-AMP and 5'-GMP, respectively.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 3EC: 5

>sp|Q8VID6|PDE11_RAT Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A OS=Rattus norvegicus GN=Pde11a PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 4   AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE 57
           A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++
Sbjct: 377 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLED 430

Plays a role in signal transduction by regulating the intracellular concentration of cyclic nucleotides cAMP and cGMP. Catalyzes the hydrolysis of both cAMP and cGMP to 5'-AMP and 5'-GMP, respectively.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: 5

>sp|Q9HCR9|PDE11_HUMAN Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A OS=Homo sapiens GN=PDE11A PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 4   AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE 57
           A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++
Sbjct: 377 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLED 430

Plays a role in signal transduction by regulating the intracellular concentration of cyclic nucleotides cAMP and cGMP. Catalyzes the hydrolysis of both cAMP and cGMP to 5'-AMP and 5'-GMP, respectively.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: 5

>sp|Q1KKS3|PDE11_TAKRU Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A OS=Takifugu rubripes GN=pde11a PE=3 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 36/42 (85%)

Query: 16  LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE 57
           LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +V L+++
Sbjct: 343 LLEVVNDLFEEQTDLEKIVRKIMHRAQTLLKCERCSVQLLED 384

Plays a role in signal transduction by regulating the intracellular concentration of cyclic nucleotides cAMP and cGMP. Catalyzes the hydrolysis of both cAMP and cGMP to 5'-AMP and 5'-GMP, respectively.

Takifugu rubripes (taxid: 31033)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: 5

>sp|B4PSS5|PDE6_DROYA cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila yakuba GN=Pde6 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 16  LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLID 56
           LL +   +FEEQ ++E +V KIM  A+ LLKCE  +V L+D
Sbjct: 449 LLNLARSIFEEQNNLECLVTKIMTEARELLKCERCSVFLVD 489

Has a role regulating cGMP transport in Malpighian tubule principal cells.

Drosophila yakuba (taxid: 7245)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: 5

>sp|B3LVW5|PDE6_DROAN cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila ananassae GN=Pde6 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 16  LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLID 56
           LL +   +FEEQ ++E +V KIM  A+ LLKCE  +V L+D
Sbjct: 413 LLNLARSIFEEQNNLECLVTKIMTEARELLKCERCSVFLVD 453

Has a role regulating cGMP transport in Malpighian tubule principal cells.

Drosophila ananassae (taxid: 7217)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: 5

>sp|B4HEM4|PDE6_DROSE cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila sechellia GN=Pde6 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 16  LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLID 56
           LL +   +FEEQ ++E +V KIM  A+ LLKCE  +V L+D
Sbjct: 430 LLNLARSIFEEQNNLECLVTKIMTEARELLKCERCSVFLVD 470

Has a role regulating cGMP transport in Malpighian tubule principal cells.

Drosophila sechellia (taxid: 7238)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: 5

>sp|B4QZU1|PDE6_DROSI cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila simulans GN=Pde6 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 16  LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLID 56
           LL +   +FEEQ ++E +V KIM  A+ LLKCE  +V L+D
Sbjct: 443 LLNLARSIFEEQNNLECLVTKIMTEARELLKCERCSVFLVD 483

Has a role regulating cGMP transport in Malpighian tubule principal cells.

Drosophila simulans (taxid: 7240)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: 5

>sp|B3P3K2|PDE6_DROER cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila erecta GN=Pde6 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 16  LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLID 56
           LL +   +FEEQ ++E +V KIM  A+ LLKCE  +V L+D
Sbjct: 431 LLNLARSIFEEQNNLECLVTKIMTEARELLKCERCSVFLVD 471

Has a role regulating cGMP transport in Malpighian tubule principal cells.

Drosophila erecta (taxid: 7220)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: 5

>sp|Q9VFI9|PDE6_DROME cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila melanogaster GN=Pde6 PE=1 SV=4

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 16  LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLID 56
           LL +   +FEEQ ++E +V KIM  A+ LLKCE  +V L+D
Sbjct: 418 LLNLARSIFEEQNNLECLVTKIMTEARELLKCERCSVFLVD 458

Has a role regulating cGMP transport in Malpighian tubule principal cells.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
193685899	929	PREDICTED: dual 3',5'-cyclic-AMP and -GM	0.733	0.047	0.818	2e-12
405958962	883	Dual 3',5'-cyclic-AMP and -GMP phosphodi	0.733	0.049	0.795	4e-11
297668938	593	PREDICTED: dual 3',5'-cyclic-AMP and -GM	1.0	0.101	0.542	6e-11
242014746	916	dual 3',5'-cyclic-AMP and -GMP phosphodi	0.733	0.048	0.704	4e-10
443713821	874	hypothetical protein CAPTEDRAFT_169631 [	0.766	0.052	0.717	2e-09
345328003	1282	PREDICTED: dual 3',5'-cyclic-AMP and -GM	0.95	0.044	0.543	8e-09
390337273	1023	PREDICTED: dual 3',5'-cyclic-AMP and -GM	0.766	0.044	0.652	2e-08
350593661	433	PREDICTED: dual 3',5'-cyclic-AMP and -GM	0.9	0.124	0.574	3e-08
149022325	505	rCG26934, isoform CRA_b [Rattus norvegic	0.9	0.106	0.574	3e-08
338715599	987	PREDICTED: dual 3',5'-cyclic-AMP and -GM	0.9	0.054	0.574	4e-08

>gi|193685899|ref|XP_001952168.1| PREDICTED: dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A [Acyrthosiphon pisum]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 41/44 (93%)

Query: 15  KLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDES 58
            LLEVVHDLFEEQTSI++V++KIMQRAQ LLKCE AAVLL+DES
Sbjct: 405 NLLEVVHDLFEEQTSIDKVIMKIMQRAQRLLKCERAAVLLVDES 448

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405958962|gb|EKC25040.1| Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A [Crassostrea gigas]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 39/44 (88%)

Query: 16  LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS 59
           LLEVVHDLFEEQTS+E V++KIMQRAQSLLKCE  +VLL D SS
Sbjct: 357 LLEVVHDLFEEQTSVENVILKIMQRAQSLLKCERCSVLLRDGSS 400

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|297668938|ref|XP_002812676.1| PREDICTED: dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A-like, partial [Pongo abelii]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 10/70 (14%)

Query: 1  MQRAQSLLKCEN----------AAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENA 50
          M RAQ+LLKCE           +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  
Sbjct: 24 MHRAQTLLKCERCSVLLLEDIESPALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERC 83

Query: 51 AVLLIDESSS 60
          +VLL+++  S
Sbjct: 84 SVLLLEDIES 93

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242014746|ref|XP_002428046.1| dual 3',5'-cyclic-AMP and -GMP phosphodiesterase, putative [Pediculus humanus corporis] gi|212512565|gb|EEB15308.1| dual 3',5'-cyclic-AMP and -GMP phosphodiesterase, putative [Pediculus humanus corporis]

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 41/44 (93%)

Query: 16  LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS 59
           LLEVVHDLFEEQTS+E+V++KIMQR Q LL+C+ A+VLL+D++S
Sbjct: 390 LLEVVHDLFEEQTSLEKVILKIMQRTQVLLECQKASVLLLDDNS 433

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443713821|gb|ELU06480.1| hypothetical protein CAPTEDRAFT_169631 [Capitella teleta]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 37/46 (80%)

Query: 11  ENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLID 56
           E    LLEVVHDLFEEQTS++ VV+KIMQRAQSLL+CE   VLL D
Sbjct: 337 EQNKTLLEVVHDLFEEQTSVDDVVMKIMQRAQSLLQCERCVVLLKD 382

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|345328003|ref|XP_001515351.2| PREDICTED: dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A [Ornithorhynchus anatinus]

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 4   AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
           A S  + + +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++  S
Sbjct: 607 AASRKEYDRSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLEDIES 663

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390337273|ref|XP_001191221.2| PREDICTED: dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A-like [Strongylocentrotus purpuratus]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 37/46 (80%)

Query: 15  KLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
           KLLEV HDLFEEQTS++ VV K M RAQSLLKCE  +V++I + S+
Sbjct: 490 KLLEVAHDLFEEQTSLDNVVQKTMLRAQSLLKCERCSVMIIKDPSA 535

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|350593661|ref|XP_003483739.1| PREDICTED: dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A-like, partial [Sus scrofa]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 4   AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE 57
           A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++
Sbjct: 376 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLED 429

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149022325|gb|EDL79219.1| rCG26934, isoform CRA_b [Rattus norvegicus]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 4   AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE 57
           A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++
Sbjct: 377 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLED 430

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|338715599|ref|XP_001500671.2| PREDICTED: dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A [Equus caballus]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 4   AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE 57
           A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++
Sbjct: 377 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLED 430

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
UNIPROTKB|H7C4D0	437	PDE11A "Dual 3',5'-cyclic-AMP	0.95	0.130	0.561	2.4e-10
UNIPROTKB|E2R989	888	PDE11A "Uncharacterized protei	0.95	0.064	0.561	7.2e-10
UNIPROTKB|E1BPD8	928	PDE11A "Uncharacterized protei	0.95	0.061	0.561	7.6e-10
UNIPROTKB|Q9HCR9	933	PDE11A "Dual 3',5'-cyclic-AMP	0.95	0.061	0.561	7.7e-10
UNIPROTKB|F6UTJ5	933	PDE11A "Uncharacterized protei	0.95	0.061	0.561	7.7e-10
UNIPROTKB|F7HZP8	933	PDE11A "Uncharacterized protei	0.95	0.061	0.561	7.7e-10
MGI|MGI:3036251	933	Pde11a "phosphodiesterase 11A"	0.95	0.061	0.561	7.7e-10
UNIPROTKB|F7B340	935	PDE11A "Uncharacterized protei	0.95	0.060	0.561	7.7e-10
RGD|621793	935	Pde11a "phosphodiesterase 11A"	0.95	0.060	0.561	7.7e-10
UNIPROTKB|F1NEV1	855	PDE11A "Uncharacterized protei	0.95	0.066	0.543	1.4e-09

UNIPROTKB|H7C4D0 PDE11A "Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query:     4 AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
             A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++  S
Sbjct:    16 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLEDIES 72

GO:0004114 "3',5'-cyclic-nucleotide phosphodiesterase activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2R989 PDE11A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 154 (59.3 bits), Expect = 7.2e-10, P = 7.2e-10
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query:     4 AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
             A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++  S
Sbjct:   370 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLEDIES 426

GO:0030553 "cGMP binding" evidence=ISS

GO:0004118 "cGMP-stimulated cyclic-nucleotide phosphodiesterase activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E1BPD8 PDE11A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 154 (59.3 bits), Expect = 7.6e-10, P = 7.6e-10
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query:     4 AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
             A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++  S
Sbjct:   369 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLEDIES 425

GO:0030553 "cGMP binding" evidence=ISS

GO:0004118 "cGMP-stimulated cyclic-nucleotide phosphodiesterase activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q9HCR9 PDE11A "Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 7.7e-10, P = 7.7e-10
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query:     4 AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
             A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++  S
Sbjct:   377 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLEDIES 433

GO:0007165 "signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0047555 "3',5'-cyclic-GMP phosphodiesterase activity" evidence=IEA

GO:0006198 "cAMP catabolic process" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

GO:0043204 "perikaryon" evidence=IEA

GO:0046069 "cGMP catabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0004112 "cyclic-nucleotide phosphodiesterase activity" evidence=NAS

GO:0030553 "cGMP binding" evidence=IDA

GO:0004118 "cGMP-stimulated cyclic-nucleotide phosphodiesterase activity" evidence=IDA

GO:0004114 "3',5'-cyclic-nucleotide phosphodiesterase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

UNIPROTKB|F6UTJ5 PDE11A "Uncharacterized protein" [Macaca mulatta (taxid:9544)]

 Score = 154 (59.3 bits), Expect = 7.7e-10, P = 7.7e-10
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query:     4 AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
             A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++  S
Sbjct:   377 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLEDIES 433

GO:0004118 "cGMP-stimulated cyclic-nucleotide phosphodiesterase activity" evidence=ISS

GO:0030553 "cGMP binding" evidence=ISS

UNIPROTKB|F7HZP8 PDE11A "Uncharacterized protein" [Callithrix jacchus (taxid:9483)]

 Score = 154 (59.3 bits), Expect = 7.7e-10, P = 7.7e-10
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query:     4 AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
             A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++  S
Sbjct:   377 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLEDIES 433

GO:0004118 "cGMP-stimulated cyclic-nucleotide phosphodiesterase activity" evidence=ISS

GO:0030553 "cGMP binding" evidence=ISS

MGI|MGI:3036251 Pde11a "phosphodiesterase 11A" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 7.7e-10, P = 7.7e-10
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query:     4 AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
             A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++  S
Sbjct:   377 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLEDIES 433

GO:0003824 "catalytic activity" evidence=IEA

GO:0004112 "cyclic-nucleotide phosphodiesterase activity" evidence=ISO

GO:0004114 "3',5'-cyclic-nucleotide phosphodiesterase activity" evidence=IEA

GO:0004118 "cGMP-stimulated cyclic-nucleotide phosphodiesterase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006198 "cAMP catabolic process" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030552 "cAMP binding" evidence=ISO

GO:0030553 "cGMP binding" evidence=ISO

GO:0043204 "perikaryon" evidence=ISO

GO:0046069 "cGMP catabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0047555 "3',5'-cyclic-GMP phosphodiesterase activity" evidence=IEA

UNIPROTKB|F7B340 PDE11A "Uncharacterized protein" [Equus caballus (taxid:9796)]

 Score = 154 (59.3 bits), Expect = 7.7e-10, P = 7.7e-10
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query:     4 AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
             A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++  S
Sbjct:   377 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLEDIES 433

GO:0004118 "cGMP-stimulated cyclic-nucleotide phosphodiesterase activity" evidence=ISS

GO:0030553 "cGMP binding" evidence=ISS

RGD|621793 Pde11a "phosphodiesterase 11A" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 7.7e-10, P = 7.7e-10
 Identities = 32/57 (56%), Positives = 43/57 (75%)

Query:     4 AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
             A S  + E +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++  S
Sbjct:   377 AASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLEDIES 433

GO:0004112 "cyclic-nucleotide phosphodiesterase activity" evidence=IDA

GO:0004118 "cGMP-stimulated cyclic-nucleotide phosphodiesterase activity" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=IEA

GO:0006198 "cAMP catabolic process" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0030552 "cAMP binding" evidence=IDA

GO:0030553 "cGMP binding" evidence=ISO;IDA

GO:0043204 "perikaryon" evidence=IDA

GO:0046069 "cGMP catabolic process" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0047555 "3',5'-cyclic-GMP phosphodiesterase activity" evidence=IEA

UNIPROTKB|F1NEV1 PDE11A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query:     4 AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
             A S  + + +  LLEVV+DLFEEQT +E++V KIM RAQ+LLKCE  +VLL+++  S
Sbjct:   297 AASRKEYDRSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKCERCSVLLLEDIES 353

GO:0007165 "signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004118 "cGMP-stimulated cyclic-nucleotide phosphodiesterase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9HCR9	PDE11_HUMAN	3, ., 1, ., 4, ., 3, 5	0.5740	0.9	0.0578	yes	N/A
Q8VID6	PDE11_RAT	3, ., 1, ., 4, ., 3, 5	0.5740	0.9	0.0577	yes	N/A
P0C1Q2	PDE11_MOUSE	3, ., 1, ., 4, ., 3, 5	0.5740	0.9	0.0578	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	60
KOG3689|consensus	707		98.48
PF01590	154	GAF: GAF domain; InterPro: IPR003018 This domain i	96.74
PF13492	129	GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_	96.3
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	96.21
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	95.51
PRK11061	748	fused phosphoenolpyruvate-protein phosphotransfera	94.75
smart00065	149	GAF Domain present in phytochromes and cGMP-specif	94.27
PF13185	148	GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_	92.29
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	92.02
COG2203	175	FhlA FOG: GAF domain [Signal transduction mechanis	91.29
PRK05022	509	anaerobic nitric oxide reductase transcription reg	85.24

>KOG3689|consensus

Probab=98.48  E-value=1.2e-07  Score=73.60  Aligned_cols=56  Identities=36%  Similarity=0.536  Sum_probs=53.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678            4 AQSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus         4 ~~~~~e~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +.++.|.+|+++|+|+++.+|+++.+++.++++++.+++++++|+||+++++|++.
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~~~~~  212 (707)
T KOG3689|consen  157 ASSRIERKRNQVLLDLADLMFEEQTDRESIFPKILYTARSLLQCTRCSIQLLDMST  212 (707)
T ss_pred             HHhhhHHHHHHHHhhhhhHHHHHhcchhcccchhhhhhhhhhhhcccceeeecccc
Confidence            46789999999999999999999999999999999999999999999999999865

>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases

Probab=96.74  E-value=0.0016  Score=38.55  Aligned_cols=31  Identities=19%  Similarity=0.548  Sum_probs=28.6

Q ss_pred             cHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           29 SIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        29 sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      |++.++.+++..+..+++++||+++++|.+.
T Consensus         1 Dl~~~l~~~~~~l~~~l~~~~~~i~~~d~~~   31 (154)
T PF01590_consen    1 DLDELLQRILRELAELLGADRASIFLLDPDG   31 (154)
T ss_dssp             SHHHHHHHHHHHHHHHHTESEEEEEEEETTT
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEEEecCC
Confidence            5899999999999999999999999998764

cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....

>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A

Probab=96.30  E-value=0.0042  Score=35.65  Aligned_cols=31  Identities=26%  Similarity=0.580  Sum_probs=27.0

Q ss_pred             cHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           29 SIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        29 sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      |++.+++.++..+..++++++|.||++|++.
T Consensus         1 dl~~l~~~i~~~l~~~~~~~~~~l~~~d~~~   31 (129)
T PF13492_consen    1 DLDELLERILELLRELLGADRAALFLLDEDG   31 (129)
T ss_dssp             -HHHHHHHHHHHHHHHST-SEEEEEEEETTC
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEEEECCC
Confidence            5899999999999999999999999999753

>TIGR01817 nifA Nif-specific regulatory protein

Probab=96.21  E-value=0.0087  Score=44.24  Aligned_cols=46  Identities=17%  Similarity=0.229  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           13 AAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        13 nq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      -..|.++++.+..+.+ ++.++..|+..+..+++|++|+++++|.++
T Consensus         4 L~~L~~is~~l~~~~d-l~~lL~~il~~l~~~l~a~~~~I~L~d~~~   49 (534)
T TIGR01817         4 LAALYEISKILSAPTR-LEKTLANVLNVLSNDLGMRHGLITLSDSEG   49 (534)
T ss_pred             HHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhcCCCEEEEEEECCCC
Confidence            4578889999988766 999999999999999999999999998764

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=95.51  E-value=0.046  Score=41.70  Aligned_cols=45  Identities=7%  Similarity=0.275  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           14 AKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        14 q~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +.|.++++.+-... +++.++..|+..+..+++|++|++++.|.+.
T Consensus       185 ~~L~eIs~~l~s~~-dl~ell~~I~~~i~~~~~a~~~~I~L~d~~~  229 (686)
T PRK15429        185 RILVAITNAVLSRL-DMDELVSEVAKEIHYYFDIDAISIVLRSHRK  229 (686)
T ss_pred             HHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhCCCEEEEEEEECCC
Confidence            78899999998866 5999999999999999999999999998753

>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional

Probab=94.75  E-value=0.047  Score=42.74  Aligned_cols=44  Identities=16%  Similarity=0.264  Sum_probs=38.3

Q ss_pred             HHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           15 KLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        15 ~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      .|.++++.+..... ++.++..|+..+..+++|++|+|+++|.+.
T Consensus         4 ~L~eIs~~L~s~~d-L~e~L~~Iv~~~~~~l~~d~~sI~L~D~~~   47 (748)
T PRK11061          4 RLREIVEKVASAPR-LNEALDILVTETCLAMDTEVCSVYLADHDR   47 (748)
T ss_pred             HHHHHHHHHhccCC-HHHHHHHHHHHHHHHhCCCEEEEEEEECCC
Confidence            36678888877665 999999999999999999999999999754

>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases

Probab=94.27  E-value=0.053  Score=29.86  Aligned_cols=29  Identities=24%  Similarity=0.552  Sum_probs=26.8

Q ss_pred             cHHHHHHHHHHHHHhhhccchhheeeccC
Q psy678           29 SIEQVVVKIMQRAQSLLKCENAAVLLIDE   57 (60)
Q Consensus        29 sid~li~~im~~a~~Ll~aeRcslflvD~   57 (60)
                      +++.++.+++..+...+++++|.++++|.
T Consensus         1 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~   29 (149)
T smart00065        1 DLEELLQTILEELRQLLGADRVLIYLVDE   29 (149)
T ss_pred             CHHHHHHHHHHHHHHHhCCceEEEEEEec
Confidence            46788999999999999999999999997

Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.

>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A

Probab=92.29  E-value=0.17  Score=29.42  Aligned_cols=31  Identities=19%  Similarity=0.384  Sum_probs=27.2

Q ss_pred             cHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           29 SIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        29 sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +++.++..++..+..+++|+.+.++++|.++
T Consensus         3 ~~~ell~~~~~~~~~~~~~~~~~i~l~d~~~   33 (148)
T PF13185_consen    3 DLEELLQQILDALLELTGADAGAIYLYDPDG   33 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHS-SEEEEEEEETTS
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEEEECCC
Confidence            5899999999999999999999999998763

...

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=92.02  E-value=0.29  Score=37.40  Aligned_cols=46  Identities=17%  Similarity=0.319  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           13 AAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        13 nq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      .+.|+++++.+.. +.+++.++..++...+.++.||++.+.|.|..+
T Consensus         8 ~~~l~~is~~~~~-~~~~~~l~~~l~~~~~~~~~ad~~~i~l~d~~~   53 (686)
T PRK15429          8 QQGLFDITRTLLQ-QPDLASLCEALSQLVKRSALADNAAIVLWQAQT   53 (686)
T ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhcccceEEEEEEcCCC
Confidence            4679999888877 556999999999999999999999999999754

>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]

Probab=91.29  E-value=0.65  Score=26.45  Aligned_cols=44  Identities=20%  Similarity=0.377  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCC
Q psy678           14 AKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDES   58 (60)
Q Consensus        14 q~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~   58 (60)
                      ..+.++++.+..... .+.++..++..+...++++||.++.++.+
T Consensus         4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   47 (175)
T COG2203           4 ALLNELAAKIAQDLD-LEEILQAALELLAELLGADRGLIYLLDED   47 (175)
T ss_pred             HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHhhccHHhhheeccc
Confidence            345566666666665 99999999999999999999999999875

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=85.24  E-value=1.6  Score=32.46  Aligned_cols=43  Identities=21%  Similarity=0.393  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccC
Q psy678           14 AKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE   57 (60)
Q Consensus        14 q~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~   57 (60)
                      ..|.++++.|-...+ ++..+..++..+...+.|+.|+|++.|.
T Consensus         4 ~~l~eis~~L~~s~d-~~e~L~~vl~~l~~~l~~~~~~l~l~~~   46 (509)
T PRK05022          4 DALLPIALDLSRGLP-HQDRFQRLLTTLRQVLPCDASALLRLDG   46 (509)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            357889999988885 9999999999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	60
3ibj_A	691	CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE	1e-08
3ibj_A	691	CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE	1e-05
3bjc_A	878	CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5	2e-08
3bjc_A	878	CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5	2e-04
3dba_A	180	CONE CGMP-specific 3',5'-cyclic phosphodiesterase	1e-06
2e4s_A	189	CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod	1e-05

>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Length = 691

 Score = 48.1 bits (114), Expect = 1e-08
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 16  LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE 57
           LL+V  +LF     +  ++ +I+  A++L   E  +V L+D+
Sbjct: 183 LLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQ 224

>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Length = 691

 Score = 39.3 bits (91), Expect = 1e-05
 Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 1  MQRAQSLLK-CENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS 59
          M+  +      +   K+L++  +L++       + +K++Q  Q   +     +LL+ E +
Sbjct: 1  MEDQKGGAAYTDRDRKILQLCGELYD--LDASSLQLKVLQYLQQETRASRCCLLLVSEDN 58

>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Length = 878

 Score = 47.1 bits (111), Expect = 2e-08
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 5   QSLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
            SLL+ +    LL++   +FEEQ S+E ++ KI     S ++ +   + ++DE  S
Sbjct: 325 TSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCS 380

>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Length = 878

 Score = 36.3 bits (83), Expect = 2e-04
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 11  ENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
           +  ++LLE+V D+      +  +  KI      L+  +  ++ L+ E SS
Sbjct: 150 DQCSRLLELVKDISSH-LDVTALCHKIFLHIHGLISADRYSLFLVCEDSS 198

>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Length = 180

 Score = 41.7 bits (98), Expect = 1e-06
 Identities = 12/53 (22%), Positives = 28/53 (52%)

Query: 8  LKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESSS 60
          ++ E    L E++ ++ +E  S+E++V K +QR   LL  +  ++ +    + 
Sbjct: 1  MRLEECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNG 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	60
2zmf_A	189	CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho	99.01
2e4s_A	189	CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod	98.55
3dba_A	180	CONE CGMP-specific 3',5'-cyclic phosphodiesterase	98.41
3k2n_A	177	Sigma-54-dependent transcriptional regulator; PSI-	97.73
3cit_A	160	Sensor histidine kinase; MEGA: 3.30.450.40, struct	97.7
2lb5_A	208	Sensor histidine kinase; PCB, transferase, GAF dom	97.7
1ykd_A	398	Adenylate cyclase; GAF domain, bound cyclic AMP li	97.64
1mc0_A	368	3',5'-cyclic nucleotide phosphodiesterase 2A; GAF	97.62
3ibj_A	691	CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE	97.59
3p01_A	184	Two-component response regulator; PSI-2, midwest c	97.57
3oov_A	169	Methyl-accepting chemotaxis protein, putative; str	97.37
3bjc_A	878	CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5	97.32
3ibj_A	691	CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE	97.32
3trc_A	171	Phosphoenolpyruvate-protein phosphotransferase; si	97.27
3ci6_A	171	Phosphoenolpyruvate-protein phosphotransferase; PE	97.26
1mc0_A	368	3',5'-cyclic nucleotide phosphodiesterase 2A; GAF	97.16
3e0y_A	181	Conserved domain protein; APC87688.2, geobacter su	96.97
2k2n_A	172	Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do	96.89
3bjc_A	878	CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5	96.61
4glq_A	171	Methyl-accepting chemotaxis protein; chromophore,	96.59
2qyb_A	181	Membrane protein, putative; GAF domain, domain of	96.58
3hcy_A	151	Putative two-component sensor histidine kinase PR;	96.28
1ykd_A	398	Adenylate cyclase; GAF domain, bound cyclic AMP li	96.07
3mmh_A	167	FRMSR, methionine-R-sulfoxide reductase; oxidoredu	95.66
2w3g_A	153	DOSS, two component sensor histidine kinase DEVS (	95.55
2vjw_A	149	GAF-B, GAF family protein; histidine kinase, hypox	95.35
3o5y_A	165	Sensor protein; GAF domain, histidine, kinase, PSI	94.01
2ool_A	337	Sensor protein; bacteriophytochrome, photoconversi	93.39
1f5m_A	180	GAF; CGMP binding, signaling protein; 1.90A {Sacch	93.34
1vhm_A	195	Protein YEBR; structural genomics, unknown functio	92.87
3s7o_A	343	Bacteriophytochrome; biliverdin, PAS, GAF, photore	92.02
4e04_A	327	Bacteriophytochrome (light-regulated signal trans	91.94
3nhq_A	505	Bacteriophytochrome; photoreceptor, PAS, signaling	91.87
3zq5_A	520	Phytochrome-like protein CPH1; arginine finger, ta	90.32
3ksh_A	160	Putative uncharacterized protein; FRMSR, free-Met-	88.44
4eho_A	635	Bacteriophytochrome, PAS/PAC sensor; photoreceptor	88.0
3rfb_A	171	Putative uncharacterized protein; FRMSR, GAF, oxid	85.32

>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}

Probab=99.01  E-value=3.4e-10  Score=67.51  Aligned_cols=54  Identities=24%  Similarity=0.371  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678            6 SLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus         6 ~~~e~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      ..-+.++|+.|+++++.++.+..++|.++..|+..+..+++|+||+||++|++.
T Consensus         5 ~~~~~e~~~~Ll~~~~~i~~~~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~   58 (189)
T 2zmf_A            5 SSGQTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKN   58 (189)
T ss_dssp             ---CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCC
Confidence            345677899999999999999999999999999999999999999999999764

>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}

Probab=98.41  E-value=9.8e-08  Score=58.98  Aligned_cols=48  Identities=25%  Similarity=0.469  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCC
Q psy678           11 ENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDES   58 (60)
Q Consensus        11 ~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~   58 (60)
                      +.++.|+++++.|..++++++.++.+|+..+..+++|+||++||+|++
T Consensus         4 ~el~~L~eis~~l~~~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~   51 (180)
T 3dba_A            4 EECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSR   51 (180)
T ss_dssp             HHHHHHHHHHTTSCSSSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCC
Confidence            467899999999999996799999999999999999999999999974

>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}

Probab=97.73  E-value=4.4e-05  Score=44.96  Aligned_cols=49  Identities=8%  Similarity=0.129  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           10 CENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        10 ~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +...+.|.++++.|-...+ ++.++..++..+..+++|++|+++++|++.
T Consensus         2 n~~l~ll~~i~~~l~~~~d-~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~   50 (177)
T 3k2n_A            2 NAALKLMQYIGDAIGTIRD-PQELFRTVTDKLRLLFAFDSAVIITIDRER   50 (177)
T ss_dssp             HHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHTTTCCCSEEEEEEEETTT
T ss_pred             hHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHHHhcCCCeEEEEEEcCCC
Confidence            3556789999999998766 999999999999999999999999999764

>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}

Probab=97.70  E-value=8.9e-05  Score=47.79  Aligned_cols=49  Identities=14%  Similarity=0.199  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678            9 KCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus         9 e~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      ...|-..|++..+.| .++. .+.++..|+..++.+++||||+||+.|.++
T Consensus        10 ra~rLrlL~e~~~~L-~~l~-~~~~l~~il~~a~~~~~~d~gsL~l~d~~~   58 (160)
T 3cit_A           10 RAARLRLLVDTGQEL-IQLP-PEAMRKCVLQRACAFVAMDHGLLLEWGADN   58 (160)
T ss_dssp             HHHHHHHHHHHHHHH-HHSC-HHHHHHHHHHHHHHHTTCSEEEEEECC--C
T ss_pred             HHHHHHHHHHHHHHH-hcCC-HHHHHHHHHHHHHHHhccCeeEEEEEcCCC
Confidence            445778899999999 6666 599999999999999999999999999753

>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*

Probab=97.70  E-value=1.7e-05  Score=48.93  Aligned_cols=51  Identities=12%  Similarity=0.260  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678            8 LKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus         8 ~e~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      .+.++.+.|.++++.|-...+ ++.++..++..++.+++|+||+++++|++.
T Consensus        10 ~~~~~~~~L~~i~~~i~~~~d-l~~il~~~~~~l~~~l~~dr~~i~~~d~~~   60 (208)
T 2lb5_A           10 ARPSRDALINRITHQIRQSLE-LDQILRATVEEVRAFLGTDRVKVYRFDPEG   60 (208)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTS
T ss_pred             hHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHCCCEEEEEEEcCCC
Confidence            345566789999998887665 999999999999999999999999999753

>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}

Probab=97.64  E-value=0.00011  Score=49.15  Aligned_cols=53  Identities=23%  Similarity=0.419  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678            7 LLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus         7 ~~e~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      ..+.++.+.|+++++.+.....+++.++..++..+..+++|++|+++++|+++
T Consensus       192 ~~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~  244 (398)
T 1ykd_A          192 TQKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDEAKELMNADRSTLWLIDRDR  244 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCC
Confidence            34566778899999999995556999999999999999999999999999763

>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1

Probab=97.62  E-value=0.00015  Score=47.66  Aligned_cols=51  Identities=24%  Similarity=0.370  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccC
Q psy678            7 LLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE   57 (60)
Q Consensus         7 ~~e~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~   57 (60)
                      +...++.+.|.++++.+.....+++.++..++..+..+++|++|+++++|+
T Consensus       174 ~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~  224 (368)
T 1mc0_A          174 QKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQ  224 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEEEEEEeC
Confidence            344566789999999999987789999999999999999999999999986

>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}

Probab=97.59  E-value=5.7e-05  Score=55.29  Aligned_cols=51  Identities=24%  Similarity=0.370  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccC
Q psy678            7 LLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE   57 (60)
Q Consensus         7 ~~e~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~   57 (60)
                      ..+.++.+.|+++++.++++..+++.++..++..+..+++|++|+|+++|.
T Consensus       174 ~~~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~  224 (691)
T 3ibj_A          174 QKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQ  224 (691)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEeC
Confidence            345678899999999999988889999999999999999999999999986

>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}

Probab=97.57  E-value=0.00016  Score=43.70  Aligned_cols=51  Identities=10%  Similarity=0.082  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccC
Q psy678            6 SLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDE   57 (60)
Q Consensus         6 ~~~e~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~   57 (60)
                      ...+.++.+.|.++++.+-... +++.++..++..+..+++|+||++++++.
T Consensus        22 l~~~~~~~~~L~~is~~l~~~~-dl~~il~~i~~~l~~~l~~d~~~i~l~~~   72 (184)
T 3p01_A           22 LRRANAQMSLLTVLVQVTQASN-SLEAILTPIATAFAESFAVNACILQMLEG   72 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHHHTCSEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhCCCeEEEEEecC
Confidence            3455667788889998887765 59999999999999999999999999864

>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}

Probab=97.37  E-value=0.00014  Score=42.14  Aligned_cols=45  Identities=11%  Similarity=0.259  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           14 AKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        14 q~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +.|.++++.+... .+++.++..++..+..+++|+||+++++|++.
T Consensus         2 ~~L~~i~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~   46 (169)
T 3oov_A            2 NAFHQISSRIQKS-IDVDEVLRLCAEGLHDVLGYERVNILMADTAR   46 (169)
T ss_dssp             ----CHHHHHHHC-CCHHHHHHHHHHHHHHTTCCSEEEEEEECTTS
T ss_pred             chHHHHHHHHhhh-cCHHHHHHHHHHHHHHhhCCceEEEEEEeCCC
Confidence            4577788888776 45999999999999999999999999999753

>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*

Probab=97.32  E-value=3.2e-05  Score=58.52  Aligned_cols=53  Identities=30%  Similarity=0.520  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCC
Q psy678            6 SLLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDES   58 (60)
Q Consensus         6 ~~~e~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~   58 (60)
                      ...+.++++.|+++++.|+.+..+++.++..|+..+..+++|++|+||++|++
T Consensus       326 ~~~~~~~~~~L~~ls~~L~~~s~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~  378 (878)
T 3bjc_A          326 SLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDED  378 (878)
T ss_dssp             -----------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhCcceeEEEEEcCc
Confidence            45567788999999999999988899999999999999999999999999864

>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}

Probab=97.32  E-value=0.00012  Score=53.54  Aligned_cols=50  Identities=18%  Similarity=0.376  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678            8 LKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus         8 ~e~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      .+.+|...|+++++.|. ++ +++.++.+|+..+..+++|+||++|++|+++
T Consensus         9 ~~~e~~~~L~~i~~~ls-~l-dl~~ll~~il~~l~~~l~ad~~~i~L~d~~~   58 (691)
T 3ibj_A            9 AYTDRDRKILQLCGELY-DL-DASSLQLKVLQYLQQETRASRCCLLLVSEDN   58 (691)
T ss_dssp             -CTTHHHHHHHHHHHCC-CS-SHHHHHHHHHHHHHHHTTBSCEEEEEECTTS
T ss_pred             ChHHHHHHHHHHHHHHH-hc-cHHHHHHHHHHHHHHHhCCCEEEEEEEECCC
Confidence            45577788999999999 44 5999999999999999999999999999764

>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}

Probab=97.27  E-value=0.00053  Score=39.67  Aligned_cols=47  Identities=13%  Similarity=0.241  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           12 NAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        12 rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      .-+.|.++++.+-...+ ++.++..++..+..+++|++|+++++|++.
T Consensus         6 ~L~~L~~i~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~   52 (171)
T 3trc_A            6 MLKILRQITQEVNAAPN-LEQALKLVVVRLCEALPADACSLFICDDVH   52 (171)
T ss_dssp             HHHHHHHHHHHHHHCSS-HHHHHHHHHHHHHHHTTCSEEEEEEEETTT
T ss_pred             HHHHHHHHHHHHhcccC-HHHHHHHHHHHHHHHhCCcEEEEEEEECCC
Confidence            34678889988887655 999999999999999999999999999754

>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}

Probab=97.26  E-value=0.0006  Score=38.80  Aligned_cols=48  Identities=15%  Similarity=0.282  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCC
Q psy678           10 CENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDES   58 (60)
Q Consensus        10 ~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~   58 (60)
                      .++.+.|.++++.+-... +++.++..++..+..+++|++|.++++|++
T Consensus         6 ~~~l~~l~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~   53 (171)
T 3ci6_A            6 NMQLDTLRRIVQEINSSV-SLHDSLDIMVNQVADAMKVDVCSIYLLDER   53 (171)
T ss_dssp             CHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTCSEEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            456678889999888764 599999999999999999999999999975

>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1

Probab=97.16  E-value=0.00037  Score=45.76  Aligned_cols=46  Identities=20%  Similarity=0.353  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           12 NAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        12 rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      ....|+++++.+ .+ .+++.++..++..+..+++|++|++|++|.+.
T Consensus        12 ~~~~l~~l~~~l-~~-~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~   57 (368)
T 1mc0_A           12 HDRKILQLCGEL-FD-LDATSLQLKVLQYLQQETQATHCCLLLVSEDN   57 (368)
T ss_dssp             HHHHHHHHHHTC-CC-SSHHHHHHHHHHHHHHHSCEEEEEEEEECSSS
T ss_pred             chHHHHHHHHHH-hh-hhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCC
Confidence            456799999999 54 46999999999999999999999999999754

>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}

Probab=96.97  E-value=0.00023  Score=41.49  Aligned_cols=47  Identities=13%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCC
Q psy678           11 ENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDES   58 (60)
Q Consensus        11 ~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~   58 (60)
                      ++.+.|.++++.+.... +++.++..++..+..+++|++|+++++|++
T Consensus        12 ~~l~~l~~i~~~l~~~~-~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~   58 (181)
T 3e0y_A           12 LEIISLEEISMLVSSDF-DLPEVLQHVTAKVATQLKVSVCNIYLREGD   58 (181)
T ss_dssp             TTCCCHHHHHHHHSTTS-CHHHHHHHHHHHHHHHTTCSCEEEEEEETT
T ss_pred             HHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            34467888888887765 599999999999999999999999999975

>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*

Probab=96.89  E-value=0.00055  Score=41.11  Aligned_cols=30  Identities=13%  Similarity=0.341  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           30 IEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        30 id~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      ++.++..++..++.+++||||+++++|++.
T Consensus         1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~   30 (172)
T 2k2n_A            1 LDQILRATVEEVRAFLGTDRVKVYRFDPEG   30 (172)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEEECCTTS
T ss_pred             CHHHHHHHHHHHHHHhCCCeEEEEEECCCC
Confidence            368899999999999999999999999763

>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*

Probab=96.61  E-value=0.00032  Score=53.06  Aligned_cols=51  Identities=20%  Similarity=0.357  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCC
Q psy678            7 LLKCENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDES   58 (60)
Q Consensus         7 ~~e~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~   58 (60)
                      ..+.++...|+++++.|..... ++.++..|+..+..+++|+||+||++|.+
T Consensus       146 ~~~~~~l~~L~eis~~L~~~ld-l~~ll~~il~~l~~~l~ad~~~I~L~d~~  196 (878)
T 3bjc_A          146 HDEGDQCSRLLELVKDISSHLD-VTALCHKIFLHIHGLISADRYSLFLVCED  196 (878)
T ss_dssp             ----------------------------------------------------
T ss_pred             hcchHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            3455677889999999998765 99999999999999999999999999975

>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*

Probab=96.59  E-value=0.0016  Score=40.43  Aligned_cols=38  Identities=18%  Similarity=0.383  Sum_probs=30.2

Q ss_pred             HHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           21 HDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        21 ~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      ..|=..+ ++++++..+...++.+++||||.+|.+|++.
T Consensus         4 ~~Ir~sl-dl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~   41 (171)
T 4glq_A            4 VQLSELR-DRQAIFETLVAKGRELLACDRVIVYAFDDNY   41 (171)
T ss_dssp             ----CTT-HHHHHHHHHHHHHHHHHTCSEEEEEEECTTC
T ss_pred             HHHhhcC-CHHHHHHHHHHHHHHHHCCCeEEEEEEeCCC
Confidence            3444444 4999999999999999999999999999764

>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}

Probab=96.58  E-value=0.0017  Score=38.35  Aligned_cols=45  Identities=16%  Similarity=0.169  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCC
Q psy678           13 AAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDES   58 (60)
Q Consensus        13 nq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~   58 (60)
                      |..|.++++.+-...+ ++.++..++..+..++++++|+++++|..
T Consensus         2 ~~~L~~i~~~l~~~~~-~~~~l~~i~~~~~~~~~~~~~~i~l~~~~   46 (181)
T 2qyb_A            2 NAVRLRASEIMNRTLD-LQIIMDDLLNLLLKEFKLDLAVIRLVDEK   46 (181)
T ss_dssp             -------CHHHHHHHH-HHHHHHHHHHHHHHHSSCSEEEEEEECTT
T ss_pred             chHHHHHHHHHHhccC-HHHHHHHHHHHHHHHhCCcEEEEEEECCC
Confidence            5678888888887665 99999999999999999999999999653

>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}

Probab=96.28  E-value=0.0024  Score=36.75  Aligned_cols=31  Identities=35%  Similarity=0.633  Sum_probs=28.6

Q ss_pred             ccHHHHHHHHHHHHHhhhccchhheeeccCC
Q psy678           28 TSIEQVVVKIMQRAQSLLKCENAAVLLIDES   58 (60)
Q Consensus        28 ~sid~li~~im~~a~~Ll~aeRcslflvD~~   58 (60)
                      .+++.++..++..+..+++|++|+++++|++
T Consensus         2 ~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~   32 (151)
T 3hcy_A            2 NAIEEVYEATLDAIQGALNCDRASILLFDEA   32 (151)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCSEEEEEEECTT
T ss_pred             ccHHHHHHHHHHHHHHhhcCCEEEEEEEcCC
Confidence            3678999999999999999999999999975

>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}

Probab=96.07  E-value=0.011  Score=39.33  Aligned_cols=44  Identities=18%  Similarity=0.381  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHhhhhccHHHHHH----HHHHHHHhhhccchhheeeccCCC
Q psy678           14 AKLLEVVHDLFEEQTSIEQVVV----KIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        14 q~LL~la~~iFee~~sid~li~----~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +.|.++.+.+ .. .+++.++.    .|+..+..+++|++|+||++|.+.
T Consensus         9 ~~l~~~~~~l-~~-~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~   56 (398)
T 1ykd_A            9 QIVHQTLSML-DS-HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEK   56 (398)
T ss_dssp             HHHHHHHHHH-TT-SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTT
T ss_pred             HHHHHHHHHH-Hh-ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCC
Confidence            4566666666 33 55666555    455559999999999999999753

>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0

Probab=95.66  E-value=0.029  Score=35.13  Aligned_cols=45  Identities=11%  Similarity=0.132  Sum_probs=36.8

Q ss_pred             HHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           15 KLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        15 ~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      .||.-.+.+.+.-.+++..+..+.......++++||++||+|+++
T Consensus        17 ~ll~~i~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~   61 (167)
T 3mmh_A           17 EVLPQIESVVADETDWVANLANTAAVLKEAFGWFWVGFYLVDTRS   61 (167)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTT
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCC
Confidence            345555555566678999999999999999999999999998653

>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*

Probab=95.55  E-value=0.009  Score=33.61  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=28.2

Q ss_pred             ccHHHHHHHHHHHHHhhhccchhheeeccCC
Q psy678           28 TSIEQVVVKIMQRAQSLLKCENAAVLLIDES   58 (60)
Q Consensus        28 ~sid~li~~im~~a~~Ll~aeRcslflvD~~   58 (60)
                      .+++.++..++..+..+++|++|+++++|++
T Consensus         5 ~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~   35 (153)
T 2w3g_A            5 PDLEATLRAIVHSATSLVDARYGAMEVHDRQ   35 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred             cCHHHHHHHHHHHHHHHhCCCEEEEEEECCC
Confidence            4689999999999999999999999999954

>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A

Probab=95.35  E-value=0.0094  Score=35.74  Aligned_cols=30  Identities=13%  Similarity=0.124  Sum_probs=26.5

Q ss_pred             cHHHHHHHHHHHHHhhhccchhheeeccCC
Q psy678           29 SIEQVVVKIMQRAQSLLKCENAAVLLIDES   58 (60)
Q Consensus        29 sid~li~~im~~a~~Ll~aeRcslflvD~~   58 (60)
                      +++.++..|+..+..+++|++|+|+++|+.
T Consensus         1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~   30 (149)
T 2vjw_A            1 DPATVFRLVAAEALTLTGADGTLVAVPADP   30 (149)
T ss_dssp             CTHHHHHHHHHHHHHHHCCSEEEEEEECC-
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEEEcCC
Confidence            357889999999999999999999999864

>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}

Probab=94.01  E-value=0.035  Score=34.08  Aligned_cols=30  Identities=13%  Similarity=0.454  Sum_probs=27.8

Q ss_pred             cHHHHHHHHHHHHHhhhccchhheeeccCC
Q psy678           29 SIEQVVVKIMQRAQSLLKCENAAVLLIDES   58 (60)
Q Consensus        29 sid~li~~im~~a~~Ll~aeRcslflvD~~   58 (60)
                      |+|.++..++..++.++.|+++++++++..
T Consensus         5 sldevL~~v~~~l~~~~~~d~~~l~L~~~~   34 (165)
T 3o5y_A            5 SLDDIINNMIDKLKLLVHFDRISFLLLANE   34 (165)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEEEEEETT
T ss_pred             CHHHHHHHHHHHHHHhcCcceEEEEEEECC
Confidence            599999999999999999999999999753

>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9

Probab=93.39  E-value=0.16  Score=35.39  Aligned_cols=46  Identities=4%  Similarity=-0.003  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           13 AAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        13 nq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      .+.+-.++..|=... +++.++..+...++.+++||||.+|=.|++.
T Consensus       146 ~~ll~~i~~~Ir~sl-~l~~il~~tv~evr~ll~~DRV~IYrF~~d~  191 (337)
T 2ool_A          146 FRSVRVAIRRLQTAA-DLPTACWIAASEVRRITGFDRIKVYQFAADW  191 (337)
T ss_dssp             HHHHHHHHHHHHTCC-SHHHHHHHHHHHHHHHHCCSEEEEEEECTTS
T ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhCCCeeEEEEEcCCC
Confidence            334555566665544 4999999999999999999999999888764

>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*

Probab=93.34  E-value=0.24  Score=30.83  Aligned_cols=47  Identities=13%  Similarity=-0.026  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhh-----ccchhheeeccCC
Q psy678           12 NAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLL-----KCENAAVLLIDES   58 (60)
Q Consensus        12 rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll-----~aeRcslflvD~~   58 (60)
                      ..+.++.-.+.+.....+++..+..+...+...+     .+++|++|++|..
T Consensus        24 ~~~~ll~~l~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~   75 (180)
T 1f5m_A           24 ILEQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQAS   75 (180)
T ss_dssp             HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSS
T ss_pred             HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecC
Confidence            3456666777777777889999999999999998     8999999999874

>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1

Probab=92.87  E-value=0.15  Score=32.60  Aligned_cols=44  Identities=16%  Similarity=0.102  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhh-ccchhheeeccC
Q psy678           13 AAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLL-KCENAAVLLIDE   57 (60)
Q Consensus        13 nq~LL~la~~iFee~~sid~li~~im~~a~~Ll-~aeRcslflvD~   57 (60)
                      ...|-++++ +.....+++..+..+...+...+ ++++|++|++|.
T Consensus        28 ~~ll~~l~~-ll~~~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~   72 (195)
T 1vhm_A           28 ADLNRDFNA-LMAGETSFLATLANTSALLYERLTDINWAGFYLLED   72 (195)
T ss_dssp             HHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEET
T ss_pred             HHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            344444444 44555679999999999999999 999999999985

>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*

Probab=92.02  E-value=0.29  Score=34.50  Aligned_cols=45  Identities=9%  Similarity=0.098  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           14 AKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        14 q~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +.+-.++..|=.. .+++.++..+...++.++++|||.+|=.|++.
T Consensus       152 ~ll~~i~~rIr~s-ldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~  196 (343)
T 3s7o_A          152 HALRNAMFALESA-PNLRALAEVATQTVRELTGFDRVMLYKFAPDA  196 (343)
T ss_dssp             HHHHHHHHHHHHC-CSHHHHHHHHHHHHHHHHCCSEEEEEEECTTS
T ss_pred             HHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCC
Confidence            3444555556554 46999999999999999999999999888764

>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}

Probab=91.94  E-value=0.27  Score=34.36  Aligned_cols=43  Identities=7%  Similarity=0.151  Sum_probs=34.7

Q ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           16 LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        16 LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +-.++..|=... +++.++..+...++.++++|||.+|=.|++.
T Consensus       136 l~~i~~rIr~sl-dl~~il~~av~evr~llg~DRVmIYrF~~d~  178 (327)
T 4e04_A          136 VRSAIRRLQAAE-TLESACAAAAQEVREITGFDRVMIYRFASDF  178 (327)
T ss_dssp             HHHHHHHHHHCC-SHHHHHHHHHHHHHHHHCCSEEEEEEECTTS
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHCCCeEEEEEEcCCC
Confidence            344555554444 6999999999999999999999999888764

>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*

Probab=91.87  E-value=0.31  Score=35.70  Aligned_cols=45  Identities=0%  Similarity=0.082  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           14 AKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        14 q~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +.+-.++..|=... +++.++..+...++.+++||||.+|=.|++.
T Consensus       125 ~ll~~i~~~Ir~sl-~l~~il~~~v~evr~ll~~DRV~IYrF~~d~  169 (505)
T 3nhq_A          125 LNAQRIIAQVQLHN-DTASLLSNVTDELRRMTGYDRVMAYRFRHDD  169 (505)
T ss_dssp             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCSEEEEEEECTTS
T ss_pred             HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhCCCeEEEEEecCCC
Confidence            34555666666654 5999999999999999999999999988764

>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*

Probab=90.32  E-value=0.45  Score=35.01  Aligned_cols=43  Identities=9%  Similarity=0.193  Sum_probs=35.2

Q ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           16 LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        16 LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +-.++..|=.. .+++.++..+...++.+++||||.+|-.|++.
T Consensus       140 l~~i~~~Ir~s-l~l~~il~~~v~evr~ll~~DRVmIYrF~~d~  182 (520)
T 3zq5_A          140 ANAALNRLRQQ-ANLRDFYDVIVEEVRRMTGFDRVMLYRFDENN  182 (520)
T ss_dssp             HHHHHHHHHHS-CCHHHHHHHHHHHHHHHHCCSEEEEEEECTTS
T ss_pred             HHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCCEEEEEEEcCCC
Confidence            44455555554 56999999999999999999999999988764

>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*

Probab=88.44  E-value=0.6  Score=29.18  Aligned_cols=45  Identities=11%  Similarity=0.194  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhc-cchhheeeccCC
Q psy678           14 AKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLK-CENAAVLLIDES   58 (60)
Q Consensus        14 q~LL~la~~iFee~~sid~li~~im~~a~~Ll~-aeRcslflvD~~   58 (60)
                      +.|+.-.+.+.++-.++...+..+.+.....+. +++|++|++|..
T Consensus        16 ~~ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~~   61 (160)
T 3ksh_A           16 TLLKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQN   61 (160)
T ss_dssp             HHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEETT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcccCCEEEEEEEECC
Confidence            446666777777788999999999999999997 999999999853

>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}

Probab=85.32  E-value=2.1  Score=26.95  Aligned_cols=45  Identities=20%  Similarity=0.118  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhc-cchhheeeccCC
Q psy678           14 AKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLK-CENAAVLLIDES   58 (60)
Q Consensus        14 q~LL~la~~iFee~~sid~li~~im~~a~~Ll~-aeRcslflvD~~   58 (60)
                      +.||.-.+.+.+.-.++...+..+.+.....+. +++|++|++|..
T Consensus        17 ~~ll~~l~~ll~~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~~   62 (171)
T 3rfb_A           17 QMLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGK   62 (171)
T ss_dssp             HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECSS
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHccCCCEEEEEEEECC
Confidence            346666677777788899999999999988887 999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	60
d1mc0a1	187	3',5'-cyclic nucleotide phosphodiesterase 2A, GAF	98.28
d1mc0a2	154	3',5'-cyclic nucleotide phosphodiesterase 2A, GAF	97.91
d2k2na1	170	Sensor protein CYB2465 {Synechococcus sp. [TaxId:	96.33
d3c2wa1	192	Bacteriophytochrome BphP {Pseudomonas aeruginosa [	95.97
d2o9ca1	187	Bacteriophytochrome BphP {Deinococcus radiodurans	95.7
d2oola1	194	Sensor protein PhyB2 {Rhodopseudomonas palustris [	95.6
d2veaa1	196	Phytochrome-like protein Cph1 {Synechocystis sp. p	94.94

>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=3.1e-07  Score=55.38  Aligned_cols=48  Identities=21%  Similarity=0.430  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           10 CENAAKLLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        10 ~~rnq~LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      .++++.+|.+++.|++  .+++.++++|+..+..+++|+||++|++|+++
T Consensus         2 ~~~~~~ll~l~~~l~~--ld~~~l~~~il~~~~~~~~ad~~~i~L~d~~~   49 (187)
T d1mc0a1           2 TDHDRKILQLCGELFD--LDATSLQLKVLQYLQQETQATHCCLLLVSEDN   49 (187)
T ss_dssp             HHHHHHHHHHHHTCCC--SSHHHHHHHHHHHHHHHSCEEEEEEEEECSSS
T ss_pred             ChHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhCCCEEEEEEEECCC
Confidence            3678889999999985  56999999999999999999999999999864

>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=3.4e-06  Score=47.72  Aligned_cols=31  Identities=23%  Similarity=0.459  Sum_probs=29.0

Q ss_pred             cHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           29 SIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        29 sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      |+|.++.+|+..++.+++||||++|++|++.
T Consensus         1 Dld~ll~~i~~~~~~~~~ad~~~i~l~d~~~   31 (154)
T d1mc0a2           1 DVSVLLQEIITEARNLSNAEICSVFLLDQNE   31 (154)
T ss_dssp             CHHHHHHHHHHHHHHHHTEEEEEEEEECSSS
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEEEECCc
Confidence            5899999999999999999999999999764

>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: Sensor protein CYB2465
species: Synechococcus sp. [TaxId: 1131]

Probab=96.33  E-value=0.001  Score=39.00  Aligned_cols=30  Identities=13%  Similarity=0.341  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           30 IEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        30 id~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +|+++..+...++.++++|||.+|-.|++.
T Consensus         1 L~~il~~av~el~~~l~~dRv~iy~f~~d~   30 (170)
T d2k2na1           1 LDQILRATVEEVRAFLGTDRVKVYRFDPEG   30 (170)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEEECCTTS
T ss_pred             CHHHHHHHHHHHHHHhCCCeEEEEEEcCCC
Confidence            478899999999999999999999998764

>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: Bacteriophytochrome BphP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.97  E-value=0.0026  Score=38.79  Aligned_cols=40  Identities=0%  Similarity=0.115  Sum_probs=33.0

Q ss_pred             HHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           19 VVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        19 la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +...|=..+ |++.++..+...++.+++||||.+|-.|.+.
T Consensus        13 i~~~Ir~sl-dl~~Il~ttv~evr~lL~~DRV~IYqf~~d~   52 (192)
T d3c2wa1          13 IIAQVQLHN-DTASLLSNVTDELRRMTGYDRVMAYRFRHDD   52 (192)
T ss_dssp             HHHHHHHCC-CHHHHHHHHHHHHHHHTCCSEEEEEEECTTS
T ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHHHhCCCeEEEEEECCCC
Confidence            344555544 5999999999999999999999999888764

>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: Bacteriophytochrome BphP
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.70  E-value=0.0091  Score=36.53  Aligned_cols=43  Identities=9%  Similarity=0.110  Sum_probs=34.7

Q ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           16 LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        16 LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      |-.+...|=... ++++++..+...++.+++||||.++=+|.+.
T Consensus         6 l~~~~~~ir~s~-dl~~Il~tav~evr~~L~~DRV~IYrf~~d~   48 (187)
T d2o9ca1           6 LRNAMFALESAP-NLRALAEVATQTVRELTGFDRVMLYKFAPDA   48 (187)
T ss_dssp             HHHHHHHHHHCC-SHHHHHHHHHHHHHHHHCCSEEEEEEECTTS
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCCCEeEEEEECCCC
Confidence            444555555544 5999999999999999999999999888754

>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: Sensor protein PhyB2
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=95.60  E-value=0.01  Score=35.97  Aligned_cols=43  Identities=5%  Similarity=0.015  Sum_probs=34.6

Q ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           16 LLEVVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        16 LL~la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      |=.+...|=..++ ++.++..+...++.+++||||.+|-++++.
T Consensus        10 l~~i~~~Ir~sld-l~~Il~tav~eir~~L~~DRv~Iy~f~~~~   52 (194)
T d2oola1          10 VRVAIRRLQTAAD-LPTACWIAASEVRRITGFDRIKVYQFAADW   52 (194)
T ss_dssp             HHHHHHHHHTCCS-HHHHHHHHHHHHHHHHCCSEEEEEEECTTS
T ss_pred             HHHHHHHHHhcCC-HHHHHHHHHHHHHHHHCCCEEEEEEEcCCC
Confidence            3445556655444 999999999999999999999999887653

>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: GAF domain-like
family: GAF domain
domain: Phytochrome-like protein Cph1
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.94  E-value=0.013  Score=35.83  Aligned_cols=40  Identities=10%  Similarity=0.235  Sum_probs=30.3

Q ss_pred             HHHHHhhhhccHHHHHHHHHHHHHhhhccchhheeeccCCC
Q psy678           19 VVHDLFEEQTSIEQVVVKIMQRAQSLLKCENAAVLLIDESS   59 (60)
Q Consensus        19 la~~iFee~~sid~li~~im~~a~~Ll~aeRcslflvD~~~   59 (60)
                      +...|=+.+ +++.++..+...++.+++||||.+|=.|++.
T Consensus        13 ii~~Ir~Sl-dl~~Il~tav~eir~lL~~DRV~iy~f~~d~   52 (196)
T d2veaa1          13 ALNRLRQQA-NLRDFYDVIVEEVRRMTGFDRVMLYRFDENN   52 (196)
T ss_dssp             HHHCC-----CHHHHHHHHHHHHHHHHCCSEEEEEEECTTS
T ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHHHHCCCeEEEEEECCCC
Confidence            344444444 4999999999999999999999998887654