Psyllid ID: psy6849

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MPAVERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKGVKRKFFTEALQEIECDFGTPESRANLLPSESTPKPEATESQAGSDNEGNLVIDEGSEKKAAPKPKTSTPRVSEAMDVDTPNYHHKPSPVLKVTTSGRKIKPKKTFDPDDNDSTFSSHSGGFKEQSPIPGTENALIKASVCRIKTVDGKLVLLDINKFTPPENCKTEKSINLWKMNKINEFKQIREKVEEGEPVKEEYAKIIEEQCQPEVQAELEANEKALKTQLKLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQLVTFNDVTRNMPAHDLFSLCEDPTTTAPS
ccccccccccccEEEEEcccccccccEEcccccccccccEEEEEEEccccEEccccccccccHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHcHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccc
ccccccccccccEEEEEEccccccccEEcccccccccccccEEEEEcccccccccccHcccHHHHHHHcccccHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHEEEEcccccccccc
mpaverkfktnDKVFAKvrgyppwpariegladetpnrlKYHIFFYGtretgicrqdelfpytefkdkygkgvkRKFFTEALQEIEcdfgtpesranllpsestpkpeatesqagsdnegnlvidegsekkaapkpktstprvseamdvdtpnyhhkpspvlkvttsgrkikpkktfdpddndstfsshsggfkeqspipgtenALIKASVCriktvdgklvlldinkftppenckteksINLWKMNKINEFKQIREKVEEGEPVKEEYAKIIEEQCQPEVQAELEANEKALKTQLKLEVCILDIDlrikdsiglehaDCDECLKALDdlinlpitplvlkkhpeivDTCRRLQRYTGNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNlftvpagetfwDTFSKQLVTFNdvtrnmpahdlfslcedptttaps
mpaverkfktndkvfakvrgyppwpariegladetpnRLKYHIFFYGtretgicrqDELFPYTEFKDKYGKGVKRKFFTEALQEIECDFGTPESRANLLPSEStpkpeatesqagsdnegnlvidegsekkaapkpktstprvseamdvdtpnyhhkpspvlkvttsgrkikpkktfdpddndstfsshsggfkeqspipGTENALIKASVCRIKTVDGKLVlldinkftppenckteksinlwkmnkINEFKQIREKVEEGEPVKEEYAKIIEEQCQPEVQAELEANEKALKTQLKLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPitplvlkkhpeivdTCRRLQRYTGNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQLVTFNDVTRNMPAhdlfslcedptttaps
MPAVERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKGVKRKFFTEALQEIECDFGTPESRANLLPSESTPKPEATESQAGSDNEGNLVIDEGSEkkaapkpkTSTPRVSEAMDVDTPNYHHKPSPVLKVTTSGRKIKPKKTFDPDDNDSTFSSHSGGFKEQSPIPGTENALIKASVCRIKTVDGKLVLLDINKFTPPENCKTEKSINLWKMNKINEFKQIRekveegepvkeeYAKIIEEQCQPEVQAELEANEKALKTQLKLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQLVTFNDVTRNMPAHDLFSLCEDPTTTAPS
************KVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKGVKRKFFTEALQEIECDF******************************************************************************************************************NALIKASVCRIKTVDGKLVLLDINKFTPPENCKTEKSINLWKMNKINEFKQI*************YAKII****************KALKTQLKLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQLVTFNDVTRNMPAHDLFSLC*********
*****RK*KTNDKVFAKVRGYPPWPARIEGL****PNRLKYHIFFYGTRETGICRQDELFPYTEF****************LQEIECDFG***********************************************************************************************************************************************************************************************************************************ADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAE********************KADHVYNKFKNLFTVPAGETFWDTFSKQLVTFNDVTRNMPAHDLF************
MPAVERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKGVKRKFFTEALQEIECDFGTPESRANLL******************NEGNLVIDEG******************AMDVDTPNYHHKPSPVLKVTTSGRKIKPKKTFDPD*******************PGTENALIKASVCRIKTVDGKLVLLDINKFTPPENCKTEKSINLWKMNKINEFKQIREKVEEGEPVKEEYAKIIEEQCQPEVQAELEANEKALKTQLKLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQLVTFNDVTRNMPAHDLFSLCE********
*****RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKGVKRKFFTEALQEIECDFG*************************************************************************************************************************CRIKTVDGKLVLLDINKFTPPENCKTEKSINLWKMNKINEFKQIREKVEE**********IIEEQCQPEVQAELEANEKALKTQLKLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQLVTFNDVTRNMPAHDLFSLCED*******
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MPAVERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKGVKRKFFTEALQEIECDFGTPESRANLLPSESTPKPEATESQAGSDNEGNLVIDEGSEKKAAPKPKTSTPRVSEAMDVDTPNYHHKPSPVLKVTTSGRKIKPKKTFDPDDNDSTFSSHSGGFKEQSPIPGTENALIKASVCRIKTVDGKLVLLDINKFTPPENCKTEKSINLWKMNKINEFKQIREKVEEGEPVKEEYAKIIEEQCQPEVQAELEANEKALKTQLKLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQLVTFNDVTRNMPAHDLFSLCEDPTTTAPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query439 2.2.26 [Sep-21-2011]
Q9Y3E1203 Hepatoma-derived growth f yes N/A 0.287 0.620 0.419 2e-18
P51859237 Hepatoma-derived growth f yes N/A 0.280 0.518 0.410 4e-18
Q9JMG7202 Hepatoma-derived growth f no N/A 0.287 0.623 0.419 8e-18
Q923W4202 Hepatoma-derived growth f yes N/A 0.287 0.623 0.419 8e-18
Q3UMU9 669 Hepatoma-derived growth f no N/A 0.234 0.153 0.473 6e-17
Q7Z4V5 671 Hepatoma-derived growth f no N/A 0.179 0.117 0.555 1e-16
Q6P4K1 643 Hepatoma-derived growth f no N/A 0.207 0.141 0.5 1e-16
Q8MJG1 530 PC4 and SFRS1-interacting no N/A 0.357 0.296 0.359 1e-16
Q925G1 669 Hepatoma-derived growth f no N/A 0.175 0.115 0.554 1e-16
Q32N87 642 Hepatoma-derived growth f N/A N/A 0.207 0.141 0.489 2e-16
>sp|Q9Y3E1|HDGR3_HUMAN Hepatoma-derived growth factor-related protein 3 OS=Homo sapiens GN=HDGFRP3 PE=1 SV=1 Back     alignment and function desciption
 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 77/131 (58%), Gaps = 5/131 (3%)

Query: 6   RKFKTNDKVFAKVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYT 63
           R++K  D VFAK++GYP WPARI+ L +    P   KY IFF+GT ET      +LFPY 
Sbjct: 7   REYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYK 66

Query: 64  EFKDKYGKGVKRKFFTEALQEIECDFGTPESRANLLPSESTPKPE---ATESQAGSDNEG 120
           E+KDK+GK  KRK F E L EIE + G   +    +  +S+ + E      + A S+ EG
Sbjct: 67  EYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEG 126

Query: 121 NLVIDEGSEKK 131
           + V ++G  K+
Sbjct: 127 DRVEEDGKGKR 137
Enhances DNA synthesis and may play a role in cell proliferation.
Homo sapiens (taxid: 9606)
>sp|P51859|HDGF_MOUSE Hepatoma-derived growth factor OS=Mus musculus GN=Hdgf PE=1 SV=2 Back     alignment and function description
>sp|Q9JMG7|HDGR3_MOUSE Hepatoma-derived growth factor-related protein 3 OS=Mus musculus GN=Hdgfrp3 PE=1 SV=2 Back     alignment and function description
>sp|Q923W4|HDGR3_RAT Hepatoma-derived growth factor-related protein 3 OS=Rattus norvegicus GN=Hdgfrp3 PE=2 SV=1 Back     alignment and function description
>sp|Q3UMU9|HDGR2_MOUSE Hepatoma-derived growth factor-related protein 2 OS=Mus musculus GN=Hdgfrp2 PE=1 SV=1 Back     alignment and function description
>sp|Q7Z4V5|HDGR2_HUMAN Hepatoma-derived growth factor-related protein 2 OS=Homo sapiens GN=HDGFRP2 PE=1 SV=1 Back     alignment and function description
>sp|Q6P4K1|HDGR2_XENTR Hepatoma-derived growth factor-related protein 2 OS=Xenopus tropicalis GN=hdgfrp2 PE=2 SV=1 Back     alignment and function description
>sp|Q8MJG1|PSIP1_BOVIN PC4 and SFRS1-interacting protein OS=Bos taurus GN=PSIP1 PE=2 SV=2 Back     alignment and function description
>sp|Q925G1|HDGR2_RAT Hepatoma-derived growth factor-related protein 2 OS=Rattus norvegicus GN=Hdgfrp2 PE=1 SV=2 Back     alignment and function description
>sp|Q32N87|HDGR2_XENLA Hepatoma-derived growth factor-related protein 2 OS=Xenopus laevis GN=hdgfrp2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
332029865 590 Hepatoma-derived growth factor [Acromyrm 0.993 0.738 0.347 9e-76
380012204 543 PREDICTED: uncharacterized protein LOC10 0.965 0.780 0.345 6e-74
383864833 554 PREDICTED: uncharacterized protein LOC10 0.979 0.776 0.354 3e-73
66500639 549 PREDICTED: hypothetical protein LOC55233 0.981 0.785 0.344 5e-73
328792226 546 PREDICTED: hypothetical protein LOC55233 0.977 0.785 0.347 6e-73
383864835 557 PREDICTED: uncharacterized protein LOC10 0.979 0.771 0.350 7e-73
307188093 589 Hepatoma-derived growth factor [Camponot 0.977 0.728 0.350 4e-72
350425193 553 PREDICTED: hypothetical protein LOC10074 0.981 0.779 0.336 7e-72
340709236 553 PREDICTED: hypothetical protein LOC10064 0.981 0.779 0.332 1e-71
307213442 600 Hepatoma-derived growth factor [Harpegna 0.961 0.703 0.339 1e-71
>gi|332029865|gb|EGI69734.1| Hepatoma-derived growth factor [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 176/506 (34%), Positives = 278/506 (54%), Gaps = 70/506 (13%)

Query: 1   MPAVERKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELF 60
           M  + ++F   DKVFAKVRGYPPWPA++E + D      KY ++FYGT ET +C+ DEL+
Sbjct: 1   MVKLLKRFLAGDKVFAKVRGYPPWPAKVEKVNDPNSKNAKYCVYFYGTGETAVCKVDELY 60

Query: 61  PYTEFKDKYGKGVKRKFFTEALQEIECDFGTPESR--ANLLPSESTPKPEATESQAGSDN 118
            Y E K+K+GK  +RKFF E +Q++E +     ++  A++   +S    E T S   SD 
Sbjct: 61  TYVENKEKFGKPSRRKFFHEGIQQLEQELKNDRNKPLADIDAIKSAEATEPTVSATDSDI 120

Query: 119 E-GNLVIDEGSEKKA--------APKPKTSTPRVSEA-----MDVDTP-------NYHHK 157
           E G+LVIDEG +KK+         P P   TP + +         DT        +   +
Sbjct: 121 EAGSLVIDEGEKKKSIKRKVLTSTPNPAQDTPEIKKKRGRGKASSDTSRVAEGALDSQGE 180

Query: 158 PSPVLKVTTSGRKIKPKKTFDPDDNDSTFSS--HSG-GFK---------EQSPIPGTENA 205
            SP   V+ SGRKIKPK+  D   +D T ++  H+G G K         + +P+   + A
Sbjct: 181 ESPKEVVSRSGRKIKPKRFADFSSSDETETNIEHTGRGRKTKNEDSNEHQMTPVTHKKRA 240

Query: 206 LIKASVCRIKTVDGKLVL-------------------------LDINKFTPPENCKTEKS 240
            I+         DG +V                          LDI++   P + ++EK+
Sbjct: 241 AIEKRNNESSLFDGTVVSSGTSSDTSNRVLLARTFAGEYVGIKLDIDR---PTSFESEKA 297

Query: 241 INLWKMNKINEFKQIREKVEEGEPVKEEYAKIIEEQC-QPEVQAELEANEKALKTQ---- 295
              W  +   +  +++ ++E GE + E     ++     PE +  L   + A+  +    
Sbjct: 298 RAQWDWSTATKAMKLKAQLESGEMLPERVKDSLDFNVPVPEDEKRLLTKDGAVHRKTYKL 357

Query: 296 --LKLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRL 353
             L++E  +L +D +IK ++GL+ A+ D+CL+A+D++++L I PL+LKKHP IV+T +RL
Sbjct: 358 RWLRIEAQLLQLDAQIKSNLGLDRANTDKCLQAMDEILSLSIDPLMLKKHPHIVETVKRL 417

Query: 354 QRYTGNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQLVT 413
           +RY GN+ EW ++EEE  +F QKA Q+R KA+H+YNK+K +FT+P G++FW +FS Q+V 
Sbjct: 418 RRYIGNLGEWKLSEEEGAIFKQKAEQIRQKAEHIYNKYKAMFTIPEGQSFWQSFSDQVVH 477

Query: 414 FNDVTRNMPAHDLFSLCEDPTTTAPS 439
           F  +T++MP   +FSL  DP+ +  S
Sbjct: 478 FKKLTKDMPEEKVFSLMSDPSCSDTS 503

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380012204|ref|XP_003690176.1| PREDICTED: uncharacterized protein LOC100865607 [Apis florea] Back     alignment and taxonomy information
>gi|383864833|ref|XP_003707882.1| PREDICTED: uncharacterized protein LOC100875581 isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|66500639|ref|XP_624711.1| PREDICTED: hypothetical protein LOC552332 isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|328792226|ref|XP_003251697.1| PREDICTED: hypothetical protein LOC552332 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|383864835|ref|XP_003707883.1| PREDICTED: uncharacterized protein LOC100875581 isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|307188093|gb|EFN72925.1| Hepatoma-derived growth factor [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350425193|ref|XP_003494042.1| PREDICTED: hypothetical protein LOC100741236 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340709236|ref|XP_003393217.1| PREDICTED: hypothetical protein LOC100647250 [Bombus terrestris] Back     alignment and taxonomy information
>gi|307213442|gb|EFN88864.1| Hepatoma-derived growth factor [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
MGI|MGI:1194492 669 Hdgfrp2 "hepatoma-derived grow 0.439 0.288 0.360 7.7e-28
UNIPROTKB|Q7Z4V5 671 HDGFRP2 "Hepatoma-derived grow 0.448 0.293 0.348 8.4e-27
UNIPROTKB|K7EQZ6 675 HDGFRP2 "Hepatoma-derived grow 0.448 0.291 0.348 8.7e-27
UNIPROTKB|I3L080 676 HDGFRP2 "Hepatoma-derived grow 0.448 0.291 0.348 8.7e-27
RGD|621013 669 Hdgfrp2 "hepatoma-derived grow 0.430 0.282 0.360 1.4e-26
UNIPROTKB|F1S7K5 667 LOC100526035 "Uncharacterized 0.446 0.293 0.352 2e-26
UNIPROTKB|B8Y8S3 530 PSIP1 "LEDGF/p75" [Ovis aries 0.314 0.260 0.375 3e-23
UNIPROTKB|E1BP00 530 PSIP1 "PC4 and SFRS1-interacti 0.314 0.260 0.375 4e-23
UNIPROTKB|Q8MJG1 530 PSIP1 "PC4 and SFRS1-interacti 0.314 0.260 0.375 4e-23
RGD|631439528 Psip1 "PC4 and SFRS1 interacti 0.314 0.261 0.369 5.5e-23
MGI|MGI:1194492 Hdgfrp2 "hepatoma-derived growth factor, related protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 270 (100.1 bits), Expect = 7.7e-28, Sum P(2) = 7.7e-28
 Identities = 76/211 (36%), Positives = 102/211 (48%)

Query:     8 FKTNDKVFAKVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEF 65
             FK  D VFAK++GYP WPARI+ +AD    P   KY IFF+GT ET      +LFPY + 
Sbjct:     5 FKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKC 64

Query:    66 KDKYGKGVKRKFFTEALQEIECDFGTPESRANLLPSESTPKPEATESQAGSDNEGNLVID 125
             KDKYGK  KRK F E L EI+     P +  +  P  S+   EA E+  G  ++ +   D
Sbjct:    65 KDKYGKPNKRKGFNEGLWEIQ---NNPHASYSAPPPVSSSDSEAPEADLGCGSDVDK--D 119

Query:   126 EGSEXXXXXXXXTSTP---RVSEAMDVDTPNYHH---KPSPVLKVTTSGRKIKPKKTFD- 178
             + S         T+T    R+    D D  + H    + +PVLKV+ S R  +     D 
Sbjct:   120 KESRRVMTVTAVTTTATSDRMESDSDSDKSSDHSGLKRKTPVLKVSVSKRARRASSDLDQ 179

Query:   179 ----PDDNDSTFSSHSGGFKEQSPIPGTENA 205
                 P + DS   S S    +Q   P  + A
Sbjct:   180 ASVSPSEEDSESPSESEKTSDQDFTPEKKTA 210
GO:0003674 "molecular_function" evidence=ND
GO:0003677 "DNA binding" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0005634 "nucleus" evidence=IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|Q7Z4V5 HDGFRP2 "Hepatoma-derived growth factor-related protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|K7EQZ6 HDGFRP2 "Hepatoma-derived growth factor-related protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3L080 HDGFRP2 "Hepatoma-derived growth factor-related protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|621013 Hdgfrp2 "hepatoma-derived growth factor-related protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1S7K5 LOC100526035 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B8Y8S3 PSIP1 "LEDGF/p75" [Ovis aries (taxid:9940)] Back     alignment and assigned GO terms
UNIPROTKB|E1BP00 PSIP1 "PC4 and SFRS1-interacting protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8MJG1 PSIP1 "PC4 and SFRS1-interacting protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|631439 Psip1 "PC4 and SFRS1 interacting protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
cd0583483 cd05834, HDGF_related, The PWWP domain is an essen 2e-32
pfam11467106 pfam11467, LEDGF, Lens epithelium-derived growth f 1e-16
pfam0085574 pfam00855, PWWP, PWWP domain 4e-15
cd0516287 cd05162, PWWP, The PWWP domain, named for a conser 6e-15
cd0583686 cd05836, N_Pac_NP60, The PWWP domain is an essenti 2e-09
smart0029363 smart00293, PWWP, domain with conserved PWWP motif 4e-08
cd0583587 cd05835, Dnmt3b_related, The PWWP domain is an ess 3e-07
cd0583895 cd05838, WHSC1_related, The PWWP domain was first 3e-06
cd0584093 cd05840, SPBC215_ISWI_like, The PWWP domain is a c 1e-04
cd0608080 cd06080, MUM1_like, Mutated melanoma-associated an 2e-04
>gnl|CDD|99895 cd05834, HDGF_related, The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF Back     alignment and domain information 
 Score =  117 bits (295), Expect = 2e-32
 Identities = 43/81 (53%), Positives = 56/81 (69%)

Query: 6  RKFKTNDKVFAKVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEF 65
          ++FK  D VFAKV+GYP WPAR++   D  P   KY ++F+GT ET   + ++LFPYTE 
Sbjct: 1  KQFKAGDLVFAKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHETAFLKPEDLFPYTEN 60

Query: 66 KDKYGKGVKRKFFTEALQEIE 86
          K K+GK  KRK F EA+ EIE
Sbjct: 61 KKKFGKPKKRKGFNEAVWEIE 81

This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. Length = 83
>gnl|CDD|151906 pfam11467, LEDGF, Lens epithelium-derived growth factor (LEDGF) Back     alignment and domain information
>gnl|CDD|216154 pfam00855, PWWP, PWWP domain Back     alignment and domain information
>gnl|CDD|99894 cd05162, PWWP, The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids Back     alignment and domain information
>gnl|CDD|99897 cd05836, N_Pac_NP60, The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha Back     alignment and domain information
>gnl|CDD|214603 smart00293, PWWP, domain with conserved PWWP motif Back     alignment and domain information
>gnl|CDD|99896 cd05835, Dnmt3b_related, The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis Back     alignment and domain information
>gnl|CDD|99899 cd05838, WHSC1_related, The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS) Back     alignment and domain information
>gnl|CDD|99901 cd05840, SPBC215_ISWI_like, The PWWP domain is a component of the S Back     alignment and domain information
>gnl|CDD|99903 cd06080, MUM1_like, Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 439
PF11467106 LEDGF: Lens epithelium-derived growth factor (LEDG 100.0
KOG1904|consensus496 99.95
cd0583483 HDGF_related The PWWP domain is an essential part 99.94
cd0583686 N_Pac_NP60 The PWWP domain is an essential part of 99.94
cd0584183 BS69_related The PWWP domain is part of BS69 prote 99.91
cd0583587 Dnmt3b_related The PWWP domain is an essential com 99.91
cd0516287 PWWP The PWWP domain, named for a conserved Pro-Tr 99.89
cd0583895 WHSC1_related The PWWP domain was first identified 99.88
PF0085586 PWWP: PWWP domain; InterPro: IPR000313 Upon charac 99.87
cd0584093 SPBC215_ISWI_like The PWWP domain is a component o 99.84
cd05837110 MSH6_like The PWWP domain is present in MSH6, a mi 99.8
smart0029363 PWWP domain with conserved PWWP motif. conservatio 99.79
cd0608080 MUM1_like Mutated melanoma-associated antigen 1 (M 99.78
cd05839111 BR140_related The PWWP domain is found in the BR14 99.59
cd0018376 TFIIS_I N-terminal domain (domain I) of transcript 97.16
smart0050975 TFS2N Domain in the N-terminus of transcription el 97.09
KOG1081|consensus463 96.88
PF0871153 Med26: TFIIS helical bundle-like domain; InterPro: 96.46
smart0074361 Agenet Tudor-like domain present in plant sequence 95.17
TIGR01385 299 TFSII transcription elongation factor S-II. This m 95.01
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 94.57
KOG1904|consensus496 92.58
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 91.93
PF1171755 Tudor-knot: RNA binding activity-knot of a chromod 90.01
PF15057124 DUF4537: Domain of unknown function (DUF4537) 85.69
KOG1105|consensus 296 81.92
>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis Back     alignment and domain information 
Probab=100.00  E-value=9.8e-38  Score=268.81  Aligned_cols=104  Identities=42%  Similarity=0.814  Sum_probs=73.8

Q ss_pred             hhHHHHHHHHHHHhhCCCCCCHHHHHHHHHhhcCCCCChHHhhhCchHHHHHHHhhhhccCccccccCHHHHHHhhhhHH
Q psy6849         299 EVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQKAS  378 (439)
Q Consensus       299 E~~l~~l~~~ik~sL~~~~~dv~~cl~aLdel~~L~vt~~mL~k~~e~V~tirklrry~gn~~~w~~~~~~~~~f~~~a~  378 (439)
                      |++|++||++|++||+++++||++||+|||+|.+|+||++||+|||+||+||||||||+||                  +
T Consensus         1 E~~L~~l~~~Ik~~L~~~~~Dv~kcL~~LdeL~~l~vT~~mL~kn~e~V~TlkklRrY~gn------------------~   62 (106)
T PF11467_consen    1 ERRLQELHSEIKSSLKVDNPDVKKCLKALDELKSLQVTSLMLQKNPECVETLKKLRRYKGN------------------Q   62 (106)
T ss_dssp             HHHHHHHHHHHHHTCETTEE-HHHHHHHHHHHHTS---HHHHTTTHHHHHHHHHHTT-TT-------------------H
T ss_pred             ChhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCCHHHHHhCHHHHHHHHHHHHhhcc------------------H
Confidence            7899999999999999999999999999999999999999999999999999999999996                  8


Q ss_pred             HHHHHHHHHHHHhhhhcc-cCCC-cchHHHHHHHHHHHHHHhcC
Q psy6849         379 QVRAKADHVYNKFKNLFT-VPAG-ETFWDTFSKQLVTFNDVTRN  420 (439)
Q Consensus       379 ~Ir~kA~~ly~kfK~~F~-~~eg-~~Fw~~F~~~v~~fk~~t~~  420 (439)
                      .||+||++|||+||+||+ .+|+ .+||.+||++|++|++.|+|
T Consensus        63 ~Ir~KA~~lYnkfK~~f~~~~e~~~~~~~~~~~~~~~~ke~~~~  106 (106)
T PF11467_consen   63 QIRKKATELYNKFKSLFLPEPESEQNFWEEFCEEVKKFKEETKN  106 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHH--S-SH--------------------
T ss_pred             HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999996 4443 79999999999999999986

It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alpha-helices. The residues essential for the interaction with the integrase are present in the inter-helical loop regions of the bundle structure. ; PDB: 3F9K_K 3HPG_G 3U88_C 3HPH_H 2B4J_D 1Z9E_A.
>KOG1904|consensus Back     alignment and domain information
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF Back     alignment and domain information
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha Back     alignment and domain information
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions Back     alignment and domain information
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis Back     alignment and domain information
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids Back     alignment and domain information
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS) Back     alignment and domain information
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified [] Back     alignment and domain information
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S Back     alignment and domain information
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS Back     alignment and domain information
>smart00293 PWWP domain with conserved PWWP motif Back     alignment and domain information
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA) Back     alignment and domain information
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2 Back     alignment and domain information
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme Back     alignment and domain information
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere) Back     alignment and domain information
>KOG1081|consensus Back     alignment and domain information
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>TIGR01385 TFSII transcription elongation factor S-II Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>KOG1904|consensus Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>KOG1105|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
1n27_A96 Solution Structure Of The Pwwp Domain Of Mouse Hepa 3e-17
3eae_A93 Pwwp Domain Of Human Hepatoma-Derived Growth Factor 6e-17
3qby_A94 Crystal Structure Of The Pwwp Domain Of Human Hepat 1e-16
4fu6_A153 Crystal Structure Of The Psip1 Pwwp Domain Length = 7e-16
2b8a_A110 High Resolution Structure Of The Hdgf Pwwp Domain L 7e-16
2nlu_A100 Domain-Swapped Dimer Of The Pwwp Module Of Human He 1e-15
1ri0_A110 Nmr Structure Of The N-Terminal Hath Domain Of Huma 1e-15
2m16_A97 P75/ledgf Pwwp Domain Length = 97 2e-15
3hph_E94 Closed Tetramer Of Visna Virus Integrase (Residues 2e-07
3f9k_C95 Two Domain Fragment Of Hiv-2 Integrase In Complex W 2e-07
2b4j_C98 Structural Basis For The Recognition Between Hiv-1 2e-07
3u88_C89 Crystal Structure Of Human Menin In Complex With Ml 2e-07
1z9e_A127 Solution Structure Of The Hiv-1 Integrase-Binding D 2e-06
>pdb|1N27|A Chain A, Solution Structure Of The Pwwp Domain Of Mouse Hepatoma- Derived Growth Factor, Related Protein 3 Length = 96 Back     alignment and structure 
Iteration: 1

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Query: 7  KFKTNDKVFAKVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTE 64
          ++K  D VFAK++GYP WPARI+ L +    P   KY IFF+GT ET      +LFPY E
Sbjct: 8  EYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKE 67
Query: 65 FKDKYGKGVKRKFFTEALQEIE 86
          +KDK+GK  KRK F E L EIE
Sbjct: 68 YKDKFGKSNKRKGFNEGLWEIE 89
>pdb|3EAE|A Chain A, Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2 (Hdgf2) Length = 93 Back     alignment and structure
>pdb|3QBY|A Chain A, Crystal Structure Of The Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2 Length = 94 Back     alignment and structure
>pdb|4FU6|A Chain A, Crystal Structure Of The Psip1 Pwwp Domain Length = 153 Back     alignment and structure
>pdb|2B8A|A Chain A, High Resolution Structure Of The Hdgf Pwwp Domain Length = 110 Back     alignment and structure
>pdb|2NLU|A Chain A, Domain-Swapped Dimer Of The Pwwp Module Of Human Hepatoma- Derived Growth Factor Length = 100 Back     alignment and structure
>pdb|1RI0|A Chain A, Nmr Structure Of The N-Terminal Hath Domain Of Human Hdgf Length = 110 Back     alignment and structure
>pdb|2M16|A Chain A, P75/ledgf Pwwp Domain Length = 97 Back     alignment and structure
>pdb|3HPH|E Chain E, Closed Tetramer Of Visna Virus Integrase (Residues 1-219) In Complex With Ledgf Ibd Length = 94 Back     alignment and structure
>pdb|3F9K|C Chain C, Two Domain Fragment Of Hiv-2 Integrase In Complex With Ledgf Ibd Length = 95 Back     alignment and structure
>pdb|2B4J|C Chain C, Structural Basis For The Recognition Between Hiv-1 Integrase And LedgfP75 Length = 98 Back     alignment and structure
>pdb|3U88|C Chain C, Crystal Structure Of Human Menin In Complex With Mll1 And Ledgf Length = 89 Back     alignment and structure
>pdb|1Z9E|A Chain A, Solution Structure Of The Hiv-1 Integrase-Binding Domain In LedgfP75 Length = 127 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
2b4j_C98 PC4 and SFRS1 interacting protein; HIV, integratio 1e-24
1z9e_A127 PC4 and SFRS1 interacting protein 2; heat repeat-l 2e-22
3qby_A94 Hepatoma-derived growth factor-related protein 2; 8e-22
1ri0_A110 Hepatoma-derived growth factor; HDGF, HATH domain, 3e-21
2daq_A110 WHSC1L1 protein, isoform long; PWWP domain, struct 4e-18
3llr_A154 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 2e-15
1khc_A147 DNA cytosine-5 methyltransferase 3B2; five beta-sh 2e-13
2l89_A108 PWWP domain-containing protein 1; histone binding, 2e-13
1h3z_A109 Hypothetical 62.8 kDa protein C215.07C; nuclear pr 2e-12
2gfu_A134 DNA mismatch repair protein MSH6; PWWP domain, tud 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E Length = 98 Back     alignment and structure
 Score = 96.6 bits (240), Expect = 1e-24
 Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 18/113 (15%)

Query: 298 LEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYT 357
           ++  +  I   IK+S+ +++ D + C++ALD+L +L +T    +KH E++ T ++++R+ 
Sbjct: 4   MDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFK 63

Query: 358 GNIAEWTMTEEEAEVFTQKASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQ 410
            +                    +  K+  +YNKFKN+F V  G++       +
Sbjct: 64  VS------------------QVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNK 98
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1 Length = 127 Back     alignment and structure
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A Length = 94 Back     alignment and structure
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A Length = 110 Back     alignment and structure
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2 Length = 110 Back     alignment and structure
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} Length = 154 Back     alignment and structure
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A* Length = 147 Back     alignment and structure
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe} Length = 108 Back     alignment and structure
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
1z9e_A127 PC4 and SFRS1 interacting protein 2; heat repeat-l 100.0
2b4j_C98 PC4 and SFRS1 interacting protein; HIV, integratio 100.0
3qby_A94 Hepatoma-derived growth factor-related protein 2; 99.95
1ri0_A110 Hepatoma-derived growth factor; HDGF, HATH domain, 99.93
4fu6_A153 PC4 and SFRS1-interacting protein; structural geno 99.92
2daq_A110 WHSC1L1 protein, isoform long; PWWP domain, struct 99.89
3llr_A154 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 99.87
1khc_A147 DNA cytosine-5 methyltransferase 3B2; five beta-sh 99.86
2l89_A108 PWWP domain-containing protein 1; histone binding, 99.85
2gfu_A134 DNA mismatch repair protein MSH6; PWWP domain, tud 99.85
1h3z_A109 Hypothetical 62.8 kDa protein C215.07C; nuclear pr 99.82
3pfs_A158 Bromodomain and PHD finger-containing protein 3; s 99.66
3l42_A130 Peregrin; transcription regulation, histone H3 ace 99.65
1wjt_A103 Transcription elongation factor S-II protein 3; fo 97.7
3pmi_A134 PWWP domain-containing protein MUM1; structural ge 96.88
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 96.85
3qii_A85 PHD finger protein 20; tudor domain, structural ge 96.58
1pqv_S 309 STP-alpha, transcription elongation factor S-II, D 96.19
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 94.7
3s6w_A54 Tudor domain-containing protein 3; methylated argi 93.79
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 93.51
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 93.36
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 92.28
2d9t_A78 Tudor domain-containing protein 3; structural geno 91.92
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 91.57
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 91.55
2l8d_A66 Lamin-B receptor; DNA binding protein; NMR {Gallus 87.48
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 85.08
2diq_A110 Tudor and KH domain-containing protein; tudor doma 84.65
2lrq_A85 Protein MRG15, NUA4 complex subunit EAF3 homolog; 84.38
2f5k_A102 MORF-related gene 15 isoform 1; beta barrel, gene 82.99
2k3y_A136 Chromatin modification-related protein EAF3; dimet 82.25
2eqm_A88 PHD finger protein 20-like 1; structural genomics, 82.09
4hcz_A58 PHD finger protein 1; protein-peptide complex, tud 82.03
2dig_A68 Lamin-B receptor; tudor domain, integral nuclear e 80.16
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1 Back     alignment and structure
Probab=100.00  E-value=6.1e-37  Score=268.79  Aligned_cols=100  Identities=27%  Similarity=0.530  Sum_probs=81.8

Q ss_pred             hhhhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHhhcCCCCChHHhhhCchHHHHHHHhhhhccCccccccCHHHHHHhhh
Q psy6849         296 LKLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQ  375 (439)
Q Consensus       296 L~~E~~l~~l~~~ik~sL~~~~~dv~~cl~aLdel~~L~vt~~mL~k~~e~V~tirklrry~gn~~~w~~~~~~~~~f~~  375 (439)
                      .++|++|++||++|++||+++++||.+||++||+|.+|+||++||+|||+||+||||||||+||                
T Consensus         2 ~s~E~~L~~L~~~Ik~~L~v~~~Dv~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gn----------------   65 (127)
T 1z9e_A            2 SSMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVS----------------   65 (127)
T ss_dssp             -CHHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTC----------------
T ss_pred             ccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhcc----------------
Confidence            4689999999999999999999999999999999999999999999999999999999999997                


Q ss_pred             hHHHHHHHHHHHHHHhhhhcccCCCcchHHHHHHHHHH
Q psy6849         376 KASQVRAKADHVYNKFKNLFTVPAGETFWDTFSKQLVT  413 (439)
Q Consensus       376 ~a~~Ir~kA~~ly~kfK~~F~~~eg~~Fw~~F~~~v~~  413 (439)
                        +.||++|++|||+||+||++++|++||++||..+-.
T Consensus        66 --q~Ir~kA~~iY~kFK~lf~~geg~~fw~~~~~~~~~  101 (127)
T 1z9e_A           66 --QVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNKSLA  101 (127)
T ss_dssp             --SSHHHHHHHHHHHHHHHHHC----------------
T ss_pred             --HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence              789999999999999999999999999999998643
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E Back     alignment and structure
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A Back     alignment and structure
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A Back     alignment and structure
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A Back     alignment and structure
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2 Back     alignment and structure
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0 Back     alignment and structure
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A* Back     alignment and structure
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A* Back     alignment and structure
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A* Back     alignment and structure
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1 Back     alignment and structure
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens} Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster} Back     alignment and structure
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A Back     alignment and structure
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A Back     alignment and structure
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} Back     alignment and structure
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 439
d2b4jc181 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting pro 1e-21
d2nlua1100 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, 6e-21
d1khca_137 b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse 1e-15
d2daqa197 b.34.9.2 (A:8-104) Histone-lysine N-methyltransfer 7e-15
d1h3za_108 b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fi 4e-11
>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein, PSIP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure

class: All alpha proteins
fold: N-cbl like
superfamily: HIV integrase-binding domain
family: HIV integrase-binding domain
domain: PC4 and SFRS1-interacting protein, PSIP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.7 bits (215), Expect = 1e-21
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 18/93 (19%)

Query: 302 ILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIA 361
           +  I   IK+S+ +++ D + C++ALD+L +L +T    +KH E++ T ++++R+  +  
Sbjct: 7   LQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVS-- 64

Query: 362 EWTMTEEEAEVFTQKASQVRAKADHVYNKFKNL 394
                             +  K+  +YNKFKN+
Sbjct: 65  ----------------QVIMEKSTMLYNKFKNM 81
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} Length = 100 Back     information, alignment and structure
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 108 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
d2b4jc181 PC4 and SFRS1-interacting protein, PSIP1 {Human (H 99.97
d2nlua1100 Hepatoma-derived growth factor, HDGF {Human (Homo 99.93
d2daqa197 Histone-lysine N-methyltransferase NSD3 {Human (Ho 99.89
d1khca_137 DNA methyltransferase DNMT3B {Mouse (Mus musculus) 99.85
d1h3za_108 Hypothetical protein SPBC215.07c {Fission yeast (S 99.84
d1wjta_103 Transcription elongation factor S-II protein 3 {Mo 97.01
d1eo0a_77 Transcription elongation factor TFIIS N-domain {Ba 94.78
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 93.22
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 90.09
d2f5ka183 Mortality factor 4-like protein 1, MRG15 {Human (H 85.81
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 84.88
>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein, PSIP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: N-cbl like
superfamily: HIV integrase-binding domain
family: HIV integrase-binding domain
domain: PC4 and SFRS1-interacting protein, PSIP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-31  Score=215.29  Aligned_cols=80  Identities=30%  Similarity=0.600  Sum_probs=77.9

Q ss_pred             hhhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHhhcCCCCChHHhhhCchHHHHHHHhhhhccCccccccCHHHHHHhhhh
Q psy6849         297 KLEVCILDIDLRIKDSIGLEHADCDECLKALDDLINLPITPLVLKKHPEIVDTCRRLQRYTGNIAEWTMTEEEAEVFTQK  376 (439)
Q Consensus       297 ~~E~~l~~l~~~ik~sL~~~~~dv~~cl~aLdel~~L~vt~~mL~k~~e~V~tirklrry~gn~~~w~~~~~~~~~f~~~  376 (439)
                      .+|++|++||++||+||+++++||++||++||+|.+|+||++||+||||||+|||+||||+||                 
T Consensus         2 ~~E~~l~~L~~~ik~sL~~~~~dv~kcL~~L~~l~~l~vt~~mL~kn~e~V~tikklRry~gn-----------------   64 (81)
T d2b4jc1           2 SMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVS-----------------   64 (81)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTSCCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTC-----------------
T ss_pred             cHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHcCCCCHHHHHHChHHHHHHHHHHHHhcc-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999997                 


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q psy6849         377 ASQVRAKADHVYNKFKNL  394 (439)
Q Consensus       377 a~~Ir~kA~~ly~kfK~~  394 (439)
                       +.||++|++|||+||+|
T Consensus        65 -~~Ir~kA~~ly~kfKsl   81 (81)
T d2b4jc1          65 -QVIMEKSTMLYNKFKNM   81 (81)
T ss_dssp             -HHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHhccC
Confidence             67999999999999986
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure