Psyllid ID: psy6859

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR
Secondary Structure (PSIPRED)
cccccEEEEEEccccEEEEEEccccEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEccccEEEEEEEEccccccEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEEEEEEEcccccEEEcccccccEEEEEcccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEEEcccHHHHEEcccccccEEEEEcccccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccccccEEEEccccccEEEEEcccccccEEEEEHHcccccEEEEEEcccccEEEEEccccEEEEEccccccccccccEEEEEEccccHHHHHcccccEEEEEEcccccEEEEEcccc
Coil and Loop (DISEMBL)
mhrspithvvVTKTDFVitasndghIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMInmikldftplTVECIHYLgdaiptaavsdqdssrvhiydckgndminmikldftplTVECIHYLgdaiptaavsdqdsshvhiydckgngtplhvldrlhtkpvvlikfnpIYQVVVSVDKAGILEYWSgykqefkfpkcvhfesKLDTDLfefaknktypsglsfspdgnkfVTISMDR
Flexible Loop (DISEMBL)
mhrspithvvvtktdfvitasNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPtaavsdqdssRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNktypsglsfspdgnkfvtismdr
Low Complexity Region (SEG)
MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR
Disordered region (IsUnstruct)
*****ITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTY********************
Disordered Region (DISOPRED)
MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR
Disordered Region (DISEMBL)
MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR
Disordered Region (DISPRO)
**RSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q96BP3	646	Peptidylprolyl isomerase	yes	N/A	0.823	0.332	0.498	2e-69
Q29RZ2	644	Peptidylprolyl isomerase	yes	N/A	0.823	0.333	0.498	3e-69
Q8CEC6	646	Peptidylprolyl isomerase	yes	N/A	0.823	0.332	0.494	6e-69
Q5NVL7	646	Peptidylprolyl isomerase	yes	N/A	0.823	0.332	0.494	8e-69
P0C1J0	630	Peptidyl-prolyl cis-trans	N/A	N/A	0.808	0.334	0.418	1e-48
O74942	610	Peptidyl-prolyl cis-trans	yes	N/A	0.804	0.344	0.277	2e-21
Q54KL5	335	WD repeat-containing prot	no	N/A	0.674	0.525	0.241	2e-05
Q9VU65	391	POC1 centriolar protein h	no	N/A	0.628	0.419	0.221	7e-05
P74442	1191	Uncharacterized WD repeat	N/A	N/A	0.272	0.059	0.293	0.0001
Q7T394	410	Lissencephaly-1 homolog A	no	N/A	0.310	0.197	0.285	0.0004

>sp|Q96BP3|PPWD1_HUMAN Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1

 Score =  262 bits (669), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/261 (49%), Positives = 164/261 (62%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITHVV TKTDF+ITAS+DGH+KFWKK EEGIEFVKHFRSHLGVI SI  +  G L
Sbjct: 88  MHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGAL 147

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
            C+V  DKAMKVFDV+NFDMINM+KL + P   E I+  GDAI + A S++ + ++ IYD
Sbjct: 148 FCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYD 207

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
            +G++                                               PLH+ D+L
Sbjct: 208 GRGDNQ----------------------------------------------PLHIFDKL 221

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           HT P+  I+ NP+Y+ VVS DK+G++EYW+G   E+KFPK V++E K DTDL+EFAK K 
Sbjct: 222 HTSPLTQIRLNPVYKAVVSSDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKA 281

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
           YP+ + FSPDG K  TI  DR
Sbjct: 282 YPTSVCFSPDGKKIATIGSDR 302

Putative peptidylprolyl isomerase (PPIase). PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.
Homo sapiens (taxid: 9606)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q29RZ2|PPWD1_BOVIN Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1

 Score =  261 bits (668), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/261 (49%), Positives = 164/261 (62%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITHVV TKTDF+ITAS+DGH+KFWKK EEGIEFVKHFRSHLGVI SI  +  G L
Sbjct: 86  MHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGAL 145

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
            C+V  DKAMKVFDV+NFDMINM+KL + P   E I+  GDAI + A S++ + ++ IYD
Sbjct: 146 FCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYD 205

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
            +G++                                               PLH+ D+L
Sbjct: 206 GRGDNQ----------------------------------------------PLHIFDKL 219

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           HT P+  I+ NP+Y+ VVS DK+G++EYW+G   E+KFPK V++E K DTDL+EFAK K 
Sbjct: 220 HTSPLTQIRLNPVYKAVVSSDKSGMIEYWTGPPYEYKFPKNVNWEYKTDTDLYEFAKCKA 279

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
           YP+ + FSPDG K  TI  DR
Sbjct: 280 YPTSICFSPDGKKLATIGSDR 300

Putative peptidylprolyl isomerase (PPIase). PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8CEC6|PPWD1_MOUSE Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=2

 Score =  260 bits (665), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 129/261 (49%), Positives = 163/261 (62%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITHVV TKTDF+ITAS+DGH+KFWKK EEGIEFVKHFRSHLGVI SI  +  G L
Sbjct: 88  MHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGAL 147

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
            C+V  DKAMKVFDV+NFDMINM+KL + P   E I+  GDAI + A S++ + ++ IYD
Sbjct: 148 FCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYD 207

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
            +G++                                               PLH+ D+L
Sbjct: 208 GRGDNQ----------------------------------------------PLHIFDKL 221

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           H  P+  I+ NP+Y+ VVS DK+G++EYW+G   E+KFPK V++E K DTDL+EFAK K 
Sbjct: 222 HVSPLTQIRLNPVYKAVVSSDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKA 281

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
           YP+ + FSPDG K  TI  DR
Sbjct: 282 YPTSICFSPDGKKIATIGSDR 302

Putative peptidylprolyl isomerase (PPIase). PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5NVL7|PPWD1_PONAB Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1

 Score =  260 bits (664), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 129/261 (49%), Positives = 163/261 (62%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITHVV TKTDF+ITAS+DGH+KFWKK EEGIEFVKHFRSHLGVI  I  +  G L
Sbjct: 88  MHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIECIAVSSEGAL 147

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
            C+V  DKAMKVFDV+NFDMINM+KL + P   E I+  GDAI + A S++ + ++ IYD
Sbjct: 148 FCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYD 207

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
            +G++                                               PLH+ D+L
Sbjct: 208 GRGDNQ----------------------------------------------PLHIFDKL 221

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           HT P+  I+ NP+Y+ VVS DK+G++EYW+G   E+KFPK V++E K DTDL+EFAK K 
Sbjct: 222 HTSPLTQIRLNPVYKAVVSSDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKA 281

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
           YP+ + FSPDG K  TI  DR
Sbjct: 282 YPTSICFSPDGKKIATIGSDR 302

Putative peptidylprolyl isomerase (PPIase). PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1J0|CYP15_RHIO9 Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp15 PE=3 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 108/258 (41%), Positives = 140/258 (54%), Gaps = 47/258 (18%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ++ V VTK DF+IT S DGH+KFWKK   GIEFVKH++SHL  I  I  + N  L
Sbjct: 70  MHRDVLSQVAVTKKDFIITTSVDGHLKFWKKTASGIEFVKHYKSHLSSIVDISISANHEL 129

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
           L T++ D  +KV                                              YD
Sbjct: 130 LATISDDTTLKV----------------------------------------------YD 143

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
               DMINMIKL + P +V  IH  G A    AVS+ D+S++HIYD   +G PLH L ++
Sbjct: 144 ITNFDMINMIKLRYKPKSVCWIHQSGQAQALVAVSEADNSNIHIYDGHADGKPLHTLSKM 203

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           H+KPV +I+FN  +  VVSVD  G++EYWS  +  F  P  + FE K  TDL+EF K K+
Sbjct: 204 HSKPVHIIEFNSRFNCVVSVDAIGMIEYWSP-EAPFALPDNLDFELKSQTDLYEFRKKKS 262

Query: 241 YPSGLSFSPDGNKFVTIS 258
            P+ L+FSPDG  F T+S
Sbjct: 263 VPTCLTFSPDGLSFATMS 280

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|O74942|CYP9_SCHPO Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cyp9 PE=1 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 117/259 (45%), Gaps = 49/259 (18%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MH + I     TK++++++ S DG++KFW K   G+E++K F +H  ++ S   + +  L
Sbjct: 45  MHNAEIYKCFPTKSNYILSVSYDGYVKFWHKTPNGVEYIKEFHAHNAMLLSAELSQDERL 104

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
             T A DK++KVFDV + D++N+I L+F P  + C +         AVS  +S  +  ++
Sbjct: 105 FITGADDKSLKVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSSAESPLIFFFE 164

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
             G+  +                                    +Y  K +  P+H L  L
Sbjct: 165 SGGDGEV------------------------------------LYTVKKHTAPVHCLRYL 188

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVH-FESKLDTDLFEFAKNK 239
            T    L           S+D  G++EYWS  ++ F+ P     F  K  TDL+ F K K
Sbjct: 189 STLDCFL-----------SIDIGGMVEYWSP-EEPFQKPDTAELFNMKSQTDLYIFKKQK 236

Query: 240 TYPSGLSFSPDGNKFVTIS 258
           + P+ L  S   N + TIS
Sbjct: 237 SVPTSLEVSHFENFWSTIS 255

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 16  FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
           ++ +AS D  IK W   +   +F +    H   I  I  + +  L+C+ + DK +K++DV
Sbjct: 60  WLASASADKTIKIWGAYDG--KFERTLEGHKEGISDIAWSQDSKLICSASDDKTIKIWDV 117

Query: 76  INFDMINMIK--------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI 127
            +  M+  +K        + F P +               VS      V I+D    +  
Sbjct: 118 ESGKMVKTLKGHKEYVFGVSFNPQS------------NLIVSGSFDENVRIWDVNTGECT 165

Query: 128 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVL 187
            MI     P+T   +H+  D   T  VS      V I+D    G  L+ +     K V  
Sbjct: 166 KMISAHSDPVT--GVHFNRDG--TLVVSGSYDGTVRIWDTT-TGQLLNTISTEDGKEVSF 220

Query: 188 IKFNPIYQVVVSVDKAGILEYWS 210
           +KF+P  + V++      L  WS
Sbjct: 221 VKFSPNGKFVLAGTLDNTLRLWS 243

Dictyostelium discoideum (taxid: 44689)

>sp|Q9VU65|POC1_DROME POC1 centriolar protein homolog OS=Drosophila melanogaster GN=Poc1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 12/176 (6%)

Query: 16  FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV 75
            ++TAS+D   K W+      +FV  F      + S   + NG L+ T + DK+++++DV
Sbjct: 116 LMLTASDDKSAKIWRVARR--QFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDV 173

Query: 76  INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT 135
            + + +     +         H  G+ +  A       +R+ I+D  G+ ++ +  +   
Sbjct: 174 DSGECVRTFTEERAAPRQLAWHPWGNMLAVAL----GCNRIKIFDVSGSQLLQLYVVHSA 229

Query: 136 PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN 191
           P+     H  G  +    +S  D   + I D    G P++ L   HT  V  + F+
Sbjct: 230 PVNDVAFHPSGHFL----LSGSDDRTIRILDLL-EGRPIYTLTG-HTDAVNAVAFS 279

Plays an important role in centriole formation.

Drosophila melanogaster (taxid: 7227)

>sp|P74442|Y143_SYNY3 Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0143 PE=4 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 2   HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           HR  +T V ++   + + +AS DG +  W  Q E   F++ F  H G I+ +  + NG +
Sbjct: 559 HRDGVTSVAISSHKNLIASASRDGTVHLWTPQGE---FLREFTGHTGSIYRVDFSPNGKI 615

Query: 61  LCTVASDKAMKVFDV 75
             T   D+ +K++D+
Sbjct: 616 FATAGQDQTVKIWDL 630

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q7T394|LIS1A_DANRE Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 2   HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           HRSP+T V+       +++AS D  IK W    E  +F +  + H   +  I  ++ G L
Sbjct: 107 HRSPVTRVIFHPVFSVIVSASEDATIKVW--DHETGDFERTLKGHTDSVQDISFDHTGKL 164

Query: 61  LCTVASDKAMKVFDVINFDMINMI 84
           L + ++D  +K++D   F+ I  +
Sbjct: 165 LASCSADMTIKLWDFQGFECIRTM 188

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
307207900	612	Peptidylprolyl isomerase domain and WD r	0.823	0.351	0.547	8e-76
322801455	611	hypothetical protein SINV_07490 [Solenop	0.823	0.351	0.536	8e-75
307185712	611	Peptidylprolyl isomerase domain and WD r	0.823	0.351	0.532	9e-75
332027904	610	Peptidylprolyl isomerase domain and WD r	0.823	0.352	0.536	1e-74
383850977	611	PREDICTED: peptidylprolyl isomerase doma	0.823	0.351	0.547	2e-74
66518074	612	PREDICTED: peptidylprolyl isomerase doma	0.823	0.351	0.536	5e-72
270009039	365	hypothetical protein TcasGA2_TC015672 [T	0.823	0.589	0.528	9e-71
189238464	600	PREDICTED: similar to cyclophilin [Tribo	0.823	0.358	0.528	1e-70
157112676	619	cyclophilin [Aedes aegypti] gi|108877984	0.823	0.347	0.538	2e-70
156537319	612	PREDICTED: peptidylprolyl isomerase doma	0.823	0.351	0.517	2e-70

>gi|307207900|gb|EFN85461.1| Peptidylprolyl isomerase domain and WD repeat-containing protein 1 [Harpegnathos saltator]

 Score =  289 bits (740), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 143/261 (54%), Positives = 174/261 (66%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITH++VTK+ FVITAS DGH+KFWKKQEE IEFVKHFR+HL  I SI  + NG  
Sbjct: 55  MHRDVITHILVTKSGFVITASCDGHVKFWKKQEELIEFVKHFRAHLMTIQSISASCNGVH 114

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
           +C+V+ DK MK+FDVINF                                          
Sbjct: 115 MCSVSIDKTMKIFDVINF------------------------------------------ 132

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
               DMINMIKLDF PL  E I+  GDAI   AVS Q+S+ +HIYD +G   PLHV+++L
Sbjct: 133 ----DMINMIKLDFVPLCAEWIYSAGDAIAAVAVSSQESNKIHIYDGQGTNIPLHVIEKL 188

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           HTKPV+++K+NP Y+  +SVDKAGILEYW+G K E+KFPKC+ FESKLDTDLFEFAKNKT
Sbjct: 189 HTKPVIIMKYNPTYETCISVDKAGILEYWTGPKTEYKFPKCISFESKLDTDLFEFAKNKT 248

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
           YP GL+ SPDG +F ++S DR
Sbjct: 249 YPCGLAVSPDGKRFASLSGDR 269

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801455|gb|EFZ22116.1| hypothetical protein SINV_07490 [Solenopsis invicta]

 Score =  286 bits (731), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 140/261 (53%), Positives = 175/261 (67%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITH++VTK++FVITAS DGH+KFWKKQEE IEFVKHFR+HL  I S+  + NG  
Sbjct: 54  MHRDIITHILVTKSNFVITASCDGHVKFWKKQEELIEFVKHFRAHLMAIQSMSASCNGVH 113

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
           +C+V+ DK MK+FDVINF                                          
Sbjct: 114 VCSVSIDKTMKIFDVINF------------------------------------------ 131

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
               DMINMIKLDF PL  E ++  GDAI   AVS Q+S+ +++YD +G  TPLHV ++L
Sbjct: 132 ----DMINMIKLDFVPLCAEWVYSAGDAISAVAVSSQESNKIYVYDGQGTSTPLHVFEKL 187

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           HTKPVV++K+N +Y+  +SVDKAGILEYW+G K E+KFPKC+ FESKLDTDLFEFAKNKT
Sbjct: 188 HTKPVVIMKYNSVYETCISVDKAGILEYWTGPKMEYKFPKCISFESKLDTDLFEFAKNKT 247

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
           YP GL+ SPDG +F ++S DR
Sbjct: 248 YPCGLAISPDGKRFASLSGDR 268

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307185712|gb|EFN71628.1| Peptidylprolyl isomerase domain and WD repeat-containing protein 1 [Camponotus floridanus]

 Score =  286 bits (731), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 139/261 (53%), Positives = 176/261 (67%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITH++VTK++FVITAS DGH+KFWKKQEE IEFVKHFR+HL  I S+  + NG  
Sbjct: 54  MHRDVITHILVTKSNFVITASCDGHVKFWKKQEELIEFVKHFRAHLMAIQSMSVSCNGVH 113

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
           +C+V+ DK MK+FDVINF                                          
Sbjct: 114 MCSVSIDKTMKIFDVINF------------------------------------------ 131

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
               DMINMI+LDF PL  E ++  GDAI   AVS Q+S+ + IYD +G  TPLHVL++L
Sbjct: 132 ----DMINMIRLDFVPLCAEWVYSAGDAISAIAVSSQESNKIFIYDGQGTNTPLHVLEKL 187

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           HTKPVV++K+NP+Y+  +S+DKAGILEYW+G K +++FPKC+ FESKLDTDLFEFAKNKT
Sbjct: 188 HTKPVVIMKYNPVYETCISIDKAGILEYWTGPKMKYRFPKCISFESKLDTDLFEFAKNKT 247

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
           YP GL+ SPDG +F ++S DR
Sbjct: 248 YPCGLAISPDGKRFASLSGDR 268

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027904|gb|EGI67959.1| Peptidylprolyl isomerase domain and WD repeat-containing protein 1 [Acromyrmex echinatior]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 140/261 (53%), Positives = 175/261 (67%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITH++VTK++FVITAS DGH+KFWKKQEE IEFVKHFR+HL  I SI  + NG  
Sbjct: 53  MHRDVITHILVTKSNFVITASCDGHVKFWKKQEELIEFVKHFRAHLMAIQSISASCNGVH 112

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
           +C+V+ DK MK+FDVINF                                          
Sbjct: 113 VCSVSIDKTMKIFDVINF------------------------------------------ 130

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
               DMINMIKLDF PL  E ++  GDAI   AVS Q+S+ ++IYD +G+   LHV ++L
Sbjct: 131 ----DMINMIKLDFVPLCTEWVYSAGDAIAAVAVSSQESNKIYIYDGQGSSMSLHVFEKL 186

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           HTKPVV++K+NP+Y+  +SVD+AGILEYW+G K E+KFPKC+ FESKLDTDLFEFAKNKT
Sbjct: 187 HTKPVVIMKYNPVYETCISVDRAGILEYWTGPKMEYKFPKCISFESKLDTDLFEFAKNKT 246

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
           YP GL+ SPDG +F ++S DR
Sbjct: 247 YPCGLAISPDGKRFASLSGDR 267

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850977|ref|XP_003701040.1| PREDICTED: peptidylprolyl isomerase domain and WD repeat-containing protein 1 [Megachile rotundata]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 143/261 (54%), Positives = 173/261 (66%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITH+VVTK++FV+T S DGH+KFWKKQEE IEFVKHFR+HL  I S+  + NG  
Sbjct: 54  MHRDVITHIVVTKSNFVLTGSCDGHVKFWKKQEELIEFVKHFRAHLMTIQSMAASCNGVH 113

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
            CTV+ DK MK+FDVINF                                          
Sbjct: 114 ACTVSLDKTMKIFDVINF------------------------------------------ 131

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
               DMINMIKL+F PL  E I+  GDAIP  AVS Q+S+ + IYD +G  TPLHV ++L
Sbjct: 132 ----DMINMIKLNFVPLCCEWIYSPGDAIPAVAVSAQESNKIFIYDGQGTSTPLHVFEKL 187

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           HTKPVV +K+NP+Y+  +SVDKAGILEYW+G K E+KFPKCV F+SKLDTDLFEFAKNKT
Sbjct: 188 HTKPVVAMKYNPVYETCISVDKAGILEYWTGPKMEYKFPKCVTFDSKLDTDLFEFAKNKT 247

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
           YP GL+ SP+G KF ++S DR
Sbjct: 248 YPCGLAVSPNGKKFASLSGDR 268

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66518074|ref|XP_396986.2| PREDICTED: peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform 1 [Apis mellifera]

 Score =  276 bits (707), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 140/261 (53%), Positives = 170/261 (65%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITH+VVTK++F+IT S DGH+KFWKKQEE IEFVKHFR+HL  I S+  + NG  
Sbjct: 55  MHRDVITHIVVTKSNFIITGSCDGHVKFWKKQEELIEFVKHFRAHLMTIQSMAASCNGVH 114

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
            CTV+ DK +K+FDVINF                                          
Sbjct: 115 ACTVSLDKTIKIFDVINF------------------------------------------ 132

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
               DMINM+KLD+ PL  E I+  GDAI   AVS Q+S+ + IYD +G   PLHV ++L
Sbjct: 133 ----DMINMMKLDYIPLCCEWIYSPGDAISAIAVSAQESNKIFIYDGQGTNIPLHVFEKL 188

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           HTKPVV +K+N IY+  +SVDKAGILEYW+G K E+KFPKCV FESKLDTDLFEFAKNKT
Sbjct: 189 HTKPVVAMKYNSIYETCISVDKAGILEYWTGPKMEYKFPKCVTFESKLDTDLFEFAKNKT 248

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
           YP GL+ SPDG +F ++S DR
Sbjct: 249 YPCGLAISPDGKRFASLSGDR 269

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009039|gb|EFA05487.1| hypothetical protein TcasGA2_TC015672 [Tribolium castaneum]

 Score =  272 bits (696), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 138/261 (52%), Positives = 170/261 (65%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITHVVV+ TDF+ITAS DGHIKFWKK E GIEFVKHFRSHLG I SI  N  GTL
Sbjct: 43  MHRDTITHVVVSATDFLITASCDGHIKFWKKVETGIEFVKHFRSHLGPITSIACNVEGTL 102

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
            C+ +SDK++K+FDV+NF                                          
Sbjct: 103 FCSASSDKSLKIFDVVNF------------------------------------------ 120

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
               DMINM+KLDF P  VE +H  GD + + AV+D DS  +H++D + +  PL VL+++
Sbjct: 121 ----DMINMMKLDFAPNQVEWVHGPGDPVHSLAVTDSDSPKIHVFDGRSDNKPLKVLEKI 176

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           HT+PVVL+K+NP Y V VSVDK GILEYWSG KQ+  FPK V F+SKLDTDLFEFAK+KT
Sbjct: 177 HTQPVVLVKYNPKYDVAVSVDKTGILEYWSGLKQDCTFPKNVKFDSKLDTDLFEFAKHKT 236

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
             +GL+F+PDG +F T+S DR
Sbjct: 237 TVTGLAFAPDGARFATLSTDR 257

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238464|ref|XP_966906.2| PREDICTED: similar to cyclophilin [Tribolium castaneum]

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 138/261 (52%), Positives = 170/261 (65%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITHVVV+ TDF+ITAS DGHIKFWKK E GIEFVKHFRSHLG I SI  N  GTL
Sbjct: 43  MHRDTITHVVVSATDFLITASCDGHIKFWKKVETGIEFVKHFRSHLGPITSIACNVEGTL 102

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
            C+ +SDK++K+FDV+NF                                          
Sbjct: 103 FCSASSDKSLKIFDVVNF------------------------------------------ 120

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
               DMINM+KLDF P  VE +H  GD + + AV+D DS  +H++D + +  PL VL+++
Sbjct: 121 ----DMINMMKLDFAPNQVEWVHGPGDPVHSLAVTDSDSPKIHVFDGRSDNKPLKVLEKI 176

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           HT+PVVL+K+NP Y V VSVDK GILEYWSG KQ+  FPK V F+SKLDTDLFEFAK+KT
Sbjct: 177 HTQPVVLVKYNPKYDVAVSVDKTGILEYWSGLKQDCTFPKNVKFDSKLDTDLFEFAKHKT 236

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
             +GL+F+PDG +F T+S DR
Sbjct: 237 TVTGLAFAPDGARFATLSTDR 257

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112676|ref|XP_001651843.1| cyclophilin [Aedes aegypti] gi|108877984|gb|EAT42209.1| AAEL006244-PA [Aedes aegypti]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/262 (53%), Positives = 170/262 (64%), Gaps = 47/262 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITHVVVTKTDF++T S DGH+KFWKK E GIEFVKHFRSHL  I+++  N  GT 
Sbjct: 62  MHRDTITHVVVTKTDFIVTVSLDGHVKFWKKMEHGIEFVKHFRSHLAPINALAANNAGTY 121

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
           LCT + DK +KVF     D+IN                                      
Sbjct: 122 LCTASVDKNVKVF-----DVINF------------------------------------- 139

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
               DMINMIKLD+ P   E IH  GDAI   AV+DQDS+ ++IYD KG   PLHVLD+L
Sbjct: 140 ----DMINMIKLDYVPYRAEWIHNTGDAISYLAVADQDSNRINIYDGKGTNEPLHVLDKL 195

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP-KCVHFESKLDTDLFEFAKNK 239
           HTKPVVLIK+NP+Y++ +S+DKAGILEYW G + +FKFP K V+FESKLDT L+EFAKNK
Sbjct: 196 HTKPVVLIKYNPVYEMTISIDKAGILEYWLGARNDFKFPSKLVNFESKLDTSLYEFAKNK 255

Query: 240 TYPSGLSFSPDGNKFVTISMDR 261
           T  + L+F+ DG KF T+S DR
Sbjct: 256 TVVTSLAFTQDGKKFATVSTDR 277

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537319|ref|XP_001606241.1| PREDICTED: peptidylprolyl isomerase domain and WD repeat-containing protein 1-like [Nasonia vitripennis]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 135/261 (51%), Positives = 170/261 (65%), Gaps = 46/261 (17%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           MHR  ITH+VVTKT+F+ITAS DGH+KFWKKQEE IEFVKHFR+HL  I ++  + NG  
Sbjct: 56  MHRDVITHIVVTKTNFIITASCDGHVKFWKKQEELIEFVKHFRAHLQPIQALAASCNGVH 115

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
            CT++ DK++KVFDV+NF                                          
Sbjct: 116 CCTISVDKSIKVFDVVNF------------------------------------------ 133

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
               DMINM+K+D+ P   E ++  GDAI   AVSDQDS+ ++IYD +G  TPLH+ + L
Sbjct: 134 ----DMINMMKVDYVPQCAEWVYSAGDAIAAVAVSDQDSNKIYIYDGQGTETPLHIFETL 189

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           HTKPVV +K+NP+Y   +SVDK GILEYW+G + E+KFPK V FESKLDTDL+EFAKNKT
Sbjct: 190 HTKPVVALKYNPVYDTCISVDKLGILEYWTGPRNEYKFPKNVLFESKLDTDLYEFAKNKT 249

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
           YP GL+ S DG KF ++S DR
Sbjct: 250 YPCGLAISNDGKKFASLSGDR 270

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
UNIPROTKB|D6R9Q1	241	PPWD1 "Peptidylprolyl isomeras	0.528	0.572	0.607	9.6e-41
UNIPROTKB|F5H7P7	616	PPWD1 "Peptidylprolyl isomeras	0.528	0.224	0.607	9.6e-41
MGI|MGI:2443069	646	Ppwd1 "peptidylprolyl isomeras	0.528	0.213	0.607	1.3e-40
UNIPROTKB|Q29RZ2	644	PPWD1 "Peptidylprolyl isomeras	0.528	0.214	0.607	1.6e-40
UNIPROTKB|Q96BP3	646	PPWD1 "Peptidylprolyl isomeras	0.528	0.213	0.607	1.7e-40
RGD|1310204	646	Ppwd1 "peptidylprolyl isomeras	0.528	0.213	0.6	1.7e-40
UNIPROTKB|E2RIS6	646	PPWD1 "Uncharacterized protein	0.528	0.213	0.607	1.7e-40
UNIPROTKB|F1SKT8	646	PPWD1 "Peptidylprolyl isomeras	0.528	0.213	0.6	2.2e-40
FB|FBgn0035027	637	CG3511 [Drosophila melanogaste	0.547	0.224	0.579	4.2e-40
ZFIN|ZDB-GENE-070615-16	622	ppwd1 "peptidylprolyl isomeras	0.816	0.342	0.410	9.2e-40

UNIPROTKB|D6R9Q1 PPWD1 "Peptidylprolyl isomerase domain and WD repeat-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 85/140 (60%), Positives = 105/140 (75%)

Query:     1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
             MHR  ITHVV TKTDF+ITAS+DGH+KFWKK EEGIEFVKHFRSHLGVI SI  +  G L
Sbjct:     7 MHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGAL 66

Query:    61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
              C+V  DKAMKVFDV+NFDMINM+KL + P   E I+  GDAI + A S++ + ++ IYD
Sbjct:    67 FCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYD 126

Query:   121 CKG-NDMINMI-KLDFTPLT 138
              +G N  +++  KL  +PLT
Sbjct:   127 GRGDNQPLHIFDKLHTSPLT 146

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F5H7P7 PPWD1 "Peptidylprolyl isomerase domain and WD repeat-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 85/140 (60%), Positives = 105/140 (75%)

Query:     1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
             MHR  ITHVV TKTDF+ITAS+DGH+KFWKK EEGIEFVKHFRSHLGVI SI  +  G L
Sbjct:    58 MHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGAL 117

Query:    61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
              C+V  DKAMKVFDV+NFDMINM+KL + P   E I+  GDAI + A S++ + ++ IYD
Sbjct:   118 FCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYD 177

Query:   121 CKG-NDMINMI-KLDFTPLT 138
              +G N  +++  KL  +PLT
Sbjct:   178 GRGDNQPLHIFDKLHTSPLT 197

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

MGI|MGI:2443069 Ppwd1 "peptidylprolyl isomerase domain and WD repeat containing 1" [Mus musculus (taxid:10090)]

 Score = 434 (157.8 bits), Expect = 1.3e-40, P = 1.3e-40
 Identities = 85/140 (60%), Positives = 105/140 (75%)

Query:     1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
             MHR  ITHVV TKTDF+ITAS+DGH+KFWKK EEGIEFVKHFRSHLGVI SI  +  G L
Sbjct:    88 MHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGAL 147

Query:    61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
              C+V  DKAMKVFDV+NFDMINM+KL + P   E I+  GDAI + A S++ + ++ IYD
Sbjct:   148 FCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYD 207

Query:   121 CKG-NDMINMI-KLDFTPLT 138
              +G N  +++  KL  +PLT
Sbjct:   208 GRGDNQPLHIFDKLHVSPLT 227

GO:0003674 "molecular_function" evidence=ND

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|Q29RZ2 PPWD1 "Peptidylprolyl isomerase domain and WD repeat-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 433 (157.5 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 85/140 (60%), Positives = 105/140 (75%)

Query:     1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
             MHR  ITHVV TKTDF+ITAS+DGH+KFWKK EEGIEFVKHFRSHLGVI SI  +  G L
Sbjct:    86 MHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGAL 145

Query:    61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
              C+V  DKAMKVFDV+NFDMINM+KL + P   E I+  GDAI + A S++ + ++ IYD
Sbjct:   146 FCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYD 205

Query:   121 CKG-NDMINMI-KLDFTPLT 138
              +G N  +++  KL  +PLT
Sbjct:   206 GRGDNQPLHIFDKLHTSPLT 225

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|Q96BP3 PPWD1 "Peptidylprolyl isomerase domain and WD repeat-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 433 (157.5 bits), Expect = 1.7e-40, P = 1.7e-40
 Identities = 85/140 (60%), Positives = 105/140 (75%)

Query:     1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
             MHR  ITHVV TKTDF+ITAS+DGH+KFWKK EEGIEFVKHFRSHLGVI SI  +  G L
Sbjct:    88 MHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGAL 147

Query:    61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
              C+V  DKAMKVFDV+NFDMINM+KL + P   E I+  GDAI + A S++ + ++ IYD
Sbjct:   148 FCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYD 207

Query:   121 CKG-NDMINMI-KLDFTPLT 138
              +G N  +++  KL  +PLT
Sbjct:   208 GRGDNQPLHIFDKLHTSPLT 227

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

RGD|1310204 Ppwd1 "peptidylprolyl isomerase domain and WD repeat containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 433 (157.5 bits), Expect = 1.7e-40, P = 1.7e-40
 Identities = 84/140 (60%), Positives = 105/140 (75%)

Query:     1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
             MHR  ITHVV TKTDF+ITAS+DGH+KFWKK EEGIEFVKHFRSHLG+I SI  +  G L
Sbjct:    88 MHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGIIESIAVSSEGAL 147

Query:    61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
              C+V  DKAMKVFDV+NFDMINM+KL + P   E I+  GDAI + A S++ + ++ IYD
Sbjct:   148 FCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYD 207

Query:   121 CKG-NDMINMI-KLDFTPLT 138
              +G N  +++  KL  +PLT
Sbjct:   208 GRGDNQPLHIFDKLHVSPLT 227

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|E2RIS6 PPWD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 433 (157.5 bits), Expect = 1.7e-40, P = 1.7e-40
 Identities = 85/140 (60%), Positives = 105/140 (75%)

Query:     1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
             MHR  ITHVV TKTDF+ITAS+DGH+KFWKK EEGIEFVKHFRSHLGVI SI  +  G L
Sbjct:    88 MHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGAL 147

Query:    61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
              C+V  DKAMKVFDV+NFDMINM+KL + P   E I+  GDAI + A S++ + ++ IYD
Sbjct:   148 FCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYD 207

Query:   121 CKG-NDMINMI-KLDFTPLT 138
              +G N  +++  KL  +PLT
Sbjct:   208 GRGDNQPLHIFDKLHTSPLT 227

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|F1SKT8 PPWD1 "Peptidylprolyl isomerase domain and WD repeat-containing 1" [Sus scrofa (taxid:9823)]

 Score = 432 (157.1 bits), Expect = 2.2e-40, P = 2.2e-40
 Identities = 84/140 (60%), Positives = 105/140 (75%)

Query:     1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
             MHR  ITHVV TKTDF+ITAS+DGH+KFWKK EEGIEFVKHFRSHLG+I SI  +  G L
Sbjct:    88 MHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGIIESIAVSSEGAL 147

Query:    61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
              C+V  DKAMKVFDV+NFDMINM+KL + P   E I+  GDAI + A S++ + ++ IYD
Sbjct:   148 FCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYD 207

Query:   121 CKG-NDMINMI-KLDFTPLT 138
              +G N  +++  KL  +PLT
Sbjct:   208 GRGDNQPLHIFDKLHTSPLT 227

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

FB|FBgn0035027 CG3511 [Drosophila melanogaster (taxid:7227)]

 Score = 429 (156.1 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 84/145 (57%), Positives = 108/145 (74%)

Query:     1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
             MHR  ITH+V TKTDFV+TAS DGHIKFWKK E GIEFVKHFRSHL  I S+ TN +GTL
Sbjct:    79 MHRDVITHLVCTKTDFVVTASLDGHIKFWKKGELGIEFVKHFRSHLVPIKSLTTNDSGTL 138

Query:    61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
             LC+ A+D+  KVFDV+NFDMIN+I+L +TP   E I+  GDA+   A+SD +SSR+HIYD
Sbjct:   139 LCSAATDQTAKVFDVVNFDMINIIRLGYTPQCSEWINGPGDAVQALAISDSESSRIHIYD 198

Query:   121 CKGN-DMINMI-KLDFTPLTVECIH 143
              +G  + ++ + KL   P+   C++
Sbjct:   199 GQGGGEALHTLEKLHSAPVVAMCLN 223

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-070615-16 ppwd1 "peptidylprolyl isomerase domain and WD repeat containing 1" [Danio rerio (taxid:7955)]

 Score = 425 (154.7 bits), Expect = 9.2e-40, P = 9.2e-40
 Identities = 90/219 (41%), Positives = 132/219 (60%)

Query:    45 HLGVI-HSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPL-TVECIHYLGDA 102
             H  VI H +C+  +   + T + D  +K +     + +  +K   + L  +ECI    + 
Sbjct:    64 HRDVITHIVCSKTD--FILTASQDGHVKFWKKKEDEGVEFVKHFRSHLGVIECISVSAEG 121

Query:   103 IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV 162
                 +V D  + +V  +D    DMINM+KL F P   E I+  GDAI T A S++ +  +
Sbjct:   122 ALLCSVGDDQAMKV--FDVVNFDMINMLKLGFHPGQCEWIYNPGDAISTIACSEKSTGKI 179

Query:   163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCV 222
              +YD +G+  PLHV +++HT P+  I+ NP Y+V+VS DKAG+LEYW+G   EFKFP+ V
Sbjct:   180 FVYDGRGSNQPLHVFEKMHTTPLSQIRLNPKYRVIVSADKAGMLEYWTGLPSEFKFPRQV 239

Query:   223 HFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261
              +E K DTDL+EFAK  TYP+ L+FS DG K  TI++DR
Sbjct:   240 DWEFKTDTDLYEFAKCGTYPTSLAFSQDGKKMATIAVDR 278

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	261
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 51/260 (19%), Positives = 96/260 (36%), Gaps = 28/260 (10%)

Query: 2   HRSPITHVV-VTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           H  P+  V       ++ + S+D  I+ W  +    E V+    H   + S+  + +G +
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRI 107

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
           L + + DK +KV+DV     +    L      V  + +  D     A S QD + + ++D
Sbjct: 108 LSSSSRDKTIKVWDVETGKCL--TTLRGHTDWVNSVAFSPDG-TFVASSSQDGT-IKLWD 163

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
                   +  L      V  + +  D     + S      + ++D    G  L  L R 
Sbjct: 164 --LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS--SDGTIKLWDLST-GKCLGTL-RG 217

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           H   V  + F+P   ++ S  + G +  W     E                +   + +  
Sbjct: 218 HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC---------------VQTLSGHTN 262

Query: 241 YPSGLSFSPDGNKFVTISMD 260
             + L++SPDG +  + S D
Sbjct: 263 SVTSLAWSPDGKRLASGSAD 282

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 46/260 (17%), Positives = 95/260 (36%), Gaps = 23/260 (8%)

Query: 2   HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL 61
                       +  + ++S DG +K W     G + ++    H   + S+  + +G LL
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG-KLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 62  CTVAS-DKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
            + +S D  +K++D+       +  L      V  + +  D     A    D + + ++D
Sbjct: 171 ASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT-IRLWD 227

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
                ++       +   V      G  +   A    D + + ++D + + + L  L   
Sbjct: 228 LSTGKLLRSTLSGHSDSVVSSFSPDGSLL---ASGSSDGT-IRLWDLRSSSSLLRTLSG- 282

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           H+  V+ + F+P  +++ S    G +  W               E+           ++ 
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWD-------------LETGKLLSSLTLKGHEG 329

Query: 241 YPSGLSFSPDGNKFVTISMD 260
             S LSFSPDG+  V+   D
Sbjct: 330 PVSSLSFSPDGSLLVSGGSD 349

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 43/262 (16%), Positives = 90/262 (34%), Gaps = 26/262 (9%)

Query: 2   HRSPITHVVVT--KTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGT 59
           H  P++ +  +      + + S+DG I+ W     G         H   + S  +     
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSVVSSFSPDGSL 255

Query: 60  LLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIY 119
           L  + +SD  ++++D +      +  L     +V  + +  D    A+ S   +  V ++
Sbjct: 256 LA-SGSSDGTIRLWD-LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT--VRLW 311

Query: 120 DCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR 179
           D +   +++ + L      V  + +  D          D   + ++D +   T   +   
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPD-GSLLVSGGSDDGTIRLWDLR---TGKPLKTL 367

Query: 180 LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK 239
                V+ + F+P  +VV S    G +  W                +       +   ++
Sbjct: 368 EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWD-------------LSTGSLLRNLDGHTSR 414

Query: 240 TYPSGLSFSPDGNKFVTISMDR 261
                L FSPDG    + S D 
Sbjct: 415 VTS--LDFSPDGKSLASGSSDN 434

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 32/216 (14%), Positives = 77/216 (35%), Gaps = 9/216 (4%)

Query: 2   HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL 61
           H   +          + + S+DG I+ W  +      ++    H   + S+  + +G LL
Sbjct: 241 HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL-LRTLSGHSSSVLSVAFSPDGKLL 299

Query: 62  CTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC 121
            + +SD  ++++D+    +++ + L      V  + +  D          D   + ++D 
Sbjct: 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD-GSLLVSGGSDDGTIRLWDL 358

Query: 122 KGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLH 181
           +    +  ++       V  + +  D    ++ S   +  V ++D   +   L      H
Sbjct: 359 RTGKPLKTLE---GHSNVLSVSFSPDGRVVSSGSTDGT--VRLWDL--STGSLLRNLDGH 411

Query: 182 TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK 217
           T  V  + F+P  + + S      +  W        
Sbjct: 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 45/264 (17%), Positives = 90/264 (34%), Gaps = 25/264 (9%)

Query: 2   HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSIC---TNYN 57
           H   IT +  +   + +++ S+DG IK W               H   +  +     + N
Sbjct: 64  HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123

Query: 58  GTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVH 117
             LL + + D  +K++D ++     +  L+    +V  + +  D     A        + 
Sbjct: 124 SILLASSSLDGTVKLWD-LSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIK 181

Query: 118 IYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVL 177
           ++D +      +  L      V  + +  D     A    D + + ++D    G  L   
Sbjct: 182 LWDLRTGK--PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT-IRLWDLS-TGKLLRST 237

Query: 178 DRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK 237
              H+  VV   F+P   ++ S    G +  W                    + L   + 
Sbjct: 238 LSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWD--------------LRSSSSLLRTLSG 282

Query: 238 NKTYPSGLSFSPDGNKFVTISMDR 261
           + +    ++FSPDG    + S D 
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDG 306

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 2   HRSPITHVVV-TKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           H + +  V        + + S DG I+ W  +    E V+    H   + S+  + +G  
Sbjct: 218 HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG--ECVQTLSGHTNSVTSLAWSPDGKR 275

Query: 61  LCTVASDKAMKVFD 74
           L + ++D  ++++D
Sbjct: 276 LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 25/223 (11%)

Query: 39  VKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHY 98
            +  + H G +  +  + +G LL T + D  +KV+D+   +++  +K       V  +  
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT--GPVRDVAA 59

Query: 99  LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD 158
             D    A+ S   + R  ++D +  + +  +    +   V  + +  D     + S +D
Sbjct: 60  SADGTYLASGSSDKTIR--LWDLETGECVRTLTGHTSY--VSSVAFSPD-GRILSSSSRD 114

Query: 159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF 218
            + + ++D +  G  L  L R HT  V  + F+P    V S  + G ++ W         
Sbjct: 115 KT-IKVWDVE-TGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG---- 167

Query: 219 PKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR 261
            KCV               +    + ++FSPDG K ++ S D 
Sbjct: 168 -KCVA----------TLTGHTGEVNSVAFSPDGEKLLSSSSDG 199

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 21/221 (9%)

Query: 42  FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYL-G 100
            R H   I SI  + +G LL + +SD  +K++D+ N + +          +V  +     
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 101 DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS 160
           D       S      V ++D        +  L+    +V  + +  D    A+ S  D +
Sbjct: 121 DGNSILLASSSLDGTVKLWD-LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPI-YQVVVSVDKAGILEYWSGYKQEFKFP 219
            + ++D +  G PL  L   HT PV  + F+P    ++ S    G +  W          
Sbjct: 180 -IKLWDLR-TGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD-----LSTG 231

Query: 220 KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD 260
           K +       +D              SFSPDG+   + S D
Sbjct: 232 KLLRSTLSGHSD----------SVVSSFSPDGSLLASGSSD 262

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0272|consensus	459		100.0
KOG0279|consensus	315		100.0
KOG0286|consensus	343		100.0
KOG0265|consensus	338		100.0
KOG0263|consensus	707		100.0
KOG0315|consensus	311		100.0
KOG0263|consensus	707		100.0
KOG0279|consensus	315		100.0
KOG0273|consensus	524		100.0
KOG0295|consensus	406		100.0
KOG0295|consensus	406		100.0
KOG0285|consensus	460		100.0
KOG0284|consensus	464		100.0
KOG0282|consensus	503		100.0
KOG0266|consensus	456		100.0
KOG0284|consensus	464		100.0
KOG0645|consensus	312		100.0
KOG0291|consensus	893		100.0
KOG0291|consensus	893		100.0
KOG0643|consensus	327		100.0
KOG0315|consensus	311		100.0
KOG0266|consensus	456		100.0
KOG0318|consensus	603		100.0
KOG0296|consensus	399		100.0
KOG0316|consensus	307		100.0
KOG0273|consensus	524		100.0
KOG0286|consensus	343		100.0
KOG0277|consensus	311		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0276|consensus	794		100.0
KOG1407|consensus	313		100.0
KOG0319|consensus	775		100.0
KOG0271|consensus	480		100.0
KOG0281|consensus	499		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0293|consensus	519		100.0
KOG0645|consensus	312		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0292|consensus	1202		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0276|consensus	794		100.0
KOG0318|consensus	603		100.0
KOG0313|consensus	423		100.0
KOG0268|consensus	433		100.0
KOG0281|consensus	499		100.0
KOG0283|consensus	712		100.0
KOG0640|consensus	430		100.0
KOG1407|consensus	313		100.0
KOG0292|consensus	1202		100.0
KOG0285|consensus	460		100.0
KOG0647|consensus	347		100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0278|consensus	334		100.0
KOG0289|consensus	506		100.0
KOG0316|consensus	307		100.0
KOG0973|consensus	942		100.0
KOG0319|consensus	775		100.0
KOG0275|consensus	508		100.0
KOG0288|consensus	459		100.0
KOG0310|consensus	487		100.0
KOG1332|consensus	299		100.0
KOG0299|consensus	479		100.0
KOG0264|consensus	422		100.0
KOG0289|consensus	506		100.0
KOG0275|consensus	508		100.0
KOG0277|consensus	311		100.0
KOG1446|consensus	311		99.98
KOG0282|consensus	503		99.98
KOG0278|consensus	334		99.98
KOG0296|consensus	399		99.98
KOG0306|consensus	888		99.98
KOG0305|consensus	484		99.98
KOG0274|consensus	537		99.98
KOG0308|consensus	735		99.98
KOG0310|consensus	487		99.98
KOG0313|consensus	423		99.98
KOG0641|consensus	350		99.97
KOG0300|consensus	481		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0294|consensus	362		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0306|consensus	888		99.97
KOG0772|consensus	641		99.97
KOG1036|consensus	323		99.97
KOG0641|consensus	350		99.97
KOG2096|consensus	420		99.97
KOG0274|consensus	537		99.97
KOG0265|consensus	338		99.97
KOG1446|consensus	311		99.97
KOG0283|consensus	712		99.97
KOG0288|consensus	459		99.97
KOG0646|consensus	476		99.97
KOG0293|consensus	519		99.97
KOG0269|consensus	839		99.97
KOG0267|consensus	825		99.97
KOG4283|consensus	397		99.97
KOG0300|consensus	481		99.96
KOG2445|consensus	361		99.96
KOG0294|consensus	362		99.96
KOG1036|consensus	323		99.96
KOG2055|consensus	514		99.96
KOG0299|consensus	479		99.96
KOG0305|consensus	484		99.96
KOG0301|consensus	745		99.96
KOG0772|consensus	641		99.96
KOG0301|consensus	745		99.96
KOG0264|consensus	422		99.96
KOG0643|consensus	327		99.95
KOG0639|consensus	705		99.95
KOG0302|consensus	440		99.95
KOG0639|consensus	705		99.95
KOG0973|consensus	942		99.95
KOG2048|consensus	691		99.95
KOG1273|consensus	405		99.95
KOG0308|consensus	735		99.95
KOG0307|consensus	1049		99.95
KOG4328|consensus	498		99.95
KOG4378|consensus	673		99.94
KOG0640|consensus	430		99.94
KOG1274|consensus	933		99.94
KOG1408|consensus	1080		99.94
KOG2106|consensus	626		99.94
KOG0650|consensus	733		99.94
KOG0270|consensus	463		99.94
KOG0268|consensus	433		99.94
KOG1332|consensus	299		99.94
KOG1007|consensus	370		99.94
KOG0321|consensus	720		99.93
KOG1539|consensus	910		99.93
KOG0646|consensus	476		99.93
KOG0267|consensus	825		99.93
KOG4283|consensus	397		99.93
KOG2055|consensus	514		99.93
KOG0269|consensus	839		99.93
KOG1063|consensus	764		99.93
KOG2048|consensus	691		99.92
KOG1009|consensus	434		99.92
KOG1274|consensus	933		99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0303|consensus	472		99.92
KOG0270|consensus	463		99.92
KOG1539|consensus	910		99.92
KOG0647|consensus	347		99.92
KOG1063|consensus	764		99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG0302|consensus	440		99.91
KOG0642|consensus	577		99.91
KOG2096|consensus	420		99.91
KOG0322|consensus	323		99.9
KOG1445|consensus	1012		99.9
KOG1034|consensus	385		99.9
KOG1188|consensus	376		99.9
KOG2919|consensus	406		99.9
KOG0290|consensus	364		99.9
KOG4227|consensus	609		99.9
KOG4378|consensus	673		99.89
KOG1408|consensus	1080		99.89
KOG1587|consensus	555		99.88
KOG2110|consensus	391		99.88
KOG2106|consensus	626		99.88
KOG2919|consensus	406		99.88
KOG1007|consensus	370		99.88
KOG1538|consensus	1081		99.88
KOG2445|consensus	361		99.88
KOG0321|consensus	720		99.87
KOG1034|consensus	385		99.87
KOG4328|consensus	498		99.87
KOG0642|consensus	577		99.87
KOG0771|consensus	398		99.87
KOG0644|consensus	1113		99.86
KOG1524|consensus	737		99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0649|consensus	325		99.85
KOG1538|consensus	1081		99.85
KOG0771|consensus	398		99.85
KOG2111|consensus	346		99.85
KOG0650|consensus	733		99.84
KOG0307|consensus	1049		99.84
KOG1273|consensus	405		99.84
KOG0303|consensus	472		99.83
KOG1310|consensus	758		99.83
PRK01742	429	tolB translocation protein TolB; Provisional	99.83
KOG1963|consensus	792		99.82
KOG0649|consensus	325		99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.82
KOG2110|consensus	391		99.82
KOG1188|consensus	376		99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.81
KOG1523|consensus	361		99.81
KOG1524|consensus	737		99.8
KOG1009|consensus	434		99.8
KOG2111|consensus	346		99.8
KOG0322|consensus	323		99.79
KOG1517|consensus	1387		99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
KOG1240|consensus	1431		99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1517|consensus	1387		99.77
KOG1523|consensus	361		99.76
KOG1445|consensus	1012		99.76
KOG3881|consensus	412		99.75
KOG0290|consensus	364		99.75
KOG2394|consensus	636		99.75
KOG1963|consensus	792		99.75
KOG1272|consensus	545		99.74
KOG2321|consensus	703		99.73
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.7
PRK05137	435	tolB translocation protein TolB; Provisional	99.7
KOG4227|consensus	609		99.7
KOG1587|consensus	555		99.7
PRK02889	427	tolB translocation protein TolB; Provisional	99.7
KOG1310|consensus	758		99.7
PRK04922	433	tolB translocation protein TolB; Provisional	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.68
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.68
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
KOG2139|consensus	445		99.68
KOG1334|consensus	559		99.67
KOG3881|consensus	412		99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
KOG1240|consensus	1431		99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.66
KOG0882|consensus	558		99.65
PRK02889	427	tolB translocation protein TolB; Provisional	99.65
KOG1272|consensus	545		99.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.63
KOG0644|consensus	1113		99.62
KOG1354|consensus	433		99.62
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.62
KOG4547|consensus	541		99.61
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.6
KOG2394|consensus	636		99.6
KOG4497|consensus	447		99.59
KOG2139|consensus	445		99.58
KOG2315|consensus	566		99.56
KOG0280|consensus	339		99.56
KOG1064|consensus	2439		99.56
KOG1409|consensus	404		99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.54
PRK00178	430	tolB translocation protein TolB; Provisional	99.54
KOG4497|consensus	447		99.53
KOG4547|consensus	541		99.53
PRK04792	448	tolB translocation protein TolB; Provisional	99.53
PRK00178	430	tolB translocation protein TolB; Provisional	99.51
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.51
PRK04792	448	tolB translocation protein TolB; Provisional	99.5
KOG1354|consensus	433		99.48
KOG0280|consensus	339		99.47
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.47
KOG2321|consensus	703		99.47
KOG2314|consensus	698		99.47
KOG0974|consensus	967		99.47
KOG4190|consensus	1034		99.47
PRK01029	428	tolB translocation protein TolB; Provisional	99.46
KOG2041|consensus	1189		99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
KOG4532|consensus	344		99.45
KOG1334|consensus	559		99.44
KOG1409|consensus	404		99.43
KOG2041|consensus	1189		99.41
KOG0974|consensus	967		99.41
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.4
KOG4190|consensus	1034		99.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.37
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.35
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.35
PRK04043	419	tolB translocation protein TolB; Provisional	99.34
COG4946	668	Uncharacterized protein related to the periplasmic	99.31
KOG4532|consensus	344		99.26
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.25
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.23
KOG1064|consensus	2439		99.22
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.21
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.19
COG4946	668	Uncharacterized protein related to the periplasmic	99.19
KOG4714|consensus	319		99.17
KOG2315|consensus	566		99.16
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.15
KOG0309|consensus	1081		99.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.14
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.13
KOG2695|consensus	425		99.13
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.12
KOG3914|consensus	390		99.12
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.09
KOG0309|consensus	1081		99.07
KOG1275|consensus	1118		99.06
KOG1912|consensus	1062		99.06
KOG1832|consensus	1516		99.06
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.01
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.01
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.0
KOG1912|consensus	1062		98.99
KOG4714|consensus	319		98.95
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.95
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.95
KOG2066|consensus	846		98.92
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.91
KOG2114|consensus	933		98.9
KOG2695|consensus	425		98.9
KOG3914|consensus	390		98.9
KOG1920|consensus	1265		98.84
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.83
KOG1832|consensus	1516		98.81
KOG1645|consensus	463		98.8
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.69
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.68
KOG2114|consensus	933		98.67
KOG1008|consensus	783		98.66
PRK02888	635	nitrous-oxide reductase; Validated	98.62
KOG3617|consensus	1416		98.6
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.6
KOG1275|consensus	1118		98.58
KOG2066|consensus	846		98.58
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.54
KOG2314|consensus	698		98.54
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.53
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.53
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.53
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.52
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.43
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.41
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.38
KOG0882|consensus	558		98.36
KOG1645|consensus	463		98.35
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.33
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.29
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.29
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.29
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.29
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	98.27
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.27
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.22
COG3391	381	Uncharacterized conserved protein [Function unknow	98.22
KOG1008|consensus	783		98.22
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.21
KOG4640|consensus	665		98.19
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.18
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.17
KOG1920|consensus	1265		98.15
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.12
KOG4649|consensus	354		98.1
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.1
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.09
KOG4640|consensus	665		98.05
KOG2395|consensus	644		98.03
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.0
KOG3617|consensus	1416		98.0
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.96
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.95
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.95
PRK02888	635	nitrous-oxide reductase; Validated	97.93
KOG3621|consensus	726		97.91
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.9
KOG2444|consensus	238		97.81
KOG4649|consensus	354		97.79
KOG2395|consensus	644		97.78
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.78
COG3391	381	Uncharacterized conserved protein [Function unknow	97.77
KOG3621|consensus	726		97.73
KOG4441|consensus	571		97.64
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.63
PHA02713	557	hypothetical protein; Provisional	97.58
KOG4441|consensus	571		97.57
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.56
KOG2079|consensus	1206		97.56
PRK13616	591	lipoprotein LpqB; Provisional	97.47
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.41
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.41
KOG3630|consensus	1405		97.39
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.36
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.33
KOG2444|consensus	238		97.24
KOG2280|consensus	829		97.22
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.21
KOG2079|consensus	1206		97.19
PHA02713	557	hypothetical protein; Provisional	97.18
PHA03098	534	kelch-like protein; Provisional	97.15
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.14
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.13
PRK13616	591	lipoprotein LpqB; Provisional	97.07
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.06
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.98
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.92
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.89
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.87
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.82
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.72
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.47
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.39
COG5167	776	VID27 Protein involved in vacuole import and degra	96.32
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.25
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.19
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.16
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.11
PRK10115	686	protease 2; Provisional	96.1
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	96.1
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.07
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.03
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.99
COG5167	776	VID27 Protein involved in vacuole import and degra	95.91
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.87
PHA02790	480	Kelch-like protein; Provisional	95.83
PHA03098	534	kelch-like protein; Provisional	95.81
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.76
KOG1898|consensus	1205		95.73
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.67
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.62
KOG1897|consensus	1096		95.6
COG5276	370	Uncharacterized conserved protein [Function unknow	95.58
KOG1897|consensus	1096		95.57
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.56
KOG1916|consensus	1283		95.53
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.48
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.44
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.11
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.07
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.91
KOG4499|consensus	310		94.57
KOG1916|consensus	1283		94.41
KOG2377|consensus	657		94.36
KOG2247|consensus	615		94.21
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.2
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.91
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.81
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.76
KOG2377|consensus	657		93.56
PHA02790	480	Kelch-like protein; Provisional	93.54
KOG3630|consensus	1405		93.42
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	93.19
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.16
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	93.05
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.95
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	92.88
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.82
KOG1900|consensus	1311		92.73
KOG2247|consensus	615		92.69
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	92.65
PRK13684	334	Ycf48-like protein; Provisional	92.23
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.07
KOG2280|consensus	829		91.97
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.67
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.39
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.37
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.14
KOG4499|consensus	310		91.04
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	90.91
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.87
KOG1983|consensus	993		90.07
COG4590	733	ABC-type uncharacterized transport system, permeas	89.61
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.6
COG4590	733	ABC-type uncharacterized transport system, permeas	89.47
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.32
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.15
KOG4460|consensus	741		88.91
PF14727	418	PHTB1_N: PTHB1 N-terminus	88.6
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.01
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	87.75
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.45
KOG1896|consensus	1366		87.42
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	87.18
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.84
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.83
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	86.76
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.69
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	86.65
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	86.61
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.53
PLN02153	341	epithiospecifier protein	86.1
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	86.08
PRK10115	686	protease 2; Provisional	85.9
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.07
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.6
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	84.54
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	83.44
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	83.39
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	82.82
PLN02193	470	nitrile-specifier protein	81.74
KOG1896|consensus	1366		81.35
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	81.21
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	80.88
KOG3616|consensus	1636		80.86
KOG4460|consensus	741		80.33

>KOG0271|consensus

Probab=100.00  E-value=5.9e-48  Score=276.59  Aligned_cols=240  Identities=15%  Similarity=0.214  Sum_probs=197.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.++|.|++|+| +..|++|+.|.++|+||+.+.  .+..+.++|...|.|++|+|||+.|++|+.||+|++||..+++
T Consensus       113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~  190 (480)
T KOG0271|consen  113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ  190 (480)
T ss_pred             CCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence            8999999999999 999999999999999999998  8899999999999999999999999999999999999999886


Q ss_pred             ee-eeeeccCcceeEEEEeec-----CCceeee-------------------------------------eeecCCCCeE
Q psy6859          80 MI-NMIKLDFTPLTVECIHYL-----GDAIPTA-------------------------------------AVSDQDSSRV  116 (261)
Q Consensus        80 ~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~-------------------------------------~~s~~~d~~i  116 (261)
                      ++ ..+..|...+..+++.|-     .+++++.                                     .++|+.|++|
T Consensus       191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI  270 (480)
T KOG0271|consen  191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI  270 (480)
T ss_pred             cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE
Confidence            54 455555555555555431     1222211                                     2334555555


Q ss_pred             EEEEcCCCceeeEEe-----------------------------------------------------------------
Q psy6859         117 HIYDCKGNDMINMIK-----------------------------------------------------------------  131 (261)
Q Consensus       117 ~i~d~~~~~~~~~~~-----------------------------------------------------------------  131 (261)
                      ++|+...+.+.+.++                                                                 
T Consensus       271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlfl  350 (480)
T KOG0271|consen  271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFL  350 (480)
T ss_pred             EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEE
Confidence            555554433222220                                                                 


Q ss_pred             ------------ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEE
Q psy6859         132 ------------LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVS  199 (261)
Q Consensus       132 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  199 (261)
                                  ...+...|..+.|+||+.+  +++++-|..|++||.+ +++.+..|. +|-++|+.++|+.|.++|++
T Consensus       351 W~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~--IASaSFDkSVkLW~g~-tGk~lasfR-GHv~~VYqvawsaDsRLlVS  426 (480)
T KOG0271|consen  351 WNPFKSKKPITRMTGHQALVNHVSFSPDGRY--IASASFDKSVKLWDGR-TGKFLASFR-GHVAAVYQVAWSADSRLLVS  426 (480)
T ss_pred             ecccccccchhhhhchhhheeeEEECCCccE--EEEeecccceeeeeCC-Ccchhhhhh-hccceeEEEEeccCccEEEE
Confidence                        0112335788999999987  9999999999999999 999999998 99999999999999999999


Q ss_pred             EcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         200 VDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       200 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |+.|.++++|+++               +.+....+.+|.+.|.++.|+|||..+++|+.|+
T Consensus       427 ~SkDsTLKvw~V~---------------tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  427 GSKDSTLKVWDVR---------------TKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             cCCCceEEEEEee---------------eeeecccCCCCCceEEEEEecCCCceeecCCCce
Confidence            9999999999995               4677888999999999999999999999999985

>KOG0272|consensus

Probab=100.00  E-value=1e-47  Score=278.05  Aligned_cols=234  Identities=18%  Similarity=0.251  Sum_probs=218.3

Q ss_pred             CCCCCeEEEEEcCC---CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTKT---DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      ||++.|.++.|+|.   ..+|||+.||++++|++++.  .++..+.+|...|..++|+|+|++|+|++.|.+-++||+.+
T Consensus       215 gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t  292 (459)
T KOG0272|consen  215 GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET  292 (459)
T ss_pred             ccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecCCCceeeecccccchhhccccc
Confidence            89999999999993   37999999999999999987  88999999999999999999999999999999999999999


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ++.+.....|...+..+.+.++|..+.++    +.|..-+|||++++.++..+..  +...|..++|+|+|..  +++|+
T Consensus       293 k~ElL~QEGHs~~v~~iaf~~DGSL~~tG----GlD~~~RvWDlRtgr~im~L~g--H~k~I~~V~fsPNGy~--lATgs  364 (459)
T KOG0272|consen  293 KSELLLQEGHSKGVFSIAFQPDGSLAATG----GLDSLGRVWDLRTGRCIMFLAG--HIKEILSVAFSPNGYH--LATGS  364 (459)
T ss_pred             chhhHhhcccccccceeEecCCCceeecc----CccchhheeecccCcEEEEecc--cccceeeEeECCCceE--EeecC
Confidence            99998888899999999999999766555    9999999999999999999987  4558999999999976  99999


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcC-CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP-IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      .|++++|||++ ..+++.++. +|.+-|+.++|+| .|.+|++++.|++++||..               .+..+++.+.
T Consensus       365 ~Dnt~kVWDLR-~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~---------------~~~~~~ksLa  427 (459)
T KOG0272|consen  365 SDNTCKVWDLR-MRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST---------------RTWSPLKSLA  427 (459)
T ss_pred             CCCcEEEeeec-ccccceecc-cccchhhheEecccCCeEEEEcccCcceeeecC---------------CCcccchhhc
Confidence            99999999999 788899998 9999999999999 6789999999999999998               4588999999


Q ss_pred             CCccceeeeeECCCCceEEEeecCC
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ||++.|.++..+||++++++++.|+
T Consensus       428 GHe~kV~s~Dis~d~~~i~t~s~DR  452 (459)
T KOG0272|consen  428 GHEGKVISLDISPDSQAIATSSFDR  452 (459)
T ss_pred             CCccceEEEEeccCCceEEEeccCc
Confidence            9999999999999999999999985

>KOG0272|consensus

Probab=100.00  E-value=5.5e-45  Score=263.97  Aligned_cols=234  Identities=18%  Similarity=0.253  Sum_probs=216.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC--CCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN--GTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~v~~wd~~~   77 (261)
                      |-+.+|..+.|++ ++.|+||+-+|.++||+..+.  ..+.+|.+|.+.|.++.|+|.  +..+++|+.||++++|++.+
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            4467999999999 899999999999999999886  888999999999999999996  66899999999999999999


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ..++..+..|...+..+.++|+|+.+.+.    +.|.+-++||++++..+...++  +...+.+++|++||.  ++++|+
T Consensus       251 e~~l~~l~gH~~RVs~VafHPsG~~L~Ta----sfD~tWRlWD~~tk~ElL~QEG--Hs~~v~~iaf~~DGS--L~~tGG  322 (459)
T KOG0272|consen  251 ETPLQDLEGHLARVSRVAFHPSGKFLGTA----SFDSTWRLWDLETKSELLLQEG--HSKGVFSIAFQPDGS--LAATGG  322 (459)
T ss_pred             CcchhhhhcchhhheeeeecCCCceeeec----ccccchhhcccccchhhHhhcc--cccccceeEecCCCc--eeeccC
Confidence            89999999999999999999999999888    9999999999999987777666  455789999999996  589999


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      .|..-+|||++ ++..+..+. +|..+|.++.|+|+|..||+|+.|++++|||++.               ...+.++.+
T Consensus       323 lD~~~RvWDlR-tgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~---------------r~~ly~ipA  385 (459)
T KOG0272|consen  323 LDSLGRVWDLR-TGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM---------------RSELYTIPA  385 (459)
T ss_pred             ccchhheeecc-cCcEEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeecc---------------cccceeccc
Confidence            99999999999 999999998 9999999999999999999999999999999954               566899999


Q ss_pred             CccceeeeeECC-CCceEEEeecCC
Q psy6859         238 NKTYPSGLSFSP-DGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~-~~~~l~s~~~Dg  261 (261)
                      |.+-|+.|+|+| .|.+|+|+|.|+
T Consensus       386 H~nlVS~Vk~~p~~g~fL~TasyD~  410 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQEGYFLVTASYDN  410 (459)
T ss_pred             ccchhhheEecccCCeEEEEcccCc
Confidence            999999999999 889999999995

>KOG0279|consensus

Probab=100.00  E-value=6.4e-41  Score=231.09  Aligned_cols=235  Identities=16%  Similarity=0.224  Sum_probs=208.1

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCce---eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGI---EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      ||++.|+.++..+  .+.+++++.|.++.+|++...+.   .+++.+.+|...|..+..++||++.++++.|+++++||+
T Consensus        13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl   92 (315)
T KOG0279|consen   13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL   92 (315)
T ss_pred             CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence            7999999999998  47899999999999999876432   458899999999999999999999999999999999999


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      .+++..+.|..|...+..+.++++..++.+.    +.|++|++|+.... +..++....+...|.|+.|+|+....++++
T Consensus        93 ~~g~~t~~f~GH~~dVlsva~s~dn~qivSG----SrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs  167 (315)
T KOG0279|consen   93 ATGESTRRFVGHTKDVLSVAFSTDNRQIVSG----SRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVS  167 (315)
T ss_pred             cCCcEEEEEEecCCceEEEEecCCCceeecC----CCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence            9999999999999999999999999888776    99999999998876 444444443477999999999976667999


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF  235 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
                      ++.|+++++||++ +.+....+. +|+..++.+++||||.++++|+.||.+.+||++.               ++.++.+
T Consensus       168 ~s~DktvKvWnl~-~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~---------------~k~lysl  230 (315)
T KOG0279|consen  168 ASWDKTVKVWNLR-NCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE---------------GKNLYSL  230 (315)
T ss_pred             ccCCceEEEEccC-Ccchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccC---------------CceeEec
Confidence            9999999999999 888888887 9999999999999999999999999999999964               5666665


Q ss_pred             CCCccceeeeeECCCCceEEEee
Q psy6859         236 AKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       236 ~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      . |...|.+++|+|+.-+|+.+-
T Consensus       231 ~-a~~~v~sl~fspnrywL~~at  252 (315)
T KOG0279|consen  231 E-AFDIVNSLCFSPNRYWLCAAT  252 (315)
T ss_pred             c-CCCeEeeEEecCCceeEeecc
Confidence            4 788999999999987777654

>KOG0286|consensus

Probab=100.00  E-value=3.6e-40  Score=228.86  Aligned_cols=247  Identities=14%  Similarity=0.159  Sum_probs=209.8

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-   78 (261)
                      ||.+.|.++.|++ .++|++++.||.+.|||.-+.  .....++-....|..++|+|.+++++.|+.|+...||++.+. 
T Consensus        53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d  130 (343)
T KOG0286|consen   53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRD  130 (343)
T ss_pred             ccccceeeeEecCCcCeEEeeccCCeEEEEEcccc--cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccc
Confidence            8999999999999 899999999999999999886  455556666789999999999999999999999999999854 


Q ss_pred             -----ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC-CCCceE
Q psy6859          79 -----DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG-DAIPTA  152 (261)
Q Consensus        79 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  152 (261)
                           +..+++..+..-..++.+.. ...+++.    +.|.+..+||+++++.+..+..  |...|.++++.| ++..  
T Consensus       131 ~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~----SGD~TCalWDie~g~~~~~f~G--H~gDV~slsl~p~~~nt--  201 (343)
T KOG0286|consen  131 AEGNVRVSRELAGHTGYLSCCRFLD-DNHILTG----SGDMTCALWDIETGQQTQVFHG--HTGDVMSLSLSPSDGNT--  201 (343)
T ss_pred             ccccceeeeeecCccceeEEEEEcC-CCceEec----CCCceEEEEEcccceEEEEecC--CcccEEEEecCCCCCCe--
Confidence                 23445556666666666655 4556565    9999999999999998888876  556789999999 6654  


Q ss_pred             EEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccc----ccC----------
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQE----FKF----------  218 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~----------  218 (261)
                      +++|+-|+..++||+| .+..++.|. +|+..|++++|.|+|.-+++|+.|++.++||++...    |+.          
T Consensus       202 FvSg~cD~~aklWD~R-~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv  279 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVR-SGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV  279 (343)
T ss_pred             EEecccccceeeeecc-CcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence            8999999999999999 899999998 999999999999999999999999999999998742    111          


Q ss_pred             ---------------CeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         219 ---------------PKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       219 ---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                                     -.+..|+.-.++.+..+.+|++.|.++..+|||..|++||+|
T Consensus       280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD  336 (343)
T KOG0286|consen  280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD  336 (343)
T ss_pred             EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchh
Confidence                           022346666677788899999999999999999999999998

>KOG0265|consensus

Probab=100.00  E-value=1.2e-40  Score=231.96  Aligned_cols=250  Identities=12%  Similarity=0.183  Sum_probs=215.0

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||++.|+.+.|+| |.+||+|+.|..|.+|++... .+....+++|.++|..+.|.+|++.+++++.|.+++.||+++|+
T Consensus        45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~  123 (338)
T KOG0265|consen   45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK  123 (338)
T ss_pred             CCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence            7999999999999 999999999999999997753 26677888999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .++.++.+..-+..+....-+..   ...+++.|+++++||+++.+.++.++.   ...+.++.|..+...  +.+|+-|
T Consensus       124 ~~rk~k~h~~~vNs~~p~rrg~~---lv~SgsdD~t~kl~D~R~k~~~~t~~~---kyqltAv~f~d~s~q--v~sggId  195 (338)
T KOG0265|consen  124 RIRKHKGHTSFVNSLDPSRRGPQ---LVCSGSDDGTLKLWDIRKKEAIKTFEN---KYQLTAVGFKDTSDQ--VISGGID  195 (338)
T ss_pred             eeehhccccceeeecCccccCCe---EEEecCCCceEEEEeecccchhhcccc---ceeEEEEEecccccc--eeecccc
Confidence            99999888766655553333332   234679999999999999988888764   347899999988876  8899999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC--------------------
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP--------------------  219 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------------------  219 (261)
                      +.|++||++ .+..+..+. +|..+|+.+..+|+|.++.+-+.|.++++||++.-.....                    
T Consensus       196 n~ikvWd~r-~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  196 NDIKVWDLR-KNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             Cceeeeccc-cCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence            999999999 888999998 9999999999999999999999999999999875311110                    


Q ss_pred             ---------------eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         220 ---------------KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       220 ---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                     ..+.|+......+..+.+|.+.|+.++|+|...+|.+++.|+
T Consensus       274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk  330 (338)
T KOG0265|consen  274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK  330 (338)
T ss_pred             ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence                           124466667788899999999999999999999999999985

>KOG0263|consensus

Probab=100.00  E-value=3.4e-41  Score=261.31  Aligned_cols=233  Identities=15%  Similarity=0.284  Sum_probs=212.7

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCC-----------------------------ceeeeEEeeccccceeEEE
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEE-----------------------------GIEFVKHFRSHLGVIHSIC   53 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~   53 (261)
                      ..++|..|++ ...||.|-.|..|++|.+...                             .....+++.+|.++|....
T Consensus       379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s  458 (707)
T KOG0263|consen  379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS  458 (707)
T ss_pred             CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence            4689999999 889999999999999988731                             0122345789999999999


Q ss_pred             EeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec
Q psy6859          54 TNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD  133 (261)
Q Consensus        54 ~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~  133 (261)
                      |+|+.++|++++.|+++|+|.+.+...+-.++.|..|+..+.+.|.|-+++++    +.|++-++|......+++.+..+
T Consensus       459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFata----s~D~tArLWs~d~~~PlRifagh  534 (707)
T KOG0263|consen  459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATA----SHDQTARLWSTDHNKPLRIFAGH  534 (707)
T ss_pred             ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEec----CCCceeeeeecccCCchhhhccc
Confidence            99999999999999999999999999999999999999999999998888777    99999999999999898888875


Q ss_pred             CCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         134 FTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .  ..+.|+.|+|+..+  +++|+.|.++++||.. ++..++.|. +|.++|++++|+|+|++|++|+.||.|++||+. 
T Consensus       535 l--sDV~cv~FHPNs~Y--~aTGSsD~tVRlWDv~-~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~-  607 (707)
T KOG0263|consen  535 L--SDVDCVSFHPNSNY--VATGSSDRTVRLWDVS-TGNSVRIFT-GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA-  607 (707)
T ss_pred             c--cccceEEECCcccc--cccCCCCceEEEEEcC-CCcEEEEec-CCCCceEEEEEcCCCceEeecccCCcEEEEEcC-
Confidence            4  46889999999987  9999999999999999 999999998 999999999999999999999999999999995 


Q ss_pred             ccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         214 QEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                    .++.+..+.+|++.|.++.||.||..||+||.|+
T Consensus       608 --------------~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn  641 (707)
T KOG0263|consen  608 --------------NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN  641 (707)
T ss_pred             --------------CCcchhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence                          4788999999999999999999999999999884

>KOG0315|consensus

Probab=100.00  E-value=1e-39  Score=221.93  Aligned_cols=233  Identities=14%  Similarity=0.266  Sum_probs=201.6

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      +.|+.+...| +..||+++. ..||+||+.+.+..++.++.+|+..|+.+.|..+|+.+++|+.||+++|||++...+.+
T Consensus        41 sqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR  119 (311)
T KOG0315|consen   41 SQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR  119 (311)
T ss_pred             cceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence            5799999999 677777665 79999999997767999999999999999999999999999999999999999987777


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeE
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV  162 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  162 (261)
                      .++.. .++..+.++|+...++++    ..+|.|++||+....+...+... ....+.++...|++.+  ++++...|+.
T Consensus       120 ~~~~~-spVn~vvlhpnQteLis~----dqsg~irvWDl~~~~c~~~liPe-~~~~i~sl~v~~dgsm--l~a~nnkG~c  191 (311)
T KOG0315|consen  120 NYQHN-SPVNTVVLHPNQTELISG----DQSGNIRVWDLGENSCTHELIPE-DDTSIQSLTVMPDGSM--LAAANNKGNC  191 (311)
T ss_pred             hccCC-CCcceEEecCCcceEEee----cCCCcEEEEEccCCccccccCCC-CCcceeeEEEcCCCcE--EEEecCCccE
Confidence            77755 788899999988877776    99999999999988665555432 3458899999999986  7777889999


Q ss_pred             EEEEccCCC------ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         163 HIYDCKGNG------TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       163 ~i~d~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      ++|++- ..      +++..++ .|+..+..+.+|||+++||+++.|.+++||+.++.              -+....++
T Consensus       192 yvW~l~-~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--------------~kle~~l~  255 (311)
T KOG0315|consen  192 YVWRLL-NHQTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--------------FKLELVLT  255 (311)
T ss_pred             EEEEcc-CCCccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEEecCCc--------------eeeEEEee
Confidence            999986 32      4666777 89999999999999999999999999999998642              24556778


Q ss_pred             CCccceeeeeECCCCceEEEeecCC
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +|..+++.++||.||+||++|+.|+
T Consensus       256 gh~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  256 GHQRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             cCCceEEeeeeccCccEEEecCCCC
Confidence            9999999999999999999999985

>KOG0263|consensus

Probab=100.00  E-value=2.5e-40  Score=256.52  Aligned_cols=245  Identities=14%  Similarity=0.212  Sum_probs=213.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.++|..+.|+| .++|++++.|+++|+|.+.+.  ..+..+++|..+|..+.|+|-|-|+||++.|++.++|.....+
T Consensus       449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~  526 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK  526 (707)
T ss_pred             cCCCceeeeeecccccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence            8999999999999 899999999999999999988  8888999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      +.+.+..+...+.++.++|+..++++.    +.|.+|++||+.++..++.+.+  |..+|.+++|+|++.+  +++|+.|
T Consensus       527 PlRifaghlsDV~cv~FHPNs~Y~aTG----SsD~tVRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~--LaSg~ed  598 (707)
T KOG0263|consen  527 PLRIFAGHLSDVDCVSFHPNSNYVATG----SSDRTVRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRY--LASGDED  598 (707)
T ss_pred             chhhhcccccccceEEECCcccccccC----CCCceEEEEEcCCCcEEEEecC--CCCceEEEEEcCCCce--EeecccC
Confidence            999999999999999999999888776    9999999999999999999987  5568999999999987  9999999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC-------Ceeeee--eccccc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF-------PKCVHF--ESKLDT  230 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~--~~~~~~  230 (261)
                      +.|.+||+. .++++..+. +|.+.|.++.|+.+|..||+|+.|.+|++||+..-....       ......  ...+.-
T Consensus       599 ~~I~iWDl~-~~~~v~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (707)
T KOG0263|consen  599 GLIKIWDLA-NGSLVKQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSL  676 (707)
T ss_pred             CcEEEEEcC-CCcchhhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcc
Confidence            999999999 899999998 999999999999999999999999999999986432210       000000  002233


Q ss_pred             ceeecCCCccceeeeeECCCCceEEEe
Q psy6859         231 DLFEFAKNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       231 ~~~~~~~~~~~v~~~~~s~~~~~l~s~  257 (261)
                      .+..+.....+|..+.|...+-.|+.|
T Consensus       677 llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  677 LLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             eeeeeeecCceEEEEEEeccceeEEec
Confidence            556666667799999999876556555

>KOG0279|consensus

Probab=100.00  E-value=1.8e-39  Score=223.92  Aligned_cols=233  Identities=16%  Similarity=0.209  Sum_probs=192.2

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||...|..++.++ +++.++++.|+++++||+.++  +..+.|.+|...|.+++|++|++.+++|+.|++|++|++... 
T Consensus        61 GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-  137 (315)
T KOG0279|consen   61 GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-  137 (315)
T ss_pred             ccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-
Confidence            7999999999999 999999999999999999998  889999999999999999999999999999999999998544 


Q ss_pred             eeeeeecc--CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          80 MINMIKLD--FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        80 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      +..++...  ..-+.++.++|.....  ..++++.|++|++||+++.+....+..  +...+..+.++||+.  +.++|+
T Consensus       138 ck~t~~~~~~~~WVscvrfsP~~~~p--~Ivs~s~DktvKvWnl~~~~l~~~~~g--h~~~v~t~~vSpDGs--lcasGg  211 (315)
T KOG0279|consen  138 CKYTIHEDSHREWVSCVRFSPNESNP--IIVSASWDKTVKVWNLRNCQLRTTFIG--HSGYVNTVTVSPDGS--LCASGG  211 (315)
T ss_pred             EEEEEecCCCcCcEEEEEEcCCCCCc--EEEEccCCceEEEEccCCcchhhcccc--ccccEEEEEECCCCC--EEecCC
Confidence            44444333  4456777777764222  223559999999999999988887776  455889999999996  489999


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC-
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA-  236 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-  236 (261)
                      .||.+.+||++ .++.+..+  .+...|.+++|+|+...|+.+... .|+|||++++               ..+..++ 
T Consensus       212 kdg~~~LwdL~-~~k~lysl--~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~---------------~~v~~l~~  272 (315)
T KOG0279|consen  212 KDGEAMLWDLN-EGKNLYSL--EAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESK---------------AVVEELKL  272 (315)
T ss_pred             CCceEEEEEcc-CCceeEec--cCCCeEeeEEecCCceeEeeccCC-ceEEEeccch---------------hhhhhccc
Confidence            99999999999 88889998  699999999999998888776644 4999999653               2332222 


Q ss_pred             --------CCccceeeeeECCCCceEEEeecCC
Q psy6859         237 --------KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 --------~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                              .-.....+++|++||..|++|-.|+
T Consensus       273 d~~g~s~~~~~~~clslaws~dG~tLf~g~td~  305 (315)
T KOG0279|consen  273 DGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN  305 (315)
T ss_pred             cccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence                    1233457899999999999998775

>KOG0273|consensus

Probab=100.00  E-value=8.6e-40  Score=240.21  Aligned_cols=229  Identities=18%  Similarity=0.297  Sum_probs=204.7

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      +..|++++|+. |..||+|+.||.+++|+...   ..+.++..|.++|.++.|+..|+||++++.|+++.+||..+++..
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~  311 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK  311 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence            36799999998 99999999999999999876   578889999999999999999999999999999999999999999


Q ss_pred             eeeeccCccee-EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          82 NMIKLDFTPLT-VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      +.+.++..+.. +.+..  ...+++.    +.|+.|+++.+....++.++..  |...|.++.|+|.+.  +++++++|+
T Consensus       312 q~f~~~s~~~lDVdW~~--~~~F~ts----~td~~i~V~kv~~~~P~~t~~G--H~g~V~alk~n~tg~--LLaS~SdD~  381 (524)
T KOG0273|consen  312 QQFEFHSAPALDVDWQS--NDEFATS----STDGCIHVCKVGEDRPVKTFIG--HHGEVNALKWNPTGS--LLASCSDDG  381 (524)
T ss_pred             EeeeeccCCccceEEec--CceEeec----CCCceEEEEEecCCCcceeeec--ccCceEEEEECCCCc--eEEEecCCC
Confidence            99998887733 44433  2334444    8999999999999999999987  556899999999996  599999999


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCC---------CEEEEEcCCCeEEEeecccccccCCeeeeeecccccc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY---------QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTD  231 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  231 (261)
                      +++||.+. .......+. .|...|..+.|+|+|         ..|++++.|++|++||+               ..+.+
T Consensus       382 TlkiWs~~-~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv---------------~~gv~  444 (524)
T KOG0273|consen  382 TLKIWSMG-QSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV---------------ESGVP  444 (524)
T ss_pred             eeEeeecC-CCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc---------------cCCce
Confidence            99999998 788888998 999999999999975         37899999999999999               45899


Q ss_pred             eeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         232 LFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       232 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +..+..|..+|.+++|||+|++||+|+.||
T Consensus       445 i~~f~kH~~pVysvafS~~g~ylAsGs~dg  474 (524)
T KOG0273|consen  445 IHTLMKHQEPVYSVAFSPNGRYLASGSLDG  474 (524)
T ss_pred             eEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence            999999999999999999999999999986

>KOG0295|consensus

Probab=100.00  E-value=7.5e-40  Score=233.40  Aligned_cols=234  Identities=21%  Similarity=0.331  Sum_probs=214.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-c
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-F   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~   78 (261)
                      ||..+|+.+-|+| -..+++++.|++|++||..++  ++.+.+++|++.+..+.|+..|+++++++.|-.+++||..+ .
T Consensus       106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~  183 (406)
T KOG0295|consen  106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF  183 (406)
T ss_pred             ccccceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH
Confidence            6889999999999 778899999999999999998  77999999999999999999999999999999999999986 5


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ++++.+..+.+.+....+-|.++.++++    +.|.+|+.|++.++.++.++..+  +..+.-++.+.|+.  ++++++.
T Consensus       184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~----srD~tik~We~~tg~cv~t~~~h--~ewvr~v~v~~DGt--i~As~s~  255 (406)
T KOG0295|consen  184 RCIKSLIGHEHGVSSVFFLPLGDHILSC----SRDNTIKAWECDTGYCVKTFPGH--SEWVRMVRVNQDGT--IIASCSN  255 (406)
T ss_pred             HHHHHhcCcccceeeEEEEecCCeeeec----ccccceeEEecccceeEEeccCc--hHhEEEEEecCCee--EEEecCC
Confidence            6777777888889999999999888887    99999999999999999998874  45888999999995  5999999


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCC---------------CCEEEEEcCCCeEEEeecccccccCCeeee
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPI---------------YQVVVSVDKAGILEYWSGYKQEFKFPKCVH  223 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  223 (261)
                      |.++++|-+. +.++...+. .|+.+|.+++|.|.               ++++.+++.|++|++||+            
T Consensus       256 dqtl~vW~~~-t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv------------  321 (406)
T KOG0295|consen  256 DQTLRVWVVA-TKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV------------  321 (406)
T ss_pred             CceEEEEEec-cchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec------------
Confidence            9999999998 888888888 99999999999874               359999999999999999            


Q ss_pred             eecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         224 FESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                         .++.++.++.+|..+|.+++|+|.|+||+++.+|+
T Consensus       322 ---~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk  356 (406)
T KOG0295|consen  322 ---STGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK  356 (406)
T ss_pred             ---cCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC
Confidence               45899999999999999999999999999999986

>KOG0295|consensus

Probab=100.00  E-value=3.4e-39  Score=230.06  Aligned_cols=236  Identities=16%  Similarity=0.202  Sum_probs=210.0

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||++.|..|+|+. |.++++++.|-.+++||.++. .++++.+.+|...|.+++|-|.|.+++++++|.+|+.|++.++-
T Consensus       148 GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~  226 (406)
T KOG0295|consen  148 GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY  226 (406)
T ss_pred             ccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce
Confidence            8999999999999 999999999999999999873 47788888999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCc---------
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIP---------  150 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  150 (261)
                      ++.++..+..-+..+.+..+|..++++    +.|.++++|-+.++++...+..+.++  +.|++|.|...+         
T Consensus       227 cv~t~~~h~ewvr~v~v~~DGti~As~----s~dqtl~vW~~~t~~~k~~lR~hEh~--vEci~wap~~~~~~i~~at~~  300 (406)
T KOG0295|consen  227 CVKTFPGHSEWVRMVRVNQDGTIIASC----SNDQTLRVWVVATKQCKAELREHEHP--VECIAWAPESSYPSISEATGS  300 (406)
T ss_pred             eEEeccCchHhEEEEEecCCeeEEEec----CCCceEEEEEeccchhhhhhhccccc--eEEEEecccccCcchhhccCC
Confidence            999999887767777777777665555    99999999999999888888876654  556666443211         


Q ss_pred             ----eEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeec
Q psy6859         151 ----TAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFES  226 (261)
Q Consensus       151 ----~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  226 (261)
                          .++.+++.|++|++||+. ++.++.++. +|.+.|.+++|+|.|+||+++.+|+++++||++              
T Consensus       301 ~~~~~~l~s~SrDktIk~wdv~-tg~cL~tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~--------------  364 (406)
T KOG0295|consen  301 TNGGQVLGSGSRDKTIKIWDVS-TGMCLFTLV-GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK--------------  364 (406)
T ss_pred             CCCccEEEeecccceEEEEecc-CCeEEEEEe-cccceeeeeEEcCCCeEEEEEecCCcEEEEEec--------------
Confidence                258899999999999999 999999998 999999999999999999999999999999994              


Q ss_pred             ccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         227 KLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       227 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                       ..++...+..|..-|+++.|+.+-.++++|+-|
T Consensus       365 -~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd  397 (406)
T KOG0295|consen  365 -NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD  397 (406)
T ss_pred             -cceeeeccCCCcceeEEEecCCCCceEEecccc
Confidence             588999999999999999999999999999876

>KOG0285|consensus

Probab=100.00  E-value=8.5e-39  Score=227.99  Aligned_cols=232  Identities=17%  Similarity=0.259  Sum_probs=209.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.+.|.|+++.| ++++++|+.|++|+|||+.++  ++..++.+|-..|..+++++--.|+++++.|+.|+.||+...+
T Consensus       149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk  226 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK  226 (460)
T ss_pred             hccceEEEEeeCCCceeEEecCCCceeEEEEcccC--eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence            7999999999999 899999999999999999998  8899999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .++.+..+...+.++.++|.-+.++++    +.|.++++||+++...+..+..+  ...|..+.+.|....  +++|+.|
T Consensus       227 vIR~YhGHlS~V~~L~lhPTldvl~t~----grDst~RvWDiRtr~~V~~l~GH--~~~V~~V~~~~~dpq--vit~S~D  298 (460)
T KOG0285|consen  227 VIRHYHGHLSGVYCLDLHPTLDVLVTG----GRDSTIRVWDIRTRASVHVLSGH--TNPVASVMCQPTDPQ--VITGSHD  298 (460)
T ss_pred             hHHHhccccceeEEEeccccceeEEec----CCcceEEEeeecccceEEEecCC--CCcceeEEeecCCCc--eEEecCC
Confidence            999999888888888888877766665    99999999999999988888875  457888888887766  9999999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      ++|++||++ .++...++. .|+..+.+++.+|....+|+++.|. |+-|++..               +..+..+.+|.
T Consensus       299 ~tvrlWDl~-agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~---------------g~f~~nlsgh~  360 (460)
T KOG0285|consen  299 STVRLWDLR-AGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPE---------------GEFLQNLSGHN  360 (460)
T ss_pred             ceEEEeeec-cCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCc---------------cchhhcccccc
Confidence            999999999 888888887 8999999999999999999999886 99999954               67778899999


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .-|++++.+.|| ++++|++.|
T Consensus       361 ~iintl~~nsD~-v~~~G~dng  381 (460)
T KOG0285|consen  361 AIINTLSVNSDG-VLVSGGDNG  381 (460)
T ss_pred             ceeeeeeeccCc-eEEEcCCce
Confidence            999999999886 666777654

>KOG0284|consensus

Probab=100.00  E-value=3.2e-39  Score=233.35  Aligned_cols=233  Identities=18%  Similarity=0.260  Sum_probs=204.2

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccc-cceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL-GVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      .|.++|+++.|++ +.++++|+.+|.|++|+..-   ..++.++.|. ..|++++|+|+...+++|+.||+|+|||....
T Consensus       136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm---nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~  212 (464)
T KOG0284|consen  136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM---NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP  212 (464)
T ss_pred             hhcccceeEEEccCCCEEEEcCCCceEEecccch---hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence            3899999999999 99999999999999999765   3455555555 89999999999999999999999999999988


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      +....+..+.-.+.++.++|....+++.    +.|..|++||.++++++.++..  +...|..+.|+|++.+  +++++.
T Consensus       213 kee~vL~GHgwdVksvdWHP~kgLiasg----skDnlVKlWDprSg~cl~tlh~--HKntVl~~~f~~n~N~--Llt~sk  284 (464)
T KOG0284|consen  213 KEERVLRGHGWDVKSVDWHPTKGLIASG----SKDNLVKLWDPRSGSCLATLHG--HKNTVLAVKFNPNGNW--LLTGSK  284 (464)
T ss_pred             chhheeccCCCCcceeccCCccceeEEc----cCCceeEeecCCCcchhhhhhh--ccceEEEEEEcCCCCe--eEEccC
Confidence            8888888888888888999888777666    9999999999999999888765  4568999999999976  899999


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec-C
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF-A  236 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~  236 (261)
                      |..+++||++ +-+.++.++ +|+..++++.|+|-.. +|.+|+.||.|..|.+.               ..+++..+ .
T Consensus       285 D~~~kv~DiR-~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~---------------~~~p~~~i~~  347 (464)
T KOG0284|consen  285 DQSCKVFDIR-TMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG---------------LEEPLGEIPP  347 (464)
T ss_pred             CceEEEEehh-HhHHHHHhh-cchhhheeeccccccccceeeccCCCceEEEecc---------------ccccccCCCc
Confidence            9999999999 889999998 9999999999999654 78999999999999984               23444433 4


Q ss_pred             CCccceeeeeECCCCceEEEeecCC
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +|...|++++|+|-|.+|++|+.|+
T Consensus       348 AHd~~iwsl~~hPlGhil~tgsnd~  372 (464)
T KOG0284|consen  348 AHDGEIWSLAYHPLGHILATGSNDR  372 (464)
T ss_pred             ccccceeeeeccccceeEeecCCCc
Confidence            6999999999999999999999884

>KOG0282|consensus

Probab=100.00  E-value=9.5e-39  Score=235.33  Aligned_cols=235  Identities=16%  Similarity=0.271  Sum_probs=199.9

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ||+..|+++.|.|  +.+|++++.|+.|+||++... ..+++++.+|..+|..++|+++|..+++++.|+.+++||+++|
T Consensus       212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG  290 (503)
T KOG0282|consen  212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG  290 (503)
T ss_pred             CCccccchhhhccceeeEEEecCCCceEEEEEEecC-cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence            8999999999999  789999999999999999872 2899999999999999999999999999999999999999999


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      +++..+..... ..++.+.|++..++.   .|+.|+.|+.||+++++.++.+..  +-..+..+.|-+++.+  +++.++
T Consensus       291 ~~~~~f~~~~~-~~cvkf~pd~~n~fl---~G~sd~ki~~wDiRs~kvvqeYd~--hLg~i~~i~F~~~g~r--FissSD  362 (503)
T KOG0282|consen  291 QVLSRFHLDKV-PTCVKFHPDNQNIFL---VGGSDKKIRQWDIRSGKVVQEYDR--HLGAILDITFVDEGRR--FISSSD  362 (503)
T ss_pred             eEEEEEecCCC-ceeeecCCCCCcEEE---EecCCCcEEEEeccchHHHHHHHh--hhhheeeeEEccCCce--Eeeecc
Confidence            99999986654 567788887743332   358999999999999998887765  4457899999999988  889999


Q ss_pred             CCeEEEEEccCCCcccee----------------------------------------------eccCcc--cCeEEEEE
Q psy6859         159 SSHVHIYDCKGNGTPLHV----------------------------------------------LDRLHT--KPVVLIKF  190 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~----------------------------------------------~~~~~~--~~v~~~~~  190 (261)
                      |+.++||+.+ ...+++.                                              ++ +|.  +--..+.|
T Consensus       363 dks~riWe~~-~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe-Gh~vaGys~~v~f  440 (503)
T KOG0282|consen  363 DKSVRIWENR-IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE-GHSVAGYSCQVDF  440 (503)
T ss_pred             CccEEEEEcC-CCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc-ceeccCceeeEEE
Confidence            9999999987 3322211                                              11 222  22356899


Q ss_pred             cCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCC-CceEEEeecCC
Q psy6859         191 NPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPD-GNKFVTISMDR  261 (261)
Q Consensus       191 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~Dg  261 (261)
                      ||||++|++|+.||.+.+||.               ++.+.+..++.|..++..+.|+|. ...+|+||+||
T Consensus       441 SpDG~~l~SGdsdG~v~~wdw---------------kt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G  497 (503)
T KOG0282|consen  441 SPDGRTLCSGDSDGKVNFWDW---------------KTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG  497 (503)
T ss_pred             cCCCCeEEeecCCccEEEeec---------------hhhhhhhccccCCcceEEEEecCCCcceeEecccCc
Confidence            999999999999999999999               557888999999999999999995 46899999987

>KOG0266|consensus

Probab=100.00  E-value=5.9e-37  Score=241.07  Aligned_cols=235  Identities=14%  Similarity=0.252  Sum_probs=208.7

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||...|++++|+| +.++++++.|++|+|||+... ...++++++|...|++++|+|+++++++|+.|++|++||+.+++
T Consensus       201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             ccccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence            6999999999999 889999999999999999432 27889999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc--eeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND--MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ++..++.+..++..+.+.+++..+++.    +.|+.|++||+.++.  +...+.....+..+.++.|+|++.+  ++++.
T Consensus       280 ~~~~l~~hs~~is~~~f~~d~~~l~s~----s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~--ll~~~  353 (456)
T KOG0266|consen  280 CVRKLKGHSDGISGLAFSPDGNLLVSA----SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY--LLSAS  353 (456)
T ss_pred             EEEeeeccCCceEEEEECCCCCEEEEc----CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE--EEEec
Confidence            999999999999999999999988877    889999999999998  4566655444336899999999987  88888


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccC---eEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKP---VVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                      .|+.+++||++ .+..+..+. +|...   +.+...++.++++++|+.|+.|.+||+.               ++..+..
T Consensus       354 ~d~~~~~w~l~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~---------------s~~~~~~  416 (456)
T KOG0266|consen  354 LDRTLKLWDLR-SGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS---------------SGGILQR  416 (456)
T ss_pred             CCCeEEEEEcc-CCcceeeec-ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC---------------ccchhhh
Confidence            99999999999 888888887 77664   4445667899999999999999999994               3677888


Q ss_pred             cCCC-ccceeeeeECCCCceEEEeec
Q psy6859         235 FAKN-KTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       235 ~~~~-~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      +.+| ...+..+.++|..+++++++.
T Consensus       417 l~~h~~~~~~~~~~~~~~~~~~s~s~  442 (456)
T KOG0266|consen  417 LEGHSKAAVSDLSSHPTENLIASSSF  442 (456)
T ss_pred             hcCCCCCceeccccCCCcCeeeecCc
Confidence            8999 899999999999999999984

>KOG0284|consensus

Probab=100.00  E-value=5.3e-39  Score=232.24  Aligned_cols=230  Identities=17%  Similarity=0.248  Sum_probs=201.2

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      -+|..|.|.| |+.|++|+..|...+|+...-  .....++.|.++|+++.|++++.++++|+.+|.|++|+..- ..++
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk  173 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVK  173 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCcee--eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhH
Confidence            4789999999 899999999999999998654  55566789999999999999999999999999999999754 4444


Q ss_pred             eeecc-CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          83 MIKLD-FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        83 ~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      .++.+ ...+..+.+++....++++    +.|++|+|||....+....+..  +.-.+.+++|+|...  ++++++.|+.
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~----SdDg~ikiWdf~~~kee~vL~G--HgwdVksvdWHP~kg--LiasgskDnl  245 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTC----SDDGTIKIWDFRMPKEERVLRG--HGWDVKSVDWHPTKG--LIASGSKDNL  245 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEe----cCCCeEEEEeccCCchhheecc--CCCCcceeccCCccc--eeEEccCCce
Confidence            44433 3678889999988777777    9999999999988877777765  445789999999885  4999999999


Q ss_pred             EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccc
Q psy6859         162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTY  241 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (261)
                      |++||.+ ++.++.++. .|+..|..+.|+|++++|++++.|..++++|++               +-+.++.+++|+..
T Consensus       246 VKlWDpr-Sg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR---------------~mkEl~~~r~Hkkd  308 (464)
T KOG0284|consen  246 VKLWDPR-SGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR---------------TMKELFTYRGHKKD  308 (464)
T ss_pred             eEeecCC-Ccchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehh---------------HhHHHHHhhcchhh
Confidence            9999999 999999998 999999999999999999999999999999995               36778899999999


Q ss_pred             eeeeeECC-CCceEEEeecCC
Q psy6859         242 PSGLSFSP-DGNKFVTISMDR  261 (261)
Q Consensus       242 v~~~~~s~-~~~~l~s~~~Dg  261 (261)
                      |++++|+| ...+|.+|+.||
T Consensus       309 v~~~~WhP~~~~lftsgg~Dg  329 (464)
T KOG0284|consen  309 VTSLTWHPLNESLFTSGGSDG  329 (464)
T ss_pred             heeeccccccccceeeccCCC
Confidence            99999999 567888999886

>KOG0645|consensus

Probab=100.00  E-value=5.2e-36  Score=206.18  Aligned_cols=236  Identities=15%  Similarity=0.235  Sum_probs=194.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-   78 (261)
                      ||+..|++++|+| +++|++||.|.++.||.-..+..+++.++.+|...|.+++|+++|++||+|++|+.|-+|.+..+ 
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd  138 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD  138 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence            6999999999999 99999999999999999888888999999999999999999999999999999999999998754 


Q ss_pred             --ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC-CC--ceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859          79 --DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK-GN--DMINMIKLDFTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
                        ++...++.|.+.+..+.++|....++++    +.|++|++|+-. ..  ++.+++..  +...+.+++|++.+..  +
T Consensus       139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~----SYDnTIk~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~r--l  210 (312)
T KOG0645|consen  139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSC----SYDNTIKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSR--L  210 (312)
T ss_pred             cEEEEeeeccccccccEEEEcCCcceeEEe----ccCCeEEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCce--E
Confidence              4666777788888888999988877776    999999999876 33  45566655  4559999999999976  9


Q ss_pred             EEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859         154 VSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF  233 (261)
Q Consensus       154 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  233 (261)
                      +++++|++++||-.. ..     +...|..++..+.|.  ...|++++.|+.|++|.-...    |..     .+-+.+.
T Consensus       211 ~s~sdD~tv~Iw~~~-~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~----~d~-----p~~~l~~  273 (312)
T KOG0645|consen  211 VSCSDDGTVSIWRLY-TD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS----PDE-----PSWNLLA  273 (312)
T ss_pred             EEecCCcceEeeeec-cC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCC----CCC-----chHHHHH
Confidence            999999999999865 22     222578889999998  447999999999999975421    100     1111222


Q ss_pred             -ecCCCccceeeeeECCC-CceEEEeecCC
Q psy6859         234 -EFAKNKTYPSGLSFSPD-GNKFVTISMDR  261 (261)
Q Consensus       234 -~~~~~~~~v~~~~~s~~-~~~l~s~~~Dg  261 (261)
                       .-..|...|++++|+|. .+.|++||+||
T Consensus       274 ~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG  303 (312)
T KOG0645|consen  274 KKEGAHEVDVNSVQWNPKVSNRLASGGDDG  303 (312)
T ss_pred             hhhcccccccceEEEcCCCCCceeecCCCc
Confidence             23459999999999994 68899999997

>KOG0291|consensus

Probab=100.00  E-value=2.1e-36  Score=234.09  Aligned_cols=248  Identities=13%  Similarity=0.181  Sum_probs=201.0

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||...+++++++| |+++|+|+.||.|+|||...+  -+..+|..|++.|+.+.|+..++.+++++.||+|+.||+...+
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr  425 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG--FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR  425 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCc--eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence            7999999999999 999999999999999999987  8999999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCc-ceeEEEEeecCCceeeeeeecCCCC-eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          80 MINMIKLDFT-PLTVECIHYLGDAIPTAAVSDQDSS-RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        80 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ..+++..+.. ...++.+.+.|..+.++    +.|. .|.+|++++++.+..+.+|  +.+|.+++|+|.+..  +++++
T Consensus       426 NfRTft~P~p~QfscvavD~sGelV~AG----~~d~F~IfvWS~qTGqllDiLsGH--EgPVs~l~f~~~~~~--LaS~S  497 (893)
T KOG0291|consen  426 NFRTFTSPEPIQFSCVAVDPSGELVCAG----AQDSFEIFVWSVQTGQLLDILSGH--EGPVSGLSFSPDGSL--LASGS  497 (893)
T ss_pred             eeeeecCCCceeeeEEEEcCCCCEEEee----ccceEEEEEEEeecCeeeehhcCC--CCcceeeEEccccCe--EEecc
Confidence            8888875543 34455556667665554    5554 6999999999999999875  557899999999974  99999


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccc-----cce
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLD-----TDL  232 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~  232 (261)
                      .|.+|++||+-.....+.++  .+...+..++|+|+|+.|+++..||.|.+||...+.......-..+...+     ...
T Consensus       498 WDkTVRiW~if~s~~~vEtl--~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~t  575 (893)
T KOG0291|consen  498 WDKTVRIWDIFSSSGTVETL--EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRIT  575 (893)
T ss_pred             ccceEEEEEeeccCceeeeE--eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceee
Confidence            99999999998455677777  47888999999999999999999999999998764322111111111111     111


Q ss_pred             eecCCCccceeeeeECCCCceEEEeecC
Q psy6859         233 FEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       233 ~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      ..-.......+.+++|+||++|++||..
T Consensus       576 a~~sa~~K~Ftti~ySaDG~~IlAgG~s  603 (893)
T KOG0291|consen  576 AENSAKGKTFTTICYSADGKCILAGGES  603 (893)
T ss_pred             hhhcccCCceEEEEEcCCCCEEEecCCc
Confidence            1222234678999999999999999875

>KOG0291|consensus

Probab=100.00  E-value=2.9e-36  Score=233.34  Aligned_cols=232  Identities=18%  Similarity=0.290  Sum_probs=203.4

Q ss_pred             CCeEEEEEcC-CCeEEEecCC-CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           4 SPITHVVVTK-TDFVITASND-GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      .+|..++|+. |+.||.|+.. |.+.||+....  ..+...++|-..+++++++|||+++++|+.||.|++||..++-+.
T Consensus       308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~  385 (893)
T KOG0291|consen  308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF  385 (893)
T ss_pred             ceeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence            5788999998 9999988765 89999999987  778888999999999999999999999999999999999999999


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC-
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS-  160 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-  160 (261)
                      .++..|...+..+.+...++.+++.    +.||+|+.||+...+..+++..+ .|....|++..|.+..  +.+|+.|. 
T Consensus       386 vTFteHts~Vt~v~f~~~g~~llss----SLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGel--V~AG~~d~F  458 (893)
T KOG0291|consen  386 VTFTEHTSGVTAVQFTARGNVLLSS----SLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGEL--VCAGAQDSF  458 (893)
T ss_pred             EEeccCCCceEEEEEEecCCEEEEe----ecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCE--EEeeccceE
Confidence            9999999999999999999887777    99999999999999988888876 4667889999999862  55555554 


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCcc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT  240 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (261)
                      .|++|+++ +|+++..+. +|++||.+++|+|++..|++++.|.+|++||+-..              ...+.++. +..
T Consensus       459 ~IfvWS~q-TGqllDiLs-GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s--------------~~~vEtl~-i~s  521 (893)
T KOG0291|consen  459 EIFVWSVQ-TGQLLDILS-GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS--------------SGTVETLE-IRS  521 (893)
T ss_pred             EEEEEEee-cCeeeehhc-CCCCcceeeEEccccCeEEeccccceEEEEEeecc--------------CceeeeEe-ecc
Confidence            49999999 999999998 99999999999999999999999999999998431              12233333 567


Q ss_pred             ceeeeeECCCCceEEEeecCC
Q psy6859         241 YPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       241 ~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+..++|+|||+.||++.-||
T Consensus       522 dvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  522 DVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             ceeEEEEcCCCCeEEEEEecc
Confidence            889999999999999998886

>KOG0643|consensus

Probab=100.00  E-value=1.1e-36  Score=209.15  Aligned_cols=252  Identities=15%  Similarity=0.229  Sum_probs=206.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||..+++.|.|+. |++|++++.|.+..||-..++  +.+-++.+|++.|.++..+.+.+++++|+.|.++++||+.+|+
T Consensus         8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen    8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             cCccccceEEecCCCcEEEEecCCCCceEEEecCC--ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence            8999999999999 999999999999999988777  8899999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeee-ecCCCCeEEEEEcC-------CCceeeEEeecCCcceEEEEEEeCCCCce
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAV-SDQDSSRVHIYDCK-------GNDMINMIKLDFTPLTVECIHYLGDAIPT  151 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (261)
                      ++..++.+ .++..+.+++.++.++...= .-+..+.|.++|++       ..++...+..  +...+..+-|.|-+.+ 
T Consensus        86 ~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t--~~skit~a~Wg~l~~~-  161 (327)
T KOG0643|consen   86 QLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT--PDSKITSALWGPLGET-  161 (327)
T ss_pred             EEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC--CccceeeeeecccCCE-
Confidence            99998855 45677788888887665410 01345789999998       3344555544  4467888999999886 


Q ss_pred             EEEEecCCCeEEEEEccCCC-ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC------Ce-e--
Q psy6859         152 AAVSDQDSSHVHIYDCKGNG-TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF------PK-C--  221 (261)
Q Consensus       152 ~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------~~-~--  221 (261)
                       +++|.++|.|.+||.+ ++ +.+...+ .|...|+.|+++||..++++++.|.+-++||+.+-....      |- +  
T Consensus       162 -ii~Ghe~G~is~~da~-~g~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa  238 (327)
T KOG0643|consen  162 -IIAGHEDGSISIYDAR-TGKELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA  238 (327)
T ss_pred             -EEEecCCCcEEEEEcc-cCceeeechh-hhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence             9999999999999999 65 5556655 899999999999999999999999999999987632111      00 0  


Q ss_pred             --------------------------eee-----ecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         222 --------------------------VHF-----ESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       222 --------------------------~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                                -.|     +.-..+.+..+++|-++|++++|+|+|+..++|++||
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG  309 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG  309 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence                                      001     1123345667789999999999999999999999997

>KOG0315|consensus

Probab=100.00  E-value=6.3e-36  Score=203.61  Aligned_cols=225  Identities=13%  Similarity=0.173  Sum_probs=193.5

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc--eeeeeeccCccee
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD--MINMIKLDFTPLT   92 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~--~~~~~~~~~~~~~   92 (261)
                      -+|++++.|.+||+|...++  .+.++++...+.|+.+...|+++.|++++. ..||+||++++.  ++.++..+...+.
T Consensus        11 viLvsA~YDhTIRfWqa~tG--~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTG--ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             eEEEeccCcceeeeeehhcC--eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence            47999999999999999998  999999977889999999999999998876 489999999775  6788888888899


Q ss_pred             EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc
Q psy6859          93 VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT  172 (261)
Q Consensus        93 ~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  172 (261)
                      .+.|..+++..++.    +.||+++|||++...+.+.++.   +.+|.++..+|+...  +++|..+|.|++||+. ...
T Consensus        88 aVgF~~dgrWMyTg----seDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQte--Lis~dqsg~irvWDl~-~~~  157 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTG----SEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTE--LISGDQSGNIRVWDLG-ENS  157 (311)
T ss_pred             EEEEeecCeEEEec----CCCceEEEEeccCcccchhccC---CCCcceEEecCCcce--EEeecCCCcEEEEEcc-CCc
Confidence            99999999988776    9999999999999776666663   458899999998876  8999999999999999 665


Q ss_pred             cceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCc
Q psy6859         173 PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGN  252 (261)
Q Consensus       173 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  252 (261)
                      ....+.+....+|.++...|||.+|+.+...|...+|++.+....         ..-+++..++.|.+.+..+.+|||++
T Consensus       158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~---------s~l~P~~k~~ah~~~il~C~lSPd~k  228 (311)
T KOG0315|consen  158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA---------SELEPVHKFQAHNGHILRCLLSPDVK  228 (311)
T ss_pred             cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc---------ccceEhhheecccceEEEEEECCCCc
Confidence            555554356688999999999999999999999999998653211         22456677889999999999999999


Q ss_pred             eEEEeecCC
Q psy6859         253 KFVTISMDR  261 (261)
Q Consensus       253 ~l~s~~~Dg  261 (261)
                      +||++|.|.
T Consensus       229 ~lat~ssdk  237 (311)
T KOG0315|consen  229 YLATCSSDK  237 (311)
T ss_pred             EEEeecCCc
Confidence            999999984

>KOG0266|consensus

Probab=100.00  E-value=1.7e-35  Score=232.86  Aligned_cols=235  Identities=18%  Similarity=0.272  Sum_probs=203.3

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc-cccc
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV-INFD   79 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~-~~~~   79 (261)
                      |...|.++.|++ ++.+++++.|+.+++|+...........+.+|...|.+++|+|+++++++++.|+++++||+ ..+.
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~  237 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR  237 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence            478899999999 99999999999999999966521266777899999999999999999999999999999999 5568


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .++.++.|...+..+.+++.++.++++    +.|++|++||+++++++..+..+.  ..+.+++|++++..  +++++.|
T Consensus       238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sg----s~D~tvriWd~~~~~~~~~l~~hs--~~is~~~f~~d~~~--l~s~s~d  309 (456)
T KOG0266|consen  238 NLKTLKGHSTYVTSVAFSPDGNLLVSG----SDDGTVRIWDVRTGECVRKLKGHS--DGISGLAFSPDGNL--LVSASYD  309 (456)
T ss_pred             EEEEecCCCCceEEEEecCCCCEEEEe----cCCCcEEEEeccCCeEEEeeeccC--CceEEEEECCCCCE--EEEcCCC
Confidence            899999999999999999999777666    999999999999999999998754  47899999999986  7888899


Q ss_pred             CeEEEEEccCCCc--cceeeccCccc--CeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859         160 SHVHIYDCKGNGT--PLHVLDRLHTK--PVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF  235 (261)
Q Consensus       160 ~~i~i~d~~~~~~--~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
                      +.|++||+. ++.  ++..+. .+..  +++.++|+|++.+|+++..|+.+++||+..               +.....+
T Consensus       310 ~~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~---------------~~~~~~~  372 (456)
T KOG0266|consen  310 GTIRVWDLE-TGSKLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS---------------GKSVGTY  372 (456)
T ss_pred             ccEEEEECC-CCceeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC---------------Ccceeee
Confidence            999999999 777  456665 4444  599999999999999999999999999953               6677777


Q ss_pred             CCCccc---eeeeeECCCCceEEEeecCC
Q psy6859         236 AKNKTY---PSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       236 ~~~~~~---v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+|...   +.+...++.++++++|+.|+
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~  401 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDG  401 (456)
T ss_pred             cccCCcceeEecccccCCCCeEEEEeCCc
Confidence            777764   44556688999999999985

>KOG0318|consensus

Probab=100.00  E-value=3.7e-35  Score=218.75  Aligned_cols=235  Identities=17%  Similarity=0.205  Sum_probs=183.5

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee---ccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR---SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      |.+-|+|+.|+| |+.+++++.||++.+||-.++  +.+..+.   +|++.|.+++|+||++.+++++.|.+++|||+.+
T Consensus       189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg--e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~  266 (603)
T KOG0318|consen  189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST  266 (603)
T ss_pred             cccceeeEEECCCCCeEEEecCCccEEEEcCCCc--cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence            788999999999 999999999999999998887  7777777   8999999999999999999999999999999998


Q ss_pred             cceeeeee-------------------------------------------ccCcceeEEEEeecCCceeeeeeecCCCC
Q psy6859          78 FDMINMIK-------------------------------------------LDFTPLTVECIHYLGDAIPTAAVSDQDSS  114 (261)
Q Consensus        78 ~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  114 (261)
                      .++++++.                                           .|...++++.+++++..+++    |+.||
T Consensus       267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S----gsyDG  342 (603)
T KOG0318|consen  267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS----GSYDG  342 (603)
T ss_pred             cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe----eccCc
Confidence            77766653                                           23334455555555554444    49999


Q ss_pred             eEEEEEcCCCcee-----------eEE---------------------------------eecCC---------------
Q psy6859         115 RVHIYDCKGNDMI-----------NMI---------------------------------KLDFT---------------  135 (261)
Q Consensus       115 ~i~i~d~~~~~~~-----------~~~---------------------------------~~~~~---------------  135 (261)
                      .|.-||..++..-           ..+                                 +...+               
T Consensus       343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv  422 (603)
T KOG0318|consen  343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV  422 (603)
T ss_pred             eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence            9999998754321           111                                 00000               


Q ss_pred             --------------------cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCC
Q psy6859         136 --------------------PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPI  193 (261)
Q Consensus       136 --------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~  193 (261)
                                          .....+++.+|++..  ++.|+.|+.|++|.+. ....  ..... .|.++|+.++|+||
T Consensus       423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~--vaVGG~Dgkvhvysl~-g~~l~ee~~~~-~h~a~iT~vaySpd  498 (603)
T KOG0318|consen  423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE--VAVGGQDGKVHVYSLS-GDELKEEAKLL-EHRAAITDVAYSPD  498 (603)
T ss_pred             EecCcEEEEecCCcceeeccccccceEEEcCCCCE--EEEecccceEEEEEec-CCcccceeeee-cccCCceEEEECCC
Confidence                                012356677788765  7889999999999998 4332  22333 79999999999999


Q ss_pred             CCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         194 YQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       194 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      +.+||++...+.+.+||+.+.+              .....+.-|...|.+++|+|+..++|+||-|
T Consensus       499 ~~yla~~Da~rkvv~yd~~s~~--------------~~~~~w~FHtakI~~~aWsP~n~~vATGSlD  551 (603)
T KOG0318|consen  499 GAYLAAGDASRKVVLYDVASRE--------------VKTNRWAFHTAKINCVAWSPNNKLVATGSLD  551 (603)
T ss_pred             CcEEEEeccCCcEEEEEcccCc--------------eecceeeeeeeeEEEEEeCCCceEEEecccc
Confidence            9999999999999999996531              1223344599999999999999999999987

>KOG0296|consensus

Probab=100.00  E-value=1.1e-35  Score=212.31  Aligned_cols=236  Identities=15%  Similarity=0.174  Sum_probs=198.7

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||++.|+++.|+. +.+||||..+|.|+||+..++  .....+...-..|.-+.|+|.+..|+.|+.||.+-+|.+.++.
T Consensus       104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg--~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~  181 (399)
T KOG0296|consen  104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG--GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA  181 (399)
T ss_pred             CCCCceEEEEEccCceEEEecCCCccEEEEEcccC--ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence            7999999999999 999999999999999999987  4555554455678889999999999999999999999999888


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC------------------------
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT------------------------  135 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~------------------------  135 (261)
                      ..+.+..+..+..+-.+.|+|++++.+    ..|++|++||+.+++++..+....+                        
T Consensus       182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tg----y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~  257 (399)
T KOG0296|consen  182 LCKVMSGHNSPCTCGEFIPDGKRILTG----YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA  257 (399)
T ss_pred             eeeEecCCCCCcccccccCCCceEEEE----ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence            888888898999999999999999887    8899999999999988877641100                        


Q ss_pred             -------------------------cceEEEEEEeCCC-CceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEE
Q psy6859         136 -------------------------PLTVECIHYLGDA-IPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIK  189 (261)
Q Consensus       136 -------------------------~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  189 (261)
                                               ...+.++.+.|.. ...++++|+-||+|.|||+. ..++.+.+  .|+.+|+.+.
T Consensus       258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a-~~~~R~~c--~he~~V~~l~  334 (399)
T KOG0296|consen  258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA-ASTLRHIC--EHEDGVTKLK  334 (399)
T ss_pred             EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc-cchhheec--cCCCceEEEE
Confidence                                     0011111111110 11346889999999999998 77777777  6999999999


Q ss_pred             EcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         190 FNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       190 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |-+ ..+|++++.+|.|+.||.               +++++++.+.+|...|.+++.+|+.++++++|.|+
T Consensus       335 w~~-t~~l~t~c~~g~v~~wDa---------------RtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  335 WLN-TDYLLTACANGKVRQWDA---------------RTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             EcC-cchheeeccCceEEeeec---------------cccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence            999 789999999999999999               45899999999999999999999999999999985

>KOG0316|consensus

Probab=100.00  E-value=9.8e-36  Score=201.22  Aligned_cols=230  Identities=14%  Similarity=0.221  Sum_probs=198.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|+++|.++.|+- |+|.++++.|.+|++|++..+  .+++++.+|...|..++.+.|+..+++|+.|+.+.+||+++|+
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk   92 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK   92 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe
Confidence            5789999999998 999999999999999999987  8999999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc--eeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND--MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      .++.+..+...+..+.+.....    +.++|+.|..+++||.++..  +++.+..  ....+.++..+...    +++|+
T Consensus        93 v~Rr~rgH~aqVNtV~fNeesS----Vv~SgsfD~s~r~wDCRS~s~ePiQilde--a~D~V~Si~v~~he----IvaGS  162 (307)
T KOG0316|consen   93 VDRRFRGHLAQVNTVRFNEESS----VVASGSFDSSVRLWDCRSRSFEPIQILDE--AKDGVSSIDVAEHE----IVAGS  162 (307)
T ss_pred             eeeecccccceeeEEEecCcce----EEEeccccceeEEEEcccCCCCccchhhh--hcCceeEEEecccE----EEeec
Confidence            9999998888887777766553    44566999999999998764  4555443  44578888887766    89999


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      .||+++.||++ .+.....+   ...+|++++|+++++.++.++.|+++++.|-               .+++.+..+++
T Consensus       163 ~DGtvRtydiR-~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk---------------~tGklL~sYkG  223 (307)
T KOG0316|consen  163 VDGTVRTYDIR-KGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDK---------------ETGKLLKSYKG  223 (307)
T ss_pred             cCCcEEEEEee-cceeehhh---cCCcceeEEecCCCCEEEEeeccceeeeccc---------------chhHHHHHhcc
Confidence            99999999999 77665444   4678999999999999999999999999997               45889999999


Q ss_pred             Cccce--eeeeECCCCceEEEeecCC
Q psy6859         238 NKTYP--SGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~~v--~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |.+.=  ...+++.....+++||+||
T Consensus       224 hkn~eykldc~l~qsdthV~sgSEDG  249 (307)
T KOG0316|consen  224 HKNMEYKLDCCLNQSDTHVFSGSEDG  249 (307)
T ss_pred             cccceeeeeeeecccceeEEeccCCc
Confidence            87654  4567777888999999997

>KOG0273|consensus

Probab=100.00  E-value=5.1e-35  Score=215.21  Aligned_cols=233  Identities=17%  Similarity=0.262  Sum_probs=205.4

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      |++||.++.|+. |++|++++.|+++.+||..++  +..+.+.-|..+-..+.|-.+. .+++++.|+.|+++.+....+
T Consensus       275 HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g--~~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P  351 (524)
T KOG0273|consen  275 HKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG--TVKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRP  351 (524)
T ss_pred             cCCceEEEEEcCCCCEEEeccCCccEEEEeccCc--eEEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCc
Confidence            899999999999 999999999999999999887  7777888788877888896544 789999999999999999999


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC-------ceEE
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI-------PTAA  153 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  153 (261)
                      +.++..|..++.++.+.+.+..++++    +.|++++||.+........+..+  ...|..+.|+|.+.       ...+
T Consensus       352 ~~t~~GH~g~V~alk~n~tg~LLaS~----SdD~TlkiWs~~~~~~~~~l~~H--skei~t~~wsp~g~v~~n~~~~~~l  425 (524)
T KOG0273|consen  352 VKTFIGHHGEVNALKWNPTGSLLASC----SDDGTLKIWSMGQSNSVHDLQAH--SKEIYTIKWSPTGPVTSNPNMNLML  425 (524)
T ss_pred             ceeeecccCceEEEEECCCCceEEEe----cCCCeeEeeecCCCcchhhhhhh--ccceeeEeecCCCCccCCCcCCceE
Confidence            99999999999999999999888877    99999999999888777777664  44788888888753       2357


Q ss_pred             EEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859         154 VSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF  233 (261)
Q Consensus       154 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  233 (261)
                      ++++.|++|++||+. .+.++..|. .|..+|.+++|+|+|+++|+|+.||.|.+|+.               ++++.++
T Consensus       426 ~sas~dstV~lwdv~-~gv~i~~f~-kH~~pVysvafS~~g~ylAsGs~dg~V~iws~---------------~~~~l~~  488 (524)
T KOG0273|consen  426 ASASFDSTVKLWDVE-SGVPIHTLM-KHQEPVYSVAFSPNGRYLASGSLDGCVHIWST---------------KTGKLVK  488 (524)
T ss_pred             EEeecCCeEEEEEcc-CCceeEeec-cCCCceEEEEecCCCcEEEecCCCCeeEeccc---------------cchheeE
Confidence            888899999999999 999999997 89999999999999999999999999999999               4577777


Q ss_pred             ecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         234 EFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       234 ~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+.+ .+.|..++|+.+|.+|..+-.||
T Consensus       489 s~~~-~~~Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  489 SYQG-TGGIFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             eecC-CCeEEEEEEcCCCCEEEEEecCC
Confidence            7775 56699999999999998887775

>KOG0286|consensus

Probab=100.00  E-value=2e-35  Score=205.41  Aligned_cols=200  Identities=17%  Similarity=0.262  Sum_probs=188.1

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||++-+.|+.|-++..|+|++.|.++.+||++++  +.+..|.+|.+.|.++.++| +++.+++|+-|+..++||++.+.
T Consensus       143 gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g--~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~  220 (343)
T KOG0286|consen  143 GHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG--QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ  220 (343)
T ss_pred             CccceeEEEEEcCCCceEecCCCceEEEEEcccc--eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence            7999999999999888999999999999999998  89999999999999999999 99999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+++|..+...+..+.+.|+|..+++.    +.|++.++||++..+.+..++.......+.+++|+..++.  +++|..|
T Consensus       221 c~qtF~ghesDINsv~ffP~G~afatG----SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl--Lfagy~d  294 (343)
T KOG0286|consen  221 CVQTFEGHESDINSVRFFPSGDAFATG----SDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL--LFAGYDD  294 (343)
T ss_pred             eeEeecccccccceEEEccCCCeeeec----CCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE--EEeeecC
Confidence            999999999999999999999877766    9999999999999999999887766778999999999975  7788889


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      .++.+||.- .++.+..+. +|++.|.++..+|||.-|++|+.|..++||.
T Consensus       295 ~~c~vWDtl-k~e~vg~L~-GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  295 FTCNVWDTL-KGERVGVLA-GHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CceeEeecc-ccceEEEee-ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999998 888888998 9999999999999999999999999999994

>KOG0277|consensus

Probab=100.00  E-value=6.2e-36  Score=204.16  Aligned_cols=236  Identities=16%  Similarity=0.221  Sum_probs=198.6

Q ss_pred             CCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccccc
Q psy6859           3 RSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         3 ~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      .+.+..++|++  .+.+++++.||++++||... ...++..++.|...|.++.|++ +.+.+++++.|++|++|+....+
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCC-CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            35788999998  67899999999999999654 3378999999999999999997 56678888999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecC-CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          80 MINMIKLDFTPLTVECIHYLG-DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      .++++..+...+....++|.. +.+++    ++.|+++++||++.......+..+  ...+.++.|+.-..+ ++++|+.
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas----~Sgd~~l~lwdvr~~gk~~~i~ah--~~Eil~cdw~ky~~~-vl~Tg~v  211 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFAS----ASGDGTLRLWDVRSPGKFMSIEAH--NSEILCCDWSKYNHN-VLATGGV  211 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEE----ccCCceEEEEEecCCCceeEEEec--cceeEeecccccCCc-EEEecCC
Confidence            999999887777777777754 33444    499999999999865444446554  457899999877665 5899999


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      |+.|+.||+++-..++.++. +|.-.|..++|||... +||+++.|-+++|||...              ....+.+...
T Consensus       212 d~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~--------------~ds~~e~~~~  276 (311)
T KOG0277|consen  212 DNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER--------------QDSAIETVDH  276 (311)
T ss_pred             CceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhccccceEEeccccc--------------chhhhhhhhc
Confidence            99999999997778999997 9999999999999765 789999999999999863              2456667778


Q ss_pred             CccceeeeeECC-CCceEEEeecCC
Q psy6859         238 NKTYPSGLSFSP-DGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~-~~~~l~s~~~Dg  261 (261)
                      |+.-+..+.||+ ++.++|++++|.
T Consensus       277 HtEFv~g~Dws~~~~~~vAs~gWDe  301 (311)
T KOG0277|consen  277 HTEFVCGLDWSLFDPGQVASTGWDE  301 (311)
T ss_pred             cceEEeccccccccCceeeeccccc
Confidence            999999999998 678999999984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.5e-34  Score=213.83  Aligned_cols=234  Identities=19%  Similarity=0.335  Sum_probs=200.0

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|.++|++++|+| ++++++++.||.+++|++.+.  +....+..|...+..+.|+|+++++++++.||.+++|++.+++
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~   84 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE   84 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence            6999999999999 899999999999999999876  5677788899999999999999999999999999999999887


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ....+..+...+..+.+.+++..+++.    +.++.+.+||+++++....+..  +...+.++.++|++..  +++++.+
T Consensus        85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~--l~~~~~~  156 (289)
T cd00200          85 CVRTLTGHTSYVSSVAFSPDGRILSSS----SRDKTIKVWDVETGKCLTTLRG--HTDWVNSVAFSPDGTF--VASSSQD  156 (289)
T ss_pred             ceEEEeccCCcEEEEEEcCCCCEEEEe----cCCCeEEEEECCCcEEEEEecc--CCCcEEEEEEcCcCCE--EEEEcCC
Confidence            777777666667777777775555444    5699999999998877777663  4557899999998653  6677679


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      +.|++||++ .++++..+. .|...+.++.|+|+++.+++++.|+.+++||++.               ++.+..+..|.
T Consensus       157 ~~i~i~d~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~---------------~~~~~~~~~~~  219 (289)
T cd00200         157 GTIKLWDLR-TGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST---------------GKCLGTLRGHE  219 (289)
T ss_pred             CcEEEEEcc-ccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCC---------------CceecchhhcC
Confidence            999999998 888888887 8888999999999999999999999999999853               56667777888


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..+.+++|+|++.++++++.||
T Consensus       220 ~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         220 NGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             CceEEEEEcCCCcEEEEEcCCC
Confidence            8999999999988888887564

>KOG0276|consensus

Probab=100.00  E-value=4.8e-35  Score=222.47  Aligned_cols=234  Identities=13%  Similarity=0.149  Sum_probs=214.1

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      |++.|.++.|+| ...++++-.+|.|.||+.+++  ..++.+.-..-+|++..|-+..+.+++|+.|..|++|+.++++.
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek   89 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK   89 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccc--eeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence            678999999999 889999999999999999998  88889988889999999999888999999999999999999999


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      +..+..|..-+.++.++|....+++.    +.|-+|++||.+.. .+.+.++.|  ...+.+++|+|..... +++++-|
T Consensus        90 V~~FeAH~DyIR~iavHPt~P~vLts----SDDm~iKlW~we~~wa~~qtfeGH--~HyVMqv~fnPkD~nt-FaS~sLD  162 (794)
T KOG0276|consen   90 VKTFEAHSDYIRSIAVHPTLPYVLTS----SDDMTIKLWDWENEWACEQTFEGH--EHYVMQVAFNPKDPNT-FASASLD  162 (794)
T ss_pred             eEEeeccccceeeeeecCCCCeEEec----CCccEEEEeeccCceeeeeEEcCc--ceEEEEEEecCCCccc-eeeeecc
Confidence            99999999989999999988877776    99999999999865 566667664  5589999999987654 8999999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCC--CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY--QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      ++|++|.+. ...+..+++ +|+..|+++.+-+.|  .+|++|+.|..++|||.+               +..|++++.+
T Consensus       163 rTVKVWslg-s~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ---------------tk~CV~TLeG  225 (794)
T KOG0276|consen  163 RTVKVWSLG-SPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ---------------TKSCVQTLEG  225 (794)
T ss_pred             ccEEEEEcC-CCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecc---------------hHHHHHHhhc
Confidence            999999998 889999998 999999999998755  599999999999999995               4789999999


Q ss_pred             CccceeeeeECCCCceEEEeecCC
Q psy6859         238 NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |...|..+.|+|.-..+++||+||
T Consensus       226 Ht~Nvs~v~fhp~lpiiisgsEDG  249 (794)
T KOG0276|consen  226 HTNNVSFVFFHPELPIIISGSEDG  249 (794)
T ss_pred             ccccceEEEecCCCcEEEEecCCc
Confidence            999999999999999999999997

>KOG1407|consensus

Probab=100.00  E-value=3.9e-35  Score=200.95  Aligned_cols=233  Identities=16%  Similarity=0.227  Sum_probs=199.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ||...|.+|+|+- |..|++|+.|+++.+|+++..........++|.+.|-.++|+| ....+++++.|.+|++||++.+
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~   97 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG   97 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence            6889999999998 9999999999999999998764344456788999999999987 5668999999999999999999


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ++...+......+ ...++|++.+++++    +.|..|.+.|.++.+.....+...   .+..+.|+.++.. ++++. .
T Consensus        98 k~~~~i~~~~eni-~i~wsp~g~~~~~~----~kdD~it~id~r~~~~~~~~~~~~---e~ne~~w~~~nd~-Fflt~-G  167 (313)
T KOG1407|consen   98 KCTARIETKGENI-NITWSPDGEYIAVG----NKDDRITFIDARTYKIVNEEQFKF---EVNEISWNNSNDL-FFLTN-G  167 (313)
T ss_pred             cEEEEeeccCcce-EEEEcCCCCEEEEe----cCcccEEEEEecccceeehhcccc---eeeeeeecCCCCE-EEEec-C
Confidence            9999887665544 45667888888877    899999999999988777766443   5566777755543 34443 3


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN  238 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (261)
                      .|.|.|.... .-+++..++ +|.....+|.|+|+|+++|+|+.|-.+.+||++.               .-+++.+..+
T Consensus       168 lG~v~ILsyp-sLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E---------------LiC~R~isRl  230 (313)
T KOG1407|consen  168 LGCVEILSYP-SLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDE---------------LICERCISRL  230 (313)
T ss_pred             CceEEEEecc-ccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhH---------------hhhheeeccc
Confidence            7999999998 889999998 9999999999999999999999999999999953               5677888889


Q ss_pred             ccceeeeeECCCCceEEEeecC
Q psy6859         239 KTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       239 ~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      .-+|+.+.||.||++||+||+|
T Consensus       231 dwpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  231 DWPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             cCceEEEEeccCcceeeccCcc
Confidence            9999999999999999999998

>KOG0319|consensus

Probab=100.00  E-value=1.2e-35  Score=229.22  Aligned_cols=236  Identities=17%  Similarity=0.214  Sum_probs=205.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCC--ceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEcc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEE--GIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~   76 (261)
                      ||++.|.+++... |.+|+||+.|.++++|.++++  ...++....+|++.|.+++++.. ..+|+++|.|+++++|++.
T Consensus       363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~  442 (775)
T KOG0319|consen  363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP  442 (775)
T ss_pred             CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence            8999999999444 889999999999999988543  12456677899999999999763 4689999999999999987


Q ss_pred             cccee-----e----eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC
Q psy6859          77 NFDMI-----N----MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        77 ~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                      ..+..     .    ....|...+.++.+.|+...++++    +.|++.+||+++......++..|  ...+.++.|+|.
T Consensus       443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~----SqDktaKiW~le~~~l~~vLsGH--~RGvw~V~Fs~~  516 (775)
T KOG0319|consen  443 KSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG----SQDKTAKIWDLEQLRLLGVLSGH--TRGVWCVSFSKN  516 (775)
T ss_pred             CcccccccceehhhHHHHhhcccccceEecCCCceEEec----ccccceeeecccCceEEEEeeCC--ccceEEEEeccc
Confidence            62211     1    122466678889999998877776    99999999999988888888875  457999999999


Q ss_pred             CCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecc
Q psy6859         148 AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESK  227 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  227 (261)
                      .+.  +++++.|.+|+||.+. +..++++|+ +|...|..+.|-.+++.|++++.||.+++|++               +
T Consensus       517 dq~--laT~SgD~TvKIW~is-~fSClkT~e-GH~~aVlra~F~~~~~qliS~~adGliKlWni---------------k  577 (775)
T KOG0319|consen  517 DQL--LATCSGDKTVKIWSIS-TFSCLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNI---------------K  577 (775)
T ss_pred             cce--eEeccCCceEEEEEec-cceeeeeec-CccceeEeeeeeeCCcEEEeccCCCcEEEEec---------------c
Confidence            864  9999999999999999 999999998 99999999999999999999999999999999               6


Q ss_pred             cccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         228 LDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       228 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +.+|+.++..|.+.|++++-+|.+.++++|+.||
T Consensus       578 t~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg  611 (775)
T KOG0319|consen  578 TNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG  611 (775)
T ss_pred             chhhhhhhhhccceeEEEeecCccceeEecCCCe
Confidence            6899999999999999999999999999999986

>KOG0271|consensus

Probab=100.00  E-value=1.7e-35  Score=212.90  Aligned_cols=199  Identities=17%  Similarity=0.239  Sum_probs=167.3

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-----CCCEEEEEeCCCcEEEEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-----NGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~v~~wd   74 (261)
                      ||.+.|.|++|+| ++.||+|+.||+|++||..+++ +..+.+.+|...|++++|.|     ..++|++++.||.++|||
T Consensus       155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd  233 (480)
T KOG0271|consen  155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD  233 (480)
T ss_pred             CCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence            7999999999999 9999999999999999998854 67788999999999999964     567888888999999998


Q ss_pred             ccccceeeeeeccCc-----------------------------------------------------------------
Q psy6859          75 VINFDMINMIKLDFT-----------------------------------------------------------------   89 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~-----------------------------------------------------------------   89 (261)
                      +..++++..+..|..                                                                 
T Consensus       234 ~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~  313 (480)
T KOG0271|consen  234 TKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK  313 (480)
T ss_pred             ccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccccc
Confidence            876555544422222                                                                 


Q ss_pred             -------------------------------------------------------ceeEEEEeecCCceeeeeeecCCCC
Q psy6859          90 -------------------------------------------------------PLTVECIHYLGDAIPTAAVSDQDSS  114 (261)
Q Consensus        90 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~s~~~d~  114 (261)
                                                                             .+..+.++|++.+++++    +-|+
T Consensus       314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASa----SFDk  389 (480)
T KOG0271|consen  314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASA----SFDK  389 (480)
T ss_pred             CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEe----eccc
Confidence                                                                   23334445555555554    8899


Q ss_pred             eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC
Q psy6859         115 RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY  194 (261)
Q Consensus       115 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  194 (261)
                      .|++||.++++.+..+..+  -..+..++|+.|..  ++++|+.|.++++||++ +.++...+. +|...|.++.|+|||
T Consensus       390 SVkLW~g~tGk~lasfRGH--v~~VYqvawsaDsR--LlVS~SkDsTLKvw~V~-tkKl~~DLp-Gh~DEVf~vDwspDG  463 (480)
T KOG0271|consen  390 SVKLWDGRTGKFLASFRGH--VAAVYQVAWSADSR--LLVSGSKDSTLKVWDVR-TKKLKQDLP-GHADEVFAVDWSPDG  463 (480)
T ss_pred             ceeeeeCCCcchhhhhhhc--cceeEEEEeccCcc--EEEEcCCCceEEEEEee-eeeecccCC-CCCceEEEEEecCCC
Confidence            9999999999999888874  45789999999986  49999999999999999 899999997 999999999999999


Q ss_pred             CEEEEEcCCCeEEEee
Q psy6859         195 QVVVSVDKAGILEYWS  210 (261)
Q Consensus       195 ~~l~~~~~dg~i~iwd  210 (261)
                      +.+++|+.|..+++|.
T Consensus       464 ~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  464 QRVASGGKDKVLRLWR  479 (480)
T ss_pred             ceeecCCCceEEEeec
Confidence            9999999999999994

>KOG0281|consensus

Probab=100.00  E-value=4e-36  Score=213.99  Aligned_cols=231  Identities=16%  Similarity=0.263  Sum_probs=186.2

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      ||++.|.|+.|.. ..+++|+.|.+|++||++++  +++.++-+|...|..+.|+..  ++++++.|.++.+||+.....
T Consensus       235 GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tg--e~l~tlihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps~  309 (499)
T KOG0281|consen  235 GHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTG--EPLNTLIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPTD  309 (499)
T ss_pred             cCCCcEEeeeccc-eEEEecCCCceEEEEeccCC--chhhHHhhhcceeEEEEEeCC--EEEEecCCceeEEEeccCchH
Confidence            8999999999974 48999999999999999998  899999999999999999755  999999999999999976542


Q ss_pred             ---eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          81 ---INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        81 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                         .+.+..+..  .+..+..+.+++.++    +.|.+|++|++.+.+.++.+..+.  ..|.|+.+....    +++|+
T Consensus       310 it~rrVLvGHrA--aVNvVdfd~kyIVsA----SgDRTikvW~~st~efvRtl~gHk--RGIAClQYr~rl----vVSGS  377 (499)
T KOG0281|consen  310 ITLRRVLVGHRA--AVNVVDFDDKYIVSA----SGDRTIKVWSTSTCEFVRTLNGHK--RGIACLQYRDRL----VVSGS  377 (499)
T ss_pred             HHHHHHHhhhhh--heeeeccccceEEEe----cCCceEEEEeccceeeehhhhccc--ccceehhccCeE----EEecC
Confidence               223333333  344455566677666    999999999999999999987753  467777776544    99999


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      .|.+|++||+. .+.+++.++ +|+.-|.++.|+  .+.+++|+.||+|++||+....-...      ....-++..+..
T Consensus       378 SDntIRlwdi~-~G~cLRvLe-GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra------~~~~~Cl~~lv~  447 (499)
T KOG0281|consen  378 SDNTIRLWDIE-CGACLRVLE-GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRA------PASTLCLRTLVE  447 (499)
T ss_pred             CCceEEEEecc-ccHHHHHHh-chHHhhhheeec--CceeeeccccceEEEEecccccCCcc------cccchHHHhhhh
Confidence            99999999999 999999998 999999999995  56799999999999999976421100      012236667778


Q ss_pred             CccceeeeeECCCCceEEEeecC
Q psy6859         238 NKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      |.+.|..+.|  |...+++++.|
T Consensus       448 hsgRVFrLQF--D~fqIvsssHd  468 (499)
T KOG0281|consen  448 HSGRVFRLQF--DEFQIISSSHD  468 (499)
T ss_pred             ccceeEEEee--cceEEEeccCC
Confidence            9999999999  45567777665

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.9e-33  Score=209.45  Aligned_cols=234  Identities=18%  Similarity=0.328  Sum_probs=201.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|...+..+.|+| ++++++++.||.|++|++.+.  +....+..|...|.++.|+++++++++++.|+.+++||+.+++
T Consensus        49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  126 (289)
T cd00200          49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK  126 (289)
T ss_pred             cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE
Confidence            4778899999999 779999999999999999876  6677788898899999999998889888889999999999888


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ....+..+...+..+.+.+++..+++.    +.++.+++||+++++.+..+..  +...+.++.++|++..  +++++.+
T Consensus       127 ~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~--l~~~~~~  198 (289)
T cd00200         127 CLTTLRGHTDWVNSVAFSPDGTFVASS----SQDGTIKLWDLRTGKCVATLTG--HTGEVNSVAFSPDGEK--LLSSSSD  198 (289)
T ss_pred             EEEEeccCCCcEEEEEEcCcCCEEEEE----cCCCcEEEEEccccccceeEec--CccccceEEECCCcCE--EEEecCC
Confidence            888777666667778888776655544    5699999999998887777764  3447899999999865  6666779


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      +.+++||++ .++++..+. .|...+.++.|+|++.++++++.|+.|++||+.+               ++.+..+..|.
T Consensus       199 ~~i~i~d~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~---------------~~~~~~~~~~~  261 (289)
T cd00200         199 GTIKLWDLS-TGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT---------------GECVQTLSGHT  261 (289)
T ss_pred             CcEEEEECC-CCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC---------------ceeEEEccccC
Confidence            999999998 788888886 7888999999999988999988899999999843               56677777899


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..|.+++|+|++++|++++.||
T Consensus       262 ~~i~~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         262 NSVTSLAWSPDGKRLASGSADG  283 (289)
T ss_pred             CcEEEEEECCCCCEEEEecCCC
Confidence            9999999999999999999886

>KOG0293|consensus

Probab=100.00  E-value=1.6e-34  Score=209.72  Aligned_cols=250  Identities=12%  Similarity=0.111  Sum_probs=202.7

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC-CceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQE-EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      .|++.|+-+.||+ |++||+++.|.+..+|.+.. ...+...++.+|..+|..+.|+||.+++++|+.|..+.+||+.+|
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg  301 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG  301 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence            3899999999999 99999999999999999865 335678899999999999999999999999999999999999999


Q ss_pred             ceeeeeecc-CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          79 DMINMIKLD-FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        79 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      .....+... .....++++.|++..++++    +.|+++..||+.... +...+.... ..+.+++..+|+.+  +++..
T Consensus       302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~G----s~dr~i~~wdlDgn~-~~~W~gvr~-~~v~dlait~Dgk~--vl~v~  373 (519)
T KOG0293|consen  302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTG----SPDRTIIMWDLDGNI-LGNWEGVRD-PKVHDLAITYDGKY--VLLVT  373 (519)
T ss_pred             hhhhhcccCcCCCcceeEEccCCceeEec----CCCCcEEEecCCcch-hhccccccc-ceeEEEEEcCCCcE--EEEEe
Confidence            988877644 3456677888998877665    999999999998663 333333322 37899999999998  44445


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC-------------------
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF-------------------  218 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------  218 (261)
                      .|..|++|+.. +......+  ....+|++++.|.+++++++.-.+..+++||++......                   
T Consensus       374 ~d~~i~l~~~e-~~~dr~li--se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~  450 (519)
T KOG0293|consen  374 VDKKIRLYNRE-ARVDRGLI--SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG  450 (519)
T ss_pred             cccceeeechh-hhhhhccc--cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence            79999999987 55555445  466789999999998888777788888888887532100                   


Q ss_pred             -----------CeeeeeecccccceeecCCCccceeeeeECC-CCceEEEeecCC
Q psy6859         219 -----------PKCVHFESKLDTDLFEFAKNKTYPSGLSFSP-DGNKFVTISMDR  261 (261)
Q Consensus       219 -----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~Dg  261 (261)
                                 .+.+.|...+++++..+.||...|++++|+| +-.++|+||+||
T Consensus       451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg  505 (519)
T KOG0293|consen  451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG  505 (519)
T ss_pred             CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC
Confidence                       1234567788999999999999999999999 557899999997

>KOG0645|consensus

Probab=100.00  E-value=5.8e-33  Score=191.23  Aligned_cols=230  Identities=13%  Similarity=0.204  Sum_probs=192.4

Q ss_pred             CCCCCeEEEEEcCC--CeEEEecCCCeEEEEeccC-CceeeeEEe-eccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859           1 MHRSPITHVVVTKT--DFVITASNDGHIKFWKKQE-EGIEFVKHF-RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         1 gH~~~v~~~~~~~~--~~l~s~~~d~~i~iw~~~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~   76 (261)
                      ||++.|..++|+|+  ..||+++.|..|++|+... ....+...+ .+|+..|++++|+|.|++|++++.|.++.||.-.
T Consensus        12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~   91 (312)
T KOG0645|consen   12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE   91 (312)
T ss_pred             CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence            79999999999994  5899999999999999884 333444444 4699999999999999999999999999999876


Q ss_pred             cc--ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC---ceeeEEeecCCcceEEEEEEeCCCCce
Q psy6859          77 NF--DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN---DMINMIKLDFTPLTVECIHYLGDAIPT  151 (261)
Q Consensus        77 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (261)
                      .+  +++..++.+...+.++.++.+|++++++    +.|+.|-||.+...   ++...++.|  ..-+..+.|+|...  
T Consensus        92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATC----SRDKSVWiWe~deddEfec~aVL~~H--tqDVK~V~WHPt~d--  163 (312)
T KOG0645|consen   92 DGEFECVATLEGHENEVKCVAWSASGNYLATC----SRDKSVWIWEIDEDDEFECIAVLQEH--TQDVKHVIWHPTED--  163 (312)
T ss_pred             CCceeEEeeeeccccceeEEEEcCCCCEEEEe----eCCCeEEEEEecCCCcEEEEeeeccc--cccccEEEEcCCcc--
Confidence            44  5788888899999999999999999888    99999999998854   345555554  44678899999775  


Q ss_pred             EEEEecCCCeEEEEEccC--CCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccc
Q psy6859         152 AAVSDQDSSHVHIYDCKG--NGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLD  229 (261)
Q Consensus       152 ~~~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  229 (261)
                      ++++++.|++|++|+-..  .-.+++++. +|...|.+++|+|.|..|++++.|++++||...                 
T Consensus       164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----------------  225 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----------------  225 (312)
T ss_pred             eeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeec-----------------
Confidence            499999999999998762  236788998 999999999999999999999999999999852                 


Q ss_pred             cceeecC-CCccceeeeeECCCCceEEEeecCC
Q psy6859         230 TDLFEFA-KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       230 ~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                         ..+. .|+..+..+.|.  ...||+++.|+
T Consensus       226 ---~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~  253 (312)
T KOG0645|consen  226 ---TDLSGMHSRALYDVPWD--NGVIASGGGDD  253 (312)
T ss_pred             ---cCcchhcccceEeeeec--ccceEeccCCC
Confidence               1122 378899999998  45788888774

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.2e-33  Score=233.04  Aligned_cols=240  Identities=16%  Similarity=0.171  Sum_probs=194.3

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc------eeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG------IEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKV   72 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~------~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~   72 (261)
                      +|.+.|++++|+| ++++|+|+.|+.|+||+.....      ..+...+. +...|.+++|++ ++.+|++++.||+|++
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l  559 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV  559 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence            4889999999999 8999999999999999975310      01223333 346799999987 5789999999999999


Q ss_pred             EEccccceeeeeeccCcceeEEEEee-cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC-CCCc
Q psy6859          73 FDVINFDMINMIKLDFTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG-DAIP  150 (261)
Q Consensus        73 wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  150 (261)
                      ||+.+++.+..+..+...+..+.+++ ++..++++    +.|+.|++||++++..+..+..+   ..+.++.|++ ++..
T Consensus       560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg----s~Dg~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~g~~  632 (793)
T PLN00181        560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASG----SDDGSVKLWSINQGVSIGTIKTK---ANICCVQFPSESGRS  632 (793)
T ss_pred             EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEE----cCCCEEEEEECCCCcEEEEEecC---CCeEEEEEeCCCCCE
Confidence            99999998888888888888888876 55556555    89999999999998888777643   3678899865 4543


Q ss_pred             eEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccc
Q psy6859         151 TAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDT  230 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  230 (261)
                        +++|+.|+.|++||++....++..+. +|...|.++.|. ++.+|++++.|+.|++||++....         .....
T Consensus       633 --latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~---------~~~~~  699 (793)
T PLN00181        633 --LAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS---------GINET  699 (793)
T ss_pred             --EEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc---------ccCCc
Confidence              88899999999999983333667776 899999999997 678999999999999999863210         01235


Q ss_pred             ceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         231 DLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       231 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++..+.+|...+..++|+|++++|++|+.||
T Consensus       700 ~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~  730 (793)
T PLN00181        700 PLHSFMGHTNVKNFVGLSVSDGYIATGSETN  730 (793)
T ss_pred             ceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence            6778889999999999999999999999986

>KOG0292|consensus

Probab=100.00  E-value=8.3e-34  Score=223.52  Aligned_cols=237  Identities=16%  Similarity=0.202  Sum_probs=204.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      .|.++|+.++|+| +.++++|+.|-.|+||+..+.  +++.++.+|-+.|..+.|++.-.+|+++|.|.+|+||+..+++
T Consensus        49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~  126 (1202)
T KOG0292|consen   49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK  126 (1202)
T ss_pred             ccCCccceeeecCCCCeEEecCCccEEEEEecccc--eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence            5999999999999 899999999999999999988  9999999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce---------------------------eeEEee
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM---------------------------INMIKL  132 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---------------------------~~~~~~  132 (261)
                      ++..+..|.+-+.+..++|..+.++++    |-|.+|++||+..-+.                           +.....
T Consensus       127 ~iavltGHnHYVMcAqFhptEDlIVSa----SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL  202 (1202)
T KOG0292|consen  127 CIAVLTGHNHYVMCAQFHPTEDLIVSA----SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL  202 (1202)
T ss_pred             eEEEEecCceEEEeeccCCccceEEEe----cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence            999999999999999999988888777    9999999999863211                           111223


Q ss_pred             cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC-ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         133 DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG-TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      ..|...|..++|+|...  ++++|++|..|++|.+..+. -.+.+.. +|.+.|.++-|+|...++++.++|++|++||+
T Consensus       203 EGHDRGVNwaAfhpTlp--liVSG~DDRqVKlWrmnetKaWEvDtcr-gH~nnVssvlfhp~q~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  203 EGHDRGVNWAAFHPTLP--LIVSGADDRQVKLWRMNETKAWEVDTCR-GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             cccccccceEEecCCcc--eEEecCCcceeeEEEeccccceeehhhh-cccCCcceEEecCccceeEecCCCccEEEEec
Confidence            34555789999999886  49999999999999997222 1244555 99999999999999999999999999999999


Q ss_pred             ccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         212 YKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..               .+.+++++...+.-+.++-+|..+++|+|-+.|
T Consensus       280 ~k---------------Rt~v~tfrrendRFW~laahP~lNLfAAgHDsG  314 (1202)
T KOG0292|consen  280 TK---------------RTSVQTFRRENDRFWILAAHPELNLFAAGHDSG  314 (1202)
T ss_pred             cc---------------ccceeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence            53               667788877778889999999999888765443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9.9e-33  Score=231.84  Aligned_cols=242  Identities=15%  Similarity=0.208  Sum_probs=187.7

Q ss_pred             CCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccccc
Q psy6859           3 RSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         3 ~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ...|.+++|+|  +.+|++++.||+|++||+.+.  +.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.+++
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~--~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~  609 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV  609 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC--eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence            45788999987  679999999999999999877  77888999999999999996 78899999999999999999988


Q ss_pred             eeeeeeccCcceeEEEEe-ecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          80 MINMIKLDFTPLTVECIH-YLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      .+..+..+ ..+..+.+. +++..++++    +.|+.|++||+++.+ .+..+..  +...+.++.|.+ +..  +++++
T Consensus       610 ~~~~~~~~-~~v~~v~~~~~~g~~latg----s~dg~I~iwD~~~~~~~~~~~~~--h~~~V~~v~f~~-~~~--lvs~s  679 (793)
T PLN00181        610 SIGTIKTK-ANICCVQFPSESGRSLAFG----SADHKVYYYDLRNPKLPLCTMIG--HSKTVSYVRFVD-SST--LVSSS  679 (793)
T ss_pred             EEEEEecC-CCeEEEEEeCCCCCEEEEE----eCCCeEEEEECCCCCccceEecC--CCCCEEEEEEeC-CCE--EEEEE
Confidence            88877644 334445553 456655555    899999999998765 3444443  555788999974 433  88899


Q ss_pred             CCCeEEEEEccCC-----CccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce
Q psy6859         158 DSSHVHIYDCKGN-----GTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL  232 (261)
Q Consensus       158 ~d~~i~i~d~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  232 (261)
                      .|+.|++||++..     ..++..+. +|...+..++|+|++++|++|+.|+.|++|+.......    ..+.......+
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~----~s~~~~~~~~~  754 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV----LSYKFKTIDPV  754 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce----EEEecccCCcc
Confidence            9999999999721     25677887 89999999999999999999999999999997532100    00000111111


Q ss_pred             --eecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         233 --FEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       233 --~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                        .....|...|.+++|+|++..|++|+.||
T Consensus       755 ~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG  785 (793)
T PLN00181        755 SGLEVDDASQFISSVCWRGQSSTLVAANSTG  785 (793)
T ss_pred             cccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence              11234667899999999999999999986

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.4e-32  Score=215.91  Aligned_cols=208  Identities=15%  Similarity=0.242  Sum_probs=166.2

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCce-----eeeEEeeccccceeEEEEeeCC-CEEEEEeCCCcEEE
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGI-----EFVKHFRSHLGVIHSICTNYNG-TLLCTVASDKAMKV   72 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~~   72 (261)
                      ||+++|++++|+|  +++|++|+.|++|++|++.+.+.     .++..+.+|...|.+++|+|++ ++|++++.|++|++
T Consensus        73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI  152 (493)
T PTZ00421         73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV  152 (493)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence            7999999999999  56899999999999999976421     3567889999999999999975 69999999999999


Q ss_pred             EEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          73 FDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        73 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      ||+.+++.+..+..+...+..+.+++++..++++    +.|+.|++||+++++.+..+..+... ....+.|.++... +
T Consensus       153 WDl~tg~~~~~l~~h~~~V~sla~spdG~lLatg----s~Dg~IrIwD~rsg~~v~tl~~H~~~-~~~~~~w~~~~~~-i  226 (493)
T PTZ00421        153 WDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT----SKDKKLNIIDPRDGTIVSSVEAHASA-KSQRCLWAKRKDL-I  226 (493)
T ss_pred             EECCCCeEEEEEcCCCCceEEEEEECCCCEEEEe----cCCCEEEEEECCCCcEEEEEecCCCC-cceEEEEcCCCCe-E
Confidence            9999999888888777788888999988877766    89999999999999888877765432 3345667777654 2


Q ss_pred             EEEe---cCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccc
Q psy6859         153 AVSD---QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQ  214 (261)
Q Consensus       153 ~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~  214 (261)
                      +.+|   +.|+.|++||++....++..........+....|++++++|++++ .|+.|++||+.++
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            3333   358999999998434555554312334566678999999998877 5999999999653

>KOG0276|consensus

Probab=100.00  E-value=1.3e-33  Score=214.78  Aligned_cols=233  Identities=15%  Similarity=0.193  Sum_probs=199.0

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-cee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-DMI   81 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-~~~   81 (261)
                      -||++..|-+ .+.+++|+.|..|+||+..+.  +.+..|.+|.+.|++++.+|...+++++|.|-+|++||.+.+ .+.
T Consensus        56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~  133 (794)
T KOG0276|consen   56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE  133 (794)
T ss_pred             cchhhheeeeccceEEEecCCceEEEEecccc--eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee
Confidence            4677778887 789999999999999999998  899999999999999999999999999999999999998754 577


Q ss_pred             eeeeccCcceeEEEEeecC-CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          82 NMIKLDFTPLTVECIHYLG-DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ++++.|.+-+..+++.|.. +.+++    ++.|++|++|.+.+..+..+++.  +...|.|+.|-+.+....+++|++|.
T Consensus       134 qtfeGH~HyVMqv~fnPkD~ntFaS----~sLDrTVKVWslgs~~~nfTl~g--HekGVN~Vdyy~~gdkpylIsgaDD~  207 (794)
T KOG0276|consen  134 QTFEGHEHYVMQVAFNPKDPNTFAS----ASLDRTVKVWSLGSPHPNFTLEG--HEKGVNCVDYYTGGDKPYLISGADDL  207 (794)
T ss_pred             eEEcCcceEEEEEEecCCCccceee----eeccccEEEEEcCCCCCceeeec--cccCcceEEeccCCCcceEEecCCCc
Confidence            7888888888888888754 44444    49999999999999888888876  45578999998877656699999999


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCcc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT  240 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (261)
                      ++++||.+ +..++++++ +|...|..+.|+|.-..+++|++||+++||+-.+               .+...++.-.-.
T Consensus       208 tiKvWDyQ-tk~CV~TLe-GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T---------------y~lE~tLn~gle  270 (794)
T KOG0276|consen  208 TIKVWDYQ-TKSCVQTLE-GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT---------------YKLEKTLNYGLE  270 (794)
T ss_pred             eEEEeecc-hHHHHHHhh-cccccceEEEecCCCcEEEEecCCccEEEecCcc---------------eehhhhhhcCCc
Confidence            99999999 999999998 9999999999999999999999999999999743               444555555566


Q ss_pred             ceeeeeECCCCceEEEeecCC
Q psy6859         241 YPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       241 ~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++++++-.+.++.++.|.++|
T Consensus       271 RvW~I~~~k~~~~i~vG~Deg  291 (794)
T KOG0276|consen  271 RVWCIAAHKGDGKIAVGFDEG  291 (794)
T ss_pred             eEEEEeecCCCCeEEEeccCC
Confidence            788888777777777776554

>KOG0318|consensus

Probab=100.00  E-value=1.9e-32  Score=204.36  Aligned_cols=251  Identities=14%  Similarity=0.232  Sum_probs=204.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC--C--CcEEEEEc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS--D--KAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d--g~v~~wd~   75 (261)
                      .|..+++-..|+| |.++|+|...|+||||+....+..+..+++.-.++|..++|++|++.|++.++  +  |.+.+|| 
T Consensus        57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D-  135 (603)
T KOG0318|consen   57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD-  135 (603)
T ss_pred             cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec-
Confidence            4888999999999 99999999999999999987655666778888899999999999999988764  3  3455555 


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                       +|..+-++..+...+..+.+.+....-+   ++++.|+.|.+|+=.-.+....+..  |...+.++.|+||+..  +++
T Consensus       136 -SG~SvGei~GhSr~ins~~~KpsRPfRi---~T~sdDn~v~ffeGPPFKFk~s~r~--HskFV~~VRysPDG~~--Fat  207 (603)
T KOG0318|consen  136 -SGNSVGEITGHSRRINSVDFKPSRPFRI---ATGSDDNTVAFFEGPPFKFKSSFRE--HSKFVNCVRYSPDGSR--FAT  207 (603)
T ss_pred             -CCCccceeeccceeEeeeeccCCCceEE---EeccCCCeEEEeeCCCeeeeecccc--cccceeeEEECCCCCe--EEE
Confidence             7778888888887788888777543322   3469999999998655544444443  4558999999999986  889


Q ss_pred             ecCCCeEEEEEccCCCccceeec--cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC----Cee--------
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLD--RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF----PKC--------  221 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~--------  221 (261)
                      .+.||++.+||-. +++.+..+.  .+|++.|.+++|+||++.+++++.|.+++|||+.+++...    +..        
T Consensus       208 ~gsDgki~iyDGk-tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~  286 (603)
T KOG0318|consen  208 AGSDGKIYIYDGK-TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC  286 (603)
T ss_pred             ecCCccEEEEcCC-CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence            9999999999998 999988886  4799999999999999999999999999999998764311    100        


Q ss_pred             ---------------e-eeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         222 ---------------V-HFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       222 ---------------~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                     + -++......++.+.+|...|+++..+||+++|.+|+.||
T Consensus       287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG  342 (603)
T KOG0318|consen  287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG  342 (603)
T ss_pred             EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence                           0 123344557788899999999999999999999999997

>KOG0313|consensus

Probab=100.00  E-value=2.7e-33  Score=201.10  Aligned_cols=234  Identities=18%  Similarity=0.287  Sum_probs=188.8

Q ss_pred             CCCCCeEEEEEcC-CC---eEEEecCCCeEEEEeccCCce--eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           1 MHRSPITHVVVTK-TD---FVITASNDGHIKFWKKQEEGI--EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~---~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      ||.++|.+++|.. +.   .+++++.|.++++|..+.+..  +.+...+||...|.++...+++..+++|+.|.++++|+
T Consensus       142 Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs  221 (423)
T KOG0313|consen  142 GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWS  221 (423)
T ss_pred             cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecc
Confidence            8999999998864 43   599999999999999876532  23334459999999999999999999999999999999


Q ss_pred             ccc-------------------------cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE
Q psy6859          75 VIN-------------------------FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM  129 (261)
Q Consensus        75 ~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  129 (261)
                      ..+                         +.++..+..|..++..+.+.+ .    ..+++++.|.+|+.||+.++..+..
T Consensus       222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~----~v~yS~SwDHTIk~WDletg~~~~~  296 (423)
T KOG0313|consen  222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A----TVIYSVSWDHTIKVWDLETGGLKST  296 (423)
T ss_pred             cCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C----CceEeecccceEEEEEeecccceee
Confidence            321                         112333445556666666655 2    3345569999999999999988888


Q ss_pred             EeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC---ccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCe
Q psy6859         130 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG---TPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGI  205 (261)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~  205 (261)
                      +..   +..+.++.++|...  ++++|+.|..+++||.+ ++   ...+++. +|++.|.++.|+|... .|++++.|++
T Consensus       297 ~~~---~ksl~~i~~~~~~~--Ll~~gssdr~irl~DPR-~~~gs~v~~s~~-gH~nwVssvkwsp~~~~~~~S~S~D~t  369 (423)
T KOG0313|consen  297 LTT---NKSLNCISYSPLSK--LLASGSSDRHIRLWDPR-TGDGSVVSQSLI-GHKNWVSSVKWSPTNEFQLVSGSYDNT  369 (423)
T ss_pred             eec---CcceeEeecccccc--eeeecCCCCceeecCCC-CCCCceeEEeee-cchhhhhheecCCCCceEEEEEecCCe
Confidence            775   34789999999775  48999999999999998 43   2345666 9999999999999776 5799999999


Q ss_pred             EEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         206 LEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       206 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +++||+++              +..+++.+.+|...|.++.|+. +.+|++||.|+
T Consensus       370 ~klWDvRS--------------~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~  410 (423)
T KOG0313|consen  370 VKLWDVRS--------------TKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADN  410 (423)
T ss_pred             EEEEEecc--------------CCCcceeeccCCceEEEEeccC-CceEEeccCcc
Confidence            99999974              3458999999999999999984 57899999985

>KOG0268|consensus

Probab=100.00  E-value=1.5e-34  Score=206.50  Aligned_cols=234  Identities=20%  Similarity=0.312  Sum_probs=186.0

Q ss_pred             CCCCCeEEEEEcCC--CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-
Q psy6859           1 MHRSPITHVVVTKT--DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-   77 (261)
Q Consensus         1 gH~~~v~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-   77 (261)
                      ||.+.|.|++=+|+  ..+++|+.||.|+|||+...  .+...+++|.+.|..|++..  ..+++++.|.+|+.|.+.- 
T Consensus        64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~  139 (433)
T KOG0268|consen   64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP  139 (433)
T ss_pred             ccccccchhhcCcchhhhhhccccCceEEEEehhhh--hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence            89999999999993  67999999999999999987  88999999999999999987  5789999999999887421 


Q ss_pred             -------------------------------------cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEE
Q psy6859          78 -------------------------------------FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD  120 (261)
Q Consensus        78 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d  120 (261)
                                                           ..++..+......+.++.++|....+++   ++..|+.|.+||
T Consensus       140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa---s~~sDrsIvLyD  216 (433)
T KOG0268|consen  140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA---SCASDRSIVLYD  216 (433)
T ss_pred             cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee---eeccCCceEEEe
Confidence                                                 1122222233333444444444443333   357999999999


Q ss_pred             cCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE
Q psy6859         121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV  200 (261)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  200 (261)
                      +++..+++.+....   ....++|+|+..  .++++++|..++.||++.-..++.... +|.+.|.++.|+|.|+.+++|
T Consensus       217 ~R~~~Pl~KVi~~m---RTN~IswnPeaf--nF~~a~ED~nlY~~DmR~l~~p~~v~~-dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  217 LRQASPLKKVILTM---RTNTICWNPEAF--NFVAANEDHNLYTYDMRNLSRPLNVHK-DHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             cccCCccceeeeec---cccceecCcccc--ceeeccccccceehhhhhhcccchhhc-ccceeEEEeccCCCcchhccc
Confidence            99999998887654   447889999664  388999999999999997778899998 999999999999999999999


Q ss_pred             cCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         201 DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       201 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +.|.+|+||.++.+             ..+.++-- .-...|.++.||-|.+++++||+|+
T Consensus       291 syDksIRIf~~~~~-------------~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  291 SYDKSIRIFPVNHG-------------HSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             cccceEEEeecCCC-------------cchhhhhH-hhhheeeEEEEeccccEEEecCCCc
Confidence            99999999998642             11222111 1235689999999999999999986

>KOG0281|consensus

Probab=100.00  E-value=6e-35  Score=208.06  Aligned_cols=221  Identities=14%  Similarity=0.237  Sum_probs=187.6

Q ss_pred             CCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           3 RSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         3 ~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      .+.|.|+.+.. +.+++|..|++|+|||..+.  .+.+.+.+|++.|.|+.|.  .+.+++|+.|.+|++||+++++++.
T Consensus       197 skgVYClQYDD-~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  197 SKGVYCLQYDD-EKIVSGLRDNTIKIWDKNSL--ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             CCceEEEEecc-hhhhcccccCceEEeccccH--HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence            35788998864 46899999999999999877  8889999999999999985  4599999999999999999999999


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce---eeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM---INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ++-.+...+..+.+  ....++++    +.|.++.+||+.....   .+.+.+  +...+..+.|+...    +++++.|
T Consensus       272 tlihHceaVLhlrf--~ng~mvtc----SkDrsiaVWdm~sps~it~rrVLvG--HrAaVNvVdfd~ky----IVsASgD  339 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRF--SNGYMVTC----SKDRSIAVWDMASPTDITLRRVLVG--HRAAVNVVDFDDKY----IVSASGD  339 (499)
T ss_pred             HHhhhcceeEEEEE--eCCEEEEe----cCCceeEEEeccCchHHHHHHHHhh--hhhheeeeccccce----EEEecCC
Confidence            88766655444443  45566665    9999999999986542   223333  55678888887763    8999999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      .+|++|++. +.+.++++. +|...|.++.+  .++++++|+.|.+|++||+               ..+.+++.+++|+
T Consensus       340 RTikvW~~s-t~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi---------------~~G~cLRvLeGHE  400 (499)
T KOG0281|consen  340 RTIKVWSTS-TCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDI---------------ECGACLRVLEGHE  400 (499)
T ss_pred             ceEEEEecc-ceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEec---------------cccHHHHHHhchH
Confidence            999999999 999999998 99999988887  5889999999999999999               4589999999999


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .-|.++.|  |.+.+++|+.||
T Consensus       401 eLvRciRF--d~krIVSGaYDG  420 (499)
T KOG0281|consen  401 ELVRCIRF--DNKRIVSGAYDG  420 (499)
T ss_pred             Hhhhheee--cCceeeeccccc
Confidence            99999999  567899999997

>KOG0283|consensus

Probab=100.00  E-value=3.4e-33  Score=218.67  Aligned_cols=233  Identities=16%  Similarity=0.247  Sum_probs=188.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC--------------------------------C-------------
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQE--------------------------------E-------------   34 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~--------------------------------~-------------   34 (261)
                      .|++.|+++.||+ |+|||+|+.|+.|+||.+.+                                .             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            4999999999999 99999999999999998765                                0             


Q ss_pred             -------------ceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecC-
Q psy6859          35 -------------GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLG-  100 (261)
Q Consensus        35 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-  100 (261)
                                   ..+++..|.+|.+.|..|.|+.++ +|++++.|.+||||++...++++.|. |..-++++.|+|.. 
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence                         013445678899999999999775 99999999999999999999999998 55668888888854 


Q ss_pred             CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec--
Q psy6859         101 DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD--  178 (261)
Q Consensus       101 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--  178 (261)
                      +++++    |+-|+.++||++...+...-...+   ..|++++|.|+|++  ++.|+.+|.+++|+.. ..++...+.  
T Consensus       423 ryFiS----GSLD~KvRiWsI~d~~Vv~W~Dl~---~lITAvcy~PdGk~--avIGt~~G~C~fY~t~-~lk~~~~~~I~  492 (712)
T KOG0283|consen  423 RYFIS----GSLDGKVRLWSISDKKVVDWNDLR---DLITAVCYSPDGKG--AVIGTFNGYCRFYDTE-GLKLVSDFHIR  492 (712)
T ss_pred             CcEee----cccccceEEeecCcCeeEeehhhh---hhheeEEeccCCce--EEEEEeccEEEEEEcc-CCeEEEeeeEe
Confidence            44544    599999999999988776666554   48999999999987  8899999999999998 655554442  


Q ss_pred             ------cCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc--cceeeeeECC
Q psy6859         179 ------RLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK--TYPSGLSFSP  249 (261)
Q Consensus       179 ------~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~  249 (261)
                            ..|. .|+++.|.|... .|++.+.|..|+|||.++               ...+..++++.  ..-....|+.
T Consensus       493 ~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~---------------~~lv~KfKG~~n~~SQ~~Asfs~  556 (712)
T KOG0283|consen  493 LHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD---------------KDLVHKFKGFRNTSSQISASFSS  556 (712)
T ss_pred             eccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc---------------hhhhhhhcccccCCcceeeeEcc
Confidence                  0123 799999998554 577778899999999853               56677777643  2345678999


Q ss_pred             CCceEEEeecCC
Q psy6859         250 DGNKFVTISMDR  261 (261)
Q Consensus       250 ~~~~l~s~~~Dg  261 (261)
                      ||++|+++++|.
T Consensus       557 Dgk~IVs~seDs  568 (712)
T KOG0283|consen  557 DGKHIVSASEDS  568 (712)
T ss_pred             CCCEEEEeecCc
Confidence            999999999873

>KOG0640|consensus

Probab=100.00  E-value=3e-33  Score=196.53  Aligned_cols=252  Identities=16%  Similarity=0.231  Sum_probs=205.6

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC----------------CceeeeEEeeccccceeEEEEeeCCCEEEEE
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQE----------------EGIEFVKHFRSHLGVIHSICTNYNGTLLCTV   64 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~   64 (261)
                      |+.++.+.+|+| |.++|+|+.|..|+|.|++.                ..-..++++..|..+|+++.|+|....|+++
T Consensus       111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~  190 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG  190 (430)
T ss_pred             cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence            899999999999 99999999999999999872                0124567888899999999999999999999


Q ss_pred             eCCCcEEEEEccccceeeeee--ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE-eecCCcceEEE
Q psy6859          65 ASDKAMKVFDVINFDMINMIK--LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI-KLDFTPLTVEC  141 (261)
Q Consensus        65 ~~dg~v~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~  141 (261)
                      ++|++|+++|+..-...+.++  ....++.++.++|.|++++..    .....+++||+++.++...- ....+...|++
T Consensus       191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg----TdHp~~rlYdv~T~QcfvsanPd~qht~ai~~  266 (430)
T KOG0640|consen  191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG----TDHPTLRLYDVNTYQCFVSANPDDQHTGAITQ  266 (430)
T ss_pred             cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe----cCCCceeEEeccceeEeeecCcccccccceeE
Confidence            999999999997654443333  355678899999999988887    88899999999988765443 23345668999


Q ss_pred             EEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcc-cCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC--
Q psy6859         142 IHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHT-KPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF--  218 (261)
Q Consensus       142 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--  218 (261)
                      +.+++.+.  +.++++.||.|++||-- .++++.++...|. ..|.+..|..+++|+++.+.|..+++|.+.++....  
T Consensus       267 V~Ys~t~~--lYvTaSkDG~IklwDGV-S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  267 VRYSSTGS--LYVTASKDGAIKLWDGV-SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             EEecCCcc--EEEEeccCCcEEeeccc-cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            99999997  48999999999999988 8899999975664 579999999999999999999999999987753210  


Q ss_pred             --------------------------C-----eeeeeecccccceeec-CCCccceeeeeECCCCceEEEeecC
Q psy6859         219 --------------------------P-----KCVHFESKLDTDLFEF-AKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       219 --------------------------~-----~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                                                |     +...|+.++...+..+ .+|.+.++.+.-||.+.-+++||.|
T Consensus       344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD  417 (430)
T KOG0640|consen  344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD  417 (430)
T ss_pred             ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccc
Confidence                                      1     1123444444443333 3699999999999999999999988

>KOG1407|consensus

Probab=100.00  E-value=3.4e-32  Score=186.61  Aligned_cols=231  Identities=14%  Similarity=0.187  Sum_probs=196.3

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ||.+.|-.++|+|  .+.+++++.|.+|++||....  ++........+. .-+.|+|+|++++.++.|..|.+.|.++.
T Consensus        62 gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~--k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~  138 (313)
T KOG1407|consen   62 GHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG--KCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTY  138 (313)
T ss_pred             CCCcchhhheeCCCCCcceEEecCCceEEEEEeccC--cEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEeccc
Confidence            7999999999998  679999999999999999987  677666544344 45789999999999999999999999998


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      +.+...+.......+.+ +.+++.++..    ...|.|.|.....-+++..++.  |+..+.|+.|+|++++  +++|+.
T Consensus       139 ~~~~~~~~~~e~ne~~w-~~~nd~Fflt----~GlG~v~ILsypsLkpv~si~A--H~snCicI~f~p~Gry--fA~GsA  209 (313)
T KOG1407|consen  139 KIVNEEQFKFEVNEISW-NNSNDLFFLT----NGLGCVEILSYPSLKPVQSIKA--HPSNCICIEFDPDGRY--FATGSA  209 (313)
T ss_pred             ceeehhcccceeeeeee-cCCCCEEEEe----cCCceEEEEecccccccccccc--CCcceEEEEECCCCce--Eeeccc
Confidence            88887765555444444 4555655554    6789999999998888888876  5678899999999998  999999


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN  238 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (261)
                      |..+.+||+. .--+++.+. .++-+|..+.|+.+|++||++++|..|-|=+++               ++..+.+++ +
T Consensus       210 DAlvSLWD~~-ELiC~R~is-RldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve---------------tGd~~~eI~-~  271 (313)
T KOG1407|consen  210 DALVSLWDVD-ELICERCIS-RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE---------------TGDRVWEIP-C  271 (313)
T ss_pred             cceeeccChh-Hhhhheeec-cccCceEEEEeccCcceeeccCccceEEeEecc---------------cCCeEEEee-c
Confidence            9999999998 778889997 899999999999999999999999999888884               466777665 6


Q ss_pred             ccceeeeeECCCCceEEEeecCC
Q psy6859         239 KTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       239 ~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .++...++|+|...+||-+++|+
T Consensus       272 ~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  272 EGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             cCCceeEEecCCCceeeEEecCC
Confidence            88889999999999999998874

>KOG0292|consensus

Probab=100.00  E-value=3.9e-33  Score=219.76  Aligned_cols=235  Identities=17%  Similarity=0.256  Sum_probs=206.9

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      +..|..++|+| ...++++-..|.|++||..-.  .++..|..|.++|..+.|+|+..++++|+.|-.|++|+..+.+++
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl   86 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL   86 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhh--hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence            46788999999 789999999999999999876  888999999999999999999999999999999999999999999


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      .++..|..-+..+.+++.-.+++++    |.|.+|+||+..+++++..+.+|.|  .|.|.+|+|....  +++++-|.+
T Consensus        87 ftL~GHlDYVRt~~FHheyPWIlSA----SDDQTIrIWNwqsr~~iavltGHnH--YVMcAqFhptEDl--IVSaSLDQT  158 (1202)
T KOG0292|consen   87 FTLLGHLDYVRTVFFHHEYPWILSA----SDDQTIRIWNWQSRKCIAVLTGHNH--YVMCAQFHPTEDL--IVSASLDQT  158 (1202)
T ss_pred             hhhccccceeEEeeccCCCceEEEc----cCCCeEEEEeccCCceEEEEecCce--EEEeeccCCccce--EEEecccce
Confidence            9999888888888888888888877    9999999999999999999998654  8999999997753  999999999


Q ss_pred             EEEEEccCC-------C---------------------ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         162 VHIYDCKGN-------G---------------------TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       162 i~i~d~~~~-------~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      |++||+..-       +                     -..+.++ +|...|+-++|+|.-.++++|+.|..|++|.+..
T Consensus       159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE-GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE-GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec-ccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence            999998520       0                     0112344 8999999999999999999999999999999864


Q ss_pred             ccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         214 QEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                   .....+-+..+|.+.|.++-|+|...++++.|+|+
T Consensus       238 -------------tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk  272 (1202)
T KOG0292|consen  238 -------------TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK  272 (1202)
T ss_pred             -------------ccceeehhhhcccCCcceEEecCccceeEecCCCc
Confidence                         22344566789999999999999999999999996

>KOG0285|consensus

Probab=100.00  E-value=1.2e-32  Score=196.74  Aligned_cols=235  Identities=16%  Similarity=0.237  Sum_probs=202.0

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||...|..+++|+ -.|+++++.|+.|+.||++..  +.++.+.+|-+.|.+++..|.-..|++|++|.++++||+++..
T Consensus       191 Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~  268 (460)
T KOG0285|consen  191 GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA  268 (460)
T ss_pred             chhheeeeeeecccCceEEEecCCCeeEEEechhh--hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc
Confidence            7999999999999 889999999999999999988  8999999999999999999988899999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+..+..+..++..+.+.+...+++++    +.|++|++||++.++....+..  +...+++++.+|....  +++++. 
T Consensus       269 ~V~~l~GH~~~V~~V~~~~~dpqvit~----S~D~tvrlWDl~agkt~~tlt~--hkksvral~lhP~e~~--fASas~-  339 (460)
T KOG0285|consen  269 SVHVLSGHTNPVASVMCQPTDPQVITG----SHDSTVRLWDLRAGKTMITLTH--HKKSVRALCLHPKENL--FASASP-  339 (460)
T ss_pred             eEEEecCCCCcceeEEeecCCCceEEe----cCCceEEEeeeccCceeEeeec--ccceeeEEecCCchhh--hhccCC-
Confidence            999999999888888888777777776    9999999999999987777765  4558899999999864  777774 


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC---
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA---  236 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---  236 (261)
                      ..|+-|++. .+..+..+. +|+.-|++++.+.|+ ++++|+++|.+.+||.+++-.            .+......   
T Consensus       340 dnik~w~~p-~g~f~~nls-gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n------------yQ~~~t~vqpG  404 (460)
T KOG0285|consen  340 DNIKQWKLP-EGEFLQNLS-GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN------------YQRGQTIVQPG  404 (460)
T ss_pred             ccceeccCC-ccchhhccc-cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc------------cccccccccCC
Confidence            569999999 888898887 999999999998886 688899999999999976410            11111111   


Q ss_pred             --CCccceeeeeECCCCceEEEeecCC
Q psy6859         237 --KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 --~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                        ..+..|.+.+|...|..|++|..|+
T Consensus       405 Sl~sEagI~as~fDktg~rlit~eadK  431 (460)
T KOG0285|consen  405 SLESEAGIFASCFDKTGSRLITGEADK  431 (460)
T ss_pred             ccccccceeEEeecccCceEEeccCCc
Confidence              1356789999999999999998874

>KOG0647|consensus

Probab=100.00  E-value=7.4e-32  Score=188.47  Aligned_cols=233  Identities=17%  Similarity=0.254  Sum_probs=177.3

Q ss_pred             CCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           3 RSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         3 ~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      .+.|.+|+|||  ..+++++|-||+||+|+++..+...-+....|.++|.+++|+.||..+++|+.|+.+++||+.+++.
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~  106 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV  106 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence            46799999999  5577799999999999998743233355567999999999999999999999999999999999954


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC-------------------------
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT-------------------------  135 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~-------------------------  135 (261)
                      . .+..|..++..+.+-+...  ..++++|+.|++|+.||++...++..+.++..                         
T Consensus       107 ~-~v~~Hd~pvkt~~wv~~~~--~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL  183 (347)
T KOG0647|consen  107 S-QVAAHDAPVKTCHWVPGMN--YQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL  183 (347)
T ss_pred             e-eeeecccceeEEEEecCCC--cceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence            4 4455666655554443332  45556789999999999998877666633210                         


Q ss_pred             --------------cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC--ccceeeccCcc---------cCeEEEEE
Q psy6859         136 --------------PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG--TPLHVLDRLHT---------KPVVLIKF  190 (261)
Q Consensus       136 --------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~---------~~v~~~~~  190 (261)
                                    .-.++|++..++...  .+.|+-+|.+.+..+. .+  +.-..|+ .|.         ..|++|+|
T Consensus       184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~--~alGsiEGrv~iq~id-~~~~~~nFtFk-CHR~~~~~~~~VYaVNsi~F  259 (347)
T KOG0647|consen  184 ENPPTEFKRIESPLKWQTRCVACFQDKDG--FALGSIEGRVAIQYID-DPNPKDNFTFK-CHRSTNSVNDDVYAVNSIAF  259 (347)
T ss_pred             CCCcchhhhhcCcccceeeEEEEEecCCc--eEeeeecceEEEEecC-CCCccCceeEE-EeccCCCCCCceEEecceEe
Confidence                          114567777666654  5667778888888877 44  2333443 443         35788999


Q ss_pred             cCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEe
Q psy6859         191 NPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       191 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  257 (261)
                      +|.-..|++++.||++.+||-+.               ...++..+.|..+|++..|+.+|.++|-+
T Consensus       260 hP~hgtlvTaGsDGtf~FWDkda---------------r~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  260 HPVHGTLVTAGSDGTFSFWDKDA---------------RTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ecccceEEEecCCceEEEecchh---------------hhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            99999999999999999999743               45667777899999999999999998865

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=5.2e-31  Score=208.24  Aligned_cols=230  Identities=15%  Similarity=0.146  Sum_probs=168.6

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCce------eeeEEeeccccceeEEEEeeCCCE-EEEEeCCCcEE
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGI------EFVKHFRSHLGVIHSICTNYNGTL-LCTVASDKAMK   71 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~v~   71 (261)
                      ||.++|.+++|+|  +++|++|+.|++|+||++.+.+.      .++..+.+|...|.+++|+|++.. +++++.|++|+
T Consensus        72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr  151 (568)
T PTZ00420         72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN  151 (568)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence            7999999999999  57999999999999999975321      234567899999999999998875 57889999999


Q ss_pred             EEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceE---EEEEEeCCC
Q psy6859          72 VFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTV---ECIHYLGDA  148 (261)
Q Consensus        72 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  148 (261)
                      +||+.+++.+..+.. ...+..+.+++++..+++.    +.|+.|++||+++++.+..+..+......   ....|++++
T Consensus       152 IWDl~tg~~~~~i~~-~~~V~SlswspdG~lLat~----s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~  226 (568)
T PTZ00420        152 IWDIENEKRAFQINM-PKKLSSLKWNIKGNLLSGT----CVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD  226 (568)
T ss_pred             EEECCCCcEEEEEec-CCcEEEEEECCCCCEEEEE----ecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence            999999887776653 3557778888888877655    78999999999999988888765433222   223455777


Q ss_pred             CceEEEEecCC----CeEEEEEccCCCccceeec-cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeee
Q psy6859         149 IPTAAVSDQDS----SHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVH  223 (261)
Q Consensus       149 ~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  223 (261)
                      .+  +++++.+    +.|+|||++...+++..+. ..+.+.+......+++.++++|+.|+.|++|++..+.        
T Consensus       227 ~~--IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~--------  296 (568)
T PTZ00420        227 NY--ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS--------  296 (568)
T ss_pred             CE--EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc--------
Confidence            64  5554444    4799999995467776664 0222333333345568889999999999999985421        


Q ss_pred             eecccccceeecCCCccceeeeeECCCC
Q psy6859         224 FESKLDTDLFEFAKNKTYPSGLSFSPDG  251 (261)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~  251 (261)
                           ...+..+. +..++.+++|.|..
T Consensus       297 -----~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        297 -----IRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             -----EEeecccc-cCCCccceEEcccc
Confidence                 11122222 55677788888853

>KOG0278|consensus

Probab=100.00  E-value=1.3e-33  Score=192.73  Aligned_cols=230  Identities=16%  Similarity=0.181  Sum_probs=195.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||++.|++...+. ....|+++.|-+.++||.-++  ..+..|. |..-|..++|+.|.++|++|+.+..+|+||++..+
T Consensus        57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tg--delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~  133 (334)
T KOG0278|consen   57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG--DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK  133 (334)
T ss_pred             ccCcceeeeecCchhhhhhhhcccchhhhhhhhhh--hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence            8999999999988 567889999999999999887  6777776 88899999999999999999999999999998654


Q ss_pred             -eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          80 -MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                       +..++..+...+.-+.+....+.+++.    +.|++|++||.+++..++.+....   .+.++..++++.   +++-..
T Consensus       134 App~E~~ghtg~Ir~v~wc~eD~~iLSS----add~tVRLWD~rTgt~v~sL~~~s---~VtSlEvs~dG~---ilTia~  203 (334)
T KOG0278|consen  134 APPKEISGHTGGIRTVLWCHEDKCILSS----ADDKTVRLWDHRTGTEVQSLEFNS---PVTSLEVSQDGR---ILTIAY  203 (334)
T ss_pred             CCchhhcCCCCcceeEEEeccCceEEee----ccCCceEEEEeccCcEEEEEecCC---CCcceeeccCCC---EEEEec
Confidence             445555555555555555555556555    799999999999999999998654   678999999998   444455


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec-CC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF-AK  237 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~  237 (261)
                      .+.|.+||.. +..+++.++  ....|.+..++|+...+++|++|..++.||..+               ++.+..+ ++
T Consensus       204 gssV~Fwdak-sf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T---------------geEi~~~nkg  265 (334)
T KOG0278|consen  204 GSSVKFWDAK-SFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT---------------GEEIGSYNKG  265 (334)
T ss_pred             CceeEEeccc-cccceeecc--CccccccccccCCCceEEecCcceEEEEEeccC---------------CceeeecccC
Confidence            7789999999 888999885  677899999999999999999999999999854               6666665 88


Q ss_pred             CccceeeeeECCCCceEEEeecCC
Q psy6859         238 NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |-++|.++.|+|||...|+||+||
T Consensus       266 h~gpVhcVrFSPdGE~yAsGSEDG  289 (334)
T KOG0278|consen  266 HFGPVHCVRFSPDGELYASGSEDG  289 (334)
T ss_pred             CCCceEEEEECCCCceeeccCCCc
Confidence            999999999999999999999997

>KOG0289|consensus

Probab=100.00  E-value=1.2e-31  Score=195.79  Aligned_cols=232  Identities=17%  Similarity=0.214  Sum_probs=204.3

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      ..++++...| ...+++|+.|..+.++|...+  +.+..++||+..|+.+.++|+...+++++.|..|++|.........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~  297 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN--QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT  297 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchh--hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc
Confidence            4577888888 588999999999999999887  8899999999999999999999999999999999999998777777


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeE
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV  162 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  162 (261)
                      ....+..++.....++.+++++..    +.|++..+.|++++..+...........+.+.+|+||+.  ++.+|..|+.+
T Consensus       298 ~~~~h~~~V~~ls~h~tgeYllsA----s~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifgtgt~d~~v  371 (506)
T KOG0289|consen  298 SSRPHEEPVTGLSLHPTGEYLLSA----SNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFGTGTPDGVV  371 (506)
T ss_pred             ccccccccceeeeeccCCcEEEEe----cCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEeccCCCceE
Confidence            777788889999999999999988    999999999999999888877655556799999999994  68999999999


Q ss_pred             EEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC-Cccc
Q psy6859         163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-NKTY  241 (261)
Q Consensus       163 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  241 (261)
                      +|||+. .+..+..|. +|.++|..++|+.+|-+|++++.|+.|++||++.               .+...++.- ....
T Consensus       372 kiwdlk-s~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRK---------------l~n~kt~~l~~~~~  434 (506)
T KOG0289|consen  372 KIWDLK-SQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRK---------------LKNFKTIQLDEKKE  434 (506)
T ss_pred             EEEEcC-CccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehh---------------hcccceeecccccc
Confidence            999999 778899998 9999999999999999999999999999999963               233333332 2337


Q ss_pred             eeeeeECCCCceEEEeecC
Q psy6859         242 PSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       242 v~~~~~s~~~~~l~s~~~D  260 (261)
                      +.++.|.+.|.+|+.+|.|
T Consensus       435 v~s~~fD~SGt~L~~~g~~  453 (506)
T KOG0289|consen  435 VNSLSFDQSGTYLGIAGSD  453 (506)
T ss_pred             ceeEEEcCCCCeEEeecce
Confidence            8999999999999998865

>KOG0316|consensus

Probab=100.00  E-value=9.8e-32  Score=181.96  Aligned_cols=227  Identities=15%  Similarity=0.240  Sum_probs=187.3

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-   78 (261)
                      ||-..|..++.+. +..+++|+.|..+.+||++++  +..+.+++|.+.|+.++|+.+...+++|+.|.++++||.++. 
T Consensus        57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s  134 (307)
T KOG0316|consen   57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS  134 (307)
T ss_pred             CCCceeeeccccccccccccCCCCceEEEEEcccC--eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC
Confidence            6888999999988 789999999999999999998  999999999999999999999999999999999999999865 


Q ss_pred             -ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          79 -DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                       ++++.+....  ..+..+.-.+..+++.    +.||+++.||++.++....+    ...+|+++.|++++..  .+.++
T Consensus       135 ~ePiQildea~--D~V~Si~v~~heIvaG----S~DGtvRtydiR~G~l~sDy----~g~pit~vs~s~d~nc--~La~~  202 (307)
T KOG0316|consen  135 FEPIQILDEAK--DGVSSIDVAEHEIVAG----SVDGTVRTYDIRKGTLSSDY----FGHPITSVSFSKDGNC--SLASS  202 (307)
T ss_pred             CCccchhhhhc--CceeEEEecccEEEee----ccCCcEEEEEeecceeehhh----cCCcceeEEecCCCCE--EEEee
Confidence             4555554333  3344454556666666    99999999999998754443    3347899999999986  66778


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEE--EEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVL--IKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF  235 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
                      .|+++++.|-. ++++++.++ +|.+.-..  .+++.....+++|++||.+.+||+.+               ...+..+
T Consensus       203 l~stlrLlDk~-tGklL~sYk-Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd---------------~~~~sk~  265 (307)
T KOG0316|consen  203 LDSTLRLLDKE-TGKLLKSYK-GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD---------------ETQISKL  265 (307)
T ss_pred             ccceeeecccc-hhHHHHHhc-ccccceeeeeeeecccceeEEeccCCceEEEEEecc---------------ceeeeee
Confidence            89999999998 999999998 88776544  46777777999999999999999954               5667777


Q ss_pred             CCCccc-eeeeeECCCCceEEEee
Q psy6859         236 AKNKTY-PSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       236 ~~~~~~-v~~~~~s~~~~~l~s~~  258 (261)
                      ..+... |.++.++|.-..|+++.
T Consensus       266 ~~~~~v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  266 SVVSTVIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             ccCCceeEEeeecccCccceeEec
Confidence            777776 89999999776666554

>KOG0973|consensus

Probab=100.00  E-value=1.7e-31  Score=214.30  Aligned_cols=239  Identities=18%  Similarity=0.291  Sum_probs=199.9

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC----------------CceeeeEEeeccccceeEEEEeeCCCEEEEE
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQE----------------EGIEFVKHFRSHLGVIHSICTNYNGTLLCTV   64 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~   64 (261)
                      |.++|+|+.|+| |++||+|+.|+.|.||+...                ..++....+.+|.+.|..++|+|++.+++++
T Consensus        68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~  147 (942)
T KOG0973|consen   68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV  147 (942)
T ss_pred             ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe
Confidence            889999999999 99999999999999999872                0145778899999999999999999999999


Q ss_pred             eCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC----cceEE
Q psy6859          65 ASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT----PLTVE  140 (261)
Q Consensus        65 ~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~  140 (261)
                      +.|++|.+|+..+.+.++.+..|...+..+.+.|-|+++++-    +.|++|++|++.+....+.+..++.    ...+.
T Consensus       148 s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASq----sdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~  223 (942)
T KOG0973|consen  148 SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQ----SDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL  223 (942)
T ss_pred             cccceEEEEccccceeeeeeecccccccceEECCccCeeeee----cCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence            999999999999999999999999889999999999999998    9999999999888777777655433    23678


Q ss_pred             EEEEeCCCCceEEEEe--cCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCC------C-------C----EEEEEc
Q psy6859         141 CIHYLGDAIPTAAVSD--QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPI------Y-------Q----VVVSVD  201 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~------~-------~----~l~~~~  201 (261)
                      .+.|+||+.++...-+  +.-..+.|.+.. +.+.-..+- +|..++..++|+|.      .       .    .+|+|+
T Consensus       224 RlSWSPDG~~las~nA~n~~~~~~~IieR~-tWk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS  301 (942)
T KOG0973|consen  224 RLSWSPDGHHLASPNAVNGGKSTIAIIERG-TWKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS  301 (942)
T ss_pred             ecccCCCcCeecchhhccCCcceeEEEecC-Cceeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence            8999999997322222  223458888876 777667776 99999999999982      1       1    568999


Q ss_pred             CCCeEEEeecccccccCCeeeeeecccccceeecCC-CccceeeeeECCCCceEEEeecCC
Q psy6859         202 KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       202 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .|++|.||..               ...+++..... ....|.+++|+|||..|+.+|.||
T Consensus       302 qDrSlSVW~T---------------~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG  347 (942)
T KOG0973|consen  302 QDRSLSVWNT---------------ALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG  347 (942)
T ss_pred             CCccEEEEec---------------CCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence            9999999997               33556554443 567899999999999999999997

>KOG0319|consensus

Probab=100.00  E-value=7.6e-32  Score=208.35  Aligned_cols=236  Identities=15%  Similarity=0.169  Sum_probs=195.1

Q ss_pred             CCCCCeEEEEEc-C-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVT-K-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~-~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      |..+.|..+.|- | .+++|.+++.+.+++++..+.  .+ ..+.+|+..|.++....+|-+|++|+.|.++++|.++++
T Consensus       321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c-~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~  397 (775)
T KOG0319|consen  321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YC-QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN  397 (775)
T ss_pred             CCchhheeeeecCCccceEEEEeCCCceEEEecCCC--ce-EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence            556789999987 4 789999999999999988875  23 378999999999997677789999999999999988544


Q ss_pred             c----eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce---eeEE----eecCCcceEEEEEEeCC
Q psy6859          79 D----MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM---INMI----KLDFTPLTVECIHYLGD  147 (261)
Q Consensus        79 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---~~~~----~~~~~~~~~~~~~~~~~  147 (261)
                      .    ++.....+.+.+..+..+..+.   ..+++++.|.++++|++...+.   ...+    ....|...|.+++++|+
T Consensus       398 ~~~~~~~a~~~gH~~svgava~~~~~a---sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n  474 (775)
T KOG0319|consen  398 CSKSLCVAQANGHTNSVGAVAGSKLGA---SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN  474 (775)
T ss_pred             cchhhhhhhhcccccccceeeecccCc---cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence            3    3334445555566666643333   3344569999999999986321   1111    22345668999999999


Q ss_pred             CCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecc
Q psy6859         148 AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESK  227 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  227 (261)
                      ..  ++++|+.|.+.+||++. ....+.++. +|...|.++.|+|..+.+|+++.|++|+||.+.               
T Consensus       475 dk--LiAT~SqDktaKiW~le-~~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is---------------  535 (775)
T KOG0319|consen  475 DK--LIATGSQDKTAKIWDLE-QLRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS---------------  535 (775)
T ss_pred             Cc--eEEecccccceeeeccc-CceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEec---------------
Confidence            96  49999999999999999 889999998 999999999999999999999999999999994               


Q ss_pred             cccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         228 LDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       228 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +..+++++.||...|..+.|-.+|+.|++|+.||
T Consensus       536 ~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG  569 (775)
T KOG0319|consen  536 TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG  569 (775)
T ss_pred             cceeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence            4899999999999999999999999999999997

>KOG0275|consensus

Probab=100.00  E-value=1.1e-32  Score=195.12  Aligned_cols=237  Identities=14%  Similarity=0.208  Sum_probs=211.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      +|.++|.|+.|+. .+.+|+|+.||.|++|.+.++  .+++.|. .|+..|+++.|+.|+..+++++.|.++++.-+.+|
T Consensus       261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG--~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG  338 (508)
T KOG0275|consen  261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG--QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG  338 (508)
T ss_pred             ecccceEEEeecccHHHhhccCcCCcEEEEEEecc--hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence            5789999999999 789999999999999999998  8888886 89999999999999999999999999999999999


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ++++++..+..-+....+.++|..++++    +.||+|++|+.++.+++.+++.......+..+...|..... ++.+..
T Consensus       339 K~LKEfrGHsSyvn~a~ft~dG~~iisa----SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh-~iVCNr  413 (508)
T KOG0275|consen  339 KCLKEFRGHSSYVNEATFTDDGHHIISA----SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH-FIVCNR  413 (508)
T ss_pred             hhHHHhcCccccccceEEcCCCCeEEEe----cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce-EEEEcC
Confidence            9999999998888889999999999888    99999999999999999999887777788888888877654 556667


Q ss_pred             CCeEEEEEccCCCccceeeccC--cccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRL--HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      .+++++.++  .++.++.+..+  ..+...+.+.+|.|.+++..++|+.++.|.+.               +++..+.+.
T Consensus       414 sntv~imn~--qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~---------------sG~LE~tl~  476 (508)
T KOG0275|consen  414 SNTVYIMNM--QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVL---------------SGKLERTLP  476 (508)
T ss_pred             CCeEEEEec--cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEee---------------cCceeeeee
Confidence            899999998  57888888621  23455667899999999999999999999984               477888888


Q ss_pred             CCccceeeeeECCCCceEEEeecCC
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .|+..|..++-+|..+.||+=++||
T Consensus       477 VhEkdvIGl~HHPHqNllAsYsEDg  501 (508)
T KOG0275|consen  477 VHEKDVIGLTHHPHQNLLASYSEDG  501 (508)
T ss_pred             cccccccccccCcccchhhhhcccc
Confidence            9999999999999999999999886

>KOG0288|consensus

Probab=100.00  E-value=3.7e-32  Score=197.24  Aligned_cols=228  Identities=14%  Similarity=0.201  Sum_probs=187.0

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      .++|++++|.+ +.++++++.|+.+++|+++..  +...++.+|++.|+++.|......+++++.|.++++||+....+.
T Consensus       219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~  296 (459)
T KOG0288|consen  219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS  296 (459)
T ss_pred             CCCcceeeecCCCceEEeecCCCceeeeeccch--hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence            46799999998 899999999999999999987  888999999999999999887767999999999999999988777


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      +++-....-. .+...  .    ...+||-.|++|++||+++..+...+....   .+.++..++++..  +.+++.|.+
T Consensus       297 kt~l~~S~cn-DI~~~--~----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~--lLsssRDdt  364 (459)
T KOG0288|consen  297 KTVLPGSQCN-DIVCS--I----SDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLE--LLSSSRDDT  364 (459)
T ss_pred             cccccccccc-ceEec--c----eeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeE--EeeecCCCc
Confidence            7654332211 11111  1    334566889999999999999888887653   8899999999976  677789999


Q ss_pred             EEEEEccCCCccceeeccC----cccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         162 VHIYDCKGNGTPLHVLDRL----HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      +.+.|++ +......+. +    .....+.+.|||++.|+++|+.||.|+||++.               ++++...+..
T Consensus       365 l~viDlR-t~eI~~~~s-A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~---------------tgKlE~~l~~  427 (459)
T KOG0288|consen  365 LKVIDLR-TKEIRQTFS-AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF---------------TGKLEKVLSL  427 (459)
T ss_pred             eeeeecc-cccEEEEee-ccccccccccceeEECCCCceeeeccCCCcEEEEEcc---------------CceEEEEecc
Confidence            9999999 777777665 2    12347889999999999999999999999994               4666666665


Q ss_pred             Ccc--ceeeeeECCCCceEEEeecCC
Q psy6859         238 NKT--YPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~--~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ...  .|++++|+|.|..|++++.++
T Consensus       428 s~s~~aI~s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  428 STSNAAITSLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             CCCCcceEEEEEcCCCchhhcccCCc
Confidence            333  599999999999999988764

>KOG0310|consensus

Probab=100.00  E-value=3.7e-31  Score=195.67  Aligned_cols=231  Identities=15%  Similarity=0.183  Sum_probs=189.9

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccccce
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      ++.|.++.|-. |.++|+|...|.|+|+|..+.  ..++.+++|+.+|..+.|+| +++.+++|+.|+.+++||+.+...
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v  145 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV  145 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence            46788999988 999999999999999996654  67888999999999999998 566788889999999999988876


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ...+..+...+.+..+.+....+   .++|+.||.|++||++.. ..+..+.   +..+|..+.+.|.+..  +++++ .
T Consensus       146 ~~~l~~htDYVR~g~~~~~~~hi---vvtGsYDg~vrl~DtR~~~~~v~eln---hg~pVe~vl~lpsgs~--iasAg-G  216 (487)
T KOG0310|consen  146 QAELSGHTDYVRCGDISPANDHI---VVTGSYDGKVRLWDTRSLTSRVVELN---HGCPVESVLALPSGSL--IASAG-G  216 (487)
T ss_pred             EEEecCCcceeEeeccccCCCeE---EEecCCCceEEEEEeccCCceeEEec---CCCceeeEEEcCCCCE--EEEcC-C
Confidence            55666777777777777765533   345799999999999987 4455554   4558899999999864  66665 5


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      +.+++||+...++.+..+. .|...|+|+++..++..|++++-|+.+++||+.+               .+.+..+. ..
T Consensus       217 n~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~---------------~Kvv~s~~-~~  279 (487)
T KOG0310|consen  217 NSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN---------------YKVVHSWK-YP  279 (487)
T ss_pred             CeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccc---------------eEEEEeee-cc
Confidence            7899999984456666665 6999999999999999999999999999999743               45555554 57


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++|.+++.+|+++.++.|..||
T Consensus       280 ~pvLsiavs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  280 GPVLSIAVSPDDQTVVIGMSNG  301 (487)
T ss_pred             cceeeEEecCCCceEEEecccc
Confidence            8999999999999999998876

>KOG1332|consensus

Probab=100.00  E-value=8.3e-32  Score=183.09  Aligned_cols=245  Identities=14%  Similarity=0.169  Sum_probs=185.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCce-eeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEcc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGI-EFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~   76 (261)
                      +|.+.|..+...- +..|||++.|++|+|+.+...+. .++.++.+|.++|..++|..  -|.+|++++.||.|.||.-.
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~   88 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE   88 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence            4888888888777 89999999999999999988654 78899999999999999975  79999999999999999988


Q ss_pred             ccceeeee--eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCc---
Q psy6859          77 NFDMINMI--KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIP---  150 (261)
Q Consensus        77 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---  150 (261)
                      +++..+..  ..+...+..+.+.|++-.+  .+++++.||.|.+++.+.. .-........++..+.++++.|-...   
T Consensus        89 ~g~w~k~~e~~~h~~SVNsV~wapheygl--~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   89 NGRWTKAYEHAAHSASVNSVAWAPHEYGL--LLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             CCchhhhhhhhhhcccceeecccccccce--EEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            77544433  3445556666666654333  2344589999999998765 32222223346667888888776211   


Q ss_pred             ---------eEEEEecCCCeEEEEEccCCC--ccceeeccCcccCeEEEEEcCCC----CEEEEEcCCCeEEEeeccccc
Q psy6859         151 ---------TAAVSDQDSSHVHIYDCKGNG--TPLHVLDRLHTKPVVLIKFNPIY----QVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       151 ---------~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~  215 (261)
                               .-+++|+.|+.|+||+.. .+  +.-+.++ +|...|+.++|.|.-    .+||+++.||++.||..+.. 
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~-~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-  243 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFD-SDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-  243 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecC-Ccchhhhhhhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc-
Confidence                     127899999999999997 43  3344577 999999999999964    38999999999999987521 


Q ss_pred             ccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         216 FKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +           .......++.....++.+.||+.|+.|+.++.|+
T Consensus       244 ~-----------e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN  278 (299)
T KOG1332|consen  244 Y-----------EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN  278 (299)
T ss_pred             c-----------CcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence            0           1112223344567899999999999999988774

>KOG0299|consensus

Probab=100.00  E-value=6.8e-31  Score=193.02  Aligned_cols=232  Identities=16%  Similarity=0.260  Sum_probs=187.8

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|.+.|.+++.++ +++|++|+.|..|.||+.++.  +.++.+.+|.+.|.+++|-.....+++++.|+.+++|+++...
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s  277 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS  277 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence            5889999999999 999999999999999999988  8888999999999999999888899999999999999999888


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+.++-.+...+..+....-+ ..+++   |+.|+++++|++.... ...+..  +...+.|++|-.+..   +++|+++
T Consensus       278 ~vetlyGHqd~v~~IdaL~re-R~vtV---GgrDrT~rlwKi~ees-qlifrg--~~~sidcv~~In~~H---fvsGSdn  347 (479)
T KOG0299|consen  278 YVETLYGHQDGVLGIDALSRE-RCVTV---GGRDRTVRLWKIPEES-QLIFRG--GEGSIDCVAFINDEH---FVSGSDN  347 (479)
T ss_pred             HHHHHhCCccceeeechhccc-ceEEe---ccccceeEEEeccccc-eeeeeC--CCCCeeeEEEecccc---eeeccCC
Confidence            888877666555444443333 33343   4799999999995442 223332  345788999988887   8999999


Q ss_pred             CeEEEEEccCCCccceeeccCc-----------ccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLH-----------TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKL  228 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  228 (261)
                      |.|.+|++. ..+++.+...+|           +.+|++++..|...++++|+.+|.|++|-+.++.           +.
T Consensus       348 G~IaLWs~~-KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~-----------r~  415 (479)
T KOG0299|consen  348 GSIALWSLL-KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL-----------RA  415 (479)
T ss_pred             ceEEEeeec-ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc-----------cc
Confidence            999999998 788887665233           2389999999999999999999999999987541           22


Q ss_pred             ccceeecCCCccceeeeeECCCCceEEEe
Q psy6859         229 DTDLFEFAKNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       229 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  257 (261)
                      -+++..+. -.+.|++++|+++|+.|++|
T Consensus       416 i~~l~~ls-~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  416 INLLYSLS-LVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             cceeeecc-cccEEEEEEEccCCCEEEEe
Confidence            34555555 57899999999999977665

>KOG0264|consensus

Probab=100.00  E-value=4.9e-31  Score=193.39  Aligned_cols=253  Identities=15%  Similarity=0.183  Sum_probs=191.9

Q ss_pred             CCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCce--------eeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcE
Q psy6859           2 HRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGI--------EFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAM   70 (261)
Q Consensus         2 H~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v   70 (261)
                      |.+.|+.+.+.|  ..++|+.+..+.+.|||..+...        .+-..+.+|++.=.+++|++. .-.|++++.|++|
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i  202 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI  202 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence            788999999999  46888899999999999876321        233478899987889999983 3479999999999


Q ss_pred             EEEEccccce-------eeeeeccCcceeEEEEeecC-CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEE
Q psy6859          71 KVFDVINFDM-------INMIKLDFTPLTVECIHYLG-DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECI  142 (261)
Q Consensus        71 ~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  142 (261)
                      .+||+.....       ...+..+...+..+.+++.. +.+.++    +.|+.+.|||+|++..........+...+.|+
T Consensus       203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv----~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~  278 (422)
T KOG0264|consen  203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV----GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV  278 (422)
T ss_pred             EEEeccccccCCccccceEEeecCCcceehhhccccchhhheee----cCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence            9999975432       33445566666667776644 444444    89999999999964222233334467789999


Q ss_pred             EEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCee
Q psy6859         143 HYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKC  221 (261)
Q Consensus       143 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  221 (261)
                      +|+|-+.+ ++++|+.|++|++||+|+-.+++..++ +|+..|..+.|+|... .||+++.|+.+.+||+..-.-+.+. 
T Consensus       279 ~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~-  355 (422)
T KOG0264|consen  279 AFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP-  355 (422)
T ss_pred             EeCCCCCc-eEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh-
Confidence            99998875 589999999999999997778999998 9999999999999775 7899999999999998642111110 


Q ss_pred             eeeecccccceeecCCCccceeeeeECCCCce-EEEeecCC
Q psy6859         222 VHFESKLDTDLFEFAKNKTYPSGLSFSPDGNK-FVTISMDR  261 (261)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~Dg  261 (261)
                      ..-+....++++.-.||...|..+.|+|+..+ |++.++|+
T Consensus       356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN  396 (422)
T KOG0264|consen  356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN  396 (422)
T ss_pred             hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence            00111234566888899999999999998776 55666664

>KOG0289|consensus

Probab=100.00  E-value=1.2e-30  Score=190.61  Aligned_cols=237  Identities=19%  Similarity=0.192  Sum_probs=201.2

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||+..|+.+.|+| ...+++++.|..|+||.....  ........|..+|+.+..+|.|.||++++.|++..+.|++++.
T Consensus       259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~  336 (506)
T KOG0289|consen  259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS--SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS  336 (506)
T ss_pred             CcceEEEEEEeccchhheeecCCcceEEeeccccc--cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc
Confidence            8999999999999 788999999999999998876  5666778899999999999999999999999999999999998


Q ss_pred             eeeeeecc--CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          80 MINMIKLD--FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        80 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      .+......  .-......++|+|-.+.+.    ..|+.++|||+.++.....+..  +...|..++|+.+|.+  ++++.
T Consensus       337 ~lt~vs~~~s~v~~ts~~fHpDgLifgtg----t~d~~vkiwdlks~~~~a~Fpg--ht~~vk~i~FsENGY~--Lat~a  408 (506)
T KOG0289|consen  337 QLTVVSDETSDVEYTSAAFHPDGLIFGTG----TPDGVVKIWDLKSQTNVAKFPG--HTGPVKAISFSENGYW--LATAA  408 (506)
T ss_pred             EEEEEeeccccceeEEeeEcCCceEEecc----CCCceEEEEEcCCccccccCCC--CCCceeEEEeccCceE--EEEEe
Confidence            88776643  2346677888888655444    8999999999999887777665  6678999999999987  88999


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      +|+.|++||+| ..+..+++......++.++.|.+.|++|+.++.|=.|++++-.+             +...++..+..
T Consensus       409 dd~~V~lwDLR-Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-------------k~W~~~~~~~~  474 (506)
T KOG0289|consen  409 DDGSVKLWDLR-KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-------------KSWTEIKELAD  474 (506)
T ss_pred             cCCeEEEEEeh-hhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-------------ccceeeehhhh
Confidence            99999999999 77777777633445799999999999999998877777776433             44667777888


Q ss_pred             CccceeeeeECCCCceEEEeecCC
Q psy6859         238 NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |.+..+.+.|....++++++|.|.
T Consensus       475 ~sg~st~v~Fg~~aq~l~s~smd~  498 (506)
T KOG0289|consen  475 HSGLSTGVRFGEHAQYLASTSMDA  498 (506)
T ss_pred             cccccceeeecccceEEeeccchh
Confidence            999999999999999999999874

>KOG0275|consensus

Probab=100.00  E-value=8.8e-32  Score=190.60  Aligned_cols=236  Identities=14%  Similarity=0.156  Sum_probs=199.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCcee------eeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIE------FVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVF   73 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~w   73 (261)
                      |.++-+.|..|+| +++|++|+.||-|.+|+..++..+      ....+-.+..+|.|+.|+.|...+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            4456788999999 999999999999999999876321      122344578899999999999999999999999999


Q ss_pred             Eccccceeeeee-ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          74 DVINFDMINMIK-LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        74 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      .+.+|++++.+. .+...+++..++.++..+++.    +.|.++++.-++++++++.++.+  ...+....|.+++..  
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~----sfD~tvRiHGlKSGK~LKEfrGH--sSyvn~a~ft~dG~~--  362 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSA----SFDQTVRIHGLKSGKCLKEFRGH--SSYVNEATFTDDGHH--  362 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcc----cccceEEEeccccchhHHHhcCc--cccccceEEcCCCCe--
Confidence            999999999987 677788899999999888887    99999999999999999998874  457889999999987  


Q ss_pred             EEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCeeeeeeccccc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDT  230 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  230 (261)
                      +++++.||+|++|+.+ +.+++.+++ .+.+.+|+++..-|... .++++...+++.|-++.                ++
T Consensus       363 iisaSsDgtvkvW~~K-tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q----------------GQ  425 (508)
T KOG0275|consen  363 IISASSDGTVKVWHGK-TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ----------------GQ  425 (508)
T ss_pred             EEEecCCccEEEecCc-chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc----------------ce
Confidence            8899999999999999 899999887 34567888988888654 78888889999999975                45


Q ss_pred             ceeecCC---CccceeeeeECCCCceEEEeecCC
Q psy6859         231 DLFEFAK---NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       231 ~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .++.+..   ..+...+.+.||.|.++.+.++|+
T Consensus       426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~  459 (508)
T KOG0275|consen  426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG  459 (508)
T ss_pred             EEeeeccCCccCCceEEEEecCCCcEEEEEccCc
Confidence            5555542   334556778999999999999986

>KOG0277|consensus

Probab=100.00  E-value=1.2e-30  Score=178.39  Aligned_cols=231  Identities=13%  Similarity=0.181  Sum_probs=184.2

Q ss_pred             EEEEEcC--CCeEEEe-------cCCCeEEEEecc-CCceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEc
Q psy6859           7 THVVVTK--TDFVITA-------SNDGHIKFWKKQ-EEGIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         7 ~~~~~~~--~~~l~s~-------~~d~~i~iw~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~   75 (261)
                      .++.|||  .++||.+       ...|.+.|.++. .++......+. -++.+..++|+++ .+.+++++.||++++||+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            4789999  6666554       246889999985 45555555665 4578999999984 567889999999999996


Q ss_pred             cc-cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          76 IN-FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      .. ..++..++.+...+..+.+....+.....   ++-|++|++|+....+.+.++..  +...|....|+|.... +++
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lt---sSWD~TiKLW~~~r~~Sv~Tf~g--h~~~Iy~a~~sp~~~n-lfa  164 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLT---SSWDGTIKLWDPNRPNSVQTFNG--HNSCIYQAAFSPHIPN-LFA  164 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEe---eccCCceEeecCCCCcceEeecC--CccEEEEEecCCCCCC-eEE
Confidence            53 34777777777776666666544433322   38999999999999988888876  5668999999998775 488


Q ss_pred             EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcC-CCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP-IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF  233 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  233 (261)
                      +++.|+.+++||++..++.+. ++ .|...|.++.|+. +...|++|+.|+.|+.||+++              ...++.
T Consensus       165 s~Sgd~~l~lwdvr~~gk~~~-i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~--------------~r~pl~  228 (311)
T KOG0277|consen  165 SASGDGTLRLWDVRSPGKFMS-IE-AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN--------------LRTPLF  228 (311)
T ss_pred             EccCCceEEEEEecCCCceeE-EE-eccceeEeecccccCCcEEEecCCCceEEEEehhh--------------ccccce
Confidence            889999999999996666665 76 8999999999997 445889999999999999974              467899


Q ss_pred             ecCCCccceeeeeECCCC-ceEEEeecC
Q psy6859         234 EFAKNKTYPSGLSFSPDG-NKFVTISMD  260 (261)
Q Consensus       234 ~~~~~~~~v~~~~~s~~~-~~l~s~~~D  260 (261)
                      ++.+|.-.|+.++|||.. ..||+++.|
T Consensus       229 eL~gh~~AVRkvk~Sph~~~lLaSasYD  256 (311)
T KOG0277|consen  229 ELNGHGLAVRKVKFSPHHASLLASASYD  256 (311)
T ss_pred             eecCCceEEEEEecCcchhhHhhhcccc
Confidence            999999999999999954 678898887

>KOG1446|consensus

Probab=99.98  E-value=5.1e-29  Score=175.36  Aligned_cols=232  Identities=13%  Similarity=0.184  Sum_probs=191.8

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC--CCcEEEEEccccc
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS--DKAMKVFDVINFD   79 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~v~~wd~~~~~   79 (261)
                      ...|+++.|++ |.++++++.|.+++|||..++  ..++++..+.-.|..++|....+.++.++.  |.+|+..++.+.+
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK   91 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence            46799999999 999999999999999999987  888888888888999999876667776665  8899999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .++.+..|...+..+.++|.++.+++.    +.|++|++||++..++...+.....    ...+|+|+|..  ++.+...
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~d~FlS~----S~D~tvrLWDlR~~~cqg~l~~~~~----pi~AfDp~GLi--fA~~~~~  161 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKDDTFLSS----SLDKTVRLWDLRVKKCQGLLNLSGR----PIAAFDPEGLI--FALANGS  161 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCCCeEEec----ccCCeEEeeEecCCCCceEEecCCC----cceeECCCCcE--EEEecCC
Confidence            999999999999999999988877776    9999999999998888777765433    35789999954  6666666


Q ss_pred             CeEEEEEccCC-Cccceeec--cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         160 SHVHIYDCKGN-GTPLHVLD--RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       160 ~~i~i~d~~~~-~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      +.|++||+|.- ..|..++.  .+.....+.|.|+|||++|+.+...+.+++.|.-+               +..+..+.
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~---------------G~~~~tfs  226 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD---------------GTVKSTFS  226 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC---------------CcEeeeEe
Confidence            69999999943 35666664  13467889999999999999999999999999743               45555555


Q ss_pred             CCccc---eeeeeECCCCceEEEeecCC
Q psy6859         237 KNKTY---PSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 ~~~~~---v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+...   ..+.+|+||++++++|+.||
T Consensus       227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg  254 (311)
T KOG1446|consen  227 GYPNAGNLPLSATFTPDSKFVLSGSDDG  254 (311)
T ss_pred             eccCCCCcceeEEECCCCcEEEEecCCC
Confidence            44322   25789999999999999987

>KOG0282|consensus

Probab=99.98  E-value=1.5e-31  Score=197.65  Aligned_cols=199  Identities=16%  Similarity=0.261  Sum_probs=173.7

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCC-CEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNG-TLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ||..+|..++|++ +..+++++.|+.+++||++++  +++..+. -...++++.|.|++ +.+++|+.|+.|+.||++++
T Consensus       256 gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG--~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~  332 (503)
T KOG0282|consen  256 GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG--QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG  332 (503)
T ss_pred             cchhhhhhhhccccCCeeeeeecceeeeeeccccc--eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence            7999999999999 999999999999999999998  7777776 34567999999988 88999999999999999999


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE----------------------------
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI----------------------------  130 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~----------------------------  130 (261)
                      +.++++..+...+..+.+-+.+.++++.    +.|+.++||+.+...+++.+                            
T Consensus       333 kvvqeYd~hLg~i~~i~F~~~g~rFiss----SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~  408 (503)
T KOG0282|consen  333 KVVQEYDRHLGAILDITFVDEGRRFISS----SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY  408 (503)
T ss_pred             HHHHHHHhhhhheeeeEEccCCceEeee----ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence            9999998888888888888889888887    99999999998765433222                            


Q ss_pred             ------------------eecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcC
Q psy6859         131 ------------------KLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP  192 (261)
Q Consensus       131 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  192 (261)
                                        +.+.-++..+.+.|+||+.+  +++|+.||.+.+||.+ +.+.+..++ .|+.++..+.|+|
T Consensus       409 i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~--l~SGdsdG~v~~wdwk-t~kl~~~lk-ah~~~ci~v~wHP  484 (503)
T KOG0282|consen  409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT--LCSGDSDGKVNFWDWK-TTKLVSKLK-AHDQPCIGVDWHP  484 (503)
T ss_pred             EEEEecccccccCHhhhhcceeccCceeeEEEcCCCCe--EEeecCCccEEEeech-hhhhhhccc-cCCcceEEEEecC
Confidence                              12222345678999999987  9999999999999999 999999998 9999999999999


Q ss_pred             CCC-EEEEEcCCCeEEEee
Q psy6859         193 IYQ-VVVSVDKAGILEYWS  210 (261)
Q Consensus       193 ~~~-~l~~~~~dg~i~iwd  210 (261)
                      ... .+|+++.||.|++|+
T Consensus       485 ~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  485 VEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCcceeEecccCceeEecC
Confidence            765 789999999999996

>KOG0278|consensus

Probab=99.98  E-value=2.2e-31  Score=181.84  Aligned_cols=199  Identities=17%  Similarity=0.279  Sum_probs=175.1

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      |+.-|.+++|+. .++|++|+.+..++|+|++... .+...+.+|++.|..+-|....+.|++++.|++||+||.+++..
T Consensus        99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~  177 (334)
T KOG0278|consen   99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE  177 (334)
T ss_pred             hhheeeeEEecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence            777899999999 7899999999999999998743 56678899999999999999888999999999999999999999


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ++++..+.. +..+.++.+++.+..     ...+.|.+||..+..+++.++.   |..|.+.+.+|+...  +++|++|.
T Consensus       178 v~sL~~~s~-VtSlEvs~dG~ilTi-----a~gssV~Fwdaksf~~lKs~k~---P~nV~SASL~P~k~~--fVaGged~  246 (334)
T KOG0278|consen  178 VQSLEFNSP-VTSLEVSQDGRILTI-----AYGSSVKFWDAKSFGLLKSYKM---PCNVESASLHPKKEF--FVAGGEDF  246 (334)
T ss_pred             EEEEecCCC-CcceeeccCCCEEEE-----ecCceeEEeccccccceeeccC---ccccccccccCCCce--EEecCcce
Confidence            999987654 667788888875544     4788999999999998888875   447888888998854  89999999


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .++.||.. ++..+..+..+|.++|.++.|+|+|...++|++||+|++|.+..
T Consensus       247 ~~~kfDy~-TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  247 KVYKFDYN-TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             EEEEEecc-CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence            99999999 99888886339999999999999999999999999999998754

>KOG0296|consensus

Probab=99.98  E-value=1.3e-29  Score=181.47  Aligned_cols=233  Identities=13%  Similarity=0.188  Sum_probs=186.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      .|+++|.+++.+| .++++||+.|....+|+..++  +....+.+|...|+++.|+.+|.+||||+.+|.|+||+..++.
T Consensus        62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~  139 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG  139 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence            5999999999999 889999999999999999998  6888999999999999999999999999999999999999998


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ....+......+.-+.++|....+++.    +.||.+.+|.+.++...+.+..+  ...+.+=.|.|+++.  ++++..|
T Consensus       140 ~~~~~~~e~~dieWl~WHp~a~illAG----~~DGsvWmw~ip~~~~~kv~~Gh--~~~ct~G~f~pdGKr--~~tgy~d  211 (399)
T KOG0296|consen  140 EQWKLDQEVEDIEWLKWHPRAHILLAG----STDGSVWMWQIPSQALCKVMSGH--NSPCTCGEFIPDGKR--ILTGYDD  211 (399)
T ss_pred             eEEEeecccCceEEEEecccccEEEee----cCCCcEEEEECCCcceeeEecCC--CCCcccccccCCCce--EEEEecC
Confidence            888776555556667777766655555    99999999999998778888774  456788899999987  8899999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeE--------------------------------------------------EE-
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVV--------------------------------------------------LI-  188 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~--------------------------------------------------~~-  188 (261)
                      |+|++|+.. +++++..+......+.+                                                  ++ 
T Consensus       212 gti~~Wn~k-tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  212 GTIIVWNPK-TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             ceEEEEecC-CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence            999999999 88888776411111111                                                  11 


Q ss_pred             --EEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         189 --KFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       189 --~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                        .++..-.+.|+|+-||+|.|||+..               .++ +..-.|...|..+.|-+ ..+|++++.||
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~---------------~~~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g  348 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAA---------------STL-RHICEHEDGVTKLKWLN-TDYLLTACANG  348 (399)
T ss_pred             hcccccccchhhcccccceEEEEeccc---------------chh-heeccCCCceEEEEEcC-cchheeeccCc
Confidence              1222234557777788888888743               222 33334888999999999 68899988876

>KOG0306|consensus

Probab=99.98  E-value=4.8e-30  Score=199.08  Aligned_cols=234  Identities=15%  Similarity=0.202  Sum_probs=201.2

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      ||+..|.+++++.++.++..+..+.+++|+.++.  ++++++..  +.+.+..|-|.++++++|...|.+.+||+.+...
T Consensus       371 GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~--kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l  446 (888)
T KOG0306|consen  371 GHRSDVRSLCVSSDSILLASGAGESIKIWNRDTL--KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASL  446 (888)
T ss_pred             cchhheeEEEeecCceeeeecCCCcEEEEEccCc--ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence            8999999999999554444455689999999987  88888874  4889999999999999999999999999999999


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-----CceeeEEeec-----CCcceEEEEEEeCCCCc
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-----NDMINMIKLD-----FTPLTVECIHYLGDAIP  150 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  150 (261)
                      +.+++.|...+..+...|++..++++    +.|.+|++||..-     +...+.+..+     .-+..+.|+.++||+.+
T Consensus       447 ~Eti~AHdgaIWsi~~~pD~~g~vT~----saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  447 VETIRAHDGAIWSISLSPDNKGFVTG----SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             hhhhhccccceeeeeecCCCCceEEe----cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence            99988888889999999999888777    9999999999751     2111112211     12447899999999986


Q ss_pred             eEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccc
Q psy6859         151 TAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDT  230 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  230 (261)
                        ++.+--|+++++|-+. +-+..-.+. +|.-||.++..+||++++++|+.|..|++|-++               -+.
T Consensus       523 --LaVsLLdnTVkVyflD-tlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLd---------------FGD  583 (888)
T KOG0306|consen  523 --LAVSLLDNTVKVYFLD-TLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD---------------FGD  583 (888)
T ss_pred             --EEEEeccCeEEEEEec-ceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccc---------------cch
Confidence              7888889999999998 877777777 999999999999999999999999999999984               478


Q ss_pred             ceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         231 DLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       231 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |-+.+-+|.+.|.++.|-|+...+.+||.|+
T Consensus       584 CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~  614 (888)
T KOG0306|consen  584 CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG  614 (888)
T ss_pred             hhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence            8899999999999999999999999999986

>KOG0305|consensus

Probab=99.98  E-value=6.5e-30  Score=195.03  Aligned_cols=229  Identities=14%  Similarity=0.186  Sum_probs=198.0

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeec-cccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRS-HLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      .+.|+++.|++ |.+|++|..+|.|.|||..+.  +.+..+.+ |...|-+++|.  +..+.+|+.|+.|..+|++..+.
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~  292 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH  292 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence            57899999999 999999999999999999886  77778888 99999999998  45899999999999999998775


Q ss_pred             eee-eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE--ec
Q psy6859          81 INM-IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS--DQ  157 (261)
Q Consensus        81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  157 (261)
                      ... +..+.+.++.+.+++++.++++.    +.|+.+.|||....+++..+..  +...|.+++|+|-...+ +++  |+
T Consensus       293 ~~~~~~~H~qeVCgLkws~d~~~lASG----gnDN~~~Iwd~~~~~p~~~~~~--H~aAVKA~awcP~q~~l-LAsGGGs  365 (484)
T KOG0305|consen  293 VVSTLQGHRQEVCGLKWSPDGNQLASG----GNDNVVFIWDGLSPEPKFTFTE--HTAAVKALAWCPWQSGL-LATGGGS  365 (484)
T ss_pred             hhhhhhcccceeeeeEECCCCCeeccC----CCccceEeccCCCccccEEEec--cceeeeEeeeCCCccCc-eEEcCCC
Confidence            555 77788888999999999888776    9999999999977777766665  56689999999987754 454  35


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE--cCCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV--DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF  235 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
                      .|+.|++||.. +++.+..+  .....|.+|.|++..+.|+++  ..++.|.||+..               +.+.+..+
T Consensus       366 ~D~~i~fwn~~-~g~~i~~v--dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p---------------s~~~~~~l  427 (484)
T KOG0305|consen  366 ADRCIKFWNTN-TGARIDSV--DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP---------------SMKLVAEL  427 (484)
T ss_pred             cccEEEEEEcC-CCcEeccc--ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc---------------ccceeeee
Confidence            69999999999 99999998  478889999999998766553  467789999984               46778899


Q ss_pred             CCCccceeeeeECCCCceEEEeecC
Q psy6859         236 AKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       236 ~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      .+|...|..+++||||..+++|+.|
T Consensus       428 ~gH~~RVl~la~SPdg~~i~t~a~D  452 (484)
T KOG0305|consen  428 LGHTSRVLYLALSPDGETIVTGAAD  452 (484)
T ss_pred             cCCcceeEEEEECCCCCEEEEeccc
Confidence            9999999999999999999999987

>KOG0274|consensus

Probab=99.98  E-value=3.9e-30  Score=202.60  Aligned_cols=225  Identities=16%  Similarity=0.224  Sum_probs=191.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.+.|+++++.. +.+|++|+.|.++++||..++  ++...+.+|.+.|.++...+.  ++++|+.|.+|++|++.++.
T Consensus       247 GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~  322 (537)
T KOG0274|consen  247 GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGA  322 (537)
T ss_pred             CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcc
Confidence            8999999999988 889999999999999999888  899999999999999887654  88899999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+..+..+..++..+.+.  +..++++    +.|++|++||+.++++++.+..  +..+|.++.+.+. ..  +++|+.|
T Consensus       323 ~l~l~~~h~~~V~~v~~~--~~~lvsg----s~d~~v~VW~~~~~~cl~sl~g--H~~~V~sl~~~~~-~~--~~Sgs~D  391 (537)
T KOG0274|consen  323 CLNLLRGHTGPVNCVQLD--EPLLVSG----SYDGTVKVWDPRTGKCLKSLSG--HTGRVYSLIVDSE-NR--LLSGSLD  391 (537)
T ss_pred             eEEEeccccccEEEEEec--CCEEEEE----ecCceEEEEEhhhceeeeeecC--CcceEEEEEecCc-ce--EEeeeec
Confidence            999988766665555554  6555555    9999999999999999999998  5568999988875 22  8999999


Q ss_pred             CeEEEEEccCCC-ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC-
Q psy6859         160 SHVHIYDCKGNG-TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-  237 (261)
Q Consensus       160 ~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  237 (261)
                      +.|++||++ +. +++..+. .|..-+..+.+  .+++|++++.|+.|++||.               ..+++++.+.+ 
T Consensus       392 ~~IkvWdl~-~~~~c~~tl~-~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~---------------~~~~~~~~~~~~  452 (537)
T KOG0274|consen  392 TTIKVWDLR-TKRKCIHTLQ-GHTSLVSSLLL--RDNFLVSSSADGTIKLWDA---------------EEGECLRTLEGR  452 (537)
T ss_pred             cceEeecCC-chhhhhhhhc-CCccccccccc--ccceeEeccccccEEEeec---------------ccCceeeeeccC
Confidence            999999999 77 8999998 88888866554  5779999999999999998               44788888888 


Q ss_pred             CccceeeeeECCCCceEEEeecCC
Q psy6859         238 NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |...|..+++.  ...+++++.||
T Consensus       453 ~~~~v~~l~~~--~~~il~s~~~~  474 (537)
T KOG0274|consen  453 HVGGVSALALG--KEEILCSSDDG  474 (537)
T ss_pred             CcccEEEeecC--cceEEEEecCC
Confidence            67888888876  34566666664

>KOG0308|consensus

Probab=99.98  E-value=4.6e-31  Score=201.56  Aligned_cols=231  Identities=16%  Similarity=0.203  Sum_probs=189.8

Q ss_pred             EEEEcC--CCeEEEecCCCeEEEEeccCCce----eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc--c
Q psy6859           8 HVVVTK--TDFVITASNDGHIKFWKKQEEGI----EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF--D   79 (261)
Q Consensus         8 ~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~--~   79 (261)
                      .+..+.  +++|+||+.||.|++|++.....    .....++.|.+.|+.+....+++.|+++|.|-+|++|+...+  -
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            444443  67899999999999999865321    246778899999999999999999999999999999999876  4


Q ss_pred             eeeeeeccCcceeEEEE-eecCCceeeeeeecCCCCeEEEEEcCCCc--eeeEE------eec-CCcceEEEEEEeCCCC
Q psy6859          80 MINMIKLDFTPLTVECI-HYLGDAIPTAAVSDQDSSRVHIYDCKGND--MINMI------KLD-FTPLTVECIHYLGDAI  149 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~------~~~-~~~~~~~~~~~~~~~~  149 (261)
                      ++.++..|..-+.++.+ ..+...+    ++|+-|+.|.+||++++.  .+..+      ... .+...+.+++.++.+ 
T Consensus       109 c~stir~H~DYVkcla~~ak~~~lv----aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-  183 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIAKNNELV----ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-  183 (735)
T ss_pred             hHhhhhcccchheeeeecccCceeE----EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-
Confidence            56666666666666666 3333333    345999999999999772  22222      111 344578899999988 


Q ss_pred             ceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccc
Q psy6859         150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLD  229 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  229 (261)
                       .++++|+.++.+++||.+ +.+.+..+. +|...|..+..++||+.+++++.||+|++||+.               ..
T Consensus       184 -t~ivsGgtek~lr~wDpr-t~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg---------------qQ  245 (735)
T KOG0308|consen  184 -TIIVSGGTEKDLRLWDPR-TCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG---------------QQ  245 (735)
T ss_pred             -eEEEecCcccceEEeccc-cccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecc---------------cc
Confidence             458999999999999999 998999998 999999999999999999999999999999995               47


Q ss_pred             cceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         230 TDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       230 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +++.++..|+..|+++..+|+-.++.+|+.||
T Consensus       246 rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~  277 (735)
T KOG0308|consen  246 RCLATYIVHKEGVWALQSSPSFTHVYSGGRDG  277 (735)
T ss_pred             ceeeeEEeccCceEEEeeCCCcceEEecCCCC
Confidence            89999999999999999999999999999886

>KOG0310|consensus

Probab=99.98  E-value=2.5e-30  Score=191.28  Aligned_cols=232  Identities=16%  Similarity=0.190  Sum_probs=193.5

Q ss_pred             CCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           4 SPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         4 ~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ++|.+++|+|  ..-+|+.+. -.+.||+..+.  ...+.+......|.++.|-.||+++++|+..|.|+++|..+...+
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~--~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL  103 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTR--SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL  103 (487)
T ss_pred             CcceeEecCCCCCCceEEecc-cEEEEEecchh--hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence            6899999999  334444443 57889988775  555656666788999999999999999999999999998877788


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      +.+..+..|.....+++.++.+++   +|+.|+.+++||+.+...  .+....+...|+|.+++|.... ++++|+.||.
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~---s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~h-ivvtGsYDg~  177 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLV---SGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDH-IVVTGSYDGK  177 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEE---ecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCe-EEEecCCCce
Confidence            888999999999999998875544   478999999999999875  4455567789999999998764 5899999999


Q ss_pred             EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccc
Q psy6859         162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTY  241 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (261)
                      |++||++.....+.++  .|..+|..+.+-|.|..+++++. ..+++||+-++              ++.+.....|...
T Consensus       178 vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G--------------~qll~~~~~H~Kt  240 (487)
T KOG0310|consen  178 VRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTG--------------GQLLTSMFNHNKT  240 (487)
T ss_pred             EEEEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCC--------------ceehhhhhcccce
Confidence            9999999444778888  69999999999999999999885 46999999643              4555555669999


Q ss_pred             eeeeeECCCCceEEEeecCC
Q psy6859         242 PSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       242 v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |+|+.+..++..|+++|-||
T Consensus       241 VTcL~l~s~~~rLlS~sLD~  260 (487)
T KOG0310|consen  241 VTCLRLASDSTRLLSGSLDR  260 (487)
T ss_pred             EEEEEeecCCceEeeccccc
Confidence            99999999999999999986

>KOG0313|consensus

Probab=99.98  E-value=4.2e-30  Score=184.81  Aligned_cols=232  Identities=15%  Similarity=0.232  Sum_probs=185.2

Q ss_pred             CCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCC---CEEEEEeCCCcEEEEEcccc
Q psy6859           2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNG---TLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         2 H~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~v~~wd~~~~   78 (261)
                      |.+-|.+|... ++.|++|+.||.+++|+...   +...++.+|.++|.+++|.-.+   ..+++++.|.++++|.++.+
T Consensus       104 hdDWVSsv~~~-~~~IltgsYDg~~riWd~~G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  104 HDDWVSSVKGA-SKWILTGSYDGTSRIWDLKG---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             chhhhhhhccc-CceEEEeecCCeeEEEecCC---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            56666666665 57899999999999999876   6888899999999988885433   35999999999999999876


Q ss_pred             ceee----eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-------------------------ceeeE
Q psy6859          79 DMIN----MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-------------------------DMINM  129 (261)
Q Consensus        79 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-------------------------~~~~~  129 (261)
                      +...    .-+.|..++..+...+++..+.+.    +.|.+++||+..+.                         .++. 
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg----S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v-  254 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG----SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV-  254 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEee----cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE-
Confidence            5332    223566667777777888777666    99999999993211                         1122 


Q ss_pred             EeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859         130 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYW  209 (261)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  209 (261)
                       .+..|...|.++.|++...   +.+++.|.+|+.||+. ++..+.++.  .+..++++..+|..++|++|+.|..+++|
T Consensus       255 -tl~GHt~~Vs~V~w~d~~v---~yS~SwDHTIk~WDle-tg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~irl~  327 (423)
T KOG0313|consen  255 -TLEGHTEPVSSVVWSDATV---IYSVSWDHTIKVWDLE-TGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRHIRLW  327 (423)
T ss_pred             -EecccccceeeEEEcCCCc---eEeecccceEEEEEee-cccceeeee--cCcceeEeecccccceeeecCCCCceeec
Confidence             2334566889999998553   8899999999999999 898888884  67889999999999999999999999999


Q ss_pred             ecccccccCCeeeeeecccccceeecCCCccceeeeeECCCC-ceEEEeecCC
Q psy6859         210 SGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDG-NKFVTISMDR  261 (261)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~Dg  261 (261)
                      |.+++            ...-..+++.+|.+.|.++.|+|.. ..|++++.||
T Consensus       328 DPR~~------------~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  328 DPRTG------------DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             CCCCC------------CCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            99864            2234557888999999999999955 5688999986

>KOG0641|consensus

Probab=99.97  E-value=1e-28  Score=166.84  Aligned_cols=239  Identities=16%  Similarity=0.223  Sum_probs=190.6

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCce---eeeEEeeccccceeEEEEee----CCCEEEEEe-CCCcEEE
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGI---EFVKHFRSHLGVIHSICTNY----NGTLLCTVA-SDKAMKV   72 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~----~~~~l~s~~-~dg~v~~   72 (261)
                      |++.|.|.+|+| |++|++|++|.+|++...+....   -.-.++..|.+.|..++|..    .+..|++++ .|..|++
T Consensus        88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~  167 (350)
T KOG0641|consen   88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI  167 (350)
T ss_pred             cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence            889999999999 99999999999999987654311   12346778999999999964    345777765 4677888


Q ss_pred             EEccccceeeeeeccCcceeEEEE-eecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC-----cceEEEEEEeC
Q psy6859          73 FDVINFDMINMIKLDFTPLTVECI-HYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT-----PLTVECIHYLG  146 (261)
Q Consensus        73 wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~  146 (261)
                      -|...|+....+..+...  +..+ +.++..+    ++|+.|.+|++||++-..++..+....+     ...+.+++..|
T Consensus       168 tdc~~g~~~~a~sghtgh--ilalyswn~~m~----~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp  241 (350)
T KOG0641|consen  168 TDCGRGQGFHALSGHTGH--ILALYSWNGAMF----ASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP  241 (350)
T ss_pred             eecCCCCcceeecCCccc--EEEEEEecCcEE----EccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC
Confidence            898899988887755433  3333 3344333    4569999999999998888887754433     34788999999


Q ss_pred             CCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeec
Q psy6859         147 DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFES  226 (261)
Q Consensus       147 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  226 (261)
                      .+..  +++|..|....+||++ .+++++.+. +|...|.++.|+|...|+++++.|..|++-|++...           
T Consensus       242 sgrl--l~sg~~dssc~lydir-g~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl-----------  306 (350)
T KOG0641|consen  242 SGRL--LASGHADSSCMLYDIR-GGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL-----------  306 (350)
T ss_pred             Ccce--eeeccCCCceEEEEee-CCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccch-----------
Confidence            9974  9999999999999999 899999998 999999999999999999999999999999986421           


Q ss_pred             ccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         227 KLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       227 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ...-++.....|+..+..+.|+|..--+++.+.|+
T Consensus       307 a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk  341 (350)
T KOG0641|consen  307 AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK  341 (350)
T ss_pred             hhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence            12233445556999999999999888888888774

>KOG0300|consensus

Probab=99.97  E-value=2.6e-30  Score=182.65  Aligned_cols=239  Identities=14%  Similarity=0.191  Sum_probs=197.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEec------cCC--------------------------------ceeeeEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKK------QEE--------------------------------GIEFVKH   41 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~------~~~--------------------------------~~~~~~~   41 (261)
                      ||.+.|++|+|++ +.++++++.|++..||..      ...                                -..++..
T Consensus       188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~  267 (481)
T KOG0300|consen  188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR  267 (481)
T ss_pred             ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence            8999999999999 899999999999999972      110                                0235667


Q ss_pred             eeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEc
Q psy6859          42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC  121 (261)
Q Consensus        42 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~  121 (261)
                      +.+|.+.|.+..|...++.+++++.|.+..+||+++++.+..+..+.+....++.+|....+++.    +.|.++++||+
T Consensus       268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs----SrDtTFRLWDF  343 (481)
T KOG0300|consen  268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS----SRDTTFRLWDF  343 (481)
T ss_pred             eeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEe----ccCceeEeccc
Confidence            88999999999999999999999999999999999999999999888888888888888777666    99999999999


Q ss_pred             CCC-ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE
Q psy6859         122 KGN-DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV  200 (261)
Q Consensus       122 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  200 (261)
                      +.. ..+..+++  +...+++..|+.+..   +++|++|.+|++||+++...++.++.  ...+++.++.+..+..|+.-
T Consensus       344 ReaI~sV~VFQG--HtdtVTS~vF~~dd~---vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiP  416 (481)
T KOG0300|consen  344 REAIQSVAVFQG--HTDTVTSVVFNTDDR---VVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIP  416 (481)
T ss_pred             hhhcceeeeecc--cccceeEEEEecCCc---eeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEec
Confidence            843 23444554  556899999998887   99999999999999997778999994  78899999999988899999


Q ss_pred             cCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCC--ceEEEeecCC
Q psy6859         201 DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDG--NKFVTISMDR  261 (261)
Q Consensus       201 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~Dg  261 (261)
                      ..+..|++||+..+..           ..-+...-++|...|.+++|..+.  .-|++||.|+
T Consensus       417 hDNRqvRlfDlnG~Rl-----------aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR  468 (481)
T KOG0300|consen  417 HDNRQVRLFDLNGNRL-----------ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDR  468 (481)
T ss_pred             cCCceEEEEecCCCcc-----------ccCCcccccccceeeeeeeccccCcccccccccccc
Confidence            9999999999964311           011222345799999999998654  3477777764

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.3e-28  Score=193.70  Aligned_cols=233  Identities=12%  Similarity=0.112  Sum_probs=174.5

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCcee-----------eeEEeeccccceeEEEEee-CCCEEEEEeCCCcEE
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIE-----------FVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMK   71 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~   71 (261)
                      .|+....++ +..+++++.+.....|+...+...           ....+.+|.+.|.+++|+| ++++|++++.|++|+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk  101 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM  101 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            444455555 466778888888888876543110           0124678999999999999 888999999999999


Q ss_pred             EEEccccc-------eeeeeeccCcceeEEEEeecCC-ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEE
Q psy6859          72 VFDVINFD-------MINMIKLDFTPLTVECIHYLGD-AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIH  143 (261)
Q Consensus        72 ~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  143 (261)
                      +||+.++.       .+..+..+...+..+.+++.+. .++++    +.|+.|++||+++++.+..+..  +...+.+++
T Consensus       102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg----s~DgtVrIWDl~tg~~~~~l~~--h~~~V~sla  175 (493)
T PTZ00421        102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA----GADMVVNVWDVERGKAVEVIKC--HSDQITSLE  175 (493)
T ss_pred             EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE----eCCCEEEEEECCCCeEEEEEcC--CCCceEEEE
Confidence            99997652       3556666777788888888754 44444    8999999999999887777654  455799999


Q ss_pred             EeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccC-eEEEEEcCCCCEEEEEc----CCCeEEEeecccccccC
Q psy6859         144 YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKP-VVLIKFNPIYQVVVSVD----KAGILEYWSGYKQEFKF  218 (261)
Q Consensus       144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~  218 (261)
                      |+|++..  +++++.|+.|++||++ +++.+..+. .|... +..+.|.+++..+++++    .|+.|++||+++.    
T Consensus       176 ~spdG~l--Latgs~Dg~IrIwD~r-sg~~v~tl~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~----  247 (493)
T PTZ00421        176 WNLDGSL--LCTTSKDKKLNIIDPR-DGTIVSSVE-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM----  247 (493)
T ss_pred             EECCCCE--EEEecCCCEEEEEECC-CCcEEEEEe-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC----
Confidence            9999975  8899999999999999 888888887 77654 45678999888776643    5789999999642    


Q ss_pred             CeeeeeecccccceeecCC-CccceeeeeECCCCceEEEeec-CC
Q psy6859         219 PKCVHFESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVTISM-DR  261 (261)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~-Dg  261 (261)
                                ..++..... +...+....|+|++++|++++. ||
T Consensus       248 ----------~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg  282 (493)
T PTZ00421        248 ----------ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG  282 (493)
T ss_pred             ----------CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC
Confidence                      223333332 2345566789999999998874 64

>KOG0294|consensus

Probab=99.97  E-value=2.4e-29  Score=176.94  Aligned_cols=229  Identities=16%  Similarity=0.204  Sum_probs=193.5

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCC--EEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGT--LLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~v~~wd~~~~   78 (261)
                      .|..+|++++.+ +.++|+|+.|.+|+|||+...  ..+..+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+....
T Consensus        41 aH~~sitavAVs-~~~~aSGssDetI~IYDm~k~--~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W  117 (362)
T KOG0294|consen   41 AHAGSITALAVS-GPYVASGSSDETIHIYDMRKR--KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW  117 (362)
T ss_pred             ccccceeEEEec-ceeEeccCCCCcEEEEeccch--hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence            388999999987 679999999999999999987  67778888999999999998654  8999999999999999999


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      +++..++.+...+..+.++|.++.-+++    +.|+.+++||+-+++.-..+.+...+   ..+.|+|.+.+  ++.+. 
T Consensus       118 ~~~~slK~H~~~Vt~lsiHPS~KLALsV----g~D~~lr~WNLV~Gr~a~v~~L~~~a---t~v~w~~~Gd~--F~v~~-  187 (362)
T KOG0294|consen  118 ELLKSLKAHKGQVTDLSIHPSGKLALSV----GGDQVLRTWNLVRGRVAFVLNLKNKA---TLVSWSPQGDH--FVVSG-  187 (362)
T ss_pred             EEeeeecccccccceeEecCCCceEEEE----cCCceeeeehhhcCccceeeccCCcc---eeeEEcCCCCE--EEEEe-
Confidence            9999999998889999999999888787    99999999999998876666655433   44899999986  33333 


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN  238 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (261)
                      ...|-+|.+. +.+....+.  ....+.++.|- ++.+|++|..|+.|.+||.+               ...+...+.+|
T Consensus       188 ~~~i~i~q~d-~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d---------------s~~~~~~~~AH  248 (362)
T KOG0294|consen  188 RNKIDIYQLD-NASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTD---------------SDTPLTEFLAH  248 (362)
T ss_pred             ccEEEEEecc-cHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccC---------------CCccceeeecc
Confidence            5679999998 777777774  34556677665 45689999999999999984               36788899999


Q ss_pred             ccceeeeeE--CCCCceEEEeecCC
Q psy6859         239 KTYPSGLSF--SPDGNKFVTISMDR  261 (261)
Q Consensus       239 ~~~v~~~~~--s~~~~~l~s~~~Dg  261 (261)
                      ..+|.++.+  .|++.+|+++|.||
T Consensus       249 ~~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  249 ENRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             hhheeeeEEEecCCceEEEEeccCc
Confidence            999999984  57889999999997

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=8.4e-29  Score=195.81  Aligned_cols=217  Identities=13%  Similarity=0.103  Sum_probs=165.8

Q ss_pred             EecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEccccc--------eeeeeeccCc
Q psy6859          19 TASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVINFD--------MINMIKLDFT   89 (261)
Q Consensus        19 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~~~--------~~~~~~~~~~   89 (261)
                      .|+.++.|++|+....  ..+..+.+|.+.|.+++|+|+ +++|++|+.|++|++||+.++.        .+..+..+..
T Consensus        49 gGG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         49 GGGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             CCCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence            3567889999998765  678889999999999999996 7899999999999999997542        2234555666


Q ss_pred             ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC
Q psy6859          90 PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG  169 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  169 (261)
                      .+..+.++|.+..+++   +++.|++|++||+++++.+..+..   +..+.+++|+|++..  +++++.|+.|++||++ 
T Consensus       127 ~V~sVaf~P~g~~iLa---SgS~DgtIrIWDl~tg~~~~~i~~---~~~V~SlswspdG~l--Lat~s~D~~IrIwD~R-  197 (568)
T PTZ00420        127 KISIIDWNPMNYYIMC---SSGFDSFVNIWDIENEKRAFQINM---PKKLSSLKWNIKGNL--LSGTCVGKHMHIIDPR-  197 (568)
T ss_pred             cEEEEEECCCCCeEEE---EEeCCCeEEEEECCCCcEEEEEec---CCcEEEEEECCCCCE--EEEEecCCEEEEEECC-
Confidence            7788888887765432   348899999999999887666542   347899999999974  7778889999999999 


Q ss_pred             CCccceeeccCcccCeEEE-----EEcCCCCEEEEEcCCC----eEEEeecccccccCCeeeeeecccccceeecC--CC
Q psy6859         170 NGTPLHVLDRLHTKPVVLI-----KFNPIYQVVVSVDKAG----ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA--KN  238 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  238 (261)
                      +++.+.++. +|.+.+...     .|++++.+|++++.|+    .|+|||++.              ..+++....  .+
T Consensus       198 sg~~i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~--------------~~~pl~~~~ld~~  262 (568)
T PTZ00420        198 KQEIASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN--------------TTSALVTMSIDNA  262 (568)
T ss_pred             CCcEEEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC--------------CCCceEEEEecCC
Confidence            888888887 888765432     3568889998877664    799999963              234444332  33


Q ss_pred             ccceeeeeECCCCceEEEeecCC
Q psy6859         239 KTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       239 ~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+.+......++|.++++|+.|+
T Consensus       263 ~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        263 SAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             ccceEEeeeCCCCCEEEEEECCC
Confidence            34444444566789999998875

>KOG0306|consensus

Probab=99.97  E-value=9.7e-30  Score=197.38  Aligned_cols=230  Identities=17%  Similarity=0.241  Sum_probs=197.8

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-----
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-----   77 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-----   77 (261)
                      +-+.+..|.| +.++++|...|.+.++|+...  ..+.++++|.+.|..++.+||++.+++|+.|.+|++||+.-     
T Consensus       413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~--~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~  490 (888)
T KOG0306|consen  413 GYILASKFVPGDRYIVLGTKNGELQVFDLASA--SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP  490 (888)
T ss_pred             ccEEEEEecCCCceEEEeccCCceEEEEeehh--hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence            3567888999 889999999999999999987  67778889999999999999999999999999999999752     


Q ss_pred             ccee--------eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC
Q psy6859          78 FDMI--------NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI  149 (261)
Q Consensus        78 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (261)
                      +...        +++++. ..+.++.++|++.+++..    =-|.++++|-+.+-+....+-  .|..+|.|+..+||..
T Consensus       491 gt~~k~lsl~~~rtLel~-ddvL~v~~Spdgk~LaVs----LLdnTVkVyflDtlKFflsLY--GHkLPV~smDIS~DSk  563 (888)
T KOG0306|consen  491 GTQKKVLSLKHTRTLELE-DDVLCVSVSPDGKLLAVS----LLDNTVKVYFLDTLKFFLSLY--GHKLPVLSMDISPDSK  563 (888)
T ss_pred             cccceeeeeccceEEecc-ccEEEEEEcCCCcEEEEE----eccCeEEEEEecceeeeeeec--ccccceeEEeccCCcC
Confidence            2221        122222 236678889999888776    579999999998876555444  4666899999999997


Q ss_pred             ceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccc
Q psy6859         150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLD  229 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  229 (261)
                      .  +++|+.|.+|++|-+. -|.+-+.+- +|+..|.++.|-|+...+.+++.|+.|+-||-.               ..
T Consensus       564 l--ivTgSADKnVKiWGLd-FGDCHKS~f-AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~---------------kF  624 (888)
T KOG0306|consen  564 L--IVTGSADKNVKIWGLD-FGDCHKSFF-AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE---------------KF  624 (888)
T ss_pred             e--EEeccCCCceEEeccc-cchhhhhhh-cccCceeEEEEcccceeEEEecCcceEEeechh---------------hh
Confidence            5  9999999999999998 888988887 999999999999999999999999999999973               36


Q ss_pred             cceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         230 TDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       230 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +.++.+.+|...|++++.+|+|.+++++|.|.
T Consensus       625 e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~  656 (888)
T KOG0306|consen  625 EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK  656 (888)
T ss_pred             hhheeeccchheeeeeEEcCCCCeEEeccCCc
Confidence            78899999999999999999999999999984

>KOG0772|consensus

Probab=99.97  E-value=4.1e-30  Score=191.79  Aligned_cols=239  Identities=17%  Similarity=0.207  Sum_probs=177.8

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCce--eeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGI--EFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~   76 (261)
                      +|+..|.++++.| |..+++|+.|-+|++||+.....  +..+.+. .....|+++.|++.+..|++.+.....+|+|-.
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd  244 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD  244 (641)
T ss_pred             CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence            6889999999999 99999999999999999986431  1222222 234579999999999999998988899999954


Q ss_pred             ccceeeeee------------ccCcceeEEEEeecCC-ceeeeeeecCCCCeEEEEEcCCCc-eeeEEee---cCCcceE
Q psy6859          77 NFDMINMIK------------LDFTPLTVECIHYLGD-AIPTAAVSDQDSSRVHIYDCKGND-MINMIKL---DFTPLTV  139 (261)
Q Consensus        77 ~~~~~~~~~------------~~~~~~~~~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~---~~~~~~~  139 (261)
                      -.+.+...+            .|.....+.+|+|... .++++    +.|++++|||+...+ .++.++.   ......+
T Consensus       245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~----s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~  320 (641)
T KOG0772|consen  245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC----SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV  320 (641)
T ss_pred             CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe----cCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence            333333222            2334456667777554 34444    999999999998653 3444432   2344578


Q ss_pred             EEEEEeCCCCceEEEEecCCCeEEEEEccCC-CccceeeccCccc--CeEEEEEcCCCCEEEEEcCCCeEEEeecccccc
Q psy6859         140 ECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN-GTPLHVLDRLHTK--PVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEF  216 (261)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  216 (261)
                      ..++|++++..  +++|..||.|.+|+.+.. -.+...+..+|..  .|++|.||++|++|++-+.|+++++||+++.  
T Consensus       321 tsC~~nrdg~~--iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~--  396 (641)
T KOG0772|consen  321 TSCAWNRDGKL--IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF--  396 (641)
T ss_pred             eeeecCCCcch--hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc--
Confidence            89999999986  889999999999997621 2344444447766  8999999999999999999999999999852  


Q ss_pred             cCCeeeeeecccccceeecCC--CccceeeeeECCCCceEEEeec
Q psy6859         217 KFPKCVHFESKLDTDLFEFAK--NKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                                  .+++....+  ..-+-+.++|||+.++|++|..
T Consensus       397 ------------kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  397 ------------KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             ------------ccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence                        455555444  2234578999999999999864

>KOG1036|consensus

Probab=99.97  E-value=7.2e-29  Score=173.98  Aligned_cols=229  Identities=21%  Similarity=0.281  Sum_probs=181.1

Q ss_pred             CCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         2 H~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      |..++.+++|.+...+++|+.||.|+.+|+.++   ....+..|..+|.++.+++....+++|+.|++|++||.+....+
T Consensus        53 ~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~---~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~  129 (323)
T KOG1036|consen   53 HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG---NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV  129 (323)
T ss_pred             cCCceeeeeccCCceEEEeccCceEEEEEecCC---cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence            788999999999778999999999999999986   33455669999999999987779999999999999999875555


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      ..+....   .+.+..-.++.++.+    ..+..+.+||+++...........-...++|+++.|++.-  ++.++-||+
T Consensus       130 ~~~d~~k---kVy~~~v~g~~LvVg----~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG--y~~sSieGR  200 (323)
T KOG1036|consen  130 GTFDQGK---KVYCMDVSGNRLVVG----TSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG--YVVSSIEGR  200 (323)
T ss_pred             cccccCc---eEEEEeccCCEEEEe----ecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc--eEEEeecce
Confidence            5544332   455555567777665    7999999999998754443333333447899999996554  788889999


Q ss_pred             EEEEEccCCC----ccceeeccCcc---------cCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccc
Q psy6859         162 VHIYDCKGNG----TPLHVLDRLHT---------KPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKL  228 (261)
Q Consensus       162 i~i~d~~~~~----~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  228 (261)
                      |.+=.+. ..    +....|+ .|.         .+|++|+|+|-...||+|+.||.|.+||+.+               
T Consensus       201 VavE~~d-~s~~~~skkyaFk-CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~---------------  263 (323)
T KOG1036|consen  201 VAVEYFD-DSEEAQSKKYAFK-CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN---------------  263 (323)
T ss_pred             EEEEccC-CchHHhhhceeEE-eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc---------------
Confidence            9886665 33    3334444 442         4799999999999999999999999999954               


Q ss_pred             ccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         229 DTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       229 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      .+.+..+......|.+++|+.||..||+++.
T Consensus       264 rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  264 RKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             hhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            5667777777788999999999999999864

>KOG0641|consensus

Probab=99.97  E-value=3.6e-28  Score=164.23  Aligned_cols=237  Identities=14%  Similarity=0.138  Sum_probs=178.9

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCC-------------ceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEE-------------GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK   68 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg   68 (261)
                      +..|.+++|+| |.+.+.|++..+.+|.....-             .....+.-+.|.+.|.|.+|+|+|++|++|+.|.
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            35789999999 999999999999998754321             0112233456899999999999999999999999


Q ss_pred             cEEEEEcccccee-----eeeeccCcceeEEEEeecCCceeeeee-ecCCCCeEEEEEcCCCceeeEEeecCCcceEEEE
Q psy6859          69 AMKVFDVINFDMI-----NMIKLDFTPLTVECIHYLGDAIPTAAV-SDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECI  142 (261)
Q Consensus        69 ~v~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  142 (261)
                      +|++..++...+.     .++..+...+..+++-.+...--.+++ .|..|..|++-|...++..+.+..+.  ..|.++
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght--ghilal  189 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT--GHILAL  189 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc--ccEEEE
Confidence            9999887643322     233444444555555433221111122 24567888888999998888887753  344444


Q ss_pred             -EEeCCCCceEEEEecCCCeEEEEEccCCCccceeec-cC-----cccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccc
Q psy6859         143 -HYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RL-----HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       143 -~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  215 (261)
                       .|+.-    ++++|+.|.+|++||++ -..++.++. .-     ....|.+++..|.|++|++|-.|....+||++.  
T Consensus       190 yswn~~----m~~sgsqdktirfwdlr-v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg--  262 (350)
T KOG0641|consen  190 YSWNGA----MFASGSQDKTIRFWDLR-VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG--  262 (350)
T ss_pred             EEecCc----EEEccCCCceEEEEeee-ccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC--
Confidence             33332    38999999999999999 777777764 11     236789999999999999999999999999954  


Q ss_pred             ccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         216 FKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                   ++.++.+..|...|.++.|||...||++|+.|.
T Consensus       263 -------------~r~iq~f~phsadir~vrfsp~a~yllt~syd~  295 (350)
T KOG0641|consen  263 -------------GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM  295 (350)
T ss_pred             -------------CceeeeeCCCccceeEEEeCCCceEEEEecccc
Confidence                         788999999999999999999999999999883

>KOG2096|consensus

Probab=99.97  E-value=1.5e-29  Score=178.53  Aligned_cols=236  Identities=16%  Similarity=0.173  Sum_probs=179.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceee----------------------------------eEEe---
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEF----------------------------------VKHF---   42 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~----------------------------------~~~~---   42 (261)
                      ||.+.|++++|+. |++|++++.|++|++|++++-..+.                                  +..+   
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            7999999999999 9999999999999999986421000                                  0000   


Q ss_pred             --------------------eccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCc
Q psy6859          43 --------------------RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDA  102 (261)
Q Consensus        43 --------------------~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (261)
                                          +.|+-.|..+-...++++|++++.|..|.+|++. |+.+..+..+........++|+|+.
T Consensus       164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRF  242 (420)
T KOG2096|consen  164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRF  242 (420)
T ss_pred             ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcE
Confidence                                0133344555555677799999999999999997 9999988877777888999999999


Q ss_pred             eeeeeeecCCCCeEEEEEcC---CC---ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC------C
Q psy6859         103 IPTAAVSDQDSSRVHIYDCK---GN---DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG------N  170 (261)
Q Consensus       103 ~~~~~~s~~~d~~i~i~d~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~------~  170 (261)
                      +++.    +-.-.|++|.+-   .+   +..+.+++..+...+.+++|+++...  +++.+.||++++||..-      .
T Consensus       243 ia~~----gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r--~vtvSkDG~wriwdtdVrY~~~qD  316 (420)
T KOG2096|consen  243 IAVS----GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR--AVTVSKDGKWRIWDTDVRYEAGQD  316 (420)
T ss_pred             EEEe----cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce--eEEEecCCcEEEeeccceEecCCC
Confidence            9888    445578999863   22   34556677778889999999999987  89999999999999851      1


Q ss_pred             Cccceeec---cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC-CCccceeeee
Q psy6859         171 GTPLHVLD---RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA-KNKTYPSGLS  246 (261)
Q Consensus       171 ~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  246 (261)
                      .+.+++..   ....+....+.++|.|+.||.+. ...+++|..++               ++....++ .|...|.+++
T Consensus       317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~---------------g~~~~~~e~~h~~~Is~is  380 (420)
T KOG2096|consen  317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASED---------------GKDYPELEDIHSTTISSIS  380 (420)
T ss_pred             chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEccc---------------CccchhHHHhhcCceeeEE
Confidence            23333331   01233445899999999988765 45699998754               44444444 4999999999


Q ss_pred             ECCCCceEEEeec
Q psy6859         247 FSPDGNKFVTISM  259 (261)
Q Consensus       247 ~s~~~~~l~s~~~  259 (261)
                      |+|+|++++++|+
T Consensus       381 ~~~~g~~~atcGd  393 (420)
T KOG2096|consen  381 YSSDGKYIATCGD  393 (420)
T ss_pred             ecCCCcEEeeecc
Confidence            9999999999986

>KOG0274|consensus

Probab=99.97  E-value=3.6e-29  Score=197.17  Aligned_cols=225  Identities=16%  Similarity=0.245  Sum_probs=191.3

Q ss_pred             CCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEE-eeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKH-FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         2 H~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      |...+.+..|. +.++++++.|++|++|+..+.  ..+.. +.+|.+.|.++++...+.++++|+.|.++++||..++++
T Consensus       207 ~~~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C  283 (537)
T KOG0274|consen  207 DDHVVLCLQLH-DGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC  283 (537)
T ss_pred             Ccchhhhheee-cCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence            34566777777 567999999999999999886  56655 999999999999987677999999999999999999999


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ...+..+...+.++..  .+..+..    |+.|.+|++|+++++..+..+..  +...|.++..+.+.    +++|+.|+
T Consensus       284 ~~~l~gh~stv~~~~~--~~~~~~s----gs~D~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~----lvsgs~d~  351 (537)
T KOG0274|consen  284 THSLQGHTSSVRCLTI--DPFLLVS----GSRDNTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPL----LVSGSYDG  351 (537)
T ss_pred             EEEecCCCceEEEEEc--cCceEee----ccCCceEEEEeccCcceEEEecc--ccccEEEEEecCCE----EEEEecCc
Confidence            9999876655544443  3333333    58999999999999999999887  55689999988433    99999999


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccc-cceeecCCCc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLD-TDLFEFAKNK  239 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  239 (261)
                      +|++||+. ++++++.+. +|...|.++.+.+. ..+++|+.|+.|++||+++               . +++..+.+|.
T Consensus       352 ~v~VW~~~-~~~cl~sl~-gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~---------------~~~c~~tl~~h~  413 (537)
T KOG0274|consen  352 TVKVWDPR-TGKCLKSLS-GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT---------------KRKCIHTLQGHT  413 (537)
T ss_pred             eEEEEEhh-hceeeeeec-CCcceEEEEEecCc-ceEEeeeeccceEeecCCc---------------hhhhhhhhcCCc
Confidence            99999999 999999998 99999999988765 8899999999999999964               4 8999999999


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..+..+.+  .+++|++++.||
T Consensus       414 ~~v~~l~~--~~~~Lvs~~aD~  433 (537)
T KOG0274|consen  414 SLVSSLLL--RDNFLVSSSADG  433 (537)
T ss_pred             cccccccc--ccceeEeccccc
Confidence            99977665  567999999886

>KOG0265|consensus

Probab=99.97  E-value=1.6e-29  Score=176.64  Aligned_cols=200  Identities=17%  Similarity=0.198  Sum_probs=169.8

Q ss_pred             eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCe
Q psy6859          37 EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSR  115 (261)
Q Consensus        37 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~  115 (261)
                      .++..+.+|++.|+.+.|+|+|.+|++|+.|..|.+|++.. -+-...++.+...+..+.+..+++.++++    +.|++
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~----gtDk~  113 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSC----GTDKT  113 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEe----cCCce
Confidence            45566789999999999999999999999999999999643 23444555666666666677788877777    99999


Q ss_pred             EEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC
Q psy6859         116 VHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ  195 (261)
Q Consensus       116 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  195 (261)
                      ++.||.++++.++.++.+.  ..+..+..+..+. .++.+++.|+++++||+| ....++++  ..+.+++++.|..++.
T Consensus       114 v~~wD~~tG~~~rk~k~h~--~~vNs~~p~rrg~-~lv~SgsdD~t~kl~D~R-~k~~~~t~--~~kyqltAv~f~d~s~  187 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHT--SFVNSLDPSRRGP-QLVCSGSDDGTLKLWDIR-KKEAIKTF--ENKYQLTAVGFKDTSD  187 (338)
T ss_pred             EEEEecccceeeehhcccc--ceeeecCccccCC-eEEEecCCCceEEEEeec-ccchhhcc--ccceeEEEEEeccccc
Confidence            9999999999999888754  3566676655565 358899999999999999 88889988  4778899999999999


Q ss_pred             EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         196 VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       196 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+.+|+-|+.|++||++.               ....+.+.+|.++|+.+..+|+|.++.+-+.|.
T Consensus       188 qv~sggIdn~ikvWd~r~---------------~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~  238 (338)
T KOG0265|consen  188 QVISGGIDNDIKVWDLRK---------------NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN  238 (338)
T ss_pred             ceeeccccCceeeecccc---------------CcceEEeecccCceeeEEeccCCCccccccccc
Confidence            999999999999999954               678899999999999999999999999888773

>KOG1446|consensus

Probab=99.97  E-value=4.4e-28  Score=170.69  Aligned_cols=228  Identities=16%  Similarity=0.246  Sum_probs=181.4

Q ss_pred             CeEEEEEcC-CCeEEEecC--CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           5 PITHVVVTK-TDFVITASN--DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      .|..+.|.. .+.++.++.  |.+|+..++.+.  +.++.|.||...|+.|+.+|-+..+++++.|++|++||++..++.
T Consensus        58 G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq  135 (311)
T KOG1446|consen   58 GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ  135 (311)
T ss_pred             cccEEEEecCCceEEEccCCCCCceEEEEeecC--ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc
Confidence            466677766 566666665  889999999988  999999999999999999998899999999999999999977776


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC--ceeeEEeec-CCcceEEEEEEeCCCCceEEEEecC
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN--DMINMIKLD-FTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ..+.....+  +.++.|.|-.++.+    .....|++||++.-  .+...+... ........+.|+|+|++  ++.++.
T Consensus       136 g~l~~~~~p--i~AfDp~GLifA~~----~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~--iLlsT~  207 (311)
T KOG1446|consen  136 GLLNLSGRP--IAAFDPEGLIFALA----NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS--ILLSTN  207 (311)
T ss_pred             eEEecCCCc--ceeECCCCcEEEEe----cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE--EEEEeC
Confidence            666554443  56677766444433    45559999999964  455555544 33447789999999997  444556


Q ss_pred             CCeEEEEEccCCCccceeeccCcccC---eEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKP---VVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF  235 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
                      .+.+++.|.- .|..+..+. .+...   -.+.+|+||++++++|+.||+|.+|+++               ++..+..+
T Consensus       208 ~s~~~~lDAf-~G~~~~tfs-~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~---------------tg~~v~~~  270 (311)
T KOG1446|consen  208 ASFIYLLDAF-DGTVKSTFS-GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE---------------TGKKVAVL  270 (311)
T ss_pred             CCcEEEEEcc-CCcEeeeEe-eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC---------------CCcEeeEe
Confidence            8899999998 888888886 44332   2567899999999999999999999994               47778888


Q ss_pred             CC-CccceeeeeECCCCceEEEeec
Q psy6859         236 AK-NKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       236 ~~-~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ++ +..++.++.|+|.-.++++++.
T Consensus       271 ~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  271 RGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             cCCCCCCccccccCCceeeeeecCc
Confidence            87 7899999999999888888864

>KOG0283|consensus

Probab=99.97  E-value=1.8e-29  Score=197.96  Aligned_cols=202  Identities=15%  Similarity=0.300  Sum_probs=170.0

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||...|..|.||.+++|++++.|.+|++|++...  +++..|. |.+-|+|++|+| |.+|+++|+-|+.+|||++...+
T Consensus       367 GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~--~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~  443 (712)
T KOG0283|consen  367 GHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK--ECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK  443 (712)
T ss_pred             ccchhheecccccCCeeEeccccccEEeecCCCc--ceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence            8999999999999899999999999999999987  8999987 999999999999 88999999999999999998877


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC------cceEEEEEEeCCCCceEE
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT------PLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  153 (261)
                      .+.-..++ .-++.+++.|+|+..+.+    +.+|.+++|+....+.........+      ...|+.+.|.|....-++
T Consensus       444 Vv~W~Dl~-~lITAvcy~PdGk~avIG----t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vL  518 (712)
T KOG0283|consen  444 VVDWNDLR-DLITAVCYSPDGKGAVIG----TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVL  518 (712)
T ss_pred             eEeehhhh-hhheeEEeccCCceEEEE----EeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEE
Confidence            66655544 558899999999877666    8999999999998877766654332      237999999977664444


Q ss_pred             EEecCCCeEEEEEccCCCccceeeccCccc--CeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         154 VSDQDSSHVHIYDCKGNGTPLHVLDRLHTK--PVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       154 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      + .+.|..|+|||.+ +..++..|+ +...  .-....|+.||++|+++++|..|++|+...
T Consensus       519 V-TSnDSrIRI~d~~-~~~lv~KfK-G~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  519 V-TSNDSRIRIYDGR-DKDLVHKFK-GFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             E-ecCCCceEEEecc-chhhhhhhc-ccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            4 4679999999998 778888887 4322  235568999999999999999999999743

>KOG0288|consensus

Probab=99.97  E-value=7.8e-31  Score=190.39  Aligned_cols=231  Identities=16%  Similarity=0.186  Sum_probs=190.8

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      |.+.|..+.|-+ ...|++|+.|..|++|++.......+.++.+..++|+.+.|.++++++++++.|+.+++|++.+.+.
T Consensus       174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~  253 (459)
T KOG0288|consen  174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL  253 (459)
T ss_pred             cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhh
Confidence            788999999999 5899999999999999998875568888998899999999999999999999999999999999999


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ..++..|...++...+......    +++|+.|.+|++||+....+.+++-...   .+..+..++.    .+++|..|+
T Consensus       254 ~~TLsGHtdkVt~ak~~~~~~~----vVsgs~DRtiK~WDl~k~~C~kt~l~~S---~cnDI~~~~~----~~~SgH~Dk  322 (459)
T KOG0288|consen  254 RHTLSGHTDKVTAAKFKLSHSR----VVSGSADRTIKLWDLQKAYCSKTVLPGS---QCNDIVCSIS----DVISGHFDK  322 (459)
T ss_pred             hhhhcccccceeeehhhccccc----eeeccccchhhhhhhhhhheeccccccc---cccceEecce----eeeeccccc
Confidence            9999988777777666555444    3456999999999999987776654322   3444444432    288999999


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC---
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK---  237 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---  237 (261)
                      +|++||.+ ...+...++  ..+.|+++..++++..|.+++.|.++.+.|+++.               +....+..   
T Consensus       323 kvRfwD~R-s~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---------------eI~~~~sA~g~  384 (459)
T KOG0288|consen  323 KVRFWDIR-SADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---------------EIRQTFSAEGF  384 (459)
T ss_pred             ceEEEecc-CCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccc---------------cEEEEeecccc
Confidence            99999999 888998885  4559999999999999999999999999999763               22222221   


Q ss_pred             -CccceeeeeECCCCceEEEeecCC
Q psy6859         238 -NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       238 -~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                       .....+.+.|||++.|+|+||.||
T Consensus       385 k~asDwtrvvfSpd~~YvaAGS~dg  409 (459)
T KOG0288|consen  385 KCASDWTRVVFSPDGSYVAAGSADG  409 (459)
T ss_pred             ccccccceeEECCCCceeeeccCCC
Confidence             223478899999999999999997

>KOG0646|consensus

Probab=99.97  E-value=4e-29  Score=184.11  Aligned_cols=223  Identities=13%  Similarity=0.178  Sum_probs=181.0

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc----
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN----   77 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~----   77 (261)
                      .++|.|++-+| |.+|+.|+..|.|++|.+.++  .++..+.+|-.+|+++.|+.|+.+|++|+.||.|.+|.+.+    
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccc--cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            46799999999 888888889999999999998  88888899999999999999999999999999999998742    


Q ss_pred             -----cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          78 -----FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        78 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                           -++...+..|.-++..+.+.+.+  ..+..++.+.|.++++||+..+..+..+..   |..+.+++.+|-...  
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg--~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---p~si~av~lDpae~~--  231 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGG--TNARLYTASEDRTIKLWDLSLGVLLLTITF---PSSIKAVALDPAERV--  231 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCC--ccceEEEecCCceEEEEEeccceeeEEEec---CCcceeEEEcccccE--
Confidence                 23444555555555555554433  233345559999999999999998888874   457899999999875  


Q ss_pred             EEEecCCCeEEEEEccCCC---------------ccceeeccCccc--CeEEEEEcCCCCEEEEEcCCCeEEEeeccccc
Q psy6859         153 AVSDQDSSHVHIYDCKGNG---------------TPLHVLDRLHTK--PVVLIKFNPIYQVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~---------------~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  215 (261)
                      +..|+.+|.|.+.++....               ..+..+. +|.+  +|++++++-||.+|++|+.||.+.|||+    
T Consensus       232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi----  306 (476)
T KOG0646|consen  232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-GHENESAITCLAISTDGTLLLSGDEDGKVCVWDI----  306 (476)
T ss_pred             EEecCCcceEEeeehhcCCcccccccccccccccceeeeec-cccCCcceeEEEEecCccEEEeeCCCCCEEEEec----
Confidence            8899999999998876211               2234444 7777  9999999999999999999999999999    


Q ss_pred             ccCCeeeeeecccccceeecCCCccceeeeeECCC
Q psy6859         216 FKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPD  250 (261)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  250 (261)
                                 .+.++++++....++|+.+.+.|-
T Consensus       307 -----------~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  307 -----------YSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             -----------chHHHHHHHhhhccccceeEeecc
Confidence                       447788888767788888888664

>KOG0293|consensus

Probab=99.97  E-value=2.5e-29  Score=182.94  Aligned_cols=202  Identities=15%  Similarity=0.223  Sum_probs=153.0

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ||..+|..+.||| +++|++++.|..+.+||+.++  .....+. +|...+.+++|.|||..+++|+.|+++..||+. |
T Consensus       267 gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg--d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-g  343 (519)
T KOG0293|consen  267 GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG--DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-G  343 (519)
T ss_pred             cccCceEEEEECCCCCeEEecCchHheeeccCCcc--hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-c
Confidence            7999999999999 899999999999999999997  4444443 245789999999999999999999999999985 4


Q ss_pred             ceeeeeec-cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC----------------------------------
Q psy6859          79 DMINMIKL-DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG----------------------------------  123 (261)
Q Consensus        79 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~----------------------------------  123 (261)
                      ..+...+. ....+..+.+.++|..++.+    ..|..|++++.++                                  
T Consensus       344 n~~~~W~gvr~~~v~dlait~Dgk~vl~v----~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei  419 (519)
T KOG0293|consen  344 NILGNWEGVRDPKVHDLAITYDGKYVLLV----TVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI  419 (519)
T ss_pred             chhhcccccccceeEEEEEcCCCcEEEEE----ecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence            44443332 12335667777788777766    4555555555443                                  


Q ss_pred             -------CceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-
Q psy6859         124 -------NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-  195 (261)
Q Consensus       124 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  195 (261)
                             ...++.+.++.....+..-+|-.... .++++|++|+.|+||+.. +++++.++. +|...|++++|+|... 
T Consensus       420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~-~fiaSGSED~kvyIWhr~-sgkll~~Ls-GHs~~vNcVswNP~~p~  496 (519)
T KOG0293|consen  420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND-KFIASGSEDSKVYIWHRI-SGKLLAVLS-GHSKTVNCVSWNPADPE  496 (519)
T ss_pred             EEeecchhhHHHHhhcccccceEEEeccCCCCc-ceEEecCCCceEEEEEcc-CCceeEeec-CCcceeeEEecCCCCHH
Confidence                   33333333333333333334433322 348999999999999999 999999998 9999999999999765 


Q ss_pred             EEEEEcCCCeEEEeecc
Q psy6859         196 VVVSVDKAGILEYWSGY  212 (261)
Q Consensus       196 ~l~~~~~dg~i~iwd~~  212 (261)
                      .+|+++.||+|+||...
T Consensus       497 m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  497 MFASASDDGTIRIWGPS  513 (519)
T ss_pred             HhhccCCCCeEEEecCC
Confidence            77999999999999874

>KOG0269|consensus

Probab=99.97  E-value=2e-29  Score=196.11  Aligned_cols=231  Identities=14%  Similarity=0.219  Sum_probs=184.8

Q ss_pred             eEEEEEcC--CCeEEEecCCCeEEEEeccCCc-eeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEcccccee
Q psy6859           6 ITHVVVTK--TDFVITASNDGHIKFWKKQEEG-IEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         6 v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      +..|.|..  .++|||++..|.|.+||+.... .+.+..|..|+..++++.|++ ...+|++|++||+|++||++..+..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            44567776  6799999999999999998721 155667889999999999987 5568999999999999999998888


Q ss_pred             eeeeccCcceeEEEEeecC-CceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          82 NMIKLDFTPLTVECIHYLG-DAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .++......+..+.+++.. ..++++    ...|.+.+||++... +...+.  .|.+.+.|+.|+|+..+  +++|+.|
T Consensus       170 ~t~~~nSESiRDV~fsp~~~~~F~s~----~dsG~lqlWDlRqp~r~~~k~~--AH~GpV~c~nwhPnr~~--lATGGRD  241 (839)
T KOG0269|consen  170 STFRSNSESIRDVKFSPGYGNKFASI----HDSGYLQLWDLRQPDRCEKKLT--AHNGPVLCLNWHPNREW--LATGGRD  241 (839)
T ss_pred             ccccccchhhhceeeccCCCceEEEe----cCCceEEEeeccCchhHHHHhh--cccCceEEEeecCCCce--eeecCCC
Confidence            8877777777777777754 444444    889999999999753 333333  46678999999998865  9999999


Q ss_pred             CeEEEEEccCCC--ccceeeccCcccCeEEEEEcCCCC-EEEEEc--CCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859         160 SHVHIYDCKGNG--TPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVD--KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       160 ~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                      +.|+|||+. +.  +++.++  ....+|..++|-|..+ .||+++  .|-.|+|||++              +..-+...
T Consensus       242 K~vkiWd~t-~~~~~~~~tI--nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr--------------RPYIP~~t  304 (839)
T KOG0269|consen  242 KMVKIWDMT-DSRAKPKHTI--NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR--------------RPYIPYAT  304 (839)
T ss_pred             ccEEEEecc-CCCccceeEE--eecceeeeeeeccCccchhhhhhccccceEEEEeec--------------ccccccee
Confidence            999999997 44  344555  3668899999999887 456665  67889999997              33566778


Q ss_pred             cCCCccceeeeeECC-CCceEEEeecCC
Q psy6859         235 FAKNKTYPSGLSFSP-DGNKFVTISMDR  261 (261)
Q Consensus       235 ~~~~~~~v~~~~~s~-~~~~l~s~~~Dg  261 (261)
                      +..|...++.++|-. |-..|.+++.||
T Consensus       305 ~~eH~~~vt~i~W~~~d~~~l~s~sKD~  332 (839)
T KOG0269|consen  305 FLEHTDSVTGIAWDSGDRINLWSCSKDG  332 (839)
T ss_pred             eeccCccccceeccCCCceeeEeecCcc
Confidence            888999999999966 567889999986

>KOG0267|consensus

Probab=99.97  E-value=3.6e-30  Score=198.91  Aligned_cols=232  Identities=16%  Similarity=0.258  Sum_probs=203.0

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      |...|.++..-. .+.+++|+.|..+-+|.+...  ..+..|.+|..+|.++.|+++..+|++|+.+|+|++||+...+.
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~  104 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI  104 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhh
Confidence            666677777644 688999999999999998875  56667999999999999999999999999999999999999999


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ++++..+..+...+.++|.+.+.+.    |+.|..+++||++...+...+..  +...+..+.|+|++.+  +++|++|.
T Consensus       105 vrtLtgh~~~~~sv~f~P~~~~~a~----gStdtd~~iwD~Rk~Gc~~~~~s--~~~vv~~l~lsP~Gr~--v~~g~ed~  176 (825)
T KOG0267|consen  105 VRTLTGHLLNITSVDFHPYGEFFAS----GSTDTDLKIWDIRKKGCSHTYKS--HTRVVDVLRLSPDGRW--VASGGEDN  176 (825)
T ss_pred             hhhhhccccCcceeeeccceEEecc----ccccccceehhhhccCceeeecC--CcceeEEEeecCCCce--eeccCCcc
Confidence            9998888877778888888776644    49999999999998888888876  5667899999999987  89999999


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCcc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT  240 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (261)
                      .++|||.. .++.+..|+ .|+..+.++.|+|..-++++|+.|+++++||++               +.+.+........
T Consensus       177 tvki~d~~-agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle---------------tfe~I~s~~~~~~  239 (825)
T KOG0267|consen  177 TVKIWDLT-AGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE---------------TFEVISSGKPETD  239 (825)
T ss_pred             eeeeeccc-ccccccccc-cccccccccccCchhhhhccCCCCceeeeeccc---------------eeEEeeccCCccC
Confidence            99999999 899999998 899999999999999999999999999999994               3556666666778


Q ss_pred             ceeeeeECCCCceEEEeecC
Q psy6859         241 YPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       241 ~v~~~~~s~~~~~l~s~~~D  260 (261)
                      .|.+.+|+|+++.+++|..+
T Consensus       240 ~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  240 GVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CceeeeecCCceeeecCchh
Confidence            99999999999999887543

>KOG4283|consensus

Probab=99.97  E-value=5.9e-28  Score=168.90  Aligned_cols=255  Identities=11%  Similarity=0.143  Sum_probs=192.0

Q ss_pred             CCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCc------e----ee---eEEeeccccceeEEEEee-CCCEEEEEe
Q psy6859           2 HRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEG------I----EF---VKHFRSHLGVIHSICTNY-NGTLLCTVA   65 (261)
Q Consensus         2 H~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~------~----~~---~~~~~~~~~~v~~~~~~~-~~~~l~s~~   65 (261)
                      |.+.|+++...+  ++++++|+.||.|.+||++...      .    .+   ...-.+|.-.|..+.|-| |.-.+.+++
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS  121 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS  121 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence            889999999998  8999999999999999997632      0    01   011245778899999998 666888999


Q ss_pred             CCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEe
Q psy6859          66 SDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYL  145 (261)
Q Consensus        66 ~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (261)
                      .|.++++||.++.+..-.++.+.. +....++|-... -++.+.|..+-.|++.|+.++..-+.+..  +...|.++.|+
T Consensus       122 FDhtlKVWDtnTlQ~a~~F~me~~-VYshamSp~a~s-HcLiA~gtr~~~VrLCDi~SGs~sH~LsG--Hr~~vlaV~Ws  197 (397)
T KOG4283|consen  122 FDHTLKVWDTNTLQEAVDFKMEGK-VYSHAMSPMAMS-HCLIAAGTRDVQVRLCDIASGSFSHTLSG--HRDGVLAVEWS  197 (397)
T ss_pred             ccceEEEeecccceeeEEeecCce-eehhhcChhhhc-ceEEEEecCCCcEEEEeccCCcceeeecc--ccCceEEEEec
Confidence            999999999999998888876543 222233332110 12223458899999999999999888887  45689999999


Q ss_pred             CCCCceEEEEecCCCeEEEEEccCCCccceeec-------------cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         146 GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-------------RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       146 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      |...+ ++++|+.||.|++||++....+...+.             ..|.+.+++++|+.++.++++.+.|..+++|+..
T Consensus       198 p~~e~-vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  198 PSSEW-VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             cCcee-EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence            99986 589999999999999984323333322             2577889999999999999999999999999988


Q ss_pred             cccccCCe--------------------------------eeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         213 KQEFKFPK--------------------------------CVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       213 ~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      .+.....+                                ........+..++.+..|-..|.+.++.|+-+.+.++..|
T Consensus       277 ~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d  356 (397)
T KOG4283|consen  277 SGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMN  356 (397)
T ss_pred             cCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccC
Confidence            76443210                                0112234566677788888888888888887777777666


Q ss_pred             C
Q psy6859         261 R  261 (261)
Q Consensus       261 g  261 (261)
                      +
T Consensus       357 ~  357 (397)
T KOG4283|consen  357 G  357 (397)
T ss_pred             C
Confidence            4

>KOG0300|consensus

Probab=99.96  E-value=2.7e-28  Score=172.52  Aligned_cols=202  Identities=17%  Similarity=0.215  Sum_probs=162.7

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc---
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI---   76 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~---   76 (261)
                      ||++.|+.++... ...+.+++.|.+.+||.++++  .++.++.+|.+.|++++|++.+.++++++.|++..||...   
T Consensus       146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~  223 (481)
T KOG0300|consen  146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW  223 (481)
T ss_pred             ccccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence            8999999999887 678999999999999999998  9999999999999999999999999999999999999721   


Q ss_pred             ---c--------c--------------------------ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEE
Q psy6859          77 ---N--------F--------------------------DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIY  119 (261)
Q Consensus        77 ---~--------~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~  119 (261)
                         .        +                          .++..+..+..++.++.+-..++++++.    +.|.+-.+|
T Consensus       224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTa----SWDRTAnlw  299 (481)
T KOG0300|consen  224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTA----SWDRTANLW  299 (481)
T ss_pred             cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeee----eccccceee
Confidence               1        0                          0111122222333333333345555554    899999999


Q ss_pred             EcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEE
Q psy6859         120 DCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVS  199 (261)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  199 (261)
                      |+++++++..+.++.+  ...-++-+|...  ++++.+.|.+.++||++..-..+..|+ +|...|+++.|..+. .+++
T Consensus       300 DVEtge~v~~LtGHd~--ELtHcstHptQr--LVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~dd-~vVS  373 (481)
T KOG0300|consen  300 DVETGEVVNILTGHDS--ELTHCSTHPTQR--LVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNTDD-RVVS  373 (481)
T ss_pred             eeccCceeccccCcch--hccccccCCcce--EEEEeccCceeEeccchhhcceeeeec-ccccceeEEEEecCC-ceee
Confidence            9999999999988654  455566667765  488999999999999995557788888 999999999998765 4889


Q ss_pred             EcCCCeEEEeecccc
Q psy6859         200 VDKAGILEYWSGYKQ  214 (261)
Q Consensus       200 ~~~dg~i~iwd~~~~  214 (261)
                      |+.|.+|++||+++.
T Consensus       374 gSDDrTvKvWdLrNM  388 (481)
T KOG0300|consen  374 GSDDRTVKVWDLRNM  388 (481)
T ss_pred             cCCCceEEEeeeccc
Confidence            999999999999853

>KOG2445|consensus

Probab=99.96  E-value=3.3e-26  Score=160.85  Aligned_cols=255  Identities=15%  Similarity=0.192  Sum_probs=178.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC--CceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~   75 (261)
                      ||++-|+++.|.+ |+.+|+|+.|++++|||.+.  +...+....+.|.+.|..+.|.+  -|+.+++++.|+++.||.-
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            6999999999999 99999999999999999643  45677788899999999999964  5899999999999999985


Q ss_pred             ccc-------ce--eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc------eeeEEe-----ecCC
Q psy6859          76 INF-------DM--INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND------MINMIK-----LDFT  135 (261)
Q Consensus        76 ~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~------~~~~~~-----~~~~  135 (261)
                      ...       +.  ..++.-....+..+.|.|.  .+-...++++.||.++||+...--      +...++     ...+
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~--hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPK--HLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             cccccccccceeEEEEEeecCCcceeEEEecch--hcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            211       11  2233333334444455443  222333445899999999865432      222222     1112


Q ss_pred             cceEEEEEEeCCCC-ceEEEEecCC-----CeEEEEEccCCC---ccceeeccCcccCeEEEEEcCCC----CEEEEEcC
Q psy6859         136 PLTVECIHYLGDAI-PTAAVSDQDS-----SHVHIYDCKGNG---TPLHVLDRLHTKPVVLIKFNPIY----QVVVSVDK  202 (261)
Q Consensus       136 ~~~~~~~~~~~~~~-~~~~~~~~~d-----~~i~i~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~  202 (261)
                      .....|+.|+|... ..+++.|+.+     +.++||.....+   ..+.++. +|..+|++|+|.|+-    ..||+++.
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeec
Confidence            23567888886532 2336666644     478999876344   2345665 899999999999963    37899999


Q ss_pred             CCeEEEeeccccccc-------CCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         203 AGILEYWSGYKQEFK-------FPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       203 dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      || |+||.+....-.       .+. ...+ ..-+.+..+.+|.+.|+.+.|+-.|..|++.|.||
T Consensus       248 Dg-v~I~~v~~~~s~i~~ee~~~~~-~~~~-l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG  310 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIEEEEVLAPD-LMTD-LPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG  310 (361)
T ss_pred             Cc-EEEEEEeeccchhhhhcccCCC-Cccc-cceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence            99 999998742110       010 0000 11234566788999999999999999999999997

>KOG0294|consensus

Probab=99.96  E-value=5.6e-27  Score=165.15  Aligned_cols=198  Identities=20%  Similarity=0.376  Sum_probs=168.3

Q ss_pred             CCCCeEEEEEcC-C--CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           2 HRSPITHVVVTK-T--DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         2 H~~~v~~~~~~~-~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      |.+.|+++.|.+ -  ..|++|+.||.|.+|+....  +++..+++|.+.|+.++.+|.+++-++.+.|+.+++||+-+|
T Consensus        82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G  159 (362)
T KOG0294|consen   82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG  159 (362)
T ss_pred             cccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence            889999999997 3  38999999999999999876  999999999999999999999999999999999999999999


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      +.-....+...+. .+.+.+.|++++..     ....|-+|.+.+......+..   +..+.++.|...+.   +++|.+
T Consensus       160 r~a~v~~L~~~at-~v~w~~~Gd~F~v~-----~~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l~~~~---L~vG~d  227 (362)
T KOG0294|consen  160 RVAFVLNLKNKAT-LVSWSPQGDHFVVS-----GRNKIDIYQLDNASVFREIEN---PKRILCATFLDGSE---LLVGGD  227 (362)
T ss_pred             ccceeeccCCcce-eeEEcCCCCEEEEE-----eccEEEEEecccHhHhhhhhc---cccceeeeecCCce---EEEecC
Confidence            8777666655544 46666888866654     577899999988776666553   35678888877665   888899


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEE--cCCCCEEEEEcCCCeEEEeeccccc
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKF--NPIYQVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~  215 (261)
                      |+.|.+||.. ...+...+. +|+.+|.++.+  .|++.+|++++.||.|++||++...
T Consensus       228 ~~~i~~~D~d-s~~~~~~~~-AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  228 NEWISLKDTD-SDTPLTEFL-AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             CceEEEeccC-CCccceeee-cchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence            9999999998 788999997 99999999974  4678899999999999999997653

>KOG1036|consensus

Probab=99.96  E-value=9.4e-27  Score=163.45  Aligned_cols=232  Identities=13%  Similarity=0.156  Sum_probs=176.1

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ++.|.+|.|+| .+.|+.++.||++++|++...  .....++ |..++.+++|.++ ..+++|+.||.|+.+|+.+++..
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce
Confidence            46799999999 788888899999999999986  5555665 8899999999874 57999999999999999887655


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      .. ..+..++.++...+..+.+++.    +.|++|++||.+.......+.   .+..|.++....+.    ++.|+.+..
T Consensus        89 ~i-gth~~~i~ci~~~~~~~~vIsg----sWD~~ik~wD~R~~~~~~~~d---~~kkVy~~~v~g~~----LvVg~~~r~  156 (323)
T KOG1036|consen   89 QI-GTHDEGIRCIEYSYEVGCVISG----SWDKTIKFWDPRNKVVVGTFD---QGKKVYCMDVSGNR----LVVGTSDRK  156 (323)
T ss_pred             ee-ccCCCceEEEEeeccCCeEEEc----ccCccEEEEeccccccccccc---cCceEEEEeccCCE----EEEeecCce
Confidence            43 3355667777666555555554    999999999999855444444   34488888888777    788888999


Q ss_pred             EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc--
Q psy6859         162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK--  239 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  239 (261)
                      +.+||++....+.+.-+...+..+.++++-|++.-.++++-||.|.+=.++....           .....+.++.|.  
T Consensus       157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~-----------~~skkyaFkCHr~~  225 (323)
T KOG1036|consen  157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE-----------AQSKKYAFKCHRLS  225 (323)
T ss_pred             EEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchH-----------HhhhceeEEeeecc
Confidence            9999999444444333335677899999999888889999999988766644211           111122222232  


Q ss_pred             -------cceeeeeECCCCceEEEeecCC
Q psy6859         240 -------TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 -------~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                             -+|++++|+|-...|||||.||
T Consensus       226 ~~~~~~~yPVNai~Fhp~~~tfaTgGsDG  254 (323)
T KOG1036|consen  226 EKDTEIIYPVNAIAFHPIHGTFATGGSDG  254 (323)
T ss_pred             cCCceEEEEeceeEeccccceEEecCCCc
Confidence                   4799999999999999999997

>KOG2055|consensus

Probab=99.96  E-value=3.3e-27  Score=173.99  Aligned_cols=235  Identities=14%  Similarity=0.185  Sum_probs=191.8

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEcccccee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      +.|++|.|+| ...|++++.|++++||.++......+..+.-...+|.+.+|.|+|+ .+++++....++.||+.+.+..
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~  293 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT  293 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence            6899999999 7899999999999999998765466777766678999999999998 8999999999999999887654


Q ss_pred             eeeec---cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          82 NMIKL---DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        82 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      +.-..   .........++++++.++..    +..|.|.+....+++.+..++..   +.+..+.|+.++..  +++.+.
T Consensus       294 k~~~~~g~e~~~~e~FeVShd~~fia~~----G~~G~I~lLhakT~eli~s~Kie---G~v~~~~fsSdsk~--l~~~~~  364 (514)
T KOG2055|consen  294 KLKPPYGVEEKSMERFEVSHDSNFIAIA----GNNGHIHLLHAKTKELITSFKIE---GVVSDFTFSSDSKE--LLASGG  364 (514)
T ss_pred             cccCCCCcccchhheeEecCCCCeEEEc----ccCceEEeehhhhhhhhheeeec---cEEeeEEEecCCcE--EEEEcC
Confidence            43221   22335556678888877776    89999999999999999999864   48899999999975  444455


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCe--EEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPV--VLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      +|.|.+||++ ...+++.+.  .++.|  ++++.+++++|||+|+..|.|.|||.++-         +.....++++.+.
T Consensus       365 ~GeV~v~nl~-~~~~~~rf~--D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~---------~~s~~PkPik~~d  432 (514)
T KOG2055|consen  365 TGEVYVWNLR-QNSCLHRFV--DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC---------FASTNPKPIKTVD  432 (514)
T ss_pred             CceEEEEecC-CcceEEEEe--ecCccceeeeeecCCCceEEeccCcceEEEeccchh---------hccCCCCchhhhh
Confidence            8999999999 788888885  33333  66788899999999999999999997531         1113467788887


Q ss_pred             CCccceeeeeECCCCceEEEeec
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      .-...|+++.|+||.+.||.+|.
T Consensus       433 NLtt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  433 NLTTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             hhheeeeeeeeCcchhhhhhhhh
Confidence            78889999999999999998875

>KOG0299|consensus

Probab=99.96  E-value=4.3e-27  Score=173.18  Aligned_cols=243  Identities=15%  Similarity=0.193  Sum_probs=189.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCcee---------------eeEEe-eccccceeEEEEeeCCCEEEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIE---------------FVKHF-RSHLGVIHSICTNYNGTLLCT   63 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~---------------~~~~~-~~~~~~v~~~~~~~~~~~l~s   63 (261)
                      .|+-+|.+++++| +.+.++++.|++|.-|++.++...               +...- +.|...+.+++.++|++||++
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence            4889999999999 899999999999999998764211               00111 378889999999999999999


Q ss_pred             EeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEE
Q psy6859          64 VASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIH  143 (261)
Q Consensus        64 ~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  143 (261)
                      |+.|..|.||+..+.+.++.++.+...+...++....+.++++    +.|+.+++|+++....+.++-.  ++..|..+.
T Consensus       220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~----s~Drsvkvw~~~~~s~vetlyG--Hqd~v~~Id  293 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSA----SADRSVKVWSIDQLSYVETLYG--HQDGVLGID  293 (479)
T ss_pred             cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeee----ecCCceEEEehhHhHHHHHHhC--Cccceeeec
Confidence            9999999999999999999999999999999998888888777    9999999999998777666654  556788888


Q ss_pred             EeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeee
Q psy6859         144 YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVH  223 (261)
Q Consensus       144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  223 (261)
                      .......  +-+|+.|+++++|++. .. ..-.+. ++...+-+++|-.+ ..+++|+.+|.|.+|++...+..+...  
T Consensus       294 aL~reR~--vtVGgrDrT~rlwKi~-ee-sqlifr-g~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~--  365 (479)
T KOG0299|consen  294 ALSRERC--VTVGGRDRTVRLWKIP-EE-SQLIFR-GGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSR--  365 (479)
T ss_pred             hhcccce--EEeccccceeEEEecc-cc-ceeeee-CCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEee--
Confidence            7777762  5566799999999996 32 222343 78889999999754 579999999999999986532211100  


Q ss_pred             eecccccceeec---CCCccceeeeeECCCCceEEEeecCC
Q psy6859         224 FESKLDTDLFEF---AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       224 ~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                          ....+...   ..+..+|++++..|...++|+||.+|
T Consensus       366 ----~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G  402 (479)
T KOG0299|consen  366 ----LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG  402 (479)
T ss_pred             ----ccccccCCccccccccceeeeEecccCceEEecCCCC
Confidence                00001000   11235899999999999999999886

>KOG0305|consensus

Probab=99.96  E-value=3.4e-27  Score=180.26  Aligned_cols=203  Identities=11%  Similarity=0.146  Sum_probs=178.7

Q ss_pred             CCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         2 H~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      |...|-+++|+ +..+.+|+.|+.|..+|+.... .....+.+|...|..++|++|++++|+|+.|+.+.|||....++.
T Consensus       259 h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~-~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~  336 (484)
T KOG0305|consen  259 HASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQ-HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK  336 (484)
T ss_pred             cCceeEEEecc-CceEEEecCCCcEEEEEEecch-hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence            89999999998 5679999999999999998753 223358899999999999999999999999999999999888888


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      ..+..+...+..+.+.|....+++. ..|+.|+.|++||..++..+..+..   ...|+.+.|++....++...|..++.
T Consensus       337 ~~~~~H~aAVKA~awcP~q~~lLAs-GGGs~D~~i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sthG~s~n~  412 (484)
T KOG0305|consen  337 FTFTEHTAAVKALAWCPWQSGLLAT-GGGSADRCIKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTHGYSENQ  412 (484)
T ss_pred             EEEeccceeeeEeeeCCCccCceEE-cCCCcccEEEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEecCCCCCc
Confidence            8888888888889998877666554 3467899999999999988887764   44899999999998866777778889


Q ss_pred             EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      |.||+.. +.+++..+. +|...|..++++|||..+++|+.|.++++|++-
T Consensus       413 i~lw~~p-s~~~~~~l~-gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  413 ITLWKYP-SMKLVAELL-GHTSRVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             EEEEecc-ccceeeeec-CCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence            9999998 888888887 999999999999999999999999999999984

>KOG0301|consensus

Probab=99.96  E-value=4.4e-27  Score=181.13  Aligned_cols=228  Identities=19%  Similarity=0.251  Sum_probs=191.9

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeE-EEEee-CCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHS-ICTNY-NGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ||+..|..+++.++..++++|.||++++|+-...+......+.+|.+-|.. +++.+ ++-.+++|+.|.++.+|...+.
T Consensus        12 gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~   91 (745)
T KOG0301|consen   12 GHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA   91 (745)
T ss_pred             cCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC
Confidence            799999999998877899999999999999877655555677888888877 88876 4446999999999999999999


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      .+...++.|...+++.....++.     .+|||.|.++++|-+..  +...+  ..|+..|.++..-|+..   +++|+.
T Consensus        92 ~P~~~LkgH~snVC~ls~~~~~~-----~iSgSWD~TakvW~~~~--l~~~l--~gH~asVWAv~~l~e~~---~vTgsa  159 (745)
T KOG0301|consen   92 EPLYTLKGHKSNVCSLSIGEDGT-----LISGSWDSTAKVWRIGE--LVYSL--QGHTASVWAVASLPENT---YVTGSA  159 (745)
T ss_pred             CchhhhhccccceeeeecCCcCc-----eEecccccceEEecchh--hhccc--CCcchheeeeeecCCCc---EEeccC
Confidence            99999988877666655544433     34569999999998653  33333  44677899999999985   899999


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN  238 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (261)
                      |.+|++|.   .++.+++|. +|...|+.+++-|++ .+++++.||.|++|++.                ++++.++.+|
T Consensus       160 DKtIklWk---~~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~----------------ge~l~~~~gh  218 (745)
T KOG0301|consen  160 DKTIKLWK---GGTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD----------------GEVLLEMHGH  218 (745)
T ss_pred             cceeeecc---CCchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEecc----------------Cceeeeeecc
Confidence            99999997   468899998 999999999999875 47889999999999973                7889999999


Q ss_pred             ccceeeeeECCCCceEEEeecCC
Q psy6859         239 KTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       239 ~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +..|.++...+++..++++|+||
T Consensus       219 tn~vYsis~~~~~~~Ivs~gEDr  241 (745)
T KOG0301|consen  219 TNFVYSISMALSDGLIVSTGEDR  241 (745)
T ss_pred             ceEEEEEEecCCCCeEEEecCCc
Confidence            99999999888889999999996

>KOG0772|consensus

Probab=99.96  E-value=4.4e-27  Score=175.74  Aligned_cols=234  Identities=16%  Similarity=0.200  Sum_probs=181.8

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeE------------EeeccccceeEEEEeeC-CCEEEEEeCCCc
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVK------------HFRSHLGVIHSICTNYN-GTLLCTVASDKA   69 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~------------~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~   69 (261)
                      ..|++++|++ ++.|++.+.....+|+|-+..  +...            .-++|...+++.+|+|+ .+.+++++.||+
T Consensus       215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~--~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt  292 (641)
T KOG0772|consen  215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGF--EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT  292 (641)
T ss_pred             cccceeeecCCCCeEEEEecCcceeEEccCCc--eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence            4789999999 888888888889999998764  2222            23679999999999995 457999999999


Q ss_pred             EEEEEccccc-eeeeee-----ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee---EEeecCCcceEE
Q psy6859          70 MKVFDVINFD-MINMIK-----LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN---MIKLDFTPLTVE  140 (261)
Q Consensus        70 v~~wd~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~  140 (261)
                      +|+||+.+.+ ..+.++     ...-+...+.+++++..++++    ..||.|.+|+..+.....   .-..|.....|.
T Consensus       293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAag----c~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~It  368 (641)
T KOG0772|consen  293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAG----CLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDIT  368 (641)
T ss_pred             EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhc----ccCCceeeeecCCcccccceEeeeccCCCCcee
Confidence            9999997643 333333     233467788899999988776    899999999986543222   223444445899


Q ss_pred             EEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCc--ccCeEEEEEcCCCCEEEEEc------CCCeEEEeecc
Q psy6859         141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLH--TKPVVLIKFNPIYQVVVSVD------KAGILEYWSGY  212 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~  212 (261)
                      |+.|++++.+  +++-+.|+++++||++...+++.... +.  ..+-+.++|||+.++|++|.      ..|.+.+||..
T Consensus       369 si~FS~dg~~--LlSRg~D~tLKvWDLrq~kkpL~~~t-gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~  445 (641)
T KOG0772|consen  369 SISFSYDGNY--LLSRGFDDTLKVWDLRQFKKPLNVRT-GLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM  445 (641)
T ss_pred             EEEeccccch--hhhccCCCceeeeeccccccchhhhc-CCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence            9999999997  88999999999999997678887765 32  33457789999999999976      34678999873


Q ss_pred             cccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         213 KQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                     +...++.+.-....|..+.|+|.-+.|..++.||
T Consensus       446 ---------------t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG  479 (641)
T KOG0772|consen  446 ---------------TLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG  479 (641)
T ss_pred             ---------------ceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence                           3566666666678899999999988888888876

>KOG0301|consensus

Probab=99.96  E-value=6.2e-27  Score=180.32  Aligned_cols=223  Identities=15%  Similarity=0.171  Sum_probs=184.9

Q ss_pred             CCCCCeEE-EEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITH-VVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~-~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      ||.+-|.+ ++|-+  +..+++|+.|.+|.+|.....  .+...+++|++.|.++....++. +++||.|.++++|..  
T Consensus        55 ~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--  129 (745)
T KOG0301|consen   55 GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--  129 (745)
T ss_pred             cCcceeeccceeccccCcceEeecccceEEEEecCCC--CchhhhhccccceeeeecCCcCc-eEecccccceEEecc--
Confidence            45566666 77776  446999999999999999887  89999999999999999888876 999999999999985  


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      +++...++.|..++..+..-+.+ .+++    |+.|++|++|.-  ++.++++..  |...|+.+++.++..   +++++
T Consensus       130 ~~l~~~l~gH~asVWAv~~l~e~-~~vT----gsaDKtIklWk~--~~~l~tf~g--HtD~VRgL~vl~~~~---flScs  197 (745)
T KOG0301|consen  130 GELVYSLQGHTASVWAVASLPEN-TYVT----GSADKTIKLWKG--GTLLKTFSG--HTDCVRGLAVLDDSH---FLSCS  197 (745)
T ss_pred             hhhhcccCCcchheeeeeecCCC-cEEe----ccCcceeeeccC--Cchhhhhcc--chhheeeeEEecCCC---eEeec
Confidence            45566677777777766665555 3334    499999999985  667888877  556899999999965   89999


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      .||.|++|++  ++..+.++. +|++.+.++...++++.++++++|++++||+.                 +++.+.+.-
T Consensus       198 NDg~Ir~w~~--~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~-----------------~e~~q~I~l  257 (745)
T KOG0301|consen  198 NDGSIRLWDL--DGEVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRTLRIWKK-----------------DECVQVITL  257 (745)
T ss_pred             CCceEEEEec--cCceeeeee-ccceEEEEEEecCCCCeEEEecCCceEEEeec-----------------CceEEEEec
Confidence            9999999999  567777776 99999999998889999999999999999986                 467777776


Q ss_pred             CccceeeeeECCCCceEEEeecCC
Q psy6859         238 NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ....|+++.+-++|. |++|+.||
T Consensus       258 PttsiWsa~~L~NgD-Ivvg~SDG  280 (745)
T KOG0301|consen  258 PTTSIWSAKVLLNGD-IVVGGSDG  280 (745)
T ss_pred             CccceEEEEEeeCCC-EEEeccCc
Confidence            677999999999887 45666665

>KOG0264|consensus

Probab=99.96  E-value=4.7e-27  Score=172.63  Aligned_cols=206  Identities=16%  Similarity=0.223  Sum_probs=167.5

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCc-----eeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEE
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEG-----IEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKV   72 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~   72 (261)
                      ||++.=++++|++  ...|++++.|++|++||+...+     ..+...+.+|.+.|..++|++ +...+++++.|+.+.|
T Consensus       175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i  254 (422)
T KOG0264|consen  175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI  254 (422)
T ss_pred             eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence            6888788899998  4589999999999999997632     345677899999999999998 5668999999999999


Q ss_pred             EEcc--ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEEEEeCCCC
Q psy6859          73 FDVI--NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECIHYLGDAI  149 (261)
Q Consensus        73 wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  149 (261)
                      ||++  +.+.....+.+..++.++.+.|.+..+++.   |+.|++|.+||+|+-. ++..+..  +...|.++.|+|...
T Consensus       255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT---~S~D~tV~LwDlRnL~~~lh~~e~--H~dev~~V~WSPh~e  329 (422)
T KOG0264|consen  255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILAT---GSADKTVALWDLRNLNKPLHTFEG--HEDEVFQVEWSPHNE  329 (422)
T ss_pred             EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEe---ccCCCcEEEeechhcccCceeccC--CCcceEEEEeCCCCC
Confidence            9999  455566666778889999999988766544   6889999999999764 4445444  566899999999988


Q ss_pred             ceEEEEecCCCeEEEEEccCCCc-------------cceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeeccc
Q psy6859         150 PTAAVSDQDSSHVHIYDCKGNGT-------------PLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  213 (261)
                      . ++++++.|+.+.+||+..-++             ++..- .+|...|..+.|+|+.. .|++.++|+.+.||++..
T Consensus       330 t-vLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H-gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  330 T-VLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH-GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             c-eeEecccCCcEEEEeccccccccChhhhccCCcceeEEe-cCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            5 577777899999999973222             22333 38999999999999988 568899999999999853

>KOG0643|consensus

Probab=99.95  E-value=6.5e-26  Score=156.48  Aligned_cols=199  Identities=15%  Similarity=0.171  Sum_probs=170.6

Q ss_pred             EeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEE
Q psy6859          41 HFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD  120 (261)
Q Consensus        41 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d  120 (261)
                      .+++|+.+++.+.++.+|.+|++|+.|.+..+|-..+|+.+-++..|...+.++.+..+.+.+++.    +.|.++++||
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTG----SAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITG----SADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeec----cccceeEEEE
Confidence            467899999999999999999999999999999998999999999999999999998888877766    9999999999


Q ss_pred             cCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE---ecCCCeEEEEEccCC------CccceeeccCcccCeEEEEEc
Q psy6859         121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS---DQDSSHVHIYDCKGN------GTPLHVLDRLHTKPVVLIKFN  191 (261)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~v~~~~~~  191 (261)
                      +++++.+..++.   +..+..+.|++++...++.+   -+..+.|.++|++..      ..|+..+. .+...++.+-|.
T Consensus        81 v~tGk~la~~k~---~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg  156 (327)
T KOG0643|consen   81 VETGKQLATWKT---NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWG  156 (327)
T ss_pred             cCCCcEEEEeec---CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeec
Confidence            999999999885   45889999999998533322   133567999999832      24566776 788999999999


Q ss_pred             CCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         192 PIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       192 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |-+++|++|.+||.|.+||++++              .+.+...+.|...|+.+.++||..+++++|.|.
T Consensus       157 ~l~~~ii~Ghe~G~is~~da~~g--------------~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt  212 (327)
T KOG0643|consen  157 PLGETIIAGHEDGSISIYDARTG--------------KELVDSDEEHSSKINDLQFSRDRTYFITGSKDT  212 (327)
T ss_pred             ccCCEEEEecCCCcEEEEEcccC--------------ceeeechhhhccccccccccCCcceEEecccCc
Confidence            99999999999999999999653              345555567999999999999999999999884

>KOG0639|consensus

Probab=99.95  E-value=3.7e-27  Score=175.88  Aligned_cols=232  Identities=14%  Similarity=0.180  Sum_probs=187.4

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-eeeeEEeec--cccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG-IEFVKHFRS--HLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      |-+-|.++.++. .+++.||+. |.|+|||+...+ ..++..+..  ....|.++...|||+.|++|+.-.++.|||+..
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa  496 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA  496 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence            667788888887 888999886 899999997632 234444432  346789999999999999999999999999987


Q ss_pred             cceeeeeeccC--cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          78 FDMINMIKLDF--TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        78 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      .......++..  .....+.++++.+..+++    ..||.|.|||+.+...++.++.+  +....|+..++++..  +.+
T Consensus       497 pTprikaeltssapaCyALa~spDakvcFsc----csdGnI~vwDLhnq~~VrqfqGh--tDGascIdis~dGtk--lWT  568 (705)
T KOG0639|consen  497 PTPRIKAELTSSAPACYALAISPDAKVCFSC----CSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISKDGTK--LWT  568 (705)
T ss_pred             CCcchhhhcCCcchhhhhhhcCCccceeeee----ccCCcEEEEEcccceeeecccCC--CCCceeEEecCCCce--eec
Confidence            65443333332  334455667776644444    89999999999999999988874  456789999999987  999


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF  235 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
                      |+-|++|+-||++ .++.+...  .....|.++.++|++.+|+.|.+++.+.+....                +...+.+
T Consensus       569 GGlDntvRcWDlr-egrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~s----------------kp~kyql  629 (705)
T KOG0639|consen  569 GGLDNTVRCWDLR-EGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS----------------KPEKYQL  629 (705)
T ss_pred             CCCccceeehhhh-hhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecC----------------Cccceee
Confidence            9999999999999 88777766  467889999999999999999999999888753                4555677


Q ss_pred             CCCccceeeeeECCCCceEEEeecCC
Q psy6859         236 AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       236 ~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..|+.-|.++.|.+.|+++++.|.|+
T Consensus       630 hlheScVLSlKFa~cGkwfvStGkDn  655 (705)
T KOG0639|consen  630 HLHESCVLSLKFAYCGKWFVSTGKDN  655 (705)
T ss_pred             cccccEEEEEEecccCceeeecCchh
Confidence            78999999999999999999999885

>KOG0302|consensus

Probab=99.95  E-value=2.8e-26  Score=165.28  Aligned_cols=254  Identities=13%  Similarity=0.152  Sum_probs=184.5

Q ss_pred             CCCCCeEEEEEcC-C--CeEEEecCCCeEEEEeccC--------------CceeeeEEeeccccceeEEEEeeC-CCEEE
Q psy6859           1 MHRSPITHVVVTK-T--DFVITASNDGHIKFWKKQE--------------EGIEFVKHFRSHLGVIHSICTNYN-GTLLC   62 (261)
Q Consensus         1 gH~~~v~~~~~~~-~--~~l~s~~~d~~i~iw~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~   62 (261)
                      +|.+.|+.+..++ +  .+.++-+..|.|.||++..              ...+++.++.+|.+.=..|+|+|- .-.|+
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            4788888888887 5  3677778999999999753              124677888999998899999992 22588


Q ss_pred             EEeCCCcEEEEEccccceee---eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceE
Q psy6859          63 TVASDKAMKVFDVINFDMIN---MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTV  139 (261)
Q Consensus        63 s~~~dg~v~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  139 (261)
                      +|..-+.|++|...++....   .+..+...+.-+.++|..+.+   ++||+.|+.|+|||++.+.....+....++.-|
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~v---faScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV  305 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGV---FASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV  305 (440)
T ss_pred             cCccccceEeeeeccCceeecCccccccccchhhhccCCccCce---EEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence            88888899999998876432   223355556667777766533   345699999999999998655555556677789


Q ss_pred             EEEEEeCCCCceEEEEecCCCeEEEEEccC--CCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccc
Q psy6859         140 ECIHYLGDAIPTAAVSDQDSSHVHIYDCKG--NGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEF  216 (261)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~  216 (261)
                      ..++|+.+..  ++++|++||+++|||+|.  .++++..|+ .|..+|++|.|+|... .|++++.|..|.+||+.-..-
T Consensus       306 NVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  306 NVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             eeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            9999998886  599999999999999982  357889998 9999999999999755 778888999999999864221


Q ss_pred             cCC---eee-eeecccccceeecCCCccceeeeeECCCC-ceEEEeecCC
Q psy6859         217 KFP---KCV-HFESKLDTDLFEFAKNKTYPSGLSFSPDG-NKFVTISMDR  261 (261)
Q Consensus       217 ~~~---~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~Dg  261 (261)
                      ...   ... .......+.++..++ ...+..+.|++.- .+|++.+.||
T Consensus       383 ~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  383 EEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             hhhhccccccchhcCCceeEEEecc-hhHhhhheeccCCCCeEEEecccc
Confidence            000   000 000011223333222 3467889999854 4677777765

>KOG0639|consensus

Probab=99.95  E-value=3.1e-27  Score=176.31  Aligned_cols=230  Identities=15%  Similarity=0.153  Sum_probs=196.1

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      +-|+++...| ++.|++|+.-.++.|||+..........+..-.-.+.+++.+||.+..+++..||.|.|||+.+...++
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr  545 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR  545 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee
Confidence            4577888888 899999999999999999876545555565545567889999999999999999999999999999999


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeE
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV  162 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  162 (261)
                      .++.+.....++.++.+|..+++.    +-|++|+-||+++++.+.....   ...|.++.++|++.+  ++.|.+++.+
T Consensus       546 qfqGhtDGascIdis~dGtklWTG----GlDntvRcWDlregrqlqqhdF---~SQIfSLg~cP~~dW--lavGMens~v  616 (705)
T KOG0639|consen  546 QFQGHTDGASCIDISKDGTKLWTG----GLDNTVRCWDLREGRQLQQHDF---SSQIFSLGYCPTGDW--LAVGMENSNV  616 (705)
T ss_pred             cccCCCCCceeEEecCCCceeecC----CCccceeehhhhhhhhhhhhhh---hhhheecccCCCccc--eeeecccCcE
Confidence            999999989999999999988887    9999999999999877665543   347889999999998  8899999999


Q ss_pred             EEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccce
Q psy6859         163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYP  242 (261)
Q Consensus       163 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (261)
                      -+-...  +.....+. .|+.-|.++.|.+-|+++++.+.|.-+..|...-               +..++..+ -...|
T Consensus       617 evlh~s--kp~kyqlh-lheScVLSlKFa~cGkwfvStGkDnlLnawrtPy---------------GasiFqsk-E~SsV  677 (705)
T KOG0639|consen  617 EVLHTS--KPEKYQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY---------------GASIFQSK-ESSSV  677 (705)
T ss_pred             EEEecC--Cccceeec-ccccEEEEEEecccCceeeecCchhhhhhccCcc---------------ccceeecc-ccCcc
Confidence            888875  34445554 7999999999999999999999999999998743               55666655 36789


Q ss_pred             eeeeECCCCceEEEeecCC
Q psy6859         243 SGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       243 ~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .++..|.|.++|++||.|+
T Consensus       678 lsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  678 LSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             eeeeeccCceEEEecCCCc
Confidence            9999999999999999874

>KOG0973|consensus

Probab=99.95  E-value=4.2e-26  Score=183.67  Aligned_cols=235  Identities=11%  Similarity=0.113  Sum_probs=186.4

Q ss_pred             CCCeEEEEEcC-CCeEEEec--CCCeEEEEeccCC----------ceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCc
Q psy6859           3 RSPITHVVVTK-TDFVITAS--NDGHIKFWKKQEE----------GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKA   69 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~--~d~~i~iw~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~   69 (261)
                      ...|.+|+.+| +..++||+  .|+.++||+.+.-          -.+.+.+...|.+.|+|+.|+|||++||+|+.|+.
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL   92 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence            45789999999 99999999  9999999987531          02345566779999999999999999999999999


Q ss_pred             EEEEEccc------------------cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe
Q psy6859          70 MKVFDVIN------------------FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK  131 (261)
Q Consensus        70 v~~wd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~  131 (261)
                      |.+|.-..                  .+.+..+..|...+..+.++|++..++++    +.|++|.+||.++.+.+..++
T Consensus        93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~----s~DnsViiwn~~tF~~~~vl~  168 (942)
T KOG0973|consen   93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV----SLDNSVIIWNAKTFELLKVLR  168 (942)
T ss_pred             EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe----cccceEEEEccccceeeeeee
Confidence            99999762                  12444556666677778888888877777    999999999999998888888


Q ss_pred             ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec-----cCcccCeEEEEEcCCCCEEEEEc----C
Q psy6859         132 LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-----RLHTKPVVLIKFNPIYQVVVSVD----K  202 (261)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~----~  202 (261)
                      .|  ...|-.+.|+|-+++  +++-++|++|++|++. +....+.+.     .........+.|+|||++|++..    .
T Consensus       169 ~H--~s~VKGvs~DP~Gky--~ASqsdDrtikvwrt~-dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~  243 (942)
T KOG0973|consen  169 GH--QSLVKGVSWDPIGKY--FASQSDDRTLKVWRTS-DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG  243 (942)
T ss_pred             cc--cccccceEECCccCe--eeeecCCceEEEEEcc-cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence            75  457889999999998  9999999999999987 555555554     12345678899999999998864    2


Q ss_pred             CCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCC-----Cc------------eEEEeecCC
Q psy6859         203 AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPD-----GN------------KFVTISMDR  261 (261)
Q Consensus       203 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~s~~~Dg  261 (261)
                      -.++.|.+.               .+.+.-..+-+|..++..++|+|.     .+            .+|+||.|+
T Consensus       244 ~~~~~IieR---------------~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr  304 (942)
T KOG0973|consen  244 KSTIAIIER---------------GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR  304 (942)
T ss_pred             cceeEEEec---------------CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence            335667665               335556778899999999999982     12            678888886

>KOG2048|consensus

Probab=99.95  E-value=5.5e-25  Score=169.25  Aligned_cols=234  Identities=13%  Similarity=0.166  Sum_probs=195.5

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccc-cceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL-GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      ..+|+++||+. .+.||.+-.||.|.+|++... .-+...+.++. ..|.+++|++. ..|++.+.+|.|.-||+.+++.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCce
Confidence            36899999999 888999999999999999873 34555566554 57999999954 4788999999999999999999


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ...+......+..+++++.+..++..    +.||.+..++...++......+.....++.+++|+|++..  +++|+.||
T Consensus       103 ~~~~d~~gg~IWsiai~p~~~~l~Ig----cddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~--i~~Gs~Dg  176 (691)
T KOG2048|consen  103 KYNIDSNGGAIWSIAINPENTILAIG----CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK--IAGGSIDG  176 (691)
T ss_pred             eEEecCCCcceeEEEeCCccceEEee----cCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE--EEecccCc
Confidence            99999888889999999988766555    7999888888888877776666666679999999999976  89999999


Q ss_pred             eEEEEEccCCCccceeec-------cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859         161 HVHIYDCKGNGTPLHVLD-------RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF  233 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  233 (261)
                      .|++||.. .+..+....       .....-|+++.|-.++ .|++|..-|.|.+||.               ..+..++
T Consensus       177 ~Iriwd~~-~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~---------------~~gTLiq  239 (691)
T KOG2048|consen  177 VIRIWDVK-SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDS---------------IFGTLIQ  239 (691)
T ss_pred             eEEEEEcC-CCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcc---------------cCcchhh
Confidence            99999998 776655221       1133457888887665 6899999999999998               4478888


Q ss_pred             ecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         234 EFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       234 ~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+..|...|.+++..+++.+++++|.|+
T Consensus       240 S~~~h~adVl~Lav~~~~d~vfsaGvd~  267 (691)
T KOG2048|consen  240 SHSCHDADVLALAVADNEDRVFSAGVDP  267 (691)
T ss_pred             hhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence            8999999999999999999999999885

>KOG1273|consensus

Probab=99.95  E-value=2.8e-26  Score=161.85  Aligned_cols=238  Identities=12%  Similarity=0.107  Sum_probs=168.8

Q ss_pred             eEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859           6 ITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         6 v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      -.|+.|++ |.+||+|..||.|.|||+.+.  ...+.+.+|..+|.+++|++||+.|++++.|..+.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            57899999 999999999999999999987  677889999999999999999999999999999999999999999988


Q ss_pred             eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC--ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeE
Q psy6859          85 KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN--DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV  162 (261)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  162 (261)
                      .... |+..+.++|.......+.   -.+..-.+-++...  ..+..-..........+..|.+.+.+  +++|...|.+
T Consensus       104 rf~s-pv~~~q~hp~k~n~~va~---~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y--IitGtsKGkl  177 (405)
T KOG1273|consen  104 RFDS-PVWGAQWHPRKRNKCVAT---IMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY--IITGTSKGKL  177 (405)
T ss_pred             EccC-ccceeeeccccCCeEEEE---EecCCcEEEEecCCceeeccCCCccccccccccccccCCCCE--EEEecCcceE
Confidence            8664 455566666443332221   12222233333321  11111000001112233457888887  8999999999


Q ss_pred             EEEEccCCCccceeeccCcc-cCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC--Cc
Q psy6859         163 HIYDCKGNGTPLHVLDRLHT-KPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK--NK  239 (261)
Q Consensus       163 ~i~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  239 (261)
                      .+||.. +.+++..++ ... ..|.++.++..|++|+.-+.|..|+.|+++.-.... +.     ...++.+.++.  .+
T Consensus       178 lv~~a~-t~e~vas~r-its~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~-r~-----~e~e~~~K~qDvVNk  249 (405)
T KOG1273|consen  178 LVYDAE-TLECVASFR-ITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG-RD-----GEVEPEHKLQDVVNK  249 (405)
T ss_pred             EEEecc-hheeeeeee-echheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC-cc-----CCcChhHHHHHHHhh
Confidence            999999 888888887 444 789999999999999999999999999985310000 00     00111122221  22


Q ss_pred             cceeeeeECCCCceEEEeec
Q psy6859         240 TYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ..=.+++||.+|.|++.++.
T Consensus       250 ~~Wk~ccfs~dgeYv~a~s~  269 (405)
T KOG1273|consen  250 LQWKKCCFSGDGEYVCAGSA  269 (405)
T ss_pred             hhhhheeecCCccEEEeccc
Confidence            23357899999999988763

>KOG0308|consensus

Probab=99.95  E-value=8.5e-27  Score=178.50  Aligned_cols=202  Identities=15%  Similarity=0.213  Sum_probs=169.3

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEE-eeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICT-NYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      |.+.|+.++... ++.|+++|.|-+|++|+....+.-+..+++.|.+.|.|+++ .++...+|+|+.|+.|.+||++++.
T Consensus        72 HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~  151 (735)
T KOG0308|consen   72 HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT  151 (735)
T ss_pred             hHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcc
Confidence            777888888887 78999999999999999987654677889999999999999 7788899999999999999999773


Q ss_pred             --eeeeee---------ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCC
Q psy6859          80 --MINMIK---------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDA  148 (261)
Q Consensus        80 --~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (261)
                        .+..+.         .+..++...+..+.+    +..++|+..+.+++||.++.+.+..+.+  |...|..+-.++++
T Consensus       152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~----t~ivsGgtek~lr~wDprt~~kimkLrG--HTdNVr~ll~~dDG  225 (735)
T KOG0308|consen  152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG----TIIVSGGTEKDLRLWDPRTCKKIMKLRG--HTDNVRVLLVNDDG  225 (735)
T ss_pred             hhhhhhccccccccCCCCCccceeeeecCCcc----eEEEecCcccceEEeccccccceeeeec--cccceEEEEEcCCC
Confidence              333222         122233333433333    3445679999999999999988888875  55688999999999


Q ss_pred             CceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         149 IPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       149 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ..  +++++.||+|++||+. ..+++.++. .|...|+++..+|+-..+++|+.||.|..=|+++
T Consensus       226 t~--~ls~sSDgtIrlWdLg-qQrCl~T~~-vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  226 TR--LLSASSDGTIRLWDLG-QQRCLATYI-VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             Ce--EeecCCCceEEeeecc-ccceeeeEE-eccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            87  8999999999999999 889999998 9999999999999999999999999999999876

>KOG0307|consensus

Probab=99.95  E-value=3.8e-27  Score=190.57  Aligned_cols=239  Identities=15%  Similarity=0.223  Sum_probs=186.5

Q ss_pred             CCeEEEEEcC-CC----eEEEecCCCeEEEEeccC----CceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEE
Q psy6859           4 SPITHVVVTK-TD----FVITASNDGHIKFWKKQE----EGIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVF   73 (261)
Q Consensus         4 ~~v~~~~~~~-~~----~l~s~~~d~~i~iw~~~~----~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~w   73 (261)
                      ..-+.++|.+ +.    +||.|..||.|.+|+...    .....+.++..|++.|..+.|++. ++.|++|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            3567899988 54    499999999999999865    223456677889999999999995 4599999999999999


Q ss_pred             Eccccceeeeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCce
Q psy6859          74 DVINFDMINMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPT  151 (261)
Q Consensus        74 d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (261)
                      |+.+-+.-..+..  ....+.++.+..   .+-.++++++.+|.+.|||++..+++-.+........+..+.|+|+....
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNr---kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq  221 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNR---KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ  221 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccch---hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence            9987543333321  112233334432   33344455689999999999999888777766555668899999998776


Q ss_pred             EEEEecCCC--eEEEEEccCCCccceeeccCcccCeEEEEEcCCC-CEEEEEcCCCeEEEeecccccccCCeeeeeeccc
Q psy6859         152 AAVSDQDSS--HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY-QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKL  228 (261)
Q Consensus       152 ~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  228 (261)
                      ++++..+|+  .|.+||+|....++++++ .|+..|.++.|++.+ ++|++++.|+.|.+|+.               ++
T Consensus       222 l~~As~dd~~PviqlWDlR~assP~k~~~-~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~---------------~t  285 (1049)
T KOG0307|consen  222 LLVASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNP---------------NT  285 (1049)
T ss_pred             eeeecCCCCCceeEeecccccCCchhhhc-ccccceeeeccCCCCchhhhcccCCCCeeEecC---------------CC
Confidence            555544443  499999997788999998 999999999999977 78899999999999999               45


Q ss_pred             ccceeecCCCccceeeeeECCCCc-eEEEeecCC
Q psy6859         229 DTDLFEFAKNKTYPSGLSFSPDGN-KFVTISMDR  261 (261)
Q Consensus       229 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~Dg  261 (261)
                      ++.+..+....+++..+.|.|... .+++++-||
T Consensus       286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdg  319 (1049)
T KOG0307|consen  286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDG  319 (1049)
T ss_pred             ceEeeecCCCCcceeeeeecCCCcchhhhheecc
Confidence            788888888889999999999665 677766665

>KOG4328|consensus

Probab=99.95  E-value=1.1e-25  Score=165.86  Aligned_cols=237  Identities=13%  Similarity=0.139  Sum_probs=169.4

Q ss_pred             CCCCeEEEEEcC--C-CeEEEecCCCeEEEEeccCC--ceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEc
Q psy6859           2 HRSPITHVVVTK--T-DFVITASNDGHIKFWKKQEE--GIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         2 H~~~v~~~~~~~--~-~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~   75 (261)
                      |.++|++++|+|  . +++|+|..-|+|-+||+.++  ...-+..+..|..+|.++.|+| +...+++.+.||+|++-|+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~  264 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF  264 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence            578999999999  4 68999999999999999532  2244566778999999999999 5568999999999999999


Q ss_pred             cccceeeeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce-eeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          76 INFDMINMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM-INMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        76 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      +.+..-..+..  .......+.++.....++.+    ..=|.+.+||+++... ...+..+  ...|..++++|...+ +
T Consensus       265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~----~~~G~f~~iD~R~~~s~~~~~~lh--~kKI~sv~~NP~~p~-~  337 (498)
T KOG4328|consen  265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFG----DNVGNFNVIDLRTDGSEYENLRLH--KKKITSVALNPVCPW-F  337 (498)
T ss_pred             cchhhHHHhhcCccceeeeeccccCCCccEEEe----ecccceEEEEeecCCccchhhhhh--hcccceeecCCCCch-h
Confidence            87654433333  22233344444445544444    5556899999997754 4444443  338999999999886 4


Q ss_pred             EEEecCCCeEEEEEccCCC-c---cceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccc
Q psy6859         153 AVSDQDSSHVHIYDCKGNG-T---PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKL  228 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  228 (261)
                      +++++.|++.+|||++.-. +   .+..+  .|...|.+..|||.+-.|++.+.|..|+|||..--.           ..
T Consensus       338 laT~s~D~T~kIWD~R~l~~K~sp~lst~--~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~s-----------a~  404 (498)
T KOG4328|consen  338 LATASLDQTAKIWDLRQLRGKASPFLSTL--PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCIS-----------AK  404 (498)
T ss_pred             eeecccCcceeeeehhhhcCCCCcceecc--cccceeeeeEEcCCCCceEeeccCCceEEeeccccc-----------cc
Confidence            8899999999999998322 1   24444  799999999999998889999999999999973000           00


Q ss_pred             ccceeecC---CCcc--ceeeeeECCCCceEEEee
Q psy6859         229 DTDLFEFA---KNKT--YPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       229 ~~~~~~~~---~~~~--~v~~~~~s~~~~~l~s~~  258 (261)
                      ..+...+.   .+..  ......|.|+..++++|-
T Consensus       405 ~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~  439 (498)
T KOG4328|consen  405 DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR  439 (498)
T ss_pred             CCccceeeccCcccccccchhheeCCCccEEEEec
Confidence            11111111   1111  234567999888888774

>KOG4378|consensus

Probab=99.94  E-value=3.4e-26  Score=170.53  Aligned_cols=214  Identities=12%  Similarity=0.173  Sum_probs=182.7

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeecc-Cccee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLD-FTPLT   92 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~   92 (261)
                      ..++++|+..+.|+|||+...  .+.+.+++|++.|+++.++....||++++..|.|.|..+.++.....+..+ .+.+.
T Consensus        91 S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR  168 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR  168 (673)
T ss_pred             ceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence            468999999999999999965  778889999999999999998899999999999999999999888888766 34455


Q ss_pred             EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc
Q psy6859          93 VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT  172 (261)
Q Consensus        93 ~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  172 (261)
                      .+.+++..+.++..   ++.+|.|.+||+....++..+... |..+...++|+|.... ++++-+.|..|.+||.+ ..+
T Consensus       169 ll~ys~skr~lL~~---asd~G~VtlwDv~g~sp~~~~~~~-HsAP~~gicfspsne~-l~vsVG~Dkki~~yD~~-s~~  242 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSI---ASDKGAVTLWDVQGMSPIFHASEA-HSAPCRGICFSPSNEA-LLVSVGYDKKINIYDIR-SQA  242 (673)
T ss_pred             EeecccccceeeEe---eccCCeEEEEeccCCCcccchhhh-ccCCcCcceecCCccc-eEEEecccceEEEeecc-ccc
Confidence            67777766655543   489999999999988777665432 4557788999998875 57888899999999999 777


Q ss_pred             cceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCC
Q psy6859         173 PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDG  251 (261)
Q Consensus       173 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  251 (261)
                      ....+  ....+...++|.++|.+|+.|...|.|..||++.              +..++..+..|...|++++|-|..
T Consensus       243 s~~~l--~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~--------------~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  243 STDRL--TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS--------------TKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccee--eecCCcceeeecCCceEEEeecCCceEEEEeccc--------------CCCCceEeeecccceeEEEeeecc
Confidence            88888  5788999999999999999999999999999984              467889999999999999998864

>KOG0640|consensus

Probab=99.94  E-value=4.7e-26  Score=160.59  Aligned_cols=201  Identities=15%  Similarity=0.223  Sum_probs=157.5

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCcee-eeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIE-FVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      |.++|+++.|+| ..+|++|+.|++|+++|......+ ..+.++ ...+|.++.|+|.|.+|+.|....++++||+++-+
T Consensus       171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q  249 (430)
T KOG0640|consen  171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ  249 (430)
T ss_pred             ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence            889999999999 999999999999999999864222 222233 45689999999999999999999999999999988


Q ss_pred             eeeeee---ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859          80 MINMIK---LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus        80 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                      +...-.   .+...+..+..++.++..++.    +.||.|++||--+++++.++........|++..|..++++  +++.
T Consensus       250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTa----SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky--iLsS  323 (430)
T KOG0640|consen  250 CFVSANPDDQHTGAITQVRYSSTGSLYVTA----SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY--ILSS  323 (430)
T ss_pred             EeeecCcccccccceeEEEecCCccEEEEe----ccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE--Eeec
Confidence            665433   223345555566666655555    9999999999999999998876656678999999999987  8888


Q ss_pred             cCCCeEEEEEccCCCccceeec------------------------------------------------cCcccCeEEE
Q psy6859         157 QDSSHVHIYDCKGNGTPLHVLD------------------------------------------------RLHTKPVVLI  188 (261)
Q Consensus       157 ~~d~~i~i~d~~~~~~~~~~~~------------------------------------------------~~~~~~v~~~  188 (261)
                      +.|..+++|.+. +++++.++.                                                .+|++.+..+
T Consensus       324 G~DS~vkLWEi~-t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i  402 (430)
T KOG0640|consen  324 GKDSTVKLWEIS-TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI  402 (430)
T ss_pred             CCcceeeeeeec-CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence            899999999998 776665543                                                1455666666


Q ss_pred             EEcCCCCEEEEEcCCCeEEEee
Q psy6859         189 KFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       189 ~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      .-+|.+.-+++++.|-..++|-
T Consensus       403 ~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  403 VHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             EeCCCCCceeeecccceeeeee
Confidence            6777777777777777777775

>KOG1274|consensus

Probab=99.94  E-value=1.3e-24  Score=172.55  Aligned_cols=234  Identities=15%  Similarity=0.196  Sum_probs=185.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|+..-+.|+|.| |+.|++++.||.|++|+......++ .++..+...|.+++-.  +.+|++++.+++|.+|.+.+++
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-chhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            5889999999999 9999999999999999876542122 2222266777777654  4599999999999999998876


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .-..+..-..|...+++..+|..++++    +.|-.|++.++........++.  +...+.++.|+|++..  +++.+.|
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaag----sdD~~vK~~~~~D~s~~~~lrg--h~apVl~l~~~p~~~f--LAvss~d  159 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAG----SDDTAVKLLNLDDSSQEKVLRG--HDAPVLQLSYDPKGNF--LAVSSCD  159 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEee----cCceeEEEEeccccchheeecc--cCCceeeeeEcCCCCE--EEEEecC
Confidence            544443334567889999999988887    9999999999998877777776  4557899999999985  7777789


Q ss_pred             CeEEEEEccCCCccceeecc-------CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce
Q psy6859         160 SHVHIYDCKGNGTPLHVLDR-------LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL  232 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  232 (261)
                      |.|++||+. ++.+..++..       .....+..++|+|++..++....|+.|++|+..+               ....
T Consensus       160 G~v~iw~~~-~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~---------------we~~  223 (933)
T KOG1274|consen  160 GKVQIWDLQ-DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG---------------WELQ  223 (933)
T ss_pred             ceEEEEEcc-cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC---------------ceeh
Confidence            999999999 8777666540       1134567789999988888888899999999843               5555


Q ss_pred             eecCC--CccceeeeeECCCCceEEEeecCC
Q psy6859         233 FEFAK--NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       233 ~~~~~--~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +.+..  +...+..+.|+|+|+|||+++.||
T Consensus       224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             eeecccccccceEEEEEcCCCcEEeeeccCC
Confidence            55554  455589999999999999999886

>KOG1408|consensus

Probab=99.94  E-value=1.5e-25  Score=173.91  Aligned_cols=235  Identities=13%  Similarity=0.192  Sum_probs=190.7

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee---CCCEEEEEeCCCcEEEEEcccc
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY---NGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ...+.+++.+| +++||+|..-|+++||++.+.  +....+..|...|.|+.|+.   ..++|+++++|+.|.+||+...
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            34689999999 999999999999999999876  77778899999999999984   4578999999999999998643


Q ss_pred             -ceeeeeeccCcceeEEEEeecC--CceeeeeeecCCCCeEEEEEcCCCceeeEEe---ecCCcceEEEEEEeCCCCceE
Q psy6859          79 -DMINMIKLDFTPLTVECIHYLG--DAIPTAAVSDQDSSRVHIYDCKGNDMINMIK---LDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  152 (261)
                       .++.++..+...++.+.+...+  ...++    ++.|+.|.+--.+....-..+.   .......+..++..|...+  
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~Mis----cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~--  610 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMIS----CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL--  610 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEe----ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce--
Confidence             5666777777777777776665  33333    3778776554333111111111   1112347889999999876  


Q ss_pred             EEEecCCCeEEEEEccCCCccceeec--cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLD--RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDT  230 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  230 (261)
                      +++++.|..|+|||+. .++.++.|+  ..|++....+...|.|-|||+...|.++.++|.               .+++
T Consensus       611 v~t~cQDrnirif~i~-sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df---------------~sgE  674 (1080)
T KOG1408|consen  611 VVTVCQDRNIRIFDIE-SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF---------------VSGE  674 (1080)
T ss_pred             EEEEecccceEEEecc-ccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe---------------ccch
Confidence            8888999999999999 999999998  356778888999999999999999999999998               5589


Q ss_pred             ceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         231 DLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       231 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++.+..+|...|+.+.|++|.+.|++.+.||
T Consensus       675 cvA~m~GHsE~VTG~kF~nDCkHlISvsgDg  705 (1080)
T KOG1408|consen  675 CVAQMTGHSEAVTGVKFLNDCKHLISVSGDG  705 (1080)
T ss_pred             hhhhhcCcchheeeeeecccchhheeecCCc
Confidence            9999999999999999999999999999986

>KOG2106|consensus

Probab=99.94  E-value=6.5e-24  Score=158.60  Aligned_cols=224  Identities=15%  Similarity=0.223  Sum_probs=167.2

Q ss_pred             CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859           4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM   83 (261)
Q Consensus         4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~   83 (261)
                      +-|.|++|.++.-+++|..+|.|.||+..+.  +..+....|.+.|.+++...+|+ |++|+.|+.|..|| ..-+.++.
T Consensus       247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~--~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~  322 (626)
T KOG2106|consen  247 KFVLCVTFLENGDVITGDSGGNILIWSKGTN--RISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRE  322 (626)
T ss_pred             eEEEEEEEcCCCCEEeecCCceEEEEeCCCc--eEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-cccccccc
Confidence            5689999999666899999999999998765  66666669999999999999995 55699999999999 33222222


Q ss_pred             eeccC-----------------------------------------cceeEEEEeecCCceeeeeeecCCCCeEEEEEcC
Q psy6859          84 IKLDF-----------------------------------------TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK  122 (261)
Q Consensus        84 ~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~  122 (261)
                      .+++.                                         ....-...+++.++++++    +.|+.+++|+  
T Consensus       323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~----gqdk~v~lW~--  396 (626)
T KOG2106|consen  323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTC----GQDKHVRLWN--  396 (626)
T ss_pred             ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeec----cCcceEEEcc--
Confidence            22111                                         111222233334444444    8999999999  


Q ss_pred             CCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcC
Q psy6859         123 GNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK  202 (261)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  202 (261)
                      ..+++-....   ..++.|+.|+|.+.   ++.|...|...+.|.. +...+..-. . +.+++.++|+|+|.+||.|+.
T Consensus       397 ~~k~~wt~~~---~d~~~~~~fhpsg~---va~Gt~~G~w~V~d~e-~~~lv~~~~-d-~~~ls~v~ysp~G~~lAvgs~  467 (626)
T KOG2106|consen  397 DHKLEWTKII---EDPAECADFHPSGV---VAVGTATGRWFVLDTE-TQDLVTIHT-D-NEQLSVVRYSPDGAFLAVGSH  467 (626)
T ss_pred             CCceeEEEEe---cCceeEeeccCcce---EEEeeccceEEEEecc-cceeEEEEe-c-CCceEEEEEcCCCCEEEEecC
Confidence            4444444443   23678999999993   8889999999999998 655555543 4 899999999999999999999


Q ss_pred             CCeEEEeecccccccCCeeeeeecccccceeecC-CCccceeeeeECCCCceEEEeecC
Q psy6859         203 AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA-KNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       203 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      |+.|.||.+..+              +....... -+..+|+.+.||+|+++|.+-+-|
T Consensus       468 d~~iyiy~Vs~~--------------g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  468 DNHIYIYRVSAN--------------GRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             CCeEEEEEECCC--------------CcEEEEeeeecCceeEEeeecCCCceEEeccCc
Confidence            999999998753              33332222 244899999999999999987655

>KOG0650|consensus

Probab=99.94  E-value=1.8e-25  Score=169.91  Aligned_cols=236  Identities=14%  Similarity=0.130  Sum_probs=183.0

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCE-EEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL-LCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~v~~wd~~~~   78 (261)
                      ||++.|.+|...| |.+|++|+.||+|+||.+.++  .+++++. ..+.|.+++|+|.+.. +++++....+.|.+..-|
T Consensus       398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G  474 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG  474 (733)
T ss_pred             ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence            8999999999999 999999999999999999998  8888876 5578999999996543 233333334555543322


Q ss_pred             cee-------------------------------------eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEc
Q psy6859          79 DMI-------------------------------------NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC  121 (261)
Q Consensus        79 ~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~  121 (261)
                      ..+                                     +..-.+..++..+.++..|++++++..+ +....|.|+++
T Consensus       475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~-~~~~~VliHQL  553 (733)
T KOG0650|consen  475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD-SGNKSVLIHQL  553 (733)
T ss_pred             chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC-CCcceEEEEec
Confidence            100                                     0011123345556677778888887544 56788999999


Q ss_pred             CCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc
Q psy6859         122 KGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD  201 (261)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  201 (261)
                      ........+..  ..+.+.++.|+|...++++++   ...|++||+. ...+++.+. .....|.+++.+|.|..|+.++
T Consensus       554 SK~~sQ~PF~k--skG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~-kqelvKkL~-tg~kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  554 SKRKSQSPFRK--SKGLVQRVKFHPSKPYLFVAT---QRSVRIYDLS-KQELVKKLL-TGSKWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             ccccccCchhh--cCCceeEEEecCCCceEEEEe---ccceEEEehh-HHHHHHHHh-cCCeeeeeeeecCCCCeEEEec
Confidence            87765544432  345789999999998744443   5789999998 778888886 6778899999999999999999


Q ss_pred             CCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         202 KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       202 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .|+.+..+|+.              ...++.++++-|...+++++|++.-.++++|+.||
T Consensus       627 ~d~k~~WfDld--------------lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg  672 (733)
T KOG0650|consen  627 YDKKMCWFDLD--------------LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG  672 (733)
T ss_pred             CCCeeEEEEcc--------------cCcchhHHhhhhhhhhhhhhhccccceeeeecCCC
Confidence            99999999996              34678888999999999999999999999999986

>KOG0270|consensus

Probab=99.94  E-value=7.7e-25  Score=160.81  Aligned_cols=192  Identities=16%  Similarity=0.203  Sum_probs=154.1

Q ss_pred             CCeEEEecCCCeEEEEeccCCc-eeeeEE------------------eeccccceeEEEEeeC-CCEEEEEeCCCcEEEE
Q psy6859          14 TDFVITASNDGHIKFWKKQEEG-IEFVKH------------------FRSHLGVIHSICTNYN-GTLLCTVASDKAMKVF   73 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~-~~~~~~------------------~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~w   73 (261)
                      |+++|.|..|..|.|||++-.. ..+..+                  -.+|++.|..+.|+.. ...|++||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            5799999999999999986421 011111                  2368999999999864 4589999999999999


Q ss_pred             EccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          74 DVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        74 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      |+.++++..++..+..++..+.+++....   .+++|+.|++|.+.|.+.. +.-..++.   ...+..+.|+|..... 
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~---~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~g~VEkv~w~~~se~~-  344 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPS---VLLSGSYDGTVALKDCRDPSNSGKEWKF---DGEVEKVAWDPHSENS-  344 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCce---EEEeccccceEEeeeccCccccCceEEe---ccceEEEEecCCCcee-
Confidence            99999999999988888888888875543   3345799999999999942 22233333   2367888998887754 


Q ss_pred             EEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeeccc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  213 (261)
                      ++++..||+++-+|+|..++++.+++ .|..+|.+|++++.-. +|++++.|+.+++|++..
T Consensus       345 f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  345 FFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             EEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence            67778999999999997789999998 9999999999998765 679999999999999864

>KOG0268|consensus

Probab=99.94  E-value=2.2e-26  Score=165.03  Aligned_cols=199  Identities=17%  Similarity=0.230  Sum_probs=160.8

Q ss_pred             eeeEEeeccccceeEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCe
Q psy6859          37 EFVKHFRSHLGVIHSICTNYNG-TLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSR  115 (261)
Q Consensus        37 ~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~  115 (261)
                      ..+..+.+|.+.|.+++=+|.. ..+++|+.||.|++||+.+..+...++.+...+..+++..  ..++++    +.|++
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tv----gdDKt  130 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTV----GDDKT  130 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEe----cCCcc
Confidence            3556778999999999999975 6799999999999999999999999988877766666654  333333    56666


Q ss_pred             EEEEE--------------------------------------cCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859         116 VHIYD--------------------------------------CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus       116 i~i~d--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      |+.|.                                      .+...++..+...  -..+.++.|+|.... +++++.
T Consensus       131 vK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG--~Dti~svkfNpvETs-ILas~~  207 (433)
T KOG0268|consen  131 VKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWG--ADSISSVKFNPVETS-ILASCA  207 (433)
T ss_pred             eeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecC--CCceeEEecCCCcch-heeeec
Confidence            66665                                      3333344444432  236889999998875 477777


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      .|+.|.+||++ .+.+++.+.  ....-+.|+|+|.+-.++++++|..++.||++              ...+++....+
T Consensus       208 sDrsIvLyD~R-~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR--------------~l~~p~~v~~d  270 (433)
T KOG0268|consen  208 SDRSIVLYDLR-QASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMR--------------NLSRPLNVHKD  270 (433)
T ss_pred             cCCceEEEecc-cCCccceee--eeccccceecCccccceeeccccccceehhhh--------------hhcccchhhcc
Confidence            89999999999 999998884  66677899999977788999999999999997              45788889999


Q ss_pred             CccceeeeeECCCCceEEEeecCC
Q psy6859         238 NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |.+.|.++.|||.|+-+++||.|+
T Consensus       271 hvsAV~dVdfsptG~EfvsgsyDk  294 (433)
T KOG0268|consen  271 HVSAVMDVDFSPTGQEFVSGSYDK  294 (433)
T ss_pred             cceeEEEeccCCCcchhccccccc
Confidence            999999999999999999999985

>KOG1332|consensus

Probab=99.94  E-value=4.1e-25  Score=150.72  Aligned_cols=210  Identities=14%  Similarity=0.138  Sum_probs=157.5

Q ss_pred             CCCCCeEEEEEc-C--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC--CCEEEEEeCCCcEEEEEc
Q psy6859           1 MHRSPITHVVVT-K--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN--GTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~-~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~v~~wd~   75 (261)
                      ||.+||+.++|. |  |++||+++.||.|.||.-+++..........|...|++++|.|.  |-.|++++.||.|.+.+.
T Consensus        54 Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~  133 (299)
T KOG1332|consen   54 GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTY  133 (299)
T ss_pred             CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEE
Confidence            899999999996 5  89999999999999999988766677778889999999999984  567899999999999998


Q ss_pred             ccc-c--eeeeeeccCcceeEEEEeec---CCc----e---eeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEE
Q psy6859          76 INF-D--MINMIKLDFTPLTVECIHYL---GDA----I---PTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECI  142 (261)
Q Consensus        76 ~~~-~--~~~~~~~~~~~~~~~~~~~~---~~~----~---~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  142 (261)
                      ++. .  ..+....+......+++.|.   +..    .   .--+++|+.|+.|+||+..+.+-+..-.+..+...++.+
T Consensus       134 ~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDV  213 (299)
T KOG1332|consen  134 DSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDV  213 (299)
T ss_pred             cCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhh
Confidence            754 2  11222233333444555443   200    0   111456699999999999887544333345567789999


Q ss_pred             EEeCCC--CceEEEEecCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         143 HYLGDA--IPTAAVSDQDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       143 ~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      ++.|..  ....+++++.||++.||..+....+  ...++ .....+..+.|++.|..|+.++.|+.+.+|.-
T Consensus       214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            998864  3345899999999999988733222  12222 34578999999999999999999999999974

>KOG1007|consensus

Probab=99.94  E-value=1.4e-24  Score=151.59  Aligned_cols=251  Identities=17%  Similarity=0.215  Sum_probs=179.9

Q ss_pred             CCCCeEEEEEcC-C-CeEEEecCC-------CeEEEEeccCCc-------eeeeEEee-ccccceeEEEEeeCCCEEEEE
Q psy6859           2 HRSPITHVVVTK-T-DFVITASND-------GHIKFWKKQEEG-------IEFVKHFR-SHLGVIHSICTNYNGTLLCTV   64 (261)
Q Consensus         2 H~~~v~~~~~~~-~-~~l~s~~~d-------~~i~iw~~~~~~-------~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~   64 (261)
                      |.+.|+.++-+| + .+|+++..+       -.+.||.+.+.-       .+.+..+. .+-+.|.|+.|.|++..+++-
T Consensus        62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm  141 (370)
T KOG1007|consen   62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM  141 (370)
T ss_pred             CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence            568899999999 4 466665442       246799987521       22333343 355689999999999999886


Q ss_pred             eCCCcEEEEEccccce-eeeeecc-----CcceeEEEEee--cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCc
Q psy6859          65 ASDKAMKVFDVINFDM-INMIKLD-----FTPLTVECIHY--LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTP  136 (261)
Q Consensus        65 ~~dg~v~~wd~~~~~~-~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~  136 (261)
                      . |..|.+|++.++.. +..+...     ........++|  +++.+++     ..|+++..||+++.+....++. .+.
T Consensus       142 ~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-----t~d~tl~~~D~RT~~~~~sI~d-AHg  214 (370)
T KOG1007|consen  142 D-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-----TSDSTLQFWDLRTMKKNNSIED-AHG  214 (370)
T ss_pred             c-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-----eCCCcEEEEEccchhhhcchhh-hhc
Confidence            5 78999999987765 3333321     22233344555  4455544     4899999999998876666653 255


Q ss_pred             ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC-CEEEEEcCCCeEEEeeccccc
Q psy6859         137 LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY-QVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~  215 (261)
                      ..++.+.|+|+..+ +++++++||.|+|||.|.+..+++++. +|...|+++.|+|.- ++|++++.|..|.+|....-.
T Consensus       215 q~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  215 QRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             ceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence            68999999999885 588999999999999998889999998 999999999999965 577999999999999865321


Q ss_pred             ----ccCCe-e---------eeeecccccceeecCCCccceeeeeECCCC-ceEEEeecCC
Q psy6859         216 ----FKFPK-C---------VHFESKLDTDLFEFAKNKTYPSGLSFSPDG-NKFVTISMDR  261 (261)
Q Consensus       216 ----~~~~~-~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~Dg  261 (261)
                          .++.. .         .+.+......+.++..|+..|++++||.-. -.+|+-|+||
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG  353 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG  353 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence                11100 0         001112233456778899999999999744 4567778886

>KOG0321|consensus

Probab=99.93  E-value=2.5e-24  Score=164.83  Aligned_cols=240  Identities=14%  Similarity=0.145  Sum_probs=165.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      .|.+.|..+.|-| ...|++++.|.++++||+++....-...+.+|+..|.+++|.| +...|++|+.||.+.|||++..
T Consensus        98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen   98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence            3899999999999 6789999999999999999874333344889999999999998 4557899999999999998642


Q ss_pred             c--eeee-------------------------eeccCcceeE---EEEeecCCceeeeeeecCCCCeEEEEEcCCCcee-
Q psy6859          79 D--MINM-------------------------IKLDFTPLTV---ECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI-  127 (261)
Q Consensus        79 ~--~~~~-------------------------~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~-  127 (261)
                      .  ....                         .+.+...+..   ..+..+...++++   |..|+.|++||++..... 
T Consensus       178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSa---ga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASA---GAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeec---cCCCcceEEEeeccccccc
Confidence            2  0000                         0001111111   2223344555544   335999999999975432 


Q ss_pred             -----eEEeecCC---cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC-ccceeeccCcccC--eEEEEEcCCCCE
Q psy6859         128 -----NMIKLDFT---PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG-TPLHVLDRLHTKP--VVLIKFNPIYQV  196 (261)
Q Consensus       128 -----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~--v~~~~~~~~~~~  196 (261)
                           .....+.+   ...+.++..+..|.+ +++++. |+.|++|++.... .++..+. ++...  -..-..+|++.+
T Consensus       255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~-L~AsCt-D~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks~lSpd~~~  331 (720)
T KOG0321|consen  255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTY-LFASCT-DNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKSELSPDDCS  331 (720)
T ss_pred             ccCCCcccCccCcccceeeeEEEEecCCCCe-EEEEec-CCcEEEEeccccCcCchhhcc-CcccceeeeeeecCCCCce
Confidence                 22222222   234566666676776 355555 9999999998222 3455553 32211  112257899999


Q ss_pred             EEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCC-ceEEEeecC
Q psy6859         197 VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDG-NKFVTISMD  260 (261)
Q Consensus       197 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~D  260 (261)
                      |++|+.|....+|.+..              .......+.+|...|++++|.|.. .-++++++|
T Consensus       332 l~SgSsd~~ayiw~vs~--------------~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD  382 (720)
T KOG0321|consen  332 LLSGSSDEQAYIWVVSS--------------PEAPPALLLGHTREVTTVRWLPSATTPVATCSDD  382 (720)
T ss_pred             EeccCCCcceeeeeecC--------------ccCChhhhhCcceEEEEEeeccccCCCceeeccC
Confidence            99999999999999863              245667788999999999998843 346677777

>KOG1539|consensus

Probab=99.93  E-value=3.8e-23  Score=162.75  Aligned_cols=247  Identities=16%  Similarity=0.257  Sum_probs=196.7

Q ss_pred             eEEEEEcC---CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           6 ITHVVVTK---TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         6 v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      |+++. +|   -+.++.|+.+|.+.+|++.++  +.+.+++++.+.|+++.-+|-=..++.|..+|+|.+++++.++.+.
T Consensus       162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~--K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~  238 (910)
T KOG1539|consen  162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTG--KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM  238 (910)
T ss_pred             eeeEe-cchhheeeEEEeecCCcEEEEEeccC--cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence            66663 56   256889999999999999998  8999999999999999999977799999999999999999999999


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe-------------------------------
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK-------------------------------  131 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-------------------------------  131 (261)
                      +++....++..+.+.-+|..+++.   ++..|.+.+||++..+.+..+.                               
T Consensus       239 sFk~d~g~VtslSFrtDG~p~las---~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~  315 (910)
T KOG1539|consen  239 SFKQDWGRVTSLSFRTDGNPLLAS---GRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW  315 (910)
T ss_pred             EEEccccceeEEEeccCCCeeEEe---ccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence            999877788888888888877665   4566888888887654332220                               


Q ss_pred             --------------------------------------------------------------------------------
Q psy6859         132 --------------------------------------------------------------------------------  131 (261)
Q Consensus       132 --------------------------------------------------------------------------------  131 (261)
                                                                                                      
T Consensus       316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~  395 (910)
T KOG1539|consen  316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL  395 (910)
T ss_pred             EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence                                                                                            


Q ss_pred             -------------------------------------------e-----cCCcceEEEEEEeCCCCceEEEEecCCCeEE
Q psy6859         132 -------------------------------------------L-----DFTPLTVECIHYLGDAIPTAAVSDQDSSHVH  163 (261)
Q Consensus       132 -------------------------------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  163 (261)
                                                                 +     ......+.+++.++-|.+  .+.|...|.|-
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF--~~IG~S~G~Id  473 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNF--VFIGYSKGTID  473 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCce--EEEeccCCeEE
Confidence                                                       0     000123455555555553  56777899999


Q ss_pred             EEEccCCCccceeec--cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC----C------------------
Q psy6859         164 IYDCKGNGTPLHVLD--RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF----P------------------  219 (261)
Q Consensus       164 i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~------------------  219 (261)
                      +|+++ ++-....+-  ..|..+|++++...-++.+++++.+|.+++||.....+..    .                  
T Consensus       474 ~fNmQ-SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~  552 (910)
T KOG1539|consen  474 RFNMQ-SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA  552 (910)
T ss_pred             EEEcc-cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh
Confidence            99998 887777771  3799999999999999999999999999999987654211    0                  


Q ss_pred             ----eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         220 ----KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       220 ----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                          .....+..+.+.++.+.+|.+.|++++|||||++|++++.|+
T Consensus       553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~  598 (910)
T KOG1539|consen  553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS  598 (910)
T ss_pred             cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC
Confidence                112355667778889999999999999999999999999985

>KOG0646|consensus

Probab=99.93  E-value=4.8e-24  Score=157.53  Aligned_cols=237  Identities=12%  Similarity=0.164  Sum_probs=183.0

Q ss_pred             eEEEec-CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEE
Q psy6859          16 FVITAS-NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVE   94 (261)
Q Consensus        16 ~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   94 (261)
                      +++++. .-..+.+|.+....  ......--.++|.+++-+|+|.+++.|+..|.+++|.+.+|..+..+..|.+++++.
T Consensus        52 yllsaq~~rp~l~vw~i~k~~--~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL  129 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKD--QVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL  129 (476)
T ss_pred             heeeecccCccccccccCchh--hhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence            444443 33467888887642  222222245789999999999999988899999999999999999999999999999


Q ss_pred             EEeecCCceeeeeeecCCCCeEEEEEcCC-------CceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEc
Q psy6859          95 CIHYLGDAIPTAAVSDQDSSRVHIYDCKG-------NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDC  167 (261)
Q Consensus        95 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  167 (261)
                      .++.++..+++.    +.||.|.+|++..       ..+......+.|...|+.+...+.+....+++.+.|.++++||+
T Consensus       130 ~fs~dgs~iiTg----skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl  205 (476)
T KOG0646|consen  130 KFSDDGSHIITG----SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL  205 (476)
T ss_pred             EEeCCCcEEEec----CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence            999999877776    9999999998642       22222233344566888888877766666999999999999999


Q ss_pred             cCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC-eeeeeecccccceeecCCCcc--ceee
Q psy6859         168 KGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP-KCVHFESKLDTDLFEFAKNKT--YPSG  244 (261)
Q Consensus       168 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~v~~  244 (261)
                      . .+.++.++  .....+.+++.+|.++.++.|+.+|.|.+.++..-.-+.. -...-.-..+..+..+.+|.+  .|++
T Consensus       206 S-~g~LLlti--~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITc  282 (476)
T KOG0646|consen  206 S-LGVLLLTI--TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITC  282 (476)
T ss_pred             c-cceeeEEE--ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeE
Confidence            9 89999888  4788999999999999999999999999888743211000 000111123455677888988  9999


Q ss_pred             eeECCCCceEEEeecCC
Q psy6859         245 LSFSPDGNKFVTISMDR  261 (261)
Q Consensus       245 ~~~s~~~~~l~s~~~Dg  261 (261)
                      ++.+-||.+|++|+.||
T Consensus       283 Lais~DgtlLlSGd~dg  299 (476)
T KOG0646|consen  283 LAISTDGTLLLSGDEDG  299 (476)
T ss_pred             EEEecCccEEEeeCCCC
Confidence            99999999999999997

>KOG0267|consensus

Probab=99.93  E-value=3.1e-26  Score=177.37  Aligned_cols=192  Identities=19%  Similarity=0.269  Sum_probs=171.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||..+|.++.|++ ..+|++|+.+|+|++||++..  +.++++.+|...+..+.|+|-+.+.++++.|..+++||.+..-
T Consensus        68 ~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G  145 (825)
T KOG0267|consen   68 GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG  145 (825)
T ss_pred             ccCCcceeeecCcchhhhcccccCCceeeeehhhh--hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence            7999999999999 889999999999999999987  8889999999999999999999999999999999999999888


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      +...+..+...+.+..+.|+|.++...    +.|..++|||+..++....++.+  ...+..+.|+|...  ++++|+.|
T Consensus       146 c~~~~~s~~~vv~~l~lsP~Gr~v~~g----~ed~tvki~d~~agk~~~ef~~~--e~~v~sle~hp~e~--Lla~Gs~d  217 (825)
T KOG0267|consen  146 CSHTYKSHTRVVDVLRLSPDGRWVASG----GEDNTVKIWDLTAGKLSKEFKSH--EGKVQSLEFHPLEV--LLAPGSSD  217 (825)
T ss_pred             ceeeecCCcceeEEEeecCCCceeecc----CCcceeeeecccccccccccccc--cccccccccCchhh--hhccCCCC
Confidence            888888877778889999999888776    88999999999999998888753  45678888888874  48999999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG  204 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  204 (261)
                      +++++||++ +.+.+.... .....|.+.+|+|++..+++|....
T Consensus       218 ~tv~f~dle-tfe~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  218 RTVRFWDLE-TFEVISSGK-PETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ceeeeeccc-eeEEeeccC-CccCCceeeeecCCceeeecCchhh
Confidence            999999998 788887776 6678899999999999888887654

>KOG4283|consensus

Probab=99.93  E-value=2.7e-24  Score=150.74  Aligned_cols=207  Identities=15%  Similarity=0.183  Sum_probs=152.7

Q ss_pred             eccccceeEEEEee-CCCEEEEEeCCCcEEEEEcccccee------e----eee-----ccCcceeEEEEeecCCceeee
Q psy6859          43 RSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFDMI------N----MIK-----LDFTPLTVECIHYLGDAIPTA  106 (261)
Q Consensus        43 ~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~~~------~----~~~-----~~~~~~~~~~~~~~~~~~~~~  106 (261)
                      +.|.+.|+.+...+ .|+|+++|+.||.+.+||+++....      .    .+.     .+.-.+....+.|...-++  
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF--  117 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF--  117 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee--
Confidence            56889999999987 7899999999999999999754311      1    000     1112233344444333222  


Q ss_pred             eeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC-ceEEEEecCCCeEEEEEccCCCccceeeccCcccCe
Q psy6859         107 AVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI-PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPV  185 (261)
Q Consensus       107 ~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v  185 (261)
                       .+++-|.++++||.++.+....++.   +..|..-+++|-.. ..++++|..+-.|++.|+. .+..-+.+. +|...|
T Consensus       118 -tssSFDhtlKVWDtnTlQ~a~~F~m---e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~Ls-GHr~~v  191 (397)
T KOG4283|consen  118 -TSSSFDHTLKVWDTNTLQEAVDFKM---EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTLS-GHRDGV  191 (397)
T ss_pred             -ecccccceEEEeecccceeeEEeec---CceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeeec-cccCce
Confidence             2358999999999999887777764   44778888887654 5678899999999999999 999999998 999999


Q ss_pred             EEEEEcCCCCE-EEEEcCCCeEEEeecccccccCCeeeeeeccc---ccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         186 VLIKFNPIYQV-VVSVDKAGILEYWSGYKQEFKFPKCVHFESKL---DTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       186 ~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      .++.|+|...+ |++|+.||.|++||++...--+   ...+...   ...++.-..|.+.|++++|+.++.++++++.|
T Consensus       192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf---~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd  267 (397)
T KOG4283|consen  192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF---RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD  267 (397)
T ss_pred             EEEEeccCceeEEEecCCCceEEEEEeeccccee---EEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence            99999999885 5999999999999997531100   1111111   11222344688999999999999999999876

>KOG2055|consensus

Probab=99.93  E-value=5.6e-24  Score=157.13  Aligned_cols=234  Identities=12%  Similarity=0.143  Sum_probs=186.8

Q ss_pred             CCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccc-cceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           4 SPITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHL-GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         4 ~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      -+|.+..|.| |. .+++++....+..||+.+.....+....++. ..+.....++++++|+..+..|.|.+....+++.
T Consensus       258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el  337 (514)
T KOG2055|consen  258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL  337 (514)
T ss_pred             CccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh
Confidence            5788999999 77 8999999999999999987555566666655 3567888899999999999999999999999999


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      +..++.+.. +....++.++..+++.    +.+|.|.+||++...+++.+..... ..-+.++.++++.+  +++|+..|
T Consensus       338 i~s~KieG~-v~~~~fsSdsk~l~~~----~~~GeV~v~nl~~~~~~~rf~D~G~-v~gts~~~S~ng~y--lA~GS~~G  409 (514)
T KOG2055|consen  338 ITSFKIEGV-VSDFTFSSDSKELLAS----GGTGEVYVWNLRQNSCLHRFVDDGS-VHGTSLCISLNGSY--LATGSDSG  409 (514)
T ss_pred             hheeeeccE-EeeEEEecCCcEEEEE----cCCceEEEEecCCcceEEEEeecCc-cceeeeeecCCCce--EEeccCcc
Confidence            999997765 4556666778877777    8899999999999988888875432 23456677777775  99999999


Q ss_pred             eEEEEEccC-----CCccceeeccCcccCeEEEEEcCCCCEEEEEc--CCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859         161 HVHIYDCKG-----NGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD--KAGILEYWSGYKQEFKFPKCVHFESKLDTDLF  233 (261)
Q Consensus       161 ~i~i~d~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  233 (261)
                      .|.|||...     ..+|+..+. .....|++|.|+|+.++||.++  .+..+++-.+.+.               ....
T Consensus       410 iVNIYd~~s~~~s~~PkPik~~d-NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~---------------TVFs  473 (514)
T KOG2055|consen  410 IVNIYDGNSCFASTNPKPIKTVD-NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC---------------TVFS  473 (514)
T ss_pred             eEEEeccchhhccCCCCchhhhh-hhheeeeeeeeCcchhhhhhhhhccccceEEEeccce---------------eeec
Confidence            999999651     246788886 7788999999999999997777  5677888887431               1111


Q ss_pred             ec---CCCccceeeeeECCCCceEEEeecCC
Q psy6859         234 EF---AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       234 ~~---~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+   ...-+.|++++|||.+.+||.|-.+|
T Consensus       474 NfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g  504 (514)
T KOG2055|consen  474 NFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG  504 (514)
T ss_pred             cCCCCCCcccceEEEEecCCCceEEeecCCC
Confidence            12   22345789999999999999998765

>KOG0269|consensus

Probab=99.93  E-value=1.3e-24  Score=169.55  Aligned_cols=202  Identities=16%  Similarity=0.182  Sum_probs=167.5

Q ss_pred             CCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEcccc
Q psy6859           2 HRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         2 H~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      |+..|+++.|++  ..+|++|+.||+|++||+...  .-..++.+....|..++|+| .+.+++++...|.+.+||++..
T Consensus       132 H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp  209 (839)
T KOG0269|consen  132 HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP  209 (839)
T ss_pred             hccceeeeeeccCCccEEEecCCCceEEEEeeecc--cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence            889999999998  689999999999999999987  66777888888999999998 6778999999999999999864


Q ss_pred             -ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          79 -DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                       ++...+..|..++.++.++|++.+++++    +.|++|+|||+.+.+.......+ ....+.++.|-|...+. +++++
T Consensus       210 ~r~~~k~~AH~GpV~c~nwhPnr~~lATG----GRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~h-LAtcs  283 (839)
T KOG0269|consen  210 DRCEKKLTAHNGPVLCLNWHPNREWLATG----GRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYH-LATCS  283 (839)
T ss_pred             hhHHHHhhcccCceEEEeecCCCceeeec----CCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccch-hhhhh
Confidence             4667777888999999999988877776    89999999999876554444333 33478899999998875 44332


Q ss_pred             --CCCeEEEEEccCCCccceeeccCcccCeEEEEEcC-CCCEEEEEcCCCeEEEeecc
Q psy6859         158 --DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP-IYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       158 --~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~  212 (261)
                        .|-.|++||++...-|..++. .|...++.++|.. |...|.+++.||++..-.++
T Consensus       284 mv~dtsV~VWDvrRPYIP~~t~~-eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  284 MVVDTSVHVWDVRRPYIPYATFL-EHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             ccccceEEEEeeccccccceeee-ccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence              477899999997788889998 9999999999976 34478999999987655443

>KOG1063|consensus

Probab=99.93  E-value=4.5e-24  Score=164.75  Aligned_cols=242  Identities=17%  Similarity=0.167  Sum_probs=174.2

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc--------------------------------------------
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG--------------------------------------------   35 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~--------------------------------------------   35 (261)
                      ||.+-|+++.|+| +..|++++.|.++.+|..++..                                            
T Consensus       265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk  344 (764)
T KOG1063|consen  265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK  344 (764)
T ss_pred             CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence            8999999999999 7789999999999999876430                                            


Q ss_pred             ------eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc----ceeeeeeccCcceeEEEEeecCCceee
Q psy6859          36 ------IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF----DMINMIKLDFTPLTVECIHYLGDAIPT  105 (261)
Q Consensus        36 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (261)
                            ......+.||.+.|..+.|+|.|++|++++.|.+-|++-.-..    ..+...+.|.....++.+-+....+  
T Consensus       345 t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F--  422 (764)
T KOG1063|consen  345 TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF--  422 (764)
T ss_pred             ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee--
Confidence                  0112234579999999999999999999999999999875411    1233334455444454444322222  


Q ss_pred             eeeecCCCCeEEEEEcCCC---------------c-------eeeEE---------------------------------
Q psy6859         106 AAVSDQDSSRVHIYDCKGN---------------D-------MINMI---------------------------------  130 (261)
Q Consensus       106 ~~~s~~~d~~i~i~d~~~~---------------~-------~~~~~---------------------------------  130 (261)
                        ++|...+.+++|+....               .       .+..+                                 
T Consensus       423 --VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L  500 (764)
T KOG1063|consen  423 --VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL  500 (764)
T ss_pred             --eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence              23356666666654310               0       00000                                 


Q ss_pred             -------------------eecCCcceEEEEEEeCCCCceEEEEecCC-----CeEEEEEccCCCccceeeccCcccCeE
Q psy6859         131 -------------------KLDFTPLTVECIHYLGDAIPTAAVSDQDS-----SHVHIYDCKGNGTPLHVLDRLHTKPVV  186 (261)
Q Consensus       131 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~v~  186 (261)
                                         ++..|...+.+++.+|++..  +++++..     ..|++|+.. +-..++.++ .|.-.|+
T Consensus       501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnl--iASaCKS~~~ehAvI~lw~t~-~W~~~~~L~-~HsLTVT  576 (764)
T KOG1063|consen  501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNL--IASACKSSLKEHAVIRLWNTA-NWLQVQELE-GHSLTVT  576 (764)
T ss_pred             cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCE--EeehhhhCCccceEEEEEecc-chhhhheec-ccceEEE
Confidence                               11233457899999999974  6666543     348999998 777788888 9999999


Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         187 LIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       187 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .|+|||||++|++.+.|.++.+|....+.           .........+.|+.-|+++.|+|++.+++|+|.|+
T Consensus       577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~-----------~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK  640 (764)
T KOG1063|consen  577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDI-----------KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK  640 (764)
T ss_pred             EEEECCCCcEEEEeecCceEEeeeeeccc-----------chhhhhccccccceEEEEcccCcccceeEEecCCc
Confidence            99999999999999999999999975321           11111233678999999999999999999999985

>KOG2048|consensus

Probab=99.92  E-value=4.7e-22  Score=153.32  Aligned_cols=233  Identities=16%  Similarity=0.151  Sum_probs=187.3

Q ss_pred             CCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           3 RSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         3 ~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      ...|.+++|+++..|++.+.+|.|.-||+.+.  +....+....+.|.+++.+|.++.++.|+.||.+..++...++...
T Consensus        69 drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l--k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~  146 (691)
T KOG2048|consen   69 DRSIESLAWAEGGRLFSSGLSGSITEWDLHTL--KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY  146 (691)
T ss_pred             CCceeeEEEccCCeEEeecCCceEEEEecccC--ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE
Confidence            46799999999778999999999999999987  7777888888999999999999999999999988888877776655


Q ss_pred             eeeccCcc--eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE-----eecC-CcceEEEEEEeCCCCceEEE
Q psy6859          83 MIKLDFTP--LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI-----KLDF-TPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        83 ~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~  154 (261)
                      ...+..+.  +..+.+.+++..++.+    +.||.|++||...+..+...     .... .+.-+.++.|..++.   ++
T Consensus       147 ~r~l~rq~sRvLslsw~~~~~~i~~G----s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t---I~  219 (691)
T KOG2048|consen  147 KRSLMRQKSRVLSLSWNPTGTKIAGG----SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST---IA  219 (691)
T ss_pred             EeecccccceEEEEEecCCccEEEec----ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc---EE
Confidence            54444443  4444555555555555    99999999999998776632     2222 455788888888775   99


Q ss_pred             EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce--
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL--  232 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--  232 (261)
                      +|...|+|.+||.. .+.+++.+. .|.+.|.+++.++++.++++++.|+.|..|...++.             .+.+  
T Consensus       220 sgDS~G~V~FWd~~-~gTLiqS~~-~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~-------------~~wv~~  284 (691)
T KOG2048|consen  220 SGDSAGTVTFWDSI-FGTLIQSHS-CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK-------------SEWVIN  284 (691)
T ss_pred             EecCCceEEEEccc-Ccchhhhhh-hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc-------------cceeee
Confidence            99999999999999 999999998 999999999999999999999999999988875431             1122  


Q ss_pred             eecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         233 FEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       233 ~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .....|...|.+++..++  .|++||.|.
T Consensus       285 ~~r~~h~hdvrs~av~~~--~l~sgG~d~  311 (691)
T KOG2048|consen  285 SRRDLHAHDVRSMAVIEN--ALISGGRDF  311 (691)
T ss_pred             ccccCCcccceeeeeecc--eEEecceee
Confidence            223458889999999887  888888773

>KOG1009|consensus

Probab=99.92  E-value=3.7e-23  Score=150.50  Aligned_cols=238  Identities=14%  Similarity=0.197  Sum_probs=177.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEecc--------C------CceeeeEEeeccccceeEEEEeeCCCEEEEEe
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQ--------E------EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA   65 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~--------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~   65 (261)
                      +|...|+++.|+| |++||+|+.+|.|.+|...        +      ......+.+.+|...|..++|+|++.++++++
T Consensus        63 ~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s  142 (434)
T KOG1009|consen   63 RHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS  142 (434)
T ss_pred             CCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee
Confidence            5999999999999 9999999999999999876        1      12345667889999999999999999999999


Q ss_pred             CCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe--------------
Q psy6859          66 SDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK--------------  131 (261)
Q Consensus        66 ~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~--------------  131 (261)
                      .|..+++||+..|+....+..+.+-....++.+.++.+...    +.|...+.+.+...+.+....              
T Consensus       143 ~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~----s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~  218 (434)
T KOG1009|consen  143 VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASK----SSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREG  218 (434)
T ss_pred             ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhh----ccCcccceeeeeeeeeeeeeeeeEeeecccCCCCc
Confidence            99999999999999999998888888888999988888887    777777766665443322221              


Q ss_pred             -------ecCCcceEEEEEEeCCCCceEEEEecC---------CCeEEEEEccCCCccceeeccCcccCeEEEEEcCC--
Q psy6859         132 -------LDFTPLTVECIHYLGDAIPTAAVSDQD---------SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPI--  193 (261)
Q Consensus       132 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~--  193 (261)
                             ...-+...+.++|+|++..  +++...         -+..++|+-....+|...+. ....+...+.|+|-  
T Consensus       219 ~s~rLfhDeTlksFFrRlsfTPdG~l--lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp-~~~k~~lavr~~pVy~  295 (434)
T KOG1009|consen  219 KSTRLFHDETLKSFFRRLSFTPDGSL--LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP-SPKKPALAVRFSPVYY  295 (434)
T ss_pred             ceeeeeecCchhhhhhhcccCCCCcE--EEcccceeeeCCceeeceeEeeccccccCceeecC-CCCcceEEEEeeeeEE
Confidence                   0111223456788899864  443211         23456676654456677775 55666666666652  


Q ss_pred             ----------------CCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC-CccceeeeeECCCCceEEE
Q psy6859         194 ----------------YQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       194 ----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s  256 (261)
                                      +-.+|.++. ..+.+||.++               ..++..... |-..|++++|++||..|+.
T Consensus       296 elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~---------------~~P~~~v~nihy~~iTDiaws~dg~~l~v  359 (434)
T KOG1009|consen  296 ELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQT---------------LEPLAVVDNIHYSAITDIAWSDDGSVLLV  359 (434)
T ss_pred             EeccccccccccccccceEEEEeec-ceEEEecccc---------------ccceEEEeeeeeeeecceeecCCCcEEEE
Confidence                            223455554 4699999843               456655544 8899999999999999999


Q ss_pred             eecCC
Q psy6859         257 ISMDR  261 (261)
Q Consensus       257 ~~~Dg  261 (261)
                      .|.||
T Consensus       360 SS~DG  364 (434)
T KOG1009|consen  360 SSTDG  364 (434)
T ss_pred             eccCC
Confidence            99997

>KOG1274|consensus

Probab=99.92  E-value=1.7e-22  Score=160.61  Aligned_cols=224  Identities=12%  Similarity=0.133  Sum_probs=178.9

Q ss_pred             CCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         2 H~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      |...|.+++.. ..+|++|+.+++|.+|...+.  +.-..+...+-++++++|+.+|++++.|+.|-.|++-++.+....
T Consensus        55 ~g~~v~~ia~~-s~~f~~~s~~~tv~~y~fps~--~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~  131 (933)
T KOG1274|consen   55 SGELVSSIACY-SNHFLTGSEQNTVLRYKFPSG--EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE  131 (933)
T ss_pred             cCceeEEEeec-ccceEEeeccceEEEeeCCCC--CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh
Confidence            44566666654 458999999999999999876  333334444578999999999999999999999999999999999


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC------cceEEEEEEeCCCCceEEEE
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT------PLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  155 (261)
                      ..+..+..++..+.+.|.++.+++.    +.||.|++||+.++.....+..-..      ...+..++|+|++..  ++.
T Consensus       132 ~~lrgh~apVl~l~~~p~~~fLAvs----s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~--la~  205 (933)
T KOG1274|consen  132 KVLRGHDAPVLQLSYDPKGNFLAVS----SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT--LAV  205 (933)
T ss_pred             eeecccCCceeeeeEcCCCCEEEEE----ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe--EEe
Confidence            9999999999999999999988887    8899999999999887666643211      235678899999765  555


Q ss_pred             ecCCCeEEEEEccCCCccceeecc-CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDR-LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                      ...|+.|++|+.. ...+...+.. .+...+..+.|+|+|+|||+++.||.|.|||+++-                   .
T Consensus       206 ~~~d~~Vkvy~r~-~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~-------------------~  265 (933)
T KOG1274|consen  206 PPVDNTVKVYSRK-GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH-------------------E  265 (933)
T ss_pred             eccCCeEEEEccC-CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc-------------------h
Confidence            5669999999998 8877777762 23444899999999999999999999999998531                   0


Q ss_pred             cCCCccceeeeeECCCCceE
Q psy6859         235 FAKNKTYPSGLSFSPDGNKF  254 (261)
Q Consensus       235 ~~~~~~~v~~~~~s~~~~~l  254 (261)
                      .......|.+++|.|+++.|
T Consensus       266 ~~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  266 RHEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             hccccceeEEEecCCCCCee
Confidence            12235678999999987754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.9e-21  Score=147.01  Aligned_cols=224  Identities=15%  Similarity=0.161  Sum_probs=159.5

Q ss_pred             CeEEEEEcC-CCeE-EEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEcccccee
Q psy6859           5 PITHVVVTK-TDFV-ITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMI   81 (261)
Q Consensus         5 ~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~   81 (261)
                      .+.+++|+| ++.+ ++++.++.|++||..+.  +....+..+.. +..++|+|+++.++++ +.++.+++||+.+++.+
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~  108 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVL  108 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE
Confidence            467899999 7765 67788999999999876  55555654433 5678999999877655 56899999999988777


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCC-CeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ..+..... ...+.+++++..++..    +.+ ..+.+||.++++....+....   ....+.|+|++.. +++++..++
T Consensus       109 ~~~~~~~~-~~~~~~~~dg~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~-l~~~~~~~~  179 (300)
T TIGR03866       109 AEIPVGVE-PEGMAVSPDGKIVVNT----SETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKE-LWVSSEIGG  179 (300)
T ss_pred             eEeeCCCC-cceEEECCCCCEEEEE----ecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCE-EEEEcCCCC
Confidence            76654332 3456778888776655    444 457788998877665544322   3467899999875 345666689


Q ss_pred             eEEEEEccCCCccceeeccCc-------ccCeEEEEEcCCCCEEEE-EcCCCeEEEeecccccccCCeeeeeecccccce
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLH-------TKPVVLIKFNPIYQVVVS-VDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL  232 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  232 (261)
                      .|++||++ +++.+..+. .+       ......++|+|++++++. ...++.+.+||+++               .+.+
T Consensus       180 ~v~i~d~~-~~~~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~---------------~~~~  242 (300)
T TIGR03866       180 TVSVIDVA-TRKVIKKIT-FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT---------------YEVL  242 (300)
T ss_pred             EEEEEEcC-cceeeeeee-ecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC---------------CcEE
Confidence            99999998 777766653 11       112356889999997644 45567899999854               3333


Q ss_pred             eecCCCccceeeeeECCCCceEEEee
Q psy6859         233 FEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       233 ~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      ..+. +...+.+++|+|+|++|++++
T Consensus       243 ~~~~-~~~~~~~~~~~~~g~~l~~~~  267 (300)
T TIGR03866       243 DYLL-VGQRVWQLAFTPDEKYLLTTN  267 (300)
T ss_pred             EEEE-eCCCcceEEECCCCCEEEEEc
Confidence            3332 345788999999999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0303|consensus

Probab=99.92  E-value=3.8e-23  Score=150.12  Aligned_cols=206  Identities=13%  Similarity=0.172  Sum_probs=163.3

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCc-----eeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEE
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEG-----IEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKV   72 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~   72 (261)
                      ||+.+|..++|+|  ++.||+||.|.+|.||.+..++     .+++..+.+|+..|--++|+|. .+.|++++.|.+|.+
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i  158 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI  158 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence            8999999999999  6789999999999999987643     2567889999999999999994 568999999999999


Q ss_pred             EEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          73 FDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        73 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      |++.+++.+.++. +...+..+.++.+|.++.+.    +.|+.|+|||.++++.+..-..+... .-...-|..++.  +
T Consensus       159 Wnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Tt----ckDKkvRv~dpr~~~~v~e~~~heG~-k~~Raifl~~g~--i  230 (472)
T KOG0303|consen  159 WNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTT----CKDKKVRVIDPRRGTVVSEGVAHEGA-KPARAIFLASGK--I  230 (472)
T ss_pred             EeccCCceeeecC-CCCeEEEEEeccCCceeeee----cccceeEEEcCCCCcEeeecccccCC-CcceeEEeccCc--e
Confidence            9999999888887 66667788888899988887    89999999999999988877544322 334555666665  2


Q ss_pred             EEEe---cCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEE-EEcCCCeEEEeecccc
Q psy6859         153 AVSD---QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVV-SVDKAGILEYWSGYKQ  214 (261)
Q Consensus       153 ~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~  214 (261)
                      +.+|   ..+..+.+||..+-.+++...+....+.|.---|.||...++ +|-.|+.|+.|.+.+.
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            4443   347889999987444554333224566677778899999875 4558999999998654

>KOG0270|consensus

Probab=99.92  E-value=2.2e-23  Score=153.26  Aligned_cols=203  Identities=10%  Similarity=0.125  Sum_probs=153.4

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      ||++.|.+++|+.  .+.||+||.|.+|++||+.++  ++..++..|.+.|.++.|+| ...+|++|+.|++|.+.|.+.
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG--KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCC--CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            7999999999997  679999999999999999998  88899999999999999998 567999999999999999984


Q ss_pred             -cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          78 -FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                       ...-..++.... +..+.+.+.....+   +.++.||+|+-+|+|.. +++.+++.|  ...|.++++++.... ++++
T Consensus       319 ~~~s~~~wk~~g~-VEkv~w~~~se~~f---~~~tddG~v~~~D~R~~~~~vwt~~AH--d~~ISgl~~n~~~p~-~l~t  391 (463)
T KOG0270|consen  319 PSNSGKEWKFDGE-VEKVAWDPHSENSF---FVSTDDGTVYYFDIRNPGKPVWTLKAH--DDEISGLSVNIQTPG-LLST  391 (463)
T ss_pred             ccccCceEEeccc-eEEEEecCCCceeE---EEecCCceEEeeecCCCCCceeEEEec--cCCcceEEecCCCCc-ceee
Confidence             223333343333 34445555443322   23489999999999976 677777764  457889999887775 4788


Q ss_pred             ecCCCeEEEEEccCCCccceeecc-CcccCeEEEEEcCCCC-EEEEEcCCCeEEEeeccc
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDR-LHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  213 (261)
                      ++.|+.+++|++. ...+...... -.-+...+.++.|+-. .++.|+..+.++|||+.+
T Consensus       392 ~s~d~~Vklw~~~-~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  392 ASTDKVVKLWKFD-VDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             ccccceEEEEeec-CCCCcccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence            9999999999997 4433222210 1123356667778766 568888888999999854

>KOG1539|consensus

Probab=99.92  E-value=8.9e-23  Score=160.70  Aligned_cols=227  Identities=13%  Similarity=0.164  Sum_probs=179.8

Q ss_pred             CeEEEEEcC------CCeEEEecCCCeEEEEeccCCceee-eEEee-----ccccceeEEEEeeCCCEEEEEeCCCcEEE
Q psy6859           5 PITHVVVTK------TDFVITASNDGHIKFWKKQEEGIEF-VKHFR-----SHLGVIHSICTNYNGTLLCTVASDKAMKV   72 (261)
Q Consensus         5 ~v~~~~~~~------~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~dg~v~~   72 (261)
                      +|..+++..      .+.++..-.+..++.|+..+.  .. ...+.     .-...+++++.++-|++.+.|...|.|-+
T Consensus       397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~--~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~  474 (910)
T KOG1539|consen  397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK--TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR  474 (910)
T ss_pred             cceeeecccchhhhhcceeEEecCcceEEEEeccCc--ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence            566666653      245666667788999999874  22 12222     23367899999999999999999999999


Q ss_pred             EEccccceeeee---eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC
Q psy6859          73 FDVINFDMINMI---KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI  149 (261)
Q Consensus        73 wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (261)
                      |++++|-....+   ..+..++..+.+..-++.++++    +.+|.+++||..+...+..+....   .+.++.++....
T Consensus       475 fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa----~~~Gilkfw~f~~k~l~~~l~l~~---~~~~iv~hr~s~  547 (910)
T KOG1539|consen  475 FNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA----GADGILKFWDFKKKVLKKSLRLGS---SITGIVYHRVSD  547 (910)
T ss_pred             EEcccCeeecccccCccccCceeEEEecCCCceEEEc----cCcceEEEEecCCcceeeeeccCC---Ccceeeeeehhh
Confidence            999999888877   3556666666666555556665    899999999999998888887654   456666665554


Q ss_pred             ceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccc
Q psy6859         150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLD  229 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  229 (261)
                        +++.+.+|-.|+++|.. +.+.++.|. +|.+.|++++|||||++|++++.|++|++||+.+               +
T Consensus       548 --l~a~~~ddf~I~vvD~~-t~kvvR~f~-gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt---------------~  608 (910)
T KOG1539|consen  548 --LLAIALDDFSIRVVDVV-TRKVVREFW-GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT---------------G  608 (910)
T ss_pred             --hhhhhcCceeEEEEEch-hhhhhHHhh-ccccceeeeEeCCCCcEEEEeecCCcEEEEeccC---------------c
Confidence              26677789999999999 999999998 9999999999999999999999999999999954               5


Q ss_pred             cceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         230 TDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       230 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      .++-.+. -..++.++.|||+|.+||+...|
T Consensus       609 ~lID~~~-vd~~~~sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  609 TLIDGLL-VDSPCTSLSFSPNGDFLATVHVD  638 (910)
T ss_pred             ceeeeEe-cCCcceeeEECCCCCEEEEEEec
Confidence            6665444 35788999999999999999876

>KOG0647|consensus

Probab=99.92  E-value=1.4e-22  Score=142.34  Aligned_cols=188  Identities=16%  Similarity=0.160  Sum_probs=140.4

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCC--EEEEEeCCCcEEEEEcccc
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGT--LLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~v~~wd~~~~   78 (261)
                      |.++|.+++|+. +..+++|+.|+.+++||+.++   ....+..|.++|..+.|-+...  .|+||+.|++|+.||.+..
T Consensus        71 ~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~  147 (347)
T KOG0647|consen   71 HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS  147 (347)
T ss_pred             cCCCeEEEEEccCCceEEeeccCCceEEEEccCC---CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence            889999999999 999999999999999999986   4556677999999999987544  8999999999999999987


Q ss_pred             ceeeeeeccCcc-----------------------------------------eeEEEEeecCCceeeeeeecCCCCeEE
Q psy6859          79 DMINMIKLDFTP-----------------------------------------LTVECIHYLGDAIPTAAVSDQDSSRVH  117 (261)
Q Consensus        79 ~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~s~~~d~~i~  117 (261)
                      .++.+++++...                                         ..++.+..+.+..+.    |+-+|.+.
T Consensus       148 ~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al----GsiEGrv~  223 (347)
T KOG0647|consen  148 NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL----GSIEGRVA  223 (347)
T ss_pred             CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe----eeecceEE
Confidence            777666543321                                         112222222222222    35566777


Q ss_pred             EEEcCCCceeeE--EeecCC-------cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEE
Q psy6859         118 IYDCKGNDMINM--IKLDFT-------PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLI  188 (261)
Q Consensus       118 i~d~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~  188 (261)
                      +..+..+.+...  ++.|..       -..|..++|+|....  +++.+.||++.+||-. ....++..+ .|..+|++.
T Consensus       224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt--lvTaGsDGtf~FWDkd-ar~kLk~s~-~~~qpItcc  299 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT--LVTAGSDGTFSFWDKD-ARTKLKTSE-THPQPITCC  299 (347)
T ss_pred             EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce--EEEecCCceEEEecch-hhhhhhccC-cCCCcccee
Confidence            666665433222  233221       236788999997654  8888889999999988 777788887 899999999


Q ss_pred             EEcCCCCEEEEE
Q psy6859         189 KFNPIYQVVVSV  200 (261)
Q Consensus       189 ~~~~~~~~l~~~  200 (261)
                      +|+.+|.++|-+
T Consensus       300 ~fn~~G~ifaYA  311 (347)
T KOG0647|consen  300 SFNRNGSIFAYA  311 (347)
T ss_pred             EecCCCCEEEEE
Confidence            999999987544

>KOG1063|consensus

Probab=99.91  E-value=1.5e-22  Score=156.54  Aligned_cols=255  Identities=12%  Similarity=0.144  Sum_probs=176.9

Q ss_pred             CCCCCeEEEEEcC-CC---eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859           1 MHRSPITHVVVTK-TD---FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~---~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~   76 (261)
                      ||..+|+|+.|-| .+   ++++|+.|+.|.+|.++......+.++++|...+.++  ..........+.|+.+.+||.+
T Consensus        52 GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~~v~vw~~~  129 (764)
T KOG1063|consen   52 GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADGTVSVWDKQ  129 (764)
T ss_pred             CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCceEEEeecC
Confidence            8999999999998 55   7999999999999999976667788888876655554  4333233334789999999995


Q ss_pred             ccc--eeeeeeccCcc--eeEEEEee-cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC-c
Q psy6859          77 NFD--MINMIKLDFTP--LTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI-P  150 (261)
Q Consensus        77 ~~~--~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  150 (261)
                      ..+  +...+......  ..+....+ .+..+.+   .|+.+..|.++.-...+.........|...|.+++|...+. .
T Consensus       130 ~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla---~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~  206 (764)
T KOG1063|consen  130 QDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLA---CGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDD  206 (764)
T ss_pred             CCceeeehheehhhhhHhhHHHhhhccCCcEEEE---ecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCc
Confidence            555  22222222211  11222223 2333333   36788888888777666666666777888999999986554 6


Q ss_pred             eEEEEecCCCeEEEEEccCCC--------------------ccceee---------ccCcccCeEEEEEcCCCCEEEEEc
Q psy6859         151 TAAVSDQDSSHVHIYDCKGNG--------------------TPLHVL---------DRLHTKPVVLIKFNPIYQVVVSVD  201 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~~--------------------~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~  201 (261)
                      .++++++.|..|+||.+...+                    .....+         -.+|+..|.++.|+|.+..|++++
T Consensus       207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS  286 (764)
T KOG1063|consen  207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS  286 (764)
T ss_pred             EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence            679999999999999886221                    011011         138999999999999999999999


Q ss_pred             CCCeEEEeecccccccC----------------------C------------eeeeeeccc---ccceeecCCCccceee
Q psy6859         202 KAGILEYWSGYKQEFKF----------------------P------------KCVHFESKL---DTDLFEFAKNKTYPSG  244 (261)
Q Consensus       202 ~dg~i~iwd~~~~~~~~----------------------~------------~~~~~~~~~---~~~~~~~~~~~~~v~~  244 (261)
                      .|.++.+|...++.-..                      +            ....|..+.   -.....+.||...|.+
T Consensus       287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~d  366 (764)
T KOG1063|consen  287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKD  366 (764)
T ss_pred             cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccccee
Confidence            99999999876541000                      0            001121011   1223345689999999


Q ss_pred             eeECCCCceEEEeecC
Q psy6859         245 LSFSPDGNKFVTISMD  260 (261)
Q Consensus       245 ~~~s~~~~~l~s~~~D  260 (261)
                      ++|+|.|.+|++.|.|
T Consensus       367 v~W~psGeflLsvs~D  382 (764)
T KOG1063|consen  367 VDWDPSGEFLLSVSLD  382 (764)
T ss_pred             eeecCCCCEEEEeccc
Confidence            9999999999999987

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=2.9e-21  Score=146.00  Aligned_cols=213  Identities=15%  Similarity=0.188  Sum_probs=151.8

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEE-EEEeCCCcEEEEEccccceeeeeeccCcceeE
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVINFDMINMIKLDFTPLTV   93 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   93 (261)
                      ..+++++.|+.+++||+.++  +.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+..+ ..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~--~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~   77 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATL--EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP-EL   77 (300)
T ss_pred             cEEEEecCCCEEEEEECCCC--ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc-cE
Confidence            57889999999999999876  6667777554 46789999999876 56678899999999988877766544333 45


Q ss_pred             EEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC-CeEEEEEccCCCc
Q psy6859          94 ECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SHVHIYDCKGNGT  172 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~  172 (261)
                      ..++++++.+++.   +..++.+++||+++.+.+..+....   .+..+.++|++..  ++++..+ ..+.+||.+ +++
T Consensus        78 ~~~~~~g~~l~~~---~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~--l~~~~~~~~~~~~~d~~-~~~  148 (300)
T TIGR03866        78 FALHPNGKILYIA---NEDDNLVTVIDIETRKVLAEIPVGV---EPEGMAVSPDGKI--VVNTSETTNMAHFIDTK-TYE  148 (300)
T ss_pred             EEECCCCCEEEEE---cCCCCeEEEEECCCCeEEeEeeCCC---CcceEEECCCCCE--EEEEecCCCeEEEEeCC-CCe
Confidence            5677777755433   3568999999999887776665322   3577999999985  4444444 457788987 666


Q ss_pred             cceeeccCcccCeEEEEEcCCCCEEEE-EcCCCeEEEeecccccccCCeeeeeecccccceeecCC-----C--ccceee
Q psy6859         173 PLHVLDRLHTKPVVLIKFNPIYQVVVS-VDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-----N--KTYPSG  244 (261)
Q Consensus       173 ~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~v~~  244 (261)
                      .+..+.  ....+..++|+|++++|+. +..++.|++||++++               +.+..+..     +  ......
T Consensus       149 ~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---------------~~~~~~~~~~~~~~~~~~~~~~  211 (300)
T TIGR03866       149 IVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---------------KVIKKITFEIPGVHPEAVQPVG  211 (300)
T ss_pred             EEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---------------eeeeeeeecccccccccCCccc
Confidence            655553  3345678999999998854 456999999999653               22222211     1  112356


Q ss_pred             eeECCCCceEEEe
Q psy6859         245 LSFSPDGNKFVTI  257 (261)
Q Consensus       245 ~~~s~~~~~l~s~  257 (261)
                      ++|+|++++++.+
T Consensus       212 i~~s~dg~~~~~~  224 (300)
T TIGR03866       212 IKLTKDGKTAFVA  224 (300)
T ss_pred             eEECCCCCEEEEE
Confidence            8899999986544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0302|consensus

Probab=99.91  E-value=8.3e-23  Score=147.53  Aligned_cols=200  Identities=15%  Similarity=0.155  Sum_probs=146.5

Q ss_pred             ccccceeEEEEeeCC--CEEEEEeCCCcEEEEEccc----------------cceeeeeeccCcceeEEEEeecCCceee
Q psy6859          44 SHLGVIHSICTNYNG--TLLCTVASDKAMKVFDVIN----------------FDMINMIKLDFTPLTVECIHYLGDAIPT  105 (261)
Q Consensus        44 ~~~~~v~~~~~~~~~--~~l~s~~~dg~v~~wd~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (261)
                      .|.+.++.+...+-+  .+.++=+..|.|.||++..                .+++.++..+......+.+++...   .
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~---g  225 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT---G  225 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc---c
Confidence            477778888777644  4556667889999999853                123444445555555666665221   2


Q ss_pred             eeeecCCCCeEEEEEcCCCcee-eEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC-c-cceeeccCcc
Q psy6859         106 AAVSDQDSSRVHIYDCKGNDMI-NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG-T-PLHVLDRLHT  182 (261)
Q Consensus       106 ~~~s~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~-~~~~~~~~~~  182 (261)
                      .+.+|..-+.|++|...++.-. .......+...|..++|+|.... ++++|+.|++|+|||+| .+ + .....+ .|+
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiR-s~~~~~~~~~k-Ah~  302 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIR-SGPKKAAVSTK-AHN  302 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEec-CCCccceeEee-ccC
Confidence            2334566788999998876432 22222335668899999998774 58999999999999999 55 2 222224 899


Q ss_pred             cCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCC-CceEEEeecCC
Q psy6859         183 KPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPD-GNKFVTISMDR  261 (261)
Q Consensus       183 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~Dg  261 (261)
                      +.|+.|.|+.+..+||+|+.||+++|||+++-            +.++++..++.|..+|+++.|+|. ...|+++|.|.
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~------------~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~  370 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQF------------KSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN  370 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEEhhhc------------cCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence            99999999999889999999999999999864            456889999999999999999994 45666666663

>KOG0642|consensus

Probab=99.91  E-value=2.9e-23  Score=156.88  Aligned_cols=238  Identities=14%  Similarity=0.191  Sum_probs=176.6

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC------CceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQE------EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      |.+.|+.++|.| ...|++++.||++++|+++.      ...+++.+|++|.++|.|+++.++++++++|+.||+|+.|+
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~  372 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN  372 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence            678899999999 88999999999999999932      23578899999999999999999999999999999999996


Q ss_pred             cccc----------ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEE
Q psy6859          75 VINF----------DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHY  144 (261)
Q Consensus        75 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  144 (261)
                      +...          .....+..+...+..+.++....+++.+    +.||++++|+.....+ ..+...........+++
T Consensus       373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc----s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC----SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             cCCCCCcccccCcchhccceeccccceeeeeecccccceeee----cCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence            5421          1222344555666677777777777777    9999999999887766 33332222233345555


Q ss_pred             eCCCCceEEEEecCCCeEEEEEccCCCccceeecc------CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC
Q psy6859         145 LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR------LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF  218 (261)
Q Consensus       145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  218 (261)
                      -...... .++...-+.-.++++. ....+..+..      .....+..+.++|.+.+.+++..|+.|+++|.       
T Consensus       448 ~ss~~a~-~~~s~~~~~~~~~~~e-v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn-------  518 (577)
T KOG0642|consen  448 TSSRPAH-SLASFRFGYTSIDDME-VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN-------  518 (577)
T ss_pred             ccchhHh-hhhhcccccccchhhh-hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc-------
Confidence            4433211 2222223333344444 4444444430      11245778899999999999999999999998       


Q ss_pred             CeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         219 PKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                              +++..+.....|...++++++.|+|.+|++++.||
T Consensus       519 --------~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~  553 (577)
T KOG0642|consen  519 --------KTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG  553 (577)
T ss_pred             --------cccccchheeeccceecceeecCCCceEEeecCCc
Confidence                    55888888899999999999999999999999986

>KOG2096|consensus

Probab=99.91  E-value=1.1e-22  Score=144.16  Aligned_cols=208  Identities=15%  Similarity=0.230  Sum_probs=147.6

Q ss_pred             eEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce--eeee--eccCcceeEEEEeecCCceeeeeeecCCCC
Q psy6859          39 VKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM--INMI--KLDFTPLTVECIHYLGDAIPTAAVSDQDSS  114 (261)
Q Consensus        39 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  114 (261)
                      +..+++|.+.|++++|+.||++|++++.|+.|++|++++...  -+.+  ..+....+.+.+.|+-..++..   .-...
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~---~~~g~  155 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS---VKRGN  155 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE---EccCC
Confidence            345789999999999999999999999999999999976421  1111  1122233456666665544332   24677


Q ss_pred             eEEEEEcCCCc----eeeEEeec------CCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccC
Q psy6859         115 RVHIYDCKGND----MINMIKLD------FTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKP  184 (261)
Q Consensus       115 ~i~i~d~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  184 (261)
                      ++++|.+...+    ........      .+...+..+-....+.+  +++++.|..|.+|+++  ++.+..+. .....
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~--imsas~dt~i~lw~lk--Gq~L~~id-tnq~~  230 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKY--IMSASLDTKICLWDLK--GQLLQSID-TNQSS  230 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceE--EEEecCCCcEEEEecC--Cceeeeec-ccccc
Confidence            88888765322    11111111      12223445555566654  8999999999999996  78888887 66666


Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         185 VVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       185 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      -+..+.||+|++|++++.--.+++|.+--++   .  -  ..+.-..++.+++|...|..++|||+.+.+++.|.||
T Consensus       231 n~~aavSP~GRFia~~gFTpDVkVwE~~f~k---d--G--~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  231 NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK---D--G--TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG  300 (420)
T ss_pred             ccceeeCCCCcEEEEecCCCCceEEEEEecc---C--c--chhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence            7788999999999999988899999863110   0  0  0122345678899999999999999999999999997

>KOG0322|consensus

Probab=99.90  E-value=1.4e-22  Score=140.02  Aligned_cols=238  Identities=17%  Similarity=0.195  Sum_probs=173.5

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|.+.|+++.|-.+++|.+|..-|.|++|++.+.  .....++ .|...|+.+.-.|++ .+.+-++|..+.+|++..+.
T Consensus        12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~--r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia~s~   88 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTE--RDLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTIAYSA   88 (323)
T ss_pred             cccchheehhhccchhhhcccccceEEEEEeecC--ccchhhhhhccceeeceeecCCc-chhhcCCCceEEEEEccCcc
Confidence            5888999999988777999999999999999987  5666666 567889999988874 68888999999999986532


Q ss_pred             eeeeee--------------ccCc-------------------------------------ceeEEEEe---ecCCceee
Q psy6859          80 MINMIK--------------LDFT-------------------------------------PLTVECIH---YLGDAIPT  105 (261)
Q Consensus        80 ~~~~~~--------------~~~~-------------------------------------~~~~~~~~---~~~~~~~~  105 (261)
                      .+..-.              ....                                     ....++..   ..+..+  
T Consensus        89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~--  166 (323)
T KOG0322|consen   89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF--  166 (323)
T ss_pred             eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE--
Confidence            221100              0000                                     00111111   012222  


Q ss_pred             eeeecCCCCeEEEEEcCCCceeeEEe--------ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCC-Ccc--c
Q psy6859         106 AAVSDQDSSRVHIYDCKGNDMINMIK--------LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN-GTP--L  174 (261)
Q Consensus       106 ~~~s~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~--~  174 (261)
                      .++.|..+|.+.+||+.++..+-.+.        ...+...+.++.|.+....  -++|+-+..+..|.+... +.+  -
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r--Gisgga~dkl~~~Sl~~s~gslq~~  244 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR--GISGGADDKLVMYSLNHSTGSLQIR  244 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC--CcCCCccccceeeeeccccCccccc
Confidence            23446889999999999874333221        1234457888888876554  677888888999998733 211  1


Q ss_pred             eeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceE
Q psy6859         175 HVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF  254 (261)
Q Consensus       175 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  254 (261)
                      .+++ -.+..|..+.+-||++.+|+++.|+.|++|..               ++.+++..++-|...|++++|+|+...+
T Consensus       245 ~e~~-lknpGv~gvrIRpD~KIlATAGWD~RiRVysw---------------rtl~pLAVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  245 KEIT-LKNPGVSGVRIRPDGKILATAGWDHRIRVYSW---------------RTLNPLAVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             ceEE-ecCCCccceEEccCCcEEeecccCCcEEEEEe---------------ccCCchhhhhhhhcceeEEEeCCCCchh
Confidence            2222 33556888999999999999999999999998               4588999999999999999999999999


Q ss_pred             EEeecCC
Q psy6859         255 VTISMDR  261 (261)
Q Consensus       255 ~s~~~Dg  261 (261)
                      |++|.|+
T Consensus       309 AaaskD~  315 (323)
T KOG0322|consen  309 AAASKDA  315 (323)
T ss_pred             hhccCCc
Confidence            9999985

>KOG1445|consensus

Probab=99.90  E-value=1.1e-22  Score=156.44  Aligned_cols=118  Identities=11%  Similarity=0.133  Sum_probs=92.2

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceee----eEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEF----VKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      +|.+.|+.+.|+|  +.+||+|+.|..|+||.+..+..+.    ...+.+.+-.|.++.|+|...-|+..+..|.+++||
T Consensus        77 ~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D  156 (1012)
T KOG1445|consen   77 AHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITD  156 (1012)
T ss_pred             cccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEE
Confidence            6999999999999  6799999999999999998432121    123333445688999999655566666789999999


Q ss_pred             ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC
Q psy6859          75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK  122 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~  122 (261)
                      +.+++.+.++..+...+....++.+|..+++.    ..|+.|+|||.+
T Consensus       157 ~stqk~~~el~~h~d~vQSa~WseDG~llats----cKdkqirifDPR  200 (1012)
T KOG1445|consen  157 ISTQKTAVELSGHTDKVQSADWSEDGKLLATS----CKDKQIRIFDPR  200 (1012)
T ss_pred             cccCceeecccCCchhhhccccccCCceEeee----cCCcceEEeCCc
Confidence            99999998888777777888888888766665    677777777765

>KOG1034|consensus

Probab=99.90  E-value=1.3e-22  Score=144.17  Aligned_cols=236  Identities=16%  Similarity=0.236  Sum_probs=172.8

Q ss_pred             CCCCeEEEEEcC-----CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEc
Q psy6859           2 HRSPITHVVVTK-----TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         2 H~~~v~~~~~~~-----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~   75 (261)
                      |.+....++|+-     +-++|.|+.-|.|+|.|+.+.  ++...+.+|...|+.+.+.|+ .+++++++.|..|++|++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI  165 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI  165 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence            556667777763     348899999999999999987  888999999999999999995 579999999999999999


Q ss_pred             cccceeeeee---ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe---------------------
Q psy6859          76 INFDMINMIK---LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK---------------------  131 (261)
Q Consensus        76 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~---------------------  131 (261)
                      ++..++..+-   .|...+..+.++.++.+++++    +.|..+++|++...+....++                     
T Consensus       166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~Sc----GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f  241 (385)
T KOG1034|consen  166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASC----GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF  241 (385)
T ss_pred             cCCeEEEEecccccccCcEEEEEEcCCCCeeecc----CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence            9999988775   345556667778888888777    999999999998443221111                     


Q ss_pred             -----ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc-------------ceeeccCcccCeEEE--EEc
Q psy6859         132 -----LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP-------------LHVLDRLHTKPVVLI--KFN  191 (261)
Q Consensus       132 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~~~~~v~~~--~~~  191 (261)
                           ...|...|.|+.|-.+.    +++-+-++.|..|....-.+.             +.+++ -....|+-+  +|+
T Consensus       242 p~fst~diHrnyVDCvrw~gd~----ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~d  316 (385)
T KOG1034|consen  242 PDFSTTDIHRNYVDCVRWFGDF----ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAFD  316 (385)
T ss_pred             ccccccccccchHHHHHHHhhh----eeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEeec
Confidence                 11223345555555544    778788899999987211211             23333 334456666  456


Q ss_pred             CCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec--CCCccceeeeeECCCCceEEEeecCC
Q psy6859         192 PIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF--AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       192 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |-++.||.|...|.+.+||++..+.             ....++  ..-...|.+.+||.||..|+...+|+
T Consensus       317 ~~~~~la~gnq~g~v~vwdL~~~ep-------------~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~  375 (385)
T KOG1034|consen  317 PWQKMLALGNQSGKVYVWDLDNNEP-------------PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG  375 (385)
T ss_pred             HHHHHHhhccCCCcEEEEECCCCCC-------------ccCceEEeccccceeeeeeecccCcEEEEEeCCC
Confidence            7788999999999999999976321             011111  12356889999999999999988875

>KOG1188|consensus

Probab=99.90  E-value=4.3e-22  Score=142.09  Aligned_cols=241  Identities=12%  Similarity=0.160  Sum_probs=175.4

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEccccceeeeeeccCcc--
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVINFDMINMIKLDFTP--   90 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~--   90 (261)
                      ..+|++...|.|++||..++  +.+..++++...++.+.|..  ....+.+|+.||+|++||++.......+....++  
T Consensus        41 ~~vav~lSngsv~lyd~~tg--~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG--QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccch--hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            35888999999999999986  78899999999999999976  4668999999999999999987766665544433  


Q ss_pred             -eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce-eeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEcc
Q psy6859          91 -LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM-INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCK  168 (261)
Q Consensus        91 -~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  168 (261)
                       ..+......++.+.+..--...+-.|.+||++..+. +..+.. .|..-|+++.|+|.... ++++|+.||.|.+||+.
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-SH~DDVT~lrFHP~~pn-lLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-SHNDDVTQLRFHPSDPN-LLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh-hccCcceeEEecCCCCC-eEEeecccceEEeeecC
Confidence             333333333443333311124577899999998766 555543 35668999999999886 48999999999999997


Q ss_pred             CCC---ccceeeccCcccCeEEEEEcCCC-CEEEEEcCCCeEEEeecccccccC----Cee-------------------
Q psy6859         169 GNG---TPLHVLDRLHTKPVVLIKFNPIY-QVVVSVDKAGILEYWSGYKQEFKF----PKC-------------------  221 (261)
Q Consensus       169 ~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~----~~~-------------------  221 (261)
                      ...   .++.++  .+...|..+.|..++ +.|.+-+......+|+++.+.-..    |..                   
T Consensus       197 ~d~EeDaL~~vi--N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~  274 (376)
T KOG1188|consen  197 KDNEEDALLHVI--NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS  274 (376)
T ss_pred             CCcchhhHHHhh--cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc
Confidence            332   345555  588889999999877 357777888899999987653111    000                   


Q ss_pred             -------------------eeee----cccccceeecCC-CccceeeeeECCCCceEEEeecCC
Q psy6859         222 -------------------VHFE----SKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       222 -------------------~~~~----~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                         .++.    ....+.+..+.+ |...|+++.|...+.++.+||+||
T Consensus       275 ~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG  338 (376)
T KOG1188|consen  275 PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDG  338 (376)
T ss_pred             CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCc
Confidence                               0000    112334445555 777889999999999999999997

>KOG2919|consensus

Probab=99.90  E-value=2.1e-21  Score=137.92  Aligned_cols=233  Identities=11%  Similarity=0.144  Sum_probs=176.5

Q ss_pred             EEEEEcC-CCeEEEecCCCeEEEEeccCCc----------eeeeEEeec-cccceeEEEEe-------eCCCEEEEEeCC
Q psy6859           7 THVVVTK-TDFVITASNDGHIKFWKKQEEG----------IEFVKHFRS-HLGVIHSICTN-------YNGTLLCTVASD   67 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~----------~~~~~~~~~-~~~~v~~~~~~-------~~~~~l~s~~~d   67 (261)
                      ..+.|+| |..|++-+.|..+.+|++....          .+....++- ....|...+|-       |+..++++.+++
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            4578999 9999999999999999985311          011111111 22456666774       677799999999


Q ss_pred             CcEEEEEccccceeeeeecc-----CcceeEEEEeecCCceeeeeeecCCCCeEEEEEc-CCCceeeEEeec-----CCc
Q psy6859          68 KAMKVFDVINFDMINMIKLD-----FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC-KGNDMINMIKLD-----FTP  136 (261)
Q Consensus        68 g~v~~wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~-~~~~~~~~~~~~-----~~~  136 (261)
                      .-|++||.-+|+....+..-     .....++.++++|.++++     +..+.|+++|+ +.++........     ...
T Consensus       133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-----GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~  207 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-----GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK  207 (406)
T ss_pred             CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-----cccceEEEeeccCCCCCCcchhhhhccccccc
Confidence            99999999999988777532     234567889999999887     48999999999 555433322211     124


Q ss_pred             ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeeccccc
Q psy6859         137 LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQE  215 (261)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  215 (261)
                      ..+.+++|+|.... .++.|+...++-||.-. ...++..+- +|.+.|+.++|.++|+.|++|. .|-.|..||++   
T Consensus       208 giisc~a~sP~~~~-~~a~gsY~q~~giy~~~-~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR---  281 (406)
T KOG2919|consen  208 GIISCFAFSPMDSK-TLAVGSYGQRVGIYNDD-GRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR---  281 (406)
T ss_pred             ceeeeeeccCCCCc-ceeeecccceeeeEecC-CCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEeeh---
Confidence            57889999998764 37888888899999887 788998886 9999999999999999999988 57789999997   


Q ss_pred             ccCCeeeeeecccccceeecCCCcc-ceee--eeECCCCceEEEeecCC
Q psy6859         216 FKFPKCVHFESKLDTDLFEFAKNKT-YPSG--LSFSPDGNKFVTISMDR  261 (261)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~s~~~~~l~s~~~Dg  261 (261)
                                 ....++..+..|.. .-..  ....|++++|++|+.||
T Consensus       282 -----------~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG  319 (406)
T KOG2919|consen  282 -----------YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG  319 (406)
T ss_pred             -----------hccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence                       45677778877765 2223  44578999999998886

>KOG0290|consensus

Probab=99.90  E-value=2e-21  Score=136.12  Aligned_cols=242  Identities=14%  Similarity=0.136  Sum_probs=173.8

Q ss_pred             CCCCeEEEEEcC-C-----CeEEEecCCCeEEEEeccC--CceeeeEEe-----eccccceeEEEEee-CCCEEEEEeCC
Q psy6859           2 HRSPITHVVVTK-T-----DFVITASNDGHIKFWKKQE--EGIEFVKHF-----RSHLGVIHSICTNY-NGTLLCTVASD   67 (261)
Q Consensus         2 H~~~v~~~~~~~-~-----~~l~s~~~d~~i~iw~~~~--~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~d   67 (261)
                      |.-+++.+.|.| .     ++|||.+  -.+|+|.+..  ...++...+     ..+..++++..|+. +-+++.+++-|
T Consensus        95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD  172 (364)
T KOG0290|consen   95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID  172 (364)
T ss_pred             CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence            667899999998 3     2566544  4899999874  222222222     23567899999986 77799999999


Q ss_pred             CcEEEEEccccce---eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE-eecCCcceEEEEE
Q psy6859          68 KAMKVFDVINFDM---INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI-KLDFTPLTVECIH  143 (261)
Q Consensus        68 g~v~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~  143 (261)
                      -+..|||++++..   ...+-.|...+..+.+...+..++   ++.+.||.+++||++..+.-..+ +..........++
T Consensus       173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~F---ASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs  249 (364)
T KOG0290|consen  173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVF---ASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS  249 (364)
T ss_pred             CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceE---EEecCCCcEEEEEecccccceEEecCCCCCCcceeec
Confidence            9999999998733   334445666666666665444332   23389999999999987654433 2222245778899


Q ss_pred             EeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCeee
Q psy6859         144 YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCV  222 (261)
Q Consensus       144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~  222 (261)
                      |+++..+.++..+.+...|.|.|+|....++.+++ .|.+.|+.++|.|... .|.+++.|....+||+.+.-.      
T Consensus       250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~------  322 (364)
T KOG0290|consen  250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR------  322 (364)
T ss_pred             cCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEecCCCCceeeecCCcceEEEEecccccc------
Confidence            99887765444455667899999998889999998 9999999999999765 899999999999999965210      


Q ss_pred             eeecccccceeecCCCccceeeeeECC-CCceEEEeec
Q psy6859         223 HFESKLDTDLFEFAKNKTYPSGLSFSP-DGNKFVTISM  259 (261)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~  259 (261)
                         .....++..+. -.+.|+.+.|+| .+.+|+.+..
T Consensus       323 ---~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  323 ---ENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             ---cCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence               01122333333 467899999996 5678887754

>KOG4227|consensus

Probab=99.90  E-value=1.2e-21  Score=142.76  Aligned_cols=254  Identities=13%  Similarity=0.162  Sum_probs=182.2

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCC----ceeeeEEe-eccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEE----GIEFVKHF-RSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~----~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      ||.+.|+++.|+. +++|++|+.|-.+++|+++..    ..+++... ..|.+.|.|++|...++++++|..+++|.+.|
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            6999999999999 999999999999999998752    11333332 23668999999999999999999999999999


Q ss_pred             ccccceeeeeeccCc--ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEEEEeCCCCce
Q psy6859          75 VINFDMINMIKLDFT--PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECIHYLGDAIPT  151 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (261)
                      +.+.+.+..+.....  .+..+..+|..+.++++    +.++.|.+||.+... +...+-....+.....+.|+|....+
T Consensus       134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~----t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVV----TRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             cccceeeeeecccCcccceeecccCCCCceEEEE----ecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            999888877664432  45556667776666666    899999999999765 55555555567788899999998864


Q ss_pred             EEEEecCCCeEEEEEccCCCccceee-----------------------------------------------ccCcc--
Q psy6859         152 AAVSDQDSSHVHIYDCKGNGTPLHVL-----------------------------------------------DRLHT--  182 (261)
Q Consensus       152 ~~~~~~~d~~i~i~d~~~~~~~~~~~-----------------------------------------------~~~~~--  182 (261)
                       +++.+..+-+-+||.+....++...                                               +..|+  
T Consensus       210 -i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~  288 (609)
T KOG4227|consen  210 -ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN  288 (609)
T ss_pred             -EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence             6666778889999987432221110                                               00111  


Q ss_pred             -----cCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC--------eeeeeecccccceeecCCCccceeeeeECC
Q psy6859         183 -----KPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP--------KCVHFESKLDTDLFEFAKNKTYPSGLSFSP  249 (261)
Q Consensus       183 -----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  249 (261)
                           ..+.+++|.-|. -+++|+.+-.|++|.+....-...        ...+-+....+.+..+++|..-++.+.|+|
T Consensus       289 GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~  367 (609)
T KOG4227|consen  289 GYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ  367 (609)
T ss_pred             cceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence                 123344554333 488899998999999864321111        111122233455678899999999999999


Q ss_pred             CCceEEEeecC
Q psy6859         250 DGNKFVTISMD  260 (261)
Q Consensus       250 ~~~~l~s~~~D  260 (261)
                      ...+|++.|-+
T Consensus       368 H~~~l~SSGVE  378 (609)
T KOG4227|consen  368 HNNLLVSSGVE  378 (609)
T ss_pred             CcceEeccchh
Confidence            98888887643

>KOG4378|consensus

Probab=99.89  E-value=5.4e-22  Score=148.33  Aligned_cols=232  Identities=14%  Similarity=0.161  Sum_probs=177.2

Q ss_pred             CeEEEEEcCCCeEE--EecCCCeEEEEeccCC--ceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           5 PITHVVVTKTDFVI--TASNDGHIKFWKKQEE--GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         5 ~v~~~~~~~~~~l~--s~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      .+.++.|+..+.|+  +.+.|..+++|.-...  ....+....+.  .-.|++......|+++|+..+.|+|||++...+
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~  113 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLI  113 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence            37888898844344  4467889999986543  12233333332  334555545558999999999999999997777


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      .+.++.+...+..+.+.....+++++    +..|.|.|..+.++.....+... ....++-+.|++.... ++.+++++|
T Consensus       114 hr~lkdh~stvt~v~YN~~DeyiAsv----s~gGdiiih~~~t~~~tt~f~~~-sgqsvRll~ys~skr~-lL~~asd~G  187 (673)
T KOG4378|consen  114 HRFLKDHQSTVTYVDYNNTDEYIASV----SDGGDIIIHGTKTKQKTTTFTID-SGQSVRLLRYSPSKRF-LLSIASDKG  187 (673)
T ss_pred             hhhccCCcceeEEEEecCCcceeEEe----ccCCcEEEEecccCccccceecC-CCCeEEEeecccccce-eeEeeccCC
Confidence            78888787778888888888888888    88999999999998777777654 2346778999998875 477888999


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      .|.+||.. ...++..+...|..+...|+|+|... +|++.+.|..|.+||...+               +....+. ..
T Consensus       188 ~VtlwDv~-g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~---------------~s~~~l~-y~  250 (673)
T KOG4378|consen  188 AVTLWDVQ-GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ---------------ASTDRLT-YS  250 (673)
T ss_pred             eEEEEecc-CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc---------------cccceee-ec
Confidence            99999998 66777766558999999999999765 6799999999999998642               2222222 45


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+...++|+++|.+|+.|...|
T Consensus       251 ~Plstvaf~~~G~~L~aG~s~G  272 (673)
T KOG4378|consen  251 HPLSTVAFSECGTYLCAGNSKG  272 (673)
T ss_pred             CCcceeeecCCceEEEeecCCc
Confidence            6789999999999999997654

>KOG1408|consensus

Probab=99.89  E-value=1.5e-21  Score=152.04  Aligned_cols=204  Identities=16%  Similarity=0.162  Sum_probs=167.1

Q ss_pred             CCCCCeEEEEEcC----CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCC--CEEEEEeCCCcEEEEE
Q psy6859           1 MHRSPITHVVVTK----TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNG--TLLCTVASDKAMKVFD   74 (261)
Q Consensus         1 gH~~~v~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~v~~wd   74 (261)
                      .|...|.|+.|+.    .++||+++.|..|.|+|+.. +..++.++.+|...|+++.|.-+|  ..+++++.|+.|.+--
T Consensus       499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~  577 (1080)
T KOG1408|consen  499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRV  577 (1080)
T ss_pred             cccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheeh
Confidence            4899999999994    36899999999999999875 457889999999999999998876  7899999998775433


Q ss_pred             ccccceeeeee-----ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC-CcceEEEEEEeCCC
Q psy6859          75 VINFDMINMIK-----LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF-TPLTVECIHYLGDA  148 (261)
Q Consensus        75 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  148 (261)
                      .+.......+.     ........+.+.+..+.++++    ..|+.|+|||+.+++..+.++... +.+....+...|.+
T Consensus       578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~----cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg  653 (1080)
T KOG1408|consen  578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV----CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG  653 (1080)
T ss_pred             hccccCceeccccccccccceEEEeeeCCCcceEEEE----ecccceEEEeccccceeeeecccccCCCceEEEEECCCc
Confidence            22111111111     122334556666777777666    899999999999999999998654 44678899999999


Q ss_pred             CceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         149 IPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       149 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .|  +++...|.++.++|.. +++++.++. +|...|+.+.|.+|-+.|++.+.||.|.+|.+..
T Consensus       654 iY--~atScsdktl~~~Df~-sgEcvA~m~-GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  654 IY--LATSCSDKTLCFVDFV-SGECVAQMT-GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cE--EEEeecCCceEEEEec-cchhhhhhc-CcchheeeeeecccchhheeecCCceEEEEECch
Confidence            87  8888889999999999 999999998 9999999999999999999999999999999753

>KOG1587|consensus

Probab=99.88  E-value=1.8e-20  Score=147.43  Aligned_cols=239  Identities=15%  Similarity=0.109  Sum_probs=168.4

Q ss_pred             CCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeE----EeeccccceeEEEEeeCC--CEEEEEeCCCcEEEEE
Q psy6859           3 RSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVK----HFRSHLGVIHSICTNYNG--TLLCTVASDKAMKVFD   74 (261)
Q Consensus         3 ~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~v~~wd   74 (261)
                      +.+|+|+.|+|  .++++.|..+|.|.+||+......+..    ....|..+++.+.|..+.  .-+++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            46899999999  678999999999999999875432222    234588999999997643  4599999999999998


Q ss_pred             ccccce-ee-----eee------ccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCCceee------EEeecCC
Q psy6859          75 VINFDM-IN-----MIK------LDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMIN------MIKLDFT  135 (261)
Q Consensus        75 ~~~~~~-~~-----~~~------~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~------~~~~~~~  135 (261)
                      ++.-.. ..     ...      ........+.+.+. ...++.    |+.+|.|.--+....+.-.      ......+
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV----GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h  397 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV----GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH  397 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEE----EcCCcEEEEEeccCCccccccccccccccccc
Confidence            764322 11     111      11122344444443 333333    4888988874433322211      1122235


Q ss_pred             cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccc
Q psy6859         136 PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  214 (261)
                      .+.+.++.++|-+... +.+++ |.+++||.......++..+. .+...+++++|||... .++++..||.|.+||+.. 
T Consensus       398 ~g~v~~v~~nPF~~k~-fls~g-DW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~-  473 (555)
T KOG1587|consen  398 IGPVYAVSRNPFYPKN-FLSVG-DWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ-  473 (555)
T ss_pred             CcceEeeecCCCccce-eeeec-cceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCCceehhhhhc-
Confidence            6789999999988764 44444 99999999874557777776 6777899999999876 668888999999999975 


Q ss_pred             cccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         215 EFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                  ....++...+.+....+.+.|+++|+.|++|...|
T Consensus       474 ------------~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G  508 (555)
T KOG1587|consen  474 ------------DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG  508 (555)
T ss_pred             ------------cccCCcccccccccccceeecCCCCcEEEEecCCC
Confidence                        44566666655666778889999999999998765

>KOG2110|consensus

Probab=99.88  E-value=6.1e-20  Score=132.54  Aligned_cols=228  Identities=18%  Similarity=0.233  Sum_probs=169.2

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC--CcEEEEEccccc
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD--KAMKVFDVINFD   79 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~v~~wd~~~~~   79 (261)
                      ...+..+.|+. ...|..|+.||. ++++.+..+ ++. ......-.|..+-|+.+  ++|..+.+  +.+++.++..+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~-k~~-~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFE-KCF-SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCce-eEEecCchH-Hhh-cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence            35677888888 667777888765 577766532 211 11112234555566654  66666654  359999999888


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec-CCcceEEEEEEeCCCCceEEEEecC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD-FTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      .+..+..+.   .++.+.-+.+++.++     -...|+|||+++-++++++... .++..+.++++++.+.++.+-....
T Consensus        80 ~ICe~~fpt---~IL~VrmNr~RLvV~-----Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t  151 (391)
T KOG2110|consen   80 TICEIFFPT---SILAVRMNRKRLVVC-----LEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT  151 (391)
T ss_pred             eEEEEecCC---ceEEEEEccceEEEE-----EcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence            888877553   345555555566555     3556999999999999998765 5666788888888887755545556


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCe-EEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGI-LEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      .|.|.+||.. +-+++..+. .|++++-+++|+|+|.+||++++.|+ ||++.+.+               ++.+++++.
T Consensus       152 ~GdV~l~d~~-nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~---------------G~kl~eFRR  214 (391)
T KOG2110|consen  152 SGDVVLFDTI-NLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE---------------GQKLYEFRR  214 (391)
T ss_pred             CceEEEEEcc-cceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC---------------ccEeeeeeC
Confidence            7999999999 889999998 99999999999999999999999997 68999854               666766654


Q ss_pred             --CccceeeeeECCCCceEEEeecC
Q psy6859         238 --NKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       238 --~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                        ....|.+++|+|++++|++.|..
T Consensus       215 G~~~~~IySL~Fs~ds~~L~~sS~T  239 (391)
T KOG2110|consen  215 GTYPVSIYSLSFSPDSQFLAASSNT  239 (391)
T ss_pred             CceeeEEEEEEECCCCCeEEEecCC
Confidence              34578999999999999987753

>KOG2106|consensus

Probab=99.88  E-value=2.3e-20  Score=139.92  Aligned_cols=234  Identities=11%  Similarity=0.126  Sum_probs=180.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.+..+.++.+| .+++++++.|+.+++|+  +.  +++.+.. -..++.++.|+|.| .++.|...|...+.|.++..
T Consensus       366 gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~--k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~  439 (626)
T KOG2106|consen  366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH--KLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD  439 (626)
T ss_pred             ecccceeeEEcCCChhheeeccCcceEEEcc--CC--ceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence            7899999999999 88999999999999999  32  3333322 34788999999999 99999999999999998855


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+..- ....+..++.++++|..++..    +.|+.|.||-+.............+...++.+.|++|+++  +.+.+.|
T Consensus       440 lv~~~-~d~~~ls~v~ysp~G~~lAvg----s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~--~~~~S~d  512 (626)
T KOG2106|consen  440 LVTIH-TDNEQLSVVRYSPDGAFLAVG----SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF--LVSNSGD  512 (626)
T ss_pred             eEEEE-ecCCceEEEEEcCCCCEEEEe----cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce--EEeccCc
Confidence            55544 447889999999999988877    9999999999876544333332223378999999999987  8888889


Q ss_pred             CeEEEEEccCCCccceeec-----------------cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeee
Q psy6859         160 SHVHIYDCKGNGTPLHVLD-----------------RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCV  222 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~-----------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  222 (261)
                      -.|..|... .-+.+...+                 ..+...|..++-+...+++|+|...|.|++|...--        
T Consensus       513 ~eiLyW~~~-~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~--------  583 (626)
T KOG2106|consen  513 YEILYWKPS-ECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS--------  583 (626)
T ss_pred             eEEEEEccc-cCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC--------
Confidence            999999443 222221111                 134455666777788889999999999999986421        


Q ss_pred             eeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         223 HFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                          ....+..++.+|.+.|.+++|.-+...|++.+.|
T Consensus       584 ----s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D  617 (626)
T KOG2106|consen  584 ----SPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKD  617 (626)
T ss_pred             ----CCcccceeeccccceeEEEEEeeCCceEEecCCC
Confidence                1234456778899999999999988888887776

>KOG2919|consensus

Probab=99.88  E-value=8e-21  Score=134.98  Aligned_cols=221  Identities=17%  Similarity=0.226  Sum_probs=164.7

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeec--cccc---eeEEEEeeCCCEEEEEeCCCcEEEEEc-cccceeeee--e
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRS--HLGV---IHSICTNYNGTLLCTVASDKAMKVFDV-INFDMINMI--K   85 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~---v~~~~~~~~~~~l~s~~~dg~v~~wd~-~~~~~~~~~--~   85 (261)
                      ..++++.+.+.-|++||.-++  +....+++  |...   -.+++|+|||.+|++| ..+.|+++|+ +.|..-..+  .
T Consensus       123 t~l~a~ssr~~PIh~wdaftG--~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  123 TNLFAVSSRDQPIHLWDAFTG--KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             cceeeeccccCceeeeecccc--ccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence            468899999999999999988  44444443  4443   3689999999999875 5679999998 444322111  1


Q ss_pred             cc-----CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe-cCC
Q psy6859          86 LD-----FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QDS  159 (261)
Q Consensus        86 ~~-----~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d  159 (261)
                      .+     ...+.+..++|......++   |+...++-||.-..+.++..+-.  +...|+.+.|.+++..  +.+| -.+
T Consensus       200 ~~~k~gq~giisc~a~sP~~~~~~a~---gsY~q~~giy~~~~~~pl~llgg--h~gGvThL~~~edGn~--lfsGaRk~  272 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDSKTLAV---GSYGQRVGIYNDDGRRPLQLLGG--HGGGVTHLQWCEDGNK--LFSGARKD  272 (406)
T ss_pred             hcccccccceeeeeeccCCCCcceee---ecccceeeeEecCCCCceeeecc--cCCCeeeEEeccCcCe--ecccccCC
Confidence            11     2234556666765544333   47888999999888888887764  5668999999999986  4454 447


Q ss_pred             CeEEEEEccCCCccceeeccCccc-CeEEE--EEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTK-PVVLI--KFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~-~v~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      -.|..||+|....++..+. .|.. .-..|  ...|++++|++|+.||.|++||++.              .+..+..+.
T Consensus       273 dkIl~WDiR~~~~pv~~L~-rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~--------------~gn~~sv~~  337 (406)
T KOG2919|consen  273 DKILCWDIRYSRDPVYALE-RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD--------------LGNEVSVTG  337 (406)
T ss_pred             CeEEEEeehhccchhhhhh-hhccCccceEEEecCCCCceeeccCCCccEEEEecCC--------------CCCcccccc
Confidence            8899999997778888887 5544 22334  5568999999999999999999953              255666777


Q ss_pred             CCccceeeeeECCCCceEEEeec
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      .|...++.++++|--.++|+++.
T Consensus       338 ~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  338 NYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             cccccccceecCcccceeeeccC
Confidence            79999999999999888888764

>KOG1007|consensus

Probab=99.88  E-value=4.9e-21  Score=134.07  Aligned_cols=222  Identities=14%  Similarity=0.252  Sum_probs=162.4

Q ss_pred             eEEEec----CCCeEEEEeccCCceee-eEEeeccccceeEEEEee-CCCEEEEEeCC-------CcEEEEEccccc---
Q psy6859          16 FVITAS----NDGHIKFWKKQEEGIEF-VKHFRSHLGVIHSICTNY-NGTLLCTVASD-------KAMKVFDVINFD---   79 (261)
Q Consensus        16 ~l~s~~----~d~~i~iw~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d-------g~v~~wd~~~~~---   79 (261)
                      .+++|.    .|+.|.+.+++..+... ...|..|.+.|..++-+| +.+.|+++-.+       -.+.||.+....   
T Consensus        28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S  107 (370)
T KOG1007|consen   28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS  107 (370)
T ss_pred             EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence            345553    46888888887643233 345677889999999999 45566665442       246799886432   


Q ss_pred             ------eeeeee-ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce-eeEEeecC---CcceEEEEEEeC--
Q psy6859          80 ------MINMIK-LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM-INMIKLDF---TPLTVECIHYLG--  146 (261)
Q Consensus        80 ------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~~~---~~~~~~~~~~~~--  146 (261)
                            ++..+. .....+.++.+.|++..++++     .|..|.+|++..... ...+....   ......+-+|+|  
T Consensus       108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm-----~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH  182 (370)
T KOG1007|consen  108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASM-----DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH  182 (370)
T ss_pred             ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-----ccCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence                  222222 122246788888999988887     599999999997755 33332221   233556667777  


Q ss_pred             CCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCeeeeee
Q psy6859         147 DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVHFE  225 (261)
Q Consensus       147 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  225 (261)
                      ++..  +++ ..|+++..||+| +.+....++.+|...|..+.|+|+.+ +|++++.||.|++||.+             
T Consensus       183 dgnq--v~t-t~d~tl~~~D~R-T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R-------------  245 (370)
T KOG1007|consen  183 DGNQ--VAT-TSDSTLQFWDLR-TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR-------------  245 (370)
T ss_pred             ccce--EEE-eCCCcEEEEEcc-chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc-------------
Confidence            3442  444 458999999999 88888888778999999999999988 67999999999999997             


Q ss_pred             cccccceeecCCCccceeeeeECCC-CceEEEeecC
Q psy6859         226 SKLDTDLFEFAKNKTYPSGLSFSPD-GNKFVTISMD  260 (261)
Q Consensus       226 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~D  260 (261)
                       ++..+++++.+|..+|+++.|+|. .++|+++|.|
T Consensus       246 -~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD  280 (370)
T KOG1007|consen  246 -KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD  280 (370)
T ss_pred             -CCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence             557889999999999999999994 4677788877

>KOG1538|consensus

Probab=99.88  E-value=9e-21  Score=146.89  Aligned_cols=231  Identities=11%  Similarity=0.086  Sum_probs=174.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||++.|+|++|+. |+.+|+|+.|..|.+|...-.   -+..+ .|.+.|.|+.|+|-...|++++-. ..-+|......
T Consensus        51 gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~  125 (1081)
T KOG1538|consen   51 GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS  125 (1081)
T ss_pred             cccceEEEEEEccCCceeccCCCceeEEEeccccc---ceeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh
Confidence            7999999999999 999999999999999986543   22333 499999999999998899998865 57789876543


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCC---CceEEEEe
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDA---IPTAAVSD  156 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  156 (261)
                      ..+ .+ ......++.+..+|..++..    -.+|+|.+-+-...+....-........|.+++|+|..   ..-+++..
T Consensus       126 V~K-~k-ss~R~~~CsWtnDGqylalG----~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~  199 (1081)
T KOG1538|consen  126 VSK-HK-SSSRIICCSWTNDGQYLALG----MFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA  199 (1081)
T ss_pred             HHh-hh-hheeEEEeeecCCCcEEEEe----ccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence            322 22 12345667777888877766    78999999875544433333333345688999998763   22345666


Q ss_pred             cCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         157 QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       157 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      ....++.+|.+.  ++.+..-+ ..+-...++.+.|+|.++..|+.|+.+++|-.                .+-.+.++.
T Consensus       200 DW~qTLSFy~Ls--G~~Igk~r-~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR----------------~GvrLGTvg  260 (1081)
T KOG1538|consen  200 DWGQTLSFYQLS--GKQIGKDR-ALNFDPCCISYFTNGEYILLGGSDKQLSLFTR----------------DGVRLGTVG  260 (1081)
T ss_pred             eccceeEEEEec--ceeecccc-cCCCCchhheeccCCcEEEEccCCCceEEEee----------------cCeEEeecc
Confidence            677788888874  44444332 34455678999999999999999999999974                356667777


Q ss_pred             CCccceeeeeECCCCceEEEeecCC
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ....+|+.++..|++++++.|+.||
T Consensus       261 ~~D~WIWtV~~~PNsQ~v~~GCqDG  285 (1081)
T KOG1538|consen  261 EQDSWIWTVQAKPNSQYVVVGCQDG  285 (1081)
T ss_pred             ccceeEEEEEEccCCceEEEEEccC
Confidence            7788999999999999999999997

>KOG2445|consensus

Probab=99.88  E-value=5.6e-20  Score=129.77  Aligned_cols=205  Identities=16%  Similarity=0.221  Sum_probs=147.6

Q ss_pred             CCCCeEEEEEcC---CCeEEEecCCCeEEEEeccC-------CceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCc
Q psy6859           2 HRSPITHVVVTK---TDFVITASNDGHIKFWKKQE-------EGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKA   69 (261)
Q Consensus         2 H~~~v~~~~~~~---~~~l~s~~~d~~i~iw~~~~-------~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~   69 (261)
                      |.+.|..|.|.+   |+.+|+++.|+++.||.-..       .......++....+.|+.++|.|  -|-.+++++.||.
T Consensus        58 h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~  137 (361)
T KOG2445|consen   58 HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI  137 (361)
T ss_pred             cCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcE
Confidence            889999999974   89999999999999997632       12334556677788999999998  4778999999999


Q ss_pred             EEEEEccccc------eeeeee-------ccCcceeEEEEeecC--CceeeeeeecCCC------CeEEEEEcCCC--ce
Q psy6859          70 MKVFDVINFD------MINMIK-------LDFTPLTVECIHYLG--DAIPTAAVSDQDS------SRVHIYDCKGN--DM  126 (261)
Q Consensus        70 v~~wd~~~~~------~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~s~~~d------~~i~i~d~~~~--~~  126 (261)
                      +|||+.-+.-      +..+++       .+..+..++.+.+..  ...+++    +.+      +.++||.....  +.
T Consensus       138 lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv----gs~e~a~~~~~~~Iye~~e~~rKw  213 (361)
T KOG2445|consen  138 LRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV----GSDEDAPHLNKVKIYEYNENGRKW  213 (361)
T ss_pred             EEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE----EcccCCccccceEEEEecCCccee
Confidence            9999865432      222222       122334444444321  223333    233      48888876543  34


Q ss_pred             eeEEeecCCcceEEEEEEeCCC--CceEEEEecCCCeEEEEEccCCC-------------------ccceeeccCcccCe
Q psy6859         127 INMIKLDFTPLTVECIHYLGDA--IPTAAVSDQDSSHVHIYDCKGNG-------------------TPLHVLDRLHTKPV  185 (261)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~-------------------~~~~~~~~~~~~~v  185 (261)
                      ...-++..+...|+.++|.|+.  .+.++++++.|| |+||.++...                   +.+..+. .|+..|
T Consensus       214 ~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~-~H~~~V  291 (361)
T KOG2445|consen  214 LKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD-DHNGEV  291 (361)
T ss_pred             eeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc-CCCCce
Confidence            4444555677789999999863  445688999999 9999987200                   2234454 899999


Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         186 VLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       186 ~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      ..+.|+-.|..|++.+.||.|++|...
T Consensus       292 Wrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  292 WRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEEEEeeeeeEEeecCCCceeeehhhh
Confidence            999999999999999999999999754

>KOG0321|consensus

Probab=99.87  E-value=9.7e-21  Score=145.40  Aligned_cols=234  Identities=14%  Similarity=0.161  Sum_probs=159.3

Q ss_pred             EEEcC----CCeEEEecCCCeEEEEeccCCcee----eeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           9 VVVTK----TDFVITASNDGHIKFWKKQEEGIE----FVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         9 ~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      ..|++    ..+|+.+.+||.|.++|......+    .+.....|.+.|..+.|.|....|++++.|.++++||+.+.++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            56664    358999999999999998764222    2345667999999999999778899999999999999998887


Q ss_pred             eee--eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCcee--------------------eEE-----eec
Q psy6859          81 INM--IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI--------------------NMI-----KLD  133 (261)
Q Consensus        81 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~--------------------~~~-----~~~  133 (261)
                      +..  +..+...+...++.+....++   ++|+.||.|.|||++-...-                    +.+     ...
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF---~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVF---CTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             ecceeecccccccchhhhccCCCcce---eeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence            765  556666667777777666443   45799999999999843310                    000     000


Q ss_pred             CCcceEEE---EEEeCCCCceEEEEecC-CCeEEEEEccCCCccce------eec-cCc---ccCeEEEEEcCCCCEEEE
Q psy6859         134 FTPLTVEC---IHYLGDAIPTAAVSDQD-SSHVHIYDCKGNGTPLH------VLD-RLH---TKPVVLIKFNPIYQVVVS  199 (261)
Q Consensus       134 ~~~~~~~~---~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~------~~~-~~~---~~~v~~~~~~~~~~~l~~  199 (261)
                      .....+..   +-+..|...  +++++. |+.|++||++ ......      ... ..|   ...+.++..+..|.+|++
T Consensus       212 A~s~ti~ssvTvv~fkDe~t--laSaga~D~~iKVWDLR-k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A  288 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLFKDEST--LASAGAADSTIKVWDLR-KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA  288 (720)
T ss_pred             cccCceeeeeEEEEEeccce--eeeccCCCcceEEEeec-ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence            11122332   334444443  666665 9999999999 432221      111 022   345777888888898877


Q ss_pred             EcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccc--eeeeeECCCCceEEEeecCC
Q psy6859         200 VDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTY--PSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       200 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+.|+.|.+|++..             ....++..+.++...  -..-..+||+.+|++|+.|.
T Consensus       289 sCtD~sIy~ynm~s-------------~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~  339 (720)
T KOG0321|consen  289 SCTDNSIYFYNMRS-------------LSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDE  339 (720)
T ss_pred             EecCCcEEEEeccc-------------cCcCchhhccCcccceeeeeeecCCCCceEeccCCCc
Confidence            77799999999975             233445555543321  12234689999999999874

>KOG1034|consensus

Probab=99.87  E-value=2e-21  Score=138.15  Aligned_cols=202  Identities=17%  Similarity=0.247  Sum_probs=142.1

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEe---eccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHF---RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      ||-..|+.|.+.|  .++++++|.|..|++|++++.  .++..+   .+|.+.|.++.|++++.+|++++.|.++++|++
T Consensus       133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l  210 (385)
T KOG1034|consen  133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRL  210 (385)
T ss_pred             ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEec
Confidence            7899999999999  579999999999999999987  777665   579999999999999999999999999999999


Q ss_pred             cccceeeeeecc----Cc-------------ce-eEEE--------EeecCCceeeeeeecCCCCeEEEEEc-CCCce--
Q psy6859          76 INFDMINMIKLD----FT-------------PL-TVEC--------IHYLGDAIPTAAVSDQDSSRVHIYDC-KGNDM--  126 (261)
Q Consensus        76 ~~~~~~~~~~~~----~~-------------~~-~~~~--------~~~~~~~~~~~~~s~~~d~~i~i~d~-~~~~~--  126 (261)
                      ...+....++..    ..             |. ....        +..-++.+++-    +-++.|..|.. +-++.  
T Consensus       211 ~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSk----scenaI~~w~pgkl~e~~~  286 (385)
T KOG1034|consen  211 NVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSK----SCENAIVCWKPGKLEESIH  286 (385)
T ss_pred             ChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeec----ccCceEEEEecchhhhhhh
Confidence            844322211100    00             00 0000        11124555554    78889999987 21111  


Q ss_pred             -----------eeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccc--eeec-cCcccCeEEEEEcC
Q psy6859         127 -----------INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPL--HVLD-RLHTKPVVLIKFNP  192 (261)
Q Consensus       127 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~-~~~~~~v~~~~~~~  192 (261)
                                 +..+..+.-......++|+|-...  ++.|...|.+.+||++ ...+.  .++. ......|...+|+.
T Consensus       287 ~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~--la~gnq~g~v~vwdL~-~~ep~~~ttl~~s~~~~tVRQ~sfS~  363 (385)
T KOG1034|consen  287 NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM--LALGNQSGKVYVWDLD-NNEPPKCTTLTHSKSGSTVRQTSFSR  363 (385)
T ss_pred             ccCCCccceeeeeEeccCccceEEEEEeecHHHHH--HhhccCCCcEEEEECC-CCCCccCceEEeccccceeeeeeecc
Confidence                       122222222223344455565554  8889999999999999 54442  2221 12356789999999


Q ss_pred             CCCEEEEEcCCCeEEEeec
Q psy6859         193 IYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       193 ~~~~l~~~~~dg~i~iwd~  211 (261)
                      |+.+|+....|++|.-||.
T Consensus       364 dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  364 DGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             cCcEEEEEeCCCcEEEEEe
Confidence            9999999999999999985

>KOG4328|consensus

Probab=99.87  E-value=8.4e-21  Score=140.36  Aligned_cols=207  Identities=13%  Similarity=0.209  Sum_probs=156.8

Q ss_pred             eeeEEeeccccceeEEEEeeCC--CEEEEEeCCCcEEEEEcccc----ceeeeeeccCcceeEEEEeec-CCceeeeeee
Q psy6859          37 EFVKHFRSHLGVIHSICTNYNG--TLLCTVASDKAMKVFDVINF----DMINMIKLDFTPLTVECIHYL-GDAIPTAAVS  109 (261)
Q Consensus        37 ~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~v~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s  109 (261)
                      .....++-+...|++++|+|..  +.+++|+.-|+|-+||+.+.    .-+..+..+..++..+.++|. ...+++.   
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss---  253 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS---  253 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee---
Confidence            4445566688999999999944  57888899999999999522    234445567777888888774 4555555   


Q ss_pred             cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEE
Q psy6859         110 DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIK  189 (261)
Q Consensus       110 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~  189 (261)
                       +.||+|++-|+++......+........+..+.|+.+...  ++.+..=|.+.+||++..+.....+. .|+..|++++
T Consensus       254 -SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~--vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~  329 (498)
T KOG4328|consen  254 -SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRS--VLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVA  329 (498)
T ss_pred             -ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCcc--EEEeecccceEEEEeecCCccchhhh-hhhcccceee
Confidence             9999999999998765555555445557778888877765  55666677999999995556577776 8889999999


Q ss_pred             EcCCCC-EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         190 FNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       190 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++|... +||+++.|++.+|||++.-.-          + ..++-....|...|.+..|||++-.|++.+.|.
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~----------K-~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~  391 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRG----------K-ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN  391 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcC----------C-CCcceecccccceeeeeEEcCCCCceEeeccCC
Confidence            999776 779999999999999975210          1 112344456999999999999887799888774

>KOG0642|consensus

Probab=99.87  E-value=2.6e-21  Score=146.44  Aligned_cols=204  Identities=14%  Similarity=0.171  Sum_probs=149.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCC--------ceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEE--------GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMK   71 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~   71 (261)
                      +|.++|.|+++.+ ++.+++|+.||+|+.|++...        .......+.||.+.|+.+++++....|++++.||+++
T Consensus       342 aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr  421 (577)
T KOG0642|consen  342 AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVR  421 (577)
T ss_pred             cccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEE
Confidence            6999999999999 899999999999999966421        1134567889999999999999888999999999999


Q ss_pred             EEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEc---CCCceeeEEeecCCc-----ceEEEEE
Q psy6859          72 VFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC---KGNDMINMIKLDFTP-----LTVECIH  143 (261)
Q Consensus        72 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~---~~~~~~~~~~~~~~~-----~~~~~~~  143 (261)
                      +|+...... ..+........-..+..........    ..+.....+++   .....+..+.....+     ..+..+.
T Consensus       422 ~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~----~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV  496 (577)
T KOG0642|consen  422 LWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHS----LASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV  496 (577)
T ss_pred             eeccCCcCc-cccCCccccCCcceEeeccchhHhh----hhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence            999876655 3333322222222333222222222    12334444443   333333333222111     2466777


Q ss_pred             EeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         144 YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .+|...  +.+++..|+.|+++|.. +++++.... .|...++++++.|+|.+|++++.|+.+++|.+..
T Consensus       497 s~~~~~--~~~~~hed~~Ir~~dn~-~~~~l~s~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  497 SHPTAD--ITFTAHEDRSIRFFDNK-TGKILHSMV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             ecCCCC--eeEecccCCceeccccc-ccccchhee-eccceecceeecCCCceEEeecCCceeehhhccc
Confidence            778875  37888999999999999 999999998 9999999999999999999999999999999843

>KOG0771|consensus

Probab=99.87  E-value=1.1e-20  Score=138.49  Aligned_cols=201  Identities=14%  Similarity=0.080  Sum_probs=149.1

Q ss_pred             EEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeee
Q psy6859           7 THVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIK   85 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~   85 (261)
                      .+++|++ |..+++|+.||++|||+....  ..+.....|.+.|.++.|+||++.|++-+.| ..+||+.+++..+....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            5789999 899999999999999997765  5666677799999999999999999999999 99999999996655544


Q ss_pred             ccCc--ceeEEEEeecCC-ceeeeeeecCCCCeEEEEEcCCCce---eeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          86 LDFT--PLTVECIHYLGD-AIPTAAVSDQDSSRVHIYDCKGNDM---INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        86 ~~~~--~~~~~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ....  ....+.+..++. ..+-++..-...+.|..||+.....   ++..+.-.....+.+++.++++++  ++.|+.|
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf--~AlGT~d  302 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF--LALGTMD  302 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE--EEEeccC
Confidence            2111  122233333221 1222222334556677766553321   111111112337899999999986  8888999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      |.|.|++.. +-+.++.++..|...|+.+.|+|+.+++++.+.|....+..+..
T Consensus       303 GsVai~~~~-~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  303 GSVAIYDAK-SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEEec-eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999998 77777777778999999999999999999999999999988753

>KOG0644|consensus

Probab=99.86  E-value=1.2e-21  Score=154.67  Aligned_cols=229  Identities=17%  Similarity=0.308  Sum_probs=171.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.+.|+|+.|.. +.++++|+.|..++||..++.  .+....+||.+.|+.++.+.++.++++++.|..|++|.+.++.
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence            7999999999999 999999999999999998887  8899999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce--------------eeEEeec------------
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM--------------INMIKLD------------  133 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~--------------~~~~~~~------------  133 (261)
                      ++..+..+...++.+.++|-.    +.    +.||++++||.+-.-.              ...+...            
T Consensus       266 pvsvLrghtgavtaiafsP~~----ss----s~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  266 PVSVLRGHTGAVTAIAFSPRA----SS----SDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             hHHHHhccccceeeeccCccc----cC----CCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence            999998888778877777644    22    7899999999871100              0000000            


Q ss_pred             ------------CCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE-EEE
Q psy6859         134 ------------FTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSV  200 (261)
Q Consensus       134 ------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~  200 (261)
                                  .+...+.-+.++.+.. .+.+++-.+-.+.+|++. ++.+++.+. +|...+..+.++|-...+ .++
T Consensus       338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vwnl~-~g~l~H~l~-ghsd~~yvLd~Hpfn~ri~msa  414 (1113)
T KOG0644|consen  338 GEARNHEFEQLAWRSNLLIFVTRSSDLS-SIVVTARNDHRLCVWNLY-TGQLLHNLM-GHSDEVYVLDVHPFNPRIAMSA  414 (1113)
T ss_pred             cccccchhhHhhhhccceEEEecccccc-ccceeeeeeeEeeeeecc-cchhhhhhc-ccccceeeeeecCCCcHhhhhc
Confidence                        0000111111111111 113344456678889998 888888887 999999999999977654 788


Q ss_pred             cCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEe
Q psy6859         201 DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       201 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  257 (261)
                      +.||...|||+-.               +.+++.+..-...+..-+||+||..++..
T Consensus       415 g~dgst~iwdi~e---------------g~pik~y~~gh~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  415 GYDGSTIIWDIWE---------------GIPIKHYFIGHGKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             cCCCceEeeeccc---------------CCcceeeecccceeeccccCCCCceEecC
Confidence            9999999999854               33443333224566678999998877643

>KOG1524|consensus

Probab=99.86  E-value=4.4e-20  Score=139.57  Aligned_cols=203  Identities=16%  Similarity=0.157  Sum_probs=161.0

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEE
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVE   94 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   94 (261)
                      +.++.++.||.+.+.+-..   +..+.+..|.+.+.+-.|+|||.-|++++.||.|++|. ++|-+..++.....++.+.
T Consensus        76 d~~~i~s~DGkf~il~k~~---rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSA---RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA  151 (737)
T ss_pred             ceEEEEcCCceEEEecccc---hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence            4688889999999977543   56677889999999999999999999999999999999 4666666666667788899


Q ss_pred             EEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccc
Q psy6859          95 CIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPL  174 (261)
Q Consensus        95 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  174 (261)
                      .+.|+.+.++.+     ..+.+.|=-+.....  .++...+.+-+.++.|++....  +++|++|-..++||-.  +.++
T Consensus       152 ~W~p~S~~vl~c-----~g~h~~IKpL~~n~k--~i~WkAHDGiiL~~~W~~~s~l--I~sgGED~kfKvWD~~--G~~L  220 (737)
T KOG1524|consen  152 RWAPNSNSIVFC-----QGGHISIKPLAANSK--IIRWRAHDGLVLSLSWSTQSNI--IASGGEDFRFKIWDAQ--GANL  220 (737)
T ss_pred             EECCCCCceEEe-----cCCeEEEeecccccc--eeEEeccCcEEEEeecCccccc--eeecCCceeEEeeccc--Cccc
Confidence            999988877765     567777766665433  3444457789999999999864  9999999999999984  6777


Q ss_pred             eeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceE
Q psy6859         175 HVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF  254 (261)
Q Consensus       175 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  254 (261)
                      ..-. .|+.+|++++|+|+ +.++.++.+ ++++=                          +...+.|..++|||||..+
T Consensus       221 f~S~-~~ey~ITSva~npd-~~~~v~S~n-t~R~~--------------------------~p~~GSifnlsWS~DGTQ~  271 (737)
T KOG1524|consen  221 FTSA-AEEYAITSVAFNPE-KDYLLWSYN-TARFS--------------------------SPRVGSIFNLSWSADGTQA  271 (737)
T ss_pred             ccCC-hhccceeeeeeccc-cceeeeeee-eeeec--------------------------CCCccceEEEEEcCCCcee
Confidence            7776 89999999999999 555655532 33311                          2246789999999999999


Q ss_pred             EEeecCC
Q psy6859         255 VTISMDR  261 (261)
Q Consensus       255 ~s~~~Dg  261 (261)
                      +.|...|
T Consensus       272 a~gt~~G  278 (737)
T KOG1524|consen  272 TCGTSTG  278 (737)
T ss_pred             eccccCc
Confidence            9887654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=6.4e-18  Score=133.50  Aligned_cols=235  Identities=18%  Similarity=0.328  Sum_probs=182.8

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecccc-ceeEEEE-eeCCC-EEEEEeC-CCcEEEEEc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLG-VIHSICT-NYNGT-LLCTVAS-DKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~v~~~~~-~~~~~-~l~s~~~-dg~v~~wd~   75 (261)
                      +|...+.++.+.+ +..++.++.|+.+.+|+..... .....+..+.. .+..+.+ .+++. +++..+. |+.+.+|+.
T Consensus        63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  141 (466)
T COG2319          63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL  141 (466)
T ss_pred             eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence            4788999999999 8889999999999999998762 25666665443 6777777 77777 5555444 999999999


Q ss_pred             cc-cceeeeeeccCcceeEEEEeecCCceeeeeeecCC-CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859          76 IN-FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
                      .. ......+..+...+..+.+.+++..++..    +. ++.+++|++.....+..+..  +...+.+++++|++. .++
T Consensus       142 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~-~~~  214 (466)
T COG2319         142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASG----SSLDGTIKLWDLRTGKPLSTLAG--HTDPVSSLAFSPDGG-LLI  214 (466)
T ss_pred             cCCCeEEEEEecCcccEEEEEECCCCCEEEec----CCCCCceEEEEcCCCceEEeecc--CCCceEEEEEcCCcc-eEE
Confidence            87 67777777777777788888888744443    54 99999999998777777765  455789999998886 235


Q ss_pred             EEecCCCeEEEEEccCCCccce-eeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce
Q psy6859         154 VSDQDSSHVHIYDCKGNGTPLH-VLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL  232 (261)
Q Consensus       154 ~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  232 (261)
                      ++++.|+.+++||.. .+..+. .+. .|.... ...|+|++.++++++.|+.+++|++...              ...+
T Consensus       215 ~~~~~d~~i~~wd~~-~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------------~~~~  277 (466)
T COG2319         215 ASGSSDGTIRLWDLS-TGKLLRSTLS-GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS--------------SSLL  277 (466)
T ss_pred             EEecCCCcEEEEECC-CCcEEeeecC-CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC--------------CcEE
Confidence            666889999999988 777776 565 777765 3489999988899999999999998642              1123


Q ss_pred             eecCCCccceeeeeECCCCceEEEeecC
Q psy6859         233 FEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       233 ~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      ..+.+|...+.++.|+|++..+++++.|
T Consensus       278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~d  305 (466)
T COG2319         278 RTLSGHSSSVLSVAFSPDGKLLASGSSD  305 (466)
T ss_pred             EEEecCCccEEEEEECCCCCEEEEeeCC
Confidence            3336688999999999998888887766

>KOG0649|consensus

Probab=99.85  E-value=7.9e-19  Score=120.36  Aligned_cols=192  Identities=11%  Similarity=0.091  Sum_probs=142.1

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccC--------CceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQE--------EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      .|.+-+++| +++|++|..+|.|.+..+.+        .+...+...++|.++|+.++|..+  +|++|+ ||.|+=|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeecc-CceEEEeee
Confidence            345567899 99999999999999998754        123455566899999999999844  777765 599999987


Q ss_pred             cccce------eeeee-------ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEE
Q psy6859          76 INFDM------INMIK-------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECI  142 (261)
Q Consensus        76 ~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  142 (261)
                      +....      +.+.+       .+...+..+++.|..+.++.+    +.|+.++-||+++++..+.++.+  ...+.++
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A----gGD~~~y~~dlE~G~i~r~~rGH--tDYvH~v  162 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA----GGDGVIYQVDLEDGRIQREYRGH--TDYVHSV  162 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe----cCCeEEEEEEecCCEEEEEEcCC--cceeeee
Confidence            64322      11111       122346778888887777766    79999999999999999998875  4577888


Q ss_pred             EE-eCCCCceEEEEecCCCeEEEEEccCCCccceeeccCc----------ccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         143 HY-LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLH----------TKPVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       143 ~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      .- +..+.   +++|++||++++||.+ +++.+..++ ..          ...|.+++-  +..+|+.|+. ..+.+|.+
T Consensus       163 v~R~~~~q---ilsG~EDGtvRvWd~k-t~k~v~~ie-~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhL  234 (325)
T KOG0649|consen  163 VGRNANGQ---ILSGAEDGTVRVWDTK-TQKHVSMIE-PYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHL  234 (325)
T ss_pred             eecccCcc---eeecCCCccEEEEecc-ccceeEEec-cccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEec
Confidence            76 44444   8999999999999999 998888875 21          223444444  5568887764 45999999


Q ss_pred             cc
Q psy6859         212 YK  213 (261)
Q Consensus       212 ~~  213 (261)
                      +.
T Consensus       235 rs  236 (325)
T KOG0649|consen  235 RS  236 (325)
T ss_pred             cC
Confidence            75

>KOG1538|consensus

Probab=99.85  E-value=1e-19  Score=141.16  Aligned_cols=223  Identities=11%  Similarity=0.163  Sum_probs=171.2

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM   83 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~   83 (261)
                      .|..++|-| |..|+.+.. ..+.+||+.++  ..+.++++|.+.|.+++|+.||+.+++|+.|..|.+|...-.- +..
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG--~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILK   89 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCc--ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eee
Confidence            789999999 776666553 57889999988  7899999999999999999999999999999999999964322 222


Q ss_pred             eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEE
Q psy6859          84 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVH  163 (261)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  163 (261)
                      +. +...+.++.+.|-...++++     .=...-+|........+.    ....++.+.+|..|+.+  ++-|-.+|+|.
T Consensus        90 YS-H~D~IQCMsFNP~~h~LasC-----sLsdFglWS~~qK~V~K~----kss~R~~~CsWtnDGqy--lalG~~nGTIs  157 (1081)
T KOG1538|consen   90 YS-HNDAIQCMSFNPITHQLASC-----SLSDFGLWSPEQKSVSKH----KSSSRIICCSWTNDGQY--LALGMFNGTIS  157 (1081)
T ss_pred             ec-cCCeeeEeecCchHHHhhhc-----chhhccccChhhhhHHhh----hhheeEEEeeecCCCcE--EEEeccCceEE
Confidence            22 55668888998888877776     334567888765533221    13447899999999987  88888899999


Q ss_pred             EEEccCCCccceeec--cCcccCeEEEEEcCCC-----CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         164 IYDCKGNGTPLHVLD--RLHTKPVVLIKFNPIY-----QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       164 i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      +-+-  ++++...++  .+.+.+|.+++|+|..     ..+++.....++.++.+.                ++.+..-+
T Consensus       158 iRNk--~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls----------------G~~Igk~r  219 (1081)
T KOG1538|consen  158 IRNK--NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS----------------GKQIGKDR  219 (1081)
T ss_pred             eecC--CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec----------------ceeecccc
Confidence            9875  455544444  3578899999999964     377888888888888874                44444333


Q ss_pred             CCccceeeeeECCCCceEEEeecCC
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .-.-...++.+-|+|.+++.||.|+
T Consensus       220 ~L~FdP~CisYf~NGEy~LiGGsdk  244 (1081)
T KOG1538|consen  220 ALNFDPCCISYFTNGEYILLGGSDK  244 (1081)
T ss_pred             cCCCCchhheeccCCcEEEEccCCC
Confidence            3444567899999999999999886

>KOG0771|consensus

Probab=99.85  E-value=3.7e-20  Score=135.68  Aligned_cols=190  Identities=13%  Similarity=0.095  Sum_probs=145.3

Q ss_pred             eEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE
Q psy6859          50 HSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM  129 (261)
Q Consensus        50 ~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  129 (261)
                      ..++|+.+|..+++++.||++|+|+..+.+.+.....+...+..+.++++++.++++    +.| ..++|+.+++..+..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasi----g~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASI----GAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEe----cCC-ceEEEEeccCchhhh
Confidence            678999999999999999999999987777777766677788899999999999998    788 999999999977777


Q ss_pred             EeecCCcceEEEEEEeCCC---CceEEEEecCCCeEEEEEccCCCc----cceeeccCcccCeEEEEEcCCCCEEEEEcC
Q psy6859         130 IKLDFTPLTVECIHYLGDA---IPTAAVSDQDSSHVHIYDCKGNGT----PLHVLDRLHTKPVVLIKFNPIYQVVVSVDK  202 (261)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  202 (261)
                      ......+.....+.|..+.   ...+++....-+.|+.||+.-...    +.++.. .....|++++.+++|+++|.|+.
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEEecc
Confidence            6644455566677777655   333344444455677766641111    122221 34557999999999999999999


Q ss_pred             CCeEEEeecccccccCCeeeeeecccccce-eecCCCccceeeeeECCCCceEEEeecC
Q psy6859         203 AGILEYWSGYKQEFKFPKCVHFESKLDTDL-FEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       203 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      ||.|.|++..+               -+.+ ..-+.|...|+.+.|+||.+++++-+.|
T Consensus       302 dGsVai~~~~~---------------lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~  345 (398)
T KOG0771|consen  302 DGSVAIYDAKS---------------LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSD  345 (398)
T ss_pred             CCcEEEEEece---------------eeeeEeehhhheeeeeeEEEcCCcCcccccccC
Confidence            99999999842               3333 3445699999999999999999887765

>KOG2111|consensus

Probab=99.85  E-value=1.4e-17  Score=118.28  Aligned_cols=228  Identities=14%  Similarity=0.200  Sum_probs=162.2

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc-ccceeeeeeccCcceeEEEEeecCCc
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI-NFDMINMIKLDFTPLTVECIHYLGDA  102 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (261)
                      +.+.|||=...  .++.++. ...+|.++.+.++  .|++. ..+.|.+|... +.+.+..+.....|...+.+.+..+.
T Consensus        75 NkviIWDD~k~--~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k  148 (346)
T KOG2111|consen   75 NKVIIWDDLKE--RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK  148 (346)
T ss_pred             ceEEEEecccC--cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence            47999994433  6666666 5689999999887  66665 45689999998 56777777766666667777665543


Q ss_pred             eeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe-EEEEEccCCCccceeecc-C
Q psy6859         103 IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH-VHIYDCKGNGTPLHVLDR-L  180 (261)
Q Consensus       103 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~~~~~~-~  180 (261)
                      - .+++-|-.-|.|.|-|+...+.-.......|...|.|++.+-+|.  ++++++..|+ |+|||.. ++.++.++.. .
T Consensus       149 ~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~-~g~~l~E~RRG~  224 (346)
T KOG2111|consen  149 S-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--LVATASTKGTLIRIFDTE-DGTLLQELRRGV  224 (346)
T ss_pred             e-EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcC-CCcEeeeeecCC
Confidence            3 334556778999999998776532333334666899999999996  4999999998 8999999 9999999973 3


Q ss_pred             cccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC--eeee-------eecccccceeecCCCccceeeeeECCCC
Q psy6859         181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP--KCVH-------FESKLDTDLFEFAKNKTYPSGLSFSPDG  251 (261)
Q Consensus       181 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~~~  251 (261)
                      ..+.|.+|+|||+..+||+++..|+++||.++.......  ....       ....+...+..+.-..+...-++|-.+.
T Consensus       225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~  304 (346)
T KOG2111|consen  225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSET  304 (346)
T ss_pred             chheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCC
Confidence            467899999999999999999999999999976432222  1100       0011122223333345566677887775


Q ss_pred             ceEEEeecCC
Q psy6859         252 NKFVTISMDR  261 (261)
Q Consensus       252 ~~l~s~~~Dg  261 (261)
                      +.++..+.||
T Consensus       305 nsvi~i~~Dg  314 (346)
T KOG2111|consen  305 NTVIAICADG  314 (346)
T ss_pred             CeEEEEEeCC
Confidence            6666666665

>KOG0650|consensus

Probab=99.84  E-value=3.2e-19  Score=136.42  Aligned_cols=200  Identities=15%  Similarity=0.169  Sum_probs=159.2

Q ss_pred             ccccceeEEEEeeCCCEEEEEeCC---CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEE
Q psy6859          44 SHLGVIHSICTNYNGTLLCTVASD---KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD  120 (261)
Q Consensus        44 ~~~~~v~~~~~~~~~~~l~s~~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d  120 (261)
                      .|...|..+.|+..|.||++...+   ..|.|+++........|+.....+..+.|++....++.+     .-..|+|||
T Consensus       519 ~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-----Tq~~vRiYd  593 (733)
T KOG0650|consen  519 KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-----TQRSVRIYD  593 (733)
T ss_pred             ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-----eccceEEEe
Confidence            377899999999999999998754   468899998776666665555556677788777666654     678999999


Q ss_pred             cCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE
Q psy6859         121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV  200 (261)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  200 (261)
                      +..++.++.+..  ....+..++.+|.|..  ++.|+.|+.+..||+....++.+++. .|...+++++|++.-.++++|
T Consensus       594 L~kqelvKkL~t--g~kwiS~msihp~GDn--li~gs~d~k~~WfDldlsskPyk~lr-~H~~avr~Va~H~ryPLfas~  668 (733)
T KOG0650|consen  594 LSKQELVKKLLT--GSKWISSMSIHPNGDN--LILGSYDKKMCWFDLDLSSKPYKTLR-LHEKAVRSVAFHKRYPLFASG  668 (733)
T ss_pred             hhHHHHHHHHhc--CCeeeeeeeecCCCCe--EEEecCCCeeEEEEcccCcchhHHhh-hhhhhhhhhhhccccceeeee
Confidence            998777666554  2347788999998776  88899999999999997778999998 999999999999999999999


Q ss_pred             cCCCeEEEeecc--cccccCCeeeeeecccccceeecCCCccc----eeeeeECCCCceEEEeecCC
Q psy6859         201 DKAGILEYWSGY--KQEFKFPKCVHFESKLDTDLFEFAKNKTY----PSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       201 ~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +.||++.|+.-.  +...+.        ..--++..+.+|...    |..+.|+|...+|++++.||
T Consensus       669 sdDgtv~Vfhg~VY~Dl~qn--------pliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~  727 (733)
T KOG0650|consen  669 SDDGTVIVFHGMVYNDLLQN--------PLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG  727 (733)
T ss_pred             cCCCcEEEEeeeeehhhhcC--------CceEeeeeccCceeecccceEeecccCCCceEEecCCCc
Confidence            999999988532  111111        113456778888766    89999999999999999986

>KOG0307|consensus

Probab=99.84  E-value=2.1e-20  Score=152.15  Aligned_cols=206  Identities=12%  Similarity=0.134  Sum_probs=159.2

Q ss_pred             CCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEe--eccccceeEEEEee-CCCEEEEEeCCCcEEEEEcc
Q psy6859           2 HRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHF--RSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         2 H~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~   76 (261)
                      |++.|..+.|++  +++||+|+.||.|.|||+....  .-..+  ....+.|.+++|+. ....|++++.+|.+.|||++
T Consensus       115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr  192 (1049)
T KOG0307|consen  115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR  192 (1049)
T ss_pred             cCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence            899999999999  6699999999999999998742  11222  22457899999986 45578888999999999999


Q ss_pred             ccceeeeeeccCc--ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859          77 NFDMINMIKLDFT--PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        77 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
                      ..+.+..+.....  ....+.++|+...-+.++---...-.|.+||+|.- .+++.++.  |...+.++.|++.+.. ++
T Consensus       193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~GilslsWc~~D~~-ll  269 (1049)
T KOG0307|consen  193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSLSWCPQDPR-LL  269 (1049)
T ss_pred             CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeeeccCCCCch-hh
Confidence            8877776664433  24466677765443333111122347999999854 45666654  4557899999998854 37


Q ss_pred             EEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccc
Q psy6859         154 VSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       154 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  214 (261)
                      ++++.|+.|.+|+.. +++.+..+. ....++..+.|+|... .++.++.||.|.||.+...
T Consensus       270 lSsgkD~~ii~wN~~-tgEvl~~~p-~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  270 LSSGKDNRIICWNPN-TGEVLGELP-AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             hcccCCCCeeEecCC-CceEeeecC-CCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            888899999999999 999999997 7788999999999877 7788999999999998764

>KOG1273|consensus

Probab=99.84  E-value=9.1e-19  Score=124.28  Aligned_cols=187  Identities=13%  Similarity=0.155  Sum_probs=151.0

Q ss_pred             eeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee
Q psy6859          49 IHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN  128 (261)
Q Consensus        49 v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~  128 (261)
                      -.++.|++.|.+||+|+.||.|.|||+.+....+.+..|..|+++++++++|+.+++.    +.|..|.+||+..+.+++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~Llts----S~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTS----SRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeee----cCCceeEEEeccCCCcee
Confidence            6899999999999999999999999999999888899999999999999999999888    999999999999999999


Q ss_pred             EEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceee-ccC----cccCeEEEEEcCCCCEEEEEcCC
Q psy6859         129 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVL-DRL----HTKPVVLIKFNPIYQVVVSVDKA  203 (261)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d  203 (261)
                      .+...   .+|....|+|.....++++-- +..-.+-++. .  +++.+ ...    .+.......|.+.|+++++|...
T Consensus       102 rirf~---spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s-~--~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK  174 (405)
T KOG1273|consen  102 RIRFD---SPVWGAQWHPRKRNKCVATIM-EESPVVIDFS-D--PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK  174 (405)
T ss_pred             EEEcc---CccceeeeccccCCeEEEEEe-cCCcEEEEec-C--CceeeccCCCccccccccccccccCCCCEEEEecCc
Confidence            98864   478999999988776566544 4445666665 2  22222 101    11122233689999999999999


Q ss_pred             CeEEEeecccccccCCeeeeeecccccceeecCCCc-cceeeeeECCCCceEEEeecCC
Q psy6859         204 GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK-TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       204 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |.+.++|..+               .+++..++-.. ..|.++.|+..|+.|+.-+.|+
T Consensus       175 Gkllv~~a~t---------------~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR  218 (405)
T KOG1273|consen  175 GKLLVYDAET---------------LECVASFRITSVQAIKQIIVSRKGRFLIINTSDR  218 (405)
T ss_pred             ceEEEEecch---------------heeeeeeeechheeeeEEEEeccCcEEEEecCCc
Confidence            9999999843               56776666544 7889999999999999988774

>KOG0303|consensus

Probab=99.83  E-value=5.5e-19  Score=128.79  Aligned_cols=185  Identities=21%  Similarity=0.303  Sum_probs=137.1

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ||+..|.-++|+|  .+.|++++.|.+|.+|++.++  +.+.++. |.+.|.++.|+.||.+|++.+.|..|||||.+++
T Consensus       129 gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg--eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~  205 (472)
T KOG0303|consen  129 GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG--EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG  205 (472)
T ss_pred             ecceeEEEEeecccchhhHhhccCCceEEEEeccCC--ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC
Confidence            8999999999999  789999999999999999998  6666777 9999999999999999999999999999999999


Q ss_pred             ceeeeeeccCc--ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          79 DMINMIKLDFT--PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        79 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      +.+.+-..+..  +...+++ .++. +++..|+--.+.++.+||..+-+ ++...+.. ....+.---|.++.. .+.++
T Consensus       206 ~~v~e~~~heG~k~~Raifl-~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~-ivYl~  281 (472)
T KOG0303|consen  206 TVVSEGVAHEGAKPARAIFL-ASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTS-IVYLC  281 (472)
T ss_pred             cEeeecccccCCCcceeEEe-ccCc-eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCC-EEEEE
Confidence            98887644432  2333333 3444 77777888889999999987653 33333333 233444444566655 56788


Q ss_pred             ecCCCeEEEEEccCCCcc-ceeec-cCcccCeEEEEEcCC
Q psy6859         156 DQDSSHVHIYDCKGNGTP-LHVLD-RLHTKPVVLIKFNPI  193 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~-~~~~~-~~~~~~v~~~~~~~~  193 (261)
                      |-.|+.|+.|.+. ...+ ++-+. .....+-..+.|-|.
T Consensus       282 GKGD~~IRYyEit-~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  282 GKGDSSIRYFEIT-NEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             ecCCcceEEEEec-CCCceeEEecccccCCcccccccccc
Confidence            8889999999997 4432 33222 023344455666664

>KOG1310|consensus

Probab=99.83  E-value=2.7e-19  Score=135.71  Aligned_cols=208  Identities=13%  Similarity=0.155  Sum_probs=142.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEE-eeccccceeEEEEee--CCCEEEEEeCCCcEEEEEcc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKH-FRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~   76 (261)
                      ||++.|+|++|+. |.+|++|+.|-.+.|||.-..  +++.. -.+|...|.++.|-|  +++.+++|+.|..|+++|+.
T Consensus        48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~  125 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD  125 (758)
T ss_pred             cccceecceeecCCCCEEeecCCcceEEeecchhc--ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence            8999999999999 999999999999999998864  44444 368999999999998  56789999999999999997


Q ss_pred             ccc----------eeeeeeccCcceeEEEEeecC-CceeeeeeecCCCCeEEEEEcCCCceeeE--------EeecCCcc
Q psy6859          77 NFD----------MINMIKLDFTPLTVECIHYLG-DAIPTAAVSDQDSSRVHIYDCKGNDMINM--------IKLDFTPL  137 (261)
Q Consensus        77 ~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~i~i~d~~~~~~~~~--------~~~~~~~~  137 (261)
                      ..+          ....+..+...+.-+...+.+ +.++++    +.||+++-+|++.......        ........
T Consensus       126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa----sEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA----SEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe----cCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            422          122222233333333333443 444444    9999999999986321111        01111223


Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc-----------------cceeeccCcc--------c---CeEEEE
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT-----------------PLHVLDRLHT--------K---PVVLIK  189 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-----------------~~~~~~~~~~--------~---~v~~~~  189 (261)
                      ...|+..+|...+. ++.|+.|-..++||.+...+                 +++.+..+|-        .   .++-+.
T Consensus       202 elk~ltisp~rp~~-laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  202 ELKCLTISPSRPYY-LAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             eeeeeeecCCCCce-EEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            56788999988875 66677799999999541111                 1333321221        1   146679


Q ss_pred             EcCCCCEEEEEcCCCeEEEeeccccc
Q psy6859         190 FNPIYQVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       190 ~~~~~~~l~~~~~dg~i~iwd~~~~~  215 (261)
                      |+|+|..|+..-..-.|+++|+..++
T Consensus       281 fnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             ECCCCcEEEEeeCCeEEEEEeecCCC
Confidence            99999866555545579999997653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=1.8e-18  Score=136.22  Aligned_cols=217  Identities=11%  Similarity=0.033  Sum_probs=146.5

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCC---CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEE--E
Q psy6859           2 HRSPITHVVVTK-TDFVITASND---GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVF--D   74 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~w--d   74 (261)
                      |...+.+.+|+| ++.|+..+.+   ..|.+||+.++..+.+..+.+|   ...++|+|||+.|+.++ .+|.+.||  |
T Consensus       202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  278 (429)
T PRK01742        202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMG  278 (429)
T ss_pred             CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEE
Confidence            567799999999 8888877643   4799999987643445445444   34689999999888765 67876655  5


Q ss_pred             ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859          75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
                      +.+++. ..+..+........++++++.++..   ...++...||++.... ....+.   ...  ....|+|++..  +
T Consensus       279 ~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~---s~~~g~~~I~~~~~~~~~~~~l~---~~~--~~~~~SpDG~~--i  347 (429)
T PRK01742        279 ANGGTP-SQLTSGAGNNTEPSWSPDGQSILFT---SDRSGSPQVYRMSASGGGASLVG---GRG--YSAQISADGKT--L  347 (429)
T ss_pred             CCCCCe-EeeccCCCCcCCEEECCCCCEEEEE---ECCCCCceEEEEECCCCCeEEec---CCC--CCccCCCCCCE--E
Confidence            555543 3333333345567788898876654   2456778888765322 222221   111  35678999986  3


Q ss_pred             EEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859         154 VSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF  233 (261)
Q Consensus       154 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  233 (261)
                      +..+.+ .+.+||+. +++...... ..  ....+.|+|+|++|+.++.++...+|++..             ..++.++
T Consensus       348 a~~~~~-~i~~~Dl~-~g~~~~lt~-~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~-------------~~G~~~~  409 (429)
T PRK01742        348 VMINGD-NVVKQDLT-SGSTEVLSS-TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVS-------------ADGRFKA  409 (429)
T ss_pred             EEEcCC-CEEEEECC-CCCeEEecC-CC--CCCCceECCCCCEEEEEEcCCCceEEEEEE-------------CCCCceE
Confidence            333434 46669997 665433222 22  235678999999999999899888888643             3467788


Q ss_pred             ecCCCccceeeeeECCC
Q psy6859         234 EFAKNKTYPSGLSFSPD  250 (261)
Q Consensus       234 ~~~~~~~~v~~~~~s~~  250 (261)
                      .+..|.+.+..++|||-
T Consensus       410 ~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        410 RLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EccCCCCCCCCcccCCC
Confidence            88888888999999985

>KOG1963|consensus

Probab=99.82  E-value=1.3e-17  Score=132.63  Aligned_cols=246  Identities=15%  Similarity=0.169  Sum_probs=160.5

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC--CceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      |+-.++|.++|| ++++|+|..||.|.+|.--.  ........+.=|..+|++++|+++|.+|++|+.++.+.+|.+.++
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence            666789999999 99999999999999996433  222344566778899999999999999999999999999999998


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC---------cceEEEEEEeCCCC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT---------PLTVECIHYLGDAI  149 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~  149 (261)
                      + .+-+..-..++..+.++++++....+    ..|+.|.+....+.+....+..-..         ..-.+.+.++|...
T Consensus       284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~----~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  284 K-KQFLPRLGSPILHIVVSPDSDLYSLV----LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             C-cccccccCCeeEEEEEcCCCCeEEEE----ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            7 33333334567778888888877766    6799999987755443333322111         11234455555322


Q ss_pred             ceEEEEecCCCeEEEEEccCCCcccee-----------------------------------------------------
Q psy6859         150 PTAAVSDQDSSHVHIYDCKGNGTPLHV-----------------------------------------------------  176 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~-----------------------------------------------------  176 (261)
                      .  ++-.+..+.|.+||+. +.+.+..                                                     
T Consensus       359 ~--~vln~~~g~vQ~ydl~-td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW  435 (792)
T KOG1963|consen  359 S--LVLNGHPGHVQFYDLY-TDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFW  435 (792)
T ss_pred             c--eeecCCCceEEEEecc-ccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEE
Confidence            2  3333445556666554 2211111                                                     


Q ss_pred             --------------eccCcccCeEEEEEcC-CCC-EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCcc
Q psy6859         177 --------------LDRLHTKPVVLIKFNP-IYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT  240 (261)
Q Consensus       177 --------------~~~~~~~~v~~~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (261)
                                    +..+|...+...++.+ ... .+++++.||.+++|-+...+...+....     ..+...-.-|..
T Consensus       436 ~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~-----W~c~~i~sy~k~  510 (792)
T KOG1963|consen  436 QYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSN-----WTCKAIGSYHKT  510 (792)
T ss_pred             EEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccc-----eEEeeeeccccC
Confidence                          1124444444444433 222 6788889999999988554333332211     122222223788


Q ss_pred             ceeeeeECCCCceEEEeecC
Q psy6859         241 YPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       241 ~v~~~~~s~~~~~l~s~~~D  260 (261)
                      ++++++|+.||..|+.+-+|
T Consensus       511 ~i~a~~fs~dGslla~s~~~  530 (792)
T KOG1963|consen  511 PITALCFSQDGSLLAVSFDD  530 (792)
T ss_pred             cccchhhcCCCcEEEEecCC
Confidence            99999999999888776554

>KOG0649|consensus

Probab=99.82  E-value=3.8e-17  Score=112.25  Aligned_cols=196  Identities=13%  Similarity=0.161  Sum_probs=146.6

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCce----eeeE--Eeeccc-----cceeEEEEeeCCCEEEEEeCCCc
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGI----EFVK--HFRSHL-----GVIHSICTNYNGTLLCTVASDKA   69 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~----~~~~--~~~~~~-----~~v~~~~~~~~~~~l~s~~~dg~   69 (261)
                      +|..+|+.++|. +.+|++|+. |.|+=|...+...    +.+.  ....|.     ..|+++...|..+-++.++.|+.
T Consensus        60 ahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~  137 (325)
T KOG0649|consen   60 AHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGV  137 (325)
T ss_pred             ccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeE
Confidence            699999999998 456777664 9999998765311    1111  111222     35889999998778888889999


Q ss_pred             EEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc--------eEEE
Q psy6859          70 MKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL--------TVEC  141 (261)
Q Consensus        70 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~--------~~~~  141 (261)
                      ++-||+++|+..++++.+..-+.++........+++.    +.||++++||.++++.++.+....++.        .|.+
T Consensus       138 ~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG----~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga  213 (325)
T KOG0649|consen  138 IYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSG----AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA  213 (325)
T ss_pred             EEEEEecCCEEEEEEcCCcceeeeeeecccCcceeec----CCCccEEEEeccccceeEEeccccChhhcCcccCceeEE
Confidence            9999999999999999888777766664555555554    999999999999999988886544332        4556


Q ss_pred             EEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         142 IHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       142 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      ++-+.+-    +++|+ ...+.+|.++ ..++...|  .-.+++..+.|..|  .++++++.+.+.-|.+.
T Consensus       214 la~~edW----lvCGg-Gp~lslwhLr-sse~t~vf--pipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  214 LAVNEDW----LVCGG-GPKLSLWHLR-SSESTCVF--PIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             EeccCce----EEecC-CCceeEEecc-CCCceEEE--ecccceeEeeeecc--eEEEeccccceeeeeec
Confidence            6655554    66665 6789999999 88888888  46788888888644  57777777788888764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.82  E-value=7.2e-17  Score=123.53  Aligned_cols=237  Identities=12%  Similarity=0.114  Sum_probs=148.5

Q ss_pred             CCeEEEEEcC-CCeEEEe-cCCCeEEEEeccC-CceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CCcEEEEEccc-c
Q psy6859           4 SPITHVVVTK-TDFVITA-SNDGHIKFWKKQE-EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DKAMKVFDVIN-F   78 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~-~~d~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~~-~   78 (261)
                      +....++++| +++|+++ ..++.|.+|+++. +......... ..+....++++|+++++++++. ++.|.+|++.+ +
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            3466789999 7777555 5688999999974 2223333332 2335678999999999888774 78999999964 2


Q ss_pred             c---eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee-----EEeecCCcceEEEEEEeCCCCc
Q psy6859          79 D---MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN-----MIKLDFTPLTVECIHYLGDAIP  150 (261)
Q Consensus        79 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  150 (261)
                      .   .+..+..... ...+.++++++.+++.   ...++.|.+||+.+...+.     ..... .......+.|+|++.+
T Consensus       114 ~~~~~~~~~~~~~~-~~~~~~~p~g~~l~v~---~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~  188 (330)
T PRK11028        114 IPVAPIQIIEGLEG-CHSANIDPDNRTLWVP---CLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQY  188 (330)
T ss_pred             CCCCceeeccCCCc-ccEeEeCCCCCEEEEe---eCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCE
Confidence            2   2222222122 3445678888777554   3567999999998643221     11111 1224567899999986


Q ss_pred             eEEEEecCCCeEEEEEccCC-C--ccceeecc--C---cccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCCee
Q psy6859         151 TAAVSDQDSSHVHIYDCKGN-G--TPLHVLDR--L---HTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFPKC  221 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~-~--~~~~~~~~--~---~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~  221 (261)
                      + +++...++.|.+||+... +  +.+..+..  .   +......+.++|++++|+++. .++.|.+|++....      
T Consensus       189 l-yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~------  261 (330)
T PRK11028        189 A-YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG------  261 (330)
T ss_pred             E-EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC------
Confidence            3 344445899999999721 2  22333320  0   112234689999999998875 47899999985421      


Q ss_pred             eeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         222 VHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                           ...+.+..... ......+.|+|||++|+++..
T Consensus       262 -----~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        262 -----SVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             -----CeEEEeEEEec-cccCCceEECCCCCEEEEEEc
Confidence                 00111222111 134568999999999998764

>KOG2110|consensus

Probab=99.82  E-value=1.4e-16  Score=115.33  Aligned_cols=181  Identities=12%  Similarity=0.162  Sum_probs=139.9

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeecc-CcceeEEEEeecCCc
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLD-FTPLTVECIHYLGDA  102 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  102 (261)
                      ..+++.+....  ..+..+. ...+|.++.++.+  .|+++-.+ .|.|||+++.+.+.++... .++...++++++...
T Consensus        68 r~Lkv~~~Kk~--~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n  141 (391)
T KOG2110|consen   68 RKLKVVHFKKK--TTICEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN  141 (391)
T ss_pred             ceEEEEEcccC--ceEEEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCC
Confidence            35788887765  4444443 3478899988765  67776655 4999999999999988754 555666777665542


Q ss_pred             eeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe-EEEEEccCCCccceeeccC-
Q psy6859         103 IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH-VHIYDCKGNGTPLHVLDRL-  180 (261)
Q Consensus       103 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~~~~~~~-  180 (261)
                      -..+.-.....|.|.+||..+-++...+..  |...+.+++|+++|..  ++++++.|+ ||+|.+. +++.+.+|+.+ 
T Consensus       142 ~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a--H~~~lAalafs~~G~l--lATASeKGTVIRVf~v~-~G~kl~eFRRG~  216 (391)
T KOG2110|consen  142 CYLAYPGSTTSGDVVLFDTINLQPVNTINA--HKGPLAALAFSPDGTL--LATASEKGTVIRVFSVP-EGQKLYEFRRGT  216 (391)
T ss_pred             ceEEecCCCCCceEEEEEcccceeeeEEEe--cCCceeEEEECCCCCE--EEEeccCceEEEEEEcC-CccEeeeeeCCc
Confidence            222212334679999999999888888885  5668999999999975  999999998 7899998 99999999722 


Q ss_pred             cccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccc
Q psy6859         181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       181 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  215 (261)
                      ....|.+++|+|++++|++.+..++|++|.++...
T Consensus       217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  217 YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            34578999999999999999999999999987644

>KOG1188|consensus

Probab=99.81  E-value=2.2e-18  Score=123.44  Aligned_cols=175  Identities=11%  Similarity=0.168  Sum_probs=129.8

Q ss_pred             CEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEee--cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCc
Q psy6859          59 TLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHY--LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTP  136 (261)
Q Consensus        59 ~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~  136 (261)
                      +.++++-..|.|++||..+++.+..++.+......+.+..  .+..+.+    ++.||+|++||++.......+....++
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s----~ssDG~Vr~wD~Rs~~e~a~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVIS----CSSDGTVRLWDIRSQAESARISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEE----eccCCeEEEEEeecchhhhheeccCCC
Confidence            4688888999999999999999999987766555555544  3344444    499999999999988777666655444


Q ss_pred             -ceEEEEEEeCCCCceEEEEecC----CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEee
Q psy6859         137 -LTVECIHYLGDAIPTAAVSDQD----SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWS  210 (261)
Q Consensus       137 -~~~~~~~~~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd  210 (261)
                       ....+++.+-...  ++++|.+    +-.+.+||+|...+++..+...|...|++++|+|... +|++|+.||-+.+||
T Consensus       117 ~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD  194 (376)
T KOG1188|consen  117 GTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD  194 (376)
T ss_pred             CCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence             4566777654443  2555543    6679999999556668777668999999999999764 889999999999999


Q ss_pred             cccccccCCeeeeeecccccceeecCCCccceeeeeECCCC
Q psy6859         211 GYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDG  251 (261)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  251 (261)
                      +...            .....+...-.|...|..+.|..++
T Consensus       195 ~~~d------------~EeDaL~~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  195 TKKD------------NEEDALLHVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             cCCC------------cchhhHHHhhcccceeeeeeeecCC
Confidence            8642            1122233333477789999998877

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.81  E-value=2e-16  Score=125.04  Aligned_cols=226  Identities=18%  Similarity=0.352  Sum_probs=167.7

Q ss_pred             CeEEEEE-cC-CC-eEEEecC-CCeEEEEeccC-CceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CCcEEEEEcccc
Q psy6859           5 PITHVVV-TK-TD-FVITASN-DGHIKFWKKQE-EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DKAMKVFDVINF   78 (261)
Q Consensus         5 ~v~~~~~-~~-~~-~l~s~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~~~   78 (261)
                      .+..+.+ ++ +. .++..+. |+.+.+|+... .  .....+..|...|..++|+|+++++++++. |+.+++|++..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG--KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG  188 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCC--eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence            4566666 66 55 4555444 99999999987 4  677888889999999999999998888885 999999999988


Q ss_pred             ceeeeeeccCcceeEEEEeecCC-ceeeeeeecCCCCeEEEEEcCCCceee-EEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGD-AIPTAAVSDQDSSRVHIYDCKGNDMIN-MIKLDFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                      ..+..+..+...+....+.+.+. .+..    ++.|+.+.+||...+..+. .+..+.... +.  .|++++..  ++++
T Consensus       189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~--~~~~  259 (466)
T COG2319         189 KPLSTLAGHTDPVSSLAFSPDGGLLIAS----GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS--SFSPDGSL--LASG  259 (466)
T ss_pred             ceEEeeccCCCceEEEEEcCCcceEEEE----ecCCCcEEEEECCCCcEEeeecCCCCcce-eE--eECCCCCE--EEEe
Confidence            88888777777777788776665 2222    4789999999988776666 455443322 22  78888843  6688


Q ss_pred             cCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec-
Q psy6859         157 QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF-  235 (261)
Q Consensus       157 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-  235 (261)
                      +.++.+++|+.+.....+..+. .|...+.++.|+|++..+++++.|+.+.+||...               ....... 
T Consensus       260 ~~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------------~~~~~~~~  323 (466)
T COG2319         260 SSDGTIRLWDLRSSSSLLRTLS-GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET---------------GKLLSSLT  323 (466)
T ss_pred             cCCCcEEEeeecCCCcEEEEEe-cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC---------------CceEEEee
Confidence            9999999999983333244444 7889999999999888888888888899998754               2222222 


Q ss_pred             -CCCccceeeeeECCCCceEEEe
Q psy6859         236 -AKNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       236 -~~~~~~v~~~~~s~~~~~l~s~  257 (261)
                       ..|...+..+.|.+++..++.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         324 LKGHEGPVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             ecccCCceEEEEECCCCCEEEEe
Confidence             3677778888884333455555

>KOG1523|consensus

Probab=99.81  E-value=1.5e-17  Score=118.29  Aligned_cols=203  Identities=8%  Similarity=0.035  Sum_probs=159.0

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc-cccce
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEG-IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV-INFDM   80 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~-~~~~~   80 (261)
                      .+|+|.+|++ ...+|.+-....|.||...... .+...+++.|...|+++.|+|..+.|++|+.|..-++|.. ..++.
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W   90 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW   90 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence            6899999999 8899999999999999998866 7889999999999999999999999999999999999998 44443


Q ss_pred             eeee--eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCcee--eEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859          81 INMI--KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI--NMIKLDFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus        81 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                      ..++  ........++.++|.++.++..    +..+.|.+|-++..+-=  ...........|.+++|+|++.  ++++|
T Consensus        91 kptlvLlRiNrAAt~V~WsP~enkFAVg----Sgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV--LlaaG  164 (361)
T KOG1523|consen   91 KPTLVLLRINRAATCVKWSPKENKFAVG----SGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV--LLAAG  164 (361)
T ss_pred             ccceeEEEeccceeeEeecCcCceEEec----cCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc--eeccc
Confidence            3332  2334456777888888888776    88899999887755421  1111112345889999999995  48899


Q ss_pred             cCCCeEEEEEccCC-----------------CccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         157 QDSSHVHIYDCKGN-----------------GTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       157 ~~d~~i~i~d~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      +.|+..++|..--.                 ++++.++. ...+.+..+.|+|+|..|+-.+.|..+.+-|...
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            99999999975310                 12233343 4567899999999999999999999999998753

>KOG1524|consensus

Probab=99.80  E-value=3.1e-18  Score=129.70  Aligned_cols=225  Identities=12%  Similarity=0.201  Sum_probs=159.5

Q ss_pred             CCCCeEEEEEcCCCeEEEecCCCeEEEE-eccCCceeeeEEeeccccceeE-EEEe-------eCCCEEEEEeCCCcEEE
Q psy6859           2 HRSPITHVVVTKTDFVITASNDGHIKFW-KKQEEGIEFVKHFRSHLGVIHS-ICTN-------YNGTLLCTVASDKAMKV   72 (261)
Q Consensus         2 H~~~v~~~~~~~~~~l~s~~~d~~i~iw-~~~~~~~~~~~~~~~~~~~v~~-~~~~-------~~~~~l~s~~~dg~v~~   72 (261)
                      |...|.|+.|+...-+...+.|..+.+| ++.....+.....   ...|.. +..-       .....++.++.||.+.+
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p---~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLP---DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCC---cccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence            5677889999884444445555555555 4443221211111   111111 1110       12346888899999999


Q ss_pred             EEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          73 FDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        73 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      .+ +.++..+.+..+...+.+..++++|..+++.    +.||.|++|.- ++....++.-  ....+.|++|.|+.... 
T Consensus        90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~----GEDG~iKiWSr-sGMLRStl~Q--~~~~v~c~~W~p~S~~v-  160 (737)
T KOG1524|consen   90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTA----GEDGVIKIWSR-SGMLRSTVVQ--NEESIRCARWAPNSNSI-  160 (737)
T ss_pred             ec-ccchhhhhhhhhhhhhhhcccCCCCceeeee----cCCceEEEEec-cchHHHHHhh--cCceeEEEEECCCCCce-
Confidence            88 4677777777777778888899999877777    99999999994 3433333221  34589999999998863 


Q ss_pred             EEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL  232 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  232 (261)
                      +.+.  .+.+.|=.+. ....+-..+ .|++-|.++.|+|...++++|++|-..++||-                .+..+
T Consensus       161 l~c~--g~h~~IKpL~-~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~----------------~G~~L  220 (737)
T KOG1524|consen  161 VFCQ--GGHISIKPLA-ANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA----------------QGANL  220 (737)
T ss_pred             EEec--CCeEEEeecc-cccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecc----------------cCccc
Confidence            3332  4678887777 444455566 89999999999999999999999999999995                37888


Q ss_pred             eecCCCccceeeeeECCCCceEEEeec
Q psy6859         233 FEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       233 ~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      +.-..|+-+|++++|.|+ +.++.+|.
T Consensus       221 f~S~~~ey~ITSva~npd-~~~~v~S~  246 (737)
T KOG1524|consen  221 FTSAAEEYAITSVAFNPE-KDYLLWSY  246 (737)
T ss_pred             ccCChhccceeeeeeccc-cceeeeee
Confidence            888899999999999999 66666664

>KOG1009|consensus

Probab=99.80  E-value=2.4e-18  Score=125.81  Aligned_cols=219  Identities=19%  Similarity=0.253  Sum_probs=150.9

Q ss_pred             CCeEEEEEcC-C-CeEEEecCCCeEEEEeccCC-------ceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           4 SPITHVVVTK-T-DFVITASNDGHIKFWKKQEE-------GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         4 ~~v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      .+|..+.|.+ . +.++||+.|..|++|.+...       ..+....+..|...|+++.|+|+|+.|++|+.+|.+.+|-
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            5899999998 3 48999999999999988642       2355667888999999999999999999999999999998


Q ss_pred             ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      ...-..   +             +... - .     ..+.       +.....+.+.  .+...+..++|+|++.+  ++
T Consensus        94 ~~~~~~---~-------------~~d~-e-~-----~~~k-------e~w~v~k~lr--~h~~diydL~Ws~d~~~--l~  139 (434)
T KOG1009|consen   94 QGDVRI---F-------------DADT-E-A-----DLNK-------EKWVVKKVLR--GHRDDIYDLAWSPDSNF--LV  139 (434)
T ss_pred             ecCcCC---c-------------cccc-h-h-----hhCc-------cceEEEEEec--ccccchhhhhccCCCce--ee
Confidence            654000   0             0000 0 0     0000       0011112222  24557889999999986  88


Q ss_pred             EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC-e--eee---eeccc
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP-K--CVH---FESKL  228 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~--~~~---~~~~~  228 (261)
                      +++.|+.+++||+. .++.+..+. .|...+..++|.|-++++++-+.|...+.+.+........ .  ...   .....
T Consensus       140 s~s~dns~~l~Dv~-~G~l~~~~~-dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e  217 (434)
T KOG1009|consen  140 SGSVDNSVRLWDVH-AGQLLAILD-DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE  217 (434)
T ss_pred             eeeccceEEEEEec-cceeEeecc-ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence            99999999999999 999999997 9999999999999999999999888777776543211110 0  000   00011


Q ss_pred             ccceeecCC--CccceeeeeECCCCceEEEee
Q psy6859         229 DTDLFEFAK--NKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       229 ~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      ++..+.+..  -..-...++|+|||.+|++.+
T Consensus       218 ~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  218 GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             cceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            111111111  112346789999999998753

>KOG2111|consensus

Probab=99.80  E-value=1.4e-16  Score=113.33  Aligned_cols=228  Identities=13%  Similarity=0.178  Sum_probs=154.4

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCC------CcEEEEEcc
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASD------KAMKVFDVI   76 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d------g~v~~wd~~   76 (261)
                      ...+++|+. ...++. +.|.-.+||+.+--.....+.+....-.+..+-|-  .++++-. +.+      ..|.|||-.
T Consensus         7 ~~lsvs~NQD~ScFav-a~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAV-ATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEE-EecCceEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence            455689988 445555 44566789988752111111221111122222232  2354433 322      469999976


Q ss_pred             ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC-CCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          77 NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK-GNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      ..+++.++..... +  ..+.-..+.++.+     ..+.|.+|... +-+.+..+.....|...+++....+.. .++.-
T Consensus        84 k~~~i~el~f~~~-I--~~V~l~r~riVvv-----l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~-~LafP  154 (346)
T KOG2111|consen   84 KERCIIELSFNSE-I--KAVKLRRDRIVVV-----LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS-LLAFP  154 (346)
T ss_pred             cCcEEEEEEeccc-e--eeEEEcCCeEEEE-----ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce-EEEcC
Confidence            7777777775433 3  3333445666666     68999999988 557777887776677776666555443 33444


Q ss_pred             ecCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEEcCCCe-EEEeecccccccCCeeeeeecccccce
Q psy6859         156 DQDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGI-LEYWSGYKQEFKFPKCVHFESKLDTDL  232 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~  232 (261)
                      |-.-|.|+|-|+. ..+.  -..+. +|.+.|.+++.+.+|..+|+++..|+ |+|||..+               ++.+
T Consensus       155 g~k~GqvQi~dL~-~~~~~~p~~I~-AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~---------------g~~l  217 (346)
T KOG2111|consen  155 GFKTGQVQIVDLA-STKPNAPSIIN-AHDSDIACVALNLQGTLVATASTKGTLIRIFDTED---------------GTLL  217 (346)
T ss_pred             CCccceEEEEEhh-hcCcCCceEEE-cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC---------------CcEe
Confidence            6667999999998 4433  35666 99999999999999999999999997 79999854               6777


Q ss_pred             eecCC--CccceeeeeECCCCceEEEeecCC
Q psy6859         233 FEFAK--NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       233 ~~~~~--~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+++.  ....|.+++|||+..+||++|+-|
T Consensus       218 ~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg  248 (346)
T KOG2111|consen  218 QELRRGVDRADIYCIAFSPNSSWLAVSSDKG  248 (346)
T ss_pred             eeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence            77654  456899999999999999998754

>KOG0322|consensus

Probab=99.79  E-value=1.4e-17  Score=115.45  Aligned_cols=200  Identities=18%  Similarity=0.222  Sum_probs=138.2

Q ss_pred             CCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEe---------------------------------------
Q psy6859           2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHF---------------------------------------   42 (261)
Q Consensus         2 H~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---------------------------------------   42 (261)
                      |...|+.+.--|+..+.+-+.|+.+.+|++.......+..+                                       
T Consensus        55 g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g  134 (323)
T KOG0322|consen   55 GRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG  134 (323)
T ss_pred             ccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC
Confidence            45678888877877888999999999999875211000000                                       


Q ss_pred             ------------eccccceeEEEEee-CCC--EEEEEeCCCcEEEEEccccceeeeee----------ccCcceeEEEEe
Q psy6859          43 ------------RSHLGVIHSICTNY-NGT--LLCTVASDKAMKVFDVINFDMINMIK----------LDFTPLTVECIH   97 (261)
Q Consensus        43 ------------~~~~~~v~~~~~~~-~~~--~l~s~~~dg~v~~wd~~~~~~~~~~~----------~~~~~~~~~~~~   97 (261)
                                  .+..+.+.+..+.. +++  ++++|-++|.+.+||+.++..+..++          .+.+++..+.+.
T Consensus       135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya  214 (323)
T KOG0322|consen  135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA  214 (323)
T ss_pred             ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec
Confidence                        00123344444322 222  45666789999999999874443332          233343333333


Q ss_pred             ecCCceeeeeeecCCCCeEEEEEcCCC--ce--eeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc
Q psy6859          98 YLGDAIPTAAVSDQDSSRVHIYDCKGN--DM--INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP  173 (261)
Q Consensus        98 ~~~~~~~~~~~s~~~d~~i~i~d~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  173 (261)
                      +    .....++|+.+..+..|.++..  .+  ...+..  ....+..+..-||++  ++++++.|++|++|..+ +..+
T Consensus       215 s----~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l--knpGv~gvrIRpD~K--IlATAGWD~RiRVyswr-tl~p  285 (323)
T KOG0322|consen  215 S----SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL--KNPGVSGVRIRPDGK--ILATAGWDHRIRVYSWR-TLNP  285 (323)
T ss_pred             h----hhcCCcCCCccccceeeeeccccCcccccceEEe--cCCCccceEEccCCc--EEeecccCCcEEEEEec-cCCc
Confidence            2    1222345577888889987743  22  222222  233577888889997  49999999999999999 9999


Q ss_pred             ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         174 LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       174 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      +..++ .|.+.|++++|+|+..++|+++.|++|.+|++
T Consensus       286 LAVLk-yHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  286 LAVLK-YHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhh-hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99998 99999999999999999999999999999986

>KOG1517|consensus

Probab=99.78  E-value=7.4e-17  Score=131.16  Aligned_cols=233  Identities=12%  Similarity=0.115  Sum_probs=159.9

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecc---ccceeEEEEee--CCCEEEEEeCCCcEEEEEcccc
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH---LGVIHSICTNY--NGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      +-..+.|+| ...++++.....|+|||.+.+  +....|..+   ...|+.+.+-.  |..++++|+.||.|+||+-...
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            345678999 888999888889999999887  566655543   24688888864  5668999999999999985422


Q ss_pred             -----ceeeeee-------ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC
Q psy6859          79 -----DMINMIK-------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG  146 (261)
Q Consensus        79 -----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (261)
                           +.+..+.       .......+..+......+++.    +.-..|+|||.........+... ....++++..+-
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t----Gd~r~IRIWDa~~E~~~~diP~~-s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT----GDVRSIRIWDAHKEQVVADIPYG-SSTLVTALSADL 1218 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec----CCeeEEEEEecccceeEeecccC-CCccceeecccc
Confidence                 2222221       111112233333333334333    56889999999988887777654 334566666543


Q ss_pred             CCCceEEEEecCCCeEEEEEccCCC--ccceeeccCcccC--eEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCee
Q psy6859         147 DAIPTAAVSDQDSSHVHIYDCKGNG--TPLHVLDRLHTKP--VVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKC  221 (261)
Q Consensus       147 ~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  221 (261)
                      ... .++++|..||.|++||.+...  ..+...+ .|+..  |..+.+.+.|- .|++|+.||.|++||++..       
T Consensus      1219 ~~g-n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~------- 1289 (1387)
T KOG1517|consen 1219 VHG-NIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS------- 1289 (1387)
T ss_pred             cCC-ceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC-------
Confidence            331 248889999999999998333  3566666 78777  99999999776 5999999999999999752       


Q ss_pred             eeeecccccceeecCCC---ccceeeeeECCCCceEEEeec
Q psy6859         222 VHFESKLDTDLFEFAKN---KTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       222 ~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~  259 (261)
                            ..+.......|   .+..+++..+++...+|+|+.
T Consensus      1290 ------~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1290 ------SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             ------cccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence                  11111122222   235889999999999999874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=8.6e-17  Score=126.83  Aligned_cols=206  Identities=10%  Similarity=0.001  Sum_probs=135.4

Q ss_pred             CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC---CcEEEEEccccceeeeeeccCcceeEEEEeec
Q psy6859          23 DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD---KAMKVFDVINFDMINMIKLDFTPLTVECIHYL   99 (261)
Q Consensus        23 d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~   99 (261)
                      +..|.+||.+..+   .+.+..|...+....|+|||+.|+.++.+   ..|++||+.+++......... ......++++
T Consensus       183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCC
Confidence            5789999987652   34556677889999999999999987654   369999998875433222222 2235678899


Q ss_pred             CCceeeeeeecCCCCeEEE--EEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceee
Q psy6859         100 GDAIPTAAVSDQDSSRVHI--YDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVL  177 (261)
Q Consensus       100 ~~~~~~~~~s~~~d~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  177 (261)
                      ++.++..   .+.++.+.|  ||+.+++.. .+..  ....+....|+|++..+ +++...++...+|++...+.....+
T Consensus       259 G~~La~~---~~~~g~~~Iy~~d~~~~~~~-~lt~--~~~~~~~~~wSpDG~~i-~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        259 GSRLAFA---SSKDGVLNIYVMGANGGTPS-QLTS--GAGNNTEPSWSPDGQSI-LFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             CCEEEEE---EecCCcEEEEEEECCCCCeE-eecc--CCCCcCCEEECCCCCEE-EEEECCCCCceEEEEECCCCCeEEe
Confidence            8877654   235665554  566666543 3332  33356789999999863 3444567888888876333333333


Q ss_pred             ccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEe
Q psy6859         178 DRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       178 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  257 (261)
                        .+..  ....|+|+|++|+..+.++ +.+||+.++               +.......+  ....+.|+|||++|+.+
T Consensus       332 --~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g---------------~~~~lt~~~--~~~~~~~sPdG~~i~~~  389 (429)
T PRK01742        332 --GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSG---------------STEVLSSTF--LDESPSISPNGIMIIYS  389 (429)
T ss_pred             --cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCC---------------CeEEecCCC--CCCCceECCCCCEEEEE
Confidence              2333  4578999999998887765 556898542               222111111  23568899999999998


Q ss_pred             ecCC
Q psy6859         258 SMDR  261 (261)
Q Consensus       258 ~~Dg  261 (261)
                      +.+|
T Consensus       390 s~~g  393 (429)
T PRK01742        390 STQG  393 (429)
T ss_pred             EcCC
Confidence            8764

>KOG1240|consensus

Probab=99.78  E-value=2.1e-16  Score=130.21  Aligned_cols=206  Identities=15%  Similarity=0.224  Sum_probs=151.1

Q ss_pred             CCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCc-----eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           2 HRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEG-----IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         2 H~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      |...|..++.++  +.+++|||.||+|++|+..+..     .+...++..-.+.+.++...+.++.+|.++.||.|++.+
T Consensus      1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred             ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence            778888999987  4899999999999999986521     123334443467889999999999999999999999999


Q ss_pred             ccccc-------eeeeeeccCcc--eeEEEEeec-CC-ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEE
Q psy6859          75 VINFD-------MINMIKLDFTP--LTVECIHYL-GD-AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIH  143 (261)
Q Consensus        75 ~~~~~-------~~~~~~~~~~~--~~~~~~~~~-~~-~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  143 (261)
                      +....       ..+....+..+  .....+... +. .++.    +...+.|..||++.......++.....+.+++++
T Consensus      1127 id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy----~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1127 IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY----ATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred             ccccccccceeeeeecccccCCCceEEeecccccccceeEEE----EEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence            87521       11111111111  111122122 22 2222    2678999999999888777777777778999999


Q ss_pred             EeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC---EEE-EEc-CCCeEEEeecccc
Q psy6859         144 YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ---VVV-SVD-KAGILEYWSGYKQ  214 (261)
Q Consensus       144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~-~~~-~dg~i~iwd~~~~  214 (261)
                      .+|.+.+  ++.|+..|.+.+||+| -+.++..+..++..+++.+..+|-.+   ..+ +++ ..+.|.+|++.++
T Consensus      1203 idp~~~W--lviGts~G~l~lWDLR-F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1203 IDPWCNW--LVIGTSRGQLVLWDLR-FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             ecCCceE--EEEecCCceEEEEEee-cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            9999986  8899999999999999 88888888756678899988887543   444 444 6788999999765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=2.3e-15  Score=115.24  Aligned_cols=226  Identities=10%  Similarity=0.116  Sum_probs=143.0

Q ss_pred             EEEecCCCeEEEEeccC-CceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEcc-ccce--eeeeeccCcce
Q psy6859          17 VITASNDGHIKFWKKQE-EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVI-NFDM--INMIKLDFTPL   91 (261)
Q Consensus        17 l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~-~~~~--~~~~~~~~~~~   91 (261)
                      +++...++.|.+|++.+ +..+.+..+. +.+....++++|++++|++++ .++.|.+|++. +++.  +........ .
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~-p   82 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS-P   82 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC-c
Confidence            44557789999999964 3334556665 345678899999999887765 57889999986 3332  233332223 3


Q ss_pred             eEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCC
Q psy6859          92 TVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN  170 (261)
Q Consensus        92 ~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  170 (261)
                      ..+.++++++.+++.   ...++.|.+|++.+.. ................+.++|++.+ ++++...++.|.+||+...
T Consensus        83 ~~i~~~~~g~~l~v~---~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         83 THISTDHQGRFLFSA---SYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             eEEEECCCCCEEEEE---EcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEECCC
Confidence            456777888877765   2358999999997432 2111111111124567889999976 3566677899999999732


Q ss_pred             Cccce----eeccCcccCeEEEEEcCCCCEEEEEcC-CCeEEEeecccccccCCeeeeeecccccceeecCC------Cc
Q psy6859         171 GTPLH----VLDRLHTKPVVLIKFNPIYQVVVSVDK-AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK------NK  239 (261)
Q Consensus       171 ~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  239 (261)
                      +.+..    ............+.|+|+|++++++.. ++.|.+|+++...-           ..+.+..+..      +.
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-----------~~~~~~~~~~~p~~~~~~  227 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-----------EIECVQTLDMMPADFSDT  227 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-----------CEEEEEEEecCCCcCCCC
Confidence            32211    111012344678999999999987775 89999999863100           0111111111      12


Q ss_pred             cceeeeeECCCCceEEEeec
Q psy6859         240 TYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~  259 (261)
                      .....+.++|+|++|+++..
T Consensus       228 ~~~~~i~~~pdg~~lyv~~~  247 (330)
T PRK11028        228 RWAADIHITPDGRHLYACDR  247 (330)
T ss_pred             ccceeEEECCCCCEEEEecC
Confidence            23346889999999988743

>KOG1517|consensus

Probab=99.77  E-value=9.9e-17  Score=130.45  Aligned_cols=234  Identities=15%  Similarity=0.214  Sum_probs=156.3

Q ss_pred             CCeEEEEEcC---CCeEEEecCCCeEEEEeccCC---ceeeeEEeeccc-------cceeEEEEeeCCCEEEEEeCCCcE
Q psy6859           4 SPITHVVVTK---TDFVITASNDGHIKFWKKQEE---GIEFVKHFRSHL-------GVIHSICTNYNGTLLCTVASDKAM   70 (261)
Q Consensus         4 ~~v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~dg~v   70 (261)
                      ..|+.+.+-.   ..++++|+.||.|+||+-...   ..+.+..+.+-+       +.=.-+.|.....+|++++.-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            4577888765   358999999999999975332   223443332211       111334566655577777778899


Q ss_pred             EEEEccccceeeeeeccCcceeEEEEee---cCCceeeeeeecCCCCeEEEEEcCCCc---eeeEEeecCCcceEEEEEE
Q psy6859          71 KVFDVINFDMINMIKLDFTPLTVECIHY---LGDAIPTAAVSDQDSSRVHIYDCKGND---MINMIKLDFTPLTVECIHY  144 (261)
Q Consensus        71 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~  144 (261)
                      +|||....+.+..+..... ..+..++.   .++.++++    -.||.|++||.+...   .+...+.+.....|..+.+
T Consensus      1190 RIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AG----faDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAG----FADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred             EEEecccceeEeecccCCC-ccceeecccccCCceEEEe----ecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence            9999988777776654422 22333333   24444444    789999999988543   3445555544445888888


Q ss_pred             eCCCCceEEEEecCCCeEEEEEccCCC-ccceeeccCc---ccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCe
Q psy6859         145 LGDAIPTAAVSDQDSSHVHIYDCKGNG-TPLHVLDRLH---TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPK  220 (261)
Q Consensus       145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  220 (261)
                      .+.+.. -+++|+.+|.|++||++... .....+. .|   .+..+++..+++...+|+|+. +.|+||++..+      
T Consensus      1265 q~~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv-~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~------ 1335 (1387)
T KOG1517|consen 1265 QRQGLG-ELVSGSQDGDIQLLDLRMSSKETFLTIV-AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE------ 1335 (1387)
T ss_pred             ecCCCc-ceeeeccCCeEEEEecccCcccccceee-eccccCccceeeeeccCCCeeeecCc-ceEEEEecChh------
Confidence            876643 38899999999999999421 1111221 22   235999999999999999998 99999998642      


Q ss_pred             eeeeecccccceeecC-------CCccceeeeeECCCCceEEEeecCC
Q psy6859         221 CVHFESKLDTDLFEFA-------KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       221 ~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                .+..++       ...+.+.+++|+|---+||+|+.|.
T Consensus      1336 ----------~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1336 ----------QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred             ----------hhcccccCcccccCcCCCcceeeecchhHhhhhccCCc
Confidence                      222221       1345679999999988898887773

>KOG1523|consensus

Probab=99.76  E-value=1.9e-16  Score=112.71  Aligned_cols=210  Identities=12%  Similarity=0.149  Sum_probs=160.5

Q ss_pred             cccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc---eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEc
Q psy6859          45 HLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD---MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC  121 (261)
Q Consensus        45 ~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~  121 (261)
                      -..+|+|.+|++|.+.++.+-....|.||.....+   ...+++.+...+..+.+.+..+.+.++    +.|..-++|..
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc----s~drnayVw~~   84 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC----SHDRNAYVWTQ   84 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc----cCCCCcccccc
Confidence            34789999999999999999999999999987654   566777788888999999999999888    99999999998


Q ss_pred             -CCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccc---eeeccCcccCeEEEEEcCCCCEE
Q psy6859         122 -KGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPL---HVLDRLHTKPVVLIKFNPIYQVV  197 (261)
Q Consensus       122 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l  197 (261)
                       ..++-..++.+-......+++.|+|....  +++|+....|.+|-++ ...--   +.++..+...|+++.|+|++-+|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enk--FAVgSgar~isVcy~E-~ENdWWVsKhikkPirStv~sldWhpnnVLl  161 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENK--FAVGSGARLISVCYYE-QENDWWVSKHIKKPIRSTVTSLDWHPNNVLL  161 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCce--EEeccCccEEEEEEEe-cccceehhhhhCCccccceeeeeccCCccee
Confidence             55554444444444557899999999886  8888888999999887 33221   12223678899999999999999


Q ss_pred             EEEcCCCeEEEeecccccccC-Ceeee--eecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         198 VSVDKAGILEYWSGYKQEFKF-PKCVH--FESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       198 ~~~~~dg~i~iwd~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++|+.|+..++|..--...+. |....  -+..-++.+.++....+.|..+.|+|+|..|+-.+.|.
T Consensus       162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds  228 (361)
T KOG1523|consen  162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS  228 (361)
T ss_pred             cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC
Confidence            999999999999753222211 11111  12233555556656678999999999999999888773

>KOG1445|consensus

Probab=99.76  E-value=1.6e-17  Score=128.52  Aligned_cols=203  Identities=14%  Similarity=0.152  Sum_probs=149.6

Q ss_pred             CCeEEEEEcC--CCeEEEecCCCeEEEEeccCCc-----eeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEc
Q psy6859           4 SPITHVVVTK--TDFVITASNDGHIKFWKKQEEG-----IEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         4 ~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~   75 (261)
                      ..|+.+.|.|  .+.||.++.||.|++|.+..++     ..+...+..|...|+++.|+| -...|++++.|-+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            4689999999  5789999999999999987643     355678899999999999998 4568999999999999999


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      .+++....+..+...+....++++|+.++++    ..||+|++|+.++++ +++.-.... ..+-..+.|.-++.+ +++
T Consensus       708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtV----cKDg~~rVy~Prs~e~pv~Eg~gpv-gtRgARi~wacdgr~-viv  781 (1012)
T KOG1445|consen  708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATV----CKDGTLRVYEPRSREQPVYEGKGPV-GTRGARILWACDGRI-VIV  781 (1012)
T ss_pred             hhhhhhheeccCcCceeEEEECCCCcceeee----ecCceEEEeCCCCCCCccccCCCCc-cCcceeEEEEecCcE-EEE
Confidence            9999999999999999999999999999999    899999999998764 333322221 123345666667764 344


Q ss_pred             Eec---CCCeEEEEEccCCC--ccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeeccc
Q psy6859         155 SDQ---DSSHVHIYDCKGNG--TPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       155 ~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  213 (261)
                      +|-   ....|.+||.. +-  .++.+....-...+.--.+.+|.. ++++|-.|..|.+|.+-.
T Consensus       782 ~Gfdk~SeRQv~~Y~Aq-~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  782 VGFDKSSERQVQMYDAQ-TLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             ecccccchhhhhhhhhh-hccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence            442   24568888876 32  333333201111122224566666 557888999999998743

>KOG3881|consensus

Probab=99.75  E-value=3e-16  Score=114.48  Aligned_cols=236  Identities=15%  Similarity=0.116  Sum_probs=165.2

Q ss_pred             CCeEEEEEcC---CCeEEEecCCCeEEEEeccCCceeee----EEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859           4 SPITHVVVTK---TDFVITASNDGHIKFWKKQEEGIEFV----KHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         4 ~~v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~   76 (261)
                      ..|+.++|..   .+.+...+.|-.+......+.+....    .......++|..++... + .|++|-.+|.+.+|...
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d-g-~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD-G-TLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC-C-EEEEEecCCcEEEEecc
Confidence            3566777764   23455555666777766665422211    13344566777777653 3 78889999999999987


Q ss_pred             ccc----eeeeeeccCcceeEEEEeecCCceeeeeeecCCC--CeEEEEEcCCCceeeEEeec-------CCcceEEEEE
Q psy6859          77 NFD----MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS--SRVHIYDCKGNDMINMIKLD-------FTPLTVECIH  143 (261)
Q Consensus        77 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d--~~i~i~d~~~~~~~~~~~~~-------~~~~~~~~~~  143 (261)
                      .+.    .+..+..+. +...+.-.+....+++   +|+..  ..+++||+++.+.+..-+..       .-|..++.+.
T Consensus       134 ~~d~hss~l~~la~g~-g~~~~r~~~~~p~Iva---~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATGP-GLYDVRQTDTDPYIVA---TGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             CCccccccceeeecCC-ceeeeccCCCCCceEe---cCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence            443    222233221 2222222332333332   35777  88999999987443322111       1245778888


Q ss_pred             EeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeee
Q psy6859         144 YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVH  223 (261)
Q Consensus       144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  223 (261)
                      |.+.....-+++++.-+.+++||.+...+|+..|. -.+.+++++...|.++++++|..-|.+..||++.          
T Consensus       210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~----------  278 (412)
T KOG3881|consen  210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG----------  278 (412)
T ss_pred             ecCCCCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeeeecCCCcEEEEecccchhheecccC----------
Confidence            98774334489999999999999996678999997 7899999999999999999999999999999965          


Q ss_pred             eecccccceee-cCCCccceeeeeECCCCceEEEeecCC
Q psy6859         224 FESKLDTDLFE-FAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       224 ~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                           ++.... +++..+.|+++..+|.+++||++|-|+
T Consensus       279 -----~kl~g~~~kg~tGsirsih~hp~~~~las~GLDR  312 (412)
T KOG3881|consen  279 -----GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDR  312 (412)
T ss_pred             -----ceeeccccCCccCCcceEEEcCCCceEEeeccce
Confidence                 444444 788899999999999999999999885

>KOG0290|consensus

Probab=99.75  E-value=3.8e-16  Score=109.95  Aligned_cols=198  Identities=17%  Similarity=0.186  Sum_probs=139.6

Q ss_pred             CCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCC-ceeeeEEeeccccceeEEEEeeCC-CEEEEEeCCCcEEEEEccc
Q psy6859           2 HRSPITHVVVTK--TDFVITASNDGHIKFWKKQEE-GIEFVKHFRSHLGVIHSICTNYNG-TLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         2 H~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~~wd~~~   77 (261)
                      |..++++..|+.  .++|.+.+-|-+..|||++.+ ......++-+|..+|..++|..++ +.+++++.||.+|++|++.
T Consensus       149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~  228 (364)
T KOG0290|consen  149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS  228 (364)
T ss_pred             cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence            456899999997  578999999999999999985 223456778899999999999844 5789999999999999987


Q ss_pred             cceeeeeecc---CcceeEEEEee-cCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          78 FDMINMIKLD---FTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        78 ~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      .+--..+-..   ..+..-+.+.. +.+++++.   +-....|.|.|++.. .++..++  .|...|..++|.|..... 
T Consensus       229 leHSTIIYE~p~~~~pLlRLswnkqDpnymATf---~~dS~~V~iLDiR~P~tpva~L~--~H~a~VNgIaWaPhS~~h-  302 (364)
T KOG0290|consen  229 LEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF---AMDSNKVVILDIRVPCTPVARLR--NHQASVNGIAWAPHSSSH-  302 (364)
T ss_pred             cccceEEecCCCCCCcceeeccCcCCchHHhhh---hcCCceEEEEEecCCCcceehhh--cCcccccceEecCCCCce-
Confidence            5533322211   22333333333 33344433   245678999999865 3444444  466789999999987753 


Q ss_pred             EEEecCCCeEEEEEccCCCc-----cceeeccCcccCeEEEEEcC-CCCEEEEEcCCCeEEE
Q psy6859         153 AVSDQDSSHVHIYDCKGNGT-----PLHVLDRLHTKPVVLIKFNP-IYQVVVSVDKAGILEY  208 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i  208 (261)
                      +.++++|..+.+||+....+     ++-.+  .-.+.|+.+.|+| ...+++.+.. +.+.+
T Consensus       303 ictaGDD~qaliWDl~q~~~~~~~dPilay--~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  303 ICTAGDDCQALIWDLQQMPRENGEDPILAY--TAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             eeecCCcceEEEEecccccccCCCCchhhh--hccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            78888999999999972222     23333  2567899999996 4557877763 34444

>KOG2394|consensus

Probab=99.75  E-value=8.4e-17  Score=121.92  Aligned_cols=196  Identities=11%  Similarity=0.071  Sum_probs=133.7

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeE--EeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEccccceeeeeeccCcc
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVK--HFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVINFDMINMIKLDFTP   90 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~   90 (261)
                      +--++.|-..|.+.+.+........+.  .....+..|+++.|-|. ...++.+-.+|.+.+||..-.       .....
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-------~~~t~  257 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-------CGATA  257 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-------ccCCC
Confidence            335677888888888887653111110  11113478999999984 445666678999999997211       00000


Q ss_pred             eeEEEEeecCCceeeeeeecCCCCeEEEEE-cCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC
Q psy6859          91 LTVECIHYLGDAIPTAAVSDQDSSRVHIYD-CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG  169 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  169 (261)
                      . ......++..+...           .|- ..+..++..+..  ....+..++|+||+.+  +++.+.||.++|||.. 
T Consensus       258 p-~~~~~k~~~~f~i~-----------t~ksk~~rNPv~~w~~--~~g~in~f~FS~DG~~--LA~VSqDGfLRvF~fd-  320 (636)
T KOG2394|consen  258 P-SYQALKDGDQFAIL-----------TSKSKKTRNPVARWHI--GEGSINEFAFSPDGKY--LATVSQDGFLRIFDFD-  320 (636)
T ss_pred             C-cccccCCCCeeEEe-----------eeeccccCCccceeEe--ccccccceeEcCCCce--EEEEecCceEEEeecc-
Confidence            0 11111122222111           111 111133333332  2337889999999987  8888999999999998 


Q ss_pred             CCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECC
Q psy6859         170 NGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP  249 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  249 (261)
                      +.+++..++ ..-+...+++|+|||+||++|++|.-|.||.+..               .+.+..-++|+.+|..|+|.|
T Consensus       321 t~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e---------------rRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  321 TQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE---------------RRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHHHHHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEecc---------------ceEEEeccccccceeeEeecc
Confidence            888888887 7788999999999999999999999999999843               677888899999999999987

>KOG1963|consensus

Probab=99.75  E-value=5.4e-16  Score=123.62  Aligned_cols=229  Identities=13%  Similarity=0.202  Sum_probs=156.0

Q ss_pred             EEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCC---CEEEEEeCCCcEEEEEccccceeeeee
Q psy6859          10 VVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNG---TLLCTVASDKAMKVFDVINFDMINMIK   85 (261)
Q Consensus        10 ~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~v~~wd~~~~~~~~~~~   85 (261)
                      .|++ ++.++ +..+..|.||...++  +++..+.+|..++..+.+.|..   .++++++.||.|++||...+.+++++.
T Consensus        23 vfSnD~k~l~-~~~~~~V~VyS~~Tg--~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~   99 (792)
T KOG1963|consen   23 VFSNDAKFLF-LCTGNFVKVYSTATG--ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD   99 (792)
T ss_pred             ccccCCcEEE-EeeCCEEEEEecchH--hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence            4667 44444 455679999999998  8888999999999999998743   478899999999999999998888776


Q ss_pred             ccCcceeEEEE-----------eecCCceeeeeeec------------------------------------------CC
Q psy6859          86 LDFTPLTVECI-----------HYLGDAIPTAAVSD------------------------------------------QD  112 (261)
Q Consensus        86 ~~~~~~~~~~~-----------~~~~~~~~~~~~s~------------------------------------------~~  112 (261)
                      .+.........           ...++......++.                                          -.
T Consensus       100 ~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~  179 (792)
T KOG1963|consen  100 NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH  179 (792)
T ss_pred             cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence            44332211110           00000000000000                                          12


Q ss_pred             CCeEEEEEcCCCceeeEEe---ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC---CCccceeeccCcccCeE
Q psy6859         113 SSRVHIYDCKGNDMINMIK---LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG---NGTPLHVLDRLHTKPVV  186 (261)
Q Consensus       113 d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~v~  186 (261)
                      +..+.+|+...+. .....   ...+...+.+.+++|.+.+  ++++..||+|.+|.--.   .......+. -|...|+
T Consensus       180 ~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~--~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-WH~~~V~  255 (792)
T KOG1963|consen  180 MCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERY--LAAGDSDGRILVWRDFGSSDDSETCTLLH-WHHDEVN  255 (792)
T ss_pred             eeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccce--EEEeccCCcEEEEeccccccccccceEEE-ecccccc
Confidence            3344555555432 11110   0112224789999999986  88999999999997541   112234444 6888999


Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         187 LIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       187 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +++|+++|.+|++|+..+.+.+|.+.+               ++ .+-+..-.++|..+.+|||+.+.+....|+
T Consensus       256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T---------------~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN  314 (792)
T KOG1963|consen  256 SLSFSSDGAYLLSGGREGVLVLWQLET---------------GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDN  314 (792)
T ss_pred             eeEEecCCceEeecccceEEEEEeecC---------------CC-cccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence            999999999999999999999999965               33 223344578999999999999988877774

>KOG1272|consensus

Probab=99.74  E-value=1.5e-17  Score=123.77  Aligned_cols=215  Identities=12%  Similarity=0.125  Sum_probs=161.1

Q ss_pred             EEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeee
Q psy6859           7 THVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIK   85 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~   85 (261)
                      ..+.++. |.+++.|+.-|.+-.+|..+.  .+...+. -...|.++.|..+.+++|++ ....+.+|| ..|..+..++
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~--~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk  207 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTK--KLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLK  207 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccc--eeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehh
Confidence            4577888 899999999999999999987  5666665 33678999999888888775 556899999 4677666665


Q ss_pred             ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEE
Q psy6859          86 LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIY  165 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~  165 (261)
                      .+.. +..+.+-|..-.+++    ++..|.++.-|+.+++.+..+....  ..+..+.-+|-.-  ++-.|...|+|.+|
T Consensus       208 ~~~~-v~rLeFLPyHfLL~~----~~~~G~L~Y~DVS~GklVa~~~t~~--G~~~vm~qNP~Na--Vih~GhsnGtVSlW  278 (545)
T KOG1272|consen  208 RHIR-VARLEFLPYHFLLVA----ASEAGFLKYQDVSTGKLVASIRTGA--GRTDVMKQNPYNA--VIHLGHSNGTVSLW  278 (545)
T ss_pred             hcCc-hhhhcccchhheeee----cccCCceEEEeechhhhhHHHHccC--CccchhhcCCccc--eEEEcCCCceEEec
Confidence            4332 333334343333333    4899999999999999888877643  3566677778764  46678889999999


Q ss_pred             EccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeee
Q psy6859         166 DCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGL  245 (261)
Q Consensus       166 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  245 (261)
                      ... ..+++..+- .|.++|.+|++.++|+|+++.+.|..++|||++.               ...+.++.. ..+...+
T Consensus       279 SP~-skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~---------------~~ql~t~~t-p~~a~~l  340 (545)
T KOG1272|consen  279 SPN-SKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN---------------FYQLHTYRT-PHPASNL  340 (545)
T ss_pred             CCC-CcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeecc---------------ccccceeec-CCCcccc
Confidence            998 777777765 8999999999999999999999999999999964               222322222 2455677


Q ss_pred             eECCCCce
Q psy6859         246 SFSPDGNK  253 (261)
Q Consensus       246 ~~s~~~~~  253 (261)
                      ++|..|.+
T Consensus       341 s~SqkglL  348 (545)
T KOG1272|consen  341 SLSQKGLL  348 (545)
T ss_pred             ccccccce
Confidence            88876643

>KOG2321|consensus

Probab=99.73  E-value=1.4e-15  Score=116.35  Aligned_cols=236  Identities=17%  Similarity=0.256  Sum_probs=169.0

Q ss_pred             CCCCCeEEEEEcC-CCe-EEEecCCCeEEEEeccCCceeeeEEee--------------------------ccc------
Q psy6859           1 MHRSPITHVVVTK-TDF-VITASNDGHIKFWKKQEEGIEFVKHFR--------------------------SHL------   46 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~--------------------------~~~------   46 (261)
                      +|...-+.|..+| |+| +|+|..--.|++||+.+...+..+.+.                          -|.      
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            3667788999999 775 677888889999999764333222221                          111      


Q ss_pred             -c----ceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEc
Q psy6859          47 -G----VIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC  121 (261)
Q Consensus        47 -~----~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~  121 (261)
                       -    .-..++++.-.--|+.++....|+-+++..|+.+..++.......++.+.+....++++    +.+|.|..||.
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~G----t~~g~VEfwDp  204 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACG----TEDGVVEFWDP  204 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEec----ccCceEEEecc
Confidence             1    11233333211124444455578888999999999999888888888888777666555    88999999999


Q ss_pred             CCCceeeEEeecCC----c-----ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcC
Q psy6859         122 KGNDMINMIKLDFT----P-----LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP  192 (261)
Q Consensus       122 ~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  192 (261)
                      +....+..+....+    |     ..++++.|+.++..  +++|+.+|.+.|||++ ..+++..-.....-+|..+.|.+
T Consensus       205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~--~aVGts~G~v~iyDLR-a~~pl~~kdh~~e~pi~~l~~~~  281 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH--VAVGTSTGSVLIYDLR-ASKPLLVKDHGYELPIKKLDWQD  281 (703)
T ss_pred             hhhhhheeeecccccCCCccccccCcceEEEecCCcee--EEeeccCCcEEEEEcc-cCCceeecccCCccceeeecccc
Confidence            99887777654322    2     25899999999865  8999999999999999 88887766435567899999987


Q ss_pred             CC--CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         193 IY--QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       193 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      .+  ..|++. ....++|||-.               +++....+.. ...++.+++-|++-+++++-++
T Consensus       282 ~~~q~~v~S~-Dk~~~kiWd~~---------------~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~  334 (703)
T KOG2321|consen  282 TDQQNKVVSM-DKRILKIWDEC---------------TGKPMASIEP-TSDLNDFCFVPGSGMFFTANES  334 (703)
T ss_pred             cCCCceEEec-chHHhhhcccc---------------cCCceeeccc-cCCcCceeeecCCceEEEecCC
Confidence            63  355554 46789999974               4666665554 4558999999998888887554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=8e-15  Score=115.54  Aligned_cols=217  Identities=12%  Similarity=0.051  Sum_probs=141.3

Q ss_pred             CCCeEEEEEcC-CCeEEEec---CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCC--cEEEEEc
Q psy6859           3 RSPITHVVVTK-TDFVITAS---NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDK--AMKVFDV   75 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg--~v~~wd~   75 (261)
                      ...+.+.+|+| |+.|+..+   .+..|.+|++.++..+.+..+.+   .+....|+|||+.|+.. +.+|  .|.+||+
T Consensus       198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            45788999999 88777543   34579999998764344444443   34568999999988765 4454  5888999


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC--eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS--RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
                      .+++...... .........++++++.++..   ...++  .|.++|+.+++.. .+...  ........|+|++..+++
T Consensus       275 ~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~---s~~~g~~~Iy~~d~~~g~~~-~lt~~--~~~~~~~~~SpDG~~Ia~  347 (429)
T PRK03629        275 ASGQIRQVTD-GRSNNTEPTWFPDSQNLAYT---SDQAGRPQVYKVNINGGAPQ-RITWE--GSQNQDADVSSDGKFMVM  347 (429)
T ss_pred             CCCCEEEccC-CCCCcCceEECCCCCEEEEE---eCCCCCceEEEEECCCCCeE-EeecC--CCCccCEEECCCCCEEEE
Confidence            8776544332 22334566788898877655   12333  4555577766543 33222  223456889999987433


Q ss_pred             EEecCC--CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCe---EEEeecccccccCCeeeeeeccc
Q psy6859         154 VSDQDS--SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGI---LEYWSGYKQEFKFPKCVHFESKL  228 (261)
Q Consensus       154 ~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~  228 (261)
                      + ...+  ..|.+||+. ++. ...+. . ........|+|||++|+.++.++.   +.++++.                
T Consensus       348 ~-~~~~g~~~I~~~dl~-~g~-~~~Lt-~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~----------------  406 (429)
T PRK03629        348 V-SSNGGQQHIAKQDLA-TGG-VQVLT-D-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD----------------  406 (429)
T ss_pred             E-EccCCCceEEEEECC-CCC-eEEeC-C-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC----------------
Confidence            3 3323  458889987 554 33443 1 122346789999999988887664   5566653                


Q ss_pred             ccceeecCCCccceeeeeECCC
Q psy6859         229 DTDLFEFAKNKTYPSGLSFSPD  250 (261)
Q Consensus       229 ~~~~~~~~~~~~~v~~~~~s~~  250 (261)
                      ++....+..|.+.+...+|+|-
T Consensus       407 G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        407 GRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCCeEECccCCCCcCCcccCCC
Confidence            5556677778888999999983

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.2e-14  Score=113.07  Aligned_cols=209  Identities=10%  Similarity=0.036  Sum_probs=131.4

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC---CCcEEEEEccccceeeeeeccCcceeEEEEeecC
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS---DKAMKVFDVINFDMINMIKLDFTPLTVECIHYLG  100 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (261)
                      ..|.+||.+..+   .+.+..+...+...+|+|||+.|+..+.   +..+.+|++.+++.......... .....++|++
T Consensus       179 ~~l~~~d~dg~~---~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG  254 (429)
T PRK03629        179 YELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH-NGAPAFSPDG  254 (429)
T ss_pred             eeEEEEcCCCCC---CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC-cCCeEECCCC
Confidence            368888887642   2233446678999999999999886542   35799999988764433222222 3346788999


Q ss_pred             CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEE--EccCCCccceeec
Q psy6859         101 DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIY--DCKGNGTPLHVLD  178 (261)
Q Consensus       101 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~--d~~~~~~~~~~~~  178 (261)
                      +.++.. .+...+..|.+||+++++......   ....+....|+|++..+++ +...++...+|  |+. ++. ...+.
T Consensus       255 ~~La~~-~~~~g~~~I~~~d~~tg~~~~lt~---~~~~~~~~~wSPDG~~I~f-~s~~~g~~~Iy~~d~~-~g~-~~~lt  327 (429)
T PRK03629        255 SKLAFA-LSKTGSLNLYVMDLASGQIRQVTD---GRSNNTEPTWFPDSQNLAY-TSDQAGRPQVYKVNIN-GGA-PQRIT  327 (429)
T ss_pred             CEEEEE-EcCCCCcEEEEEECCCCCEEEccC---CCCCcCceEECCCCCEEEE-EeCCCCCceEEEEECC-CCC-eEEee
Confidence            877654 111223469999999876544332   2234578899999986333 33334444454  554 333 34443


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEcCC---CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEE
Q psy6859         179 RLHTKPVVLIKFNPIYQVVVSVDKA---GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV  255 (261)
Q Consensus       179 ~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  255 (261)
                       ..........|+|||++|+..+.+   ..|.+||+.++               + ...+.. ........|+|||++|+
T Consensus       328 -~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g---------------~-~~~Lt~-~~~~~~p~~SpDG~~i~  389 (429)
T PRK03629        328 -WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---------------G-VQVLTD-TFLDETPSIAPNGTMVI  389 (429)
T ss_pred             -cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC---------------C-eEEeCC-CCCCCCceECCCCCEEE
Confidence             344455678999999988765533   35778887542               2 122221 11234678999999999


Q ss_pred             EeecCC
Q psy6859         256 TISMDR  261 (261)
Q Consensus       256 s~~~Dg  261 (261)
                      .++.|+
T Consensus       390 ~~s~~~  395 (429)
T PRK03629        390 YSSSQG  395 (429)
T ss_pred             EEEcCC
Confidence            988764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=3.5e-14  Score=112.48  Aligned_cols=207  Identities=7%  Similarity=0.015  Sum_probs=133.0

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC---CCcEEEEEccccceeeeeeccCcceeEEEEeecC
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS---DKAMKVFDVINFDMINMIKLDFTPLTVECIHYLG  100 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (261)
                      ..|.++|.+..   ..+.+..|...+...+|+|||+.|+..+.   +..|.+||+.+++.... ...........+++++
T Consensus       182 ~~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        182 KRLAIMDQDGA---NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV-GNFPGMTFAPRFSPDG  257 (435)
T ss_pred             eEEEEECCCCC---CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe-ecCCCcccCcEECCCC
Confidence            47888887654   33455567788999999999999887763   46899999988765432 2222234456788898


Q ss_pred             CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC--CeEEEEEccCCCccceeec
Q psy6859         101 DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS--SHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       101 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~  178 (261)
                      +.++.. .+......|.+||+.+++... +..  .+.......|+|++..+++.+ ..+  ..|+++|+. .++ ...+.
T Consensus       258 ~~la~~-~~~~g~~~Iy~~d~~~~~~~~-Lt~--~~~~~~~~~~spDG~~i~f~s-~~~g~~~Iy~~d~~-g~~-~~~lt  330 (435)
T PRK05137        258 RKVVMS-LSQGGNTDIYTMDLRSGTTTR-LTD--SPAIDTSPSYSPDGSQIVFES-DRSGSPQLYVMNAD-GSN-PRRIS  330 (435)
T ss_pred             CEEEEE-EecCCCceEEEEECCCCceEE-ccC--CCCccCceeEcCCCCEEEEEE-CCCCCCeEEEEECC-CCC-eEEee
Confidence            876543 111223458888998876533 322  233456689999998744333 233  368888875 443 34443


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEcCC---CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEE
Q psy6859         179 RLHTKPVVLIKFNPIYQVVVSVDKA---GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV  255 (261)
Q Consensus       179 ~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  255 (261)
                       .....+....|+|+|++|+....+   ..|.+||+..+                ....+.. ...+..+.|+|||+.|+
T Consensus       331 -~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~----------------~~~~lt~-~~~~~~p~~spDG~~i~  392 (435)
T PRK05137        331 -FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS----------------GERILTS-GFLVEGPTWAPNGRVIM  392 (435)
T ss_pred             -cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC----------------ceEeccC-CCCCCCCeECCCCCEEE
Confidence             344556778999999988776533   35777776431                1222221 22467889999999988


Q ss_pred             Eeec
Q psy6859         256 TISM  259 (261)
Q Consensus       256 s~~~  259 (261)
                      ..+.
T Consensus       393 ~~~~  396 (435)
T PRK05137        393 FFRQ  396 (435)
T ss_pred             EEEc
Confidence            7654

>KOG4227|consensus

Probab=99.70  E-value=1.4e-15  Score=111.60  Aligned_cols=168  Identities=14%  Similarity=0.126  Sum_probs=125.9

Q ss_pred             EEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc------ceeeeeeccC-cceeEEEEeecCCceeeeeeecCC
Q psy6859          40 KHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF------DMINMIKLDF-TPLTVECIHYLGDAIPTAAVSDQD  112 (261)
Q Consensus        40 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~  112 (261)
                      +.+.+|.+.|+++.|+.++++|++|+.|..+++|++...      +++.....+. ..+.++.+......+    ++|..
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~----~SG~~  125 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFL----YSGER  125 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeE----ecCCC
Confidence            345679999999999999999999999999999998642      3333322222 334444444444433    45699


Q ss_pred             CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEc
Q psy6859         113 SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFN  191 (261)
Q Consensus       113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~  191 (261)
                      +++|.+.|+++.+.+..+........|..+..+|....  +++.+.++.|.+||.+....++..+- .........+.|+
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~--~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~  203 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNT--LIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH  203 (609)
T ss_pred             cceeEeeecccceeeeeecccCcccceeecccCCCCce--EEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence            99999999999999888887777778999999998654  77778899999999993333443332 1345567888999


Q ss_pred             CCCC-EEEEEcCCCeEEEeeccc
Q psy6859         192 PIYQ-VVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       192 ~~~~-~l~~~~~dg~i~iwd~~~  213 (261)
                      |... +|++.+..+-+.+||.+.
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRM  226 (609)
T ss_pred             CCCceeEEeccccCCCCceeecc
Confidence            9765 678888888899999864

>KOG1587|consensus

Probab=99.70  E-value=9.4e-15  Score=115.60  Aligned_cols=216  Identities=12%  Similarity=0.115  Sum_probs=145.4

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccccce--eeeee----ccCcceeEEEE
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFDM--INMIK----LDFTPLTVECI   96 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~----~~~~~~~~~~~   96 (261)
                      +.+.+|++... ..+...+. -...|++++|+| +..+++.|..+|+|.+||++.+..  ...+.    .+..+...+.+
T Consensus       222 ~~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCC-CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            47999999875 35555555 457899999998 667888888999999999987654  22222    22233333333


Q ss_pred             eecC--CceeeeeeecCCCCeEEEEEcCCCce-eeEEe----e-----cCCcceEEEEEEeCCCCceEEEEecCCCeEEE
Q psy6859          97 HYLG--DAIPTAAVSDQDSSRVHIYDCKGNDM-INMIK----L-----DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHI  164 (261)
Q Consensus        97 ~~~~--~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  164 (261)
                      ..+.  ..++++    +.||.|..|+++.-.. ...+.    .     ......++++.|.+..... ++.|+++|.|.-
T Consensus       300 ~~~~~~~~f~s~----ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~-FiVGTe~G~v~~  374 (555)
T KOG1587|consen  300 LQNEHNTEFFSL----SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH-FIVGTEEGKVYK  374 (555)
T ss_pred             eccCCCCceEEE----ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce-EEEEcCCcEEEE
Confidence            3322  224444    8899999998875432 11111    1     0123467889998877654 788899999887


Q ss_pred             EEccCC---C----ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         165 YDCKGN---G----TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       165 ~d~~~~---~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      -+....   .    +....+. .|.++|+.+.++|-+..++..+.|.+++||....              ...++..+..
T Consensus       375 ~~r~g~~~~~~~~~~~~~~~~-~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~--------------~~~Pl~~~~~  439 (555)
T KOG1587|consen  375 GCRKGYTPAPEVSYKGHSTFI-THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV--------------IASPLLSLDS  439 (555)
T ss_pred             EeccCCccccccccccccccc-ccCcceEeeecCCCccceeeeeccceeEeccccC--------------CCCcchhhhh
Confidence            443311   1    1233443 7899999999999887554444499999998741              3567777888


Q ss_pred             CccceeeeeECCCCc-eEEEeecCC
Q psy6859         238 NKTYPSGLSFSPDGN-KFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~-~l~s~~~Dg  261 (261)
                      +...|++++|||-.. .++++..||
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G  464 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDG  464 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCC
Confidence            888899999999764 455555454

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.4e-14  Score=112.90  Aligned_cols=208  Identities=13%  Similarity=0.096  Sum_probs=127.7

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC---CcEEEEEccccceeeeeeccCcceeEEEEeecC
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD---KAMKVFDVINFDMINMIKLDFTPLTVECIHYLG  100 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (261)
                      ..|.++|.+..   ..+.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++........ .......+++++
T Consensus       176 ~~L~~~D~dG~---~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG  251 (427)
T PRK02889        176 YQLQISDADGQ---NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDG  251 (427)
T ss_pred             cEEEEECCCCC---CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCC
Confidence            45667776543   233444567789999999999999877643   35999999888654432222 223456788898


Q ss_pred             CceeeeeeecCCCCeEEEE--EcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec
Q psy6859         101 DAIPTAAVSDQDSSRVHIY--DCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       101 ~~~~~~~~s~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  178 (261)
                      +.++..   .+.++...||  |+.++. ...+..  .........|+||+..+++ +...++...+|.+...+.....+.
T Consensus       252 ~~la~~---~~~~g~~~Iy~~d~~~~~-~~~lt~--~~~~~~~~~wSpDG~~l~f-~s~~~g~~~Iy~~~~~~g~~~~lt  324 (427)
T PRK02889        252 RTLAVA---LSRDGNSQIYTVNADGSG-LRRLTQ--SSGIDTEPFFSPDGRSIYF-TSDRGGAPQIYRMPASGGAAQRVT  324 (427)
T ss_pred             CEEEEE---EccCCCceEEEEECCCCC-cEECCC--CCCCCcCeEEcCCCCEEEE-EecCCCCcEEEEEECCCCceEEEe
Confidence            877542   2556665555  555554 333322  2223456789999987433 333456666666542222233332


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEcCCC---eEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEE
Q psy6859         179 RLHTKPVVLIKFNPIYQVVVSVDKAG---ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV  255 (261)
Q Consensus       179 ~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  255 (261)
                       ..........|+|+|++|+..+.++   .|.+||+.++               +. ..+... .......|+|||+.|+
T Consensus       325 -~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g---------------~~-~~lt~~-~~~~~p~~spdg~~l~  386 (427)
T PRK02889        325 -FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG---------------QV-TALTDT-TRDESPSFAPNGRYIL  386 (427)
T ss_pred             -cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC---------------Ce-EEccCC-CCccCceECCCCCEEE
Confidence             2223344678999999998766544   5899998542               22 222221 2346789999999998


Q ss_pred             EeecC
Q psy6859         256 TISMD  260 (261)
Q Consensus       256 s~~~D  260 (261)
                      .++.+
T Consensus       387 ~~~~~  391 (427)
T PRK02889        387 YATQQ  391 (427)
T ss_pred             EEEec
Confidence            88765

>KOG1310|consensus

Probab=99.70  E-value=5.7e-16  Score=117.99  Aligned_cols=173  Identities=12%  Similarity=0.138  Sum_probs=121.8

Q ss_pred             eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeec-cCcceeEEEEee-cCCceeeeeeecCCCC
Q psy6859          37 EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKL-DFTPLTVECIHY-LGDAIPTAAVSDQDSS  114 (261)
Q Consensus        37 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~s~~~d~  114 (261)
                      .....+.||++.|+++.|+.+|.+|++|+.|-.+.|||.-..+.+..+.. +...+.+..+-| .++.++   ++|..|.
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv---~sgAgDk  117 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIV---LSGAGDK  117 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEE---EeccCcc
Confidence            44567889999999999999999999999999999999988888777763 333444444444 333332   3468999


Q ss_pred             eEEEEEcCCCc--------eeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccce---------ee
Q psy6859         115 RVHIYDCKGND--------MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLH---------VL  177 (261)
Q Consensus       115 ~i~i~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~---------~~  177 (261)
                      .|+++|+...+        .........+...+..++..|++... +.++++||+|+-||++..-.+-.         .+
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Pht-fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny  196 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHT-FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY  196 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCce-EEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence            99999998521        11111112234466777888888653 78889999999999993211111         11


Q ss_pred             ccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccc
Q psy6859         178 DRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       178 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  214 (261)
                      . ..--...++.++|... +|++|+.|-..++||.+..
T Consensus       197 ~-~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~  233 (758)
T KOG1310|consen  197 N-PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV  233 (758)
T ss_pred             c-hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh
Confidence            1 1223467889999765 7899999999999996543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=2.2e-14  Score=113.45  Aligned_cols=208  Identities=10%  Similarity=0.042  Sum_probs=131.4

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC---CcEEEEEccccceeeeeeccCcceeEEEEeecC
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD---KAMKVFDVINFDMINMIKLDFTPLTVECIHYLG  100 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (261)
                      ..|.+||.+..   ..+.+..+...+...+|+||++.|+..+.+   ..|.+||+.+++........ .......+++++
T Consensus       184 ~~l~i~D~~g~---~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG  259 (433)
T PRK04922        184 YALQVADSDGY---NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-GINGAPSFSPDG  259 (433)
T ss_pred             EEEEEECCCCC---CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-CCccCceECCCC
Confidence            46888888654   233455567789999999999999987743   46999999877654332222 223356788888


Q ss_pred             CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe--EEEEEccCCCccceeec
Q psy6859         101 DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH--VHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       101 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--i~i~d~~~~~~~~~~~~  178 (261)
                      +.++.. .+...+..|.+||+.+++... +..  ........+|+|++..+ +++...++.  |+++|+. +++ ...+.
T Consensus       260 ~~l~~~-~s~~g~~~Iy~~d~~~g~~~~-lt~--~~~~~~~~~~spDG~~l-~f~sd~~g~~~iy~~dl~-~g~-~~~lt  332 (433)
T PRK04922        260 RRLALT-LSRDGNPEIYVMDLGSRQLTR-LTN--HFGIDTEPTWAPDGKSI-YFTSDRGGRPQIYRVAAS-GGS-AERLT  332 (433)
T ss_pred             CEEEEE-EeCCCCceEEEEECCCCCeEE-Ccc--CCCCccceEECCCCCEE-EEEECCCCCceEEEEECC-CCC-eEEee
Confidence            877543 222334579999999886433 322  22234567899999863 333333444  6666665 443 33332


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEcCCC---eEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEE
Q psy6859         179 RLHTKPVVLIKFNPIYQVVVSVDKAG---ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV  255 (261)
Q Consensus       179 ~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  255 (261)
                       ........++|+|+|++|+..+.++   .|.+||+.++               +.. .+. +........|+|||++|+
T Consensus       333 -~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g---------------~~~-~Lt-~~~~~~~p~~spdG~~i~  394 (433)
T PRK04922        333 -FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG---------------SVR-TLT-PGSLDESPSFAPNGSMVL  394 (433)
T ss_pred             -cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC---------------CeE-ECC-CCCCCCCceECCCCCEEE
Confidence             2333445689999999887654332   5889998542               222 222 222345679999999988


Q ss_pred             EeecC
Q psy6859         256 TISMD  260 (261)
Q Consensus       256 s~~~D  260 (261)
                      ..+.+
T Consensus       395 ~~s~~  399 (433)
T PRK04922        395 YATRE  399 (433)
T ss_pred             EEEec
Confidence            77654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.6e-14  Score=113.09  Aligned_cols=218  Identities=15%  Similarity=0.084  Sum_probs=137.7

Q ss_pred             CCCCeEEEEEcC-CCeEEEecC---CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCC--cEEEEE
Q psy6859           2 HRSPITHVVVTK-TDFVITASN---DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDK--AMKVFD   74 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg--~v~~wd   74 (261)
                      |...+.+.+|+| ++.|+..+.   +..|.+|++.++..+.+   ....+......|+|||+.|+ +.+.+|  .|.+||
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d  278 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD  278 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence            456788899999 888887763   34699999987633333   23334456789999998775 445555  599999


Q ss_pred             ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC--eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS--RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      +.+++... +..+........++++++.++..   ...++  .|.++|+.+++... +...  .......+|+|++...+
T Consensus       279 ~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~---sd~~g~~~iy~~dl~~g~~~~-lt~~--g~~~~~~~~SpDG~~Ia  351 (433)
T PRK04922        279 LGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFT---SDRGGRPQIYRVAASGGSAER-LTFQ--GNYNARASVSPDGKKIA  351 (433)
T ss_pred             CCCCCeEE-CccCCCCccceEECCCCCEEEEE---ECCCCCceEEEEECCCCCeEE-eecC--CCCccCEEECCCCCEEE
Confidence            98776443 33222223445778888877655   12334  46777777765432 2222  22334689999998744


Q ss_pred             EEEecC-CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCC---CeEEEeecccccccCCeeeeeeccc
Q psy6859         153 AVSDQD-SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA---GILEYWSGYKQEFKFPKCVHFESKL  228 (261)
Q Consensus       153 ~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~  228 (261)
                      +.+... ...|.+||+. +++.. .+.  +........|+|||++|+..+.+   +.|.++++.                
T Consensus       352 ~~~~~~~~~~I~v~d~~-~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~----------------  411 (433)
T PRK04922        352 MVHGSGGQYRIAVMDLS-TGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD----------------  411 (433)
T ss_pred             EEECCCCceeEEEEECC-CCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC----------------
Confidence            433321 2369999987 65543 443  22344567999999987665542   346666653                


Q ss_pred             ccceeecCCCccceeeeeECC
Q psy6859         229 DTDLFEFAKNKTYPSGLSFSP  249 (261)
Q Consensus       229 ~~~~~~~~~~~~~v~~~~~s~  249 (261)
                      +.....+..+.+.+...+|+|
T Consensus       412 g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        412 GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCceEEcccCCCCCCCCccCC
Confidence            344555555566778888987

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.68  E-value=2e-13  Score=104.86  Aligned_cols=188  Identities=12%  Similarity=0.098  Sum_probs=130.7

Q ss_pred             EEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEE
Q psy6859          17 VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECI   96 (261)
Q Consensus        17 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~   96 (261)
                      +++-..++.|.+.|..+.  +.+..+......-..+.|+||++++++++.||.|.++|+.+++.+.+++....+ ....+
T Consensus         9 ~V~~~~~~~v~viD~~t~--~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-~~i~~   85 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATN--KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-RGIAV   85 (369)
T ss_dssp             EEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE-EEEEE
T ss_pred             EEEecCCCEEEEEECCCC--eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc-ceEEE
Confidence            356677899999999887  778888755444456789999999999999999999999999999999877664 45788


Q ss_pred             eecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC-----CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC
Q psy6859          97 HYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF-----TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG  171 (261)
Q Consensus        97 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  171 (261)
                      +++++++++.   ....+.+.++|.++.++++.+....     ...++..+..+|.... ++++--+.+.|.+.|.. ..
T Consensus        86 s~DG~~~~v~---n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~-fVv~lkd~~~I~vVdy~-d~  160 (369)
T PF02239_consen   86 SPDGKYVYVA---NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE-FVVNLKDTGEIWVVDYS-DP  160 (369)
T ss_dssp             --TTTEEEEE---EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-EEEEETTTTEEEEEETT-TS
T ss_pred             cCCCCEEEEE---ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-EEEEEccCCeEEEEEec-cc
Confidence            8999987665   3468999999999999998876542     2236677777777764 35555666889888987 43


Q ss_pred             ccc--eeeccCcccCeEEEEEcCCCCEEEE-EcCCCeEEEeecccc
Q psy6859         172 TPL--HVLDRLHTKPVVLIKFNPIYQVVVS-VDKAGILEYWSGYKQ  214 (261)
Q Consensus       172 ~~~--~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~  214 (261)
                      +.+  ..+  ..........|+|++++++. ...+..|-++|..++
T Consensus       161 ~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  161 KNLKVTTI--KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             SCEEEEEE--E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             cccceeee--cccccccccccCcccceeeecccccceeEEEeeccc
Confidence            333  233  34566788999999998755 456678888887765

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=7.1e-15  Score=102.90  Aligned_cols=123  Identities=20%  Similarity=0.341  Sum_probs=90.3

Q ss_pred             CeEEEEEcCC-CceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcC
Q psy6859         114 SRVHIYDCKG-NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP  192 (261)
Q Consensus       114 ~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  192 (261)
                      +...+|.++. ......+..... ..|..++|+|++..++++.|..+..|.+||++  .+++..+.   ...++.+.|+|
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~-~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~~---~~~~n~i~wsP  110 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKE-GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSFG---TQPRNTISWSP  110 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCC-CceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEeec---CCCceEEEECC
Confidence            3455555532 234555554432 35999999999998777778778899999995  56666663   46778999999


Q ss_pred             CCCEEEEEcC---CCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         193 IYQVVVSVDK---AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       193 ~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      +|++|++++.   .|.|.+||+++               .+.+.... | ..++.++|+|||++|+++..
T Consensus       111 ~G~~l~~~g~~n~~G~l~~wd~~~---------------~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  111 DGRFLVLAGFGNLNGDLEFWDVRK---------------KKKISTFE-H-SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCC---------------CEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence            9999988864   46799999953               44454443 2 34789999999999999864

>KOG2139|consensus

Probab=99.68  E-value=3.7e-14  Score=103.00  Aligned_cols=237  Identities=13%  Similarity=0.090  Sum_probs=151.1

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee-ccccceeEEEEeeC-CCEEEEEeCCCcEEEEEcccc---
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVINF---   78 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~~---   78 (261)
                      .+..++|++ -..+|++..|-+|++|+-...   ....++ ..+..|++++|-|. ++.|+.|+.. -|.+|.....   
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst---~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~  175 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST---CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA  175 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCC---CCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence            567889998 667899999999999997663   222333 23467999999994 4566666665 5889986421   


Q ss_pred             -cee--------eeee-ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCC
Q psy6859          79 -DMI--------NMIK-LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDA  148 (261)
Q Consensus        79 -~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (261)
                       ..+        +.++ ....++..+.+.+++..+...   .-.|..|.|||..++..+....  .....+.-+.|+||+
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tA---S~gsssi~iWdpdtg~~~pL~~--~glgg~slLkwSPdg  250 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTA---SFGSSSIMIWDPDTGQKIPLIP--KGLGGFSLLKWSPDG  250 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCCEEeec---ccCcceEEEEcCCCCCcccccc--cCCCceeeEEEcCCC
Confidence             111        1112 123567788888888776665   2368899999999987655542  244577889999999


Q ss_pred             CceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEE-EEcCCCeEEEeeccccc--ccCCeeeeee
Q psy6859         149 IPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVV-SVDKAGILEYWSGYKQE--FKFPKCVHFE  225 (261)
Q Consensus       149 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~--~~~~~~~~~~  225 (261)
                      .+  +.+++-|+..++|.........+-.  ...+.|...+|+|+|++|+ +.+..  -++|.+.-..  ..+..  .-.
T Consensus       251 d~--lfaAt~davfrlw~e~q~wt~erw~--lgsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~--~~~  322 (445)
T KOG2139|consen  251 DV--LFAATCDAVFRLWQENQSWTKERWI--LGSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLR--PQS  322 (445)
T ss_pred             CE--EEEecccceeeeehhcccceeccee--ccCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccC--ccc
Confidence            87  5666679999999765233333333  3445899999999999764 44433  3455543211  00000  000


Q ss_pred             cccccceeec------CC---CccceeeeeECCCCceEEEee
Q psy6859         226 SKLDTDLFEF------AK---NKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       226 ~~~~~~~~~~------~~---~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      .+.-..+..+      .+   -.+++.+++|.|.|.+||+.-
T Consensus       323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence            0000111111      11   246789999999999999753

>KOG1334|consensus

Probab=99.67  E-value=2.6e-15  Score=112.70  Aligned_cols=237  Identities=13%  Similarity=0.162  Sum_probs=158.2

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      +|.+.|+.|.|+. |..|++|+.|..|.+||..... ..+.-..+|...|....|-|  +.+-+++++.||.+++=.+..
T Consensus       140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~  218 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE  218 (559)
T ss_pred             CCCCccceeeecccCceeeccCccceEEeehhhccC-cccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence            5999999999999 9999999999999999998752 33444567999999889987  456899999999999887653


Q ss_pred             cceee---eeeccCcceeEEEEeecCC-ceeeeeeecCCCCeEEEEEcCCCceeeEE-----------------------
Q psy6859          78 FDMIN---MIKLDFTPLTVECIHYLGD-AIPTAAVSDQDSSRVHIYDCKGNDMINMI-----------------------  130 (261)
Q Consensus        78 ~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-----------------------  130 (261)
                      ...+.   .+..+..++..+.+.|... .+.+    ++.|+.+.-+|++...+...+                       
T Consensus       219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S----~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLS----CGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             ccceecceecccccCccceeeecCCCCCcccc----cccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence            32222   1222333344444433221 1222    244444444444432211110                       


Q ss_pred             --------------------------------e----ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC-CC--
Q psy6859         131 --------------------------------K----LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG-NG--  171 (261)
Q Consensus       131 --------------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~--  171 (261)
                                                      .    ....+..|+++.|+.++..  +++.-.|-.|+++.-.. .+  
T Consensus       295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE--lLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE--LLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc--eeeeecccceEEeccccccCCC
Confidence                                            0    0123557888888866554  33444577788885431 11  


Q ss_pred             --------cccee-eccCccc--CeEEE-EEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         172 --------TPLHV-LDRLHTK--PVVLI-KFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       172 --------~~~~~-~~~~~~~--~v~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                              ..++. ++ +|.+  .|..+ -|-|...|+++|+.=|.|.||+-               ++++.++-+.+..
T Consensus       373 p~~~s~~~~~~k~vYK-GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K---------------~t~eii~~MegDr  436 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYK-GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK---------------KTGEIIRFMEGDR  436 (559)
T ss_pred             CCCCcchhhccchhhc-ccccccccceeeeccCccceEEecCccceEEEEec---------------chhHHHHHhhccc
Confidence                    12222 44 6643  45566 45688899999999999999997               5578888888866


Q ss_pred             cceeeeeECCCCceEEEeecC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      ..|+|+.=+|--..||++|-|
T Consensus       437 ~VVNCLEpHP~~PvLAsSGid  457 (559)
T KOG1334|consen  437 HVVNCLEPHPHLPVLASSGID  457 (559)
T ss_pred             ceEeccCCCCCCchhhccCCc
Confidence            799999999999999998866

>KOG3881|consensus

Probab=99.67  E-value=1.9e-14  Score=105.28  Aligned_cols=188  Identities=12%  Similarity=0.120  Sum_probs=136.2

Q ss_pred             CeEEEecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEeeCCC-EEEEEeCC--CcEEEEEccccceeeeeeccC-
Q psy6859          15 DFVITASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNYNGT-LLCTVASD--KAMKVFDVINFDMINMIKLDF-   88 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d--g~v~~wd~~~~~~~~~~~~~~-   88 (261)
                      ..|++|-.+|.+.+|..+.+.  ......+..+ ..+..+.-.+... .+++|+..  ..+.+||+.+.+.+.+-+... 
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn  194 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPN  194 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCC
Confidence            468888999999999988432  2344444444 4556666666444 55568888  889999998876555433111 


Q ss_pred             ------cceeEEEEe--ec--CCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          89 ------TPLTVECIH--YL--GDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        89 ------~~~~~~~~~--~~--~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                            -|+....+.  +.  ...++++    +.-+.+++||.+.+ +++..+..  ....+.++...|.+..  +++|.
T Consensus       195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~----T~~hqvR~YDt~~qRRPV~~fd~--~E~~is~~~l~p~gn~--Iy~gn  266 (412)
T KOG3881|consen  195 DRLGLRVPVWITDIRFLEGSPNYKFATI----TRYHQVRLYDTRHQRRPVAQFDF--LENPISSTGLTPSGNF--IYTGN  266 (412)
T ss_pred             ccccceeeeeeccceecCCCCCceEEEE----ecceeEEEecCcccCcceeEecc--ccCcceeeeecCCCcE--EEEec
Confidence                  122222221  22  3344444    89999999999855 45555554  4557788888898876  88888


Q ss_pred             CCCeEEEEEccCCCcccee-eccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         158 DSSHVHIYDCKGNGTPLHV-LDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .-+.+..||++ .++.+.. +. +..+.|++|..+|.+++||+++-|..++|+|+++
T Consensus       267 ~~g~l~~FD~r-~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  267 TKGQLAKFDLR-GGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ccchhheeccc-CceeeccccC-CccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            89999999999 7777766 66 8899999999999999999999999999999965

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1e-13  Score=109.84  Aligned_cols=220  Identities=10%  Similarity=-0.012  Sum_probs=137.8

Q ss_pred             CCCCeEEEEEcC-CCeEEEecC---CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCCc--EEEEE
Q psy6859           2 HRSPITHVVVTK-TDFVITASN---DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKA--MKVFD   74 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~--v~~wd   74 (261)
                      |...+.+.+|+| ++.|+..+.   +..|.+|++.++..   ..+..+.+.+....|+|||+.|+ +.+.++.  |.+||
T Consensus       200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  276 (435)
T PRK05137        200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD  276 (435)
T ss_pred             CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence            567899999999 888777653   46899999987632   23444556778899999998775 5555555  77778


Q ss_pred             ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      +.+++... +...........++++++.++... .......|.++|+.+++... +..  .........|+|++..+++.
T Consensus       277 ~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s-~~~g~~~Iy~~d~~g~~~~~-lt~--~~~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        277 LRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFES-DRSGSPQLYVMNADGSNPRR-ISF--GGGRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             CCCCceEE-ccCCCCccCceeEcCCCCEEEEEE-CCCCCCeEEEEECCCCCeEE-eec--CCCcccCeEECCCCCEEEEE
Confidence            87766543 332333344567888888776541 01223478888987765433 322  12344567899999874443


Q ss_pred             Eec-CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcC-C-----CeEEEeecccccccCCeeeeeecc
Q psy6859         155 SDQ-DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK-A-----GILEYWSGYKQEFKFPKCVHFESK  227 (261)
Q Consensus       155 ~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~  227 (261)
                      ... .+..|.+||+. .+ ....+.  ....+..+.|+|||+.|+..+. .     ..+.++|+..              
T Consensus       352 ~~~~~~~~i~~~d~~-~~-~~~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g--------------  413 (435)
T PRK05137        352 KQGGGQFSIGVMKPD-GS-GERILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG--------------  413 (435)
T ss_pred             EcCCCceEEEEEECC-CC-ceEecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC--------------
Confidence            321 12468888875 33 334443  2335678899999998765443 2     2566777642              


Q ss_pred             cccceeecCCCccceeeeeECCC
Q psy6859         228 LDTDLFEFAKNKTYPSGLSFSPD  250 (261)
Q Consensus       228 ~~~~~~~~~~~~~~v~~~~~s~~  250 (261)
                        .....+. ....+...+|+|-
T Consensus       414 --~~~~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        414 --RNEREVP-TPGDASDPAWSPL  433 (435)
T ss_pred             --CceEEcc-CCCCccCcccCCC
Confidence              2223333 2345677888873

>KOG1240|consensus

Probab=99.66  E-value=2.5e-14  Score=118.39  Aligned_cols=176  Identities=15%  Similarity=0.198  Sum_probs=125.9

Q ss_pred             EeccCCceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEcccc-------ceeeeeeccCcceeEEEEeecC
Q psy6859          29 WKKQEEGIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVINF-------DMINMIKLDFTPLTVECIHYLG  100 (261)
Q Consensus        29 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~~-------~~~~~~~~~~~~~~~~~~~~~~  100 (261)
                      |++..   ..+..+..|...+..++.++. +.++++|+.||+|++|+...-       +...++.........+...+.+
T Consensus      1034 W~p~G---~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPRG---ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred             CCccc---eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence            66554   678888899999999998865 489999999999999998642       1222333345556666666677


Q ss_pred             CceeeeeeecCCCCeEEEEEcCCCc-------eeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc
Q psy6859         101 DAIPTAAVSDQDSSRVHIYDCKGND-------MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP  173 (261)
Q Consensus       101 ~~~~~~~~s~~~d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  173 (261)
                      +.++..    +.||.|++.++...+       .......+..+..+..-+|.......+++.+...+.|..||.+ ....
T Consensus      1111 ~~~Av~----t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r-~~~~ 1185 (1431)
T KOG1240|consen 1111 DQFAVS----TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR-MRHD 1185 (1431)
T ss_pred             CeEEEE----cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch-hhhh
Confidence            777666    899999999987621       1111222223333334444443333357777888999999999 6665


Q ss_pred             ceeec-cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         174 LHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       174 ~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      ...++ ....+.|++++.+|.+.++++|...|.+.+||++
T Consensus      1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred             HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEee
Confidence            55554 2346789999999999999999999999999995

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.66  E-value=3.8e-13  Score=103.32  Aligned_cols=227  Identities=12%  Similarity=0.122  Sum_probs=137.4

Q ss_pred             EEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEccccceeeeee
Q psy6859           8 HVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVINFDMINMIK   85 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~~~~~~~~~   85 (261)
                      .+.|+| ++++++++.||.|.++|+.+.  +.+.+++... ...++++++||++++++. ..+.+.++|.++.+.++.+.
T Consensus        41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   41 GLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            467889 888988999999999999988  7788887544 458899999999998776 58899999999999988876


Q ss_pred             ccCc-------ceeEEEEeecCC-ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          86 LDFT-------PLTVECIHYLGD-AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        86 ~~~~-------~~~~~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ....       ....+..++... +++++    -..+.|.+.|....+.+..-... .........|+|++++++ ++..
T Consensus       118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l----kd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~-va~~  191 (369)
T PF02239_consen  118 TGGMPVDGPESRVAAIVASPGRPEFVVNL----KDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFL-VAAN  191 (369)
T ss_dssp             --EE-TTTS---EEEEEE-SSSSEEEEEE----TTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEE-EEEG
T ss_pred             cccccccccCCCceeEEecCCCCEEEEEE----ccCCeEEEEEeccccccceeeec-ccccccccccCcccceee-eccc
Confidence            4322       122222233333 44444    55688888897766544322221 122456788999998753 3344


Q ss_pred             CCCeEEEEEccCCCccceeecc------------------------------------------------------Cccc
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDR------------------------------------------------------LHTK  183 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~------------------------------------------------------~~~~  183 (261)
                      .++.|.++|.. +++.+..+..                                                      ....
T Consensus       192 ~sn~i~viD~~-~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~  270 (369)
T PF02239_consen  192 GSNKIAVIDTK-TGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG  270 (369)
T ss_dssp             GGTEEEEEETT-TTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS
T ss_pred             ccceeEEEeec-cceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC
Confidence            45677777776 4433322210                                                      0111


Q ss_pred             CeEEEEEcCCCCEEEEE----cCCCeEEEeecccccccCCeeeeeecccccceeecCC-CccceeeeeECCCCceEEEee
Q psy6859         184 PVVLIKFNPIYQVVVSV----DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       184 ~v~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      + ..+.-+|+++++.+.    ...+.|.++|.++               .+.+..+.. ....+..+.|++||+.+..+.
T Consensus       271 g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t---------------l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~  334 (369)
T PF02239_consen  271 G-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT---------------LKVVKTITPGPGKRVVHMEFNPDGKEVWVSV  334 (369)
T ss_dssp             S---EE--TT-SEEEEE-TT-SSHT-EEEEECCG---------------TEEEE-HHHHHT--EEEEEE-TTSSEEEEEE
T ss_pred             c-ceeecCCCCccEEeeccCCCCCceEEEEECcC---------------cceeEEEeccCCCcEeccEECCCCCEEEEEE
Confidence            1 345678999998777    4567899999854               344444432 223488999999999988876


Q ss_pred             cC
Q psy6859         259 MD  260 (261)
Q Consensus       259 ~D  260 (261)
                      +|
T Consensus       335 ~~  336 (369)
T PF02239_consen  335 WD  336 (369)
T ss_dssp             E-
T ss_pred             ec
Confidence            65

...

>KOG0882|consensus

Probab=99.65  E-value=2.2e-15  Score=112.19  Aligned_cols=213  Identities=47%  Similarity=0.742  Sum_probs=171.5

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccC-CceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQE-EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~~~   78 (261)
                      +|.+.|+.+.....+++.+++.||.++.|.... .+.+.+..+..|.+.|.+++.+-++..+.|.+. |..++++|+.+-
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            699999999877788999999999999998766 566888889999999999999999999999777 999999999887


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ..+..+++..-|..+.++...+..+..+                                              .++.-.
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~I----------------------------------------------AVs~~~  120 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLI----------------------------------------------AVSLFK  120 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeE----------------------------------------------Eeeccc
Confidence            7766666665555555554444332222                                              334445


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCee-eeeecccccceeecCC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKC-VHFESKLDTDLFEFAK  237 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~  237 (261)
                      ++.+.++|-+....+...+..-|.++|..+.++|.+..+++....|.|.-|.... .+++|+. ..++.+....+..+..
T Consensus       121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K  199 (558)
T KOG0882|consen  121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPK  199 (558)
T ss_pred             CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccc
Confidence            6778888877445444444447999999999999999999999999999999876 7888865 7888888888888888


Q ss_pred             CccceeeeeECCCCceEEEeecC
Q psy6859         238 NKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      ......++.|+|+|..+.+-+.|
T Consensus       200 ~Kt~pts~Efsp~g~qistl~~D  222 (558)
T KOG0882|consen  200 AKTEPTSFEFSPDGAQISTLNPD  222 (558)
T ss_pred             cccCccceEEccccCcccccCcc
Confidence            88899999999999998877665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=8.2e-14  Score=109.93  Aligned_cols=218  Identities=13%  Similarity=0.042  Sum_probs=133.0

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCC---CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEc-
Q psy6859           2 HRSPITHVVVTK-TDFVITASND---GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDV-   75 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~-   75 (261)
                      |.+.+.+.+|+| ++.|+..+.+   ..|.+||+.++....+   ....+.+....|+|||+.|+ +.+.+|...+|.+ 
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV---ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            456788999999 8888766543   4699999987633332   22334567889999998886 5677887666654 


Q ss_pred             -cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEE--cCCCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          76 -INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD--CKGNDMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                       ..+. ...+..+........++++++.++..   ...++...+|.  +.+++. ..+...  ........|+|++.+++
T Consensus       271 ~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~---s~~~g~~~Iy~~~~~~g~~-~~lt~~--g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        271 ADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFT---SDRGGAPQIYRMPASGGAA-QRVTFT--GSYNTSPRISPDGKLLA  343 (427)
T ss_pred             CCCCC-cEECCCCCCCCcCeEEcCCCCEEEEE---ecCCCCcEEEEEECCCCce-EEEecC--CCCcCceEECCCCCEEE
Confidence             3333 33333222223445688899877654   23345555554  445433 222221  12234578999998743


Q ss_pred             EEEecCC--CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC-e--EEEeecccccccCCeeeeeecc
Q psy6859         153 AVSDQDS--SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG-I--LEYWSGYKQEFKFPKCVHFESK  227 (261)
Q Consensus       153 ~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~--i~iwd~~~~~~~~~~~~~~~~~  227 (261)
                      +.+ ...  ..|.+||+. +++.. .+. . ........|+|||+.|+..+.++ .  +.+.++                
T Consensus       344 ~~s-~~~g~~~I~v~d~~-~g~~~-~lt-~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~----------------  402 (427)
T PRK02889        344 YIS-RVGGAFKLYVQDLA-TGQVT-ALT-D-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS----------------  402 (427)
T ss_pred             EEE-ccCCcEEEEEEECC-CCCeE-Ecc-C-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC----------------
Confidence            332 222  269999997 65543 343 2 23346789999999887666433 3  333343                


Q ss_pred             cccceeecCCCccceeeeeECCC
Q psy6859         228 LDTDLFEFAKNKTYPSGLSFSPD  250 (261)
Q Consensus       228 ~~~~~~~~~~~~~~v~~~~~s~~  250 (261)
                      .++....+..+.+.+...+|+|-
T Consensus       403 ~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        403 DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCceEEeecCCCCCCCCccCCC
Confidence            24445555556677888899884

>KOG1272|consensus

Probab=99.64  E-value=4.8e-16  Score=115.92  Aligned_cols=224  Identities=12%  Similarity=0.082  Sum_probs=161.4

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      ..|..+.|-. .+++|+ .....+.|||-..   ..+..++.| ..|..+.|.|.--+|++++..|.++.-|+.+|+.+.
T Consensus       171 Etv~Dv~~LHneq~~AV-AQK~y~yvYD~~G---tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa  245 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAV-AQKKYVYVYDNNG---TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA  245 (545)
T ss_pred             hhhhhhhhhcchHHHHh-hhhceEEEecCCC---cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhH
Confidence            3466777777 555555 4557899999765   455666655 678999999988889999999999999999999999


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeE
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV  162 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  162 (261)
                      .+........++...|.+.-+-    .|..+|+|.+|.....+++..+..  ++..+.++++.+++.+  +++.+.|..+
T Consensus       246 ~~~t~~G~~~vm~qNP~NaVih----~GhsnGtVSlWSP~skePLvKiLc--H~g~V~siAv~~~G~Y--MaTtG~Dr~~  317 (545)
T KOG1272|consen  246 SIRTGAGRTDVMKQNPYNAVIH----LGHSNGTVSLWSPNSKEPLVKILC--HRGPVSSIAVDRGGRY--MATTGLDRKV  317 (545)
T ss_pred             HHHccCCccchhhcCCccceEE----EcCCCceEEecCCCCcchHHHHHh--cCCCcceEEECCCCcE--Eeecccccce
Confidence            9887777777777766654333    358899999999999988877665  5668999999999987  8999999999


Q ss_pred             EEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC--Ccc
Q psy6859         163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK--NKT  240 (261)
Q Consensus       163 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  240 (261)
                      +|||++ ....+.++. . ..+...+++|..| +||.+ ....+.||.=.-+            .++.....+..  ..+
T Consensus       318 kIWDlR-~~~ql~t~~-t-p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~------------~s~~~~~pYm~H~~~~  380 (545)
T KOG1272|consen  318 KIWDLR-NFYQLHTYR-T-PHPASNLSLSQKG-LLALS-YGDHVQIWKDALK------------GSGHGETPYMNHRCGG  380 (545)
T ss_pred             eEeeec-cccccceee-c-CCCcccccccccc-ceeee-cCCeeeeehhhhc------------CCCCCCcchhhhccCc
Confidence            999999 555555654 2 4567788888766 34444 3446999953210            00111111111  234


Q ss_pred             ceeeeeECCCCceEEEe
Q psy6859         241 YPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       241 ~v~~~~~s~~~~~l~s~  257 (261)
                      +|.++.|.|-...|-.|
T Consensus       381 ~V~~l~FcP~EDvLGIG  397 (545)
T KOG1272|consen  381 PVEDLRFCPYEDVLGIG  397 (545)
T ss_pred             ccccceeccHHHeeecc
Confidence            78888888865555443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.63  E-value=1.5e-13  Score=96.33  Aligned_cols=159  Identities=14%  Similarity=0.169  Sum_probs=108.9

Q ss_pred             EEEEcC-CCeEEEecC----------CCeEEEEeccCCceeeeEEeec-cccceeEEEEeeCCCEEEEE--eCCCcEEEE
Q psy6859           8 HVVVTK-TDFVITASN----------DGHIKFWKKQEEGIEFVKHFRS-HLGVIHSICTNYNGTLLCTV--ASDKAMKVF   73 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~~----------d~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~--~~dg~v~~w   73 (261)
                      .+.|+| |++|+.-..          -+...+|.++..+ .....+.- ..++|.+++|+|+++.++..  ..++.+.+|
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            577899 876554322          2345666664432 23333332 34579999999999987654  356799999


Q ss_pred             EccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859          74 DVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        74 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
                      |++ ++.+..+.  ..+...+.++|+|+.++.+.+ +...|.|.+||+++.+.+...+.   + .+..++|+|++.+++.
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~-~n~~G~l~~wd~~~~~~i~~~~~---~-~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGF-GNLNGDLEFWDVRKKKKISTFEH---S-DATDVEWSPDGRYLAT  160 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEc-cCCCcEEEEEECCCCEEeecccc---C-cEEEEEEcCCCCEEEE
Confidence            995 56665554  445667889999998877633 24568899999998877766543   2 4689999999998544


Q ss_pred             EEec----CCCeEEEEEccCCCccceee
Q psy6859         154 VSDQ----DSSHVHIYDCKGNGTPLHVL  177 (261)
Q Consensus       154 ~~~~----~d~~i~i~d~~~~~~~~~~~  177 (261)
                      ++..    .|+.++||+..  |+.+...
T Consensus       161 a~t~~r~~~dng~~Iw~~~--G~~l~~~  186 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQ--GRLLYKK  186 (194)
T ss_pred             EEeccceeccccEEEEEec--CeEeEec
Confidence            3322    48889999984  5555544

>KOG0644|consensus

Probab=99.62  E-value=8e-16  Score=122.46  Aligned_cols=200  Identities=17%  Similarity=0.190  Sum_probs=142.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||...|+.++.+. +..+++++.|..|++|.+..+  .++..+++|++.|++++|+|-.    +.+.||++++||.+-.-
T Consensus       230 Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~--~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~  303 (1113)
T KOG0644|consen  230 GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG--APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEP  303 (1113)
T ss_pred             CCccccchhccchhhhhhhhcccCceEEEEecCCC--chHHHHhccccceeeeccCccc----cCCCCCceEeccccccc
Confidence            8999999999998 778999999999999999988  8999999999999999999964    67899999999986100


Q ss_pred             --------------eeeeeeccC----------------cceeEEEEeecCCceeee---------eeecCCCCeEEEEE
Q psy6859          80 --------------MINMIKLDF----------------TPLTVECIHYLGDAIPTA---------AVSDQDSSRVHIYD  120 (261)
Q Consensus        80 --------------~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---------~~s~~~d~~i~i~d  120 (261)
                                    .+..+....                +....+.+  ....+..+         .++.-.+-.+.+|+
T Consensus       304 ~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~--~~~~lif~t~ssd~~~~~~~ar~~~~~~vwn  381 (1113)
T KOG0644|consen  304 RIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW--RSNLLIFVTRSSDLSSIVVTARNDHRLCVWN  381 (1113)
T ss_pred             cccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh--hccceEEEeccccccccceeeeeeeEeeeee
Confidence                          000000000                00000000  00011110         11123355677888


Q ss_pred             cCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE
Q psy6859         121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV  200 (261)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  200 (261)
                      +.++...+.+..+.+  .+..+.++|-... +..+++.||...|||+- .+.+++.+..+ ...+..-+|+++|+.++..
T Consensus       382 l~~g~l~H~l~ghsd--~~yvLd~Hpfn~r-i~msag~dgst~iwdi~-eg~pik~y~~g-h~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  382 LYTGQLLHNLMGHSD--EVYVLDVHPFNPR-IAMSAGYDGSTIIWDIW-EGIPIKHYFIG-HGKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             cccchhhhhhccccc--ceeeeeecCCCcH-hhhhccCCCceEeeecc-cCCcceeeecc-cceeeccccCCCCceEecC
Confidence            888877777766544  4566777777664 36788899999999998 88888777624 5556677999999999998


Q ss_pred             cCCCeEEEeeccc
Q psy6859         201 DKAGILEYWSGYK  213 (261)
Q Consensus       201 ~~dg~i~iwd~~~  213 (261)
                      ..-|.+.|.....
T Consensus       457 d~hgql~i~g~gq  469 (1113)
T KOG0644|consen  457 DDHGQLYILGTGQ  469 (1113)
T ss_pred             CCCCceEEeccCC
Confidence            8889999987644

>KOG1354|consensus

Probab=99.62  E-value=1.1e-13  Score=99.91  Aligned_cols=236  Identities=12%  Similarity=0.178  Sum_probs=148.4

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCC---ceeeeEEeeccc------------cceeEEEEeeCC--CEEEEEe
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEE---GIEFVKHFRSHL------------GVIHSICTNYNG--TLLCTVA   65 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~~~~~------------~~v~~~~~~~~~--~~l~s~~   65 (261)
                      +-|.+|.|.. |++||+|..+|.|.++.-+..   +......++.|.            ..|+.+.|.+++  ..++...
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            4588999998 999999999999999975442   223444555554            358899998754  4577778


Q ss_pred             CCCcEEEEEccccceee---------------eee-------------------ccCcc--eeEEEEeecCCceeeeeee
Q psy6859          66 SDKAMKVFDVINFDMIN---------------MIK-------------------LDFTP--LTVECIHYLGDAIPTAAVS  109 (261)
Q Consensus        66 ~dg~v~~wd~~~~~~~~---------------~~~-------------------~~~~~--~~~~~~~~~~~~~~~~~~s  109 (261)
                      .|.+|++|.+.......               .++                   .+.++  +..+.+..+...+++    
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS----  181 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS----  181 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee----
Confidence            99999999986432111               110                   01111  222333334444443    


Q ss_pred             cCCCCeEEEEEcCCCc-eeeEEeecCC-----cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc---ceeec--
Q psy6859         110 DQDSSRVHIYDCKGND-MINMIKLDFT-----PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP---LHVLD--  178 (261)
Q Consensus       110 ~~~d~~i~i~d~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~--  178 (261)
                       ..|-.|.+|+++-.. ..........     ..-|++..|+|.....++. .+..|+|++-|+|...-+   -+.++  
T Consensus       182 -ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y-SSSKGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  182 -ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY-SSSKGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             -ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE-ecCCCcEEEeechhhhhhcchhhhhccc
Confidence             478899999987432 2222222111     1246788899987765444 456999999999922111   11111  


Q ss_pred             -c--------CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc----------
Q psy6859         179 -R--------LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK----------  239 (261)
Q Consensus       179 -~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  239 (261)
                       .        .--..|..+.|+++|+|+++-+. -+|++||+...              .+++.+++-|.          
T Consensus       260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme--------------~~pv~t~~vh~~lr~kLc~lY  324 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME--------------AKPVETYPVHEYLRSKLCSLY  324 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc--------------CCcceEEeehHhHHHHHHHHh
Confidence             0        11245788999999999998764 57999998532              33343333332          


Q ss_pred             --cce---eeeeECCCCceEEEeecC
Q psy6859         240 --TYP---SGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       240 --~~v---~~~~~s~~~~~l~s~~~D  260 (261)
                        ..|   ..++|+.++.++++||..
T Consensus       325 EnD~IfdKFec~~sg~~~~v~TGsy~  350 (433)
T KOG1354|consen  325 ENDAIFDKFECSWSGNDSYVMTGSYN  350 (433)
T ss_pred             hccchhheeEEEEcCCcceEeccccc
Confidence              122   458899999999999875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.62  E-value=3.1e-11  Score=92.80  Aligned_cols=238  Identities=13%  Similarity=0.186  Sum_probs=150.5

Q ss_pred             EEEEEcC-CCeEEEecC----CCeEEEEeccCC--ceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEccc-
Q psy6859           7 THVVVTK-TDFVITASN----DGHIKFWKKQEE--GIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVIN-   77 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~----d~~i~iw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~-   77 (261)
                      ..++++| +++|.+...    ++.|..|++...  ..+.+............++++|++++|+++. .+|.+.++++.. 
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~  119 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD  119 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence            4577888 777776655    579999988763  4455555543334556899999999999887 489999999986 


Q ss_pred             cceeee---eec----------cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc--ee--eEEeecCCcceEE
Q psy6859          78 FDMINM---IKL----------DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND--MI--NMIKLDFTPLTVE  140 (261)
Q Consensus        78 ~~~~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~--~~~~~~~~~~~~~  140 (261)
                      +.....   +..          .......+.+.|+++.+++..   -....|.+|++....  ..  ..+... .....+
T Consensus       120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d---lG~D~v~~~~~~~~~~~l~~~~~~~~~-~G~GPR  195 (345)
T PF10282_consen  120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD---LGADRVYVYDIDDDTGKLTPVDSIKVP-PGSGPR  195 (345)
T ss_dssp             SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE---TTTTEEEEEEE-TTS-TEEEEEEEECS-TTSSEE
T ss_pred             cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe---cCCCEEEEEEEeCCCceEEEeeccccc-cCCCCc
Confidence            433322   110          112235567788888776652   345689999997654  32  223332 233568


Q ss_pred             EEEEeCCCCceEEEEecCCCeEEEEEccC-CCc--cceeec---cC--cccCeEEEEEcCCCCEEEEEc-CCCeEEEeec
Q psy6859         141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKG-NGT--PLHVLD---RL--HTKPVVLIKFNPIYQVVVSVD-KAGILEYWSG  211 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~--~~~~~~---~~--~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~  211 (261)
                      .+.|+|++.+. ++....++.|.+|++.. .+.  .+..+.   ..  .......|+++|||++|+++. ..+.|.+|++
T Consensus       196 h~~f~pdg~~~-Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  196 HLAFSPDGKYA-YVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             EEEE-TTSSEE-EEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             EEEEcCCcCEE-EEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence            99999999864 56667789999999872 221  222222   01  122578899999999886654 6778999998


Q ss_pred             ccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         212 YKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      ....           ...+.+..+.......+.++++|+|++|+++..+
T Consensus       275 d~~~-----------g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  275 DPAT-----------GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             CTTT-----------TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             ecCC-----------CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            4310           0112233333234457899999999999988754

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547|consensus

Probab=99.61  E-value=1.6e-13  Score=105.49  Aligned_cols=179  Identities=12%  Similarity=0.043  Sum_probs=141.3

Q ss_pred             eCCCEEEEEeCCCcEEEEEccccceeeeeeccCc-ceeEEE----Eeec----------------CCceeeeeeecCCCC
Q psy6859          56 YNGTLLCTVASDKAMKVFDVINFDMINMIKLDFT-PLTVEC----IHYL----------------GDAIPTAAVSDQDSS  114 (261)
Q Consensus        56 ~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~~~~~~----~~~~----------------~~~~~~~~~s~~~d~  114 (261)
                      |...++|....||.+++|+...++....+....+ ...+..    +..+                ++..  .++-|...|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~--~lvlgt~~g   80 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTS--MLVLGTPQG   80 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCce--EEEeecCCc
Confidence            4456899999999999999999887777653221 111111    1110                1111  122357789


Q ss_pred             eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC
Q psy6859         115 RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY  194 (261)
Q Consensus       115 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  194 (261)
                      .|.+|++..++....+....+...+.++.++.+...  +.+++.|+.+..|+.. ..+.++.+. ..+..+.+++.+|||
T Consensus        81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c--iyS~~ad~~v~~~~~~-~~~~~~~~~-~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC--IYSVGADLKVVYILEK-EKVIIRIWK-EQKPLVSSLCISPDG  156 (541)
T ss_pred             cEEEEEecCCeEEEEEecCCCCCcceeeecccccCc--eEecCCceeEEEEecc-cceeeeeec-cCCCccceEEEcCCC
Confidence            999999999999999998888999999998877654  8899999999999998 888888887 788889999999999


Q ss_pred             CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCC-----CceEEEe
Q psy6859         195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPD-----GNKFVTI  257 (261)
Q Consensus       195 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~s~  257 (261)
                      ..|++++  +.|++||+               ++.+.+..+.+|.++|+++.|..+     |.+++++
T Consensus       157 ~~l~~as--~~ik~~~~---------------~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss  207 (541)
T KOG4547|consen  157 KILLTAS--RQIKVLDI---------------ETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS  207 (541)
T ss_pred             CEEEecc--ceEEEEEc---------------cCceEEEEecCCCcceEEEEEEEeccccccceeeec
Confidence            9999887  57999999               457889999999999999999887     6776654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.60  E-value=1.1e-12  Score=103.89  Aligned_cols=208  Identities=12%  Similarity=0.096  Sum_probs=131.0

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC---CcEEEEEccccceeeeeeccCcceeEEEEeecC
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD---KAMKVFDVINFDMINMIKLDFTPLTVECIHYLG  100 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (261)
                      ..|.++|.+..   ..+.+..+...+....|+||+++|+.+..+   ..|++||+.+++........ .......+++++
T Consensus       170 ~~l~~~d~~g~---~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~-~~~~~~~~spDg  245 (417)
T TIGR02800       170 YELQVADYDGA---NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP-GMNGAPAFSPDG  245 (417)
T ss_pred             ceEEEEcCCCC---CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCC
Confidence            35777777643   233444466678899999999999887654   47999999887654433322 223346678888


Q ss_pred             CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC--eEEEEEccCCCccceeec
Q psy6859         101 DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS--HVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       101 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~  178 (261)
                      +.++.. .+...+..|.+||+.++.......   .........|+|++..+++ +....+  .|+++|+. +++. ..+.
T Consensus       246 ~~l~~~-~~~~~~~~i~~~d~~~~~~~~l~~---~~~~~~~~~~s~dg~~l~~-~s~~~g~~~iy~~d~~-~~~~-~~l~  318 (417)
T TIGR02800       246 SKLAVS-LSKDGNPDIYVMDLDGKQLTRLTN---GPGIDTEPSWSPDGKSIAF-TSDRGGSPQIYMMDAD-GGEV-RRLT  318 (417)
T ss_pred             CEEEEE-ECCCCCccEEEEECCCCCEEECCC---CCCCCCCEEECCCCCEEEE-EECCCCCceEEEEECC-CCCE-EEee
Confidence            766543 112234568999998775433322   1222345678999986433 333333  57777876 5443 3443


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEcCCC---eEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEE
Q psy6859         179 RLHTKPVVLIKFNPIYQVVVSVDKAG---ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV  255 (261)
Q Consensus       179 ~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  255 (261)
                       .+...+..+.|+|+|++|+..+.++   .|.+||+.++               . ...+... .......|+|||++|+
T Consensus       319 -~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~---------------~-~~~l~~~-~~~~~p~~spdg~~l~  380 (417)
T TIGR02800       319 -FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG---------------G-ERVLTDT-GLDESPSFAPNGRMIL  380 (417)
T ss_pred             -cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC---------------C-eEEccCC-CCCCCceECCCCCEEE
Confidence             4555677889999999988877665   7888887532               1 1222211 2234568999999988


Q ss_pred             EeecC
Q psy6859         256 TISMD  260 (261)
Q Consensus       256 s~~~D  260 (261)
                      ..+.+
T Consensus       381 ~~~~~  385 (417)
T TIGR02800       381 YATTR  385 (417)
T ss_pred             EEEeC
Confidence            87764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2394|consensus

Probab=99.60  E-value=2.2e-14  Score=109.04  Aligned_cols=162  Identities=13%  Similarity=0.196  Sum_probs=116.0

Q ss_pred             CCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEE--eeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           3 RSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICT--NYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         3 ~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      +..|+|+.|-|  ...++.+-.+|.+.++|.+-.            ...+...|  .+++..+.....-      ...+.
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------------~~~t~p~~~~~k~~~~f~i~t~k------sk~~r  280 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------------CGATAPSYQALKDGDQFAILTSK------SKKTR  280 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeecccc------------ccCCCCcccccCCCCeeEEeeee------ccccC
Confidence            36799999999  457777888999999986321            11111112  2333333322110      00111


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      .++..+......+...+++++++.++++    +.||.++|||..+.+++..++..+  ....|++|+||+++  +++|++
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~LA~V----SqDGfLRvF~fdt~eLlg~mkSYF--GGLLCvcWSPDGKy--IvtGGE  352 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKYLATV----SQDGFLRIFDFDTQELLGVMKSYF--GGLLCVCWSPDGKY--IVTGGE  352 (636)
T ss_pred             CccceeEeccccccceeEcCCCceEEEE----ecCceEEEeeccHHHHHHHHHhhc--cceEEEEEcCCccE--EEecCC
Confidence            3333334344456677888999999999    999999999999887766655433  36799999999997  999999


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP  192 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  192 (261)
                      |--|.||.+. ..+.+..-+ +|+.+|..++|+|
T Consensus       353 DDLVtVwSf~-erRVVARGq-GHkSWVs~VaFDp  384 (636)
T KOG2394|consen  353 DDLVTVWSFE-ERRVVARGQ-GHKSWVSVVAFDP  384 (636)
T ss_pred             cceEEEEEec-cceEEEecc-ccccceeeEeecc
Confidence            9999999998 888888887 9999999999983

>KOG4497|consensus

Probab=99.59  E-value=2.9e-14  Score=102.44  Aligned_cols=215  Identities=15%  Similarity=0.158  Sum_probs=146.4

Q ss_pred             EEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeeeec
Q psy6859           9 VVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMINMIKL   86 (261)
Q Consensus         9 ~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~~~~~   86 (261)
                      ..||| |+++|+.+.- .+.|-|.++-  +..+.+. --+.|.-+.|..|..+++.+ ..++.|.+|++...+....+..
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tl--q~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde   89 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETL--QLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE   89 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchh--hHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence            57899 9999998875 7777776664  3333332 23568889999887766654 5788999999999998888888


Q ss_pred             cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe--EEE
Q psy6859          87 DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH--VHI  164 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--i~i  164 (261)
                      ...+.....++|+|+.++..   ..-+-.|.+|.+.+.+....--   ....+..++|+|++++..+++- .|..  +.+
T Consensus        90 g~agls~~~WSPdgrhiL~t---seF~lriTVWSL~t~~~~~~~~---pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i  162 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLT---SEFDLRITVWSLNTQKGYLLPH---PKTNVKGYAFHPDGQFCAILSR-RDCKDYVQI  162 (447)
T ss_pred             CCCcceeeeECCCcceEeee---ecceeEEEEEEeccceeEEecc---cccCceeEEECCCCceeeeeec-ccHHHHHHH
Confidence            88888999999999776654   3678899999998875433221   2224578999999987433322 1211  222


Q ss_pred             EEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceee
Q psy6859         165 YDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSG  244 (261)
Q Consensus       165 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  244 (261)
                      .... .-..++.+. ...-..+.+.|+|||..||+         ||--               ..-.+..+. -.-.+..
T Consensus       163 ~~c~-~W~ll~~f~-~dT~DltgieWsPdg~~laV---------wd~~---------------Leykv~aYe-~~lG~k~  215 (447)
T KOG4497|consen  163 SSCK-AWILLKEFK-LDTIDLTGIEWSPDGNWLAV---------WDNV---------------LEYKVYAYE-RGLGLKF  215 (447)
T ss_pred             HhhH-HHHHHHhcC-CCcccccCceECCCCcEEEE---------ecch---------------hhheeeeee-eccceeE
Confidence            2222 334566665 55667889999999987664         4421               001111111 1245778


Q ss_pred             eeECCCCceEEEeecCC
Q psy6859         245 LSFSPDGNKFVTISMDR  261 (261)
Q Consensus       245 ~~~s~~~~~l~s~~~Dg  261 (261)
                      ++|+|.+++|+.|+.|+
T Consensus       216 v~wsP~~qflavGsyD~  232 (447)
T KOG4497|consen  216 VEWSPCNQFLAVGSYDQ  232 (447)
T ss_pred             EEeccccceEEeeccch
Confidence            99999999999999985

>KOG2139|consensus

Probab=99.58  E-value=3.1e-13  Score=98.31  Aligned_cols=187  Identities=12%  Similarity=0.131  Sum_probs=131.2

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeec-cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-
Q psy6859          47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKL-DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-  124 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-  124 (261)
                      -.+..++|++.-..++++..|-.|++|+-.. ++...++. ....+.++.+.|.+...+++    +--+.|.+|..... 
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselav----gCr~gIciW~~s~tl  173 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAV----GCRAGICIWSDSRTL  173 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeee----eecceeEEEEcCccc
Confidence            3567889998666788889999999999765 44444442 34457788888876666565    45677999976421 


Q ss_pred             ---c--------eeeEEeecCCcceEEEEEEeCCCCceEEEEec-CCCeEEEEEccCCCccceeeccCcccCeEEEEEcC
Q psy6859         125 ---D--------MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP  192 (261)
Q Consensus       125 ---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  192 (261)
                         .        ..+.++...+ ..|++++|++|+..  +++++ .+..|.|||.. ++..+.... ...+.++-+.|||
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~--l~tAS~gsssi~iWdpd-tg~~~pL~~-~glgg~slLkwSP  248 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI--LVTASFGSSSIMIWDPD-TGQKIPLIP-KGLGGFSLLKWSP  248 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcCCCCE--EeecccCcceEEEEcCC-CCCcccccc-cCCCceeeEEEcC
Confidence               1        1222333333 58999999999975  44443 47789999998 776554443 3456788899999


Q ss_pred             CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         193 IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       193 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      |+.+|+.+.-|+..++|+..+              +....+-.. -.+.|...+|+|+|++|+.++
T Consensus       249 dgd~lfaAt~davfrlw~e~q--------------~wt~erw~l-gsgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  249 DGDVLFAATCDAVFRLWQENQ--------------SWTKERWIL-GSGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             CCCEEEEecccceeeeehhcc--------------cceecceec-cCCceeeeeecCCCCEEEEEE
Confidence            999999999999999997542              122222222 234899999999999876543

>KOG2315|consensus

Probab=99.56  E-value=3.2e-12  Score=97.91  Aligned_cols=102  Identities=21%  Similarity=0.308  Sum_probs=81.8

Q ss_pred             cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc---CCCeEEEeecc
Q psy6859         136 PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD---KAGILEYWSGY  212 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~  212 (261)
                      .+.|.++.|++++....++.|-.-..+.|||++  +.++..+   .+++-+.+-|+|.|++|+.++   ..|.+.+||+.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            457899999999988778888888999999996  6777777   466778899999999987776   45789999995


Q ss_pred             cccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         213 KQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      +               .+++..+..-  .-+-+.|+|||++++++..
T Consensus       345 n---------------~K~i~~~~a~--~tt~~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  345 N---------------RKLIAKFKAA--NTTVFEWSPDGEYFLTATT  374 (566)
T ss_pred             c---------------hhhccccccC--CceEEEEcCCCcEEEEEec
Confidence            3               5666666543  3355899999999999864

>KOG0280|consensus

Probab=99.56  E-value=2.8e-12  Score=90.86  Aligned_cols=234  Identities=13%  Similarity=0.086  Sum_probs=154.0

Q ss_pred             CeEEEEEcC----CC-eEEEecCCCeEEEEeccCCceeeeEEeeccc------cceeEEEEeeCCCEEEEEeCCCcEEEE
Q psy6859           5 PITHVVVTK----TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHL------GVIHSICTNYNGTLLCTVASDKAMKVF   73 (261)
Q Consensus         5 ~v~~~~~~~----~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~dg~v~~w   73 (261)
                      .+..+.|..    +. .++-+..+|.|.++..+..  +....+++-.      ....++.|++.+..++++..+|.+.+-
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~--~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED--ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccc--eeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            345555652    33 5666778889999887654  3333333211      124577888989899999999999866


Q ss_pred             Eccccceee--eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCc
Q psy6859          74 DVINFDMIN--MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIP  150 (261)
Q Consensus        74 d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (261)
                      +........  ..+.+.-+...+.++....   -+.++|+.|+.+..||++.. +.+.. ....+...|.++.-+|...+
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~p---nlvytGgDD~~l~~~D~R~p~~~i~~-n~kvH~~GV~SI~ss~~~~~  224 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEP---NLVYTGGDDGSLSCWDIRIPKTFIWH-NSKVHTSGVVSIYSSPPKPT  224 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCC---ceEEecCCCceEEEEEecCCcceeee-cceeeecceEEEecCCCCCc
Confidence            655444333  5555555555555544332   33466799999999999933 22222 11224457888888876543


Q ss_pred             eEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC--CEEEEEcCCCeEEEeecccccccCCeeeeeeccc
Q psy6859         151 TAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY--QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKL  228 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  228 (261)
                       .+++|+.|..|++||.|+-++++..-  .-.+.|+.+.++|.-  ++|+++..+| .+|-+.+.+..          +-
T Consensus       225 -~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~----------e~  290 (339)
T KOG0280|consen  225 -YIATGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVL----------EF  290 (339)
T ss_pred             -eEEEeccccceeeeehhcccCccccC--ccccceEEEEecchhhhHHHHHHHhcC-ceEEEeccccc----------ch
Confidence             48999999999999999778888877  356899999999954  3567777777 78888765311          00


Q ss_pred             ccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         229 DTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       229 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      .......+.|.+-+..-.|......||+|+
T Consensus       291 ~~~~~s~~~hdSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  291 QIVLPSDKIHDSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             heeeeccccccceeeccccccccceeeeee
Confidence            113445566877777778855556788765

>KOG1064|consensus

Probab=99.56  E-value=8.3e-14  Score=119.28  Aligned_cols=189  Identities=14%  Similarity=0.207  Sum_probs=138.6

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ..|.++.-+| ..+.+||+.||.+++|....+  +.+..++ ..+..|+.+.|+.+|+.+..+..||.+.+|.+. .+..
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence            4567777788 789999999999999998876  4443332 233789999999999999999999999999986 4455


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      ...+.+........+  -+..++.. -..+.++.+.+||..-......+. ..|+...+++++.|...  ++++|+.+|.
T Consensus      2286 ~s~qchnk~~~Df~F--i~s~~~ta-g~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~q--llisggr~G~ 2359 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRF--IGSLLATA-GRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQ--LLISGGRKGE 2359 (2439)
T ss_pred             eccccCCccccceee--eehhhhcc-ccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcce--EEEecCCcCc
Confidence            555544433332222  22333332 223578899999965332222222 44677889999999986  4999999999


Q ss_pred             EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      |++||++ ..++++.++ .         +. ...++++++..|.++||++..
T Consensus      2360 v~l~D~r-qrql~h~~~-~---------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2360 VCLFDIR-QRQLRHTFQ-A---------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             EEEeehH-HHHHHHHhh-h---------hh-hhheeeccCcccceEEEEccc
Confidence            9999999 888888886 3         44 556899999999999999864

>KOG1409|consensus

Probab=99.55  E-value=8e-13  Score=95.53  Aligned_cols=234  Identities=9%  Similarity=0.160  Sum_probs=164.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe-eccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF-RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-   77 (261)
                      ||.+.|++...-| ..-+++.+.|.+++||--.+.+ +.-..+ .....+++++.+.++...|+.+-..|++.-+.+.. 
T Consensus        22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~-q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed  100 (404)
T KOG1409|consen   22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG-QYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED  100 (404)
T ss_pred             CchhhhhhheeccCCCCeEEccccceeeeEEecccc-ccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence            7888888888888 7789999999999999655432 322222 23457889999999999999999999998887642 


Q ss_pred             ---cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          78 ---FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        78 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                         ....+.+..+..+.....+.....++++.    +.|..+.---.+.+..+..+.....+   .++.+.-.    ...
T Consensus       101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~----~~dk~~~~hc~e~~~~lg~Y~~~~~~---t~~~~d~~----~~f  169 (404)
T KOG1409|consen  101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLST----GKDKQFAWHCTESGNRLGGYNFETPA---SALQFDAL----YAF  169 (404)
T ss_pred             hhhcchhhhhhhhhcceeeEEecCCceeEEEe----ccccceEEEeeccCCcccceEeeccC---CCCceeeE----EEE
Confidence               33444444555666666666666666665    77777765555555544433322111   11111111    245


Q ss_pred             EecCCCeEEEEEccC-CCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859         155 SDQDSSHVHIYDCKG-NGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF  233 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  233 (261)
                      .|...|.|.+-.+.. .-.++.++. +|...+++++|.|..+.|++|..|..+.+||+..+              .....
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--------------~g~~~  234 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--------------KGTAY  234 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCC--------------cceee
Confidence            555667766655542 236677887 99999999999999999999999999999998542              23446


Q ss_pred             ecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         234 EFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       234 ~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++.+|...|..+..-+--+.|.+++.||
T Consensus       235 el~gh~~kV~~l~~~~~t~~l~S~~edg  262 (404)
T KOG1409|consen  235 ELQGHNDKVQALSYAQHTRQLISCGEDG  262 (404)
T ss_pred             eeccchhhhhhhhhhhhheeeeeccCCC
Confidence            6778999998888888888888888886

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.54  E-value=4.6e-12  Score=100.38  Aligned_cols=189  Identities=15%  Similarity=0.092  Sum_probs=116.1

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCC---CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEE-EeCCC--cEEEEE
Q psy6859           2 HRSPITHVVVTK-TDFVITASND---GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCT-VASDK--AMKVFD   74 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg--~v~~wd   74 (261)
                      |...+...+|+| +++|+.+..+   ..|.+|++.++....   +..+.+.+..++|+||++.|+. .+.++  .|.+||
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence            344678889999 8888776543   479999998763222   2334456677899999987764 44444  588889


Q ss_pred             ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      +.+++...... .........++++++.++...-. .....|.++|+.+++.. .+..  .........|+|++..  ++
T Consensus       265 ~~~~~~~~l~~-~~~~~~~~~~s~dg~~l~~~s~~-~g~~~iy~~d~~~~~~~-~l~~--~~~~~~~~~~spdg~~--i~  337 (417)
T TIGR02800       265 LDGKQLTRLTN-GPGIDTEPSWSPDGKSIAFTSDR-GGSPQIYMMDADGGEVR-RLTF--RGGYNASPSWSPDGDL--IA  337 (417)
T ss_pred             CCCCCEEECCC-CCCCCCCEEECCCCCEEEEEECC-CCCceEEEEECCCCCEE-Eeec--CCCCccCeEECCCCCE--EE
Confidence            88765433322 22222234567788777654110 12236888888876543 2322  2234567789999986  33


Q ss_pred             EecCCC---eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC
Q psy6859         155 SDQDSS---HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG  204 (261)
Q Consensus       155 ~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  204 (261)
                      ....++   .|.+||+. ++. ...+. . ........|+|++++|+..+.++
T Consensus       338 ~~~~~~~~~~i~~~d~~-~~~-~~~l~-~-~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       338 FVHREGGGFNIAVMDLD-GGG-ERVLT-D-TGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             EEEccCCceEEEEEeCC-CCC-eEEcc-C-CCCCCCceECCCCCEEEEEEeCC
Confidence            333333   68888887 543 33342 2 22335568999999887766544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=8e-12  Score=99.22  Aligned_cols=220  Identities=14%  Similarity=0.082  Sum_probs=132.4

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCC---CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCC--cEEEEE
Q psy6859           2 HRSPITHVVVTK-TDFVITASND---GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDK--AMKVFD   74 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg--~v~~wd   74 (261)
                      |...+...+|+| ++.|+..+.+   ..|.+|++.++..+.+..+   .+.+....|+|||+.|+ +.+.+|  .|.+||
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---CCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence            456788899999 8887765533   3688899987643333322   34455789999999887 444555  588889


Q ss_pred             ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      +.+++... +...........++++++.++...- ......|.++|+.+++... +....  .......|+|++..+++.
T Consensus       274 ~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~-~~g~~~iy~~d~~~g~~~~-lt~~~--~~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        274 LASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSD-RGGKPQIYKVNVNGGRAER-VTFVG--NYNARPRLSADGKTLVMV  348 (430)
T ss_pred             CCCCCeEE-cccCCCCcCCeEECCCCCEEEEEEC-CCCCceEEEEECCCCCEEE-eecCC--CCccceEECCCCCEEEEE
Confidence            88776443 2222222334567888887765411 0123467788888776433 22211  123356789999874333


Q ss_pred             EecCCC--eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcC-CC--eEEEeecccccccCCeeeeeecccc
Q psy6859         155 SDQDSS--HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK-AG--ILEYWSGYKQEFKFPKCVHFESKLD  229 (261)
Q Consensus       155 ~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~  229 (261)
                       ...++  .|.++|+. +++. ..+.  .........|+|+|+.|+..+. ++  .|.++++.                +
T Consensus       349 -~~~~~~~~l~~~dl~-tg~~-~~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~----------------g  407 (430)
T PRK00178        349 -HRQDGNFHVAAQDLQ-RGSV-RILT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN----------------G  407 (430)
T ss_pred             -EccCCceEEEEEECC-CCCE-EEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC----------------C
Confidence             33333  58888987 5543 3443  1222235689999998866553 33  35555553                3


Q ss_pred             cceeecCCCccceeeeeECCC
Q psy6859         230 TDLFEFAKNKTYPSGLSFSPD  250 (261)
Q Consensus       230 ~~~~~~~~~~~~v~~~~~s~~  250 (261)
                      ...+.+..+.+.+...+|+|-
T Consensus       408 ~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        408 RVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CceEECcCCCCCcCCCccCCC
Confidence            333445445567788888874

>KOG4497|consensus

Probab=99.53  E-value=5.6e-12  Score=90.89  Aligned_cols=228  Identities=14%  Similarity=0.144  Sum_probs=146.7

Q ss_pred             eEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceee
Q psy6859           6 ITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         6 v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~   82 (261)
                      |.-+.|..  -..|.....|+.|.+|++...  +....+......+..++|+|||+.++ +..-|-.|.+|.+.+.+...
T Consensus        51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQP--EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             hhheeeeccceeeeeeeeccceEEEEEeecc--eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            44566765  235667788999999999877  67777887888999999999996655 55568899999987643221


Q ss_pred             ee--------------------------------------------eccCcceeEEEEe---------------------
Q psy6859          83 MI--------------------------------------------KLDFTPLTVECIH---------------------   97 (261)
Q Consensus        83 ~~--------------------------------------------~~~~~~~~~~~~~---------------------   97 (261)
                      .-                                            +.+........++                     
T Consensus       129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe  208 (447)
T KOG4497|consen  129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE  208 (447)
T ss_pred             ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence            10                                            0000001111122                     


Q ss_pred             -----------ecCCceeeeeeecCCCCeEEEEEcCCCceeeEE------------------------------------
Q psy6859          98 -----------YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI------------------------------------  130 (261)
Q Consensus        98 -----------~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~------------------------------------  130 (261)
                                 |.++.++.    |+.|+.+++.+--+.++...+                                    
T Consensus       209 ~~lG~k~v~wsP~~qflav----GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~  284 (447)
T KOG4497|consen  209 RGLGLKFVEWSPCNQFLAV----GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL  284 (447)
T ss_pred             eccceeEEEeccccceEEe----eccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc
Confidence                       22222222    366777766543322211111                                    


Q ss_pred             ------------------------e----ecCCcceEEEEEEeCCCCceEEEEe--cCCCeEEEEEccCCCccceeeccC
Q psy6859         131 ------------------------K----LDFTPLTVECIHYLGDAIPTAAVSD--QDSSHVHIYDCKGNGTPLHVLDRL  180 (261)
Q Consensus       131 ------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~~~  180 (261)
                                              +    .......+-.++|++|..+  +++-  ..-+.+-+||++ ..+....+  .
T Consensus       285 ~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y--~aTrnd~~PnalW~Wdlq-~l~l~avL--i  359 (447)
T KOG4497|consen  285 EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY--AATRNDKYPNALWLWDLQ-NLKLHAVL--I  359 (447)
T ss_pred             ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE--EeeecCCCCceEEEEech-hhhhhhhh--h
Confidence                                    0    0000113556889999875  4443  234568999998 66665556  5


Q ss_pred             cccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       181 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      ...+|....|+|....|+.+.....+.+|...                +.......+..-.|..+.|..+|..++-++.|
T Consensus       360 Qk~piraf~WdP~~prL~vctg~srLY~W~ps----------------g~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kD  423 (447)
T KOG4497|consen  360 QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS----------------GPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKD  423 (447)
T ss_pred             hccceeEEEeCCCCceEEEEcCCceEEEEcCC----------------CceEEecCCCCceeeeEEecCCCcEEEEEcCC
Confidence            78899999999999988888878889999863                22222223344678999999999999999887

>KOG4547|consensus

Probab=99.53  E-value=1.6e-11  Score=94.66  Aligned_cols=188  Identities=14%  Similarity=0.169  Sum_probs=138.7

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeec---cccceeEEEEe--------------------eCCCEEEEEeCCCcE
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRS---HLGVIHSICTN--------------------YNGTLLCTVASDKAM   70 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~---~~~~v~~~~~~--------------------~~~~~l~s~~~dg~v   70 (261)
                      ..++|....||.+++|+...+  +....|..   -.+..++..|.                    .+...++-|...|.|
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~--~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKN--QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             hheEeecCCCCeEEEEEccCc--eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            679999999999999999876  44443322   12334444442                    122367888889999


Q ss_pred             EEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCc
Q psy6859          71 KVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIP  150 (261)
Q Consensus        71 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (261)
                      .+|++..++....+....+...+..+....+  +.+..|++.|..+..|+......+.....  .+..+.++.++||+..
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~~~~~~~~~--~~~~~~sl~is~D~~~  158 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEKVIIRIWKE--QKPLVSSLCISPDGKI  158 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccc--cCceEecCCceeEEEEecccceeeeeecc--CCCccceEEEcCCCCE
Confidence            9999999999888886665555554443221  23445669999999999999888777765  3447788999999864


Q ss_pred             eEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCC-----CCEEEE-EcCCCeEEEeeccc
Q psy6859         151 TAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPI-----YQVVVS-VDKAGILEYWSGYK  213 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~~~dg~i~iwd~~~  213 (261)
                        +++++  +.|++||+. +.+.+..|+ +|.++|+++.|.-+     |.++.+ ...+..+.+|-++.
T Consensus       159 --l~~as--~~ik~~~~~-~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  159 --LLTAS--RQIKVLDIE-TKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             --EEecc--ceEEEEEcc-CceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence              55554  789999999 999999998 99999999999877     666544 44566688887654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.2e-11  Score=98.22  Aligned_cols=218  Identities=13%  Similarity=0.038  Sum_probs=129.6

Q ss_pred             CCeEEEEEcC-CCeEEEecC-C--CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEE-EeCCCc--EEEEEcc
Q psy6859           4 SPITHVVVTK-TDFVITASN-D--GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCT-VASDKA--MKVFDVI   76 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~-d--~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~--v~~wd~~   76 (261)
                      ..+.+..|+| ++.|+..+. +  ..|.+||+.++..+.+..+.   +......|+|||+.|+. .+.++.  |.++|+.
T Consensus       218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            4567889999 887776543 2  35888888776333333333   33457899999998765 455664  7777887


Q ss_pred             ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859          77 NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                      +++... +..+........++++++.++...- ......|.++|+.+++... +...  ........|+|++..+++ +.
T Consensus       295 tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~-~~g~~~Iy~~dl~~g~~~~-Lt~~--g~~~~~~~~SpDG~~l~~-~~  368 (448)
T PRK04792        295 TKALTR-ITRHRAIDTEPSWHPDGKSLIFTSE-RGGKPQIYRVNLASGKVSR-LTFE--GEQNLGGSITPDGRSMIM-VN  368 (448)
T ss_pred             CCCeEE-CccCCCCccceEECCCCCEEEEEEC-CCCCceEEEEECCCCCEEE-EecC--CCCCcCeeECCCCCEEEE-EE
Confidence            765443 2222223344567888887765411 1123467777887776433 2221  112234688999987443 33


Q ss_pred             cCCC--eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc-CCCe--EEEeecccccccCCeeeeeecccccc
Q psy6859         157 QDSS--HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD-KAGI--LEYWSGYKQEFKFPKCVHFESKLDTD  231 (261)
Q Consensus       157 ~~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~  231 (261)
                      ..++  .|.++|+. +++. ..+. .. .......|+|+|+.|+... .++.  +.+++..                ++.
T Consensus       369 ~~~g~~~I~~~dl~-~g~~-~~lt-~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~----------------G~~  428 (448)
T PRK04792        369 RTNGKFNIARQDLE-TGAM-QVLT-ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID----------------GRF  428 (448)
T ss_pred             ecCCceEEEEEECC-CCCe-EEcc-CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC----------------CCc
Confidence            3344  45566776 5443 3333 21 1223458999999876544 4443  5555642                455


Q ss_pred             eeecCCCccceeeeeECCC
Q psy6859         232 LFEFAKNKTYPSGLSFSPD  250 (261)
Q Consensus       232 ~~~~~~~~~~v~~~~~s~~  250 (261)
                      ...+..+.+.+...+|+|-
T Consensus       429 ~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        429 KARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             eEECcCCCCCcCCCccCCC
Confidence            5566666667788899883

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.5e-11  Score=96.46  Aligned_cols=207  Identities=8%  Similarity=0.035  Sum_probs=125.6

Q ss_pred             eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC---CcEEEEEccccceeeeeeccCcceeEEEEeecCC
Q psy6859          25 HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD---KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD  101 (261)
Q Consensus        25 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (261)
                      .|.++|.+..  . .+.+..+...+....|+|||+.|+..+.+   ..|.+||+.+++........ .......++++++
T Consensus       180 ~l~~~d~~g~--~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGA--R-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-GLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCC--C-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-CCcCCeEECCCCC
Confidence            4667777654  2 23444566788999999999998876643   36889999887654432222 2233467888888


Q ss_pred             ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC--eEEEEEccCCCccceeecc
Q psy6859         102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS--HVHIYDCKGNGTPLHVLDR  179 (261)
Q Consensus       102 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~  179 (261)
                      .++.. .+...+..|.+||+.+++... +..  .........|+|++..+++ +...++  .|+++|+. +++. ..+. 
T Consensus       256 ~la~~-~~~~g~~~Iy~~d~~~~~~~~-lt~--~~~~~~~~~~spDg~~i~f-~s~~~g~~~iy~~d~~-~g~~-~~lt-  327 (430)
T PRK00178        256 KLAFV-LSKDGNPEIYVMDLASRQLSR-VTN--HPAIDTEPFWGKDGRTLYF-TSDRGGKPQIYKVNVN-GGRA-ERVT-  327 (430)
T ss_pred             EEEEE-EccCCCceEEEEECCCCCeEE-ccc--CCCCcCCeEECCCCCEEEE-EECCCCCceEEEEECC-CCCE-EEee-
Confidence            77643 111233478888998876443 222  2223456789999986433 333333  57777776 5543 3332 


Q ss_pred             CcccCeEEEEEcCCCCEEEEEcC-CC--eEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEE
Q psy6859         180 LHTKPVVLIKFNPIYQVVVSVDK-AG--ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       180 ~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  256 (261)
                      ..........|+|+|++|+..+. ++  .|.++|+.++               +. ..+.. ........|+|||++|+.
T Consensus       328 ~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg---------------~~-~~lt~-~~~~~~p~~spdg~~i~~  390 (430)
T PRK00178        328 FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG---------------SV-RILTD-TSLDESPSVAPNGTMLIY  390 (430)
T ss_pred             cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC---------------CE-EEccC-CCCCCCceECCCCCEEEE
Confidence            12223345789999998876653 33  4777887542               21 22221 112235689999999987


Q ss_pred             eecC
Q psy6859         257 ISMD  260 (261)
Q Consensus       257 ~~~D  260 (261)
                      .+.+
T Consensus       391 ~~~~  394 (430)
T PRK00178        391 ATRQ  394 (430)
T ss_pred             EEec
Confidence            7654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.51  E-value=3.6e-10  Score=82.71  Aligned_cols=244  Identities=9%  Similarity=0.100  Sum_probs=157.0

Q ss_pred             CCCeEEEEEcC-CCeEEEecC---CCeEEEEeccC--CceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CCcEEEEEc
Q psy6859           3 RSPITHVVVTK-TDFVITASN---DGHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DKAMKVFDV   75 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~---d~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~   75 (261)
                      .+..+-|+|+| ++.|.++-.   +|.|.-|.++.  +....+........+-+.+++++++++++++.. -|.|.++-+
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~  118 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPL  118 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence            35567889999 667777644   57788887775  333444333323334488999999999999875 578999998


Q ss_pred             cc-cceeee---eeccC---------cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC-CcceEEE
Q psy6859          76 IN-FDMINM---IKLDF---------TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF-TPLTVEC  141 (261)
Q Consensus        76 ~~-~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~  141 (261)
                      +. |.+...   ++...         .......+.|+++.+++...   .--.|.+|++..+.....-.... .....+-
T Consensus       119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL---G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH  195 (346)
T COG2706         119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL---GTDRIFLYDLDDGKLTPADPAEVKPGAGPRH  195 (346)
T ss_pred             ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec---CCceEEEEEcccCccccccccccCCCCCcce
Confidence            65 433222   21110         11456677788888777622   34578999998775433222111 2234588


Q ss_pred             EEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec------c--CcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecc
Q psy6859         142 IHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD------R--LHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGY  212 (261)
Q Consensus       142 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~--~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~  212 (261)
                      +.|+|+++.. .+..--+++|-+|........+..++      .  ........|.++|||++|+++. ....|.+|.+.
T Consensus       196 i~FHpn~k~a-Y~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         196 IVFHPNGKYA-YLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             EEEcCCCcEE-EEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            9999999964 44455689999999983223333332      0  1245667899999999997765 44578888875


Q ss_pred             cccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         213 KQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ...           ...+.+.....+....+...|+|.|++|+++..|+
T Consensus       275 ~~~-----------g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         275 PDG-----------GKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             CCC-----------CEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence            421           00122223334556678999999999999998763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=3.9e-11  Score=95.28  Aligned_cols=205  Identities=8%  Similarity=0.015  Sum_probs=120.8

Q ss_pred             eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-C--cEEEEEccccceeeeeeccCcceeEEEEeecCC
Q psy6859          25 HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-K--AMKVFDVINFDMINMIKLDFTPLTVECIHYLGD  101 (261)
Q Consensus        25 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (261)
                      .+.++|.+..+  . +.+..+...+....|+|||+.|+..+.+ +  .|.+||+.+++......... ......++++++
T Consensus       199 ~l~i~d~dG~~--~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g-~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYN--E-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG-INGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCC--c-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC-CcCCeeECCCCC
Confidence            56666766542  2 3344456788899999999998876543 2  58888988776533222221 223457888988


Q ss_pred             ceeeeeeecCCCC--eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC--eEEEEEccCCCccceee
Q psy6859         102 AIPTAAVSDQDSS--RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS--HVHIYDCKGNGTPLHVL  177 (261)
Q Consensus       102 ~~~~~~~s~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~  177 (261)
                      .++..   .+.++  .|.++|+.+++.... ..  .........|+|++..++ ++...++  .|+++|+. +++. ..+
T Consensus       275 ~La~~---~~~~g~~~Iy~~dl~tg~~~~l-t~--~~~~~~~p~wSpDG~~I~-f~s~~~g~~~Iy~~dl~-~g~~-~~L  345 (448)
T PRK04792        275 KLALV---LSKDGQPEIYVVDIATKALTRI-TR--HRAIDTEPSWHPDGKSLI-FTSERGGKPQIYRVNLA-SGKV-SRL  345 (448)
T ss_pred             EEEEE---EeCCCCeEEEEEECCCCCeEEC-cc--CCCCccceEECCCCCEEE-EEECCCCCceEEEEECC-CCCE-EEE
Confidence            77653   13444  588889887764332 22  222345678999998643 3333334  46666775 4543 333


Q ss_pred             ccCcccCeEEEEEcCCCCEEEEEcC-CCe--EEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceE
Q psy6859         178 DRLHTKPVVLIKFNPIYQVVVSVDK-AGI--LEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF  254 (261)
Q Consensus       178 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  254 (261)
                      . .........+|+|||++|+..+. ++.  |.++|+.+               ++. ..+... .......|+|||+.|
T Consensus       346 t-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~---------------g~~-~~lt~~-~~d~~ps~spdG~~I  407 (448)
T PRK04792        346 T-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET---------------GAM-QVLTST-RLDESPSVAPNGTMV  407 (448)
T ss_pred             e-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC---------------CCe-EEccCC-CCCCCceECCCCCEE
Confidence            2 12222345789999998866543 444  44456543               221 222211 122345899999988


Q ss_pred             EEeecC
Q psy6859         255 VTISMD  260 (261)
Q Consensus       255 ~s~~~D  260 (261)
                      +..+.+
T Consensus       408 ~~~~~~  413 (448)
T PRK04792        408 IYSTTY  413 (448)
T ss_pred             EEEEec
Confidence            876643

>KOG1354|consensus

Probab=99.48  E-value=5.7e-12  Score=91.30  Aligned_cols=203  Identities=13%  Similarity=0.211  Sum_probs=134.0

Q ss_pred             CCeEEEEEcC-C--CeEEEecCCCeEEEEeccCCceee---------------------------------eEEe-eccc
Q psy6859           4 SPITHVVVTK-T--DFVITASNDGHIKFWKKQEEGIEF---------------------------------VKHF-RSHL   46 (261)
Q Consensus         4 ~~v~~~~~~~-~--~~l~s~~~d~~i~iw~~~~~~~~~---------------------------------~~~~-~~~~   46 (261)
                      ..|+.+.|.+ +  ..++..+.|.+|++|.+...+.+.                                 .+.+ .+|+
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            4578889987 3  467777899999999986532111                                 1111 3477


Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-ceeeeeeccC-------cceeEEEEeecCCceeeeeeecCCCCeEEE
Q psy6859          47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINF-DMINMIKLDF-------TPLTVECIHYLGDAIPTAAVSDQDSSRVHI  118 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i  118 (261)
                      --|+++.++.|.+.++++ .|-.|.+|++.-- +.........       ..++...++|..-.++.  +| +..|+|++
T Consensus       165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~--YS-SSKGtIrL  240 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFV--YS-SSKGTIRL  240 (433)
T ss_pred             eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEE--Ee-cCCCcEEE
Confidence            789999999999888875 5678999998622 2111111111       12334444443332222  22 78999999


Q ss_pred             EEcCCCcee----eEEeecCCc----------ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCccc-
Q psy6859         119 YDCKGNDMI----NMIKLDFTP----------LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTK-  183 (261)
Q Consensus       119 ~d~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-  183 (261)
                      -|++...+.    +.++.+..|          ..|..+.|++.|.+  +++-. --+|++||+....+++.+++ .|.. 
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGry--ilsRD-yltvk~wD~nme~~pv~t~~-vh~~l  316 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY--ILSRD-YLTVKLWDLNMEAKPVETYP-VHEYL  316 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcE--EEEec-cceeEEEeccccCCcceEEe-ehHhH
Confidence            999954321    122222122          25788999999986  55543 47899999976888888876 5431 


Q ss_pred             -----------Ce---EEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         184 -----------PV---VLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       184 -----------~v---~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                                 .|   ..++|+-++.++++|+....++++++..+
T Consensus       317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                       22   34689999999999999999999996554

>KOG0280|consensus

Probab=99.47  E-value=1.8e-11  Score=86.89  Aligned_cols=209  Identities=9%  Similarity=0.068  Sum_probs=134.3

Q ss_pred             CCCeEEEEeccCCceeeeEEee-ccccceeEEEEee---CCC-EEEEEeCCCcEEEEEccccceeeeee------ccCcc
Q psy6859          22 NDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNY---NGT-LLCTVASDKAMKVFDVINFDMINMIK------LDFTP   90 (261)
Q Consensus        22 ~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~---~~~-~l~s~~~dg~v~~wd~~~~~~~~~~~------~~~~~   90 (261)
                      ..|.+.++++.+....+..+++ .-++.+..+.|..   ++. .++-+..+|.|.++..........+.      .....
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            3467888988775333322222 1235677788863   444 56666788999999875433222222      11111


Q ss_pred             eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCC
Q psy6859          91 LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN  170 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  170 (261)
                      .....+...+..+++.    ..+|.+.+-+..............+...+....|+..... ++.+|++|+.+..||+|..
T Consensus       124 ~lslD~~~~~~~i~vs----~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p  198 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVS----DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIP  198 (339)
T ss_pred             eeEEEeeccCceEEEE----cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCC
Confidence            2234455555554444    6788888666555544443333345556666777655553 5889999999999999954


Q ss_pred             CccceeeccCcccCeEEEEEcC-CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECC
Q psy6859         171 GTPLHVLDRLHTKPVVLIKFNP-IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP  249 (261)
Q Consensus       171 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  249 (261)
                      ++.+..-...|...|.+|.-+| .+.+|++|+.|-.|++||.++              .+++++.-. -.+.|+.+.++|
T Consensus       199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn--------------m~kPl~~~~-v~GGVWRi~~~p  263 (339)
T KOG0280|consen  199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN--------------MGKPLFKAK-VGGGVWRIKHHP  263 (339)
T ss_pred             cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc--------------ccCccccCc-cccceEEEEecc
Confidence            5555442237899999998876 466999999999999999974              356665443 347889999888


Q ss_pred             C
Q psy6859         250 D  250 (261)
Q Consensus       250 ~  250 (261)
                      .
T Consensus       264 ~  264 (339)
T KOG0280|consen  264 E  264 (339)
T ss_pred             h
Confidence            4

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.47  E-value=5.2e-12  Score=90.52  Aligned_cols=236  Identities=14%  Similarity=0.216  Sum_probs=144.7

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc---eeeeEEeeccc------------cceeEEEEeeCC--CEEEEEe
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEG---IEFVKHFRSHL------------GVIHSICTNYNG--TLLCTVA   65 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~------------~~v~~~~~~~~~--~~l~s~~   65 (261)
                      +.|+++.|.. |.+|++|...|.|.++.-+...   .+....+++|.            ..|..+.|..++  ..++..+
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst  106 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST  106 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence            5689999998 9999999999999999865431   23444566664            357888887543  3566678


Q ss_pred             CCCcEEEEEccccce--ee--------------------eee-------------------ccCcceeEEEEe--ecCCc
Q psy6859          66 SDKAMKVFDVINFDM--IN--------------------MIK-------------------LDFTPLTVECIH--YLGDA  102 (261)
Q Consensus        66 ~dg~v~~wd~~~~~~--~~--------------------~~~-------------------~~~~~~~~~~~~--~~~~~  102 (261)
                      .|.+|++|.+.....  +.                    ++.                   ...++..+..++  .+...
T Consensus       107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et  186 (460)
T COG5170         107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET  186 (460)
T ss_pred             CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence            999999999865310  00                    000                   011111122222  22222


Q ss_pred             eeeeeeecCCCCeEEEEEcCCCce-eeEEeecCC-----cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC-----
Q psy6859         103 IPTAAVSDQDSSRVHIYDCKGNDM-INMIKLDFT-----PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG-----  171 (261)
Q Consensus       103 ~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-----  171 (261)
                      +++     ..|-.|.+|++.-... ........+     ..-|++..|+|.....++.+ +..|.|++-|+|...     
T Consensus       187 ~lS-----aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS-sSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         187 LLS-----ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS-SSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             eee-----ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe-cCCCcEEehhhhhhhhccCc
Confidence            222     4778899999874322 222222111     12467788899877655555 458999999998321     


Q ss_pred             ccceeec---------cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc---
Q psy6859         172 TPLHVLD---------RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK---  239 (261)
Q Consensus       172 ~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  239 (261)
                      +.+....         ..-...|..+.|+|+|+++++-+. -++++||++..              ..+++++.-|.   
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~--------------k~pikTi~~h~~l~  325 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA--------------KNPIKTIPMHCDLM  325 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc--------------cCCceeechHHHHH
Confidence            1111111         012356788999999999998775 46999999753              33444443222   


Q ss_pred             ---------cce---eeeeECCCCceEEEeecC
Q psy6859         240 ---------TYP---SGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       240 ---------~~v---~~~~~s~~~~~l~s~~~D  260 (261)
                               ..|   ..+.||.|.+.+++||..
T Consensus       326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~  358 (460)
T COG5170         326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYS  358 (460)
T ss_pred             HHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence                     122   347788888888888764

>KOG2321|consensus

Probab=99.47  E-value=3.8e-12  Score=97.98  Aligned_cols=194  Identities=14%  Similarity=0.184  Sum_probs=142.6

Q ss_pred             EEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeec
Q psy6859           8 HVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKL   86 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~   86 (261)
                      .++++. .--|..++....|.-.+++.+  ..+..|....+.++++..++-..+|++|+.+|.|-.||.+..+.+..+..
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqG--rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQG--RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEcccc--ccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence            455554 323444444556777788877  78888877778999999999888999999999999999998877766653


Q ss_pred             cCc----c-------eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          87 DFT----P-------LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        87 ~~~----~-------~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      ...    +       ++.+.+..+|=.+.+    |+.+|.+.|||++..+++..-. +.....|..+.|.+....-.+++
T Consensus       216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aV----Gts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S  290 (703)
T KOG2321|consen  216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAV----GTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVS  290 (703)
T ss_pred             ccccCCCccccccCcceEEEecCCceeEEe----eccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEe
Confidence            322    1       333444433333333    4899999999999988766543 34556788899977643333555


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      . +...++|||-. ++++...++  ....++.+++-|++-+++++-.++.+..|=+.
T Consensus       291 ~-Dk~~~kiWd~~-~Gk~~asiE--pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  291 M-DKRILKIWDEC-TGKPMASIE--PTSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             c-chHHhhhcccc-cCCceeecc--ccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            4 47789999998 999999995  66669999999999999999988888777654

>KOG2314|consensus

Probab=99.47  E-value=2.6e-11  Score=93.21  Aligned_cols=225  Identities=16%  Similarity=0.187  Sum_probs=137.5

Q ss_pred             EEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----------CcEEEEE
Q psy6859           7 THVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----------KAMKVFD   74 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------g~v~~wd   74 (261)
                      +-+.||| |.||+|-..-| |.+|--.+-  ..++.+. |+ .|.-+.|||..+||+|-+..           ..++|||
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESF--DRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccH--HHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            4588999 99999877754 568865543  4444554 53 57889999999999987631           4699999


Q ss_pred             ccccceeeeeeccCcc---eeEEEEeecCCceeeeeeecCCCCeEEEEEcC-----------------------------
Q psy6859          75 VINFDMINMIKLDFTP---LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK-----------------------------  122 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-----------------------------  122 (261)
                      +.+|...+.+.....+   -....++.++++++.+     ....|.||+..                             
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm-----~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM-----TGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEe-----ccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence            9999988887652211   2233444454444433     11222222211                             


Q ss_pred             ----C--------------CceeeEE-----------------------------------------eecC---------
Q psy6859         123 ----G--------------NDMINMI-----------------------------------------KLDF---------  134 (261)
Q Consensus       123 ----~--------------~~~~~~~-----------------------------------------~~~~---------  134 (261)
                          +              ++.++..                                         ....         
T Consensus       364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve  443 (698)
T KOG2314|consen  364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE  443 (698)
T ss_pred             EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee
Confidence                1              0000000                                         0000         


Q ss_pred             CcceEEEEEEeCCCCceEEEEecC-CCeEEEEEccCCC---ccceeeccCcccCeEEEEEcCCCCEEEEE---cCCCeEE
Q psy6859         135 TPLTVECIHYLGDAIPTAAVSDQD-SSHVHIYDCKGNG---TPLHVLDRLHTKPVVLIKFNPIYQVVVSV---DKAGILE  207 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~  207 (261)
                      -...+..++|.|.+....+++|.. ..++.+|.+..+.   +++..+.   ....+.+.|+|.|++++.+   +..|.+.
T Consensus       444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsPkG~fvvva~l~s~~g~l~  520 (698)
T KOG2314|consen  444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSPKGRFVVVAALVSRRGDLE  520 (698)
T ss_pred             cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcCCCcEEEEEEecccccceE
Confidence            012466778888888766666643 4568888887222   3344553   3567889999999988665   4578899


Q ss_pred             EeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         208 YWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       208 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ++|+.-               ..+...-.......+.+.|.|.|+|+++++.
T Consensus       521 F~D~~~---------------a~~k~~~~~eh~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  521 FYDTDY---------------ADLKDTASPEHFAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             EEecch---------------hhhhhccCccccccccceECCCCCEEEEeee
Confidence            999742               1111111111234578999999999999875

>KOG0974|consensus

Probab=99.47  E-value=1.7e-11  Score=100.26  Aligned_cols=189  Identities=14%  Similarity=0.036  Sum_probs=138.4

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcc-eeEEEEe-ecCCceeeeeeecCCCCeEEEEEcCCC
Q psy6859          47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTP-LTVECIH-YLGDAIPTAAVSDQDSSRVHIYDCKGN  124 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~s~~~d~~i~i~d~~~~  124 (261)
                      +.|....+..+.+.++....++.+.+||...+.....+...... .....+. ...+.+.  .++|+--+.|.+|+....
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~--i~~gsv~~~iivW~~~~d  165 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELY--IASGSVFGEIIVWKPHED  165 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEE--EEeccccccEEEEecccc
Confidence            44555566667778999999999999999887776665533221 1111111 1222222  234578899999998843


Q ss_pred             ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccce-eeccCcccCeEEEEEcCCCCEEEEEcCC
Q psy6859         125 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLH-VLDRLHTKPVVLIKFNPIYQVVVSVDKA  203 (261)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d  203 (261)
                      +.-.  ....+.+.+..+.++.++.+  +++.++|.++++|++. +.+... .. .+|.+.|..++|.|+  .+++++.|
T Consensus       166 n~p~--~l~GHeG~iF~i~~s~dg~~--i~s~SdDRsiRlW~i~-s~~~~~~~~-fgHsaRvw~~~~~~n--~i~t~ged  237 (967)
T KOG0974|consen  166 NKPI--RLKGHEGSIFSIVTSLDGRY--IASVSDDRSIRLWPID-SREVLGCTG-FGHSARVWACCFLPN--RIITVGED  237 (967)
T ss_pred             CCcc--eecccCCceEEEEEccCCcE--EEEEecCcceeeeecc-cccccCccc-ccccceeEEEEeccc--eeEEeccc
Confidence            3322  33346778999999999987  8999999999999998 665554 32 289999999999999  89999999


Q ss_pred             CeEEEeecccccccCCeeeeeecccccceeecCCCc-cceeeeeECCCCceEEEeecCC
Q psy6859         204 GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK-TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       204 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+.++|+..                +..+..+.+|. ..|+.++..++...+++++.||
T Consensus       238 ctcrvW~~~----------------~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds  280 (967)
T KOG0974|consen  238 CTCRVWGVN----------------GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS  280 (967)
T ss_pred             eEEEEEecc----------------cceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence            999999764                34445666665 4689999999999999999886

>KOG4190|consensus

Probab=99.47  E-value=2e-13  Score=104.94  Aligned_cols=204  Identities=16%  Similarity=0.228  Sum_probs=150.0

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-----eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG-----IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      ||++.|+.++--. .+-+++++.|.+|++|.+...+     ..+..+++.|+.+|.++.|..+.+++++  .||.+.+||
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWD  810 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWD  810 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeec
Confidence            7999999887666 7789999999999999986522     2466788999999999999999888875  578899999


Q ss_pred             ccccceeeeeec---cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec---CCcceEEEEEEeCCC
Q psy6859          75 VINFDMINMIKL---DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD---FTPLTVECIHYLGDA  148 (261)
Q Consensus        75 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  148 (261)
                      .--++.+..+..   +.....+.++..-...++..  .++...+|+++|.+..+....++..   .....+++++..+.+
T Consensus       811 PFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliA--gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G  888 (1034)
T KOG4190|consen  811 PFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIA--GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG  888 (1034)
T ss_pred             ccccchhHhhhcCcccCCCceeEecccCcchheee--eccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence            877776654432   22223344444323333222  2378899999999988776666543   233568889998988


Q ss_pred             CceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEE-eeccc
Q psy6859         149 IPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEY-WSGYK  213 (261)
Q Consensus       149 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~  213 (261)
                      ..  ++.+-.+|.|.+.|.+ +++.+..+. ..+.....++ .|..+.|+....|.++.+ |...+
T Consensus       889 N~--lAa~LSnGci~~LDaR-~G~vINswr-pmecdllqla-apsdq~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  889 NK--LAAALSNGCIAILDAR-NGKVINSWR-PMECDLLQLA-APSDQALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             ch--hhHHhcCCcEEEEecC-CCceeccCC-cccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence            87  7778889999999999 999888886 6665555554 356667777777877877 76543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=8e-11  Score=92.81  Aligned_cols=212  Identities=8%  Similarity=-0.009  Sum_probs=120.8

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCE--E-EEEeCCC--cEEEEEccccceeeeeeccCcceeEEEEee
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL--L-CTVASDK--AMKVFDVINFDMINMIKLDFTPLTVECIHY   98 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l-~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~   98 (261)
                      ..|.+.|.+..+  . +.+......+..-.|+|||+.  + ++...+|  .|.+.++..++..+....... .....++|
T Consensus       165 ~~l~~~d~dG~~--~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~-~~~p~wSP  240 (428)
T PRK01029        165 GELWSVDYDGQN--L-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN-QLMPTFSP  240 (428)
T ss_pred             ceEEEEcCCCCC--c-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC-ccceEECC
Confidence            356666666542  2 233334455677799999975  2 2444443  577778877764443332222 23457889


Q ss_pred             cCCceeeeee-ecCCCCeEEEEEcCCC---ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEE--EccCCCc
Q psy6859          99 LGDAIPTAAV-SDQDSSRVHIYDCKGN---DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIY--DCKGNGT  172 (261)
Q Consensus        99 ~~~~~~~~~~-s~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~--d~~~~~~  172 (261)
                      +|+.++...- .+..+-.+.+|++..+   +.......  .........|+||+..++++ ...++...+|  ++...+.
T Consensus       241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~--~~~~~~~p~wSPDG~~Laf~-s~~~g~~~ly~~~~~~~g~  317 (428)
T PRK01029        241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE--AFGTQGNPSFSPDGTRLVFV-SNKDGRPRIYIMQIDPEGQ  317 (428)
T ss_pred             CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC--CCCCcCCeEECCCCCEEEEE-ECCCCCceEEEEECccccc
Confidence            9988766511 1122334555777653   22222221  11223467899999874333 3345654455  4431223


Q ss_pred             cceeeccCcccCeEEEEEcCCCCEEEEEcCC---CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECC
Q psy6859         173 PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA---GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP  249 (261)
Q Consensus       173 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  249 (261)
                      ....+. .+...+....|+|||+.|+..+.+   ..|.+||+.++               +. ..+......+....|+|
T Consensus       318 ~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g---------------~~-~~Lt~~~~~~~~p~wSp  380 (428)
T PRK01029        318 SPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG---------------RD-YQLTTSPENKESPSWAI  380 (428)
T ss_pred             ceEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC---------------Ce-EEccCCCCCccceEECC
Confidence            344454 444567788999999988765432   36889998542               22 22332234567789999


Q ss_pred             CCceEEEeec
Q psy6859         250 DGNKFVTISM  259 (261)
Q Consensus       250 ~~~~l~s~~~  259 (261)
                      ||++|+..+.
T Consensus       381 DG~~L~f~~~  390 (428)
T PRK01029        381 DSLHLVYSAG  390 (428)
T ss_pred             CCCEEEEEEC
Confidence            9998875543

>KOG2041|consensus

Probab=99.45  E-value=4.2e-12  Score=100.47  Aligned_cols=231  Identities=13%  Similarity=0.127  Sum_probs=160.7

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-------------eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCc
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEG-------------IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKA   69 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~   69 (261)
                      ....|++|+. ..++|.|+.||.+++..+.+..             ...-+++.+|+..|.-+.|+.+.+.|-+...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            3578999998 8899999999999999876521             1233567899999999999999999999999999


Q ss_pred             EEEEEccccceeeeeeccC--cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee-EEeecCCcceEEEEEEeC
Q psy6859          70 MKVFDVINFDMINMIKLDF--TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN-MIKLDFTPLTVECIHYLG  146 (261)
Q Consensus        70 v~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~  146 (261)
                      |.+|-+..++...++..+.  ..+..+++..+|..+..+    -.||.|.+=.+...+.-. .++    ......+.|++
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIv----YeDGavIVGsvdGNRIwgKeLk----g~~l~hv~ws~  166 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIV----YEDGAVIVGSVDGNRIWGKELK----GQLLAHVLWSE  166 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEE----EccCCEEEEeeccceecchhcc----hheccceeecc
Confidence            9999999887665544332  335556677788888776    678888777666543211 111    12345778899


Q ss_pred             CCCceEEEEecCCCeEEEEEccCCCcc------ceeec---cCcccCeEEEEEc--------CCCCEEEEEcCCCeEEEe
Q psy6859         147 DAIPTAAVSDQDSSHVHIYDCKGNGTP------LHVLD---RLHTKPVVLIKFN--------PIYQVVVSVDKAGILEYW  209 (261)
Q Consensus       147 ~~~~~~~~~~~~d~~i~i~d~~~~~~~------~~~~~---~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~iw  209 (261)
                      |...  ++.+-.+|.+.+||...+...      .....   ......|..+.|.        |+...|+.+-.+|.+.|-
T Consensus       167 D~~~--~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM  244 (1189)
T KOG2041|consen  167 DLEQ--ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM  244 (1189)
T ss_pred             cHHH--HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence            9875  555566899999998622111      00110   0112235555553        577789999999988877


Q ss_pred             ecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         210 SGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      .-.+              ...++..-.  ...+....|+|+|..||.+|.|
T Consensus       245 R~eN--------------D~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  245 RSEN--------------DPEPVVVDT--GMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             hhcC--------------CCCCeEEec--ccEeecceecCCCcEEEEccCc
Confidence            5432              233333222  2678899999999999999876

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=2.9e-09  Score=82.03  Aligned_cols=228  Identities=12%  Similarity=0.134  Sum_probs=139.7

Q ss_pred             EEEecCC----CeEEEEeccC--CceeeeEEeeccccceeEEEEeeCCCEEEEEeC----CCcEEEEEcccc--c--eee
Q psy6859          17 VITASND----GHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS----DKAMKVFDVINF--D--MIN   82 (261)
Q Consensus        17 l~s~~~d----~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----dg~v~~wd~~~~--~--~~~   82 (261)
                      ++.|+..    +.|.+|+++.  +....+..+. -......++++|++++|.++..    ++.|..|++...  +  .+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            3445555    7999998843  4334444433 3345578899999999998876    568999998764  2  333


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEee-----------cCCcceEEEEEEeCCCCc
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKL-----------DFTPLTVECIHYLGDAIP  150 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  150 (261)
                      .........+.+.+.++++.++.+   .-.++.|.++++... ........           ........++.++|++.+
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~va---ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~  157 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVA---NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF  157 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEE---ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEE---EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE
Confidence            333334444567777888877765   246899999999873 33222111           012335789999999986


Q ss_pred             eEEEEecCCCeEEEEEccCCCc-cc---eeeccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeecccccccCCeeeeee
Q psy6859         151 TAAVSDQDSSHVHIYDCKGNGT-PL---HVLDRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYKQEFKFPKCVHFE  225 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~  225 (261)
                      + +++.-....|.+|++. ... .+   ..+..........+.|+|+++++++. -.++.|.++++........      
T Consensus       158 v-~v~dlG~D~v~~~~~~-~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~------  229 (345)
T PF10282_consen  158 V-YVPDLGADRVYVYDID-DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT------  229 (345)
T ss_dssp             E-EEEETTTTEEEEEEE--TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE------
T ss_pred             E-EEEecCCCEEEEEEEe-CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee------
Confidence            4 4555556789999997 433 12   22222455678999999999988554 5788899999862111000      


Q ss_pred             cccccceeecC-C--CccceeeeeECCCCceEEEee
Q psy6859         226 SKLDTDLFEFA-K--NKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       226 ~~~~~~~~~~~-~--~~~~v~~~~~s~~~~~l~s~~  258 (261)
                        ..+.+..+. +  .......++++|||++|.++.
T Consensus       230 --~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn  263 (345)
T PF10282_consen  230 --EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN  263 (345)
T ss_dssp             --EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE
T ss_pred             --EEEEeeeccccccccCCceeEEEecCCCEEEEEe
Confidence              001111111 1  123577899999999988764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4532|consensus

Probab=99.45  E-value=1.1e-10  Score=82.12  Aligned_cols=233  Identities=10%  Similarity=-0.001  Sum_probs=147.7

Q ss_pred             EEEEcCC------CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEe-eCCCEEEEEeCCCcEEEEEccccce
Q psy6859           8 HVVVTKT------DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTN-YNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         8 ~~~~~~~------~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      .+.|.|+      .+||.|+.-|...+|...+.+ ........|...|+-+.=. ...-.+..++.|.++++.++.-+..
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            3556552      479999999999999998642 2333334444433221111 1122466678899999999865543


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ........-....+.+++++++..++    +....|..|.+... +.+..+........-.+..|+.....  ++++..|
T Consensus       151 ~~~~h~~~~~~ns~~~snd~~~~~~V----gds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~--FAv~~Qd  224 (344)
T KOG4532|consen  151 KFAVHNQNLTQNSLHYSNDPSWGSSV----GDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ--FAVVFQD  224 (344)
T ss_pred             cceeeccccceeeeEEcCCCceEEEe----cCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce--EEEEecC
Confidence            33333222235677888899988888    88899999988754 33333333333334467778777754  8889999


Q ss_pred             CeEEEEEccCCCccceeec---cCcccCeEEEEEcCCCC--EEEEEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859         160 SHVHIYDCKGNGTPLHVLD---RLHTKPVVLIKFNPIYQ--VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                      |++.|||++..+.+.....   +.|++.+..+.|+|-|.  +|+..-.-+.+.+.|+++...            -+.+..
T Consensus       225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~------------~q~I~i  292 (344)
T KOG4532|consen  225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN------------HQVIVI  292 (344)
T ss_pred             CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce------------eeEEec
Confidence            9999999996555554432   36899999999999775  555555667899999976421            111111


Q ss_pred             ----cCCCc-cceeeeeECCCCceEEEeec
Q psy6859         235 ----FAKNK-TYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       235 ----~~~~~-~~v~~~~~s~~~~~l~s~~~  259 (261)
                          ...|. ..|..-.|+.++..+.+.++
T Consensus       293 ~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  293 PDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             CccccccccccccccccccCCCcccccccc
Confidence                11233 33777777777665554443

>KOG1334|consensus

Probab=99.44  E-value=1.3e-12  Score=98.46  Aligned_cols=204  Identities=15%  Similarity=0.186  Sum_probs=146.9

Q ss_pred             CCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEee-cccc---ceeEEEEeeCCC-EEEEEeCCCcEEEEE
Q psy6859           2 HRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFR-SHLG---VIHSICTNYNGT-LLCTVASDKAMKVFD   74 (261)
Q Consensus         2 H~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~---~v~~~~~~~~~~-~l~s~~~dg~v~~wd   74 (261)
                      |.++|..++.-|  ..-|.+++.|+.+.-.|+...........+ .+..   ....++..|... ++++++.|..+++||
T Consensus       231 h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD  310 (559)
T KOG1334|consen  231 HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYD  310 (559)
T ss_pred             ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhc
Confidence            889999999998  467899999999999998765322222222 2333   457788888544 899999999999999


Q ss_pred             cccccee------eeee------ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC--C----------cee-eE
Q psy6859          75 VINFDMI------NMIK------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG--N----------DMI-NM  129 (261)
Q Consensus        75 ~~~~~~~------~~~~------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--~----------~~~-~~  129 (261)
                      .+.-...      ..+.      .....+.++.++.++..+++.    -.|-.|+++.-.-  +          ... +.
T Consensus       311 ~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS----YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~v  386 (559)
T KOG1334|consen  311 QRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS----YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRV  386 (559)
T ss_pred             ccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee----ecccceEEeccccccCCCCCCCcchhhccchh
Confidence            7643211      2211      111234555566455555444    5788888885331  2          112 23


Q ss_pred             EeecCCcceEEEEEEe-CCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy6859         130 IKLDFTPLTVECIHYL-GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEY  208 (261)
Q Consensus       130 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  208 (261)
                      ++.+....+|..+.|- |...+  +++|++-|.|.||+-. +++.++.++ +...-|+||.-+|--..||+++-|..|+|
T Consensus       387 YKGHrN~~TVKgVNFfGPrsEy--VvSGSDCGhIFiW~K~-t~eii~~Me-gDr~VVNCLEpHP~~PvLAsSGid~DVKI  462 (559)
T KOG1334|consen  387 YKGHRNSRTVKGVNFFGPRSEY--VVSGSDCGHIFIWDKK-TGEIIRFME-GDRHVVNCLEPHPHLPVLASSGIDHDVKI  462 (559)
T ss_pred             hcccccccccceeeeccCccce--EEecCccceEEEEecc-hhHHHHHhh-cccceEeccCCCCCCchhhccCCccceee
Confidence            6677667788888886 45554  8999999999999998 999999998 66668999999999999999999999999


Q ss_pred             eeccc
Q psy6859         209 WSGYK  213 (261)
Q Consensus       209 wd~~~  213 (261)
                      |-..+
T Consensus       463 WTP~~  467 (559)
T KOG1334|consen  463 WTPLT  467 (559)
T ss_pred             ecCCc
Confidence            98744

>KOG1409|consensus

Probab=99.43  E-value=6e-11  Score=86.05  Aligned_cols=202  Identities=12%  Similarity=0.157  Sum_probs=148.3

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccC--CceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ..+++++.+.+ ...|+.|-..|++.-+.+..  ......+.+..|...|..+-|+...+.+++.+.|..+.---.+.+.
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            35788999988 77899999999999887654  2235566777899999999999888899999999887655555555


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+..+.......       .....+...+.|...+.|.+..+....+-.......+...+.++.|.+....  +.+|..|
T Consensus       148 ~lg~Y~~~~~~t-------~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~--LfSg~~d  218 (404)
T KOG1409|consen  148 RLGGYNFETPAS-------ALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRL--LFSGASD  218 (404)
T ss_pred             cccceEeeccCC-------CCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcE--EEecccc
Confidence            444333221111       1112222445567788888777665544444444556678999999988864  8999999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      ..+.+||+........++. +|...|..+..-+.-+.|.+++.||.|.+|+++..
T Consensus       219 ~~vi~wdigg~~g~~~el~-gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  219 HSVIMWDIGGRKGTAYELQ-GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             CceEEEeccCCcceeeeec-cchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            9999999973333344554 89999999999888889999999999999998754

>KOG2041|consensus

Probab=99.41  E-value=3.3e-11  Score=95.53  Aligned_cols=231  Identities=17%  Similarity=0.110  Sum_probs=158.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||+..|.-+.|+. .+.|-+...+|.|.+|-+-.+.+-....-....+.|.+++|+.||+.++..-.||.|.+=.+. |.
T Consensus        69 GH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GN  147 (1189)
T KOG2041|consen   69 GHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GN  147 (1189)
T ss_pred             cCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cc
Confidence            8999999999998 788999999999999998776332222223355778999999999999999999999887764 33


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-------eeeEEee--cCCcceEEEEEEe-----
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-------MINMIKL--DFTPLTVECIHYL-----  145 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-------~~~~~~~--~~~~~~~~~~~~~-----  145 (261)
                      .+.--.+.......+.++++...++..    -.+|.+++||.+..-       +......  ...+..+..+.|.     
T Consensus       148 RIwgKeLkg~~l~hv~ws~D~~~~Lf~----~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~  223 (1189)
T KOG2041|consen  148 RIWGKELKGQLLAHVLWSEDLEQALFK----KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ  223 (1189)
T ss_pred             eecchhcchheccceeecccHHHHHhh----hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence            333222333334455666666655554    578999999977531       1111111  1123345555553     


Q ss_pred             ---CCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC---------eEEEeeccc
Q psy6859         146 ---GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG---------ILEYWSGYK  213 (261)
Q Consensus       146 ---~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------~i~iwd~~~  213 (261)
                         |+...  ++.+-.+|.+.+..-.+...|+- +  ...-.+..+.|+++|..||.++.+.         .|.+|.   
T Consensus       224 ~v~pdrP~--lavcy~nGr~QiMR~eND~~Pvv-~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys---  295 (1189)
T KOG2041|consen  224 PVPPDRPR--LAVCYANGRMQIMRSENDPEPVV-V--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS---  295 (1189)
T ss_pred             cCCCCCCE--EEEEEcCceehhhhhcCCCCCeE-E--ecccEeecceecCCCcEEEEccCcccccCccccceEEEec---
Confidence               35543  66777789988877653334433 3  2336688999999999999988653         344443   


Q ss_pred             ccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEe
Q psy6859         214 QEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  257 (261)
                                   .-++.+.+++.....|++++|-..|-.+|.+
T Consensus       296 -------------p~G~i~gtlkvpg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  296 -------------PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             -------------cchhheEEEecCCceeeeeEEcCCceEEEEE
Confidence                         3477788888888999999998888776654

>KOG0974|consensus

Probab=99.41  E-value=2.1e-11  Score=99.80  Aligned_cols=187  Identities=11%  Similarity=0.090  Sum_probs=140.6

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeecccc----ceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCc
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLG----VIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFT   89 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~   89 (261)
                      +..++.+..++.+.+|+....  .....+.....    ...-+.++++.-++++|+--+.|.+|+....+.-..+..+..
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~--~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG  176 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNS--SVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG  176 (967)
T ss_pred             cceEEEEEcCceEEEEecccC--ceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence            457888889999999998875  44444432211    112233456666899999999999999873322223555655


Q ss_pred             ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC
Q psy6859          90 PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG  169 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  169 (261)
                      .+-...++.++.+++++    +.|+.+++|++.+.+.... ..-.++.++..+.+.|..    +++++.|.+.++|+.. 
T Consensus       177 ~iF~i~~s~dg~~i~s~----SdDRsiRlW~i~s~~~~~~-~~fgHsaRvw~~~~~~n~----i~t~gedctcrvW~~~-  246 (967)
T KOG0974|consen  177 SIFSIVTSLDGRYIASV----SDDRSIRLWPIDSREVLGC-TGFGHSARVWACCFLPNR----IITVGEDCTCRVWGVN-  246 (967)
T ss_pred             ceEEEEEccCCcEEEEE----ecCcceeeeecccccccCc-ccccccceeEEEEeccce----eEEeccceEEEEEecc-
Confidence            56666667799999888    9999999999999876662 223467789999999983    9999999999999774 


Q ss_pred             CCccceeeccCc-ccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         170 NGTPLHVLDRLH-TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       170 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                       +..+..++ .| ...|..++..++...+++++.|+.+++||+...
T Consensus       247 -~~~l~~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  247 -GTQLEVYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             -cceehhhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence             55666776 55 457899999999889999999999999998654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.40  E-value=9.1e-10  Score=80.66  Aligned_cols=222  Identities=14%  Similarity=0.128  Sum_probs=139.4

Q ss_pred             CCeEEEEeccCCc-eeeeEEeeccccceeEEEEeeCCCEEEEEeCC---CcEEEEEccc--cc--eeeeeeccCcceeEE
Q psy6859          23 DGHIKFWKKQEEG-IEFVKHFRSHLGVIHSICTNYNGTLLCTVASD---KAMKVFDVIN--FD--MINMIKLDFTPLTVE   94 (261)
Q Consensus        23 d~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~v~~wd~~~--~~--~~~~~~~~~~~~~~~   94 (261)
                      +.-|.+|++++.. ......+-.+.+.++-|+|+|+++.|.++..+   |.|.-|.+..  |+  .+........+.+-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            5789999998521 11122233456778999999999999988654   6788877764  43  333334455555778


Q ss_pred             EEeecCCceeeeeeecCCCCeEEEEEcCC-CceeeEEeecCCcc----------eEEEEEEeCCCCceEEEEecCCCeEE
Q psy6859          95 CIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMIKLDFTPL----------TVECIHYLGDAIPTAAVSDQDSSHVH  163 (261)
Q Consensus        95 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~d~~i~  163 (261)
                      ++..+++.++++.+   ..+.|.++-++. +.+........+..          .+....+.|++.++ ++..-..-+|.
T Consensus        95 svd~~g~~vf~AnY---~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l-~v~DLG~Dri~  170 (346)
T COG2706          95 SVDEDGRFVFVANY---HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYL-VVPDLGTDRIF  170 (346)
T ss_pred             EECCCCCEEEEEEc---cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEE-EEeecCCceEE
Confidence            88888888877633   458999999875 43322222111111          26788899999864 33333345799


Q ss_pred             EEEccCCCccceeec--cCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCCeeeeeecccccceeecCC---
Q psy6859         164 IYDCKGNGTPLHVLD--RLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK---  237 (261)
Q Consensus       164 i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---  237 (261)
                      +|++. .+++...-+  .......+.|.|+|++++.+... .+++|.+|......-++        +.-+.+..+..   
T Consensus       171 ~y~~~-dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~--------~~lQ~i~tlP~dF~  241 (346)
T COG2706         171 LYDLD-DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF--------EELQTIDTLPEDFT  241 (346)
T ss_pred             EEEcc-cCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE--------EEeeeeccCccccC
Confidence            99998 665432221  13455678999999999886554 78999999986521110        00111111111   


Q ss_pred             CccceeeeeECCCCceEEEe
Q psy6859         238 NKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~  257 (261)
                      -..+...+..+|||++|.++
T Consensus       242 g~~~~aaIhis~dGrFLYas  261 (346)
T COG2706         242 GTNWAAAIHISPDGRFLYAS  261 (346)
T ss_pred             CCCceeEEEECCCCCEEEEe
Confidence            23455678888999888765

>KOG4190|consensus

Probab=99.39  E-value=7.9e-13  Score=101.73  Aligned_cols=170  Identities=12%  Similarity=0.048  Sum_probs=125.9

Q ss_pred             eEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-------ceeeeeeccCcceeEEEEeecCCceeeeeeecC
Q psy6859          39 VKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-------DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  111 (261)
Q Consensus        39 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  111 (261)
                      +..+.+|+..|..++--.+.+-+++++.|++|++|.++..       .+..+++.+..++....+-.+.+.++      +
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~------S  801 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA------S  801 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee------e
Confidence            4567889999999988778888999999999999998732       24445566667777666666655554      4


Q ss_pred             CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC-CCceEEEEecCCCeEEEEEccCCCccceeec----cCcccCeE
Q psy6859         112 DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD-AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD----RLHTKPVV  186 (261)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~v~  186 (261)
                      .|+.|++||.--++++..+...........+...++ ....+++.++...+++++|.+ ...-..+++    .+.+..+.
T Consensus       802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR-sce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR-SCEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc-cccceeeEEeccCCCCchhee
Confidence            599999999988877775554434444444444454 233334555788999999999 766555544    24557789


Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEeeccccc
Q psy6859         187 LIKFNPIYQVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       187 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  215 (261)
                      +++..|.|++++.+-.+|+|.+.|.++++
T Consensus       881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             EEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence            99999999999999999999999998764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.37  E-value=5.6e-09  Score=79.05  Aligned_cols=210  Identities=9%  Similarity=0.054  Sum_probs=136.5

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC----------CCcEEEEEccccceeeeeeccCcce--
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS----------DKAMKVFDVINFDMINMIKLDFTPL--   91 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----------dg~v~~wd~~~~~~~~~~~~~~~~~--   91 (261)
                      ++|.+.|.++.  +.+..+..-..+ ..+ ++||++.++.+..          +..|.+||..+.+.+.++..+..|.  
T Consensus        27 ~~v~ViD~~~~--~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAG--RVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCCC--EEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence            89999999887  777777644333 334 9999998887765          6799999999999999888654422  


Q ss_pred             -----eEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCc----------------c-------------
Q psy6859          92 -----TVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTP----------------L-------------  137 (261)
Q Consensus        92 -----~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~----------------~-------------  137 (261)
                           ....++++++.++..-+  +.+..|.+.|+.+++.+..+......                .             
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~--~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~  180 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQF--SPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP  180 (352)
T ss_pred             ccCccceEEECCCCCEEEEecC--CCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence                 36778889988776522  23789999999988877665321100                0             


Q ss_pred             eEEEE--------------EEeC-CCCceEEEEecCCCeEEEEEccC----CCccceeecc------CcccCeEEEEEcC
Q psy6859         138 TVECI--------------HYLG-DAIPTAAVSDQDSSHVHIYDCKG----NGTPLHVLDR------LHTKPVVLIKFNP  192 (261)
Q Consensus       138 ~~~~~--------------~~~~-~~~~~~~~~~~~d~~i~i~d~~~----~~~~~~~~~~------~~~~~v~~~~~~~  192 (261)
                      .....              .|.+ ++.+ ++++  .+|+|++.|+..    ..+++..+..      -....+.-++++|
T Consensus       181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~~-~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~  257 (352)
T TIGR02658       181 KIKPTEVFHPEDEYLINHPAYSNKSGRL-VWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR  257 (352)
T ss_pred             EEeeeeeecCCccccccCCceEcCCCcE-EEEe--cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence            01111              1122 4442 2333  249999999641    1222322210      0223344599999


Q ss_pred             CCCEEEEEc----------CCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCc-eEEEee
Q psy6859         193 IYQVVVSVD----------KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGN-KFVTIS  258 (261)
Q Consensus       193 ~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~  258 (261)
                      +++.++...          ..+.|.++|..               +.+.+..+.. ...+..++++||++ +|++..
T Consensus       258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~---------------t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       258 ARDRIYLLADQRAKWTHKTASRFLFVVDAK---------------TGKRLRKIEL-GHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             CCCEEEEEecCCccccccCCCCEEEEEECC---------------CCeEEEEEeC-CCceeeEEECCCCCeEEEEeC
Confidence            999877642          12478888884               4666666553 45789999999999 777554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.37  E-value=2.8e-10  Score=86.72  Aligned_cols=226  Identities=12%  Similarity=0.105  Sum_probs=148.8

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC--------------
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK--------------   68 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--------------   68 (261)
                      -++..+.+|| |.+|++... ..|.+|......  .+..+. | ..|..+.|+|+++||.+=+...              
T Consensus        33 ~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~--~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEHA-AGVECWGGPSKA--KLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cchhheeecCcchheehhhc-cceEEccccchh--heeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            3677889999 888887665 567899877653  344444 3 5689999999999999865443              


Q ss_pred             -cEEEEEccccceeeeeeccCcc--ee-EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEE
Q psy6859          69 -AMKVFDVINFDMINMIKLDFTP--LT-VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHY  144 (261)
Q Consensus        69 -~v~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  144 (261)
                       .+.+||+.++..+..+.....+  .. ...++.+..+.+-+     -...++++++ +......-.....+..+..+.+
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-----v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsi  181 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-----VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSI  181 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-----ccCeEEEEec-CCccccCchhhccccceeeEEe
Confidence             4899999999999988866655  33 55666666655544     3567889997 3322111011112456788888


Q ss_pred             eCCCCceEEE-----EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc-----------CCCeEEE
Q psy6859         145 LGDAIPTAAV-----SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD-----------KAGILEY  208 (261)
Q Consensus       145 ~~~~~~~~~~-----~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i~i  208 (261)
                      +|.+....++     .....+.+++|.+. .+..+.+-. --+..=..+.|.+.|++|..--           ....+.|
T Consensus       182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp-~~s~l~tk~-lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl  259 (561)
T COG5354         182 SPEGNHDELAYWTPEKLNKPAMVRILSIP-KNSVLVTKN-LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL  259 (561)
T ss_pred             cCCCCCceEEEEccccCCCCcEEEEEEcc-CCCeeeeee-eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence            8874432222     14567889999997 555554433 2333346689999998764311           1234667


Q ss_pred             eecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         209 WSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      +++.                ++.+.....-.++|...+|+|.++.+++.+
T Consensus       260 ~~~~----------------e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         260 LRIT----------------ERSIPVEKDLKDPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             Eeec----------------ccccceeccccccceeeeecccCCceeEEe
Confidence            7664                223333335578999999999998887765

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1e-09  Score=86.70  Aligned_cols=220  Identities=10%  Similarity=-0.023  Sum_probs=124.3

Q ss_pred             CeEEEEEcC-CCe--E-EEecCCC--eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CC----cEEEE
Q psy6859           5 PITHVVVTK-TDF--V-ITASNDG--HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DK----AMKVF   73 (261)
Q Consensus         5 ~v~~~~~~~-~~~--l-~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg----~v~~w   73 (261)
                      .+..-+|+| ++.  + ++...+|  .|.+.++.++..+.+..+.   +.....+|+|||+.|+..+. +|    .+.+|
T Consensus       186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~---g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~  262 (428)
T PRK01029        186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ---GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF  262 (428)
T ss_pred             CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC---CCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence            445668999 653  2 2444443  5777777766434444443   34456899999998886553 23    34446


Q ss_pred             Ecccc---ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCe--EEEEEcCC-CceeeEEeecCCcceEEEEEEeCC
Q psy6859          74 DVINF---DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSR--VHIYDCKG-NDMINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        74 d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~--i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                      ++..+   +................++++++.++..   ...++.  |.++++.. +.....+..  ....+....|+|+
T Consensus       263 ~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~---s~~~g~~~ly~~~~~~~g~~~~~lt~--~~~~~~~p~wSPD  337 (428)
T PRK01029        263 SLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFV---SNKDGRPRIYIMQIDPEGQSPRLLTK--KYRNSSCPAWSPD  337 (428)
T ss_pred             ecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEE---ECCCCCceEEEEECcccccceEEecc--CCCCccceeECCC
Confidence            76543   2222222111222345788999877654   234554  44445542 222333322  2224567889999


Q ss_pred             CCceEEEEec-CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE-cC--CCeEEEeecccccccCCeeee
Q psy6859         148 AIPTAAVSDQ-DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV-DK--AGILEYWSGYKQEFKFPKCVH  223 (261)
Q Consensus       148 ~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~  223 (261)
                      +..+++.+.. ....|.+||+. +++. ..+. .....+....|+|||+.|+.. ..  ...|.++|+..          
T Consensus       338 G~~Laf~~~~~g~~~I~v~dl~-~g~~-~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~----------  404 (428)
T PRK01029        338 GKKIAFCSVIKGVRQICVYDLA-TGRD-YQLT-TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT----------  404 (428)
T ss_pred             CCEEEEEEcCCCCcEEEEEECC-CCCe-EEcc-CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC----------
Confidence            9874333321 12469999997 6654 3443 333456788999999977643 32  34677788753          


Q ss_pred             eecccccceeecCCCccceeeeeECCCC
Q psy6859         224 FESKLDTDLFEFAKNKTYPSGLSFSPDG  251 (261)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~  251 (261)
                           ++ ...+....+.+...+|+|-.
T Consensus       405 -----g~-~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        405 -----KK-TRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             -----CC-EEEeecCCCcccCceecCCC
Confidence                 22 22232334556778898854

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.35  E-value=5.3e-09  Score=79.16  Aligned_cols=193  Identities=14%  Similarity=0.128  Sum_probs=126.5

Q ss_pred             EcC-CCeEEEe-c---------CCCeEEEEeccCCceeeeEEeecccc-------ceeEEEEeeCCCEEEEEe-C-CCcE
Q psy6859          11 VTK-TDFVITA-S---------NDGHIKFWKKQEEGIEFVKHFRSHLG-------VIHSICTNYNGTLLCTVA-S-DKAM   70 (261)
Q Consensus        11 ~~~-~~~l~s~-~---------~d~~i~iw~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~s~~-~-dg~v   70 (261)
                      ++| ++.|+.+ +         .+..|.+||..+.  +.+..+.-...       ....++++|||++++... . +..|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V  130 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV  130 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence            788 6655554 4         5789999999987  66666653211       234788999999998776 3 6899


Q ss_pred             EEEEccccceeeeeeccCccee-------------------------------E-EEE-------------ee-cCCcee
Q psy6859          71 KVFDVINFDMINMIKLDFTPLT-------------------------------V-ECI-------------HY-LGDAIP  104 (261)
Q Consensus        71 ~~wd~~~~~~~~~~~~~~~~~~-------------------------------~-~~~-------------~~-~~~~~~  104 (261)
                      .+.|+.+++.+.++..+.....                               . ..+             .+ ++..++
T Consensus       131 ~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~  210 (352)
T TIGR02658       131 GVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW  210 (352)
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence            9999999888776643221000                               0 000             01 222222


Q ss_pred             eeeeecCCCCeEEEEEcCCCc-----eeeEEeec-----CCcceEEEEEEeCCCCceEEEEecC--------CCeEEEEE
Q psy6859         105 TAAVSDQDSSRVHIYDCKGND-----MINMIKLD-----FTPLTVECIHYLGDAIPTAAVSDQD--------SSHVHIYD  166 (261)
Q Consensus       105 ~~~~s~~~d~~i~i~d~~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--------d~~i~i~d  166 (261)
                       +    +..|.|.+.|+....     ....+...     -.|....-+++++++..++++.-..        .+.|.++|
T Consensus       211 -v----s~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD  285 (352)
T TIGR02658       211 -P----TYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD  285 (352)
T ss_pred             -E----ecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence             1    345888888864432     22222111     1334445599999998754433221        26899999


Q ss_pred             ccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEc-CCCeEEEeeccc
Q psy6859         167 CKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVD-KAGILEYWSGYK  213 (261)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~  213 (261)
                      .. +.+.+..+.  -...+..++++||++ +|++.. .++.|.++|..+
T Consensus       286 ~~-t~kvi~~i~--vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       286 AK-TGKRLRKIE--LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             CC-CCeEEEEEe--CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            98 999999885  466899999999999 887666 678899999854

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=3.9e-09  Score=82.89  Aligned_cols=206  Identities=13%  Similarity=0.061  Sum_probs=120.2

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCE-EEEEeC---CCcEEEEEccccceeeeeeccCcceeEEEEeec
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL-LCTVAS---DKAMKVFDVINFDMINMIKLDFTPLTVECIHYL   99 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~---dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~   99 (261)
                      ..|.+-|.+..  ....... . +......|+|||+. ++..+.   +..|.++|+.+++........ .......++++
T Consensus       169 ~~l~~~d~dg~--~~~~~~~-~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-g~~~~~~~SPD  243 (419)
T PRK04043        169 SNIVLADYTLT--YQKVIVK-G-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-GMLVVSDVSKD  243 (419)
T ss_pred             ceEEEECCCCC--ceeEEcc-C-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-CcEEeeEECCC
Confidence            34555455443  2222223 2 36778999999985 554443   346889999887655543322 22334568899


Q ss_pred             CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC-CeEEEEEccCCCccceeec
Q psy6859         100 GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       100 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~~  178 (261)
                      ++.++... +...+..|.++|+.+++... +..  .+.......|+||+..+++.+...+ ..|+++|+. +++..+...
T Consensus       244 G~~la~~~-~~~g~~~Iy~~dl~~g~~~~-LT~--~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~~rlt~  318 (419)
T PRK04043        244 GSKLLLTM-APKGQPDIYLYDTNTKTLTQ-ITN--YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSVEQVVF  318 (419)
T ss_pred             CCEEEEEE-ccCCCcEEEEEECCCCcEEE-ccc--CCCccCccEECCCCCEEEEEECCCCCceEEEEECC-CCCeEeCcc
Confidence            98776552 22446788899998876433 322  1212234579999987655543222 257777876 554433221


Q ss_pred             cCcccCeEEEEEcCCCCEEEEEcCC---------CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECC
Q psy6859         179 RLHTKPVVLIKFNPIYQVVVSVDKA---------GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP  249 (261)
Q Consensus       179 ~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  249 (261)
                        ....  ...|+|+|++|+.....         ..|.+.|+.+               +. .+.+... .......|+|
T Consensus       319 --~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~---------------g~-~~~LT~~-~~~~~p~~SP  377 (419)
T PRK04043        319 --HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS---------------DY-IRRLTAN-GVNQFPRFSS  377 (419)
T ss_pred             --CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC---------------CC-eEECCCC-CCcCCeEECC
Confidence              1111  24899999988665533         2566777643               22 2233322 2233588999


Q ss_pred             CCceEEEeecC
Q psy6859         250 DGNKFVTISMD  260 (261)
Q Consensus       250 ~~~~l~s~~~D  260 (261)
                      ||+.|+..+.+
T Consensus       378 DG~~I~f~~~~  388 (419)
T PRK04043        378 DGGSIMFIKYL  388 (419)
T ss_pred             CCCEEEEEEcc
Confidence            99988876654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.31  E-value=3.2e-09  Score=80.70  Aligned_cols=124  Identities=17%  Similarity=0.186  Sum_probs=96.3

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCC-eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDG-HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ||...|.-..+.- ++-++.|..|| .+-|++.++.   ....+...-+.|.++..+++|++++.+.....+.+.|+.++
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng  433 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG  433 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence            5777777777776 66788899999 8999999885   34445556688999999999999999988889999999998


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCcee
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI  127 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~  127 (261)
                      .....-+....-+....+++++++++...-.|---..|+++|+.+++..
T Consensus       434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            7665544445556677788888888776445555678999999876543

>KOG4532|consensus

Probab=99.26  E-value=1.8e-09  Score=76.15  Aligned_cols=208  Identities=12%  Similarity=0.006  Sum_probs=127.1

Q ss_pred             ecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-----CCCEEEEEeCCCcEEEEEccccceeeee-eccCcceeE
Q psy6859          20 ASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-----NGTLLCTVASDKAMKVFDVINFDMINMI-KLDFTPLTV   93 (261)
Q Consensus        20 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~v~~wd~~~~~~~~~~-~~~~~~~~~   93 (261)
                      -+....+.+|+........+..+       ..+.|.|     ..-+|+.|+..|...+|...+.+....+ ..+...+.+
T Consensus        48 i~~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~  120 (344)
T KOG4532|consen   48 ISKTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL  120 (344)
T ss_pred             ccceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhh
Confidence            34455677777766431222222       3344444     3348999999999999999866543322 222221221


Q ss_pred             EEEeec-CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc
Q psy6859          94 ECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT  172 (261)
Q Consensus        94 ~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  172 (261)
                      ..-..+ ...+..+    +.|.++++.++..+.....+..  .......+++++++.+  +++.++...|..|.+...+.
T Consensus       121 ~~r~cd~~~~~~i~----sndht~k~~~~~~~s~~~~~h~--~~~~~ns~~~snd~~~--~~~Vgds~~Vf~y~id~~se  192 (344)
T KOG4532|consen  121 VKRYCDLKFPLNIA----SNDHTGKTMVVSGDSNKFAVHN--QNLTQNSLHYSNDPSW--GSSVGDSRRVFRYAIDDESE  192 (344)
T ss_pred             hhhhcccccceeec----cCCcceeEEEEecCcccceeec--cccceeeeEEcCCCce--EEEecCCCcceEEEeCCccc
Confidence            111111 1122223    7899999988876643333322  2235788999999986  67777788999999985554


Q ss_pred             cceee-ccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCC
Q psy6859         173 PLHVL-DRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDG  251 (261)
Q Consensus       173 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  251 (261)
                      .+..+ ....+..--+..|+.....+|++..||.+.|||++....          .....-.+-..|.+.++.+.|+|-|
T Consensus       193 y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t----------pm~~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  193 YIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT----------PMAEISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             eeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc----------chhhhcccCCCCCCceEEEEecCCC
Confidence            44332 213334446778999999999999999999999975311          0011111223488999999999865


Q ss_pred             c
Q psy6859         252 N  252 (261)
Q Consensus       252 ~  252 (261)
                      .
T Consensus       263 ~  263 (344)
T KOG4532|consen  263 L  263 (344)
T ss_pred             c
Confidence            3

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.25  E-value=1.1e-08  Score=78.31  Aligned_cols=201  Identities=9%  Similarity=0.046  Sum_probs=128.7

Q ss_pred             CCeEEEEEcC-CCeEEEecCCC---------------eEEEEeccCCceeeeEEeeccccc--ee-EEEEeeCCCEEEEE
Q psy6859           4 SPITHVVVTK-TDFVITASNDG---------------HIKFWKKQEEGIEFVKHFRSHLGV--IH-SICTNYNGTLLCTV   64 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~---------------~i~iw~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~s~   64 (261)
                      ..|..+.|+| +.+|.+-+..+               .+.+||..++  ..+..+..-..+  .. -+.|+-+.++++-.
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg--~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv  149 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG--MIVFSFNGISQPYLGWPVLKFSIDDKYVARV  149 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc--eeEeeccccCCcccccceeeeeecchhhhhh
Confidence            3577889999 89999876544               4899999988  777777765555  44 67888888777655


Q ss_pred             eCCCcEEEEEccccceee-ee-eccCcceeEEEEeecCCceeeeeee---cCCCCeEEEEEcCCCceeeEEeecCCcceE
Q psy6859          65 ASDKAMKVFDVINFDMIN-MI-KLDFTPLTVECIHYLGDAIPTAAVS---DQDSSRVHIYDCKGNDMINMIKLDFTPLTV  139 (261)
Q Consensus        65 ~~dg~v~~wd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~s---~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  139 (261)
                      . ...+.++++ +..... .+ .+....+.-..++|.++.-..+.++   .....++++|.+..+..+....+.  ...-
T Consensus       150 v-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf--k~~~  225 (561)
T COG5354         150 V-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF--KVSG  225 (561)
T ss_pred             c-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE--eecc
Confidence            3 346899997 332211 11 1112223344455543222212222   356789999999877666554432  1123


Q ss_pred             EEEEEeCCCCceEEEEecC---------CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEE--EcCCCeEEE
Q psy6859         140 ECIHYLGDAIPTAAVSDQD---------SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVS--VDKAGILEY  208 (261)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i  208 (261)
                      ..+.|++.+.++++.+-..         +..++|++++  +.-+.... ...++|...+|.|.++.+++  |-.+..+.+
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~--e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~  302 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT--ERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSV  302 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeec--ccccceec-cccccceeeeecccCCceeEEecccccceee
Confidence            5677888888765543221         3668899886  33333332 46799999999999986644  447888999


Q ss_pred             eeccc
Q psy6859         209 WSGYK  213 (261)
Q Consensus       209 wd~~~  213 (261)
                      +|++.
T Consensus       303 ~~lr~  307 (561)
T COG5354         303 FDLRG  307 (561)
T ss_pred             ccccc
Confidence            99864

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.23  E-value=2.3e-07  Score=68.15  Aligned_cols=222  Identities=14%  Similarity=0.056  Sum_probs=136.0

Q ss_pred             EEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEe-eCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859           8 HVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTN-YNGTLLCTVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         8 ~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      ++.|.+  +.++++--..+.|..|+..+.  ... .+... . ...+++. +++ .++.+... .+.++|..+++.....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~--~~~-~~~~~-~-~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG--EVE-VIDLP-G-PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT--EEE-EEESS-S-EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC--eEE-EEecC-C-CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEe
Confidence            567887  556777777899999998875  222 22212 2 6777887 565 55555554 4556698887654444


Q ss_pred             ec-----cCcceeEEEEeecCCceeeeeeecCC--C--CeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          85 KL-----DFTPLTVECIHYLGDAIPTAAVSDQD--S--SRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        85 ~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      ..     .........+.++|+..++-......  .  +.|..++.. ++.......   -.....++|+|++.. ++++
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~---~~~pNGi~~s~dg~~-lyv~  151 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG---LGFPNGIAFSPDGKT-LYVA  151 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE---ESSEEEEEEETTSSE-EEEE
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC---cccccceEECCcchh-eeec
Confidence            43     22334456666777643332111011  1  567777877 443333332   224578999999985 4667


Q ss_pred             ecCCCeEEEEEccCCCc------cceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccc
Q psy6859         156 DQDSSHVHIYDCKGNGT------PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLD  229 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  229 (261)
                      -+..+.|..|++...+.      .+..+. ......-.+++.++|++.++....+.|.+++.+                +
T Consensus       152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~----------------G  214 (246)
T PF08450_consen  152 DSFNGRIWRFDLDADGGELSNRRVFIDFP-GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD----------------G  214 (246)
T ss_dssp             ETTTTEEEEEEEETTTCCEEEEEEEEE-S-SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT----------------S
T ss_pred             ccccceeEEEeccccccceeeeeeEEEcC-CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC----------------c
Confidence            78889999999963332      111222 222347889999999977777778899999964                5


Q ss_pred             cceeecCCCccceeeeeE-CCCCceEEEee
Q psy6859         230 TDLFEFAKNKTYPSGLSF-SPDGNKFVTIS  258 (261)
Q Consensus       230 ~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~  258 (261)
                      +.+..+......+++++| -|+.+.|...+
T Consensus       215 ~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  215 KLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             CEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             cEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            666666555558899999 46766555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1064|consensus

Probab=99.22  E-value=1.6e-10  Score=99.99  Aligned_cols=180  Identities=8%  Similarity=0.119  Sum_probs=126.9

Q ss_pred             EEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccC-cceeEEE
Q psy6859          17 VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDF-TPLTVEC   95 (261)
Q Consensus        17 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-~~~~~~~   95 (261)
                      +.....++...-|..+..+    ..++.+-..|.++.-+|...+.+||+.||.+++|....++.+..+.... ..+....
T Consensus      2183 ~~~~n~~~~~~tq~~~~~~----~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGAS----VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred             CCcccCCccccceecccce----eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence            3333444455555544332    1223344567788778888899999999999999999888877766332 3455556


Q ss_pred             EeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe---cCCCeEEEEEccCCC-
Q psy6859          96 IHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD---QDSSHVHIYDCKGNG-  171 (261)
Q Consensus        96 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~i~d~~~~~-  171 (261)
                      +...|+.+..+    ..||.+.+|...   +...+....+......+.|-...    ++++   ++++.+.+||..... 
T Consensus      2259 f~~qGnk~~i~----d~dg~l~l~q~~---pk~~~s~qchnk~~~Df~Fi~s~----~~tag~s~d~~n~~lwDtl~~~~ 2327 (2439)
T KOG1064|consen 2259 FNHQGNKFGIV----DGDGDLSLWQAS---PKPYTSWQCHNKALSDFRFIGSL----LATAGRSSDNRNVCLWDTLLPPM 2327 (2439)
T ss_pred             hcccCCceeee----ccCCceeecccC---CcceeccccCCccccceeeeehh----hhccccCCCCCcccchhcccCcc
Confidence            67778777776    889999999987   22233333455566777777633    3433   457889999976222 


Q ss_pred             -ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         172 -TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       172 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                       ..+.  . .|.+.++++++.|..++|++|+.+|.|++||++..
T Consensus      2328 ~s~v~--~-~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2328 NSLVH--T-CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred             cceee--e-ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence             2233  3 89999999999999999999999999999999753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.21  E-value=1.3e-07  Score=82.57  Aligned_cols=236  Identities=14%  Similarity=0.144  Sum_probs=140.4

Q ss_pred             EEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeec--c------------ccceeEEEEeeCCCEEEEEeC-CCcE
Q psy6859           8 HVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRS--H------------LGVIHSICTNYNGTLLCTVAS-DKAM   70 (261)
Q Consensus         8 ~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~--~------------~~~v~~~~~~~~~~~l~s~~~-dg~v   70 (261)
                      .+++++  +.++++-+.++.|+++|....   .+..+.+  .            -.....++++++++.|+.+.. .+.|
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            577776  457777788899999998653   2222221  1            123578999998876666554 5679


Q ss_pred             EEEEccccceeeeeecc------------------CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee
Q psy6859          71 KVFDVINFDMINMIKLD------------------FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL  132 (261)
Q Consensus        71 ~~wd~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~  132 (261)
                      +.+|+.++. +.++...                  ..| ..+.+.+.+..++..   .+.++.|++||..++... .+..
T Consensus       649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P-~gVa~dp~~g~LyVa---d~~~~~I~v~d~~~g~v~-~~~G  722 (1057)
T PLN02919        649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSP-WDVCFEPVNEKVYIA---MAGQHQIWEYNISDGVTR-VFSG  722 (1057)
T ss_pred             EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCC-eEEEEecCCCeEEEE---ECCCCeEEEEECCCCeEE-EEec
Confidence            999986654 3322110                  112 245666644433322   267889999998876432 2211


Q ss_pred             cC-------------CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccce-------------eecc-------
Q psy6859         133 DF-------------TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLH-------------VLDR-------  179 (261)
Q Consensus       133 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-------------~~~~-------  179 (261)
                      ..             .-.....++++|++.. ++++...++.|++||+. ++....             .+-.       
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~-LYVADs~n~~Irv~D~~-tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~  800 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKE-LYIADSESSSIRALDLK-TGGSRLLAGGDPTFSDNLFKFGDHDGVGSE  800 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCE-EEEEECCCCeEEEEECC-CCcEEEEEecccccCcccccccCCCCchhh
Confidence            10             0113457899999875 46677778999999987 443211             0100       


Q ss_pred             CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce----eecCCCccceeeeeECCCCceEE
Q psy6859         180 LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL----FEFAKNKTYPSGLSFSPDGNKFV  255 (261)
Q Consensus       180 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~  255 (261)
                      ..-.....++++++|+++++-..++.|++||..++....-   .   .++..-    ....+.-.....++++++|++++
T Consensus       801 ~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti---a---G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV  874 (1057)
T PLN02919        801 VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL---A---GTGKAGFKDGKALKAQLSEPAGLALGENGRLFV  874 (1057)
T ss_pred             hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE---e---ccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence            0011346889999999888888999999999865321100   0   000000    00122234678899999999777


Q ss_pred             EeecC
Q psy6859         256 TISMD  260 (261)
Q Consensus       256 s~~~D  260 (261)
                      +-+.+
T Consensus       875 aDt~N  879 (1057)
T PLN02919        875 ADTNN  879 (1057)
T ss_pred             EECCC
Confidence            65544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.19  E-value=1.2e-08  Score=87.22  Aligned_cols=230  Identities=15%  Similarity=0.126  Sum_probs=135.5

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEE----eccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFW----KKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      +.|.++.|.+ ...++.+..+|.|.+.    +..+...+.+..+.   ..|.+++||||++.|+....++++.+.+ ++.
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd---~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~f  151 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVD---SGILAASWSPDEELLALVTGEGNLLLMT-RDF  151 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEc---CcEEEEEECCCcCEEEEEeCCCEEEEEe-ccc
Confidence            5688888888 6778888999999999    65555445555444   7899999999999999999999998886 566


Q ss_pred             ceeeeeeccCcc------eeEEEEeecCCceeeeeeecCCCCeEE--EEEcCCCceeeEEeecCCcceEEEEEEeCCCCc
Q psy6859          79 DMINMIKLDFTP------LTVECIHYLGDAIPTAAVSDQDSSRVH--IYDCKGNDMINMIKLDFTPLTVECIHYLGDAIP  150 (261)
Q Consensus        79 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~s~~~d~~i~--i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (261)
                      +.+.+..+....      +.+-|= ....++     -|+..+...  +-|..-. .+..-... ....-..++|-+|+.+
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWG-kKeTQF-----~Gs~gK~aa~~~~~p~~~-~~d~~~~s-~dd~~~~ISWRGDG~y  223 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWG-KKETQF-----HGSAGKAAARQLRDPTVP-KVDEGKLS-WDDGRVRISWRGDGEY  223 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccC-cccCcc-----CcchhhhhhhhccCCCCC-ccccCccc-cCCCceEEEECCCCcE
Confidence            666665543221      111110 000111     111111000  0111000 00000011 1224468899999987


Q ss_pred             eEEEEe--cC--CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcC---CCeEEEeecccccccCCeeee
Q psy6859         151 TAAVSD--QD--SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK---AGILEYWSGYKQEFKFPKCVH  223 (261)
Q Consensus       151 ~~~~~~--~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~  223 (261)
                      ..+-+.  ..  -..+++|+-.  |.+..+-+ .-.+--..++|.|.|.+||+...   ...|.+|.-+.-         
T Consensus       224 FAVss~~~~~~~~R~iRVy~Re--G~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL---------  291 (928)
T PF04762_consen  224 FAVSSVEPETGSRRVIRVYSRE--GELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL---------  291 (928)
T ss_pred             EEEEEEEcCCCceeEEEEECCC--ceEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc---------
Confidence            433222  11  3579999964  54444433 33333456899999999988764   345666653211         


Q ss_pred             eecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         224 FESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                         +.++..-.+......|..+.|++|+..||.--.|
T Consensus       292 ---rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~  325 (928)
T PF04762_consen  292 ---RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED  325 (928)
T ss_pred             ---EeeeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence               1222222222456688999999999999986554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.19  E-value=2.9e-08  Score=75.66  Aligned_cols=208  Identities=15%  Similarity=0.196  Sum_probs=131.1

Q ss_pred             cCCCeEEEEeccCCceeeeEEe-e---ccc-----cceeEEE-Eee-CCCEEEEEeCCCcEEEEEccccceeeeeeccCc
Q psy6859          21 SNDGHIKFWKKQEEGIEFVKHF-R---SHL-----GVIHSIC-TNY-NGTLLCTVASDKAMKVFDVINFDMINMIKLDFT   89 (261)
Q Consensus        21 ~~d~~i~iw~~~~~~~~~~~~~-~---~~~-----~~v~~~~-~~~-~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~   89 (261)
                      +..|.|.++|.++...+.+..- .   ...     .+..-+. |++ +|.+++..|+ |...+.+...+-.++.-+  ..
T Consensus       284 q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~--~~  360 (668)
T COG4946         284 QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQVGK--KG  360 (668)
T ss_pred             ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEcCC--CC
Confidence            4567899999887533222111 0   000     1111122 333 6788888876 577777765554443221  12


Q ss_pred             ceeEEEEeecCCceeeeeeecCCCC-eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEcc
Q psy6859          90 PLTVECIHYLGDAIPTAAVSDQDSS-RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCK  168 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~s~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  168 (261)
                      .+.-..+..+++.++..    ..|| .+.++|.++++......   .-..|.++..++++++  ++.+.+...+-++|+.
T Consensus       361 ~VrY~r~~~~~e~~vig----t~dgD~l~iyd~~~~e~kr~e~---~lg~I~av~vs~dGK~--~vvaNdr~el~vidid  431 (668)
T COG4946         361 GVRYRRIQVDPEGDVIG----TNDGDKLGIYDKDGGEVKRIEK---DLGNIEAVKVSPDGKK--VVVANDRFELWVIDID  431 (668)
T ss_pred             ceEEEEEccCCcceEEe----ccCCceEEEEecCCceEEEeeC---CccceEEEEEcCCCcE--EEEEcCceEEEEEEec
Confidence            23333444444444433    6787 89999999986544333   3347899999999986  6677777888889998


Q ss_pred             CCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC----eEEEeecccccccCCeeeeeecccccceeecCCCccceee
Q psy6859         169 GNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG----ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSG  244 (261)
Q Consensus       169 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  244 (261)
                       ++.+. .+.....+-|+.+.|+|+++++|-+-.+|    .|+++|+..+                .+.......+.=.+
T Consensus       432 -ngnv~-~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~----------------Kiy~vTT~ta~Dfs  493 (668)
T COG4946         432 -NGNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG----------------KIYDVTTPTAYDFS  493 (668)
T ss_pred             -CCCee-EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC----------------eEEEecCCcccccC
Confidence             66543 33325678899999999999999887766    5899998642                23333323333356


Q ss_pred             eeECCCCceEEEee
Q psy6859         245 LSFSPDGNKFVTIS  258 (261)
Q Consensus       245 ~~~s~~~~~l~s~~  258 (261)
                      -+|.||+++|.--|
T Consensus       494 PaFD~d~ryLYfLs  507 (668)
T COG4946         494 PAFDPDGRYLYFLS  507 (668)
T ss_pred             cccCCCCcEEEEEe
Confidence            78899998876543

>KOG4714|consensus

Probab=99.17  E-value=8e-10  Score=77.45  Aligned_cols=204  Identities=14%  Similarity=0.150  Sum_probs=116.7

Q ss_pred             eEEEEEcCCCeEEEecCCCeEEEEeccC----------CceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859           6 ITHVVVTKTDFVITASNDGHIKFWKKQE----------EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         6 v~~~~~~~~~~l~s~~~d~~i~iw~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      |+.+.++....|+++..++.+.......          .+..+...+..|+.+-.+-+.+--++.++++..||.+.+++.
T Consensus        39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence            4555555555677776666655443221          111233333334433333333334567999999999999997


Q ss_pred             ccccee-eeeeccCcceeEEEEeecCCceeeeee-ecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859          76 INFDMI-NMIKLDFTPLTVECIHYLGDAIPTAAV-SDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        76 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
                      +.-..+ ..+...........+-..++.+.+... .-..-+..+.|+++..+.+..-..  ....+.+++-+|.... ++
T Consensus       119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~~~~v~~l~~hp~qq~-~v  195 (319)
T KOG4714|consen  119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--ALDAVTALCSHPAQQH-LV  195 (319)
T ss_pred             hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc--ccccchhhhCCccccc-EE
Confidence            652111 111110000111111122332222100 001234455666654432222222  1224777777777664 48


Q ss_pred             EEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCC-CCEEEEEcCCCeEEEeeccc
Q psy6859         154 VSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPI-YQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       154 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ++|++||.+-+||.++-..+...+. .|+.+++.+.|+|. +..|+++++||.+..||..+
T Consensus       196 ~cgt~dg~~~l~d~rn~~~p~S~l~-ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  196 CCGTDDGIVGLWDARNVAMPVSLLK-AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEecCCCeEEEEEcccccchHHHHH-HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            8999999999999995445666676 99999999999995 56899999999999999764

>KOG2315|consensus

Probab=99.16  E-value=3.3e-08  Score=76.55  Aligned_cols=197  Identities=13%  Similarity=0.140  Sum_probs=126.9

Q ss_pred             CCCCeEEEEEcCC-C--eEEE-----ecCCCeEEEEeccCCcee---eeEEeeccccceeEEEEeeCCCE-EEEEe--CC
Q psy6859           2 HRSPITHVVVTKT-D--FVIT-----ASNDGHIKFWKKQEEGIE---FVKHFRSHLGVIHSICTNYNGTL-LCTVA--SD   67 (261)
Q Consensus         2 H~~~v~~~~~~~~-~--~l~s-----~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~-l~s~~--~d   67 (261)
                      |...|+.+.+||+ .  .+|+     .+.-..++||.....+..   ..++|-  ...=..+.|++-|+- |+.++  -|
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeec
Confidence            5577889999983 3  3442     466678999988732111   111221  122245677765542 22222  22


Q ss_pred             ---------CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcce
Q psy6859          68 ---------KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLT  138 (261)
Q Consensus        68 ---------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  138 (261)
                               .++++.+++.....-.+ ....|+....+++++..+.++  -|-.-..+.|||++.. ++..+    .++.
T Consensus       242 ktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~Vv--yGfMPAkvtifnlr~~-~v~df----~egp  313 (566)
T KOG2315|consen  242 KTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVV--YGFMPAKVTIFNLRGK-PVFDF----PEGP  313 (566)
T ss_pred             CCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEE--EecccceEEEEcCCCC-EeEeC----CCCC
Confidence                     36788887622222222 346789999999998877654  3456778999998765 33333    2334


Q ss_pred             EEEEEEeCCCCceEEEE-ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc------CCCeEEEeec
Q psy6859         139 VECIHYLGDAIPTAAVS-DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD------KAGILEYWSG  211 (261)
Q Consensus       139 ~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~  211 (261)
                      -.++-|+|.+...+++. |.-.|.|-+||.. +.+++..++ ...  -+-..|+|||++++++.      -|+.++||+.
T Consensus       314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~-n~K~i~~~~-a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVP-NRKLIAKFK-AAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             ccceEECCCCCEEEEeecCCCCCceEEEecc-chhhccccc-cCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            57899999998643332 2336889999999 788888886 433  35579999999997776      3677999997


Q ss_pred             c
Q psy6859         212 Y  212 (261)
Q Consensus       212 ~  212 (261)
                      .
T Consensus       390 t  390 (566)
T KOG2315|consen  390 T  390 (566)
T ss_pred             c
Confidence            4

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.15  E-value=2.4e-10  Score=58.02  Aligned_cols=38  Identities=34%  Similarity=0.581  Sum_probs=36.4

Q ss_pred             eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859          37 EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus        37 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      +++.++++|.++|++++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            67889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309|consensus

Probab=99.15  E-value=3.6e-10  Score=90.08  Aligned_cols=206  Identities=15%  Similarity=0.136  Sum_probs=129.2

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ||...|+.+.|+|  ...+++++.|-.+..||+.... .++..+..-...-..++|+-....+.+.+..+.|++||.+.|
T Consensus       112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~g  190 (1081)
T KOG0309|consen  112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKG  190 (1081)
T ss_pred             cCccceeccccCCCCCcceeeccccccceeeeccCCC-cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCC
Confidence            7999999999999  5799999999999999998753 444444444455688999864444555567778999999876


Q ss_pred             c-eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc--eeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          79 D-MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND--MINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        79 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      . ++..++.+...+..+.+   .+...+...+++.|++|+.||.....  ..+.+...   ..+..-.+.|-+....+.-
T Consensus       191 s~pl~s~K~~vs~vn~~~f---nr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~---~piw~~r~~Pfg~g~~~mp  264 (1081)
T KOG0309|consen  191 STPLCSLKGHVSSVNSIDF---NRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN---FPIWRGRYLPFGEGYCIMP  264 (1081)
T ss_pred             CcceEEecccceeeehHHH---hhhhhhhhcccCCCCceeeecccccccccceecccc---CcceeccccccCceeEecc
Confidence            4 55566643322222222   12222333445899999999987542  22222221   1333334444332211111


Q ss_pred             ecCCCeEEE---------EEccCCCccceeeccCcccCeEEEEEcCC--------CC--EEEEEcCCCeEEEeecccc
Q psy6859         156 DQDSSHVHI---------YDCKGNGTPLHVLDRLHTKPVVLIKFNPI--------YQ--VVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       156 ~~~d~~i~i---------~d~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~--~l~~~~~dg~i~iwd~~~~  214 (261)
                      .-.+..+.+         |+.....+++.+|. +|...|....|-..        .+  .|++-+.|..+++|.+.+.
T Consensus       265 ~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~-GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  265 MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV-GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             ccCCeeeeeccccchhhhhccccCCcceeeec-CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            111223333         33332347888998 99988877655432        22  6899999999999988753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.14  E-value=3.5e-08  Score=77.28  Aligned_cols=212  Identities=11%  Similarity=0.036  Sum_probs=121.7

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccce-----eEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccC
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVI-----HSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDF   88 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~   88 (261)
                      +..++.++.++.+..||.+++  +.+..+......+     ..... .+ ..++.+..++.+..+|..+|+.+.+.....
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG--~~~W~~~~~~~~~~~~~~~sp~~-~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~  220 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATG--ERLWTYSRVTPALTLRGSASPVI-AD-GGVLVGFAGGKLVALDLQTGQPLWEQRVAL  220 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCC--ceeeEEccCCCceeecCCCCCEE-EC-CEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence            345666777888888888776  4444433221111     01111 13 367778888999999999998766543211


Q ss_pred             cce-----e----EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          89 TPL-----T----VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        89 ~~~-----~----~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ...     .    .......++.++..    +.++.+..||.++++.+-......    ........+.    ++.++.+
T Consensus       221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~----~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~~~~~~----vyv~~~~  288 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVVDGGQVYAV----SYQGRVAALDLRSGRVLWKRDASS----YQGPAVDDNR----LYVTDAD  288 (377)
T ss_pred             CCCCCchhhhhccCCccEEECCEEEEE----EcCCEEEEEECCCCcEEEeeccCC----ccCceEeCCE----EEEECCC
Confidence            100     0    00001123444444    678999999999987765554211    1122222222    5566779


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      |.+..+|.. +++.+...+........+...  .+..|++++.+|.|.++|..+               ++.+..++.+.
T Consensus       289 G~l~~~d~~-tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t---------------G~~~~~~~~~~  350 (377)
T TIGR03300       289 GVVVALDRR-SGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED---------------GSFVARLKTDG  350 (377)
T ss_pred             CeEEEEECC-CCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCC---------------CCEEEEEEcCC
Confidence            999999998 887776653011112222222  356888899999999999844               56666665444


Q ss_pred             ccee-eeeECCCCceEEEeecCC
Q psy6859         240 TYPS-GLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~-~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..+. +..+. ++ .|+.++.||
T Consensus       351 ~~~~~sp~~~-~~-~l~v~~~dG  371 (377)
T TIGR03300       351 SGIASPPVVV-GD-GLLVQTRDG  371 (377)
T ss_pred             CccccCCEEE-CC-EEEEEeCCc
Confidence            3332 22232 33 466666665

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.13  E-value=4.9e-07  Score=64.76  Aligned_cols=197  Identities=11%  Similarity=0.172  Sum_probs=114.6

Q ss_pred             EEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccc---cceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859           9 VVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL---GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         9 ~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      ++.++ |+.|| .-.|..|.|=...+.=...+...+-..   ..=+.++|+||+..||.+...|+|+++|+.. ..+..+
T Consensus         3 ~~~~~~Gk~lA-i~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLA-ILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI   80 (282)
T ss_pred             eeecCCCcEEE-EEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence            45566 65554 456677777655442112222222222   2347899999999999999999999999854 433333


Q ss_pred             eccC-------cceeEEEE-eec-----CCceeeeeeecCCCCeEEEEEcC-----CCceeeEEeec-CCcceEEEEEEe
Q psy6859          85 KLDF-------TPLTVECI-HYL-----GDAIPTAAVSDQDSSRVHIYDCK-----GNDMINMIKLD-FTPLTVECIHYL  145 (261)
Q Consensus        85 ~~~~-------~~~~~~~~-~~~-----~~~~~~~~~s~~~d~~i~i~d~~-----~~~~~~~~~~~-~~~~~~~~~~~~  145 (261)
                      ....       ..+..+.+ ...     ...++++    ...|.++-|-+.     ..+....+... ..+..|.++.++
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi----~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~  156 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI----NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH  156 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEE----eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence            3211       11111211 111     1233444    566666655542     12233334332 236688999999


Q ss_pred             CCCCceEEEEecCCCe----------EEEEEccCCCccc----ee----------------e--------ccCcccCeEE
Q psy6859         146 GDAIPTAAVSDQDSSH----------VHIYDCKGNGTPL----HV----------------L--------DRLHTKPVVL  187 (261)
Q Consensus       146 ~~~~~~~~~~~~~d~~----------i~i~d~~~~~~~~----~~----------------~--------~~~~~~~v~~  187 (261)
                      |... ++++.|.....          +.-|.+- ++.|-    ..                +        .......|..
T Consensus       157 p~h~-LLlVgG~~~~~~~~s~a~~~GLtaWRiL-~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k  234 (282)
T PF15492_consen  157 PKHR-LLLVGGCEQNQDGMSKASSCGLTAWRIL-SDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK  234 (282)
T ss_pred             CCCC-EEEEeccCCCCCccccccccCceEEEEc-CCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence            9876 44565544332          5556543 21110    00                0        0123567889


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         188 IKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       188 ~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      |..||||+.||+...+|.|.+|++.+
T Consensus       235 mSlSPdg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  235 MSLSPDGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             EEECCCCCEEEEEEcCCeEEEEecCc
Confidence            99999999999999999999999854

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=1.1e-07  Score=74.82  Aligned_cols=194  Identities=7%  Similarity=-0.077  Sum_probs=114.0

Q ss_pred             CeEEEEEcC-CCe-EEEecC---CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCC--CcEEEEEcc
Q psy6859           5 PITHVVVTK-TDF-VITASN---DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASD--KAMKVFDVI   76 (261)
Q Consensus         5 ~v~~~~~~~-~~~-l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d--g~v~~wd~~   76 (261)
                      .+..-.|+| ++. ++..+.   +..|.++|+.++..+.+..   ..+......|+|||+.++.. +.+  ..|.++|+.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            456788999 763 554333   3568888887764333332   33455667899999877643 333  467788887


Q ss_pred             ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859          77 NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                      +++..+ +...........++++++.++...- ......|.++|+.+++..+.... ..  .  ...|+|++..+++++.
T Consensus       266 ~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~~-g~--~--~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        266 TKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVFH-GK--N--NSSVSTYKNYIVYSSR  338 (419)
T ss_pred             CCcEEE-cccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCccC-CC--c--CceECCCCCEEEEEEc
Confidence            766433 3222212234468889987776510 11223688889888765443321 11  1  2489999997544443


Q ss_pred             cCC-------CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcC-CC--eEEEeecc
Q psy6859         157 QDS-------SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK-AG--ILEYWSGY  212 (261)
Q Consensus       157 ~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~  212 (261)
                      ..+       ..|.+.|+. ++. .+.+. .. .......|+|||+.|+.... .+  .+.+.++.
T Consensus       339 ~~~~~~~~~~~~I~v~d~~-~g~-~~~LT-~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        339 ETNNEFGKNTFNLYLISTN-SDY-IRRLT-AN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             CCCcccCCCCcEEEEEECC-CCC-eEECC-CC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence            221       368888886 554 34453 22 23345889999997755443 23  35555653

>KOG2695|consensus

Probab=99.13  E-value=5e-10  Score=81.51  Aligned_cols=162  Identities=9%  Similarity=0.097  Sum_probs=112.2

Q ss_pred             EEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-----ceeeeeeccCccee
Q psy6859          18 ITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-----DMINMIKLDFTPLT   92 (261)
Q Consensus        18 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-----~~~~~~~~~~~~~~   92 (261)
                      ++.+.+..|-+-+++++   ..+.|. ..+.|.++.|...++++..|.++|.|..+|++.+     .+...+..+ ..++
T Consensus       228 fs~G~sqqv~L~nvetg---~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~-Ssvt  302 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETG---HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD-SSVT  302 (425)
T ss_pred             ecccccceeEEEEeecc---cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC-cchh
Confidence            56666778888888875   333444 5678999999988889999999999999999865     233333322 2233


Q ss_pred             EEE-EeecCCceeeeeeecCCCCeEEEEEcCCCce---eeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEcc
Q psy6859          93 VEC-IHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM---INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCK  168 (261)
Q Consensus        93 ~~~-~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  168 (261)
                      ++. +..++..+.+.    +.+|+|++||++--++   +..++.|.....-.-+...+...  +++++++|...+||.++
T Consensus       303 slq~Lq~s~q~LmaS----~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg--~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  303 SLQILQFSQQKLMAS----DMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG--SIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             hhhhhccccceEeec----cCcCceeEeeehhhhcccceeeeecccccccccccccccccc--eEEEccCeeEEEEEecc
Confidence            333 33356666665    8999999999987665   77777765544444444455543  37788999999999999


Q ss_pred             CCCccceeecc---CcccCeEEEEEc
Q psy6859         169 GNGTPLHVLDR---LHTKPVVLIKFN  191 (261)
Q Consensus       169 ~~~~~~~~~~~---~~~~~v~~~~~~  191 (261)
                       .+.++.+++.   ..+..+.+++|.
T Consensus       377 -~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  377 -SGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             -cCceeeccCCCCccccccccceehh
Confidence             9999888861   122345555654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.12  E-value=1.8e-07  Score=81.68  Aligned_cols=200  Identities=12%  Similarity=0.061  Sum_probs=126.9

Q ss_pred             eEEEEEcC-CCeEE-EecCCCeEEEEeccCCceeeeEEeecc-----------------ccceeEEEEee-CCCEEEEEe
Q psy6859           6 ITHVVVTK-TDFVI-TASNDGHIKFWKKQEEGIEFVKHFRSH-----------------LGVIHSICTNY-NGTLLCTVA   65 (261)
Q Consensus         6 v~~~~~~~-~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~s~~   65 (261)
                      -..|++.+ ++.|+ +-...+.|+++|..++   .+.++.+-                 -.....++++| ++..+++.+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~---~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNE---TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCC---EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            46788887 66544 4455678999988764   22222110                 01235789999 566667777


Q ss_pred             CCCcEEEEEccccceeeeeecc---------------CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE
Q psy6859          66 SDKAMKVFDVINFDMINMIKLD---------------FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI  130 (261)
Q Consensus        66 ~dg~v~~wd~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~  130 (261)
                      .++.|++||..++.... +...               ......+.++++++.++.+   .+.++.|++||+.++......
T Consensus       703 ~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVA---Ds~n~~Irv~D~~tg~~~~~~  778 (1057)
T PLN02919        703 GQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIA---DSESSSIRALDLKTGGSRLLA  778 (1057)
T ss_pred             CCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEE---ECCCCeEEEEECCCCcEEEEE
Confidence            88899999987664321 1100               0112335667777655433   367799999999876532111


Q ss_pred             eec-----------C--------CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeecc------------
Q psy6859         131 KLD-----------F--------TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR------------  179 (261)
Q Consensus       131 ~~~-----------~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------  179 (261)
                      ...           .        .-.....+++++++.  ++++...++.|++||.. ++........            
T Consensus       779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~--LYVADs~N~rIrviD~~-tg~v~tiaG~G~~G~~dG~~~~  855 (1057)
T PLN02919        779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ--IYVADSYNHKIKKLDPA-TKRVTTLAGTGKAGFKDGKALK  855 (1057)
T ss_pred             ecccccCcccccccCCCCchhhhhccCCceeeEeCCCc--EEEEECCCCEEEEEECC-CCeEEEEeccCCcCCCCCcccc
Confidence            000           0        001235788889886  47888889999999987 5543322210            


Q ss_pred             CcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccc
Q psy6859         180 LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       180 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  215 (261)
                      +.-.....++++++|+++++-+.++.|++||+.++.
T Consensus       856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        856 AQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             cccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            112356889999999988888899999999997754

>KOG3914|consensus

Probab=99.12  E-value=4.2e-09  Score=78.07  Aligned_cols=158  Identities=13%  Similarity=0.089  Sum_probs=106.8

Q ss_pred             eeEEEEeeCCCEEEEEeCCCcEEEEEccccc----eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC
Q psy6859          49 IHSICTNYNGTLLCTVASDKAMKVFDVINFD----MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN  124 (261)
Q Consensus        49 v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~  124 (261)
                      ...+..++++++++.+..+....+++.....    .+........+..+..+..+.. +..+ -..+....+.+|....+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~s-v~v~-dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTS-VLVA-DKAGDVYSFDILSADSG  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccce-EEEE-eecCCceeeeeeccccc
Confidence            3445567888899988888887777765433    2333333444433333333322 2222 12245555666665554


Q ss_pred             ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC
Q psy6859         125 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG  204 (261)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  204 (261)
                      .+...+   .+...+..++++||...  ++++..|..|++-... ....+..+..+|+..|..++.-++ +.|++++.|+
T Consensus       143 ~~~~~l---GhvSml~dVavS~D~~~--IitaDRDEkIRvs~yp-a~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~  215 (390)
T KOG3914|consen  143 RCEPIL---GHVSMLLDVAVSPDDQF--IITADRDEKIRVSRYP-ATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDK  215 (390)
T ss_pred             Ccchhh---hhhhhhheeeecCCCCE--EEEecCCceEEEEecC-cccchhhhccccHhheeeeeeccC-ceeeecCCCC
Confidence            333332   24557899999999975  8899999999999887 556677766689999999999765 4589999999


Q ss_pred             eEEEeeccccc
Q psy6859         205 ILEYWSGYKQE  215 (261)
Q Consensus       205 ~i~iwd~~~~~  215 (261)
                      +|++||+.+++
T Consensus       216 tlr~Wd~~sgk  226 (390)
T KOG3914|consen  216 TLRLWDITSGK  226 (390)
T ss_pred             cEEEEecccCC
Confidence            99999997754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.09  E-value=3.6e-10  Score=57.33  Aligned_cols=38  Identities=16%  Similarity=0.318  Sum_probs=35.7

Q ss_pred             ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859         172 TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       172 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      +++.+++ +|..+|++++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5678887 9999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309|consensus

Probab=99.07  E-value=2.8e-09  Score=85.14  Aligned_cols=229  Identities=11%  Similarity=0.160  Sum_probs=142.5

Q ss_pred             eEEEEEcC---CC-eEEEecCCCeEEEEeccCCc-eeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEccccc
Q psy6859           6 ITHVVVTK---TD-FVITASNDGHIKFWKKQEEG-IEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         6 v~~~~~~~---~~-~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      |-.+.|+|   -. .+++.+. ..-.+|++.... ......+.+|...|+.+.|.|. ...+++++-|-.+..||+++..
T Consensus        70 vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~  148 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH  148 (1081)
T ss_pred             hcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence            44566776   23 4555444 455589886532 2444567889999999999874 3488999999999999998654


Q ss_pred             -eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          80 -MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                       .+..+..-.....-+.++.....+.+.    +..+.|.+||++.+ .++..++.  +...+..+.|+.-.. ..+.+.+
T Consensus       149 ~p~ys~~~w~s~asqVkwnyk~p~vlas----shg~~i~vwd~r~gs~pl~s~K~--~vs~vn~~~fnr~~~-s~~~s~~  221 (1081)
T KOG0309|consen  149 RPFYSTSSWRSAASQVKWNYKDPNVLAS----SHGNDIFVWDLRKGSTPLCSLKG--HVSSVNSIDFNRFKY-SEIMSSS  221 (1081)
T ss_pred             cceeeeecccccCceeeecccCcchhhh----ccCCceEEEeccCCCcceEEecc--cceeeehHHHhhhhh-hhhcccC
Confidence             333333222223333443333333333    67889999999866 45666665  444667777765432 2377888


Q ss_pred             CCCeEEEEEccCCCcc-ceeeccCcccCeEEEEEcCCCC--EEEEEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859         158 DSSHVHIYDCKGNGTP-LHVLDRLHTKPVVLIKFNPIYQ--VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                      .|++|++||.....+. .+.+  ..+.+|..-++-|-|.  ++.---.+..+.+++.++......     .....+++..
T Consensus       222 ~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n-----~~~~~~pVh~  294 (1081)
T KOG0309|consen  222 NDGTVKFWDYSKSTTESKRTV--TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWN-----VFDLNTPVHT  294 (1081)
T ss_pred             CCCceeeecccccccccceec--cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhc-----cccCCcceee
Confidence            9999999999733322 2333  4677888888888665  332222233565665543211100     0023578889


Q ss_pred             cCCCccceeeeeECC
Q psy6859         235 FAKNKTYPSGLSFSP  249 (261)
Q Consensus       235 ~~~~~~~v~~~~~s~  249 (261)
                      +.||.+.|....|-.
T Consensus       295 F~GH~D~V~eFlWR~  309 (1081)
T KOG0309|consen  295 FVGHDDVVLEFLWRK  309 (1081)
T ss_pred             ecCcchHHHHHhhhh
Confidence            999998887766644

>KOG1275|consensus

Probab=99.06  E-value=1e-08  Score=83.78  Aligned_cols=185  Identities=12%  Similarity=0.175  Sum_probs=134.5

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEE
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVE   94 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   94 (261)
                      ..++.|+....+..+|+.+.  +..+...-..+.|.-++  .+++++.+|...|+|.+-|.++.+.+.++..+...  +.
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~--~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s--iS  221 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTE--KETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS--IS  221 (1118)
T ss_pred             cceeecchhhheeeeecccc--eeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccc--ee
Confidence            35666777777777888775  44444433333455554  46789999999999999999999999998876654  45


Q ss_pred             EEeecCCceeeeeeecC-----CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC
Q psy6859          95 CIHYLGDAIPTAAVSDQ-----DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG  169 (261)
Q Consensus        95 ~~~~~~~~~~~~~~s~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  169 (261)
                      .+.-.|+.++++.+|.-     .|..|++||++.-+.+..+..+..|   .-+.|.|..... ++..+..|...+-|...
T Consensus       222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P---~flrf~Psl~t~-~~V~S~sGq~q~vd~~~  297 (1118)
T KOG1275|consen  222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP---QFLRFHPSLTTR-LAVTSQSGQFQFVDTAT  297 (1118)
T ss_pred             eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc---hhhhhcccccce-EEEEecccceeeccccc
Confidence            56667888888866643     3788999999988877777766554   456677776654 45556689999999432


Q ss_pred             CCcc---ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859         170 NGTP---LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       170 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      ...+   +..+. .....+..++++++++.+|.+..+|.|.+|-
T Consensus       298 lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  298 LSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            2223   33332 4455699999999999999999999999997

>KOG1912|consensus

Probab=99.06  E-value=7.1e-08  Score=77.81  Aligned_cols=232  Identities=10%  Similarity=0.090  Sum_probs=149.5

Q ss_pred             CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCC------------CEEEEEeCCCcEE
Q psy6859           4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNG------------TLLCTVASDKAMK   71 (261)
Q Consensus         4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~s~~~dg~v~   71 (261)
                      ..-.++.|+|+.++|-|+. ..|.+-|..+-  +.++.+..|+..|+.+.|.|-.            -.|+++...|.|.
T Consensus        16 sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   16 SNRNAADWSPSGLIAYGSH-SLVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             ccccccccCccceEEEecC-ceEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            3356788999778888876 56777787765  8888999999999999997632            2577778889999


Q ss_pred             EEEccccceeeeeeccCcceeEEEEee---cC-CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC
Q psy6859          72 VFDVINFDMINMIKLDFTPLTVECIHY---LG-DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        72 ~wd~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                      +||+..+..+..++.+..+...+++.+   +. ..++++    ....++.+|+..+|+..-....  ......|+.+.|-
T Consensus        93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI----h~ss~lvLwntdtG~k~Wk~~y--s~~iLs~f~~DPf  166 (1062)
T KOG1912|consen   93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI----HGSSTLVLWNTDTGEKFWKYDY--SHEILSCFRVDPF  166 (1062)
T ss_pred             EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe----cCCcEEEEEEccCCceeecccc--CCcceeeeeeCCC
Confidence            999999888888877776665555544   22 334444    6788999999999987666554  3445667888887


Q ss_pred             CCceEEEEecCCCeEEEEEccCCC---ccceeec--cCccc------------C-------------eEEEEEcCCCCEE
Q psy6859         148 AIPTAAVSDQDSSHVHIYDCKGNG---TPLHVLD--RLHTK------------P-------------VVLIKFNPIYQVV  197 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~--~~~~~------------~-------------v~~~~~~~~~~~l  197 (261)
                      ....+.+.++ .|.+.+-+.-...   .+.+.++  ..|..            .             ...++|+|.-+.+
T Consensus       167 d~rh~~~l~s-~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~  245 (1062)
T KOG1912|consen  167 DSRHFCVLGS-KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI  245 (1062)
T ss_pred             CcceEEEEcc-CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence            6665566655 6676666653121   1122221  12211            0             0124678877755


Q ss_pred             EEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCc--eEEEeecC
Q psy6859         198 VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGN--KFVTISMD  260 (261)
Q Consensus       198 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~D  260 (261)
                      +-......+.++|++-               ..++....-..+.+.-+.|-|+++  .|.+.-.|
T Consensus       246 lfi~~prellv~dle~---------------~~~l~vvpier~~akfv~vlP~~~rd~LfclH~n  295 (1062)
T KOG1912|consen  246 LFITFPRELLVFDLEY---------------ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSN  295 (1062)
T ss_pred             EEEEeccceEEEcchh---------------hceeEEEEeccCCcceeEeccCCCcceEEEEecC
Confidence            5555567799999842               344444433344444455555543  34444433

>KOG1832|consensus

Probab=99.06  E-value=2.5e-10  Score=92.78  Aligned_cols=187  Identities=13%  Similarity=0.142  Sum_probs=130.5

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC--cEEEEEccc-
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK--AMKVFDVIN-   77 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~v~~wd~~~-   77 (261)
                      |+...+|++|+- .+.|+.|+..|.|+++++.++  .......+|.++|+.+.-+.||..+++.+.-.  -..+|++.+ 
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccccCchHHHhccccc
Confidence            567889999998 789999999999999999988  77778899999999999998998877765433  467999864 


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC--CcceEEEEEEeCCCCceEEEE
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF--TPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      +....++.    ...++.++.....- .+   |.......+||++++.++.++-...  ....-.+..|+|....  ++ 
T Consensus      1178 ~~~~Hsf~----ed~~vkFsn~~q~r-~~---gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L--Il- 1246 (1516)
T KOG1832|consen 1178 GGPRHSFD----EDKAVKFSNSLQFR-AL---GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL--IL- 1246 (1516)
T ss_pred             cCcccccc----ccceeehhhhHHHH-Hh---cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce--Ee-
Confidence            34444443    22334444332221 11   2455778999999998776632111  1112367889999862  33 


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                        .||  .+||.+ ..+.++.|. ..... ..=.|+|.|..++.-+     .|||+++
T Consensus      1247 --ndG--vLWDvR-~~~aIh~FD-~ft~~-~~G~FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1247 --NDG--VLWDVR-IPEAIHRFD-QFTDY-GGGGFHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred             --eCc--eeeeec-cHHHHhhhh-hheec-ccccccCCCceEEeec-----hhhhhHH
Confidence              355  589999 667888885 33322 2236999999888765     4899865

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.01  E-value=2.6e-06  Score=62.31  Aligned_cols=176  Identities=11%  Similarity=-0.018  Sum_probs=108.0

Q ss_pred             CCCeEEEEeccCCceeeeEEeeccccceeEEE--EeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeec
Q psy6859          22 NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSIC--TNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYL   99 (261)
Q Consensus        22 ~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~   99 (261)
                      .+|+|..||..++  +.+..... ........  ..+++..+++++.++.+..||..+|+.+..+......... . ...
T Consensus         1 ~~g~l~~~d~~tG--~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~-~~~   75 (238)
T PF13360_consen    1 DDGTLSALDPRTG--KELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-P-VVD   75 (238)
T ss_dssp             -TSEEEEEETTTT--EEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-E-EEE
T ss_pred             CCCEEEEEECCCC--CEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-e-eec
Confidence            3689999999877  55555542 11122222  3345667888889999999999999998888764432222 1 234


Q ss_pred             CCceeeeeeecCCCCeEEEEEcCCCceeeEE-eecCCcc---eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccce
Q psy6859         100 GDAIPTAAVSDQDSSRVHIYDCKGNDMINMI-KLDFTPL---TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLH  175 (261)
Q Consensus       100 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  175 (261)
                      ++.++..    +.++.+..+|.++++.+... .......   ......+.  +..  ++.+..++.|..+|.+ +++.+.
T Consensus        76 ~~~v~v~----~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~g~l~~~d~~-tG~~~w  146 (238)
T PF13360_consen   76 GGRVYVG----TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDR--LYVGTSSGKLVALDPK-TGKLLW  146 (238)
T ss_dssp             TTEEEEE----ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTE--EEEEETCSEEEEEETT-TTEEEE
T ss_pred             ccccccc----cceeeeEecccCCcceeeeeccccccccccccccCceEe--cCE--EEEEeccCcEEEEecC-CCcEEE
Confidence            4555554    57789999999999988774 3321111   12223333  322  5566668999999999 999888


Q ss_pred             eeccCcccC----------eEEEEEcCCCCEEEEEcCCCe-EEEeecccc
Q psy6859         176 VLDRLHTKP----------VVLIKFNPIYQVVVSVDKAGI-LEYWSGYKQ  214 (261)
Q Consensus       176 ~~~~~~~~~----------v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~  214 (261)
                      ... .....          +..-....++ .++.++.++. +.+ |+.++
T Consensus       147 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg  193 (238)
T PF13360_consen  147 KYP-VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATG  193 (238)
T ss_dssp             EEE-SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTT
T ss_pred             Eee-cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCC
Confidence            776 32211          1122222344 6666666775 555 88653

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.01  E-value=3.6e-09  Score=76.29  Aligned_cols=205  Identities=13%  Similarity=0.145  Sum_probs=123.0

Q ss_pred             ccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc-----eeeeeec-------------cCcceeEEEEeecCCc-eeee
Q psy6859          46 LGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD-----MINMIKL-------------DFTPLTVECIHYLGDA-IPTA  106 (261)
Q Consensus        46 ~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~-----~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~  106 (261)
                      ...|+++.|...|.|+++|...|.|.++.-....     ....++.             ......+.++.+.+.. ++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4568999999999999999999999999754322     1111221             1122233444444332 2222


Q ss_pred             eeecCCCCeEEEEEcCCCceee----------------------EE-------------------eecCCcceEEEEEEe
Q psy6859         107 AVSDQDSSRVHIYDCKGNDMIN----------------------MI-------------------KLDFTPLTVECIHYL  145 (261)
Q Consensus       107 ~~s~~~d~~i~i~d~~~~~~~~----------------------~~-------------------~~~~~~~~~~~~~~~  145 (261)
                          +.|++|++|.+.......                      .+                   ....++..+.+++++
T Consensus       106 ----tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         106 ----TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             ----cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence                689999999886541100                      00                   112345567888898


Q ss_pred             CCCCceEEEEecCCCeEEEEEccCCCccce--eeccCc-----ccCeEEEEEcCCCC-EEEEEcCCCeEEEeeccccccc
Q psy6859         146 GDAIPTAAVSDQDSSHVHIYDCKGNGTPLH--VLDRLH-----TKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFK  217 (261)
Q Consensus       146 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~~~~~~-----~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  217 (261)
                      .+...  ++++ +|=.|.+|++........  .++ +|     ..-|++..|+|... .+.-.+..|.|++-|+++...-
T Consensus       182 sD~et--~lSa-DdLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc  257 (460)
T COG5170         182 SDKET--LLSA-DDLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC  257 (460)
T ss_pred             Cchhe--eeec-cceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence            88875  5554 488899999873332222  222 33     34588899999754 5566677999999999854321


Q ss_pred             CCeeeeeecc-cccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         218 FPKCVHFESK-LDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       218 ~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      ...+..++.. .+....-+.+-...|..+.|+|+|+++++-+
T Consensus       258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd  299 (460)
T COG5170         258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD  299 (460)
T ss_pred             cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec
Confidence            1111111110 0111111223346788999999999998754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.00  E-value=3.2e-06  Score=62.33  Aligned_cols=201  Identities=15%  Similarity=0.177  Sum_probs=122.4

Q ss_pred             eEEEEEcC--CCeEEEecCCCe-EEEEeccCCceeeeEEeeccccce--eEEEEeeCCCEEEEEeC-----CCcEEEEEc
Q psy6859           6 ITHVVVTK--TDFVITASNDGH-IKFWKKQEEGIEFVKHFRSHLGVI--HSICTNYNGTLLCTVAS-----DKAMKVFDV   75 (261)
Q Consensus         6 v~~~~~~~--~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~-----dg~v~~wd~   75 (261)
                      ...++.+|  ...++.+-.-|+ ..+||..++  +....+....+.-  =.-.|++||++|++.-.     .|.|-|||.
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g--~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTG--QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCC--ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            34566777  345555555553 567787776  3433333222211  13579999999998754     478999999


Q ss_pred             c-ccceeeeeeccCcceeEEEEeecCCceeeeeee---------------cCCCCeEEEEEcCCCceeeEEee--cCCcc
Q psy6859          76 I-NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVS---------------DQDSSRVHIYDCKGNDMINMIKL--DFTPL  137 (261)
Q Consensus        76 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---------------~~~d~~i~i~d~~~~~~~~~~~~--~~~~~  137 (261)
                      . +.+.+.++..+.-.-.-+.+.++++.++.. .-               .+.+-.+.+.|..+++.+.....  ..+..
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA-NGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVA-NGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEE-cCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence            8 556666666443323334455666444332 00               13455677788889988888666  44666


Q ss_pred             eEEEEEEeCCCCceEEEEecCCCe-------EEEEEccCCCccceeec------cCcccCeEEEEEcCCCCEEEEEc-CC
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSH-------VHIYDCKGNGTPLHVLD------RLHTKPVVLIKFNPIYQVVVSVD-KA  203 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~-------i~i~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~-~d  203 (261)
                      .++-+++.+++.-  ++..-..|.       +.+++.   +..+..+.      ......+-+|++++++.++++.+ .-
T Consensus       164 SiRHLa~~~~G~V--~~a~Q~qg~~~~~~PLva~~~~---g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG  238 (305)
T PF07433_consen  164 SIRHLAVDGDGTV--AFAMQYQGDPGDAPPLVALHRR---GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG  238 (305)
T ss_pred             ceeeEEecCCCcE--EEEEecCCCCCccCCeEEEEcC---CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence            8899999999862  333222221       333332   23233332      12356789999999999885555 77


Q ss_pred             CeEEEeecccc
Q psy6859         204 GILEYWSGYKQ  214 (261)
Q Consensus       204 g~i~iwd~~~~  214 (261)
                      +.+.+||..++
T Consensus       239 g~~~~~d~~tg  249 (305)
T PF07433_consen  239 GRVAVWDAATG  249 (305)
T ss_pred             CEEEEEECCCC
Confidence            88999998653

>KOG1912|consensus

Probab=98.99  E-value=1e-07  Score=76.93  Aligned_cols=202  Identities=9%  Similarity=0.053  Sum_probs=138.5

Q ss_pred             CCCCeEEEEEcC-C------------CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee---CC-CEEEEE
Q psy6859           2 HRSPITHVVVTK-T------------DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY---NG-TLLCTV   64 (261)
Q Consensus         2 H~~~v~~~~~~~-~------------~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~s~   64 (261)
                      |+..|+.+.|.| .            -+||++...|.|.+||....  ..+..++.|.+++..++|-+   +. ..|++-
T Consensus        54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI  131 (1062)
T KOG1912|consen   54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--SVINWLSHSNDSVQDLCWVPARDDSRDVLLAI  131 (1062)
T ss_pred             CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--hhhhhhcCCCcchhheeeeeccCcchheeEEe
Confidence            788999999986 2            15778888899999999876  66777888999999999975   33 356666


Q ss_pred             eCCCcEEEEEccccceeeeeeccCcceeEEEEee-cCCceeeeeeecCCCCeEEEEEcCCC-c---eeeEEeecC-----
Q psy6859          65 ASDKAMKVFDVINFDMINMIKLDFTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCKGN-D---MINMIKLDF-----  134 (261)
Q Consensus        65 ~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~-~---~~~~~~~~~-----  134 (261)
                      ....++.+|+..+|+..........+..+..+.| +.+.+...    +..|.+.+-+.-.. +   +.+.+....     
T Consensus       132 h~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l----~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl  207 (1062)
T KOG1912|consen  132 HGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL----GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDL  207 (1062)
T ss_pred             cCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE----ccCceEEEEeccCCCCCCCCceeEEEecCccch
Confidence            6777999999999998887776666655555554 33333333    45555555443211 0   111111100     


Q ss_pred             ---------------C------cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCC
Q psy6859         135 ---------------T------PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPI  193 (261)
Q Consensus       135 ---------------~------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  193 (261)
                                     .      +..+..++|+|..+..++++-  ...+.++|++ -..++..+. ...+.+.-+.+-|+
T Consensus       208 ~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~--prellv~dle-~~~~l~vvp-ier~~akfv~vlP~  283 (1062)
T KOG1912|consen  208 AHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF--PRELLVFDLE-YECCLAVVP-IERGGAKFVDVLPD  283 (1062)
T ss_pred             hhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe--ccceEEEcch-hhceeEEEE-eccCCcceeEeccC
Confidence                           0      112334677888877666653  6779999998 777887775 55555666777776


Q ss_pred             CC--EEEEEcCCCeEEEeeccc
Q psy6859         194 YQ--VVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       194 ~~--~l~~~~~dg~i~iwd~~~  213 (261)
                      ++  .|+..-.||.+.+|-.+.
T Consensus       284 ~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  284 PRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             CCcceEEEEecCCeEEEEEeec
Confidence            65  789999999999997654

>KOG4714|consensus

Probab=98.95  E-value=4.7e-09  Score=73.70  Aligned_cols=73  Identities=18%  Similarity=0.287  Sum_probs=63.1

Q ss_pred             CCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccc
Q psy6859           4 SPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         4 ~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      +.|++++-+|  .+++++|+.||.+.+||.... ..+...++.|+.+|..+.|+| ++..|++++.||.+.-||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3588888888  568899999999999999875 256677889999999999998 678999999999999999754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.95  E-value=1.5e-06  Score=74.72  Aligned_cols=250  Identities=12%  Similarity=0.110  Sum_probs=145.8

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccC-------------Cceeee--------EEeec-----------------
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQE-------------EGIEFV--------KHFRS-----------------   44 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~-------------~~~~~~--------~~~~~-----------------   44 (261)
                      ..|.+++||| ++.|+....++++.+-..+-             +..+.+        .+|+|                 
T Consensus       121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~  200 (928)
T PF04762_consen  121 SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPK  200 (928)
T ss_pred             CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCc
Confidence            5799999999 88888888888887654210             000000        11111                 


Q ss_pred             -------cccceeEEEEeeCCCEEEEEeC---C---CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecC
Q psy6859          45 -------HLGVIHSICTNYNGTLLCTVAS---D---KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  111 (261)
Q Consensus        45 -------~~~~v~~~~~~~~~~~l~s~~~---d---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  111 (261)
                             +.+.-..++|-.||+++|+.+-   .   +.+|+|+- +|+....-+.-..-.....+.|.|+.+++.-- -.
T Consensus       201 ~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~  278 (928)
T PF04762_consen  201 VDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQR-LP  278 (928)
T ss_pred             cccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEE-cC
Confidence                   2223467889999999998774   2   57999994 56655544433333456788899988877632 23


Q ss_pred             CCCeEEEEEcCCCceeeEEeec--CCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc--cceeeccCcccCeEE
Q psy6859         112 DSSRVHIYDCKGNDMINMIKLD--FTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT--PLHVLDRLHTKPVVL  187 (261)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~  187 (261)
                      ....|.+|.-+ |-.-..+...  .....+..+.|++++.-  ++.-. ...|.+|-.. +..  +.+.+.......+..
T Consensus       279 ~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~i--LAv~~-~~~vqLWt~~-NYHWYLKqei~~~~~~~~~~  353 (928)
T PF04762_consen  279 DRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEI--LAVWL-EDRVQLWTRS-NYHWYLKQEIRFSSSESVNF  353 (928)
T ss_pred             CCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCE--EEEEe-cCCceEEEee-CCEEEEEEEEEccCCCCCCc
Confidence            34567777744 3333444443  24457899999999984  33333 3449999987 543  222332123344556


Q ss_pred             EEEcCCCC-EEEEEcCCCeEEEeecccccccC----C----eeeeeecc-------------cccceeecCCCccceeee
Q psy6859         188 IKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKF----P----KCVHFESK-------------LDTDLFEFAKNKTYPSGL  245 (261)
Q Consensus       188 ~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~----~----~~~~~~~~-------------~~~~~~~~~~~~~~v~~~  245 (261)
                      +.|+|... .|.....+|.+..++..-.....    +    .....+-.             ..-..+.+. ....|.++
T Consensus       354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~v  432 (928)
T PF04762_consen  354 VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDV  432 (928)
T ss_pred             eEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEE
Confidence            99999654 56666666777665543111100    0    00111100             000112222 34689999


Q ss_pred             eECCCCceEEEeecCC
Q psy6859         246 SFSPDGNKFVTISMDR  261 (261)
Q Consensus       246 ~~s~~~~~l~s~~~Dg  261 (261)
                      +|++++..+|+-..||
T Consensus       433 af~~~~~~~avl~~d~  448 (928)
T PF04762_consen  433 AFSPSNSRFAVLTSDG  448 (928)
T ss_pred             EEeCCCCeEEEEECCC
Confidence            9999987777666654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.95  E-value=1.3e-06  Score=68.51  Aligned_cols=182  Identities=9%  Similarity=0.008  Sum_probs=105.0

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeE
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTV   93 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   93 (261)
                      +..++.++.++.+..+|.+++  +.+...... +.+.+.-.. .+..++.++.++.+..||..+++.+.+++........
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~  180 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDG--KELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL  180 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCC--cEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence            345666777788888887665  333333211 222211111 2346777788999999999999988776643322110


Q ss_pred             ----EEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc-----eE----EEEEEeCCCCceEEEEecCCC
Q psy6859          94 ----ECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL-----TV----ECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        94 ----~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~d~  160 (261)
                          .... .+..++.    +..++.+..+|+++++.+-.........     ..    ...... ++ .  ++.++.++
T Consensus       181 ~~~~sp~~-~~~~v~~----~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~-~--vy~~~~~g  251 (377)
T TIGR03300       181 RGSASPVI-ADGGVLV----GFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GG-Q--VYAVSYQG  251 (377)
T ss_pred             cCCCCCEE-ECCEEEE----ECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CC-E--EEEEEcCC
Confidence                0011 1233333    3678999999999987665433211100     00    011111 22 1  55566789


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      .++.||.. +++.+...+ . .. .....  ..+..++.++.+|.+..+|..++
T Consensus       252 ~l~a~d~~-tG~~~W~~~-~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG  299 (377)
T TIGR03300       252 RVAALDLR-SGRVLWKRD-A-SS-YQGPA--VDDNRLYVTDADGVVVALDRRSG  299 (377)
T ss_pred             EEEEEECC-CCcEEEeec-c-CC-ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence            99999998 888776664 1 11 11222  24567878888999999998654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2066|consensus

Probab=98.92  E-value=1e-07  Score=77.09  Aligned_cols=187  Identities=13%  Similarity=0.075  Sum_probs=121.5

Q ss_pred             CeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859           5 PITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         5 ~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      .++|++++ ++.++-|..+|.|++.+.+..   + .+...|...      ..+|+++++|+.||+|.|-.+-+.+...++
T Consensus        41 ~is~~av~-~~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   41 AISCCAVH-DKFFALGTHRGAVYLTTCQGN---P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             HHHHHHhh-cceeeeccccceEEEEecCCc---c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            34455554 568999999999999998763   2 333335433      668999999999999999999888877766


Q ss_pred             eccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEE
Q psy6859          85 KLDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVH  163 (261)
Q Consensus        85 ~~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  163 (261)
                      ..+. |...+.++|+ ...-.--+++|+..| +.++.-+=.........+...+.|.++.|.++.    ++=++ |--|+
T Consensus       110 df~r-piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~l----IAWan-d~Gv~  182 (846)
T KOG2066|consen  110 DFKR-PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNL----IAWAN-DDGVK  182 (846)
T ss_pred             ecCC-cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcE----EEEec-CCCcE
Confidence            6543 4566777776 111111123346666 777654321222222444566789999998876    44444 55599


Q ss_pred             EEEccCCCccceeeccCc-----ccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         164 IYDCKGNGTPLHVLDRLH-----TKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       164 i~d~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      +||.. ..+.+..++..+     +.....+.|.++.+ |+.|-.| +|+|..++
T Consensus       183 vyd~~-~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  183 VYDTP-TRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKICSIK  233 (846)
T ss_pred             EEecc-ccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEEEEEe
Confidence            99998 777777775222     12234578877655 4444434 58888886

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.91  E-value=2.2e-06  Score=62.67  Aligned_cols=183  Identities=14%  Similarity=0.061  Sum_probs=112.8

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee-eccCcc--
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI-KLDFTP--   90 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-~~~~~~--   90 (261)
                      +..+++++.++.+..||..++  +.+..+.. .+.+..... .++..++.++.++.++.+|..+|+.+... ......  
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG--~~~W~~~~-~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTG--KVLWRFDL-PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTS--EEEEEEEC-SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             CCEEEEEcCCCEEEEEECCCC--CEEEEeec-cccccceee-ecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            567777889999999999887  55555543 233222222 23446677778889999999999988874 322111  


Q ss_pred             -eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcce---------EEEEEEeCCCCceEEEEecCCC
Q psy6859          91 -LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLT---------VECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        91 -~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                       .........++.++..    ..++.|..+|+++++.+........+..         ...+.+. ++ .  +.....++
T Consensus       112 ~~~~~~~~~~~~~~~~~----~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~--v~~~~~~g  183 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVG----TSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-R--VYVSSGDG  183 (238)
T ss_dssp             TB--SEEEEETTEEEEE----ETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-E--EEEECCTS
T ss_pred             cccccCceEecCEEEEE----eccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-E--EEEEcCCC
Confidence             1122222335555554    5699999999999998888776432211         1222222 33 2  44445566


Q ss_pred             e-EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         161 H-VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       161 ~-i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      . +.+ |+. +++.+...  . ...+..+ ..+++..|+.++.++.|..||++++
T Consensus       184 ~~~~~-d~~-tg~~~w~~--~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  184 RVVAV-DLA-TGEKLWSK--P-ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             SEEEE-ETT-TTEEEEEE--C-SS-ECEC-EECCCTEEEEEETTTEEEEEETTTT
T ss_pred             eEEEE-ECC-CCCEEEEe--c-CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCC
Confidence            5 555 998 77755433  2 2223321 4567777877779999999999653

...

>KOG2114|consensus

Probab=98.90  E-value=8.1e-07  Score=72.62  Aligned_cols=190  Identities=14%  Similarity=0.179  Sum_probs=124.1

Q ss_pred             EcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccc-eeEEEEeeCCCEEEEEeCCC-----cEEEEEcccc-----
Q psy6859          11 VTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGV-IHSICTNYNGTLLCTVASDK-----AMKVFDVINF-----   78 (261)
Q Consensus        11 ~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg-----~v~~wd~~~~-----   78 (261)
                      |++ +..++.|+.+|.|.+.+-.-   +..+.++.+... |..+....+..+|++.+.|+     .+++|+++.-     
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EcCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            355 67899999999998877432   566777777777 55555545556888887765     4899998643     


Q ss_pred             -cee---eeee--c--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEE--cC-CCceeeEEeecCCcceEEEEEEeCC
Q psy6859          79 -DMI---NMIK--L--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD--CK-GNDMINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        79 -~~~---~~~~--~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d--~~-~~~~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                       +++   +.+.  .  ...|..+..++.+-..++.    |-.+|.|..+.  +- .......+. +....+|+.+.+..+
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~----Gf~nG~V~~~~GDi~RDrgsr~~~~-~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVC----GFTNGLVICYKGDILRDRGSRQDYS-HRGKEPITGLALRSD  182 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEE----EecCcEEEEEcCcchhccccceeee-ccCCCCceeeEEecC
Confidence             233   1111  1  2456777777776444444    36789998884  22 221222222 334558999999988


Q ss_pred             CCceEEEEecCCCeEEEEEccCCCcc-ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         148 AIPTAAVSDQDSSHVHIYDCKGNGTP-LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      +...++++.  -..|.+|.+. ...+ ...+. .|..++++-.+++....+++++. ..+.+|+...
T Consensus       183 ~~s~lFv~T--t~~V~~y~l~-gr~p~~~~ld-~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~  244 (933)
T KOG2114|consen  183 GKSVLFVAT--TEQVMLYSLS-GRTPSLKVLD-NNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDG  244 (933)
T ss_pred             CceeEEEEe--cceeEEEEec-CCCcceeeec-cCCccceeeecCCCCccEEEecC-ceEEEEcCCC
Confidence            876444443  4679999997 3333 44465 78888999999886664665554 4599999864

>KOG2695|consensus

Probab=98.90  E-value=6.7e-09  Score=75.79  Aligned_cols=126  Identities=10%  Similarity=0.103  Sum_probs=96.0

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCC---ceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEcccc
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEE---GIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      +.|.++.|.. ++++..|...|.|...|+...   ...+...+. |.+.|+++.... ++++|++.+.+|+|++||.+--
T Consensus       253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~  331 (425)
T KOG2695|consen  253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT  331 (425)
T ss_pred             hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence            5677788888 889999999999999999763   123444454 889999998876 7889999999999999999866


Q ss_pred             ce---eeeeeccCccee--EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC
Q psy6859          79 DM---INMIKLDFTPLT--VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF  134 (261)
Q Consensus        79 ~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~  134 (261)
                      ++   +.++..|.....  ..-+.+....++++    +.|...+||.++.+..+.++....
T Consensus       332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~----GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV----GDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             hcccceeeeecccccccccccccccccceEEEc----cCeeEEEEEecccCceeeccCCCC
Confidence            55   777765543322  22334445555555    899999999999999888877554

>KOG3914|consensus

Probab=98.90  E-value=1.1e-07  Score=70.87  Aligned_cols=161  Identities=12%  Similarity=0.079  Sum_probs=108.0

Q ss_pred             EEEEEcC-CCeEEEecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCc---EEEEEccccce
Q psy6859           7 THVVVTK-TDFVITASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKA---MKVFDVINFDM   80 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~---v~~wd~~~~~~   80 (261)
                      ..+..+| ++++|.+..+....++++....  .++...+. -...-+.+.|..+......+..-|.   +.+|....+..
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            3445667 7889988888887777776543  23333333 2233456666665556555555444   44444443333


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ... -.+......+.++++++.+++.    ..|..|++-....-..+..+-.. |...|..++.-++..   +++++.|+
T Consensus       145 ~~~-lGhvSml~dVavS~D~~~Iita----DRDEkIRvs~ypa~f~IesfclG-H~eFVS~isl~~~~~---LlS~sGD~  215 (390)
T KOG3914|consen  145 EPI-LGHVSMLLDVAVSPDDQFIITA----DRDEKIRVSRYPATFVIESFCLG-HKEFVSTISLTDNYL---LLSGSGDK  215 (390)
T ss_pred             chh-hhhhhhhheeeecCCCCEEEEe----cCCceEEEEecCcccchhhhccc-cHhheeeeeeccCce---eeecCCCC
Confidence            332 2344556778889999888887    99999999887766566665542 445778888877774   88999999


Q ss_pred             eEEEEEccCCCccceeec
Q psy6859         161 HVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~  178 (261)
                      ++++||++ +++.+.++.
T Consensus       216 tlr~Wd~~-sgk~L~t~d  232 (390)
T KOG3914|consen  216 TLRLWDIT-SGKLLDTCD  232 (390)
T ss_pred             cEEEEecc-cCCcccccc
Confidence            99999999 888877664

>KOG1920|consensus

Probab=98.84  E-value=3.7e-06  Score=71.43  Aligned_cols=202  Identities=12%  Similarity=0.141  Sum_probs=127.9

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc----ccc
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV----INF   78 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~----~~~   78 (261)
                      +.|.++.|.. .+.++.+..+|.|.+-|.++...+.+...   .+.|.+++|+||++.++..+..+++.+-+-    -..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            5788888887 77788888999999999887654544444   477999999999999999988888766542    111


Q ss_pred             cee-------------------eeeecc---------------------CcceeEEEEeecCCceeeeeeecCCC-CeEE
Q psy6859          79 DMI-------------------NMIKLD---------------------FTPLTVECIHYLGDAIPTAAVSDQDS-SRVH  117 (261)
Q Consensus        79 ~~~-------------------~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~s~~~d-~~i~  117 (261)
                      +.+                   ..+...                     ......+.+..+|+.++...+....+ +.|+
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence            111                   011100                     00112255666777777655554445 8999


Q ss_pred             EEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE---ecCCCeEEEEEccCC--CccceeeccCcccCeEEEEEcC
Q psy6859         118 IYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS---DQDSSHVHIYDCKGN--GTPLHVLDRLHTKPVVLIKFNP  192 (261)
Q Consensus       118 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~v~~~~~~~  192 (261)
                      +||-+ +. +.....+ ....-.+++|-|.|..  +++   -..|+.|.+|.-..-  +...-.++ ....++..++|+.
T Consensus       226 V~drE-g~-Lns~se~-~~~l~~~LsWkPsgs~--iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  226 VYDRE-GA-LNSTSEP-VEGLQHSLSWKPSGSL--IAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNS  299 (1265)
T ss_pred             Eeccc-ch-hhcccCc-ccccccceeecCCCCe--EeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecC
Confidence            99977 32 2222211 1223467888888763  332   234667999986411  11222222 3344499999999


Q ss_pred             CCCEEEE---EcCCCeEEEeecccc
Q psy6859         193 IYQVVVS---VDKAGILEYWSGYKQ  214 (261)
Q Consensus       193 ~~~~l~~---~~~dg~i~iwd~~~~  214 (261)
                      ++..||+   ......|++|-+.+.
T Consensus       300 ~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  300 NSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCCceeeeecccccceEEEEEecCe
Confidence            9999887   555556999988654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.83  E-value=8.3e-06  Score=64.36  Aligned_cols=108  Identities=19%  Similarity=0.225  Sum_probs=73.7

Q ss_pred             cCCceeeeeeecCCCCeE----EEEEcCCCcee--eEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc
Q psy6859          99 LGDAIPTAAVSDQDSSRV----HIYDCKGNDMI--NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT  172 (261)
Q Consensus        99 ~~~~~~~~~~s~~~d~~i----~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  172 (261)
                      .+..+.++--+-+.+|.+    .+|++...+..  ...... -+..+.+.+++|+...  ++.|+.||.|.+||.. .+ 
T Consensus       217 ~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsip-L~s~v~~ca~sp~E~k--LvlGC~DgSiiLyD~~-~~-  291 (545)
T PF11768_consen  217 QPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIP-LPSQVICCARSPSEDK--LVLGCEDGSIILYDTT-RG-  291 (545)
T ss_pred             CCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEe-cCCcceEEecCcccce--EEEEecCCeEEEEEcC-CC-
Confidence            444455543333444433    35666544322  222222 3457889999999986  8888999999999986 33 


Q ss_pred             cceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         173 PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       173 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                       +..+. ...-.++.++|+|+|.++++|+..|.+.+||+.-
T Consensus       292 -~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  292 -VTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             -eeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence             22232 3455678899999999999999999999999854

>KOG1832|consensus

Probab=98.81  E-value=8.4e-09  Score=84.29  Aligned_cols=161  Identities=14%  Similarity=0.196  Sum_probs=116.7

Q ss_pred             eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859          37 EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRV  116 (261)
Q Consensus        37 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i  116 (261)
                      +..+.++.|+...+|++|+.+.++|+.|+..|.|+++++.+|........|..+++.+.-+.++...++.  +....-..
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lts--ss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTS--SSSSSPLS 1169 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeee--ccccCchH
Confidence            4556778888999999999999999999999999999999999998888888887777777777766554  11233357


Q ss_pred             EEEEcCC-CceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceee-c--cCcccCeEEEEEcC
Q psy6859         117 HIYDCKG-NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVL-D--RLHTKPVVLIKFNP  192 (261)
Q Consensus       117 ~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~--~~~~~~v~~~~~~~  192 (261)
                      .+|++.. +.+.+.+..      -.++.|+.....  -+.|.......+||+. ++.++.++ .  .+.+..-+...|+|
T Consensus      1170 aLW~~~s~~~~~Hsf~e------d~~vkFsn~~q~--r~~gt~~d~a~~YDvq-T~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE------DKAVKFSNSLQF--RALGTEADDALLYDVQ-TCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred             HHhccccccCccccccc------cceeehhhhHHH--HHhcccccceEEEecc-cCcHHHHhcCcchhhhhhccccccCC
Confidence            7899874 344455442      356777766543  3444555678999999 88777763 2  12233346789999


Q ss_pred             CCCEEEEEcCCCeEEEeeccc
Q psy6859         193 IYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       193 ~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      +..+++   .||  .+||++.
T Consensus      1241 ~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred             CcceEe---eCc--eeeeecc
Confidence            988776   466  3799864

>KOG1645|consensus

Probab=98.80  E-value=2.4e-07  Score=69.21  Aligned_cols=75  Identities=16%  Similarity=0.174  Sum_probs=63.5

Q ss_pred             CCCCCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~   77 (261)
                      ||...|..++|+| .+ ++..++.+..|+|.|+++.  ..+..+..+ ..+++++|.-| ..+|..|...|.|.+||++.
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            5677899999999 54 7889999999999999987  677777777 78999999865 45777888999999999985


Q ss_pred             c
Q psy6859          78 F   78 (261)
Q Consensus        78 ~   78 (261)
                      .
T Consensus       268 ~  268 (463)
T KOG1645|consen  268 P  268 (463)
T ss_pred             C
Confidence            4

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.69  E-value=4.6e-05  Score=56.38  Aligned_cols=188  Identities=14%  Similarity=0.117  Sum_probs=117.3

Q ss_pred             EEEcC-CCeEEEe-----cCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-----------------
Q psy6859           9 VVVTK-TDFVITA-----SNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-----------------   65 (261)
Q Consensus         9 ~~~~~-~~~l~s~-----~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-----------------   65 (261)
                      -.||+ |++|++.     ...|.|-|||.. ...+.+.++..|.-.-..+.+.||++.|+.+-                 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            36888 8888775     345889999998 34477888887765667888999997777652                 


Q ss_pred             -CCCcEEEEEccccceeeeeec----cCcceeEEEEeecCCceeeeeeecCCC---CeEEEEEcCCCceeeEEeec----
Q psy6859          66 -SDKAMKVFDVINFDMINMIKL----DFTPLTVECIHYLGDAIPTAAVSDQDS---SRVHIYDCKGNDMINMIKLD----  133 (261)
Q Consensus        66 -~dg~v~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~d---~~i~i~d~~~~~~~~~~~~~----  133 (261)
                       .+-.+.+.|..+|+.+.+..+    +...+..+.+..++.-.+..-+-+...   -.+.+++  .++.+..+...    
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~  212 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQW  212 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHH
Confidence             122455666777887776554    333455555555544333332222111   1122222  22223333221    


Q ss_pred             -CCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeE
Q psy6859         134 -FTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGIL  206 (261)
Q Consensus       134 -~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  206 (261)
                       .-...+-++++++++.. +++++-.-+.+.+||.. +++.+....   -..+..++-.+++ ++++.+ .|.+
T Consensus       213 ~~l~~Y~gSIa~~~~g~~-ia~tsPrGg~~~~~d~~-tg~~~~~~~---l~D~cGva~~~~~-f~~ssG-~G~~  279 (305)
T PF07433_consen  213 RRLNGYIGSIAADRDGRL-IAVTSPRGGRVAVWDAA-TGRLLGSVP---LPDACGVAPTDDG-FLVSSG-QGQL  279 (305)
T ss_pred             HhhCCceEEEEEeCCCCE-EEEECCCCCEEEEEECC-CCCEeeccc---cCceeeeeecCCc-eEEeCC-CccE
Confidence             12247889999999874 46788888999999998 888887764   3346777777776 566555 4544

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.68  E-value=7.6e-05  Score=58.32  Aligned_cols=235  Identities=12%  Similarity=0.051  Sum_probs=121.4

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-----------------------------------------eeeeEEe
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEG-----------------------------------------IEFVKHF   42 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-----------------------------------------~~~~~~~   42 (261)
                      .|+.+.|.+ ...|+.|...|.|.||......                                         ..+..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            589999999 6789999999999999764320                                         1122223


Q ss_pred             eccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccC--------cceeEEEEe---e-cCCceeeeeeec
Q psy6859          43 RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDF--------TPLTVECIH---Y-LGDAIPTAAVSD  110 (261)
Q Consensus        43 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--------~~~~~~~~~---~-~~~~~~~~~~s~  110 (261)
                      +...++|++++.+.=| +++.|..+|.+.|.|++....+..-....        .....+.|.   . +..+-..+++.|
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            3356889999997555 99999999999999997766665533222        111222221   1 222233334556


Q ss_pred             CCCCeEEEEEcCC---CceeeEE-eec-CCcceEEEEE-EeCCC-------------------CceEEEEecCCCeEEEE
Q psy6859         111 QDSSRVHIYDCKG---NDMINMI-KLD-FTPLTVECIH-YLGDA-------------------IPTAAVSDQDSSHVHIY  165 (261)
Q Consensus       111 ~~d~~i~i~d~~~---~~~~~~~-~~~-~~~~~~~~~~-~~~~~-------------------~~~~~~~~~~d~~i~i~  165 (261)
                      +..|.+.+|.+.-   +.....+ ... .....+..+. ++.+.                   ...+++..+ +..++++
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~irv~  240 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDIRVF  240 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccceEEE
Confidence            7889999997651   1111111 111 1233444443 22221                   011233433 7789999


Q ss_pred             EccCCCccceeeccCcccCeEEEEEc-----CCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC---
Q psy6859         166 DCKGNGTPLHVLDRLHTKPVVLIKFN-----PIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK---  237 (261)
Q Consensus       166 d~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---  237 (261)
                      ... +.+...... ........+.+-     ..+..|++-..+|.+++|.+..               -+.+....-   
T Consensus       241 ~~~-~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~---------------Lkei~~~~l~~~  303 (395)
T PF08596_consen  241 KPP-KSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS---------------LKEIKSVSLPPP  303 (395)
T ss_dssp             -TT----EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-----------------EEEEEE-SS-
T ss_pred             eCC-CCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC---------------chHhhcccCCCc
Confidence            987 555544442 222223334442     3456788888999999999853               233322222   


Q ss_pred             -CccceeeeeECCCCceEEEee
Q psy6859         238 -NKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       238 -~~~~v~~~~~s~~~~~l~s~~  258 (261)
                       ....+....++++|..++-.|
T Consensus       304 ~d~~~~~~ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  304 LDSRRLSSSSISRNGDIFYWTG  325 (395)
T ss_dssp             --HHHHTT-EE-TTS-EEEE-S
T ss_pred             cccccccccEECCCCCEEEEeC
Confidence             233455677788888765443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114|consensus

Probab=98.67  E-value=4.8e-06  Score=68.32  Aligned_cols=188  Identities=11%  Similarity=0.107  Sum_probs=114.9

Q ss_pred             EEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcc-eeEEEEeecCCceeeeeeecCCCC-eEEEEEcCCC---c--
Q psy6859          53 CTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTP-LTVECIHYLGDAIPTAAVSDQDSS-RVHIYDCKGN---D--  125 (261)
Q Consensus        53 ~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~d~-~i~i~d~~~~---~--  125 (261)
                      +|++.+..++.|+.+|.|.+.+- ..+.+..++...+. +...........+++++-....+- .+++||++.-   +  
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            46788889999999999988873 44555666654444 333333333345555522211122 6999998743   1  


Q ss_pred             -ee---eEEe--ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC--CCccceeeccCcccCeEEEEEcCCCCE-
Q psy6859         126 -MI---NMIK--LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG--NGTPLHVLDRLHTKPVVLIKFNPIYQV-  196 (261)
Q Consensus       126 -~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~-  196 (261)
                       ++   +.+.  .+..+.++.+++.+.+-..  +++|-.+|.|..+.-.-  .......+......+|+.+++..+++. 
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~--Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKT--IVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccE--EEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence             22   1112  2223556778888888654  88999999999985321  111122222245789999999999886 


Q ss_pred             EEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         197 VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       197 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      +.++. -..|.+|.+..             ++ .....+..|..++++..|++....+++++
T Consensus       187 lFv~T-t~~V~~y~l~g-------------r~-p~~~~ld~~G~~lnCss~~~~t~qfIca~  233 (933)
T KOG2114|consen  187 LFVAT-TEQVMLYSLSG-------------RT-PSLKVLDNNGISLNCSSFSDGTYQFICAG  233 (933)
T ss_pred             EEEEe-cceeEEEEecC-------------CC-cceeeeccCCccceeeecCCCCccEEEec
Confidence            33333 44699999863             22 22444667888888888887655344444

>KOG1008|consensus

Probab=98.66  E-value=2.1e-08  Score=79.01  Aligned_cols=199  Identities=13%  Similarity=0.130  Sum_probs=121.3

Q ss_pred             CCeEEEEEcC--C-CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEe----CCCcEEEEEc
Q psy6859           4 SPITHVVVTK--T-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVA----SDKAMKVFDV   75 (261)
Q Consensus         4 ~~v~~~~~~~--~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~----~dg~v~~wd~   75 (261)
                      ..+.|++++-  + .+++.|..+|.|-+-........-.....+|..++++++|++ |.+.||+|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            3466777764  2 478899999999998876532222334456788999999998 566677653    3567999999


Q ss_pred             ccc--ceeeeeeccC---cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCC
Q psy6859          76 INF--DMINMIKLDF---TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAI  149 (261)
Q Consensus        76 ~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  149 (261)
                      .++  .+........   .....+++..+.+.+.++    ...+.++++|++.. .....+..    ..+..+...|-..
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaG----m~sr~~~ifdlRqs~~~~~svnT----k~vqG~tVdp~~~  208 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAG----MTSRSVHIFDLRQSLDSVSSVNT----KYVQGITVDPFSP  208 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcc----cccchhhhhhhhhhhhhhhhhhh----hhcccceecCCCC
Confidence            876  2222221111   111233333444444443    67789999999843 22222222    1344555556222


Q ss_pred             ceEEEEecCCCeEEEEE-ccCCCccceeeccCcc----cCeEEEEEcCCCC-EEEEEc-CCCeEEEeeccc
Q psy6859         150 PTAAVSDQDSSHVHIYD-CKGNGTPLHVLDRLHT----KPVVLIKFNPIYQ-VVVSVD-KAGILEYWSGYK  213 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d-~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~  213 (261)
                      .  .++...|+.|.+|| .++-..++..+. ..+    ..+..++|+|... .+++.+ ..++|+++|+..
T Consensus       209 n--Y~cs~~dg~iAiwD~~rnienpl~~i~-~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  209 N--YFCSNSDGDIAIWDTYRNIENPLQIIL-RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             C--ceeccccCceeeccchhhhccHHHHHh-hCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            1  33445599999999 553445666553 222    2489999999765 455555 557899999864

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.62  E-value=9.3e-06  Score=65.58  Aligned_cols=170  Identities=10%  Similarity=0.069  Sum_probs=103.7

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC----CcEEEEEccccceeeeeeccCcceeEEEEeec
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD----KAMKVFDVINFDMINMIKLDFTPLTVECIHYL   99 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~   99 (261)
                      +.+.+.|.++.  +...++.- .+....+.++++++++++.+.+    .++...+..+...+..+....    ...+..+
T Consensus       215 ~~vSvID~etm--eV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~----iea~vkd  287 (635)
T PRK02888        215 SLFTAVDAETM--EVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR----IEEAVKA  287 (635)
T ss_pred             EEEEEEECccc--eEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH----HHHhhhC
Confidence            44555565554  44444432 2244677888999988887632    233333332222222222111    0112224


Q ss_pred             CCceeeeeeecCCCCeEEEEEcCC-----CceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc-
Q psy6859         100 GDAIPTAAVSDQDSSRVHIYDCKG-----NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP-  173 (261)
Q Consensus       100 ~~~~~~~~~s~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-  173 (261)
                      ++... +     .++.|.+.|.++     .+.+..+...   .....+.++||+.+ +++++..+.++.++|+. +.+. 
T Consensus       288 GK~~~-V-----~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGky-lyVanklS~tVSVIDv~-k~k~~  356 (635)
T PRK02888        288 GKFKT-I-----GGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKY-FIANGKLSPTVTVIDVR-KLDDL  356 (635)
T ss_pred             CCEEE-E-----CCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCE-EEEeCCCCCcEEEEECh-hhhhh
Confidence            44332 2     367899999988     4555556543   35588999999997 46777789999999998 5332 


Q ss_pred             -----------ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         174 -----------LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       174 -----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                                 +.+.+  -.......+|+++|....+-.-|..|..|++..
T Consensus       357 ~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        357 FDGKIKPRDAVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhccCCccceEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                       33332  233345678999998778888899999999865

>KOG3617|consensus

Probab=98.60  E-value=8.1e-06  Score=67.24  Aligned_cols=69  Identities=14%  Similarity=0.104  Sum_probs=60.1

Q ss_pred             eEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859           6 ITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         6 v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~   76 (261)
                      +++++|+| .-.|+.|-.-|.+.+|...+.  +.......|+.+|..+.|+++|..++++..-|.+.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~--e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT--ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCc--eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            56789999 668899999999999998875  4555556799999999999999999999999999999876

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.60  E-value=0.00016  Score=57.43  Aligned_cols=102  Identities=16%  Similarity=0.174  Sum_probs=69.0

Q ss_pred             EEEEEeCCCCceEEEE---ecCCCe----EEEEEccCCCcc----ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy6859         140 ECIHYLGDAIPTAAVS---DQDSSH----VHIYDCKGNGTP----LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEY  208 (261)
Q Consensus       140 ~~~~~~~~~~~~~~~~---~~~d~~----i~i~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  208 (261)
                      .++.|+-...+.+...   .+.+|.    -.+|++. ..+.    +..+  ..++.+.+++++|+.+.|+.|+.||+|.+
T Consensus       209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~-r~klqrvsvtsi--pL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECS-RNKLQRVSVTSI--PLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEee-cCceeEEEEEEE--ecCCcceEEecCcccceEEEEecCCeEEE
Confidence            5666765444333322   222333    3466665 3322    2233  57889999999999999999999999999


Q ss_pred             eecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         209 WSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ||...                 .+..+....-.++.++|+|+|..+++|+.-|
T Consensus       286 yD~~~-----------------~~t~~~ka~~~P~~iaWHp~gai~~V~s~qG  321 (545)
T PF11768_consen  286 YDTTR-----------------GVTLLAKAEFIPTLIAWHPDGAIFVVGSEQG  321 (545)
T ss_pred             EEcCC-----------------CeeeeeeecccceEEEEcCCCcEEEEEcCCc
Confidence            99843                 1222333455678999999999999998754

>KOG1275|consensus

Probab=98.58  E-value=3e-06  Score=70.00  Aligned_cols=178  Identities=11%  Similarity=0.135  Sum_probs=119.3

Q ss_pred             CCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc
Q psy6859          58 GTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL  137 (261)
Q Consensus        58 ~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~  137 (261)
                      +..++.|+....+..+|+++.+..+........  +..+..+++.+.++    ...|+|.+-|.++.+.++++..+  ..
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR~Nnr~lf~G----~t~G~V~LrD~~s~~~iht~~aH--s~  218 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMRYNNRNLFCG----DTRGTVFLRDPNSFETIHTFDAH--SG  218 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCc--eEEEEecCcEEEee----cccceEEeecCCcCceeeeeecc--cc
Confidence            346677777778888999988887776655433  33344445555444    89999999999999999999875  44


Q ss_pred             eEEEEEEeCCCCceEEEEecC---------CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEE
Q psy6859         138 TVECIHYLGDAIPTAAVSDQD---------SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILE  207 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~  207 (261)
                      .+..+...++-    +++++.         |..|++||+| .-+.+..+. -+.. ..-+.|.|.-. .+++++..|...
T Consensus       219 siSDfDv~GNl----LitCG~S~R~~~l~~D~FvkVYDLR-mmral~PI~-~~~~-P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  219 SISDFDVQGNL----LITCGYSMRRYNLAMDPFVKVYDLR-MMRALSPIQ-FPYG-PQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             ceeeeeccCCe----EEEeecccccccccccchhhhhhhh-hhhccCCcc-cccC-chhhhhcccccceEEEEeccccee
Confidence            56666555443    555443         6678999999 666555553 2333 25578888654 678888899999


Q ss_pred             EeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         208 YWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       208 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +-|..+-.           +....++........+..+.+|++|+.||.+..+|
T Consensus       292 ~vd~~~ls-----------NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g  334 (1118)
T KOG1275|consen  292 FVDTATLS-----------NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEG  334 (1118)
T ss_pred             eccccccC-----------CCccceeEEccCCCcceeEEecCCCceEEEecccC
Confidence            98843200           00111222233445589999999999999987765

>KOG2066|consensus

Probab=98.58  E-value=6.9e-06  Score=66.93  Aligned_cols=145  Identities=13%  Similarity=0.113  Sum_probs=101.9

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce
Q psy6859          47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM  126 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~  126 (261)
                      ..+.+++++  ++.++-|..+|.|++++.. +.....+. +...      ...|.+++++    +.||+|.|-.+-+.+.
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~~~~~~-~s~~------~~~Gey~asC----S~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNPKTNFD-HSSS------ILEGEYVASC----SDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecC-Cccccccc-cccc------ccCCceEEEe----cCCCcEEEeeccCCcc
Confidence            456666665  4589999999999999974 33322221 1111      4467777777    9999999999988877


Q ss_pred             eeEEeecCCcceEEEEEEeCCCC---ceEEEEecCCCeEEEEEccCCCccce-eeccCcccCeEEEEEcCCCCEEEEEcC
Q psy6859         127 INMIKLDFTPLTVECIHYLGDAI---PTAAVSDQDSSHVHIYDCKGNGTPLH-VLDRLHTKPVVLIKFNPIYQVVVSVDK  202 (261)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~  202 (261)
                      ...+..+.   .+.+++++|+..   ..-+++|+..| +.++.-+.-+.... .+. ...++|.++.|.  |.++|-++.
T Consensus       106 ~~~~df~r---piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  106 ITQYDFKR---PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             ceeEecCC---cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-cCccceEEEEec--CcEEEEecC
Confidence            77776543   567888888821   11278888788 88887652232222 243 568899999995  778999988


Q ss_pred             CCeEEEeeccc
Q psy6859         203 AGILEYWSGYK  213 (261)
Q Consensus       203 dg~i~iwd~~~  213 (261)
                      +| |++||+..
T Consensus       179 ~G-v~vyd~~~  188 (846)
T KOG2066|consen  179 DG-VKVYDTPT  188 (846)
T ss_pred             CC-cEEEeccc
Confidence            88 99999865

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.54  E-value=7.7e-05  Score=58.94  Aligned_cols=181  Identities=8%  Similarity=0.008  Sum_probs=99.4

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeecccccee-EEEEee--CCCEEEEEeCCCcEEEEEccccceeeeeeccCcce
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIH-SICTNY--NGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPL   91 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~-~~~~~~--~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~   91 (261)
                      ..++.+..++.+.-+|.+++  +.+..+......+. ...-+|  .+..++.++.+|.+..+|..+|+.+..........
T Consensus       161 ~~v~v~~~~g~l~ald~~tG--~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~  238 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDG--AVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG  238 (394)
T ss_pred             CEEEEECCCCEEEEEEccCC--CEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCC
Confidence            44555666777777777665  34433321110000 000011  12356667788899999999888766544221100


Q ss_pred             -------eEEEEe--ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeE
Q psy6859          92 -------TVECIH--YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV  162 (261)
Q Consensus        92 -------~~~~~~--~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  162 (261)
                             ......  ..++.++..    +.++.+..+|+.+++.+-......    ...+....+.    ++.++.++.+
T Consensus       239 ~~~~~~~~~~~~sP~v~~~~vy~~----~~~g~l~ald~~tG~~~W~~~~~~----~~~~~~~~~~----vy~~~~~g~l  306 (394)
T PRK11138        239 ATEIDRLVDVDTTPVVVGGVVYAL----AYNGNLVALDLRSGQIVWKREYGS----VNDFAVDGGR----IYLVDQNDRV  306 (394)
T ss_pred             ccchhcccccCCCcEEECCEEEEE----EcCCeEEEEECCCCCEEEeecCCC----ccCcEEECCE----EEEEcCCCeE
Confidence                   000000  123444444    678999999999987665443221    1112222222    5555679999


Q ss_pred             EEEEccCCCccceeeccCcc-cCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         163 HIYDCKGNGTPLHVLDRLHT-KPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       163 ~i~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ..+|.. +++.+.... ... ....+...  .+.+|+.++.+|.+...|..+
T Consensus       307 ~ald~~-tG~~~W~~~-~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t  354 (394)
T PRK11138        307 YALDTR-GGVELWSQS-DLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRED  354 (394)
T ss_pred             EEEECC-CCcEEEccc-ccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence            999998 887665443 111 11222222  245678888999999999854

>KOG2314|consensus

Probab=98.54  E-value=1e-05  Score=63.38  Aligned_cols=184  Identities=10%  Similarity=0.067  Sum_probs=116.6

Q ss_pred             eEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeec-------CCCCeEEEEEcC
Q psy6859          50 HSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD-------QDSSRVHIYDCK  122 (261)
Q Consensus        50 ~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------~~d~~i~i~d~~  122 (261)
                      +-+.|||-|.||+|--..| |.+|--.+...++.+..  ..+....++|..+++.+.....       .....+.|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~H--p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYH--PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccC--CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            5689999999999977665 78998776666666543  2356677788877776652221       123679999999


Q ss_pred             CCceeeEEeecCCcceE-EEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc
Q psy6859         123 GNDMINMIKLDFTPLTV-ECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD  201 (261)
Q Consensus       123 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  201 (261)
                      +|...+.+.....+... .-+.|+.|..+  ++.-. ...|.||+.. ...++..-. ..-..|....|+|.+++||--.
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy--~Arm~-~~sisIyEtp-sf~lld~Ks-lki~gIr~FswsP~~~llAYwt  365 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKY--FARMT-GNSISIYETP-SFMLLDKKS-LKISGIRDFSWSPTSNLLAYWT  365 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCce--eEEec-cceEEEEecC-ceeeecccc-cCCccccCcccCCCcceEEEEc
Confidence            99988888763333222 24678888886  33322 3789999986 433332221 2345688889999988776544


Q ss_pred             CC-----CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEE
Q psy6859         202 KA-----GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       202 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  256 (261)
                      ..     ..+.+-.+               .+.+.+++-.-|.-.=..+.|-.+|.+|+.
T Consensus       366 pe~~~~parvtL~ev---------------Ps~~~iRt~nlfnVsDckLhWQk~gdyLcv  410 (698)
T KOG2314|consen  366 PETNNIPARVTLMEV---------------PSKREIRTKNLFNVSDCKLHWQKSGDYLCV  410 (698)
T ss_pred             ccccCCcceEEEEec---------------CccceeeeccceeeeccEEEeccCCcEEEE
Confidence            21     12333333               234444444444433345778888888764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.53  E-value=2.8e-05  Score=61.50  Aligned_cols=143  Identities=19%  Similarity=0.214  Sum_probs=75.7

Q ss_pred             cccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC
Q psy6859          45 HLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN  124 (261)
Q Consensus        45 ~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~  124 (261)
                      ..-....+.++|++++++. +.||...++.....+....    ......++. . .+.++..    ..++.|.++.--+.
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----G~g~~~vw~-~-~n~yAv~----~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----GSGLSFVWS-S-RNRYAVL----ESSSTIKIYKNFKN   99 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----EE-SEEEE--T-SSEEEEE-----TTS-EEEEETTEE
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc----CceeEEEEe-c-CccEEEE----ECCCeEEEEEcCcc
Confidence            3445789999999998888 5677778887433322221    112223333 3 3445555    56888999743333


Q ss_pred             ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC
Q psy6859         125 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG  204 (261)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  204 (261)
                      +....++...   .+..+-.   |. + +...+ ++.|.+||+. +++.+++++  .. +|..+.|++++++++..+.+ 
T Consensus       100 ~~~k~i~~~~---~~~~If~---G~-L-L~~~~-~~~i~~yDw~-~~~~i~~i~--v~-~vk~V~Ws~~g~~val~t~~-  165 (443)
T PF04053_consen  100 EVVKSIKLPF---SVEKIFG---GN-L-LGVKS-SDFICFYDWE-TGKLIRRID--VS-AVKYVIWSDDGELVALVTKD-  165 (443)
T ss_dssp             -TT-----SS----EEEEE----SS-S-EEEEE-TTEEEEE-TT-T--EEEEES--S--E-EEEEE-TTSSEEEEE-S--
T ss_pred             ccceEEcCCc---ccceEEc---Cc-E-EEEEC-CCCEEEEEhh-HcceeeEEe--cC-CCcEEEEECCCCEEEEEeCC-
Confidence            3333444432   2333333   43 2 33333 4589999999 899999995  33 38999999999999988866 


Q ss_pred             eEEEeecc
Q psy6859         205 ILEYWSGY  212 (261)
Q Consensus       205 ~i~iwd~~  212 (261)
                      .+.+++..
T Consensus       166 ~i~il~~~  173 (443)
T PF04053_consen  166 SIYILKYN  173 (443)
T ss_dssp             SEEEEEE-
T ss_pred             eEEEEEec
Confidence            47777754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.53  E-value=0.00012  Score=52.83  Aligned_cols=166  Identities=6%  Similarity=-0.010  Sum_probs=99.1

Q ss_pred             EEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeec-------cccceeEEEEeeC------CCEEEEEeCCCcEEE
Q psy6859           7 THVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRS-------HLGVIHSICTNYN------GTLLCTVASDKAMKV   72 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~------~~~l~s~~~dg~v~~   72 (261)
                      +.++||| +..||.+...|+|+++|+...  + +..+..       -..+|..+.|.+.      ...|+.-..+|.++-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~--~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGS--E-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccc--e-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            4689999 889999999999999999864  2 222211       2245777777542      124666678888887


Q ss_pred             EEccc-----cceeeeeecc---CcceeEEEEeecCCceeeeeeecCCC-------CeEEEEEcCCCceeeE--------
Q psy6859          73 FDVIN-----FDMINMIKLD---FTPLTVECIHYLGDAIPTAAVSDQDS-------SRVHIYDCKGNDMINM--------  129 (261)
Q Consensus        73 wd~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~d-------~~i~i~d~~~~~~~~~--------  129 (261)
                      |-+..     .+....+...   ...+....+++..+.++........+       --+.-|.+-++.+-..        
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~  203 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD  203 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence            77532     2334444432   22455555555544444331111111       1344554433221100        


Q ss_pred             -------------Ee------ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec
Q psy6859         130 -------------IK------LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       130 -------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  178 (261)
                                   +.      .......|..|..+|++..  +++...+|.|.+|++. .-+..+.+.
T Consensus       204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~--La~ih~sG~lsLW~iP-sL~~~~~W~  268 (282)
T PF15492_consen  204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSL--LACIHFSGSLSLWEIP-SLRLQRSWK  268 (282)
T ss_pred             ccccccccceeeccceeeeeccccCCCceEEEEECCCCCE--EEEEEcCCeEEEEecC-cchhhcccc
Confidence                         00      0123457889999999975  7888889999999998 766666664

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.53  E-value=0.00014  Score=53.47  Aligned_cols=183  Identities=11%  Similarity=0.101  Sum_probs=113.0

Q ss_pred             eEEEEEc-CCCeEEEecCCCeEEEEeccCCceeeeEEee--c-cccceeEEEEeeCCCEEEEEeCC--------CcEEEE
Q psy6859           6 ITHVVVT-KTDFVITASNDGHIKFWKKQEEGIEFVKHFR--S-HLGVIHSICTNYNGTLLCTVASD--------KAMKVF   73 (261)
Q Consensus         6 v~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~s~~~d--------g~v~~w   73 (261)
                      ...+++. ++..++.+...+. .++|..++..+.+....  . .....+.+++.++|++.++....        |.+..+
T Consensus        42 ~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~  120 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI  120 (246)
T ss_dssp             EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred             CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence            4566777 5555555555444 45588877545454442  1 33567899999999977776543        446666


Q ss_pred             EccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce-e---eEE-eecCCcceEEEEEEeCCC
Q psy6859          74 DVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM-I---NMI-KLDFTPLTVECIHYLGDA  148 (261)
Q Consensus        74 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~  148 (261)
                      +.. ++...... .......+.++++++.++..   -+..+.|..+++..... +   ..+ ...........+++..++
T Consensus       121 ~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~---ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  121 DPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVA---DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             ETT-SEEEEEEE-EESSEEEEEEETTSSEEEEE---ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             CCC-CeEEEEec-CcccccceEECCcchheeec---ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence            665 44333222 23334567888888766533   36788899999864322 1   222 222222357889999998


Q ss_pred             CceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc-CCCCEEEE
Q psy6859         149 IPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN-PIYQVVVS  199 (261)
Q Consensus       149 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~  199 (261)
                      .  +.++....+.|.++|.+  ++.+..+. .....+++++|. |+.+.|+.
T Consensus       196 ~--l~va~~~~~~I~~~~p~--G~~~~~i~-~p~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  196 N--LWVADWGGGRIVVFDPD--GKLLREIE-LPVPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             ---EEEEEETTTEEEEEETT--SCEEEEEE--SSSSEEEEEEESTTSSEEEE
T ss_pred             C--EEEEEcCCCEEEEECCC--ccEEEEEc-CCCCCEEEEEEECCCCCEEEE
Confidence            6  35565568999999974  77888886 444589999994 66665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.52  E-value=8.8e-05  Score=58.63  Aligned_cols=187  Identities=12%  Similarity=0.083  Sum_probs=109.5

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccc--c--------cee-EEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL--G--------VIH-SICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~--~--------~v~-~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      +..+++++.++.+.-+|.+++  +.+.......  .        .+. .+..  ++..++.++.+|.+.-+|..+|+.+.
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W  144 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTG--KEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAW  144 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCC--cEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence            567788888899999998877  4443332111  0        000 1111  34467778889999999999999888


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceE---EEEEEeCCCCceEEEEecCC
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTV---ECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d  159 (261)
                      +.+........-.+  .+..++..    +.++.+.-+|.++++.+-...........   ..-....+.    ++.++.+
T Consensus       145 ~~~~~~~~~ssP~v--~~~~v~v~----~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~----v~~~~~~  214 (394)
T PRK11138        145 QTKVAGEALSRPVV--SDGLVLVH----TSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGG----AIVGGDN  214 (394)
T ss_pred             cccCCCceecCCEE--ECCEEEEE----CCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCE----EEEEcCC
Confidence            77654332111111  23444443    67899999999999887766543111000   001111221    4556678


Q ss_pred             CeEEEEEccCCCccceeeccCcc---c---CeEEEEEcC--CCCEEEEEcCCCeEEEeeccccc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHT---K---PVVLIKFNP--IYQVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~---~---~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~  215 (261)
                      +.+..+|.. +++.+...+....   .   ....+.-+|  .+..++.++.+|.+..+|+.+++
T Consensus       215 g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~  277 (394)
T PRK11138        215 GRVSAVLME-QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ  277 (394)
T ss_pred             CEEEEEEcc-CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence            999999998 8877665531100   0   011111222  24456667778899989887653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.43  E-value=1.8e-05  Score=62.36  Aligned_cols=161  Identities=13%  Similarity=0.051  Sum_probs=95.5

Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      +.....+.........-.+.+++..++...+.......+.++|+.+++....+....   .-..-+|+||+..+ +++..
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g---~~~~P~fspDG~~l-~f~~~  257 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG---NNGAPAFSPDGSKL-AFSSS  257 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC---ccCCccCCCCCCEE-EEEEC
Confidence            433344443344444456667777777665654343679999999987666665322   33567899999864 55555


Q ss_pred             CCCe--EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEE-EEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859         158 DSSH--VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVV-SVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       158 ~d~~--i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                      .||.  |+++|+. ... +..+. ...+.-+.-.|+|||++|+ +.+..|.-.||-+..             . +.....
T Consensus       258 rdg~~~iy~~dl~-~~~-~~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~-------------~-g~~~~r  320 (425)
T COG0823         258 RDGSPDIYLMDLD-GKN-LPRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL-------------E-GSQVTR  320 (425)
T ss_pred             CCCCccEEEEcCC-CCc-ceecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECC-------------C-CCceeE
Confidence            5666  5666765 433 44454 3333334668999999775 445666655554321             1 222222


Q ss_pred             cCCCccceeeeeECCCCceEEEeec
Q psy6859         235 FAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       235 ~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      +......-..-.|||||++|+..+.
T Consensus       321 iT~~~~~~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         321 LTFSGGGNSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             eeccCCCCcCccCCCCCCEEEEEec
Confidence            3222222227789999999987763

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.41  E-value=0.00051  Score=54.39  Aligned_cols=168  Identities=13%  Similarity=0.146  Sum_probs=86.1

Q ss_pred             eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCc----ce-eE--EEEe
Q psy6859          25 HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFT----PL-TV--ECIH   97 (261)
Q Consensus        25 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~----~~-~~--~~~~   97 (261)
                      .|+||+....   ++..+.-..+.|.++.|+.+. .|+....||.++++|+. |+.  .+.....    .+ .+  ....
T Consensus        62 ~I~iys~sG~---ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~  134 (410)
T PF04841_consen   62 SIQIYSSSGK---LLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIW  134 (410)
T ss_pred             EEEEECCCCC---EeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccc
Confidence            4888877653   444443333789999998865 56666799999999985 443  2221111    11 11  0111


Q ss_pred             ecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEE-eecC-----Ccc-eEEE-EEEeCCCCceEEEEecCCCeEEEEEcc
Q psy6859          98 YLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMI-KLDF-----TPL-TVEC-IHYLGDAIPTAAVSDQDSSHVHIYDCK  168 (261)
Q Consensus        98 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~-~~~~-----~~~-~~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~  168 (261)
                      ..+..++.+    ..++.+.+.+-.... ....+ ....     +.. .... ..++.+...  .+....++.+.+.+-.
T Consensus       135 ~~~~GivvL----t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~--~i~~~~g~~i~~i~~~  208 (410)
T PF04841_consen  135 FYKNGIVVL----TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVV--EILLANGETIYIIDEN  208 (410)
T ss_pred             cCCCCEEEE----CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcce--EEEEecCCEEEEEEcc
Confidence            111334444    455555544322221 11111 0000     000 0000 122333322  2222334455544433


Q ss_pred             CCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         169 GNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       169 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                       ..   ..+  ...+++..|+.||++++||.-..+|.+.+...
T Consensus       209 -~~---~~i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss  245 (410)
T PF04841_consen  209 -SF---KQI--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS  245 (410)
T ss_pred             -cc---ccc--cCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence             11   113  23568999999999999999999999888764

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.38  E-value=0.0001  Score=45.70  Aligned_cols=87  Identities=16%  Similarity=0.216  Sum_probs=61.1

Q ss_pred             eEEEEEcC--C---CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           6 ITHVVVTK--T---DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         6 v~~~~~~~--~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      |+++++.+  +   +.|++|+.|..|++|+-+    +.+.++.. .+.|++++-... ..++.+-.+|+|-+|+-  .+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cce
Confidence            77888775  2   589999999999999855    56666663 467888877666 47888999999999985  344


Q ss_pred             eeeeeccCcceeEEEEeecC
Q psy6859          81 INMIKLDFTPLTVECIHYLG  100 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~  100 (261)
                      +...+....+.....+..++
T Consensus        74 lWRiKSK~~~~~~~~~D~~g   93 (111)
T PF14783_consen   74 LWRIKSKNQVTSMAFYDING   93 (111)
T ss_pred             eeeeccCCCeEEEEEEcCCC
Confidence            44445445555555544443

>KOG0882|consensus

Probab=98.36  E-value=2.4e-05  Score=59.79  Aligned_cols=204  Identities=14%  Similarity=0.118  Sum_probs=128.5

Q ss_pred             CCCCeEEEEEcC-CCeEEEecC-CCeEEEEeccCCceeeeEEeeccccceeEEEEeeC-CC-EEE-EEeCCCcEEEEEcc
Q psy6859           2 HRSPITHVVVTK-TDFVITASN-DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN-GT-LLC-TVASDKAMKVFDVI   76 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~-~l~-s~~~dg~v~~wd~~   76 (261)
                      |...|.+++.+- +.++.|.+. |..++++|+++-.......+.--.+.+..+ .++. -. .++ +.-.++.+.++|-.
T Consensus        52 HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~  130 (558)
T KOG0882|consen   52 HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGF  130 (558)
T ss_pred             HHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCc
Confidence            344555666666 667888777 999999999875322122222222222211 1221 11 233 33367889999965


Q ss_pred             cc--ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC------CceeeEEe-------ecCCcceEEE
Q psy6859          77 NF--DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG------NDMINMIK-------LDFTPLTVEC  141 (261)
Q Consensus        77 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~------~~~~~~~~-------~~~~~~~~~~  141 (261)
                      ..  +....-+.+..|+....+.+.++...+.    ...|.|.-|....      .+....++       .........+
T Consensus       131 ~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi----D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts  206 (558)
T KOG0882|consen  131 GDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI----DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS  206 (558)
T ss_pred             CCcCccceecccccCceEEEEeeccccceeec----cccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence            33  3333445778888888888888777666    7789999999873      11111111       1111224578


Q ss_pred             EEEeCCCCceEEEEecCCCeEEEEEccCCCccceeecc-------------------------------Ccc-cCeEEEE
Q psy6859         142 IHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR-------------------------------LHT-KPVVLIK  189 (261)
Q Consensus       142 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------------------~~~-~~v~~~~  189 (261)
                      +.|+|++..  +.+-..|..|++++.+ +++.++.++.                               .|. ..-+.+.
T Consensus       207 ~Efsp~g~q--istl~~DrkVR~F~~K-tGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~  283 (558)
T KOG0882|consen  207 FEFSPDGAQ--ISTLNPDRKVRGFVFK-TGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV  283 (558)
T ss_pred             eEEccccCc--ccccCcccEEEEEEec-cchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeE
Confidence            999999986  6666789999999998 8877666530                               000 1124567


Q ss_pred             EcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         190 FNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       190 ~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      |...+++|+-++-=| |++.++.++
T Consensus       284 fdes~~flly~t~~g-ikvin~~tn  307 (558)
T KOG0882|consen  284 FDESGNFLLYGTILG-IKVINLDTN  307 (558)
T ss_pred             EcCCCCEEEeeccee-EEEEEeecC
Confidence            888899999888777 899998765

>KOG1645|consensus

Probab=98.35  E-value=2.7e-05  Score=58.71  Aligned_cols=152  Identities=11%  Similarity=0.056  Sum_probs=90.3

Q ss_pred             eeEEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859          38 FVKHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRV  116 (261)
Q Consensus        38 ~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i  116 (261)
                      ....+.+|...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ .+...+++..+....+.+   |..+|.|
T Consensus       185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa---Gl~nG~V  260 (463)
T KOG1645|consen  185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA---GLQNGMV  260 (463)
T ss_pred             hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE---eccCceE
Confidence            3445566778899999999766 7888999999999999999888888876 445556665554433332   4889999


Q ss_pred             EEEEcCCCc-eeeEEeecCCcceEEEEEEeCCCCc----eEEEEecCCCeEEEEEccCCC-ccceeeccCcccCeEEEEE
Q psy6859         117 HIYDCKGND-MINMIKLDFTPLTVECIHYLGDAIP----TAAVSDQDSSHVHIYDCKGNG-TPLHVLDRLHTKPVVLIKF  190 (261)
Q Consensus       117 ~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~  190 (261)
                      .+||++..+ ++..+.......++..+++-+....    .+++...  -.+..|.+.... .+...++....+...++.+
T Consensus       261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l--t~l~f~ei~~s~~~~p~vlele~pG~cismqy  338 (463)
T KOG1645|consen  261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL--TVLQFYEIVFSAECLPCVLELEPPGICISMQY  338 (463)
T ss_pred             EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee--hhhhhhhhhccccCCCcccccCCCcceeeeee
Confidence            999999654 3333333223334455444332210    1122222  235566654222 2222222133455556666


Q ss_pred             cCCCC
Q psy6859         191 NPIYQ  195 (261)
Q Consensus       191 ~~~~~  195 (261)
                      .+-.+
T Consensus       339 ~~~sn  343 (463)
T KOG1645|consen  339 HGVSN  343 (463)
T ss_pred             cCccc
Confidence            65444

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.33  E-value=3.9e-05  Score=64.25  Aligned_cols=147  Identities=10%  Similarity=0.036  Sum_probs=97.6

Q ss_pred             CEEEEE-eCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCc---eeeeeeecCCCCeEEEEEcCCCc--eeeE-Ee
Q psy6859          59 TLLCTV-ASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDA---IPTAAVSDQDSSRVHIYDCKGND--MINM-IK  131 (261)
Q Consensus        59 ~~l~s~-~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~d~~i~i~d~~~~~--~~~~-~~  131 (261)
                      ++|+.- .....|+-.|+..|+.+..+..+.... +..+.++.+.   -.--.+.|-.++.+..||+|-..  ++.. ..
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcc-eeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            344443 345789999999999999998766432 4444443110   00011223478899999998542  2211 11


Q ss_pred             ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         132 LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      .........|++-..+|.   ++.|+.+|.||+||-- ..+....++ +...+|..|..+.||++|++.+ +..|.+++.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~---iavgs~~G~IRLyd~~-g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGY---IAVGSNKGDIRLYDRL-GKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCce---EEEEeCCCcEEeeccc-chhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            112334678888888986   8999999999999954 333444554 7789999999999999987766 456778876


Q ss_pred             c
Q psy6859         212 Y  212 (261)
Q Consensus       212 ~  212 (261)
                      .
T Consensus       647 ~  647 (794)
T PF08553_consen  647 L  647 (794)
T ss_pred             e
Confidence            4

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.29  E-value=0.00084  Score=51.56  Aligned_cols=175  Identities=12%  Similarity=0.174  Sum_probs=102.9

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEe---eC----CCEEEEEeC----------CCcEEEEEcccc-----c--
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTN---YN----GTLLCTVAS----------DKAMKVFDVINF-----D--   79 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~---~~----~~~l~s~~~----------dg~v~~wd~~~~-----~--   79 (261)
                      ..|++.|..+........+... ..+.+++..   .+    ..+++.|..          .|.+.++++.+.     +  
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            4677888776532222333322 334444432   22    457776653          288999999874     2  


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      .+......   ..+.++..-++.++++     .++.|.+|++...+ ....-..+ .+..+.++....+.    ++.|..
T Consensus        81 ~i~~~~~~---g~V~ai~~~~~~lv~~-----~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~~~~----I~vgD~  147 (321)
T PF03178_consen   81 LIHSTEVK---GPVTAICSFNGRLVVA-----VGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVFKNY----ILVGDA  147 (321)
T ss_dssp             EEEEEEES---S-EEEEEEETTEEEEE-----ETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEETTE----EEEEES
T ss_pred             EEEEEeec---CcceEhhhhCCEEEEe-----ecCEEEEEEccCcccchhhheec-ceEEEEEEeccccE----EEEEEc
Confidence            22222232   2233333334554443     57999999999887 44443333 34477777777663    677777


Q ss_pred             CCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         159 SSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      ...+.++..+.....+..+. ......++++.|-++++.++.++.+|.+.++...
T Consensus       148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            77888886652233333332 1345668889888777789999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.29  E-value=0.00079  Score=53.53  Aligned_cols=174  Identities=16%  Similarity=0.222  Sum_probs=91.5

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM   83 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~   83 (261)
                      ....+.++| ++.++. ..||.-.|+.....  +...     .+.-..++|.+.+ .+|+-...++|.++.--+.+....
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~--r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAW--RNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTT--EEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT--
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCC--cccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceE
Confidence            356889999 776666 66788888874432  2221     2445678898855 566667788999974334444445


Q ss_pred             eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEE
Q psy6859          84 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVH  163 (261)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  163 (261)
                      ++.+..   +-.+.. |..+..     ..++.|.+||+.+++.+..+...    .+..+.|++++....++  + +..+.
T Consensus       105 i~~~~~---~~~If~-G~LL~~-----~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~--t-~~~i~  168 (443)
T PF04053_consen  105 IKLPFS---VEKIFG-GNLLGV-----KSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALV--T-KDSIY  168 (443)
T ss_dssp             ---SS----EEEEE--SSSEEE-----EETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE----S-SEE
T ss_pred             EcCCcc---cceEEc-CcEEEE-----ECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEE--e-CCeEE
Confidence            554432   222333 544433     35668999999999999988753    47899999998863333  3 55788


Q ss_pred             EEEccCCC-----------ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy6859         164 IYDCKGNG-----------TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEY  208 (261)
Q Consensus       164 i~d~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  208 (261)
                      +++.. ..           ..+..+. .-...|.+.+|..+ -++++.. . .|+.
T Consensus       169 il~~~-~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d-~fiYtT~-~-~lkY  219 (443)
T PF04053_consen  169 ILKYN-LEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED-CFIYTTS-N-HLKY  219 (443)
T ss_dssp             EEEE--HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT-EEEEE-T-T-EEEE
T ss_pred             EEEec-chhcccccccCchhceEEEE-EecceeEEEEEEcC-EEEEEcC-C-eEEE
Confidence            88765 22           0233332 22567888888766 4444443 3 6665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.29  E-value=0.00094  Score=52.00  Aligned_cols=215  Identities=10%  Similarity=0.041  Sum_probs=113.6

Q ss_pred             CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeecc--------------
Q psy6859          22 NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLD--------------   87 (261)
Q Consensus        22 ~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~--------------   87 (261)
                      ..+.+.|+|++++....   +......+....|+|+|+.++-. .++.|.+++..+++..+.-...              
T Consensus        21 ~~~~y~i~d~~~~~~~~---l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye   96 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITP---LTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE   96 (353)
T ss_dssp             EEEEEEEEETTTTEEEE---SS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred             cceeEEEEecCCCceEE---CcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence            34678899998863222   22225678999999999998886 4678999998766443321111              


Q ss_pred             ---CcceeEEEEeecCCceeeeeee------------------------------cCCCC--eEEEEEcCCCceeeEE-e
Q psy6859          88 ---FTPLTVECIHYLGDAIPTAAVS------------------------------DQDSS--RVHIYDCKGNDMINMI-K  131 (261)
Q Consensus        88 ---~~~~~~~~~~~~~~~~~~~~~s------------------------------~~~d~--~i~i~d~~~~~~~~~~-~  131 (261)
                         ......++++|+++.++...+-                              |..+-  .+.++|+.+++....- .
T Consensus        97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~  176 (353)
T PF00930_consen   97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP  176 (353)
T ss_dssp             HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---
T ss_pred             ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec
Confidence               1224567888888877765332                              11222  2345666666543211 1


Q ss_pred             --ecCCcceEEEEEEeCCCCceEEEEecCCCe---EEEEEccCCCccceeeccCcccCe---EEEEEc-CCCC-EEEEEc
Q psy6859         132 --LDFTPLTVECIHYLGDAIPTAAVSDQDSSH---VHIYDCKGNGTPLHVLDRLHTKPV---VLIKFN-PIYQ-VVVSVD  201 (261)
Q Consensus       132 --~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---i~i~d~~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~-~l~~~~  201 (261)
                        .......+..+.|.+++..+++.....+..   +.++|.. ++.....++......|   ....|. +++. +|....
T Consensus       177 ~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~-tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~  255 (353)
T PF00930_consen  177 NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAS-TGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE  255 (353)
T ss_dssp             HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEEC-TTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred             cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECC-CCceeEEEEecCCcceeeecccccccCCCCEEEEEEE
Confidence              122345778899999887444444333332   5566775 4433222221222222   244554 5555 555555


Q ss_pred             CCCeEEEeecccccccCCeeeeeecccccceeecCCCccceee-eeECCCCceEE
Q psy6859         202 KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSG-LSFSPDGNKFV  255 (261)
Q Consensus       202 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~  255 (261)
                      .+|--+||-++.              .+.....+....-.|.. +.|+++++.|.
T Consensus       256 ~~G~~hly~~~~--------------~~~~~~~lT~G~~~V~~i~~~d~~~~~iy  296 (353)
T PF00930_consen  256 RDGYRHLYLYDL--------------DGGKPRQLTSGDWEVTSILGWDEDNNRIY  296 (353)
T ss_dssp             TTSSEEEEEEET--------------TSSEEEESS-SSS-EEEEEEEECTSSEEE
T ss_pred             cCCCcEEEEEcc--------------cccceeccccCceeecccceEcCCCCEEE
Confidence            778666665432              12223344433445533 56677666544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.29  E-value=5e-05  Score=63.66  Aligned_cols=131  Identities=8%  Similarity=0.006  Sum_probs=89.3

Q ss_pred             cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC-----CCceEEEEecCCCeEEEEEccCCCccceeec---cCc
Q psy6859         110 DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD-----AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD---RLH  181 (261)
Q Consensus       110 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~  181 (261)
                      ......|+-.|++.++.+.....+... ++..+.....     ...  .+.|-.++.+..||.|..+..+..-.   -..
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~--tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~  576 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQ--TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS  576 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCc--eEEEECCCceEEeccCCCCCceeecccccccc
Confidence            345688999999999999999876432 3555544311     111  34556688999999995442221111   023


Q ss_pred             ccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         182 TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       182 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      .....+++-+.+| +||+|+.+|.||+||--.               .+....+.+-..+|..|..+.||++|++.+.
T Consensus       577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---------------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---------------KRAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             CCCceEEEecCCc-eEEEEeCCCcEEeecccc---------------hhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            4556777777666 699999999999999421               2233445677899999999999999876553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=98.27  E-value=0.001  Score=51.71  Aligned_cols=198  Identities=11%  Similarity=0.045  Sum_probs=91.8

Q ss_pred             CeEEE-ecCCCeEEEEeccCC--ceeeeEEeec---cc----cceeEEEEeeCCCEEEEEeC--C----CcEEEEEcccc
Q psy6859          15 DFVIT-ASNDGHIKFWKKQEE--GIEFVKHFRS---HL----GVIHSICTNYNGTLLCTVAS--D----KAMKVFDVINF   78 (261)
Q Consensus        15 ~~l~s-~~~d~~i~iw~~~~~--~~~~~~~~~~---~~----~~v~~~~~~~~~~~l~s~~~--d----g~v~~wd~~~~   78 (261)
                      ++|+. |-..+.|.|.|+.+.  ..++.+.+..   +.    ..-..+.--|+|+.++++-.  +    |-+.+.|-++.
T Consensus        88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            35554 447789999999853  2244455542   11    11122333478888887632  2    45778887777


Q ss_pred             ceeeeeeccCc---ceeEEEEeecCCceeeeeee----------------cCCCCeEEEEEcCCCceeeEEeecCCcceE
Q psy6859          79 DMINMIKLDFT---PLTVECIHYLGDAIPTAAVS----------------DQDSSRVHIYDCKGNDMINMIKLDFTPLTV  139 (261)
Q Consensus        79 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s----------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  139 (261)
                      +.....+....   -..-.++.+..+.+++.-+.                +....++++||+.+.+.++++.+.......
T Consensus       168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p  247 (461)
T PF05694_consen  168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP  247 (461)
T ss_dssp             -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred             cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence            76666554322   22334555544433332111                124679999999999999999987655566


Q ss_pred             EEEEEe--CCCCceEEEEecCCCeEEEEEccCCC----ccceeecc----------------CcccCeEEEEEcCCCCEE
Q psy6859         140 ECIHYL--GDAIPTAAVSDQDSSHVHIYDCKGNG----TPLHVLDR----------------LHTKPVVLIKFNPIYQVV  197 (261)
Q Consensus       140 ~~~~~~--~~~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~----------------~~~~~v~~~~~~~~~~~l  197 (261)
                      ..+.|.  |+..+.++-++ -..+|..|--...+    +.+-.+..                .-..-|+.|.+|.|.++|
T Consensus       248 LEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL  326 (461)
T PF05694_consen  248 LEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL  326 (461)
T ss_dssp             EEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred             EEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence            677775  55554433333 34444444331122    12222210                013457999999999998


Q ss_pred             EEE-cCCCeEEEeeccc
Q psy6859         198 VSV-DKAGILEYWSGYK  213 (261)
Q Consensus       198 ~~~-~~dg~i~iwd~~~  213 (261)
                      +.. -.+|.|+.||+..
T Consensus       327 Yvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  327 YVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             EEEETTTTEEEEEE-SS
T ss_pred             EEEcccCCcEEEEecCC
Confidence            554 4899999999965

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.27  E-value=0.00018  Score=56.89  Aligned_cols=195  Identities=11%  Similarity=0.074  Sum_probs=109.2

Q ss_pred             EeeccccceeEEEEeeCCCEEEEEe---CC-CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859          41 HFRSHLGVIHSICTNYNGTLLCTVA---SD-KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRV  116 (261)
Q Consensus        41 ~~~~~~~~v~~~~~~~~~~~l~s~~---~d-g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i  116 (261)
                      .+..-...+..-+|+|+++.++-.+   .. ..+.++++.+++.......... ...-.++|++++++.. ......-.|
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~-~~~P~fspDG~~l~f~-~~rdg~~~i  264 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN-NGAPAFSPDGSKLAFS-SSRDGSPDI  264 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc-cCCccCCCCCCEEEEE-ECCCCCccE
Confidence            3333345566778999888765543   22 3589999998876665553322 3445678888876654 222233456


Q ss_pred             EEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCE
Q psy6859         117 HIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQV  196 (261)
Q Consensus       117 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  196 (261)
                      .++|+.+++..+ +..  ....-..-.|+|++.+.+++ .+..|.-.||-+...+.....+. .....-..-.|+|||++
T Consensus       265 y~~dl~~~~~~~-Lt~--~~gi~~~Ps~spdG~~ivf~-Sdr~G~p~I~~~~~~g~~~~riT-~~~~~~~~p~~SpdG~~  339 (425)
T COG0823         265 YLMDLDGKNLPR-LTN--GFGINTSPSWSPDGSKIVFT-SDRGGRPQIYLYDLEGSQVTRLT-FSGGGNSNPVWSPDGDK  339 (425)
T ss_pred             EEEcCCCCccee-ccc--CCccccCccCCCCCCEEEEE-eCCCCCcceEEECCCCCceeEee-ccCCCCcCccCCCCCCE
Confidence            677888776333 322  22222366788999985444 44566644444432344444443 22222226789999998


Q ss_pred             EEEEcC-CCe--EEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         197 VVSVDK-AGI--LEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       197 l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      |+..+. +|.  |.+.|+.++               ..++.+. .........|.|+|+.+...+
T Consensus       340 i~~~~~~~g~~~i~~~~~~~~---------------~~~~~lt-~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         340 IVFESSSGGQWDIDKNDLASG---------------GKIRILT-STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             EEEEeccCCceeeEEeccCCC---------------CcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence            876663 344  455555332               1122222 223334556777777666543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.22  E-value=0.00085  Score=48.91  Aligned_cols=195  Identities=16%  Similarity=0.260  Sum_probs=100.0

Q ss_pred             EEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEccccceeeeeeccC-cceeEEEEeecCCceeeeeeecCCCCeEE
Q psy6859          40 KHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDVINFDMINMIKLDF-TPLTVECIHYLGDAIPTAAVSDQDSSRVH  117 (261)
Q Consensus        40 ~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~i~  117 (261)
                      +.+.+-...+..|.|+|+.+ ++++....+.|..++. +|+.++.+.... .....+.+..++..+++-    -.++.+.
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~----Er~~~L~   89 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSE----ERDQRLY   89 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEE----TTTTEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEE----cCCCcEE
Confidence            34555556799999999755 5556667788888886 688888877654 223334443334333322    4588899


Q ss_pred             EEEcCCCc------eeeEEeecC---CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC--CCccceeec-------c
Q psy6859         118 IYDCKGND------MINMIKLDF---TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG--NGTPLHVLD-------R  179 (261)
Q Consensus       118 i~d~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~~~~~~~-------~  179 (261)
                      ++++....      ....+....   ....+..++|++....++++  -+..-..+|.++.  ....+....       .
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~--kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~  167 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA--KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK  167 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE--EESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE--eCCCChhhEEEccccCccceeecccccccccc
Confidence            99884321      122233221   23358999999998874443  4455566666652  111111111       0


Q ss_pred             CcccCeEEEEEcCCC-CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec--CC--C-----ccceeeeeECC
Q psy6859         180 LHTKPVVLIKFNPIY-QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF--AK--N-----KTYPSGLSFSP  249 (261)
Q Consensus       180 ~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~-----~~~v~~~~~s~  249 (261)
                      .....+.+++++|.. .+++.......|..+|..                ++.+..+  ..  |     -...-.|+|.+
T Consensus       168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~----------------G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~  231 (248)
T PF06977_consen  168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ----------------GRVVSSLSLDRGFHGLSKDIPQPEGIAFDP  231 (248)
T ss_dssp             --SS---EEEEETTTTEEEEEETTTTEEEEE-TT------------------EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred             ceeccccceEEcCCCCeEEEEECCCCeEEEECCC----------------CCEEEEEEeCCcccCcccccCCccEEEECC
Confidence            233457889999965 466777888899999853                3332222  11  1     13467899999


Q ss_pred             CCceEEEe
Q psy6859         250 DGNKFVTI  257 (261)
Q Consensus       250 ~~~~l~s~  257 (261)
                      +|++.+++
T Consensus       232 ~G~LYIvs  239 (248)
T PF06977_consen  232 DGNLYIVS  239 (248)
T ss_dssp             T--EEEEE
T ss_pred             CCCEEEEc
Confidence            99876654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=0.0014  Score=51.45  Aligned_cols=193  Identities=14%  Similarity=0.169  Sum_probs=131.0

Q ss_pred             EEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC---CCcEEEEEccccceee
Q psy6859           8 HVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS---DKAMKVFDVINFDMIN   82 (261)
Q Consensus         8 ~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~v~~wd~~~~~~~~   82 (261)
                      .+++++ +. .++....++.|.+.|....  .......-- .....++++++++.+..+..   ++++.+.|..+++...
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~--~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATN--TVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCccc--ceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            566777 54 5666666789999997664  333333222 25578999999987777665   6889999998888888


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee-E----EeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN-M----IKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      .......| ....+.+++..++..   ...++.+.+.|........ .    +..   ......+.+++++.+. .+...
T Consensus       155 ~~~vG~~P-~~~a~~p~g~~vyv~---~~~~~~v~vi~~~~~~v~~~~~~~~~~~---~~~P~~i~v~~~g~~~-yV~~~  226 (381)
T COG3391         155 TIPVGNTP-TGVAVDPDGNKVYVT---NSDDNTVSVIDTSGNSVVRGSVGSLVGV---GTGPAGIAVDPDGNRV-YVAND  226 (381)
T ss_pred             EEecCCCc-ceEEECCCCCeEEEE---ecCCCeEEEEeCCCcceecccccccccc---CCCCceEEECCCCCEE-EEEec
Confidence            86655555 677888888877665   1578999999977765553 1    111   1133677888988853 33332


Q ss_pred             CC--CeEEEEEccCCCcccee-eccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeeccc
Q psy6859         158 DS--SHVHIYDCKGNGTPLHV-LDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYK  213 (261)
Q Consensus       158 ~d--~~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  213 (261)
                      .+  +.+...|.. ++..... +..... ....+..+|+|.++.+.. ..+.+.+.|..+
T Consensus       227 ~~~~~~v~~id~~-~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         227 GSGSNNVLKIDTA-TGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             cCCCceEEEEeCC-CceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            23  689999987 6655544 221222 567789999999887764 457888888754

>KOG1008|consensus

Probab=98.22  E-value=3.6e-07  Score=72.40  Aligned_cols=162  Identities=16%  Similarity=0.217  Sum_probs=103.8

Q ss_pred             CCCCCeEEEEEcC-C-CeEEEec----CCCeEEEEeccCC--ceeeeEEeec-cccceeEEEEeeCCCEEEEEeCCCcEE
Q psy6859           1 MHRSPITHVVVTK-T-DFVITAS----NDGHIKFWKKQEE--GIEFVKHFRS-HLGVIHSICTNYNGTLLCTVASDKAMK   71 (261)
Q Consensus         1 gH~~~v~~~~~~~-~-~~l~s~~----~d~~i~iw~~~~~--~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~v~   71 (261)
                      +|..++++++|++ + +.||.|-    .|..+.|||+.+.  .......+.+ ......+++|..+.+.+.+|...+.+.
T Consensus       100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~  179 (783)
T KOG1008|consen  100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH  179 (783)
T ss_pred             cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence            5778899999999 4 5677663    4667999999864  1122222222 334556889998888999999999999


Q ss_pred             EEEcccc-ceeeeeeccCcceeEEEEee-cCCceeeeeeecCCCCeEEEEE-cCCCc-eeeEEee--cCCcceEEEEEEe
Q psy6859          72 VFDVINF-DMINMIKLDFTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYD-CKGND-MINMIKL--DFTPLTVECIHYL  145 (261)
Q Consensus        72 ~wd~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d-~~~~~-~~~~~~~--~~~~~~~~~~~~~  145 (261)
                      ++|++.. .....+.  ........+.| .++++..     ..|+.|.+|| .++-+ ++..+..  ...+..+..++|.
T Consensus       180 ifdlRqs~~~~~svn--Tk~vqG~tVdp~~~nY~cs-----~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc  252 (783)
T KOG1008|consen  180 IFDLRQSLDSVSSVN--TKYVQGITVDPFSPNYFCS-----NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC  252 (783)
T ss_pred             hhhhhhhhhhhhhhh--hhhcccceecCCCCCceec-----cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence            9999732 2222222  11233344444 4455544     4699999999 43322 2222221  2234568899999


Q ss_pred             CCCCceEEEEecCCCeEEEEEccC
Q psy6859         146 GDAIPTAAVSDQDSSHVHIYDCKG  169 (261)
Q Consensus       146 ~~~~~~~~~~~~~d~~i~i~d~~~  169 (261)
                      |....++++..-+.++|++||+..
T Consensus       253 Ptrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  253 PTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cCCcchhhhhccCcceEEEecccc
Confidence            987655455555678899999873

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.21  E-value=0.00031  Score=43.65  Aligned_cols=104  Identities=15%  Similarity=0.174  Sum_probs=63.8

Q ss_pred             eeEEEEee---C-CCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC
Q psy6859          49 IHSICTNY---N-GTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN  124 (261)
Q Consensus        49 v~~~~~~~---~-~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~  124 (261)
                      |++|++..   | .+.|+.|+.|..||+|+-  .+.+.++.........+.+..  ..++.+    -.+|+|.+|+-.. 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~--~~F~Y~----l~NGTVGvY~~~~-   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG--GRFAYA----LANGTVGVYDRSQ-   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC--CEEEEE----ecCCEEEEEeCcc-
Confidence            56777754   2 258999999999999984  466777665554444433332  344444    5899999997533 


Q ss_pred             ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEE
Q psy6859         125 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVH  163 (261)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  163 (261)
                       .+-.++....+..+.....+.++... +++|-.+|.|-
T Consensus        73 -RlWRiKSK~~~~~~~~~D~~gdG~~e-LI~GwsnGkve  109 (111)
T PF14783_consen   73 -RLWRIKSKNQVTSMAFYDINGDGVPE-LIVGWSNGKVE  109 (111)
T ss_pred             -eeeeeccCCCeEEEEEEcCCCCCceE-EEEEecCCeEE
Confidence             23333333344444455555666543 67777788764

>KOG4640|consensus

Probab=98.19  E-value=1.1e-05  Score=64.05  Aligned_cols=76  Identities=16%  Similarity=0.183  Sum_probs=66.5

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecccccee-EEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIH-SICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      .|.-+.|+| -.++|.+..+|.+.+..+. .  +.+.++.-|..+++ +++|.|||+.|+.|-.||+|++.|+.++..+.
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~--qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-W--QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-c--ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            466789999 8899999999999999887 3  67777776777777 99999999999999999999999999887766


Q ss_pred             e
Q psy6859          83 M   83 (261)
Q Consensus        83 ~   83 (261)
                      .
T Consensus        99 ~   99 (665)
T KOG4640|consen   99 S   99 (665)
T ss_pred             c
Confidence            5

>smart00320 WD40 WD40 repeats

Probab=98.18  E-value=7.5e-06  Score=40.54  Aligned_cols=38  Identities=26%  Similarity=0.577  Sum_probs=34.0

Q ss_pred             eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859          37 EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus        37 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      ++...+..|...|.++.|.++++++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667778899999999999989999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.17  E-value=0.0016  Score=49.99  Aligned_cols=173  Identities=15%  Similarity=0.253  Sum_probs=102.7

Q ss_pred             CeEEEEeccCC-----ceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc-eeeeeeccCcceeEEEEe
Q psy6859          24 GHIKFWKKQEE-----GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD-MINMIKLDFTPLTVECIH   97 (261)
Q Consensus        24 ~~i~iw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~-~~~~~~~~~~~~~~~~~~   97 (261)
                      |.|.++++...     ..+.+.... ..++|++++-- ++ +|+.+ ..+.|.+|++...+ ....-.. ..+..+..+.
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~-~~~~~i~sl~  136 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFY-DSPFYITSLS  136 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE--BSSSEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhhee-cceEEEEEEe
Confidence            89999999873     233333333 56889998866 44 44444 34789999998877 4443332 2333556666


Q ss_pred             ecCCceeeeeeecCCCCeEEEEEcCC-CceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCC------
Q psy6859          98 YLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN------  170 (261)
Q Consensus        98 ~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~------  170 (261)
                      ..++.++.+    +.-..+.++..+. ...+..+.....+..+.++.+.+++.  .++.+..+|.+.++.....      
T Consensus       137 ~~~~~I~vg----D~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~--~~i~~D~~gnl~~l~~~~~~~~~~~  210 (321)
T PF03178_consen  137 VFKNYILVG----DAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED--TIIVGDKDGNLFVLRYNPEIPNSRD  210 (321)
T ss_dssp             EETTEEEEE----ESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS--EEEEEETTSEEEEEEE-SS-SSTTT
T ss_pred             ccccEEEEE----EcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc--EEEEEcCCCeEEEEEECCCCccccc
Confidence            667777665    6667777775543 33355555555677889999986664  3778888999999988621      


Q ss_pred             Cc-cc---eeeccCcccCeEEE---EEcCC--CC------EEEEEcCCCeEEEe
Q psy6859         171 GT-PL---HVLDRLHTKPVVLI---KFNPI--YQ------VVVSVDKAGILEYW  209 (261)
Q Consensus       171 ~~-~~---~~~~~~~~~~v~~~---~~~~~--~~------~l~~~~~dg~i~iw  209 (261)
                      +. .+   ..+  .....|+++   ++.|.  +.      .++.++.+|.|...
T Consensus       211 ~~~~L~~~~~f--~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  211 GDPKLERISSF--HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             TTTBEEEEEEE--E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ccccceeEEEE--ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            11 11   222  235567777   55552  22      37777788888733

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1920|consensus

Probab=98.15  E-value=0.00063  Score=58.63  Aligned_cols=189  Identities=7%  Similarity=0.091  Sum_probs=115.6

Q ss_pred             ccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEc----
Q psy6859          46 LGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC----  121 (261)
Q Consensus        46 ~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~----  121 (261)
                      .+.|.++.|..+...++.+..+|.|.+-|..+...... ..-...+.++.++++++.++.+    +..+++.+-+-    
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~vd~GI~aaswS~Dee~l~li----T~~~tll~mT~~f~~  142 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-GNVDNGISAASWSPDEELLALI----TGRQTLLFMTKDFEP  142 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeee-eeccCceEEEeecCCCcEEEEE----eCCcEEEEEeccccc
Confidence            35799999999988999999999999998876543322 2223457788888988877766    55566554321    


Q ss_pred             CCCcee-------------------eEEeecC-------------------CcceEEEEEEeCCCCceEEEE-----ecC
Q psy6859         122 KGNDMI-------------------NMIKLDF-------------------TPLTVECIHYLGDAIPTAAVS-----DQD  158 (261)
Q Consensus       122 ~~~~~~-------------------~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-----~~~  158 (261)
                      -..+++                   ..+.+..                   ....=..+.|-+|+.+  +++     ...
T Consensus       143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~--fAVs~~~~~~~  220 (1265)
T KOG1920|consen  143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY--FAVSFVESETG  220 (1265)
T ss_pred             hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE--EEEEEEeccCC
Confidence            111111                   0111000                   0001134888899976  332     232


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc---CCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD---KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF  235 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
                      ...|++||..  +. +..........=.+++|-|.|..+++-.   .|+.|.+|..+.-            ..++....+
T Consensus       221 ~RkirV~drE--g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL------------~hg~f~l~~  285 (1265)
T KOG1920|consen  221 TRKIRVYDRE--GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL------------RHGEFVLPF  285 (1265)
T ss_pred             ceeEEEeccc--ch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc------------cccccccCC
Confidence            3789999975  32 2222112334446789999999988754   5567888875321            112222223


Q ss_pred             CCCccceeeeeECCCCceEEE
Q psy6859         236 AKNKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       236 ~~~~~~v~~~~~s~~~~~l~s  256 (261)
                      .....++..++|+.++..||+
T Consensus       286 p~de~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  286 PLDEKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             cccccchheeeecCCCCceee
Confidence            334455899999999999887

>smart00320 WD40 WD40 repeats

Probab=98.12  E-value=1e-05  Score=40.03  Aligned_cols=38  Identities=29%  Similarity=0.518  Sum_probs=33.1

Q ss_pred             ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859         172 TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       172 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      +++..+. .|...|.++.|+|++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4456665 7888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4649|consensus

Probab=98.10  E-value=0.0015  Score=46.95  Aligned_cols=112  Identities=13%  Similarity=0.010  Sum_probs=82.8

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeE
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTV   93 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   93 (261)
                      ..+++.|+..+.+.--|..+++......+.   ..|.+-+.- -|++++.|+..|.+++.+.++|+....+.........
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~   98 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR   98 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence            468888999999998898887443333332   333333322 3558999999999999999999888877765554555


Q ss_pred             EEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec
Q psy6859          94 ECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD  133 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~  133 (261)
                      ....+++..+...    +.|++.+..|.++..++...+..
T Consensus        99 a~~d~~~glIycg----shd~~~yalD~~~~~cVykskcg  134 (354)
T KOG4649|consen   99 AQCDFDGGLIYCG----SHDGNFYALDPKTYGCVYKSKCG  134 (354)
T ss_pred             eEEcCCCceEEEe----cCCCcEEEecccccceEEecccC
Confidence            5666777777766    99999999999998888776543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.10  E-value=0.0026  Score=49.57  Aligned_cols=235  Identities=11%  Similarity=0.069  Sum_probs=111.7

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeE-Eeec-------c---------ccceeEEEEeeCCCEEEEEe
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVK-HFRS-------H---------LGVIHSICTNYNGTLLCTVA   65 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~-------~---------~~~v~~~~~~~~~~~l~s~~   65 (261)
                      ..+....|+| ++.++-.. ++.|.+++..++  ...+ +..+       -         -+.-..+.|+||+++|+...
T Consensus        43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~--~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG--QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS--EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             cccccceeecCCCeeEEEe-cCceEEEECCCC--CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            3567789999 88877765 578999987665  2221 2222       0         11235788999999988775


Q ss_pred             CC-CcEEEEEcc---cc-c---eeeeeecc---------------------------------CcceeEEEEeecCCcee
Q psy6859          66 SD-KAMKVFDVI---NF-D---MINMIKLD---------------------------------FTPLTVECIHYLGDAIP  104 (261)
Q Consensus        66 ~d-g~v~~wd~~---~~-~---~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~  104 (261)
                      .| ..|+.+.+.   .. .   .+..++.+                                 ......+.+.+++..++
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence            43 344443322   11 1   11111100                                 00111122222332222


Q ss_pred             eeeeec-CCCCeEEEEEcCCCceeeEEeecCCcce---EEEEEEe-CCCCceEEEEecCCCeEEEEEccCCCccceeecc
Q psy6859         105 TAAVSD-QDSSRVHIYDCKGNDMINMIKLDFTPLT---VECIHYL-GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR  179 (261)
Q Consensus       105 ~~~~s~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  179 (261)
                      .....- .....+.++|..++.....+... .+..   .....+. +++...+.++- .+|.-+||-+...+...+.+. 
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT-  276 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLT-  276 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccc-
Confidence            221110 11123444565555433333221 1111   1234444 66665555554 677766655553445555665 


Q ss_pred             CcccCeEE-EEEcCCCCEE-EEEcCC--CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEE
Q psy6859         180 LHTKPVVL-IKFNPIYQVV-VSVDKA--GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV  255 (261)
Q Consensus       180 ~~~~~v~~-~~~~~~~~~l-~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  255 (261)
                      ...-.|+. +.++++++.| +++..+  ..-.+|.+.-             ..+.....+......-..+.|||+|++++
T Consensus       277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~-------------~~~~~~~~LT~~~~~~~~~~~Spdg~y~v  343 (353)
T PF00930_consen  277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL-------------DSGGEPKCLTCEDGDHYSASFSPDGKYYV  343 (353)
T ss_dssp             -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET-------------TETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred             cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe-------------CCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence            55666755 6888888755 455542  3445555431             11233344443222226899999999887


Q ss_pred             Ee
Q psy6859         256 TI  257 (261)
Q Consensus       256 s~  257 (261)
                      -.
T Consensus       344 ~~  345 (353)
T PF00930_consen  344 DT  345 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.09  E-value=0.0021  Score=50.47  Aligned_cols=203  Identities=12%  Similarity=0.117  Sum_probs=104.1

Q ss_pred             CCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeec------cccceeEEEEee-----CC---CEEEEEeCCC
Q psy6859           3 RSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRS------HLGVIHSICTNY-----NG---TLLCTVASDK   68 (261)
Q Consensus         3 ~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l~s~~~dg   68 (261)
                      +++|++++.|.=.++|.|..+|.+.|.|+.....-....+..      ....|+++.|..     |+   -.+++|...|
T Consensus        86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G  165 (395)
T PF08596_consen   86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG  165 (395)
T ss_dssp             S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred             CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence            689999999984489999999999999997752222222322      234578888862     22   3688888999


Q ss_pred             cEEEEEccc---cceeeeee-----ccCcceeEEEEeecCC-----------------ceeeeeeecCCCCeEEEEEcCC
Q psy6859          69 AMKVFDVIN---FDMINMIK-----LDFTPLTVECIHYLGD-----------------AIPTAAVSDQDSSRVHIYDCKG  123 (261)
Q Consensus        69 ~v~~wd~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~-----------------~~~~~~~s~~~d~~i~i~d~~~  123 (261)
                      .+.+|.+.-   +.....+.     .......+..+..+..                 .+-...+ ...+..++++.+.+
T Consensus       166 ~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV-vvSe~~irv~~~~~  244 (395)
T PF08596_consen  166 NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV-VVSESDIRVFKPPK  244 (395)
T ss_dssp             EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE-EE-SSEEEEE-TT-
T ss_pred             CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE-EEcccceEEEeCCC
Confidence            999998751   21111111     1112222333321110                 0000101 13688899999887


Q ss_pred             CceeeEEeecCCcceEEEEEEeC---CCCceEEEEecCCCeEEEEEccCCCccceeeccC----cccCeEEEEEcCCCCE
Q psy6859         124 NDMINMIKLDFTPLTVECIHYLG---DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL----HTKPVVLIKFNPIYQV  196 (261)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~  196 (261)
                      .+..+...  ..+..+..+.+-+   ......+++-..+|.+++|.+. .-+.+..+. .    ....+....++++|+.
T Consensus       245 ~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP-~Lkei~~~~-l~~~~d~~~~~~ssis~~Gdi  320 (395)
T PF08596_consen  245 SKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP-SLKEIKSVS-LPPPLDSRRLSSSSISRNGDI  320 (395)
T ss_dssp             --EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT-T--EEEEEE--SS---HHHHTT-EE-TTS-E
T ss_pred             Ccccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC-CchHhhccc-CCCccccccccccEECCCCCE
Confidence            76655444  2223333344421   1111336666779999999998 667776664 2    1223445678999997


Q ss_pred             EEEEcCCCeEEEeec
Q psy6859         197 VVSVDKAGILEYWSG  211 (261)
Q Consensus       197 l~~~~~dg~i~iwd~  211 (261)
                      ++-.+.. .+.++.+
T Consensus       321 ~~~~gps-E~~l~sv  334 (395)
T PF08596_consen  321 FYWTGPS-EIQLFSV  334 (395)
T ss_dssp             EEE-SSS-EEEEEEE
T ss_pred             EEEeCcc-cEEEEEE
Confidence            7666533 3444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4640|consensus

Probab=98.05  E-value=4.3e-05  Score=60.92  Aligned_cols=73  Identities=12%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeE-EEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         136 PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVV-LIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      +..+..+.|+|...-  +|.+..+|.+.+..+.  .+.+.+++ -+..+++ +++|.|||+.||.|-.||+|++.|+..
T Consensus        20 ~~~i~~~ewnP~~dL--iA~~t~~gelli~R~n--~qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDL--IATRTEKGELLIHRLN--WQRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             ccceEEEEEcCccch--hheeccCCcEEEEEec--cceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            446778889998864  7888889999999885  56777885 5777777 999999999999999999999999965

>KOG2395|consensus

Probab=98.03  E-value=0.00027  Score=55.59  Aligned_cols=145  Identities=9%  Similarity=0.043  Sum_probs=96.9

Q ss_pred             EEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCc--ee-eeeeecCCCCeEEEEEcCCCc--eeeEEeecC-
Q psy6859          61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDA--IP-TAAVSDQDSSRVHIYDCKGND--MINMIKLDF-  134 (261)
Q Consensus        61 l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~s~~~d~~i~i~d~~~~~--~~~~~~~~~-  134 (261)
                      +.++.....++-.|++.|+.+.+.+.+.. +....+.++...  +. ...+-|-.++.|.-||++-..  .+...+.+. 
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            34455556788889999999999887765 455555554321  10 111123478889999988432  222222211 


Q ss_pred             -CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         135 -TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                       ......|++-..+|.   ++.|+.+|.|++||.- .......++ +...+|..+..+.+|++|+..+ +..+.+.++.
T Consensus       428 ~~k~nFsc~aTT~sG~---IvvgS~~GdIRLYdri-~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  428 STKNNFSCFATTESGY---IVVGSLKGDIRLYDRI-GRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ccccccceeeecCCce---EEEeecCCcEEeehhh-hhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence             223456777777775   8899999999999974 444555665 8889999999999999887666 5567777764

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.00  E-value=0.0027  Score=46.41  Aligned_cols=195  Identities=12%  Similarity=0.128  Sum_probs=105.7

Q ss_pred             CCeEEEEEcC-C-CeEEEecCCCeEEEEeccCCceeeeEEeecc-ccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc-
Q psy6859           4 SPITHVVVTK-T-DFVITASNDGHIKFWKKQEEGIEFVKHFRSH-LGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD-   79 (261)
Q Consensus         4 ~~v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~-   79 (261)
                      +.+..|+|+| . .++++....+.|...+.+.   +.++.+.-. .+..-.|++..++.++++.-+++.+.++++.... 
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G---~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDG---KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCCC---CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence            4589999999 4 4666777778887777653   445544322 2567889998888777776678999999884321 


Q ss_pred             -----eeeeeec-----cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC---CceeeEEe------ecCCcceEE
Q psy6859          80 -----MINMIKL-----DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG---NDMINMIK------LDFTPLTVE  140 (261)
Q Consensus        80 -----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---~~~~~~~~------~~~~~~~~~  140 (261)
                           ....+..     +......+++.+.++.++.+    -...-..+|.++.   ...+....      ....-..+.
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~----kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA----KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEETTTTEEEEE----EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE----eCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence                 1222221     12234566777776666655    4444555665543   21111111      111222467


Q ss_pred             EEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec--cC-c-----ccCeEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859         141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD--RL-H-----TKPVVLIKFNPIYQVVVSVDKAGILEYW  209 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~-~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iw  209 (261)
                      .++++|....++++ ...+..|..+|.  .++++..+.  .+ |     -...-.|+|.++|++.++ ++-+...+|
T Consensus       175 ~l~~~p~t~~lliL-S~es~~l~~~d~--~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLIL-SDESRLLLELDR--QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEE-ETTTTEEEEE-T--T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             ceEEcCCCCeEEEE-ECCCCeEEEECC--CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            88999987765444 466888999995  677766554  11 1     135788999999975444 455544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3617|consensus

Probab=98.00  E-value=1.6e-05  Score=65.59  Aligned_cols=114  Identities=12%  Similarity=0.211  Sum_probs=89.1

Q ss_pred             eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCC
Q psy6859          91 LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN  170 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  170 (261)
                      .++..++|....++...+|+...|.|.||- .++++.....   .|..+.+++|+|...  +++.|-.-|.+.+|... +
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt---~P~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~-~   90 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT---YPVHATSLCWHPEEF--VLAQGWEMGVSDVQKTN-T   90 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc---cceehhhhccChHHH--HHhhccccceeEEEecC-C
Confidence            345567777777888888888999999985 4555555444   344567899999884  47888888999999986 4


Q ss_pred             CccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         171 GTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       171 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      .+ ..++...|..+|..+.|||+|..|+++..-|.+.+|...
T Consensus        91 ~e-~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   91 TE-THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ce-eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            43 334433899999999999999999999999999999876

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.96  E-value=0.0032  Score=45.93  Aligned_cols=202  Identities=12%  Similarity=0.079  Sum_probs=111.6

Q ss_pred             eeeEEeecccc--ceeEEEEeeCCCEEEEEeCCC--cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC
Q psy6859          37 EFVKHFRSHLG--VIHSICTNYNGTLLCTVASDK--AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  112 (261)
Q Consensus        37 ~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  112 (261)
                      +.+.++. |..  -...+.|..++.++-+.+.-|  .|+.+|+.+++......++..- -.--+...++.+..+   .-.
T Consensus        34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~-FgEGit~~~d~l~qL---TWk  108 (264)
T PF05096_consen   34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY-FGEGITILGDKLYQL---TWK  108 (264)
T ss_dssp             EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEE---ESS
T ss_pred             EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-cceeEEEECCEEEEE---Eec
Confidence            3444554 432  345788878888888888777  6999999999988877765532 122222224555544   157


Q ss_pred             CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec-cCc---ccCeEEE
Q psy6859         113 SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLH---TKPVVLI  188 (261)
Q Consensus       113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~---~~~v~~~  188 (261)
                      ++...+||..+.+.+..+....   .-..++...+.    ++.......++++|.. +.+..+.++ ...   -..++.+
T Consensus       109 ~~~~f~yd~~tl~~~~~~~y~~---EGWGLt~dg~~----Li~SDGS~~L~~~dP~-~f~~~~~i~V~~~g~pv~~LNEL  180 (264)
T PF05096_consen  109 EGTGFVYDPNTLKKIGTFPYPG---EGWGLTSDGKR----LIMSDGSSRLYFLDPE-TFKEVRTIQVTDNGRPVSNLNEL  180 (264)
T ss_dssp             SSEEEEEETTTTEEEEEEE-SS---S--EEEECSSC----EEEE-SSSEEEEE-TT-T-SEEEEEE-EETTEE---EEEE
T ss_pred             CCeEEEEccccceEEEEEecCC---cceEEEcCCCE----EEEECCccceEEECCc-ccceEEEEEEEECCEECCCcEeE
Confidence            8999999999999888887653   33555544333    3333346789999987 666666664 111   2235556


Q ss_pred             EEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec------CCCccceeeeeECCCCceEEEee
Q psy6859         189 KFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF------AKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       189 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      .|- +|...|=.-....|...|..++....-    .  .........      .....-.+.+|+.|..+.|...|
T Consensus       181 E~i-~G~IyANVW~td~I~~Idp~tG~V~~~----i--Dls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  181 EYI-NGKIYANVWQTDRIVRIDPETGKVVGW----I--DLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEE-TTEEEEEETTSSEEEEEETTT-BEEEE----E--E-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEE-cCEEEEEeCCCCeEEEEeCCCCeEEEE----E--EhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            665 565555555555666666654321100    0  000000000      01145678999998766555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.95  E-value=0.0036  Score=49.72  Aligned_cols=51  Identities=14%  Similarity=0.190  Sum_probs=36.9

Q ss_pred             cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc
Q psy6859          69 AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND  125 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~  125 (261)
                      .|.+|+. .|+.+.++......+..+.+..+ ..++.+    ..||.+++||+....
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV----~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVV----QSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEE----EcCCEEEEEeCCCce
Confidence            4889985 77888887777655656666554 445555    699999999987544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.95  E-value=0.0071  Score=49.37  Aligned_cols=180  Identities=11%  Similarity=0.047  Sum_probs=102.2

Q ss_pred             CCCeEEEEeccCCceeeeEEeecccc--------------------ce-eEEEEeeCCCEEEEEeCCC------------
Q psy6859          22 NDGHIKFWKKQEEGIEFVKHFRSHLG--------------------VI-HSICTNYNGTLLCTVASDK------------   68 (261)
Q Consensus        22 ~d~~i~iw~~~~~~~~~~~~~~~~~~--------------------~v-~~~~~~~~~~~l~s~~~dg------------   68 (261)
                      .++.+...|.+++  +.+..++....                    .+ ...++.+.+..++.++.++            
T Consensus       173 ~~g~v~alD~~TG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~  250 (488)
T cd00216         173 VRGALRAYDVETG--KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPG  250 (488)
T ss_pred             CCcEEEEEECCCC--ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCC
Confidence            3677888888877  44444332110                    01 1234444455777776655            


Q ss_pred             ------cEEEEEccccceeeeeeccCcce---------eEEEEe-ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee
Q psy6859          69 ------AMKVFDVINFDMINMIKLDFTPL---------TVECIH-YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL  132 (261)
Q Consensus        69 ------~v~~wd~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~  132 (261)
                            .|.-+|..+|+.+..++......         ...... -++... ...+.++.+|.+..+|.++++.+-....
T Consensus       251 ~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~-~~V~~g~~~G~l~ald~~tG~~~W~~~~  329 (488)
T cd00216         251 DNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV-PAIVHAPKNGFFYVLDRTTGKLISARPE  329 (488)
T ss_pred             CCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee-EEEEEECCCceEEEEECCCCcEeeEeEe
Confidence                  68899999999888876432211         011111 122211 1223347899999999999988776553


Q ss_pred             cCCcceEEEEEEeCCCCceEEEE-----------------ecCCCeEEEEEccCCCccceeeccCcc--------cCeEE
Q psy6859         133 DFTPLTVECIHYLGDAIPTAAVS-----------------DQDSSHVHIYDCKGNGTPLHVLDRLHT--------KPVVL  187 (261)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~v~~  187 (261)
                      ..     ..+..+|+.   +++.                 ...+|.+.-.|+. +++.+.+.+ ...        .+...
T Consensus       330 ~~-----~~~~~~~~~---vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~-tG~~~W~~~-~~~~~~~~~~g~~~~~  399 (488)
T cd00216         330 VE-----QPMAYDPGL---VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK-TGKVVWEKR-EGTIRDSWNIGFPHWG  399 (488)
T ss_pred             ec-----cccccCCce---EEEccccccccCcccccCCCCCCCceEEEEEeCC-CCcEeeEee-CCccccccccCCcccC
Confidence            21     112223311   1221                 1246789999998 888877775 220        11111


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         188 IKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       188 ~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      -.....+..|+.++.||.|+.+|.+++
T Consensus       400 ~~~~~~g~~v~~g~~dG~l~ald~~tG  426 (488)
T cd00216         400 GSLATAGNLVFAGAADGYFRAFDATTG  426 (488)
T ss_pred             cceEecCCeEEEECCCCeEEEEECCCC
Confidence            111124568888889999999998654

The alignment model contains an 8-bladed beta-propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.93  E-value=0.0011  Score=54.21  Aligned_cols=145  Identities=10%  Similarity=0.041  Sum_probs=81.9

Q ss_pred             eCCCEEEEEe-CCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC
Q psy6859          56 YNGTLLCTVA-SDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF  134 (261)
Q Consensus        56 ~~~~~l~s~~-~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~  134 (261)
                      |||+.+...+ ..+.+.+.|..+.+...++.....+ ....+.+++.++++..+..-...++...+......+..+... 
T Consensus       202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnp-d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~-  279 (635)
T PRK02888        202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNL-DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA-  279 (635)
T ss_pred             CCCCEeecccceeEEEEEEECccceEEEEEEeCCCc-ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH-
Confidence            3454443222 2345667777777766666665543 345666677766655221112223333333222222222111 


Q ss_pred             CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCC-----CccceeeccCcccCeEEEEEcCCCCEEEEEc-CCCeEEE
Q psy6859         135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN-----GTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEY  208 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i  208 (261)
                         .+.  .+.+++.+. .+   .++.|.+.|.+ +     .+.+..+  .-......+.++|||+++++++ .+.++.+
T Consensus       280 ---~ie--a~vkdGK~~-~V---~gn~V~VID~~-t~~~~~~~v~~yI--PVGKsPHGV~vSPDGkylyVanklS~tVSV  347 (635)
T PRK02888        280 ---RIE--EAVKAGKFK-TI---GGSKVPVVDGR-KAANAGSALTRYV--PVPKNPHGVNTSPDGKYFIANGKLSPTVTV  347 (635)
T ss_pred             ---HHH--HhhhCCCEE-EE---CCCEEEEEECC-ccccCCcceEEEE--ECCCCccceEECCCCCEEEEeCCCCCcEEE
Confidence               000  223456543 22   26789999998 5     3556666  3566678999999999886554 7899999


Q ss_pred             eecccc
Q psy6859         209 WSGYKQ  214 (261)
Q Consensus       209 wd~~~~  214 (261)
                      .|+...
T Consensus       348 IDv~k~  353 (635)
T PRK02888        348 IDVRKL  353 (635)
T ss_pred             EEChhh
Confidence            999753

>KOG3621|consensus

Probab=97.91  E-value=0.00013  Score=59.06  Aligned_cols=105  Identities=13%  Similarity=0.087  Sum_probs=70.8

Q ss_pred             EEeCCCCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCee
Q psy6859         143 HYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKC  221 (261)
Q Consensus       143 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  221 (261)
                      +++....+  ++.|+.-|.+++|+.. .++. ..++ .+....+..+..+++..++|.|+..|.|.++-+....   |  
T Consensus        40 c~dst~~~--l~~GsS~G~lyl~~R~-~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~---p--  110 (726)
T KOG3621|consen   40 CVDATEEY--LAMGSSAGSVYLYNRH-TGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL---P--  110 (726)
T ss_pred             EeecCCce--EEEecccceEEEEecC-chhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC---C--
Confidence            33344444  7778889999999976 4433 3332 1345556667889999899999999999999886421   0  


Q ss_pred             eeeecccccceeec-CCCccceeeeeECCCCceEEEeecCC
Q psy6859         222 VHFESKLDTDLFEF-AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       222 ~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                           .....+... +.|...|++++|++|+..|.+|..-|
T Consensus       111 -----~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~G  146 (726)
T KOG3621|consen  111 -----RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQG  146 (726)
T ss_pred             -----CcceeeccccccCCceEEEEEecccccEEeecCCCc
Confidence                 000011111 22789999999999999999986544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.90  E-value=0.008  Score=49.05  Aligned_cols=154  Identities=12%  Similarity=0.073  Sum_probs=88.4

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeeccccc-----ee-EEEEeeCCCEEEEEe---------CCCcEEEEEccccc
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGV-----IH-SICTNYNGTLLCTVA---------SDKAMKVFDVINFD   79 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~l~s~~---------~dg~v~~wd~~~~~   79 (261)
                      ..++.++.++.|.-+|.+++  +.+..+......     +. ...+. + ..++.++         .++.+.-+|..+|+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG--~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~  186 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETG--KQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGK  186 (488)
T ss_pred             CeEEEecCCCeEEEEECCCC--CEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCc
Confidence            57777888999999999887  444444322110     11 11121 2 3455543         36789999999999


Q ss_pred             eeeeeeccCcce---------------------eEEEEeecCCceeeeeeecCCC------------------CeEEEEE
Q psy6859          80 MINMIKLDFTPL---------------------TVECIHYLGDAIPTAAVSDQDS------------------SRVHIYD  120 (261)
Q Consensus        80 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~s~~~d------------------~~i~i~d  120 (261)
                      .+..++......                     ....+.+.+..++..    +.+                  +.|.-+|
T Consensus       187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg----~~~g~~~~~~~~~~~~~~~~~~~l~Ald  262 (488)
T cd00216         187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVG----TGNGSPWNWGGRRTPGDNLYTDSIVALD  262 (488)
T ss_pred             eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEE----CCCCCCCccCCccCCCCCCceeeEEEEc
Confidence            888776431100                     001111223334333    333                  3799999


Q ss_pred             cCCCceeeEEeecCCcc---------eEEEEE-EeCCCCceEEEEecCCCeEEEEEccCCCccceeec
Q psy6859         121 CKGNDMINMIKLDFTPL---------TVECIH-YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       121 ~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  178 (261)
                      .++++.+-.++...+..         .+..+. .+... ..+++.++.+|.+...|.+ +++++...+
T Consensus       263 ~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~-~~~V~~g~~~G~l~ald~~-tG~~~W~~~  328 (488)
T cd00216         263 ADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP-VPAIVHAPKNGFFYVLDRT-TGKLISARP  328 (488)
T ss_pred             CCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe-eEEEEEECCCceEEEEECC-CCcEeeEeE
Confidence            99998877765432211         111111 11111 1246677889999999999 998887764

The alignment model contains an 8-bladed beta-propeller.

>KOG2444|consensus

Probab=97.81  E-value=3.9e-05  Score=53.62  Aligned_cols=143  Identities=8%  Similarity=-0.013  Sum_probs=83.1

Q ss_pred             EEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEE
Q psy6859          61 LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVE  140 (261)
Q Consensus        61 l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  140 (261)
                      +..-+.||.|+-++++..+....-..-  ......+...+..++++    +.+|.|.+|.............. ....+.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~--~~e~~~v~~~~~~~~vG----~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~  105 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERF--IDEGQRVVTASAKLMVG----TSDGAVYVFNWNLEGAHSDRVCS-GEESID  105 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhh--hhcceeecccCceEEee----cccceEEEecCCccchHHHhhhc-ccccce
Confidence            444477888888887644322211100  01112222233444444    89999999987732211111110 111333


Q ss_pred             EEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcc-cCeEEEEEcCCCCEEEEE--cCCCeEEEeeccc
Q psy6859         141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHT-KPVVLIKFNPIYQVVVSV--DKAGILEYWSGYK  213 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~  213 (261)
                      ++-...+.. .+..++..++.|+.|++. ..+.+...- .|+ .++..+..+..+++|+.+  +.|..++.|++..
T Consensus       106 ~~Ip~~~~~-~~~c~~~~dg~ir~~n~~-p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  106 LGIPNGRDS-SLGCVGAQDGRIRACNIK-PNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ecccccccc-ceeEEeccCCceeeeccc-cCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            443333332 236777889999999998 776666664 566 667777777777788777  7888899998864

>KOG4649|consensus

Probab=97.79  E-value=0.0031  Score=45.40  Aligned_cols=123  Identities=14%  Similarity=-0.045  Sum_probs=81.2

Q ss_pred             CCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc
Q psy6859          58 GTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL  137 (261)
Q Consensus        58 ~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~  137 (261)
                      .++++.|+..+.+.--|..+|+.+.+............+  -++++...    ...+.+++.+.++++....+.....- 
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~G----Cy~g~lYfl~~~tGs~~w~f~~~~~v-   95 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLG----CYSGGLYFLCVKTGSQIWNFVILETV-   95 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEE----EccCcEEEEEecchhheeeeeehhhh-
Confidence            457888889999999999999887765544332222222  34555444    68999999999999877776653322 


Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcC
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP  192 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  192 (261)
                      .+ .....+++.  ++..|+.|++.+..|.+ +...+...+ .....-.+-+..|
T Consensus        96 k~-~a~~d~~~g--lIycgshd~~~yalD~~-~~~cVyksk-cgG~~f~sP~i~~  145 (354)
T KOG4649|consen   96 KV-RAQCDFDGG--LIYCGSHDGNFYALDPK-TYGCVYKSK-CGGGTFVSPVIAP  145 (354)
T ss_pred             cc-ceEEcCCCc--eEEEecCCCcEEEeccc-ccceEEecc-cCCceeccceecC
Confidence            11 222334443  48899999999999999 777777765 3333333344555

>KOG2395|consensus

Probab=97.78  E-value=0.00079  Score=53.09  Aligned_cols=130  Identities=9%  Similarity=0.079  Sum_probs=86.2

Q ss_pred             ecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceE-----EEEecCCCeEEEEEccCCCc-cceeeccCc-
Q psy6859         109 SDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTA-----AVSDQDSSHVHIYDCKGNGT-PLHVLDRLH-  181 (261)
Q Consensus       109 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~-  181 (261)
                      ++.....++-.|++.++.+...+.+..   |.-+.+.|+....-     -+.|-.++.|.-||.|-.+. .+...+ .| 
T Consensus       351 ~~~~~~~l~klDIE~GKIVeEWk~~~d---i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q-~kq  426 (644)
T KOG2395|consen  351 DGGEQDKLYKLDIERGKIVEEWKFEDD---INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ-SKQ  426 (644)
T ss_pred             CCCCcCcceeeecccceeeeEeeccCC---cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee-ccc
Confidence            345567788889999999888887543   44455555543211     23455688999999984444 222222 22 


Q ss_pred             ---ccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         182 ---TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       182 ---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                         .....|.+-..+| ++++|+.+|.|++||--.               .+....+.+...+|..+..+.||++|+..+
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~---------------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG---------------RRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehhhh---------------hhhhhcccccCCceeeEEeeccCcEEEEec
Confidence               2334444444444 799999999999999521               233345677888999999999999887654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.78  E-value=0.0087  Score=45.35  Aligned_cols=138  Identities=9%  Similarity=0.114  Sum_probs=87.7

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe----------CCCcEEEEEccccceeeeeeccCcc---
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA----------SDKAMKVFDVINFDMINMIKLDFTP---   90 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~v~~wd~~~~~~~~~~~~~~~~---   90 (261)
                      +.+.++|.+++  +.+-.+..  +-.-.+..+|+++.+++++          +.-.|.+||..+.+...++.++..+   
T Consensus        17 ~rv~viD~d~~--k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSG--KLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTT--EEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred             ceEEEEECCCC--cEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence            57889998876  66655542  2334466789999888754          2336999999999888887766541   


Q ss_pred             ----eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEE
Q psy6859          91 ----LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYD  166 (261)
Q Consensus        91 ----~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  166 (261)
                          .....++.++++++..-++  -...|.+.|+..++.+..+..+.    +..+-..++..   +.+-+.||.+.-..
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~T--Pa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~---F~~lC~DGsl~~v~  163 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFT--PATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRG---FSMLCGDGSLLTVT  163 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEES--SSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTE---EEEEETTSCEEEEE
T ss_pred             ecccccceEEccCCcEEEEEccC--CCCeEEEEECCCCceeeeecCCC----EEEEEecCCCc---eEEEecCCceEEEE
Confidence                1233555566666655443  35678888888888887776532    22222233222   44555689998888


Q ss_pred             ccCCCccc
Q psy6859         167 CKGNGTPL  174 (261)
Q Consensus       167 ~~~~~~~~  174 (261)
                      +...++..
T Consensus       164 Ld~~Gk~~  171 (342)
T PF06433_consen  164 LDADGKEA  171 (342)
T ss_dssp             ETSTSSEE
T ss_pred             ECCCCCEe
Confidence            87556554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=0.012  Score=46.47  Aligned_cols=185  Identities=15%  Similarity=0.164  Sum_probs=121.3

Q ss_pred             eeEEEEeeCCCEE-EEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCcee
Q psy6859          49 IHSICTNYNGTLL-CTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI  127 (261)
Q Consensus        49 v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~  127 (261)
                      -..+..++.++.+ +....++.|.+.|..+.+..........| ....+.++++.+...- .+..++++.+.|..+.+.+
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P-~~~~~~~~~~~vYV~n-~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGP-VGLAVDPDGKYVYVAN-AGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCC-ceEEECCCCCEEEEEe-cccCCceEEEEeCCCCeEE
Confidence            3577788877744 44445689999998887777777655543 4566777777666551 1114789999999998888


Q ss_pred             eEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccce-----eeccCcccCeEEEEEcCCCCEEEEEcC
Q psy6859         128 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLH-----VLDRLHTKPVVLIKFNPIYQVVVSVDK  202 (261)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~  202 (261)
                      ........|   ..+++.|++... +++...++.|.+.|.. .....+     .+  .-......+.++|+|.++.....
T Consensus       154 ~~~~vG~~P---~~~a~~p~g~~v-yv~~~~~~~v~vi~~~-~~~v~~~~~~~~~--~~~~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         154 ATIPVGNTP---TGVAVDPDGNKV-YVTNSDDNTVSVIDTS-GNSVVRGSVGSLV--GVGTGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             EEEecCCCc---ceEEECCCCCeE-EEEecCCCeEEEEeCC-Ccceecccccccc--ccCCCCceEEECCCCCEEEEEec
Confidence            875543333   789999999863 5555679999999976 444442     12  23344577899999997655443


Q ss_pred             C---CeEEEeecccccccCCeeeeeecccccceee-cCCCccceeeeeECCCCceEEEe
Q psy6859         203 A---GILEYWSGYKQEFKFPKCVHFESKLDTDLFE-FAKNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       203 d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~  257 (261)
                      .   +.+...|..++               ..... ...-......+..+|+|+.+.+.
T Consensus       227 ~~~~~~v~~id~~~~---------------~v~~~~~~~~~~~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         227 GSGSNNVLKIDTATG---------------NVTATDLPVGSGAPRGVAVDPAGKAAYVA  270 (381)
T ss_pred             cCCCceEEEEeCCCc---------------eEEEeccccccCCCCceeECCCCCEEEEE
Confidence            3   57888887542               22221 11111145567888888877665

>KOG3621|consensus

Probab=97.73  E-value=0.0013  Score=53.52  Aligned_cols=109  Identities=10%  Similarity=0.077  Sum_probs=78.2

Q ss_pred             EEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee----
Q psy6859          10 VVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI----   84 (261)
Q Consensus        10 ~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~----   84 (261)
                      ++.. +++++.|+.-|.+.+|+-..+. .......+-.+.+..+..+++..++|.|+..|.|.++-++.+..-...    
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence            3444 7899999999999999987652 222223334466677788888888899999999999988764322211    


Q ss_pred             --eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC
Q psy6859          85 --KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG  123 (261)
Q Consensus        85 --~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~  123 (261)
                        +.+...++++.|+.++..++++    ...|+|.+-.+..
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysG----D~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSG----DSQGKVVLTELDS  155 (726)
T ss_pred             ccccCCceEEEEEecccccEEeec----CCCceEEEEEech
Confidence              1234567788888888877665    8889999888776

>KOG4441|consensus

Probab=97.64  E-value=0.021  Score=47.39  Aligned_cols=186  Identities=11%  Similarity=0.079  Sum_probs=93.6

Q ss_pred             CCeEEEecCCC------eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-C-----cEEEEEcccccee
Q psy6859          14 TDFVITASNDG------HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-K-----AMKVFDVINFDMI   81 (261)
Q Consensus        14 ~~~l~s~~~d~------~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g-----~v~~wd~~~~~~~   81 (261)
                      +.+++.|+.++      .+..+|..++.+.....+... ..-.+++.. ++...++|+.| |     ++..||..+++..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            45677787773      677888887644555444422 223444444 45688888888 3     5778888877754


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCC-----eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS-----RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                      ..-....... ...+..-+..+.++   |+.||     .+..||.++.+--..-...... .-..++... +  .+.+.|
T Consensus       363 ~~a~M~~~R~-~~~v~~l~g~iYav---GG~dg~~~l~svE~YDp~~~~W~~va~m~~~r-~~~gv~~~~-g--~iYi~G  434 (571)
T KOG4441|consen  363 PVAPMNTKRS-DFGVAVLDGKLYAV---GGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR-SGHGVAVLG-G--KLYIIG  434 (571)
T ss_pred             ccCCccCccc-cceeEEECCEEEEE---eccccccccccEEEecCCCCcccccCCCCcce-eeeEEEEEC-C--EEEEEc
Confidence            4322222222 22222223444444   35553     5778888766432221111111 111222222 2  135555


Q ss_pred             cCC------CeEEEEEccCCC--ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCe-----EEEeeccc
Q psy6859         157 QDS------SHVHIYDCKGNG--TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGI-----LEYWSGYK  213 (261)
Q Consensus       157 ~~d------~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~  213 (261)
                      +.+      ..+..||.. +.  +.+..+. ..... ..++ .-++.+.+.|+.|+.     +..||..+
T Consensus       435 G~~~~~~~l~sve~YDP~-t~~W~~~~~M~-~~R~~-~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~  500 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPE-TNTWTLIAPMN-TRRSG-FGVA-VLNGKIYVVGGFDGTSALSSVERYDPET  500 (571)
T ss_pred             CcCCCccccceEEEEcCC-CCceeecCCcc-ccccc-ceEE-EECCEEEEECCccCCCccceEEEEcCCC
Confidence            533      346777776 43  2222222 11111 1122 235667788887763     66777755

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.63  E-value=0.015  Score=43.67  Aligned_cols=141  Identities=18%  Similarity=0.283  Sum_probs=82.6

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee---------
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI---------   84 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~---------   84 (261)
                      ++.|+.|..+| +.+++.... ........  ...|..+...++-+.++.-+ |+.+.++++.........         
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~-~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDP-SKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCC-ccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            67899999988 888888322 12333322  23499999998776766654 599999998765433311         


Q ss_pred             ----eccCcceeEEEEe----ecCCceeeeeeecCCCCeEEEEEcCCC-----ceeeEEeecCCcceEEEEEEeCCCCce
Q psy6859          85 ----KLDFTPLTVECIH----YLGDAIPTAAVSDQDSSRVHIYDCKGN-----DMINMIKLDFTPLTVECIHYLGDAIPT  151 (261)
Q Consensus        85 ----~~~~~~~~~~~~~----~~~~~~~~~~~s~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (261)
                          ..... ..+..+.    ..+...+.+    ...+.|.+|.....     +..+.+...   ..+..+.|.++.   
T Consensus        82 ~~~~~~~~~-~~v~~f~~~~~~~~~~~L~v----a~kk~i~i~~~~~~~~~f~~~~ke~~lp---~~~~~i~~~~~~---  150 (275)
T PF00780_consen   82 SLPTKLPET-KGVSFFAVNGGHEGSRRLCV----AVKKKILIYEWNDPRNSFSKLLKEISLP---DPPSSIAFLGNK---  150 (275)
T ss_pred             ccccccccc-CCeeEEeeccccccceEEEE----EECCEEEEEEEECCcccccceeEEEEcC---CCcEEEEEeCCE---
Confidence                11111 1122222    223333333    34568888887653     344555543   466788888555   


Q ss_pred             EEEEecCCCeEEEEEccCCCcc
Q psy6859         152 AAVSDQDSSHVHIYDCKGNGTP  173 (261)
Q Consensus       152 ~~~~~~~d~~i~i~d~~~~~~~  173 (261)
                       ++.|. .....+.|+. ++..
T Consensus       151 -i~v~~-~~~f~~idl~-~~~~  169 (275)
T PF00780_consen  151 -ICVGT-SKGFYLIDLN-TGSP  169 (275)
T ss_pred             -EEEEe-CCceEEEecC-CCCc
Confidence             44444 4457788887 5544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=97.58  E-value=0.017  Score=48.01  Aligned_cols=187  Identities=7%  Similarity=0.001  Sum_probs=88.4

Q ss_pred             CCeEEEecCC------CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC-----cEEEEEccccceee
Q psy6859          14 TDFVITASND------GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK-----AMKVFDVINFDMIN   82 (261)
Q Consensus        14 ~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~v~~wd~~~~~~~~   82 (261)
                      +.+++.|+.+      ..+..||..+..+..+..+...... .+ ...-+++..+.|+.++     .+..||..+.+...
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~-~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FS-LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-ee-EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            4566667643      3466777766533333322211111 12 2234677778888654     47889987765433


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCC-----------------------CeEEEEEcCCCceeeEEeecCCcceE
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-----------------------SRVHIYDCKGNDMINMIKLDFTPLTV  139 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-----------------------~~i~i~d~~~~~~~~~~~~~~~~~~~  139 (261)
                      .-..+........... ++.+...   |+.+                       ..+..||.++.+-...-...... .-
T Consensus       382 ~~~mp~~r~~~~~~~~-~g~IYvi---GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~  456 (557)
T PHA02713        382 LPDMPIALSSYGMCVL-DQYIYII---GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-IR  456 (557)
T ss_pred             CCCCCcccccccEEEE-CCEEEEE---eCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-cc
Confidence            2222221111112222 3344433   1222                       35778888776432211111111 11


Q ss_pred             EEEEEeCCCCceEEEEecCC------CeEEEEEccCC-C--ccceeeccCcccCeEEEEEcCCCCEEEEEcCCC--eEEE
Q psy6859         140 ECIHYLGDAIPTAAVSDQDS------SHVHIYDCKGN-G--TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG--ILEY  208 (261)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~d------~~i~i~d~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i  208 (261)
                      .+++...+.   +.+.|+.+      ..+..||.. + .  ..+..++ ........+.+  ++++.++|+.++  .+..
T Consensus       457 ~~~~~~~~~---IYv~GG~~~~~~~~~~ve~Ydp~-~~~~W~~~~~m~-~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~  529 (557)
T PHA02713        457 PGVVSHKDD---IYVVCDIKDEKNVKTCIFRYNTN-TYNGWELITTTE-SRLSALHTILH--DNTIMMLHCYESYMLQDT  529 (557)
T ss_pred             CcEEEECCE---EEEEeCCCCCCccceeEEEecCC-CCCCeeEccccC-cccccceeEEE--CCEEEEEeeecceeehhh
Confidence            123333333   24445433      246788887 4 2  3333342 22222222222  677778888888  6778


Q ss_pred             eecccc
Q psy6859         209 WSGYKQ  214 (261)
Q Consensus       209 wd~~~~  214 (261)
                      ||+.++
T Consensus       530 yd~~~~  535 (557)
T PHA02713        530 FNVYTY  535 (557)
T ss_pred             cCcccc
Confidence            887553

>KOG4441|consensus

Probab=97.57  E-value=0.018  Score=47.87  Aligned_cols=199  Identities=12%  Similarity=0.063  Sum_probs=99.5

Q ss_pred             EEEEEcCCCeEEEecCC------CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCc-----EEEEEc
Q psy6859           7 THVVVTKTDFVITASND------GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKA-----MKVFDV   75 (261)
Q Consensus         7 ~~~~~~~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-----v~~wd~   75 (261)
                      .++++.++.++++|+.|      .++..||.....+.....+....... +++ .-+|...+.|+.||.     +-.||.
T Consensus       326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~-~l~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVA-VLDGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeE-EECCEEEEEeccccccccccEEEecC
Confidence            35555567788999998      35667777776444433333222211 111 236778899998864     777887


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCC--CeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS--SRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
                      .+.+.-..-...............+...+.+...++.+  ..+..||..++.-...-...... .-..++...+.   ++
T Consensus       404 ~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-~~~g~a~~~~~---iY  479 (571)
T KOG4441|consen  404 VTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-SGFGVAVLNGK---IY  479 (571)
T ss_pred             CCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc-ccceEEEECCE---EE
Confidence            76654333222222222222233333333332222222  57889998877543322221111 22234444443   35


Q ss_pred             EEecCCCe-----EEEEEccCCCccceeeccCcccCeEEEEEc-CCCCEEEEEcCCC-----eEEEeecccc
Q psy6859         154 VSDQDSSH-----VHIYDCKGNGTPLHVLDRLHTKPVVLIKFN-PIYQVVVSVDKAG-----ILEYWSGYKQ  214 (261)
Q Consensus       154 ~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg-----~i~iwd~~~~  214 (261)
                      +.|+.++.     +..||.. +.+-... . ....+...+... -+++..+.|+.||     +|..||..++
T Consensus       480 vvGG~~~~~~~~~VE~ydp~-~~~W~~v-~-~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  480 VVGGFDGTSALSSVERYDPE-TNQWTMV-A-PMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             EECCccCCCccceEEEEcCC-CCceeEc-c-cCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence            66665652     6778876 4322211 1 122222222222 2455667777776     4667776543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.56  E-value=0.017  Score=44.64  Aligned_cols=155  Identities=10%  Similarity=0.051  Sum_probs=73.3

Q ss_pred             EEEeeCCCEEEEEeC-CC--cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee
Q psy6859          52 ICTNYNGTLLCTVAS-DK--AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN  128 (261)
Q Consensus        52 ~~~~~~~~~l~s~~~-dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~  128 (261)
                      =+|.+||+.|+.++. ||  .+.+.|+.+++..+--...........+++..+.++.+    ..+..+.-.|+++.+...
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv----~~~~~l~~vdL~T~e~~~  116 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYV----KNGRSLRRVDLDTLEERV  116 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEE----ETTTEEEEEETTT--EEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEE----ECCCeEEEEECCcCcEEE
Confidence            356788876665554 44  57777888877665544332222235556666666554    456788999999987666


Q ss_pred             EEeecCCcceEEEEEEeCCCCceEEEE--------------------ecCCCeEEEEEccCCCccceeeccCcccCeEEE
Q psy6859         129 MIKLDFTPLTVECIHYLGDAIPTAAVS--------------------DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLI  188 (261)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~  188 (261)
                      .+..+..-...-....+.++...+.+-                    +.-...|.-.|+. +++....+  .....+..+
T Consensus       117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~-tG~~~~v~--~~~~wlgH~  193 (386)
T PF14583_consen  117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK-TGERKVVF--EDTDWLGHV  193 (386)
T ss_dssp             EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT-T--EEEEE--EESS-EEEE
T ss_pred             EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC-CCceeEEE--ecCccccCc
Confidence            665543221112222344444211110                    0112345555666 55554444  356778889


Q ss_pred             EEcCCCCEEEEEcCC----Ce-EEEeeccc
Q psy6859         189 KFNPIYQVVVSVDKA----GI-LEYWSGYK  213 (261)
Q Consensus       189 ~~~~~~~~l~~~~~d----g~-i~iwd~~~  213 (261)
                      .|+|...-+++-+..    .. -+||-+++
T Consensus       194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINT  223 (386)
T ss_dssp             EEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred             ccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence            999977655544332    21 36676653

>KOG2079|consensus

Probab=97.56  E-value=0.00042  Score=59.01  Aligned_cols=60  Identities=25%  Similarity=0.326  Sum_probs=48.3

Q ss_pred             EEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ++.|+..|.+-..|+..+-.+...=+ .-..+|++++|+.+|+.++.|-.+|.|.+||+..
T Consensus       102 ivi~Ts~ghvl~~d~~~nL~~~~~ne-~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~  161 (1206)
T KOG2079|consen  102 IVIGTSHGHVLLSDMTGNLGPLHQNE-RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR  161 (1206)
T ss_pred             EEEEcCchhhhhhhhhcccchhhcCC-ccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence            77788889999999973333323332 4578999999999999999999999999999965

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.47  E-value=0.047  Score=45.55  Aligned_cols=154  Identities=14%  Similarity=0.122  Sum_probs=83.1

Q ss_pred             cceeEEEEeeCCCEEEEEe------CCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeee--------eecCC
Q psy6859          47 GVIHSICTNYNGTLLCTVA------SDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAA--------VSDQD  112 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~~------~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~s~~~  112 (261)
                      ..+...+++|+|+.++...      .|..-.||-...+.....+... .....-.++++++.++++.        .....
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            4678889999999887665      2444344433222222222211 1244455666666555541        00112


Q ss_pred             CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEE---EEccCCCc-cc---eeeccCcccCe
Q psy6859         113 SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHI---YDCKGNGT-PL---HVLDRLHTKPV  185 (261)
Q Consensus       113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i---~d~~~~~~-~~---~~~~~~~~~~v  185 (261)
                      .+.+.+.++..++...  .   ....+..+.|+||+...+++.   ++.|++   -... .+. .+   ..+.......+
T Consensus       429 ~gql~~~~vd~ge~~~--~---~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~-~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        429 TGQLARTPVDASAVAS--R---VPGPISELQLSRDGVRAAMII---GGKVYLAVVEQTE-DGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             CceEEEEeccCchhhh--c---cCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCC-CCceeecccEEeecccCCcc
Confidence            3445555555544332  1   233689999999999866655   467776   3322 332 11   11221233446


Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         186 VLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       186 ~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      .++.|.+++.++ ++..++.-.+|.+
T Consensus       500 ~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        500 VSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             ccceEecCCEEE-EEecCCCCceEEE
Confidence            889999999855 4444454555654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.41  E-value=0.0007  Score=35.19  Aligned_cols=34  Identities=12%  Similarity=0.134  Sum_probs=30.0

Q ss_pred             ccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859          46 LGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus        46 ~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      ...|..++|+|...+||.+..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356899999999999999999999999998 5554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.41  E-value=0.033  Score=42.30  Aligned_cols=216  Identities=13%  Similarity=0.079  Sum_probs=115.9

Q ss_pred             eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeec-----cCcc
Q psy6859          16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKL-----DFTP   90 (261)
Q Consensus        16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~-----~~~~   90 (261)
                      ++.+--..+.|.-|+..++.   ...+. +.+.+.++.....+..|+++..  .+.+++..++..+..+..     ....
T Consensus        39 L~w~DI~~~~i~r~~~~~g~---~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r  112 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGK---KRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNR  112 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCc---eEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCC
Confidence            45566666777778776542   22333 2344455555445556665543  356677655554332221     1122


Q ss_pred             eeEEEEeecCCceeeeee-----ec--CCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEE
Q psy6859          91 LTVECIHYLGDAIPTAAV-----SD--QDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVH  163 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~-----s~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  163 (261)
                      .....+.++|...+...-     ..  ..-|.++.+|. .+..++.+..  .-.....++|+||+.. ++++-+..+.|.
T Consensus       113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~--~~~~~NGla~SpDg~t-ly~aDT~~~~i~  188 (307)
T COG3386         113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD--DLTIPNGLAFSPDGKT-LYVADTPANRIH  188 (307)
T ss_pred             CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC--cEEecCceEECCCCCE-EEEEeCCCCeEE
Confidence            233445555543332211     00  11233444444 3433333332  1224478999999984 567777778899


Q ss_pred             EEEccC-CCcc-----ceeeccCcccCeEEEEEcCCCCEEEEEcCCC-eEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         164 IYDCKG-NGTP-----LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG-ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       164 i~d~~~-~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      -|++.. .+..     ...+. ...+..-.++...+|.+-+++-.+| .|.+|+.+                ++.+..+.
T Consensus       189 r~~~d~~~g~~~~~~~~~~~~-~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd----------------G~l~~~i~  251 (307)
T COG3386         189 RYDLDPATGPIGGRRGFVDFD-EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD----------------GKLLGEIK  251 (307)
T ss_pred             EEecCcccCccCCcceEEEcc-CCCCCCCceEEeCCCCEEEecccCCceEEEECCC----------------CcEEEEEE
Confidence            888761 1111     11111 2345566778888888665544444 89999873                56666666


Q ss_pred             CCccceeeeeEC-CCCceEEEee
Q psy6859         237 KNKTYPSGLSFS-PDGNKFVTIS  258 (261)
Q Consensus       237 ~~~~~v~~~~~s-~~~~~l~s~~  258 (261)
                      -....+++++|- |+.+.|...+
T Consensus       252 lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         252 LPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CCCCCCccceEeCCCcCEEEEEe
Confidence            665677788874 4455554443

>KOG3630|consensus

Probab=97.39  E-value=0.0043  Score=53.62  Aligned_cols=130  Identities=8%  Similarity=-0.006  Sum_probs=83.9

Q ss_pred             CCCCeEEEEEcCCCceee---E--E----eecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCc
Q psy6859         111 QDSSRVHIYDCKGNDMIN---M--I----KLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLH  181 (261)
Q Consensus       111 ~~d~~i~i~d~~~~~~~~---~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  181 (261)
                      +.+-.|..||+++...-.   .  +    .....+....++.|+|.-... .+....|+.|++..+......+..+  ..
T Consensus       121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n-~av~l~dlsl~V~~~~~~~~~v~s~--p~  197 (1405)
T KOG3630|consen  121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLN-SAVDLSDLSLRVKSTKQLAQNVTSF--PV  197 (1405)
T ss_pred             cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccch-hhhhccccchhhhhhhhhhhhhccc--Cc
Confidence            456688999998643211   1  1    112244566788888876532 4555678999998887334445555  46


Q ss_pred             ccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC-ccceeeeeECCCCceEEE
Q psy6859         182 TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN-KTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       182 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s  256 (261)
                      ....++++|+|.|+.++.|...|++.-|...-.             ....+...... ...|.+|+|-....+|++
T Consensus       198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-------------ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-------------IKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ccceeeEEeccccceeeEecCCCeEEEeecccc-------------eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            677899999999999999999999988875310             00111111111 367889999877776664

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.36  E-value=0.0097  Score=43.62  Aligned_cols=105  Identities=12%  Similarity=0.142  Sum_probs=71.2

Q ss_pred             ceEEEEEEeCCCCceEEEEecCCCe-EEEEEccCCCccceeeccCcccC--eEEEEEcCCCCEEEEEcC-----CCeEEE
Q psy6859         137 LTVECIHYLGDAIPTAAVSDQDSSH-VHIYDCKGNGTPLHVLDRLHTKP--VVLIKFNPIYQVVVSVDK-----AGILEY  208 (261)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-----dg~i~i  208 (261)
                      .+...+.++|.....+++. -.-|+ ..++|.. ..+...++. ..+..  --.=.|||||++|+..-.     .|.|-|
T Consensus        68 aR~Hgi~~~p~~~ravafA-RrPGtf~~vfD~~-~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGv  144 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFA-RRPGTFAMVFDPN-GAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGV  144 (366)
T ss_pred             cccCCeecCCCCcceEEEE-ecCCceEEEECCC-CCcCcEEEe-cccCceeecccccCCCCcEEEeecCCCCCCCceEEE
Confidence            3556788888777654443 33444 6789988 665555553 22111  112369999999977543     378999


Q ss_pred             eecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         209 WSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      ||.+.              ..+.+.++..|.-....+.|.+||+.|+.+.
T Consensus       145 Yd~r~--------------~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         145 YDARE--------------GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             Eeccc--------------ccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            99863              2455677788888889999999999998764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.33  E-value=0.00094  Score=34.72  Aligned_cols=32  Identities=9%  Similarity=0.115  Sum_probs=28.9

Q ss_pred             cccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       181 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      ....|..++|+|...+||.+..+|.|.++.+.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            45679999999999999999999999999873

>KOG2444|consensus

Probab=97.24  E-value=0.001  Score=46.72  Aligned_cols=124  Identities=6%  Similarity=-0.078  Sum_probs=67.2

Q ss_pred             CCCCeEEEEEcCCCceeeEEeecCCcceEEEE-EEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeE-EE
Q psy6859         111 QDSSRVHIYDCKGNDMINMIKLDFTPLTVECI-HYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVV-LI  188 (261)
Q Consensus       111 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~-~~  188 (261)
                      +.++.|.-++++..+....-..     .+.+. ....-...  +++|+.+|.|++|.....+.....+. .....|- .+
T Consensus        37 sa~~~v~~~~~~k~k~s~rse~-----~~~e~~~v~~~~~~--~~vG~~dg~v~~~n~n~~g~~~d~~~-s~~e~i~~~I  108 (238)
T KOG2444|consen   37 SADGLVRERKVRKHKESCRSER-----FIDEGQRVVTASAK--LMVGTSDGAVYVFNWNLEGAHSDRVC-SGEESIDLGI  108 (238)
T ss_pred             cCCcccccchhhhhhhhhhhhh-----hhhcceeecccCce--EEeecccceEEEecCCccchHHHhhh-cccccceecc
Confidence            6788888888775432111110     11111 11111111  77888899999998863333333332 2222222 22


Q ss_pred             EEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc-cceeeeeECCCCceEEEe
Q psy6859         189 KFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK-TYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       189 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~  257 (261)
                      .--.++.+..++..||.|+.|++..               .+.+.....|. .++..+..+..++.|+.+
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p---------------~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a  163 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKP---------------NKVLGYVGQHNFESGEELIVVGSDEFLKIA  163 (238)
T ss_pred             ccccccceeEEeccCCceeeecccc---------------CceeeeeccccCCCcceeEEecCCceEEee
Confidence            2333445778899999999999843               34444444455 455555555556666655

>KOG2280|consensus

Probab=97.22  E-value=0.079  Score=44.26  Aligned_cols=175  Identities=13%  Similarity=0.154  Sum_probs=87.6

Q ss_pred             eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeec--c--CcceeEEEEeecC
Q psy6859          25 HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKL--D--FTPLTVECIHYLG  100 (261)
Q Consensus        25 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~--~--~~~~~~~~~~~~~  100 (261)
                      .|+|++...   +++..+.-..+.+..+.|+.+. .|+....+|++.+|++ .|+.+.....  .  ...+.-+.+..  
T Consensus        65 ~I~If~~sG---~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~-~ge~ie~~svg~e~~~~~I~ec~~f~--  137 (829)
T KOG2280|consen   65 YIRIFNISG---QLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGL-LGEFIESNSVGFESQMSDIVECRFFH--  137 (829)
T ss_pred             eEEEEeccc---cchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeec-chhhhcccccccccccCceeEEEEec--
Confidence            466777654   3333333333578899998776 4666689999999998 4444444221  1  11122223322  


Q ss_pred             CceeeeeeecCCCCeEEEEEcCCCceeeEEee-cCCcceEEEEEEeCCCC-ceEEEEec-CCCeEEEEEccCCCccceee
Q psy6859         101 DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-DFTPLTVECIHYLGDAI-PTAAVSDQ-DSSHVHIYDCKGNGTPLHVL  177 (261)
Q Consensus       101 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~-~d~~i~i~d~~~~~~~~~~~  177 (261)
                      +.++..    ..+|.+.+-+-.....+..+.. +.......|+...++.. ..+++--. ..+ ..++-..........+
T Consensus       138 ~GVavl----t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  138 NGVAVL----TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHAL  212 (829)
T ss_pred             CceEEE----ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccccccc
Confidence            334444    4566665544322222222221 22222223444333322 11111100 000 1112121111222233


Q ss_pred             ccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         178 DRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       178 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      . .....+..+..||+.++|+.-...|.|.+-+.+
T Consensus       213 ~-~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D  246 (829)
T KOG2280|consen  213 S-WPNSSVVKISVSPNRRFLALYTETGKIWVVSID  246 (829)
T ss_pred             C-CCCceEEEEEEcCCcceEEEEecCCcEEEEecc
Confidence            2 234667889999999999999999988887764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.21  E-value=0.077  Score=42.47  Aligned_cols=196  Identities=11%  Similarity=0.069  Sum_probs=100.1

Q ss_pred             eEEEEEcC-CCeEEEe-cC----CCeEEEEeccCCceeeeE-EeeccccceeEEEEeeCCCEEEEEeCCC----------
Q psy6859           6 ITHVVVTK-TDFVITA-SN----DGHIKFWKKQEEGIEFVK-HFRSHLGVIHSICTNYNGTLLCTVASDK----------   68 (261)
Q Consensus         6 v~~~~~~~-~~~l~s~-~~----d~~i~iw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg----------   68 (261)
                      +....++| ++++|.+ +.    ...+++.|++++  +.+. .+...  ....+.|.++++.|+-...+.          
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            34678889 8877643 22    246999999987  4433 22311  122399999988776655332          


Q ss_pred             -cEEEEEcccccee--eeeeccCcc--eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC----ceeeEEeecCCcceE
Q psy6859          69 -AMKVFDVINFDMI--NMIKLDFTP--LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN----DMINMIKLDFTPLTV  139 (261)
Q Consensus        69 -~v~~wd~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~  139 (261)
                       .|+.|.+.+...-  ..+.....+  ...+..+.+++.++....++.....+.+.|+...    .....+... .+...
T Consensus       202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~  280 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR-EDGVE  280 (414)
T ss_dssp             EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES-SSS-E
T ss_pred             cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC-CCceE
Confidence             3778887765432  333333333  2344556677766554333222378889998875    223333322 22233


Q ss_pred             EEEEEeCCCCceEEEEe--cCCCeEEEEEccCCCcc---ceeeccCccc--CeEEEEEcCCCCEE-EEEcCCC--eEEEe
Q psy6859         140 ECIHYLGDAIPTAAVSD--QDSSHVHIYDCKGNGTP---LHVLDRLHTK--PVVLIKFNPIYQVV-VSVDKAG--ILEYW  209 (261)
Q Consensus       140 ~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~---~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~dg--~i~iw  209 (261)
                      ..+....+.  +++.+.  ...+.|...++. ....   ...+. .+..  .+..+..  .+.+| +....++  .|+++
T Consensus       281 ~~v~~~~~~--~yi~Tn~~a~~~~l~~~~l~-~~~~~~~~~~l~-~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~  354 (414)
T PF02897_consen  281 YYVDHHGDR--LYILTNDDAPNGRLVAVDLA-DPSPAEWWTVLI-PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVY  354 (414)
T ss_dssp             EEEEEETTE--EEEEE-TT-TT-EEEEEETT-STSGGGEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred             EEEEccCCE--EEEeeCCCCCCcEEEEeccc-ccccccceeEEc-CCCCceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence            344444332  234443  224567777776 3332   22333 4444  3444444  44444 4444444  57788


Q ss_pred             ecc
Q psy6859         210 SGY  212 (261)
Q Consensus       210 d~~  212 (261)
                      ++.
T Consensus       355 ~~~  357 (414)
T PF02897_consen  355 DLD  357 (414)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2079|consensus

Probab=97.19  E-value=0.0021  Score=55.04  Aligned_cols=82  Identities=17%  Similarity=0.250  Sum_probs=62.9

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeE
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTV   93 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   93 (261)
                      +..++.|+..|.+...|+... ..+...-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..+.+|...
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            446788888888888887652 1222222334589999999999999999999999999999999999988877776655


Q ss_pred             EEE
Q psy6859          94 ECI   96 (261)
Q Consensus        94 ~~~   96 (261)
                      +..
T Consensus       178 vi~  180 (1206)
T KOG2079|consen  178 VIF  180 (1206)
T ss_pred             EEE
Confidence            444

>PHA02713 hypothetical protein; Provisional

Probab=97.18  E-value=0.11  Score=43.39  Aligned_cols=95  Identities=6%  Similarity=0.048  Sum_probs=46.2

Q ss_pred             eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC------CcEEEEEccccceeeeeeccCcceeEEEEee
Q psy6859          25 HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD------KAMKVFDVINFDMINMIKLDFTPLTVECIHY   98 (261)
Q Consensus        25 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~   98 (261)
                      .+..||..+..+..+..+...... .+++ .-++..++.|+.+      ..+..||..+.+....-..+...........
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a-~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASA-IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEE-EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            466788777644443333211111 1222 2366677777753      3477888877654322222211111122222


Q ss_pred             cCCceeeeeeecCCC-----CeEEEEEcCCCc
Q psy6859          99 LGDAIPTAAVSDQDS-----SRVHIYDCKGND  125 (261)
Q Consensus        99 ~~~~~~~~~~s~~~d-----~~i~i~d~~~~~  125 (261)
                       ++.++++   |+.+     ..+..||..+.+
T Consensus       351 -~g~IYvi---GG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        351 -DDTIYAI---GGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             -CCEEEEE---CCcCCCCCCceEEEEECCCCe
Confidence             3444443   2332     358889988764

>PHA03098 kelch-like protein; Provisional

Probab=97.15  E-value=0.11  Score=43.11  Aligned_cols=186  Identities=11%  Similarity=0.051  Sum_probs=83.3

Q ss_pred             CCeEEEecCCC------eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----CcEEEEEccccceee
Q psy6859          14 TDFVITASNDG------HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----KAMKVFDVINFDMIN   82 (261)
Q Consensus        14 ~~~l~s~~~d~------~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~   82 (261)
                      +..++.|+.++      .+..||..+..+.....+....... ++ ..-+++.++.|+.+     ..+..||..+++...
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~-~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GV-TVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eE-EEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            44566666543      4667777765333332222111111 12 22366777788765     347778887665433


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCC------CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQD------SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                      .-..+........... ++.+...   |+.      -..+..||+.+.+-...-...... ...++....+.   +++.|
T Consensus       373 ~~~lp~~r~~~~~~~~-~~~iYv~---GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~~~~---iyv~G  444 (534)
T PHA03098        373 EPPLIFPRYNPCVVNV-NNLIYVI---GGISKNDELLKTVECFSLNTNKWSKGSPLPISH-YGGCAIYHDGK---IYVIG  444 (534)
T ss_pred             CCCcCcCCccceEEEE-CCEEEEE---CCcCCCCcccceEEEEeCCCCeeeecCCCCccc-cCceEEEECCE---EEEEC
Confidence            2222211111111222 3344333   221      146888998876432221111111 11222222322   24445


Q ss_pred             cCC--------CeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeeccc
Q psy6859         157 QDS--------SHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYK  213 (261)
Q Consensus       157 ~~d--------~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~  213 (261)
                      +.+        ..+.+||.. +.+  .+..+. ........+.+  +++.++.|+.+     ..+.+||+.+
T Consensus       445 G~~~~~~~~~~~~v~~yd~~-~~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        445 GISYIDNIKVYNIVESYNPV-TNKWTELSSLN-FPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CccCCCCCcccceEEEecCC-CCceeeCCCCC-cccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence            432        237888886 432  222221 11111112222  66666666644     4678888755

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.14  E-value=0.07  Score=40.67  Aligned_cols=161  Identities=15%  Similarity=0.147  Sum_probs=95.3

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEE---eeccccce-eEEEEeeCCCEEEEEeCCCcEEEEEccccce--eeeeecc
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKH---FRSHLGVI-HSICTNYNGTLLCTVASDKAMKVFDVINFDM--INMIKLD   87 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~---~~~~~~~v-~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~   87 (261)
                      ++-+.+-+.||.+.-..++..+....+.   |..-..++ ..-++...+..++--+.+|.|+--|+.....  ...+..-
T Consensus       147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~  226 (342)
T PF06433_consen  147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL  226 (342)
T ss_dssp             TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred             CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence            4567888999999999888644332211   11122222 2334444444555568899998888865432  2222211


Q ss_pred             C----------cceeEEEEeecCCceeeeeeecC----CC--CeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCce
Q psy6859          88 F----------TPLTVECIHYLGDAIPTAAVSDQ----DS--SRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPT  151 (261)
Q Consensus        88 ~----------~~~~~~~~~~~~~~~~~~~~s~~----~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (261)
                      .          .......+++..+.++.+.-.+.    .+  ..|-++|+.+++.+..+.+..   .+.++..+.+....
T Consensus       227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~  303 (342)
T PF06433_consen  227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKPL  303 (342)
T ss_dssp             -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-E
T ss_pred             CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCcE
Confidence            0          11234455555555554432221    11  357788999999999988643   56688999888876


Q ss_pred             EEEEecCCCeEEEEEccCCCccceeec
Q psy6859         152 AAVSDQDSSHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       152 ~~~~~~~d~~i~i~d~~~~~~~~~~~~  178 (261)
                      +++....++.+.+||.. +++++++++
T Consensus       304 L~~~~~~~~~l~v~D~~-tGk~~~~~~  329 (342)
T PF06433_consen  304 LYALSAGDGTLDVYDAA-TGKLVRSIE  329 (342)
T ss_dssp             EEEEETTTTEEEEEETT-T--EEEEE-
T ss_pred             EEEEcCCCCeEEEEeCc-CCcEEeehh
Confidence            66555668999999999 999999886

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.13  E-value=0.066  Score=40.14  Aligned_cols=143  Identities=14%  Similarity=0.104  Sum_probs=82.8

Q ss_pred             eCCCEEEEEeCCCcEEEEEccc-cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE----
Q psy6859          56 YNGTLLCTVASDKAMKVFDVIN-FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI----  130 (261)
Q Consensus        56 ~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~----  130 (261)
                      ..++.|+.|..+| +.+++... ....+..+.  .++.-+.+-+.-+.++..     .|+.+.++++..-......    
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvL-----sd~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVL-----SDGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEE-----cCCccEEEEchhhcccccccccc
Confidence            4567899998888 89999832 233332221  124445555555666665     4699999998865433311    


Q ss_pred             ---------eecCCcceEEEEE--EeCCCCceEEEEecCCCeEEEEEccCC---C-ccceeeccCcccCeEEEEEcCCCC
Q psy6859         131 ---------KLDFTPLTVECIH--YLGDAIPTAAVSDQDSSHVHIYDCKGN---G-TPLHVLDRLHTKPVVLIKFNPIYQ  195 (261)
Q Consensus       131 ---------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~---~-~~~~~~~~~~~~~v~~~~~~~~~~  195 (261)
                               ... ....+..++  -...+.. .++.+. ..+|.+|.....   . +..+++.  ....+.+++|.  ++
T Consensus        77 ~~~~~~~~~~~~-~~~~v~~f~~~~~~~~~~-~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~  149 (275)
T PF00780_consen   77 FPKSRSLPTKLP-ETKGVSFFAVNGGHEGSR-RLCVAV-KKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFL--GN  149 (275)
T ss_pred             cccccccccccc-ccCCeeEEeeccccccce-EEEEEE-CCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEe--CC
Confidence                     111 111233333  1122222 233333 558999988732   1 4556663  56788999998  55


Q ss_pred             EEEEEcCCCeEEEeecccc
Q psy6859         196 VVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       196 ~l~~~~~dg~i~iwd~~~~  214 (261)
                      .|+.|..++ ..+.|+.++
T Consensus       150 ~i~v~~~~~-f~~idl~~~  167 (275)
T PF00780_consen  150 KICVGTSKG-FYLIDLNTG  167 (275)
T ss_pred             EEEEEeCCc-eEEEecCCC
Confidence            677776555 788888743

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.07  E-value=0.14  Score=42.85  Aligned_cols=187  Identities=13%  Similarity=0.139  Sum_probs=97.6

Q ss_pred             CCeEEEEEcC-CCeEEEec------CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC---------
Q psy6859           4 SPITHVVVTK-TDFVITAS------NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD---------   67 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~------~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------   67 (261)
                      ..+...+++| ++.++..-      .|..-.||-...++ .......+.  ....-.|+|||+.+++....         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence            3567888999 77665443      34444455433221 222223332  37788999998887776532         


Q ss_pred             ---CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEE---EEcCCCceeeE---EeecC-Ccc
Q psy6859          68 ---KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHI---YDCKGNDMINM---IKLDF-TPL  137 (261)
Q Consensus        68 ---g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i---~d~~~~~~~~~---~~~~~-~~~  137 (261)
                         +.+.+.++..++...  .. ...+....++++|..++.+     .++.|.+   -....+. ...   ..... ...
T Consensus       427 ~~~gql~~~~vd~ge~~~--~~-~g~Issl~wSpDG~RiA~i-----~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~  497 (591)
T PRK13616        427 PATGQLARTPVDASAVAS--RV-PGPISELQLSRDGVRAAMI-----IGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGD  497 (591)
T ss_pred             CCCceEEEEeccCchhhh--cc-CCCcCeEEECCCCCEEEEE-----ECCEEEEEEEEeCCCCc-eeecccEEeecccCC
Confidence               223223333332222  11 2347778899999988876     2467776   4434443 111   11111 122


Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCCCEEEEEcCCCeEE
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAGILE  207 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  207 (261)
                      .+..+.|.+++. ++  .+..++.-.+|.+.-.+.....+. .....++..++=++.  .|+....++.+.
T Consensus       498 ~~~~l~W~~~~~-L~--V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        498 TAVSLDWRTGDS-LV--VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ccccceEecCCE-EE--EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            357788999987 22  323333334454442333322222 123567777877763  455666677443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.054  Score=37.97  Aligned_cols=102  Identities=18%  Similarity=0.108  Sum_probs=61.8

Q ss_pred             CCCEEEEEeCCC--cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC
Q psy6859          57 NGTLLCTVASDK--AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF  134 (261)
Q Consensus        57 ~~~~l~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~  134 (261)
                      ++.++.+.+.-|  .|++||+.+++.+.+-++.......--+..-++.+..+.   -.++.-..+|.++.+.+..+....
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT---w~egvaf~~d~~t~~~lg~~~y~G  131 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT---WKEGVAFKYDADTLEELGRFSYEG  131 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE---eccceeEEEChHHhhhhcccccCC
Confidence            556777777544  699999999998887766532222222333455555441   368888899999888777766543


Q ss_pred             CcceEEEEEEeCCCCceEEEEecCCCeEEEEEcc
Q psy6859         135 TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCK  168 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  168 (261)
                         .-..++.  ++..  ++.+....+++.-|..
T Consensus       132 ---eGWgLt~--d~~~--LimsdGsatL~frdP~  158 (262)
T COG3823         132 ---EGWGLTS--DDKN--LIMSDGSATLQFRDPK  158 (262)
T ss_pred             ---cceeeec--CCcc--eEeeCCceEEEecCHH
Confidence               2244443  3333  4443334566666655

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.98  E-value=0.13  Score=41.13  Aligned_cols=161  Identities=12%  Similarity=0.053  Sum_probs=87.0

Q ss_pred             eeEEEEeeCCCEEEEE-eCCC----cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeec-CC------CCeE
Q psy6859          49 IHSICTNYNGTLLCTV-ASDK----AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QD------SSRV  116 (261)
Q Consensus        49 v~~~~~~~~~~~l~s~-~~dg----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~------d~~i  116 (261)
                      +....++|++++++-+ +..|    .++++|+.+++.+...-.. .....+.+.++++.++...+-. ..      ...|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3467889999988855 3334    5999999999776542111 1122256666766665553321 12      4458


Q ss_pred             EEEEcCCCcee--eEEeecCCcceEEEEEEeCCCCceEEEEecCC--CeEEEEEccCCC----ccceeeccCcccCe-EE
Q psy6859         117 HIYDCKGNDMI--NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS--SHVHIYDCKGNG----TPLHVLDRLHTKPV-VL  187 (261)
Q Consensus       117 ~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~i~i~d~~~~~----~~~~~~~~~~~~~v-~~  187 (261)
                      ..|.+.+....  ..++....+.....+..++++.++++.+.+..  ..+++.|+. ..    .....+. .....+ ..
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~-~~~~~~~~~~~l~-~~~~~~~~~  282 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD-DGGSPDAKPKLLS-PREDGVEYY  282 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC-CTTTSS-SEEEEE-ESSSS-EEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc-ccCCCcCCcEEEe-CCCCceEEE
Confidence            88888776443  44444433333678888999987655444433  468888887 42    2333333 233333 33


Q ss_pred             EEEcCCCCEEEEEc---CCCeEEEeeccc
Q psy6859         188 IKFNPIYQVVVSVD---KAGILEYWSGYK  213 (261)
Q Consensus       188 ~~~~~~~~~l~~~~---~dg~i~iwd~~~  213 (261)
                      +... .+.+++...   ..+.|.-.++..
T Consensus       283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~  310 (414)
T PF02897_consen  283 VDHH-GDRLYILTNDDAPNGRLVAVDLAD  310 (414)
T ss_dssp             EEEE-TTEEEEEE-TT-TT-EEEEEETTS
T ss_pred             EEcc-CCEEEEeeCCCCCCcEEEEecccc
Confidence            3333 444443332   335565566543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.92  E-value=0.097  Score=38.47  Aligned_cols=182  Identities=10%  Similarity=0.030  Sum_probs=103.8

Q ss_pred             EEEEEcC-CCeEEEecCCC--eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859           7 THVVVTK-TDFVITASNDG--HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM   83 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~   83 (261)
                      ..+.|.+ +.++-+.+.-|  .|+.+|+.++.......+.. .--=-.++...| +...-.=.++...+||..+.+.+.+
T Consensus        48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECC-EEEEEEecCCeEEEEccccceEEEE
Confidence            3566634 66666776666  78888988873332333321 111133444333 3444445789999999999999998


Q ss_pred             eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc---eEEEEEEeCCCCceEEEEecCCC
Q psy6859          84 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL---TVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      +...... ..  +..+++.++..    .....+.++|..+.+....+.......   .+.-+.+....   +.+---...
T Consensus       126 ~~y~~EG-WG--Lt~dg~~Li~S----DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~---IyANVW~td  195 (264)
T PF05096_consen  126 FPYPGEG-WG--LTSDGKRLIMS----DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGK---IYANVWQTD  195 (264)
T ss_dssp             EE-SSS---E--EEECSSCEEEE-----SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTE---EEEEETTSS
T ss_pred             EecCCcc-eE--EEcCCCEEEEE----CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCE---EEEEeCCCC
Confidence            8866432 22  22566666655    678899999999888877776543332   34445555322   244444456


Q ss_pred             eEEEEEccCCCccceeec-----c---------CcccCeEEEEEcCCCCEE-EEEc
Q psy6859         161 HVHIYDCKGNGTPLHVLD-----R---------LHTKPVVLIKFNPIYQVV-VSVD  201 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~-----~---------~~~~~v~~~~~~~~~~~l-~~~~  201 (261)
                      .|...|.. +++.+..+.     .         ....-.+.|+++|..+.| ++|-
T Consensus       196 ~I~~Idp~-tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  196 RIVRIDPE-TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEEETT-T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             eEEEEeCC-CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            67777777 776655442     0         113457999999887755 5554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.89  E-value=0.11  Score=38.79  Aligned_cols=201  Identities=13%  Similarity=0.092  Sum_probs=111.0

Q ss_pred             EEEEEcC-CCeEEEecCCCeEEEEecc-----CCceeeeEEeec-----cccceeEEEEeeCCC------------EEEE
Q psy6859           7 THVVVTK-TDFVITASNDGHIKFWKKQ-----EEGIEFVKHFRS-----HLGVIHSICTNYNGT------------LLCT   63 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~d~~i~iw~~~-----~~~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~s   63 (261)
                      +.|+++| +..-++....+...+||..     .....++..+..     .....+.+.|+....            .++.
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif  105 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF  105 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence            5789999 7777777778899999987     211133334332     124567777764322            3677


Q ss_pred             EeCCCcEEEEEccccce---eeeeeccC----cceeEEEEe--ecCCceeeeeeecCCCCeEEEEEcCCCcee--eEE--
Q psy6859          64 VASDKAMKVFDVINFDM---INMIKLDF----TPLTVECIH--YLGDAIPTAAVSDQDSSRVHIYDCKGNDMI--NMI--  130 (261)
Q Consensus        64 ~~~dg~v~~wd~~~~~~---~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~--~~~--  130 (261)
                      +++||+|.-|...-+..   ...+....    ....-+++.  ..++.+++.-|   ..++|.+||-.=....  ..+  
T Consensus       106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g~F~D  182 (336)
T TIGR03118       106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPGSFID  182 (336)
T ss_pred             EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCCCccC
Confidence            88999999998543222   11111111    111122222  22344444422   4788888874422111  001  


Q ss_pred             ---eecCCcceEE------EEEE---eCCCCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcC-----
Q psy6859         131 ---KLDFTPLTVE------CIHY---LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNP-----  192 (261)
Q Consensus       131 ---~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~-----  192 (261)
                         .....|-.|.      -+.|   .++...  -+.|..-|.|-+||.  .++.++++. .+.-...+.|+..|     
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d--~v~G~G~G~VdvFd~--~G~l~~r~as~g~LNaPWG~a~APa~FG~  258 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRND--EVAGAGLGYVNVFTL--NGQLLRRVASSGRLNAPWGLAIAPESFGS  258 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccc--cccCCCcceEEEEcC--CCcEEEEeccCCcccCCceeeeChhhhCC
Confidence               1111111111      1111   222222  344555789999998  578888884 12234456787766     


Q ss_pred             -CCCEEEEEcCCCeEEEeecccc
Q psy6859         193 -IYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       193 -~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                       .+.+|+---.||+|..||..++
T Consensus       259 ~sg~lLVGNFGDG~InaFD~~sG  281 (336)
T TIGR03118       259 LSGALLVGNFGDGTINAYDPQSG  281 (336)
T ss_pred             CCCCeEEeecCCceeEEecCCCC
Confidence             4567777778999999998653

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.87  E-value=0.066  Score=44.55  Aligned_cols=99  Identities=14%  Similarity=0.145  Sum_probs=61.9

Q ss_pred             EEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc--CCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN--PIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDT  230 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  230 (261)
                      .+..+....+.|||.+ .+.....-.......|.++.|.  |+++.+++.+....|.+|--....+... .     ....
T Consensus        44 a~V~~~~~~LtIWD~~-~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~-~-----p~w~  116 (631)
T PF12234_consen   44 AVVDSSRSELTIWDTR-SGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK-G-----PSWA  116 (631)
T ss_pred             EEEECCCCEEEEEEcC-CcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC-C-----cccc
Confidence            4445556789999998 6553332211357889999885  6888888878888899986432111110 0     1112


Q ss_pred             ceeec--CCCc-cceeeeeECCCCceEEEee
Q psy6859         231 DLFEF--AKNK-TYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       231 ~~~~~--~~~~-~~v~~~~~s~~~~~l~s~~  258 (261)
                      +++.+  ..|+ .+|.+..|.++|.+++.+|
T Consensus       117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG  147 (631)
T PF12234_consen  117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGSG  147 (631)
T ss_pred             eeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence            22222  2333 5789999999998887665

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.82  E-value=0.14  Score=38.82  Aligned_cols=171  Identities=10%  Similarity=0.049  Sum_probs=80.3

Q ss_pred             EEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeee
Q psy6859          28 FWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAA  107 (261)
Q Consensus        28 iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (261)
                      ||...+.+..-......-.+.+..+.-++||+++++++.-..+.-||.-.......-......+..+.+.+++...+ + 
T Consensus       126 iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~-  203 (302)
T PF14870_consen  126 IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-L-  203 (302)
T ss_dssp             EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-E-
T ss_pred             EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-E-
Confidence            44444444344444444557788888899999888876655566777543222222223345677777777755433 3 


Q ss_pred             eecCCCCeEEEEEc-CCCceeeE--EeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeecc--Ccc
Q psy6859         108 VSDQDSSRVHIYDC-KGNDMINM--IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR--LHT  182 (261)
Q Consensus       108 ~s~~~d~~i~i~d~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~  182 (261)
                         ...+.|+.=+. ...+.-..  .........+..++|.++..  +.++|+ .|.+. .... .++.-+..+.  .-.
T Consensus       204 ---~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~--~wa~gg-~G~l~-~S~D-gGktW~~~~~~~~~~  275 (302)
T PF14870_consen  204 ---ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE--IWAVGG-SGTLL-VSTD-GGKTWQKDRVGENVP  275 (302)
T ss_dssp             ---ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS---EEEEES-TT-EE-EESS-TTSS-EE-GGGTTSS
T ss_pred             ---eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC--EEEEeC-CccEE-EeCC-CCccceECccccCCC
Confidence               47777877762 22111111  11111233578899998875  255554 55433 3333 5544444321  234


Q ss_pred             cCeEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859         183 KPVVLIKFNPIYQVVVSVDKAGILEYW  209 (261)
Q Consensus       183 ~~v~~~~~~~~~~~l~~~~~dg~i~iw  209 (261)
                      ..++.+.|.++.+-++.| .+|.|.-|
T Consensus       276 ~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  276 SNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             S---EEEEEETTEEEEE--STTEEEEE
T ss_pred             CceEEEEEcCCCceEEEC-CCcEEEEe
Confidence            568889998766655655 57876544

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.72  E-value=0.13  Score=41.94  Aligned_cols=148  Identities=15%  Similarity=0.186  Sum_probs=82.3

Q ss_pred             CeEEEEEcCCC-eEEEec--CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC----CCEEEEEeCCCcEEEEEccc
Q psy6859           5 PITHVVVTKTD-FVITAS--NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN----GTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         5 ~v~~~~~~~~~-~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~dg~v~~wd~~~   77 (261)
                      +|..++|..|+ .+++.-  .+|.+++     ++...+..|.    .|..+.|.|-    ...+++......|.+|.+..
T Consensus        21 PvhGlaWTDGkqVvLT~L~l~~gE~kf-----Gds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   21 PVHGLAWTDGKQVVLTDLQLHNGEPKF-----GDSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             cccceEecCCCEEEEEeeeeeCCcccc-----CCccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            67788888854 344432  2233322     1113444444    4899999874    32455556778999998752


Q ss_pred             -----cceeeeee--c----cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC
Q psy6859          78 -----FDMINMIK--L----DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG  146 (261)
Q Consensus        78 -----~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (261)
                           ++.+....  .    +--+ ..+.|+|...-+...    .....=.+++++........... ..+.|.|.+|.+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLp-QGCVWHPk~~iL~VL----T~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~  165 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLP-QGCVWHPKKAILTVL----TARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTK  165 (671)
T ss_pred             CccccccceeeeeeeccCCcccCC-CcccccCCCceEEEE----ecCceeEeeeeeeCCceEEEecc-CCceEEEEEecC
Confidence                 22222211  1    1112 234455655444433    23333345565544333333332 455899999999


Q ss_pred             CCCceEEEEecCCCeEEEEEcc
Q psy6859         147 DAIPTAAVSDQDSSHVHIYDCK  168 (261)
Q Consensus       147 ~~~~~~~~~~~~d~~i~i~d~~  168 (261)
                      ||.+++++.|+ .=.-++||-.
T Consensus       166 DG~RLVVAvGS-sLHSyiWd~~  186 (671)
T PF15390_consen  166 DGQRLVVAVGS-SLHSYIWDSA  186 (671)
T ss_pred             cCCEEEEEeCC-eEEEEEecCc
Confidence            99998777776 4556788854

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.48  E-value=0.23  Score=36.97  Aligned_cols=163  Identities=15%  Similarity=0.083  Sum_probs=97.2

Q ss_pred             eeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccC--cceeEEEEeecCCceeeeeeecCCCCeEEEE
Q psy6859          42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDF--TPLTVECIHYLGDAIPTAAVSDQDSSRVHIY  119 (261)
Q Consensus        42 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~  119 (261)
                      +.+-...+.++.|+|+.+.|++......-.++=..+|+.++++.+..  .+..+ .+-..+...++-    -.++.+.++
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~I-eyig~n~fvi~d----ER~~~l~~~  155 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETI-EYIGGNQFVIVD----ERDRALYLF  155 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHe-EEecCCEEEEEe----hhcceEEEE
Confidence            34455669999999999999988888887788777899999877543  22222 222233333222    456677776


Q ss_pred             EcCCCceee-----EEeec--CC-cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccc--eeeccCc-------c
Q psy6859         120 DCKGNDMIN-----MIKLD--FT-PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPL--HVLDRLH-------T  182 (261)
Q Consensus       120 d~~~~~~~~-----~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~-------~  182 (261)
                      .+.......     .+.+.  .+ ......++|.|....  +...-+..-+.||........+  .... .+       -
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~--l~~aKEr~P~~I~~~~~~~~~l~~~~~~-~~~~~~~~f~  232 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR--LFVAKERNPIGIFEVTQSPSSLSVHASL-DPTADRDLFV  232 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCce--EEEEEccCCcEEEEEecCCccccccccc-CcccccceEe
Confidence            665442111     22221  11 346788999999887  4444455566666665121111  1111 11       2


Q ss_pred             cCeEEEEEcCC-CCEEEEEcCCCeEEEeecc
Q psy6859         183 KPVVLIKFNPI-YQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       183 ~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~  212 (261)
                      ..|.++.|++. +.+|+.+.+++.+.-.|..
T Consensus       233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             eccccceecCCCCcEEEEecCCceEEEEecC
Confidence            34677888875 4466777788888777764

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.47  E-value=0.13  Score=40.85  Aligned_cols=90  Identities=13%  Similarity=0.084  Sum_probs=60.3

Q ss_pred             eeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEee--cC--------------Cceee
Q psy6859          42 FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHY--LG--------------DAIPT  105 (261)
Q Consensus        42 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~--------------~~~~~  105 (261)
                      +......+.+++.+|++++.++...=|.|.++|+.++..++.++.-.. ..+.++..  ..              +....
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd-Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD-AQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc-ceEEEEEeecccccccccccccCCCCcceEE
Confidence            333445688999999999888888889999999999988887763322 22222211  11              11222


Q ss_pred             eeeecCCCCeEEEEEcCCCceeeEEee
Q psy6859         106 AAVSDQDSSRVHIYDCKGNDMINMIKL  132 (261)
Q Consensus       106 ~~~s~~~d~~i~i~d~~~~~~~~~~~~  132 (261)
                      +++-.-.-|.|.+|.++.+..+..+..
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            223346789999999999877666654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.39  E-value=0.26  Score=36.56  Aligned_cols=141  Identities=11%  Similarity=0.056  Sum_probs=87.7

Q ss_pred             eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe----cCCCeEEEEEccCCCccceeeccCcccCeEEEEE
Q psy6859         115 RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD----QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKF  190 (261)
Q Consensus       115 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  190 (261)
                      ...++|..+.+....+.........--=.|+|++.++ .++-    ...|.|-+||.+...+.+.++. .|.-....+.+
T Consensus        92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~L-YATEndfd~~rGViGvYd~r~~fqrvgE~~-t~GiGpHev~l  169 (366)
T COG3490          92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLL-YATENDFDPNRGVIGVYDAREGFQRVGEFS-THGIGPHEVTL  169 (366)
T ss_pred             eEEEECCCCCcCcEEEecccCceeecccccCCCCcEE-EeecCCCCCCCceEEEEecccccceecccc-cCCcCcceeEE
Confidence            4567898888776666544333333334588999852 3332    2246799999985557778887 78888889999


Q ss_pred             cCCCCEEEEEcCCCeEEEe-eccccccc----CCeeeeeecccccceee--cC--CCccceeeeeECCCCceEEEeec
Q psy6859         191 NPIYQVVVSVDKAGILEYW-SGYKQEFK----FPKCVHFESKLDTDLFE--FA--KNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       191 ~~~~~~l~~~~~dg~i~iw-d~~~~~~~----~~~~~~~~~~~~~~~~~--~~--~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      .+||+.|+.+.  |-|..- |....+..    .|+..-.+..++..+.+  +.  .+...|..++..+||..++.+-.
T Consensus       170 m~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy  245 (366)
T COG3490         170 MADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY  245 (366)
T ss_pred             ecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence            99999888764  445554 32211111    12233333345555432  22  35567888999999987776543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.32  E-value=0.091  Score=42.07  Aligned_cols=129  Identities=9%  Similarity=0.118  Sum_probs=81.6

Q ss_pred             cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceE-----EEEecCCCeEEEEEccCCCccceeeccCcccC
Q psy6859         110 DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTA-----AVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKP  184 (261)
Q Consensus       110 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  184 (261)
                      |.....++-.|++.++.+.....+..   + -+.|.|.....-     -+.|-.+..|.-.|.+..+..+...+  ....
T Consensus       486 g~~~~kLykmDIErGkvveeW~~~dd---v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e--sKdY  559 (776)
T COG5167         486 GGERDKLYKMDIERGKVVEEWDLKDD---V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE--SKDY  559 (776)
T ss_pred             CCCcccceeeecccceeeeEeecCCc---c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee--ehhc
Confidence            45556777778888888888876543   1 456666543110     23444566777778775554444442  3333


Q ss_pred             eEEEEEcC----CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         185 VVLIKFNP----IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       185 v~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ++.-.|+.    ..-++|.++..|.|++||.-.               .+....+.+....|..+..+.+|++|++.+.
T Consensus       560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig---------------~rAKtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG---------------KRAKTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             cccccccccccccCceEEEecCCCceeeehhhc---------------chhhhcCcccccceeeeEeecCCcEEEEeec
Confidence            34344443    234899999999999999521               2223345567778899999999998776553

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.25  E-value=0.31  Score=36.11  Aligned_cols=155  Identities=13%  Similarity=0.056  Sum_probs=82.7

Q ss_pred             ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEE-cc
Q psy6859          90 PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYD-CK  168 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d-~~  168 (261)
                      ......++++++.++++. .+.....+.++....  ......   ....+..-.|++++..  .+....+...+++. ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~-~~~~~~~L~~~~~~~--~~~~~~---~g~~l~~PS~d~~g~~--W~v~~~~~~~~~~~~~~   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVS-EGDGGRSLYVGPAGG--PVRPVL---TGGSLTRPSWDPDGWV--WTVDDGSGGVRVVRDSA   96 (253)
T ss_pred             cccceEECCCCCeEEEEE-EcCCCCEEEEEcCCC--cceeec---cCCccccccccCCCCE--EEEEcCCCceEEEEecC
Confidence            355667788888777662 112334455554332  222221   1225667788888652  33434455555553 22


Q ss_pred             CCCcc-ceeeccC-cccCeEEEEEcCCCCEEEEEc---CCCeEEEeecccccccCCeeeeeecccccceeecCCCcccee
Q psy6859         169 GNGTP-LHVLDRL-HTKPVVLIKFNPIYQVVVSVD---KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPS  243 (261)
Q Consensus       169 ~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  243 (261)
                       .+.. ...+... ....|+.+.+||||..+|...   .++.|.+=-+..+....+.      ....++.........+.
T Consensus        97 -~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~------~l~~~~~~~~~~~~~v~  169 (253)
T PF10647_consen   97 -SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR------RLTGPRRVAPPLLSDVT  169 (253)
T ss_pred             -CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc------eeccceEecccccCcce
Confidence             2221 1222201 122899999999999775544   4577777765432110000      11122222333456889


Q ss_pred             eeeECCCCceEEEeec
Q psy6859         244 GLSFSPDGNKFVTISM  259 (261)
Q Consensus       244 ~~~~s~~~~~l~s~~~  259 (261)
                      ++.|.+++.+++.+..
T Consensus       170 ~v~W~~~~~L~V~~~~  185 (253)
T PF10647_consen  170 DVAWSDDSTLVVLGRS  185 (253)
T ss_pred             eeeecCCCEEEEEeCC
Confidence            9999999988776644

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.19  E-value=0.44  Score=37.24  Aligned_cols=196  Identities=7%  Similarity=0.002  Sum_probs=91.4

Q ss_pred             EcC-CC-eEEEecCCCe--EEEEeccCCceeeeEEeeccc-cceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeee
Q psy6859          11 VTK-TD-FVITASNDGH--IKFWKKQEEGIEFVKHFRSHL-GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIK   85 (261)
Q Consensus        11 ~~~-~~-~l~s~~~d~~--i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~   85 (261)
                      |.+ |+ +|+.+..||.  +.+.|+.++   .+.+|.... .......++++++.++-......|+-.|+.+.+....+.
T Consensus        43 ft~dG~kllF~s~~dg~~nly~lDL~t~---~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   43 FTDDGRKLLFASDFDGNRNLYLLDLATG---EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             B-TTS-EEEEEE-TTSS-EEEEEETTT----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             cCCCCCEEEEEeccCCCcceEEEEcccC---EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            455 54 5555555665  444566664   333444332 334466778888887666566789999999887766666


Q ss_pred             ccCccee-EEEE-eecCCceeeeeee------------------cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEe
Q psy6859          86 LDFTPLT-VECI-HYLGDAIPTAAVS------------------DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYL  145 (261)
Q Consensus        86 ~~~~~~~-~~~~-~~~~~~~~~~~~s------------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (261)
                      .+..-.. ..++ ..++..++.+...                  ..-...|.-.|+.+++....+..   ...+--+.|+
T Consensus       120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~---~~wlgH~~fs  196 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED---TDWLGHVQFS  196 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE---SS-EEEEEEE
T ss_pred             CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec---CccccCcccC
Confidence            5544332 2332 2333333333211                  11234666778888876666653   3366778888


Q ss_pred             CCCCceEEEE--ecCCCe-EEEEEccCCCccceeeccCc--ccCeEEEEEcCCCCEEEEE-----cCCCeEEEeeccc
Q psy6859         146 GDAIPTAAVS--DQDSSH-VHIYDCKGNGTPLHVLDRLH--TKPVVLIKFNPIYQVVVSV-----DKAGILEYWSGYK  213 (261)
Q Consensus       146 ~~~~~~~~~~--~~~d~~-i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~  213 (261)
                      |....+++.+  |..+.. -+||-++..+.-.+.+. .+  ...+..=-|.|||..|.--     +.+..|.-+|+.+
T Consensus       197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~-~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t  273 (386)
T PF14583_consen  197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH-RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT  273 (386)
T ss_dssp             TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred             CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee-cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence            8877644443  222322 36777764555444443 22  2233444789999855331     1233455566643

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.16  E-value=0.49  Score=37.53  Aligned_cols=182  Identities=14%  Similarity=0.053  Sum_probs=81.0

Q ss_pred             CCeEEEec------CCCeEEEEeccCCceeeeEEeecc---ccceeEEEEeeCCCEEEEEe-------------------
Q psy6859          14 TDFVITAS------NDGHIKFWKKQEEGIEFVKHFRSH---LGVIHSICTNYNGTLLCTVA-------------------   65 (261)
Q Consensus        14 ~~~l~s~~------~d~~i~iw~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~-------------------   65 (261)
                      |++++++-      .-|-+.+.|-++.  +........   ..--..+.|.|..+.++|..                   
T Consensus       141 G~imIS~lGd~~G~g~Ggf~llD~~tf--~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~  218 (461)
T PF05694_consen  141 GRIMISALGDADGNGPGGFVLLDGETF--EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG  218 (461)
T ss_dssp             --EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred             ccEEEEeccCCCCCCCCcEEEEcCccc--cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence            56666642      2234666666544  344433321   12235666777666777653                   


Q ss_pred             -CCCcEEEEEccccceeeeeeccCcc---eeEEEEeecCCceeeeeeecCCCCeEEEEEc-CCCc--eeeEEeecCC---
Q psy6859          66 -SDKAMKVFDVINFDMINMIKLDFTP---LTVECIHYLGDAIPTAAVSDQDSSRVHIYDC-KGND--MINMIKLDFT---  135 (261)
Q Consensus        66 -~dg~v~~wd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~-~~~~--~~~~~~~~~~---  135 (261)
                       .-.++.+||+.+.+.++++.+....   ..+...+........  +.+.....|..|-- +.++  ....+.....   
T Consensus       219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF--vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~  296 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF--VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE  296 (461)
T ss_dssp             -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE--EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred             cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE--EEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence             1247999999999999999877543   333333322221111  11123444444432 3332  2222222111   


Q ss_pred             --------------cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcccee--eccC---------------cccC
Q psy6859         136 --------------PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHV--LDRL---------------HTKP  184 (261)
Q Consensus       136 --------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--~~~~---------------~~~~  184 (261)
                                    |.-++.+..+.|.++ +.+++-..|.|+.||+....++...  +..+               -.+.
T Consensus       297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrf-LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg  375 (461)
T PF05694_consen  297 GWILPEMLKPFGAVPPLITDILISLDDRF-LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG  375 (461)
T ss_dssp             SS---GGGGGG-EE------EEE-TTS-E-EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred             cccccccccccccCCCceEeEEEccCCCE-EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence                          346789999999986 5778888999999999844444322  1100               1122


Q ss_pred             eEEEEEcCCCCEEEEE
Q psy6859         185 VVLIKFNPIYQVVVSV  200 (261)
Q Consensus       185 v~~~~~~~~~~~l~~~  200 (261)
                      ..-+..|.||+.|+..
T Consensus       376 PqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  376 PQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             ---EEE-TTSSEEEEE
T ss_pred             CCeEEEccCCeEEEEE
Confidence            3557888899877554

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.11  E-value=0.29  Score=40.93  Aligned_cols=101  Identities=13%  Similarity=0.243  Sum_probs=65.0

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEe--eCCCEEEEEeCCCcEEEEEccc---------cceee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTN--YNGTLLCTVASDKAMKVFDVIN---------FDMIN   82 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg~v~~wd~~~---------~~~~~   82 (261)
                      ++..++-+....+.|||......+....+ ...+.|.++.|.  |+++.+++.+..+.|.++.-..         ...++
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~  119 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR  119 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence            33333344456799999988755555555 356889999996  6899999999999999986421         12333


Q ss_pred             eee---ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEc
Q psy6859          83 MIK---LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC  121 (261)
Q Consensus        83 ~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~  121 (261)
                      .+.   ...+++....+-.+|..+++      .++.+.++|-
T Consensus       120 ~i~i~~~T~h~Igds~Wl~~G~LvV~------sGNqlfv~dk  155 (631)
T PF12234_consen  120 KIDISSHTPHPIGDSIWLKDGTLVVG------SGNQLFVFDK  155 (631)
T ss_pred             EEEeecCCCCCccceeEecCCeEEEE------eCCEEEEECC
Confidence            332   22345555555555554433      4778888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK10115 protease 2; Provisional

Probab=96.10  E-value=0.79  Score=39.44  Aligned_cols=193  Identities=8%  Similarity=0.005  Sum_probs=96.2

Q ss_pred             eEEEEEcC-CCeEEEec-----CCCeEEEEeccCCceeee-EEeeccccceeEEEEeeCCCEEEEEeCC------CcEEE
Q psy6859           6 ITHVVVTK-TDFVITAS-----NDGHIKFWKKQEEGIEFV-KHFRSHLGVIHSICTNYNGTLLCTVASD------KAMKV   72 (261)
Q Consensus         6 v~~~~~~~-~~~l~s~~-----~d~~i~iw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~v~~   72 (261)
                      +..+.++| +++|+.+.     ....|++-|+.++  ..+ ..+.+ ..  ..++|.+|++.|+-...+      ..|..
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--NWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--CCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            56678888 77766542     2235777788765  221 22221 11  458999998866655432      35777


Q ss_pred             EEcccc--ceeeeeeccCcceeEE-EEeecCCceeeeeeecCCCCeEEEEEcC--CCceeeEEeecCCcceEEEEEEeCC
Q psy6859          73 FDVINF--DMINMIKLDFTPLTVE-CIHYLGDAIPTAAVSDQDSSRVHIYDCK--GNDMINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        73 wd~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                      +++.++  +....+.......... ....+++.++ +..+...++.+.+++..  .+.....+... .. ....+. +..
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~-i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~~  279 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVV-IHLASATTSEVLLLDAELADAEPFVFLPRR-KD-HEYSLD-HYQ  279 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEE-EEEECCccccEEEEECcCCCCCceEEEECC-CC-CEEEEE-eCC
Confidence            888877  3333343222222222 2233566555 44444567789999853  33322222221 12 222222 222


Q ss_pred             CCceEEEEecCCCeEEEE--EccCCCccceeeccCc--ccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         148 AIPTAAVSDQDSSHVHIY--DCKGNGTPLHVLDRLH--TKPVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~--d~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                       ..+++.+.......++.  ++...++ ...+- .+  ...+..+.+. .+.++++...+|.-+++-+
T Consensus       280 -~~ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~-~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        280 -HRFYLRSNRHGKNFGLYRTRVRDEQQ-WEELI-PPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             -CEEEEEEcCCCCCceEEEecCCCccc-CeEEE-CCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence             22334443222333344  4431122 23332 33  3467888887 3345566667776665544

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=96.10  E-value=0.092  Score=43.75  Aligned_cols=72  Identities=15%  Similarity=0.306  Sum_probs=43.1

Q ss_pred             CCeEEEecCCCeEEEEeccC---CceeeeEEe-ec--------------------cccceeEEEEee----CCCEEEEEe
Q psy6859          14 TDFVITASNDGHIKFWKKQE---EGIEFVKHF-RS--------------------HLGVIHSICTNY----NGTLLCTVA   65 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~---~~~~~~~~~-~~--------------------~~~~v~~~~~~~----~~~~l~s~~   65 (261)
                      ...++.+..||.+.......   .+....... ..                    ..+.+..++++.    +..++++.+
T Consensus       158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~  237 (547)
T PF11715_consen  158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS  237 (547)
T ss_dssp             SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence            45677778888888777654   111111111 10                    113345555555    677999999


Q ss_pred             CCCcEEEEEccccceeeeee
Q psy6859          66 SDKAMKVFDVINFDMINMIK   85 (261)
Q Consensus        66 ~dg~v~~wd~~~~~~~~~~~   85 (261)
                      .|+++|+||+.+++++....
T Consensus       238 ~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  238 RDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             TTSEEEEEETTTTCEEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEec
Confidence            99999999999999866654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.07  E-value=0.69  Score=38.41  Aligned_cols=198  Identities=9%  Similarity=0.005  Sum_probs=111.5

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccc-ccee----------EEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL-GVIH----------SICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      +..++.++.++.|.-.|..++  +.+.++.... ..+.          .+++.  +..++.++.|+.+.-.|..+|+.+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TG--k~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTG--KELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVW  144 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCC--ceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEe
Confidence            467777888888888888877  4444433211 1111          12222  3367778889999999999999887


Q ss_pred             eeeccCcc----eeEEEEeecCCceeeeeee--cCCCCeEEEEEcCCCceeeEEeecCCc--------------------
Q psy6859          83 MIKLDFTP----LTVECIHYLGDAIPTAAVS--DQDSSRVHIYDCKGNDMINMIKLDFTP--------------------  136 (261)
Q Consensus        83 ~~~~~~~~----~~~~~~~~~~~~~~~~~~s--~~~d~~i~i~d~~~~~~~~~~~~~~~~--------------------  136 (261)
                      ........    ....-+- .+..++.....  ...++.|.-+|.++++.+-.+......                    
T Consensus       145 ~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw  223 (527)
T TIGR03075       145 SKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW  223 (527)
T ss_pred             ecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence            76542211    1100011 12333332110  013689999999999876554332111                    


Q ss_pred             ---------ceE-EEEEEeCCCCceEEEEec---CC-----------CeEEEEEccCCCccceeecc-Ccc-------cC
Q psy6859         137 ---------LTV-ECIHYLGDAIPTAAVSDQ---DS-----------SHVHIYDCKGNGTPLHVLDR-LHT-------KP  184 (261)
Q Consensus       137 ---------~~~-~~~~~~~~~~~~~~~~~~---~d-----------~~i~i~d~~~~~~~~~~~~~-~~~-------~~  184 (261)
                               ..+ ..+++.++...+++-+|.   .+           ..|.-.|++ +++....++. .|+       ..
T Consensus       224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~-TG~~~W~~Q~~~~D~wD~d~~~~  302 (527)
T TIGR03075       224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD-TGKIKWHYQTTPHDEWDYDGVNE  302 (527)
T ss_pred             CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc-cCCEEEeeeCCCCCCccccCCCC
Confidence                     000 123555554433233322   01           157777888 8888777761 221       11


Q ss_pred             eEEEEEcCCCC---EEEEEcCCCeEEEeeccccccc
Q psy6859         185 VVLIKFNPIYQ---VVVSVDKAGILEYWSGYKQEFK  217 (261)
Q Consensus       185 v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~  217 (261)
                      ..-+.+..+|+   .++.+..+|.+.+.|.++++..
T Consensus       303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            12223335666   7789999999999999887764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.03  E-value=0.58  Score=37.27  Aligned_cols=72  Identities=17%  Similarity=0.132  Sum_probs=46.0

Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCccc-CeE---EEEEcCC--------------CCEE-E
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTK-PVV---LIKFNPI--------------YQVV-V  198 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~v~---~~~~~~~--------------~~~l-~  198 (261)
                      .+.++..+|.+..  +++...-|+|.++|+. .+..++.++ +... .+.   ...-...              ..+| +
T Consensus       309 ~~~~i~~sP~~~l--aA~tDslGRV~LiD~~-~~~vvrmWK-GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  309 EGESICLSPSGRL--AAVTDSLGRVLLIDVA-RGIVVRMWK-GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             eEEEEEECCCCCE--EEEEcCCCcEEEEECC-CChhhhhhc-cCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            4677888899763  5666778999999998 888887776 3322 111   1111000              1133 4


Q ss_pred             EEcCCCeEEEeeccc
Q psy6859         199 SVDKAGILEYWSGYK  213 (261)
Q Consensus       199 ~~~~dg~i~iwd~~~  213 (261)
                      -+-..|.|.||.++.
T Consensus       385 yaprRg~lEvW~~~~  399 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQ  399 (415)
T ss_pred             EeccCCeEEEEecCC
Confidence            456789999999853

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.99  E-value=0.5  Score=36.09  Aligned_cols=149  Identities=12%  Similarity=0.003  Sum_probs=79.7

Q ss_pred             EEeeCCCEEEEE-eCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe
Q psy6859          53 CTNYNGTLLCTV-ASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK  131 (261)
Q Consensus        53 ~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~  131 (261)
                      .|.++...|+-+ -..+.|.-|+..+++. ..+..+........+.. +..++++      +..+.+++.+++..+..+.
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~-~g~Lv~~------~~g~~~~~~~~~~~~t~~~  102 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDA-GGRLIAC------EHGVRLLDPDTGGKITLLA  102 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecC-CCeEEEE------ccccEEEeccCCceeEEec
Confidence            466666644443 4667888888765532 22333333333333333 3344443      5556777776554433322


Q ss_pred             e---cCCcceEEEEEEeCCCCceEEEEecC---------CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEE
Q psy6859         132 L---DFTPLTVECIHYLGDAIPTAAVSDQD---------SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVS  199 (261)
Q Consensus       132 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  199 (261)
                      .   .............|++..  .++...         ...-.+|-+...+..++.+. .+-..-+.|+||||++.|+.
T Consensus       103 ~~~~~~~~~r~ND~~v~pdG~~--wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~-~~~~~~NGla~SpDg~tly~  179 (307)
T COG3386         103 EPEDGLPLNRPNDGVVDPDGRI--WFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD-DDLTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             cccCCCCcCCCCceeEcCCCCE--EEeCCCccccCccccCCcceEEEEcCCCCEEEeec-CcEEecCceEECCCCCEEEE
Confidence            1   122234556777788762  332221         01113444432344455554 44556688999999987766


Q ss_pred             Ec-CCCeEEEeecc
Q psy6859         200 VD-KAGILEYWSGY  212 (261)
Q Consensus       200 ~~-~dg~i~iwd~~  212 (261)
                      +. ..+.|.-|++.
T Consensus       180 aDT~~~~i~r~~~d  193 (307)
T COG3386         180 ADTPANRIHRYDLD  193 (307)
T ss_pred             EeCCCCeEEEEecC
Confidence            55 45778888775

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.91  E-value=0.36  Score=38.89  Aligned_cols=145  Identities=9%  Similarity=0.005  Sum_probs=86.8

Q ss_pred             eCCCEEEE-EeCCCcEEEEEccccceeeeeeccCcceeEEEEeec--------CCceeeeeeecCCCCeEEEEEcCC-Cc
Q psy6859          56 YNGTLLCT-VASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYL--------GDAIPTAAVSDQDSSRVHIYDCKG-ND  125 (261)
Q Consensus        56 ~~~~~l~s-~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~~~d~~i~i~d~~~-~~  125 (261)
                      .+..+|+. ++....++-.|+..|+.+.+...+...  ++.+.|.        .+.++.+     .+..|.-.|.+- +.
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGl-----S~~svFrIDPR~~gN  549 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGL-----SDYSVFRIDPRARGN  549 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEee-----cccceEEecccccCC
Confidence            34444443 445557778888899999888866543  4444442        2233333     455555556653 22


Q ss_pred             eeeEEeecC--CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCC
Q psy6859         126 MINMIKLDF--TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA  203 (261)
Q Consensus       126 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  203 (261)
                      .+...+...  ......+..-...|.   ++.++..|.|++||.- .......++ +....|..+..+.+|+++++.+ .
T Consensus       550 Ki~v~esKdY~tKn~Fss~~tTesGy---Ia~as~kGDirLyDRi-g~rAKtalP-~lG~aIk~idvta~Gk~ilaTC-k  623 (776)
T COG5167         550 KIKVVESKDYKTKNKFSSGMTTESGY---IAAASRKGDIRLYDRI-GKRAKTALP-GLGDAIKHIDVTANGKHILATC-K  623 (776)
T ss_pred             ceeeeeehhccccccccccccccCce---EEEecCCCceeeehhh-cchhhhcCc-ccccceeeeEeecCCcEEEEee-c
Confidence            222222111  111222232233342   8888999999999975 444444555 7788899999999999887666 3


Q ss_pred             CeEEEeeccc
Q psy6859         204 GILEYWSGYK  213 (261)
Q Consensus       204 g~i~iwd~~~  213 (261)
                      ..+.+-|++-
T Consensus       624 ~yllL~d~~i  633 (776)
T COG5167         624 NYLLLTDVPI  633 (776)
T ss_pred             ceEEEEeccc
Confidence            4677888753

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.87  E-value=0.75  Score=39.56  Aligned_cols=27  Identities=30%  Similarity=0.487  Sum_probs=19.5

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859          48 VIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus        48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      .|..+..+|+|++++..|..| |.|..+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            477888889999888888765 444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02790 Kelch-like protein; Provisional

Probab=95.83  E-value=0.84  Score=37.47  Aligned_cols=183  Identities=8%  Similarity=-0.071  Sum_probs=83.3

Q ss_pred             CCeEEEecCCC-----eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC--CcEEEEEccccceeeeeec
Q psy6859          14 TDFVITASNDG-----HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD--KAMKVFDVINFDMINMIKL   86 (261)
Q Consensus        14 ~~~l~s~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~v~~wd~~~~~~~~~~~~   86 (261)
                      +.+++.|+.++     .+..||..+..+..+..+...... .+++ .-++...+.|+.+  ..+..||..+++....-..
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            44567777543     466777776543333333221111 1222 3467777777754  3577888766554332222


Q ss_pred             cCcceeEEEEeecCCceeeeeeecCC---CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEE
Q psy6859          87 DFTPLTVECIHYLGDAIPTAAVSDQD---SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVH  163 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~s~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  163 (261)
                      +........... ++.+.+.   |+.   ...+..||.++.+-...-.... +..-.++....+.   +.+.|   |.+.
T Consensus       350 ~~~r~~~~~~~~-~g~IYvi---GG~~~~~~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~~~~~~---IYv~G---G~~e  418 (480)
T PHA02790        350 LKPRCNPAVASI-NNVIYVI---GGHSETDTTTEYLLPNHDQWQFGPSTYY-PHYKSCALVFGRR---LFLVG---RNAE  418 (480)
T ss_pred             CCCCcccEEEEE-CCEEEEe---cCcCCCCccEEEEeCCCCEEEeCCCCCC-ccccceEEEECCE---EEEEC---CceE
Confidence            222112222222 3344443   222   2457788887664322211111 1111122222222   24444   3467


Q ss_pred             EEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeeccc
Q psy6859         164 IYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYK  213 (261)
Q Consensus       164 i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~  213 (261)
                      +||.. +.+  .+..+. ...... +++. -+++..+.|+.+     ..+..||..+
T Consensus       419 ~ydp~-~~~W~~~~~m~-~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        419 FYCES-SNTWTLIDDPI-YPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             EecCC-CCcEeEcCCCC-CCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence            78876 432  222221 111111 2222 366766777654     3466777654

>PHA03098 kelch-like protein; Provisional

Probab=95.81  E-value=0.92  Score=37.81  Aligned_cols=66  Identities=9%  Similarity=0.060  Sum_probs=32.5

Q ss_pred             eCCCEEEEEeCCC------cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCC-----CeEEEEEcCCC
Q psy6859          56 YNGTLLCTVASDK------AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-----SRVHIYDCKGN  124 (261)
Q Consensus        56 ~~~~~l~s~~~dg------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-----~~i~i~d~~~~  124 (261)
                      .++..++.|+.++      .+..||..+.+....-..+........... ++.++..   |+.+     ..+..||..+.
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~---GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVI---GGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEE---eCCCCCEecceEEEEcCCCC
Confidence            4556777776542      577888877665332222211111122222 3334333   2322     45778888766


Q ss_pred             c
Q psy6859         125 D  125 (261)
Q Consensus       125 ~  125 (261)
                      +
T Consensus       369 ~  369 (534)
T PHA03098        369 K  369 (534)
T ss_pred             c
Confidence            4

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.76  E-value=0.063  Score=27.11  Aligned_cols=31  Identities=13%  Similarity=0.155  Sum_probs=25.7

Q ss_pred             cceeEEEEeeCC---CEEEEEeCCCcEEEEEccc
Q psy6859          47 GVIHSICTNYNG---TLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus        47 ~~v~~~~~~~~~---~~l~s~~~dg~v~~wd~~~   77 (261)
                      +.|.++.|+|+.   .+|+.+-..+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999743   4888888889999999985

It contains a characteristic DLL sequence motif.

>KOG1898|consensus

Probab=95.73  E-value=1.3  Score=39.03  Aligned_cols=136  Identities=16%  Similarity=0.215  Sum_probs=84.9

Q ss_pred             CcEEEEEcc-ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC
Q psy6859          68 KAMKVFDVI-NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG  146 (261)
Q Consensus        68 g~v~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (261)
                      |.++.|++. .++.+.-+....-+....++.+-.+.+++     +-...+++||+...++++..+...-+..|..+++..
T Consensus       912 g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~La-----gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~  986 (1205)
T KOG1898|consen  912 GFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLA-----GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG  986 (1205)
T ss_pred             CceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEE-----ecccEEEEeeCChHHHHhhhhhccCceEEEEEeecc
Confidence            446666654 33433222222233444555555555554     478899999999998888877766677888888776


Q ss_pred             CCCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         147 DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       147 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ..    ++.|.....+.++-.+...+.+..+. ..-...|+.+.+- |...+|.+..=|.+.+-.+..
T Consensus       987 ~R----I~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen  987 AR----IVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             eE----EEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence            66    66666666666666654455555553 2334556666554 445688888778877776643

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.67  E-value=0.68  Score=35.23  Aligned_cols=227  Identities=12%  Similarity=0.109  Sum_probs=96.9

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecc----ccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH----LGVIHSICTNYNGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      ..++..|.|.. ..-+++|.. +.  |+...+++..-......-    .-....+.|..+ +.++ ++..+. .+.....
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~~-g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g~-ll~T~Dg   89 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGAY-GT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPGL-LLHTTDG   89 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEETT-TE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETTE-EEEESST
T ss_pred             CCceEEEEEecCCEEEEEecC-CE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCce-EEEecCC
Confidence            35788999987 555666554 54  344444332221111111    123566777543 3444 455553 3444444


Q ss_pred             cceeeeeec----cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC-CCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          78 FDMINMIKL----DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK-GNDMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        78 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      |+.-..+..    +..+..+..+.  ......+    +..|.  ||-.. .++.=+.+. ......+..+..++++.+  
T Consensus        90 G~tW~~v~l~~~lpgs~~~i~~l~--~~~~~l~----~~~G~--iy~T~DgG~tW~~~~-~~~~gs~~~~~r~~dG~~--  158 (302)
T PF14870_consen   90 GKTWERVPLSSKLPGSPFGITALG--DGSAELA----GDRGA--IYRTTDGGKTWQAVV-SETSGSINDITRSSDGRY--  158 (302)
T ss_dssp             TSS-EE----TT-SS-EEEEEEEE--TTEEEEE----ETT----EEEESSTTSSEEEEE--S----EEEEEE-TTS-E--
T ss_pred             CCCcEEeecCCCCCCCeeEEEEcC--CCcEEEE----cCCCc--EEEeCCCCCCeeEcc-cCCcceeEeEEECCCCcE--
Confidence            543333322    22333222221  2222222    23333  33222 232222222 223456788888899974  


Q ss_pred             EEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL  232 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  232 (261)
                      ++++..-....-||--  ...-..........|..|.|.|++.+.+.+ ..|.|++=+.....      ..+    .+.+
T Consensus       159 vavs~~G~~~~s~~~G--~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~------~~w----~~~~  225 (302)
T PF14870_consen  159 VAVSSRGNFYSSWDPG--QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG------ETW----SEPI  225 (302)
T ss_dssp             EEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE------EEE-------B
T ss_pred             EEEECcccEEEEecCC--CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc------ccc----cccc
Confidence            5555544444567643  122222222456889999999998866655 78888887721100      000    1111


Q ss_pred             eecCCCccceeeeeECCCCceEEEeec
Q psy6859         233 FEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       233 ~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ..+....-.+.+++|.+++...|+|+.
T Consensus       226 ~~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  226 IPIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             -TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             CCcccCceeeEEEEecCCCCEEEEeCC
Confidence            112222334789999999888887764

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.5  Score=33.40  Aligned_cols=110  Identities=5%  Similarity=-0.013  Sum_probs=59.3

Q ss_pred             CCeEEEecCC--CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeeeeccCcc
Q psy6859          14 TDFVITASND--GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMINMIKLDFTP   90 (261)
Q Consensus        14 ~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~~~~~~~~~   90 (261)
                      +.++.+.+.-  ..|++|++.++  +.+..-+-....+..=-...-+.++. -.=.+|.-..+|..+.+++..+..+.. 
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~g--q~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-  132 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTG--QEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE-  132 (262)
T ss_pred             CEEEEeccccccceeEEEeccCc--eEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc-
Confidence            3455555543  46899999876  33332221112222111111122222 234678888999988888877765443 


Q ss_pred             eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee
Q psy6859          91 LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL  132 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~  132 (261)
                        ...+..++..++..    +...++..-|.++......+..
T Consensus       133 --GWgLt~d~~~Lims----dGsatL~frdP~tfa~~~~v~V  168 (262)
T COG3823         133 --GWGLTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQV  168 (262)
T ss_pred             --ceeeecCCcceEee----CCceEEEecCHHHhhhcceEEE
Confidence              23334455555444    5666777778776655544443

>KOG1897|consensus

Probab=95.60  E-value=1.4  Score=38.53  Aligned_cols=191  Identities=15%  Similarity=0.272  Sum_probs=113.1

Q ss_pred             eEEEEEcC--CCeEEEec----------CCCeEEEEeccC-CceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEE
Q psy6859           6 ITHVVVTK--TDFVITAS----------NDGHIKFWKKQE-EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKV   72 (261)
Q Consensus         6 v~~~~~~~--~~~l~s~~----------~d~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~   72 (261)
                      |.++.|..  +.+++.|.          ..|.|.++.+.+ +..+.+.... -++.+.++.. -+|+++|.  -...|++
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~Gav~aL~~-fngkllA~--In~~vrL  852 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKGAVYALVE-FNGKLLAG--INQSVRL  852 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee-eccceeehhh-hCCeEEEe--cCcEEEE
Confidence            34445664  56777764          357788888776 3333333322 2355555543 25666654  5568999


Q ss_pred             EEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEEEEeCCCCce
Q psy6859          73 FDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECIHYLGDAIPT  151 (261)
Q Consensus        73 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (261)
                      |+..+.+.++.-.....+.....+.-.++.++.+    ..-+.+.+...+..+ ....+.-...|...+++.+-.+..  
T Consensus       853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~Vg----Dlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~--  926 (1096)
T KOG1897|consen  853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVG----DLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT--  926 (1096)
T ss_pred             EEccccceehhhhcccCCeEEEEEEecCcEEEEe----eccceEEEEEEeccCCceEEeehhhCccceeeEEEecCce--
Confidence            9998886666555556677788888888888877    555666655444332 233334445677888888877765  


Q ss_pred             EEEEecCCCeEEEEEccCC------------------CccceeeccCcccCeEEE--EEcCCCCEEEEEcCCCeEEEe
Q psy6859         152 AAVSDQDSSHVHIYDCKGN------------------GTPLHVLDRLHTKPVVLI--KFNPIYQVVVSVDKAGILEYW  209 (261)
Q Consensus       152 ~~~~~~~d~~i~i~d~~~~------------------~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~iw  209 (261)
                       ++.+..+|.+.+-.....                  ++.+..+  .|..-|..+  ..+|-+..++.|..+|.|-+.
T Consensus       927 -ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f--~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  927 -YLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKF--RHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred             -EEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeee--eecceEeeccccccCCCCcEEEEEccceEEEE
Confidence             455556777776554311                  1222333  244444442  334555567788888887654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.58  E-value=0.68  Score=34.62  Aligned_cols=153  Identities=10%  Similarity=0.027  Sum_probs=88.1

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeee-ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc
Q psy6859          47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIK-LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND  125 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~  125 (261)
                      +-+..+.++.+  +...+..+.-+++.|+.+...-.... .+. ......+.-.|+.....    ..+.-+.+.|+.+.+
T Consensus        87 ~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vsGn~aYVa----dlddgfLivdvsdps  159 (370)
T COG5276          87 DLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVSGNYAYVA----DLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEecCCEEEEe----eccCcEEEEECCCCC
Confidence            44566677654  77777888889999998654222211 111 13344555567666555    557777788887653


Q ss_pred             e-eeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC
Q psy6859         126 M-INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG  204 (261)
Q Consensus       126 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  204 (261)
                      . ...-...........++.+++.    ...+..|+-+.+-|+.+...++..-.......+.++..+++..+++... .|
T Consensus       160 sP~lagrya~~~~d~~~v~ISGn~----AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~-eg  234 (370)
T COG5276         160 SPQLAGRYALPGGDTHDVAISGNY----AYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD-EG  234 (370)
T ss_pred             CceeeeeeccCCCCceeEEEecCe----EEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc-cc
Confidence            2 1111111122233567777766    4445568889999998444443222102333688888888776666554 33


Q ss_pred             eEEEeecc
Q psy6859         205 ILEYWSGY  212 (261)
Q Consensus       205 ~i~iwd~~  212 (261)
                       +.+-|..
T Consensus       235 -vlivd~s  241 (370)
T COG5276         235 -VLIVDVS  241 (370)
T ss_pred             -eEEEecC
Confidence             5555554

>KOG1897|consensus

Probab=95.57  E-value=1.5  Score=38.45  Aligned_cols=189  Identities=9%  Similarity=0.125  Sum_probs=104.6

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC-----------C---CcEEEEEccccce
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-----------D---KAMKVFDVINFDM   80 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----------d---g~v~~wd~~~~~~   80 (261)
                      ..++++.. +.+++-.++.-+....+++.-+ .....+++.+....+.+.+.           .   ..++++|-++.+.
T Consensus       685 d~l~~~~~-~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v  762 (1096)
T KOG1897|consen  685 DSLASANG-GALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV  762 (1096)
T ss_pred             ceEEEecC-CceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence            34555544 5666776665322344444433 34466677664434433321           1   1366777776666


Q ss_pred             eeeeeccCcc--eeE--EEEeecCCceeeeee---ec----CCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC
Q psy6859          81 INMIKLDFTP--LTV--ECIHYLGDAIPTAAV---SD----QDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI  149 (261)
Q Consensus        81 ~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~---s~----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (261)
                      +...+.....  ..+  +.+..+.+..+.+.-   -+    -..|.|.++.....+.+..+....-.+.+.++.--... 
T Consensus       763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngk-  841 (1096)
T KOG1897|consen  763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGK-  841 (1096)
T ss_pred             EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCe-
Confidence            5544433221  112  223333232222210   01    23588888888774444433322222344444322222 


Q ss_pred             ceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                         +++| -...|++|++. +.+.++.-. .+..++..+...-.|..++.|..-+++.+...+
T Consensus       842 ---llA~-In~~vrLye~t-~~~eLr~e~-~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  842 ---LLAG-INQSVRLYEWT-TERELRIEC-NISNPIIALDLQVKGDEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             ---EEEe-cCcEEEEEEcc-ccceehhhh-cccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence               3333 36789999998 665666555 788899999999999999999988888776654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.56  E-value=1.1  Score=37.15  Aligned_cols=58  Identities=5%  Similarity=-0.060  Sum_probs=36.8

Q ss_pred             cEEEEEccccceeeeeeccCc---------ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCcee
Q psy6859          69 AMKVFDVINFDMINMIKLDFT---------PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI  127 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~  127 (261)
                      .|.-.|+++|+....++...+         +.....+..+++..- +++.+..+|.+.++|.++++.+
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~-~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRK-LLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEE-EEEEeCCCceEEEEECCCCcee
Confidence            567778889998887774222         112223333454222 2233589999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1916|consensus

Probab=95.53  E-value=0.026  Score=48.01  Aligned_cols=95  Identities=11%  Similarity=0.192  Sum_probs=57.2

Q ss_pred             CCeEEEEEcC--CCceeeEEeec------CCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccC
Q psy6859         113 SSRVHIYDCK--GNDMINMIKLD------FTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKP  184 (261)
Q Consensus       113 d~~i~i~d~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  184 (261)
                      -|.+.+||+.  .|+....+..+      ..+..|....|-++..+  +..+-.++.+++.... . .....+. .|...
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~--ic~~~~~~~i~lL~~~-r-a~~~l~r-sHs~~  226 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVY--ICYGLKGGEIRLLNIN-R-ALRSLFR-SHSQR  226 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccce--eeeccCCCceeEeeec-h-HHHHHHH-hcCCC
Confidence            3667788765  44433333221      11223444444445433  5556667888877765 2 2224444 57666


Q ss_pred             eEEE-----------EEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         185 VVLI-----------KFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       185 v~~~-----------~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      ++.+           ..+|||..++.+..||.++.|.+.
T Consensus       227 ~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  227 VTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             cccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            5554           368999999999999999999863

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.48  E-value=0.74  Score=34.41  Aligned_cols=165  Identities=11%  Similarity=0.091  Sum_probs=94.3

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe--eccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF--RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +..|.++.|+| .+.|++..+...-.||=..++  +.++++  .+- +....+.+..++++.++--+++.+.++.+....
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G--dlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG--DLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCC--ceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            34589999999 677777776666666654545  555554  332 334678888888888888889999998877553


Q ss_pred             eeeee-----ecc-----CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe---ec-----CCcceEEE
Q psy6859          80 MINMI-----KLD-----FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK---LD-----FTPLTVEC  141 (261)
Q Consensus        80 ~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~---~~-----~~~~~~~~  141 (261)
                      .+...     .+.     .......++.+....++..    -..+-+.||.......-....   .+     ..-..+..
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a----KEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA----KERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEE----EccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            32222     111     1223344555555555554    445555666554322100000   00     00124566


Q ss_pred             EEEeCCCCceEEEEecCCCeEEEEEccCCCccceee
Q psy6859         142 IHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVL  177 (261)
Q Consensus       142 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  177 (261)
                      +.|++....+ ++-+.+++.+.-.|..  +.++..+
T Consensus       238 l~~~~~~~~L-LVLS~ESr~l~Evd~~--G~~~~~l  270 (316)
T COG3204         238 LEFNAITNSL-LVLSDESRRLLEVDLS--GEVIELL  270 (316)
T ss_pred             ceecCCCCcE-EEEecCCceEEEEecC--CCeeeeE
Confidence            7777666544 4555667777777874  4444444

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.44  E-value=0.082  Score=26.71  Aligned_cols=31  Identities=16%  Similarity=0.176  Sum_probs=25.5

Q ss_pred             cCeEEEEEcCCC---CEEEEEcCCCeEEEeeccc
Q psy6859         183 KPVVLIKFNPIY---QVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       183 ~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~  213 (261)
                      +.+.++.|+|..   .+|+.+-.-|.+.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358899999854   4888888889999999963

It contains a characteristic DLL sequence motif.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.11  E-value=1.2  Score=34.60  Aligned_cols=118  Identities=20%  Similarity=0.234  Sum_probs=0.0

Q ss_pred             ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC-ccceeec---cCcccCeEEEEEcCC----CCEEEEEcCC-----
Q psy6859         137 LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG-TPLHVLD---RLHTKPVVLIKFNPI----YQVVVSVDKA-----  203 (261)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~---~~~~~~v~~~~~~~~----~~~l~~~~~d-----  203 (261)
                      ...+.|+|.|++.   ++.....|.|++++..... ..+..+.   .........++++|+    +.+.++.+..     
T Consensus         2 ~~P~~~a~~pdG~---l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    2 NNPRSMAFLPDGR---LLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             SSEEEEEEETTSC---EEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             CCceEEEEeCCCc---EEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC


Q ss_pred             ---CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         204 ---GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       204 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                         ..|.-|.+..+    ..........-..+.........-..|+|.|||.+.++.+..+
T Consensus        79 ~~~~~v~r~~~~~~----~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   79 DNDNRVVRFTLSDG----DGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             SEEEEEEEEEEETT----SCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             CcceeeEEEeccCC----ccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.07  E-value=1.4  Score=35.24  Aligned_cols=147  Identities=9%  Similarity=0.010  Sum_probs=77.8

Q ss_pred             CCEEEEEeCCCcEEEEEccccc-----eeeeeeccCcceeEEEE----eecCCceeeeeeecCCCCeEEEEEcCCC--c-
Q psy6859          58 GTLLCTVASDKAMKVFDVINFD-----MINMIKLDFTPLTVECI----HYLGDAIPTAAVSDQDSSRVHIYDCKGN--D-  125 (261)
Q Consensus        58 ~~~l~s~~~dg~v~~wd~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~d~~i~i~d~~~~--~-  125 (261)
                      ...|+.|+..|.++||+...+.     .+.+.+... |+-.+..    +......+++    =.-+.+.+|.+...  . 
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~-PILqv~~G~F~s~~~~~~LaV----LhP~kl~vY~v~~~~g~~  111 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKD-PILQVECGKFVSGSEDLQLAV----LHPRKLSVYSVSLVDGTV  111 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCC-cEEEEEeccccCCCCcceEEE----ecCCEEEEEEEEecCCCc
Confidence            4589999999999999986433     222333222 2222211    1112222222    25567777776321  1 


Q ss_pred             ------eeeEEeecCCcceEEEEEE---eCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCE
Q psy6859         126 ------MINMIKLDFTPLTVECIHY---LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQV  196 (261)
Q Consensus       126 ------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  196 (261)
                            .+..+-.+.-+.....+..   -.-.....+..-+.||.+.+|+-+ .......+.  .---...+.|.|.-..
T Consensus       112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe-~~~f~~~lp--~~llPgPl~Y~~~tDs  188 (418)
T PF14727_consen  112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE-SFAFSRFLP--DFLLPGPLCYCPRTDS  188 (418)
T ss_pred             ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC-cEEEEEEcC--CCCCCcCeEEeecCCE
Confidence                  1111111111112222322   222212346677889999999976 333233332  2222344688888888


Q ss_pred             EEEEcCCCeEEEeecc
Q psy6859         197 VVSVDKAGILEYWSGY  212 (261)
Q Consensus       197 l~~~~~dg~i~iwd~~  212 (261)
                      +++++.+..+.-|...
T Consensus       189 fvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  189 FVTASSSWTLECYKYQ  204 (418)
T ss_pred             EEEecCceeEEEecHH
Confidence            8888888888888753

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.91  E-value=2.4  Score=37.02  Aligned_cols=203  Identities=12%  Similarity=0.032  Sum_probs=111.2

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeecccc--------ceeEEEEee----------------CCCEEEEEeCCCc
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLG--------VIHSICTNY----------------NGTLLCTVASDKA   69 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~l~s~~~dg~   69 (261)
                      +..++.++.++.|.-.|..++  +.+..+.....        ....+.+..                .+..++.++.|+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TG--k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~  271 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATG--KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR  271 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCC--cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence            667888888888888888876  44444432111        122333321                2347888889999


Q ss_pred             EEEEEccccceeeeeeccCcce----------e-E-EEEee--cCCceeeeeeec------CCCCeEEEEEcCCCceeeE
Q psy6859          70 MKVFDVINFDMINMIKLDFTPL----------T-V-ECIHY--LGDAIPTAAVSD------QDSSRVHIYDCKGNDMINM  129 (261)
Q Consensus        70 v~~wd~~~~~~~~~~~~~~~~~----------~-~-~~~~~--~~~~~~~~~~s~------~~d~~i~i~d~~~~~~~~~  129 (261)
                      +.-.|..+|+....+..+....          . . ..-.+  .++.++......      ..+|.|+-+|.++++.+-.
T Consensus       272 LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       272 LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            9999999999887654221100          0 0 00000  122333221000      1268899999999988766


Q ss_pred             EeecCC-------cc--------eE-EEEEEeCCCCceEEEEe----------------cCCCeEEEEEccCCCccceee
Q psy6859         130 IKLDFT-------PL--------TV-ECIHYLGDAIPTAAVSD----------------QDSSHVHIYDCKGNGTPLHVL  177 (261)
Q Consensus       130 ~~~~~~-------~~--------~~-~~~~~~~~~~~~~~~~~----------------~~d~~i~i~d~~~~~~~~~~~  177 (261)
                      +.....       +.        .+ ..++++++....++-+|                ...+.|.-.|.+ +++....+
T Consensus       352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~-TGk~~W~~  430 (764)
T TIGR03074       352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDAT-TGKERWVF  430 (764)
T ss_pred             EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCC-CCceEEEe
Confidence            543100       00        00 12333443332111111                123557777887 88887777


Q ss_pred             cc-Ccc-------cCeEEEEEcC-CCC---EEEEEcCCCeEEEeecccccccCC
Q psy6859         178 DR-LHT-------KPVVLIKFNP-IYQ---VVVSVDKAGILEYWSGYKQEFKFP  219 (261)
Q Consensus       178 ~~-~~~-------~~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~  219 (261)
                      +. .|+       ....-+.+.. +|+   .++.++.+|.+.++|.++++...+
T Consensus       431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            52 121       1111122332 563   789999999999999988765443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4499|consensus

Probab=94.57  E-value=1.2  Score=32.19  Aligned_cols=103  Identities=12%  Similarity=0.092  Sum_probs=64.1

Q ss_pred             eeEEEEeeCCCEEE-EEeCCCcEEEEE--ccccce-----eeeeec----cCcceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859          49 IHSICTNYNGTLLC-TVASDKAMKVFD--VINFDM-----INMIKL----DFTPLTVECIHYLGDAIPTAAVSDQDSSRV  116 (261)
Q Consensus        49 v~~~~~~~~~~~l~-s~~~dg~v~~wd--~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i  116 (261)
                      -+.++|+.+.+.+. .-+.+-+|.-||  ..+|..     +..++-    .......+++...|...+++    -..++|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~----~ng~~V  235 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT----FNGGTV  235 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE----ecCcEE
Confidence            36788987766554 445666787787  555542     222221    11111233444555555554    467899


Q ss_pred             EEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859         117 HIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus       117 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ...|+.+++.+..++.+.  ..+++++|-+...-.+.+++.
T Consensus       236 ~~~dp~tGK~L~eiklPt--~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  236 QKVDPTTGKILLEIKLPT--PQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             EEECCCCCcEEEEEEcCC--CceEEEEecCCCccEEEEEeh
Confidence            999999999999999863  478888887665444455544

>KOG1916|consensus

Probab=94.41  E-value=0.061  Score=45.95  Aligned_cols=117  Identities=12%  Similarity=0.127  Sum_probs=68.1

Q ss_pred             EEEEEcC----CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEE-----------EeeCCCEEEEEeCCCcEE
Q psy6859           7 THVVVTK----TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSIC-----------TNYNGTLLCTVASDKAMK   71 (261)
Q Consensus         7 ~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~s~~~dg~v~   71 (261)
                      .-|.|.|    .-++..+-.++++++...+..   ....+++|...+..++           .+|||+.++.++.||.++
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra---~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~  260 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRA---LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG  260 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeechH---HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence            4455555    346777778888888777653   2234455665554433           579999999999999999


Q ss_pred             EEEcc-ccc----eeeeeeccCcceeEEEEeecCCceeee-------e-eecCCCCeEEEEEcCCCcee
Q psy6859          72 VFDVI-NFD----MINMIKLDFTPLTVECIHYLGDAIPTA-------A-VSDQDSSRVHIYDCKGNDMI  127 (261)
Q Consensus        72 ~wd~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~d~~i~i~d~~~~~~~  127 (261)
                      .|.+. +++    ++...+.+.....+++. .+.+.+..+       . -+...+..+++|.....+++
T Consensus       261 f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  261 FYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            99865 333    34444444422233333 222211111       1 12245667888887666554

>KOG2377|consensus

Probab=94.36  E-value=1.3  Score=35.33  Aligned_cols=152  Identities=12%  Similarity=0.104  Sum_probs=81.2

Q ss_pred             EEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe-eccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859           7 THVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF-RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      +.+-|.. ++.|++ -..|.+.=|.+...+......+ ....++|.++.|++|.+.+|.--.+.+|.+.+....+....+
T Consensus        26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            3455555 444433 3335555666554322222222 234579999999999999999999999999998543322222


Q ss_pred             ----eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          85 ----KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        85 ----~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                          +.....+...+|.. ...++.+     .+..+.+|.....+ .++..+.  +...+.+..|.++....++.++-..
T Consensus       105 ~~~ck~k~~~IlGF~W~~-s~e~A~i-----~~~G~e~y~v~pekrslRlVks--~~~nvnWy~yc~et~v~LL~t~~~~  176 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTS-STEIAFI-----TDQGIEFYQVLPEKRSLRLVKS--HNLNVNWYMYCPETAVILLSTTVLE  176 (657)
T ss_pred             HHHhccCcceeEEEEEec-CeeEEEE-----ecCCeEEEEEchhhhhhhhhhh--cccCccEEEEccccceEeeeccccc
Confidence                22222232333322 2334443     45556666544321 2222221  3346788888888875555554334


Q ss_pred             CeEEEEEc
Q psy6859         160 SHVHIYDC  167 (261)
Q Consensus       160 ~~i~i~d~  167 (261)
                      +.+.=+.+
T Consensus       177 n~lnpf~~  184 (657)
T KOG2377|consen  177 NVLNPFHF  184 (657)
T ss_pred             cccccEEE
Confidence            44333333

>KOG2247|consensus

Probab=94.21  E-value=0.0091  Score=47.06  Aligned_cols=143  Identities=12%  Similarity=0.109  Sum_probs=87.5

Q ss_pred             eEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE
Q psy6859          50 HSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM  129 (261)
Q Consensus        50 ~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  129 (261)
                      ....|.+.+.-++.++.+..+..||- .++.......+..... +++...++.++.+   +-..+.+.+||+.+... +.
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~ald-m~wDkegdvlavl---Aek~~piylwd~n~eyt-qq  111 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALD-MAWDKEGDVLAVL---AEKTGPIYLWDVNSEYT-QQ  111 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCchhHhh-hhhccccchhhhh---hhcCCCeeechhhhhhH-HH
Confidence            34567777667888888889999994 5555555443333222 2222344433333   25788999999986532 22


Q ss_pred             EeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC
Q psy6859         130 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG  204 (261)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  204 (261)
                      ++..... .-.-+.|++....  .+.+...+.+.+++.. ..+.+...- .|...++++++.+.+. .+.++.|.
T Consensus       112 LE~gg~~-s~sll~wsKg~~e--l~ig~~~gn~viynhg-tsR~iiv~G-kh~RRgtq~av~lEd~-vil~dcd~  180 (615)
T KOG2247|consen  112 LESGGTS-SKSLLAWSKGTPE--LVIGNNAGNIVIYNHG-TSRRIIVMG-KHQRRGTQIAVTLEDY-VILCDCDN  180 (615)
T ss_pred             HhccCcc-hHHHHhhccCCcc--ccccccccceEEEecc-chhhhhhhc-ccccceeEEEecccce-eeecCcHH
Confidence            2211111 1112567777665  6666788999999988 665555551 3899999999998765 33444443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.20  E-value=0.54  Score=33.97  Aligned_cols=69  Identities=10%  Similarity=0.132  Sum_probs=45.2

Q ss_pred             EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE-------ee-----cCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          93 VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI-------KL-----DFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        93 ~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      +..+...+++++++    +.+|.+++||+.+++.+..-       ..     ......|..+..+.+|..  +++-+ +|
T Consensus        15 ~~~l~~~~~~Ll~i----T~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~P--iV~ls-ng   87 (219)
T PF07569_consen   15 VSFLECNGSYLLAI----TSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVP--IVTLS-NG   87 (219)
T ss_pred             eEEEEeCCCEEEEE----eCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCE--EEEEe-CC
Confidence            34466678888888    89999999999987653322       10     023346677777777764  33333 56


Q ss_pred             eEEEEEcc
Q psy6859         161 HVHIYDCK  168 (261)
Q Consensus       161 ~i~i~d~~  168 (261)
                      ..+.|+..
T Consensus        88 ~~y~y~~~   95 (219)
T PF07569_consen   88 DSYSYSPD   95 (219)
T ss_pred             CEEEeccc
Confidence            77888765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.91  E-value=0.72  Score=33.34  Aligned_cols=29  Identities=17%  Similarity=0.269  Sum_probs=24.0

Q ss_pred             EeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859          54 TNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus        54 ~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      +..+++++++...+|.+++||+.+++.+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~   46 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVL   46 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence            44577899999999999999999876544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.81  E-value=1.7  Score=30.99  Aligned_cols=51  Identities=16%  Similarity=0.307  Sum_probs=40.0

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS   66 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~   66 (261)
                      +.|+.+...+.|.+|++.....++...|..- +.|..+.++..|+|++|--.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence            4555556678899999996655777777744 88999999999999998653

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.76  E-value=0.42  Score=23.78  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=26.5

Q ss_pred             eCCCEEEEEe-CCCcEEEEEccccceeeeeeccCcce
Q psy6859          56 YNGTLLCTVA-SDKAMKVFDVINFDMINMIKLDFTPL   91 (261)
Q Consensus        56 ~~~~~l~s~~-~dg~v~~wd~~~~~~~~~~~~~~~~~   91 (261)
                      |++++|+++. .+++|.++|..+++.+..+.....|.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~   37 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPF   37 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCc
Confidence            5667666655 57899999999888888877655444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2377|consensus

Probab=93.56  E-value=3.2  Score=33.32  Aligned_cols=101  Identities=8%  Similarity=0.115  Sum_probs=66.8

Q ss_pred             cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec---cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         136 PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD---RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      .+.|.++.|++|.+.  ++.--.+..|.+++.. ..++.....   ...+..|....|+.. .-+|.....| +.+|-+.
T Consensus        66 ~G~I~SIkFSlDnki--lAVQR~~~~v~f~nf~-~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKI--LAVQRTSKTVDFCNFI-PDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL  140 (657)
T ss_pred             CCceeEEEeccCcce--EEEEecCceEEEEecC-CCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence            448999999999974  7777789999999986 333332221   133456888999876 5666666555 7788764


Q ss_pred             cccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEE
Q psy6859         213 KQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV  255 (261)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  255 (261)
                      ..              .+.++..+.|...|+=-.|.|+-+.++
T Consensus       141 pe--------------krslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  141 PE--------------KRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hh--------------hhhhhhhhhcccCccEEEEccccceEe
Confidence            32              334444555666666667777766543

>PHA02790 Kelch-like protein; Provisional

Probab=93.54  E-value=3.6  Score=33.88  Aligned_cols=66  Identities=6%  Similarity=-0.038  Sum_probs=32.9

Q ss_pred             eCCCEEEEEeCCC-----cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC--CCeEEEEEcCCCc
Q psy6859          56 YNGTLLCTVASDK-----AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD--SSRVHIYDCKGND  125 (261)
Q Consensus        56 ~~~~~l~s~~~dg-----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--d~~i~i~d~~~~~  125 (261)
                      .++..++.|+.++     .+..||..+++....-..+........... ++.+.++   |+.  ...+..||..+++
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~-~~~iYvi---GG~~~~~sve~ydp~~n~  342 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA-NNKLYVV---GGLPNPTSVERWFHGDAA  342 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE-CCEEEEE---CCcCCCCceEEEECCCCe
Confidence            3455667777543     466788877654433222222111112222 3445444   232  2467888876654

>KOG3630|consensus

Probab=93.42  E-value=0.3  Score=43.12  Aligned_cols=75  Identities=8%  Similarity=0.003  Sum_probs=53.2

Q ss_pred             eEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859           6 ITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM   83 (261)
Q Consensus         6 v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~   83 (261)
                      ..++.|+|  ....+....|+.|++..+.... .....+. -....++++|+|.|+.++.|-..|++.-|.. +.+....
T Consensus       158 ~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~-~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~  234 (1405)
T KOG3630|consen  158 QLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA-QNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSE  234 (1405)
T ss_pred             cccccccCCccchhhhhccccchhhhhhhhhh-hhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeec
Confidence            34677887  4556777888999888776431 2222222 4467899999999999999999999998886 4444333

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.19  E-value=0.28  Score=24.13  Aligned_cols=21  Identities=24%  Similarity=0.238  Sum_probs=15.5

Q ss_pred             ccceeeeeECCCCceEEEeec
Q psy6859         239 KTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       239 ~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ...-....|||||++|+-++.
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~   28 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSN   28 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEE
T ss_pred             CccccCEEEecCCCEEEEEec
Confidence            345578899999999987764

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.16  E-value=1.6  Score=28.58  Aligned_cols=98  Identities=13%  Similarity=0.083  Sum_probs=56.7

Q ss_pred             CCCCeEEEEEcCCC--------ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcc
Q psy6859         111 QDSSRVHIYDCKGN--------DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHT  182 (261)
Q Consensus       111 ~~d~~i~i~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  182 (261)
                      +..++|.|++....        ..+..+........+.+-.+.|+..+-+++.|+ ...+..||+. ....+..-  .-.
T Consensus        17 T~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~-~N~d~Fyk--e~~   92 (136)
T PF14781_consen   17 TTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE-NNSDLFYK--EVP   92 (136)
T ss_pred             ecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc-cCchhhhh--hCc
Confidence            56778888876633        344555554433333344455454445577776 6789999998 54444333  234


Q ss_pred             cCeEEEEEcC---CCCEEEEEcCCCeEEEeecc
Q psy6859         183 KPVVLIKFNP---IYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       183 ~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~  212 (261)
                      ..|+++.+-.   ...-|+..+.+..|.-||.+
T Consensus        93 DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~  125 (136)
T PF14781_consen   93 DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE  125 (136)
T ss_pred             cceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence            6677776632   22234444446778777754

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=93.05  E-value=4  Score=32.96  Aligned_cols=32  Identities=13%  Similarity=0.350  Sum_probs=25.2

Q ss_pred             ccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         182 TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       182 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      +..|.+++..+..+.|++...+|.|.+|++..
T Consensus       189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            34589999999889999999999999999964

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.95  E-value=2.9  Score=31.07  Aligned_cols=149  Identities=17%  Similarity=0.089  Sum_probs=79.2

Q ss_pred             ceeEEEEeeCCCEEEEEe--C-CCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEE-EcCC
Q psy6859          48 VIHSICTNYNGTLLCTVA--S-DKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIY-DCKG  123 (261)
Q Consensus        48 ~v~~~~~~~~~~~l~s~~--~-dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~-d~~~  123 (261)
                      .+.+.+++++++.++...  . ...+.++.  .+....... .......-.+.+++ .+.++   ...+....++ +...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g-~~W~v---~~~~~~~~~~~~~~~   97 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDG-WVWTV---DDGSGGVRVVRDSAS   97 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCC-CEEEE---EcCCCceEEEEecCC
Confidence            688999999998877665  2 23444444  333222221 11122333444443 33333   1334444444 2233


Q ss_pred             Cce-eeEEeecCCcceEEEEEEeCCCCceEEEE-ecCCCeEEEEEccCC--C------ccceeeccCcccCeEEEEEcCC
Q psy6859         124 NDM-INMIKLDFTPLTVECIHYLGDAIPTAAVS-DQDSSHVHIYDCKGN--G------TPLHVLDRLHTKPVVLIKFNPI  193 (261)
Q Consensus       124 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~--~------~~~~~~~~~~~~~v~~~~~~~~  193 (261)
                      +.. ...+........|..+.++||+...+++. ...++.|.+--+...  +      .++.... .....++++.|.++
T Consensus        98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~~~  176 (253)
T PF10647_consen   98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWSDD  176 (253)
T ss_pred             CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeecCC
Confidence            322 22222221112799999999999876665 233467777654311  2      1112221 33567899999999


Q ss_pred             CCEEEEEcCCC
Q psy6859         194 YQVVVSVDKAG  204 (261)
Q Consensus       194 ~~~l~~~~~dg  204 (261)
                      +.+++.+...+
T Consensus       177 ~~L~V~~~~~~  187 (253)
T PF10647_consen  177 STLVVLGRSAG  187 (253)
T ss_pred             CEEEEEeCCCC
Confidence            99776665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=92.88  E-value=5.4  Score=33.95  Aligned_cols=164  Identities=13%  Similarity=0.114  Sum_probs=88.0

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeec-cccc-eeEEEEee------CCCEEEEEeC-CC---c
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRS-HLGV-IHSICTNY------NGTLLCTVAS-DK---A   69 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~-v~~~~~~~------~~~~l~s~~~-dg---~   69 (261)
                      ++.|-.|.|.+ ++.+++.-.+|.|.+|+.+....+.+..+.. +... +.+ +|-+      ...++++.+. ++   .
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence            35688899997 8889999999999999994432222222221 1111 111 2222      2335555444 32   4


Q ss_pred             EEEEEcc-ccceeeeee---ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC--Cc--ceEEE
Q psy6859          70 MKVFDVI-NFDMINMIK---LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF--TP--LTVEC  141 (261)
Q Consensus        70 v~~wd~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~--~~--~~~~~  141 (261)
                      .+++.+. +...+.++.   .+........+......++..     .+++|.+|++...+..+.+....  ..  ..+.+
T Consensus       208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-----~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vS  282 (670)
T PF10395_consen  208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-----SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVS  282 (670)
T ss_pred             EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-----eCCEEEEEEcCCceEEEEEEechhhccccccceE
Confidence            6777771 222222221   222222222333333344443     57899999999888877777651  11  12223


Q ss_pred             EE-EeCCCCceEEEEecCCCeEEEEEccCCCccceeec
Q psy6859         142 IH-YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       142 ~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  178 (261)
                      +. .+++.   ++++  .++.|++.|+. -...+.+++
T Consensus       283 l~~~s~nR---vLLs--~~nkIyLld~~-~~siLse~~  314 (670)
T PF10395_consen  283 LKPPSPNR---VLLS--VNNKIYLLDLK-FESILSEFE  314 (670)
T ss_pred             eecCCCCe---EEEE--cCCEEEEEeeh-hhhhhhhhh
Confidence            32 22333   2443  37899999998 555555554

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.82  E-value=0.6  Score=22.87  Aligned_cols=29  Identities=7%  Similarity=0.077  Sum_probs=19.0

Q ss_pred             cccCeEEEEEcCCCCEEEEEc-CC--CeEEEe
Q psy6859         181 HTKPVVLIKFNPIYQVVVSVD-KA--GILEYW  209 (261)
Q Consensus       181 ~~~~v~~~~~~~~~~~l~~~~-~d--g~i~iw  209 (261)
                      ....-....|+|||+.|+-.+ .+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            445667889999999775444 55  665555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1900|consensus

Probab=92.73  E-value=7.6  Score=35.56  Aligned_cols=141  Identities=9%  Similarity=0.141  Sum_probs=81.6

Q ss_pred             eCCCcEEEEEccccceeeeeeccCccee-EEEEeecC-------CceeeeeeecCCCCeEEEEEcC----CCc---eeeE
Q psy6859          65 ASDKAMKVFDVINFDMINMIKLDFTPLT-VECIHYLG-------DAIPTAAVSDQDSSRVHIYDCK----GND---MINM  129 (261)
Q Consensus        65 ~~dg~v~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~s~~~d~~i~i~d~~----~~~---~~~~  129 (261)
                      +-|+.+.+|+.+++.....+..-.+.+. +..+.|..       +.++.+    ..--.|.++-+.    ++.   ....
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvv----aT~~ei~ilgV~~~~~~~~~~~f~~~  171 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVV----ATPVEIVILGVSFDEFTGELSIFNTS  171 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEe----cccceEEEEEEEeccccCcccccccc
Confidence            4677899999998666655543333222 22222221       222333    334445554332    111   1122


Q ss_pred             EeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC---CC---c--------------cce---eeccCcccCeE
Q psy6859         130 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG---NG---T--------------PLH---VLDRLHTKPVV  186 (261)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~---~--------------~~~---~~~~~~~~~v~  186 (261)
                      ++....+..+.++....+|.   +.-++.||.+  |.+..   .+   +              .+.   .+...+..+|.
T Consensus       172 ~~i~~dg~~V~~I~~t~nGR---IF~~G~dg~l--yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~  246 (1311)
T KOG1900|consen  172 FKISVDGVSVNCITYTENGR---IFFAGRDGNL--YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIR  246 (1311)
T ss_pred             eeeecCCceEEEEEeccCCc---EEEeecCCCE--EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcce
Confidence            44445667899999888887   4444457744  43320   11   1              011   11114577999


Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         187 LIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       187 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      .+........+++-++.|+|.+||+..+
T Consensus       247 qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  247 QITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             eeEeccccceeeeeccCceEEEEEccCC
Confidence            9999988889999999999999999764

>KOG2247|consensus

Probab=92.69  E-value=0.019  Score=45.43  Aligned_cols=126  Identities=12%  Similarity=0.111  Sum_probs=80.7

Q ss_pred             CCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEE
Q psy6859         111 QDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKF  190 (261)
Q Consensus       111 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~  190 (261)
                      ..+..+..||-... ......   .+.....++|+.++... ++.+-..+.+.+||+. + +...+++.+....-.-+.|
T Consensus        53 ca~tiv~~YD~agq-~~le~n---~tg~aldm~wDkegdvl-avlAek~~piylwd~n-~-eytqqLE~gg~~s~sll~w  125 (615)
T KOG2247|consen   53 CANTIVIYYDKAGQ-VILELN---PTGKALDMAWDKEGDVL-AVLAEKTGPIYLWDVN-S-EYTQQLESGGTSSKSLLAW  125 (615)
T ss_pred             hhhhHHHhhhhhcc-eecccC---CchhHhhhhhccccchh-hhhhhcCCCeeechhh-h-hhHHHHhccCcchHHHHhh
Confidence            56777788885433 222222   34456778888777654 4445567899999996 3 2333333122222222789


Q ss_pred             cCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         191 NPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       191 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ++....++.+...|.+.|++...               .+.+.....|..++++++|.+.+..+ .++.
T Consensus       126 sKg~~el~ig~~~gn~viynhgt---------------sR~iiv~Gkh~RRgtq~av~lEd~vi-l~dc  178 (615)
T KOG2247|consen  126 SKGTPELVIGNNAGNIVIYNHGT---------------SRRIIVMGKHQRRGTQIAVTLEDYVI-LCDC  178 (615)
T ss_pred             ccCCccccccccccceEEEeccc---------------hhhhhhhcccccceeEEEecccceee-ecCc
Confidence            99999999999999999998743               34444444488999999999986544 3443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=92.65  E-value=6.7  Score=34.54  Aligned_cols=113  Identities=12%  Similarity=0.037  Sum_probs=67.6

Q ss_pred             CeEEEEEcC--CCeEEEecCCCeEEEEeccCCce---eeeEEeecccc----------ceeEEEEeeCCCEEEEEeCCCc
Q psy6859           5 PITHVVVTK--TDFVITASNDGHIKFWKKQEEGI---EFVKHFRSHLG----------VIHSICTNYNGTLLCTVASDKA   69 (261)
Q Consensus         5 ~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~---~~~~~~~~~~~----------~v~~~~~~~~~~~l~s~~~dg~   69 (261)
                      +...++|+|  ...||.....|.-.||++.....   ........+.+          .-..+.|.++-+.|+.++.. .
T Consensus       147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~  225 (765)
T PF10214_consen  147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-K  225 (765)
T ss_pred             ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-c
Confidence            556899999  56899999999999999922110   01111111112          22478898887788887664 6


Q ss_pred             EEEEEccccceeeeeeccCcceeEEEEeecC---CceeeeeeecCCCCeEEEEEcCC
Q psy6859          70 MKVFDVINFDMINMIKLDFTPLTVECIHYLG---DAIPTAAVSDQDSSRVHIYDCKG  123 (261)
Q Consensus        70 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~d~~i~i~d~~~  123 (261)
                      +.++|+.+......+........+..+....   ..++.+     ....|...++..
T Consensus       226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-----Ts~eiiw~~~~~  277 (765)
T PF10214_consen  226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-----TSKEIIWLDVKS  277 (765)
T ss_pred             eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-----ecCeEEEEEccC
Confidence            8899998765533222222333344444332   244443     347777777776

These proteins are found in fungi.

>PRK13684 Ycf48-like protein; Provisional

Probab=92.23  E-value=4.5  Score=31.53  Aligned_cols=153  Identities=10%  Similarity=0.028  Sum_probs=75.6

Q ss_pred             ccceeEEEEeeCCCEEEEEeCCCcEEE-EEccccceeeeee-ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC
Q psy6859          46 LGVIHSICTNYNGTLLCTVASDKAMKV-FDVINFDMINMIK-LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG  123 (261)
Q Consensus        46 ~~~v~~~~~~~~~~~l~s~~~dg~v~~-wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~  123 (261)
                      .+.+..+.+.|++.++++ +..|.+.. ++ ..++.-.... ........+.+.+++..+ .+    +..|.+.+=....
T Consensus       172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~-~v----g~~G~~~~~s~d~  244 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLW-ML----ARGGQIRFNDPDD  244 (334)
T ss_pred             cceEEEEEECCCCeEEEE-eCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEE-EE----ecCCEEEEccCCC
Confidence            356788888888766655 45555432 22 1222222222 122233444444555433 33    4556554322333


Q ss_pred             CceeeEEeec--CCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec--cCcccCeEEEEEcCCCCEEEE
Q psy6859         124 NDMINMIKLD--FTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD--RLHTKPVVLIKFNPIYQVVVS  199 (261)
Q Consensus       124 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~  199 (261)
                      +..-.....+  .....+..+.+.+++.   ++..+.+|.+.. ... .++.-...+  ..-....+.+.|..+++.+++
T Consensus       245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~---~~~~G~~G~v~~-S~d-~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (334)
T PRK13684        245 LESWSKPIIPEITNGYGYLDLAYRTPGE---IWAGGGNGTLLV-SKD-GGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL  319 (334)
T ss_pred             CCccccccCCccccccceeeEEEcCCCC---EEEEcCCCeEEE-eCC-CCCCCeECCcCCCCCcceEEEEEeCCCceEEE
Confidence            3322211111  0112467788888765   333445676553 333 444433332  022345778888777766665


Q ss_pred             EcCCCeEEEeec
Q psy6859         200 VDKAGILEYWSG  211 (261)
Q Consensus       200 ~~~dg~i~iwd~  211 (261)
                      | ..|.|.-|+-
T Consensus       320 G-~~G~il~~~~  330 (334)
T PRK13684        320 G-QRGVLLRYVG  330 (334)
T ss_pred             C-CCceEEEecC
Confidence            4 5788877763

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.07  E-value=4.1  Score=30.76  Aligned_cols=101  Identities=14%  Similarity=0.088  Sum_probs=58.0

Q ss_pred             CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe------CCCcEEEEEccccceeeeeecc-----Ccce
Q psy6859          23 DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA------SDKAMKVFDVINFDMINMIKLD-----FTPL   91 (261)
Q Consensus        23 d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~v~~wd~~~~~~~~~~~~~-----~~~~   91 (261)
                      -..|++||..+.  +...--.+-.+.|+.+.|..+.+.++.|.      ....+..||+.+.... .+...     ..++
T Consensus        15 C~~lC~yd~~~~--qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv   91 (281)
T PF12768_consen   15 CPGLCLYDTDNS--QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPV   91 (281)
T ss_pred             CCEEEEEECCCC--EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcE
Confidence            457999998876  44433344568899999987777777664      3456888998765432 22221     1233


Q ss_pred             eEEEE-eecCCceeeeeeecCCCCeEEEEEcCCCce
Q psy6859          92 TVECI-HYLGDAIPTAAVSDQDSSRVHIYDCKGNDM  126 (261)
Q Consensus        92 ~~~~~-~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~  126 (261)
                      ....+ ..+...+....-+...+..|..||=.+...
T Consensus        92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~  127 (281)
T PF12768_consen   92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSS  127 (281)
T ss_pred             EEEEeeccCCceEEEeceecCCCceEEEEcCCceEe
Confidence            33333 224444443322234556677787554433

>KOG2280|consensus

Probab=91.97  E-value=7.3  Score=33.42  Aligned_cols=180  Identities=12%  Similarity=0.091  Sum_probs=85.2

Q ss_pred             CeEEEEEcCCCeEEEecCCCeEEEEeccCCceeee-EEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859           5 PITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFV-KHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM   83 (261)
Q Consensus         5 ~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~   83 (261)
                      ++-.+.|+..+.|+....+|++.+|++-....+.. .-+......|..+.+..+|=.+++  .+|.+.+-+-.......+
T Consensus        85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~  162 (829)
T KOG2280|consen   85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRK  162 (829)
T ss_pred             CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhh
Confidence            56688899877888899999999999875321111 001222344666666666633333  344544433222112222


Q ss_pred             ee-ccC--cceeEE-EEeecCCceeeeeeecCCCCe--EEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          84 IK-LDF--TPLTVE-CIHYLGDAIPTAAVSDQDSSR--VHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        84 ~~-~~~--~~~~~~-~~~~~~~~~~~~~~s~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ++ .+.  .+..+. .+.++.......    .-+-.  ..++..... ..+..........+..+..+|+..++.+.  .
T Consensus       163 ~~diP~~~~~~~~Wt~~~~~~~~~~ll----~v~~~v~~~~~q~~~~-~~q~~~~~~~~~~~~ki~VS~n~~~laLy--t  235 (829)
T KOG2280|consen  163 MPDIPYNELPKSCWTVFQPHRQSTILL----DVDVAVGLHICQVEES-RVQLHALSWPNSSVVKISVSPNRRFLALY--T  235 (829)
T ss_pred             CCCCCCccCCCcceeEecCCCcceeEE----eechhhhhcccceecc-cccccccCCCCceEEEEEEcCCcceEEEE--e
Confidence            21 111  111111 222211111111    00100  011111111 11111111122467888889988874444  4


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY  194 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  194 (261)
                      ..|.|.+-+.. ..+.+..+.-....+...++|.-+.
T Consensus       236 ~~G~i~~vs~D-~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  236 ETGKIWVVSID-LSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             cCCcEEEEecc-hhhhhhccCCCCCCchHhceeecCC
Confidence            67888888887 6666655541222333366665444

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.67  E-value=2.6  Score=27.61  Aligned_cols=112  Identities=12%  Similarity=0.121  Sum_probs=64.5

Q ss_pred             EEEEcC-CCeEEEecCCCeEEEEeccCCc------eeeeEEeeccccceeEEEEee-----CCCEEEEEeCCCcEEEEEc
Q psy6859           8 HVVVTK-TDFVITASNDGHIKFWKKQEEG------IEFVKHFRSHLGVIHSICTNY-----NGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~~d~~i~iw~~~~~~------~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~v~~wd~   75 (261)
                      .-.|.. ...|+.++.-|.|.|.+.....      ...++.+. -...|++|+--+     +...|+.|+. ..+..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            345655 5578888999999999876431      12334443 446777776543     2346666655 47899999


Q ss_pred             cccceeeeeeccCcceeEEEE---eecCCceeeeeeecCCCCeEEEEEcCCCce
Q psy6859          76 INFDMINMIKLDFTPLTVECI---HYLGDAIPTAAVSDQDSSRVHIYDCKGNDM  126 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~  126 (261)
                      .+...+..-..+. ...++.+   ......++.+    +.+..|.-||.+..+.
T Consensus        81 ~~N~d~Fyke~~D-Gvn~i~~g~~~~~~~~l~iv----GGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   81 ENNSDLFYKEVPD-GVNAIVIGKLGDIPSPLVIV----GGNCSIQGFDYEGNEI  129 (136)
T ss_pred             ccCchhhhhhCcc-ceeEEEEEecCCCCCcEEEE----CceEEEEEeCCCCcEE
Confidence            8776544333222 2222222   2223344444    5666677777665543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.39  E-value=6  Score=31.29  Aligned_cols=59  Identities=12%  Similarity=0.108  Sum_probs=30.9

Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEE-EEEccCCC----c---cceeeccC---cccCeEEEEEcCCCCEEEEEc
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVH-IYDCKGNG----T---PLHVLDRL---HTKPVVLIKFNPIYQVVVSVD  201 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~-i~d~~~~~----~---~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~  201 (261)
                      ....+.+.+++   ++++ ... .|. +.|....+    +   .+..+...   +......++|.|||.+.++-+
T Consensus        73 ~p~Gi~~~~~G---lyV~-~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        73 MVTGLAVAVGG---VYVA-TPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             CccceeEecCC---EEEe-CCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            34778888888   2443 333 444 43543211    1   11223211   234577899999998555444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.37  E-value=1  Score=22.33  Aligned_cols=22  Identities=5%  Similarity=-0.055  Sum_probs=15.8

Q ss_pred             CCCCEEEEEc-CCCeEEEeeccc
Q psy6859         192 PIYQVVVSVD-KAGILEYWSGYK  213 (261)
Q Consensus       192 ~~~~~l~~~~-~dg~i~iwd~~~  213 (261)
                      |++++|+++. .++.|.++|..+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~   23 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT   23 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC
Confidence            5777665544 688999999843

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.14  E-value=5.4  Score=30.31  Aligned_cols=138  Identities=14%  Similarity=0.189  Sum_probs=0.0

Q ss_pred             eEEEEEcCCCceeeEEeecC----CcceEEEEEEeCCCC----ceEEEEecCCCeEEEEEccCCCccceeeccCc-----
Q psy6859         115 RVHIYDCKGNDMINMIKLDF----TPLTVECIHYLGDAI----PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLH-----  181 (261)
Q Consensus       115 ~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----  181 (261)
                      .|.+||+++.+.++.+..+.    ....+..+.+.....    ..+.++-...+-|.+||+. +++..+.+. .+     
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~-~~~s~Rv~~-~~~~~~p  112 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLA-TGKSWRVLH-NSFSPDP  112 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETT-TTEEEEEET-CGCTTS-
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEcc-CCcEEEEec-CCcceec


Q ss_pred             --------------ccCeEEEEEcC---CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceee
Q psy6859         182 --------------TKPVVLIKFNP---IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSG  244 (261)
Q Consensus       182 --------------~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  244 (261)
                                    ...+..++.+|   +++.|+-....+ -++|.+.+.....+....-. .....+..+-........
T Consensus       113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~-~~~~~v~~lG~k~~~s~g  190 (287)
T PF03022_consen  113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQ-ALASQVQDLGDKGSQSDG  190 (287)
T ss_dssp             SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH--HHHT-EEEEE---SECE
T ss_pred             cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccc-cccccceeccccCCCCce


Q ss_pred             eeECCCCceEEE
Q psy6859         245 LSFSPDGNKFVT  256 (261)
Q Consensus       245 ~~~s~~~~~l~s  256 (261)
                      ++.+++|.++++
T Consensus       191 ~~~D~~G~ly~~  202 (287)
T PF03022_consen  191 MAIDPNGNLYFT  202 (287)
T ss_dssp             EEEETTTEEEEE
T ss_pred             EEECCCCcEEEe

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG4499|consensus

Probab=91.04  E-value=4.7  Score=29.38  Aligned_cols=94  Identities=14%  Similarity=0.080  Sum_probs=59.2

Q ss_pred             EEEEEeCCCCceEEEEecCCCeEEEEEccC-CC-----ccceeecc--C-cccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859         140 ECIHYLGDAIPTAAVSDQDSSHVHIYDCKG-NG-----TPLHVLDR--L-HTKPVVLIKFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~-----~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      ..++|+.+.+. +.+.-+.+-.|.-||..- ++     +.+..++.  . .....-.++...+|.+.++.-..++|...|
T Consensus       161 Ngl~Wd~d~K~-fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSDAKK-FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccccCcE-EEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            45677766553 456666677787777321 33     22222220  0 111223456666777777777788888888


Q ss_pred             cccccccCCeeeeeecccccceeecCCCccceeeeeECC
Q psy6859         211 GYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP  249 (261)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  249 (261)
                      .               .+++.+.+++-....|++++|--
T Consensus       240 p---------------~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  240 P---------------TTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             C---------------CCCcEEEEEEcCCCceEEEEecC
Confidence            8               45788888887888999999964

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=90.91  E-value=8.5  Score=32.14  Aligned_cols=117  Identities=10%  Similarity=0.076  Sum_probs=65.8

Q ss_pred             CCCCeEEEEEcC-CC----eEEEecCCCeEEEEeccCCc---eeeeEEeec-ccc--c--eeEEEEeeCCCEEEEEeCCC
Q psy6859           2 HRSPITHVVVTK-TD----FVITASNDGHIKFWKKQEEG---IEFVKHFRS-HLG--V--IHSICTNYNGTLLCTVASDK   68 (261)
Q Consensus         2 H~~~v~~~~~~~-~~----~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~-~~~--~--v~~~~~~~~~~~l~s~~~dg   68 (261)
                      .-+-|..+.|.| +.    -|++......|.||.+....   .+.+..-.. ...  +  -..+.|+|....|+.-....
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d  134 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD  134 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence            345689999998 31    45556677899999885311   011111111 111  1  24678999887776655544


Q ss_pred             cEEEEEcccc--ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC
Q psy6859          69 AMKVFDVINF--DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK  122 (261)
Q Consensus        69 ~v~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~  122 (261)
                      .-.++++...  +....++ ....+.+.+|..+|++++.+.   +..=.-++||-.
T Consensus       135 vSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAv---GSsLHSyiWd~~  186 (671)
T PF15390_consen  135 VSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAV---GSSLHSYIWDSA  186 (671)
T ss_pred             eeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEe---CCeEEEEEecCc
Confidence            4445666533  2333333 334467777778887776541   334455677643

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.87  E-value=11  Score=33.22  Aligned_cols=113  Identities=12%  Similarity=0.048  Sum_probs=66.8

Q ss_pred             CCEEEEEeCCCcEEEEEccccceeeeeeccCccee------E--EEEee----------------cCCceeeeeeecCCC
Q psy6859          58 GTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLT------V--ECIHY----------------LGDAIPTAAVSDQDS  113 (261)
Q Consensus        58 ~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~------~--~~~~~----------------~~~~~~~~~~s~~~d  113 (261)
                      +..++.++.++.|.-.|..+|+.+..+........      +  ..+..                .+..++.    ++.|
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~----~T~D  269 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL----PTSD  269 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE----ecCC
Confidence            44777788889999999999998888764332110      0  11111                1223333    3789


Q ss_pred             CeEEEEEcCCCceeeEEeecCC----------cceEEEEEEeC---CCCceEEEEec----------CCCeEEEEEccCC
Q psy6859         114 SRVHIYDCKGNDMINMIKLDFT----------PLTVECIHYLG---DAIPTAAVSDQ----------DSSHVHIYDCKGN  170 (261)
Q Consensus       114 ~~i~i~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~----------~d~~i~i~d~~~~  170 (261)
                      +.+.-.|.++++.+..+.....          +.....+.-.|   ++   .++.|+          -+|.|+-+|.+ +
T Consensus       270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g---~VIvG~~v~d~~~~~~~~G~I~A~Da~-T  345 (764)
T TIGR03074       270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT---TVVIGGRVADNYSTDEPSGVIRAFDVN-T  345 (764)
T ss_pred             CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECC---EEEEEecccccccccCCCcEEEEEECC-C
Confidence            9999999999988766532110          00000011111   22   133442          26889999999 9


Q ss_pred             Cccceeec
Q psy6859         171 GTPLHVLD  178 (261)
Q Consensus       171 ~~~~~~~~  178 (261)
                      ++.+..+.
T Consensus       346 Gkl~W~~~  353 (764)
T TIGR03074       346 GALVWAWD  353 (764)
T ss_pred             CcEeeEEe
Confidence            99888775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1983|consensus

Probab=90.07  E-value=15  Score=33.53  Aligned_cols=26  Identities=15%  Similarity=0.218  Sum_probs=23.0

Q ss_pred             cCCCCEEEEEcCCCeEEEeecccccc
Q psy6859         191 NPIYQVVVSVDKAGILEYWSGYKQEF  216 (261)
Q Consensus       191 ~~~~~~l~~~~~dg~i~iwd~~~~~~  216 (261)
                      ++++..++++..||.+..||...+..
T Consensus       243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  243 SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccCCceEEEEEecCCEEeeecCCCce
Confidence            78899999999999999999987543

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.61  E-value=3.6  Score=33.02  Aligned_cols=157  Identities=10%  Similarity=0.111  Sum_probs=81.5

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecccc----cee-EEEEeeCCCEEEEEeCCCcEEEE-Eccc
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLG----VIH-SICTNYNGTLLCTVASDKAMKVF-DVIN   77 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~l~s~~~dg~v~~w-d~~~   77 (261)
                      +|..+-..| ++.+..-+. .++.++++.+...+..+......+    .|+ .+..-..|.-++.++.||-|.-| |++.
T Consensus       222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~  300 (733)
T COG4590         222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR  300 (733)
T ss_pred             chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence            344556677 665554443 678888887653332222221111    222 22223456668888899988877 4443


Q ss_pred             c-c----eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          78 F-D----MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        78 ~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      + +    .++.++....+.....-....+-++..    +.+|++..+.-...+.+-.-....   .+.-++++|.+.+  
T Consensus       301 ~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l----~~~G~L~~f~st~~~~lL~~~~~~---~~~~~~~Sp~~~~--  371 (733)
T COG4590         301 DGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSL----YRNGTLQSFYSTSEKLLLFERAYQ---APQLVAMSPNQAY--  371 (733)
T ss_pred             CCCCcceeeeccccCcccceeeccccccceEEEE----cCCCceeeeecccCcceehhhhhc---CcceeeeCcccch--
Confidence            2 1    233333332222222222222333444    678888777655443332222111   3456778888876  


Q ss_pred             EEEecCCCeEEEEEccCCCcc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTP  173 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~  173 (261)
                      +++- +.|.++++.+. +..+
T Consensus       372 Ll~e-~~gki~~~~l~-Nr~P  390 (733)
T COG4590         372 LLSE-DQGKIRLAQLE-NRNP  390 (733)
T ss_pred             heee-cCCceEEEEec-CCCC
Confidence            4433 46789999887 4444

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.60  E-value=1.8  Score=30.85  Aligned_cols=59  Identities=14%  Similarity=0.084  Sum_probs=38.7

Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         185 VVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       185 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      ...++-.+. +.|+.+.....|.+|++.+             ...+.+..+.. -+.|..+.++..|+||++-=
T Consensus        20 P~~~c~~g~-d~Lfva~~g~~Vev~~l~~-------------~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   20 PTAVCCGGP-DALFVAASGCKVEVYDLEQ-------------EECPLLCTFST-VGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             cceeeccCC-ceEEEEcCCCEEEEEEccc-------------CCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence            334444332 3444435567899999963             22455555654 37889999999999999853

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.47  E-value=3.4  Score=33.19  Aligned_cols=155  Identities=14%  Similarity=0.128  Sum_probs=85.0

Q ss_pred             ccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee-eeeccCcce------e-EEEEeecCCceeeeeeecCCCCeEE
Q psy6859          46 LGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN-MIKLDFTPL------T-VECIHYLGDAIPTAAVSDQDSSRVH  117 (261)
Q Consensus        46 ~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~-~~~~~~~~~------~-~~~~~~~~~~~~~~~~s~~~d~~i~  117 (261)
                      ...|..+-..||++.+..-+. .++.++++.+..... ++. ...+.      . ...+-..+..+...    +.||.|.
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~-~dspg~~~~~Vte~l~lL~Gg~SLLv~----~~dG~vs  293 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLV-DDSPGDSRHQVTEQLYLLSGGFSLLVV----HEDGLVS  293 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhh-hcCCCchHHHHHHHHHHHhCceeEEEE----cCCCcee
Confidence            345667778899998877655 578888886543221 111 11111      0 00011122333333    7899888


Q ss_pred             EE-EcCCCce-----eeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc
Q psy6859         118 IY-DCKGNDM-----INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN  191 (261)
Q Consensus       118 i~-d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  191 (261)
                      -| |.+....     ++.++.  .+..+..+.  |+.....+++-...|++..+... ..+++ -++ .--..+.-+++|
T Consensus       294 QWFdvr~~~~p~l~h~R~f~l--~pa~~~~l~--pe~~rkgF~~l~~~G~L~~f~st-~~~~l-L~~-~~~~~~~~~~~S  366 (733)
T COG4590         294 QWFDVRRDGQPHLNHIRNFKL--APAEVQFLL--PETNRKGFYSLYRNGTLQSFYST-SEKLL-LFE-RAYQAPQLVAMS  366 (733)
T ss_pred             eeeeeecCCCCcceeeecccc--Ccccceeec--cccccceEEEEcCCCceeeeecc-cCcce-ehh-hhhcCcceeeeC
Confidence            77 5553321     122222  222333332  33333346666778888887764 33332 222 222356678999


Q ss_pred             CCCCEEEEEcCCCeEEEeecccc
Q psy6859         192 PIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       192 ~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      |++.+|++-. .|.++++.+++.
T Consensus       367 p~~~~Ll~e~-~gki~~~~l~Nr  388 (733)
T COG4590         367 PNQAYLLSED-QGKIRLAQLENR  388 (733)
T ss_pred             cccchheeec-CCceEEEEecCC
Confidence            9999998765 567999988753

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.32  E-value=14  Score=32.06  Aligned_cols=74  Identities=9%  Similarity=-0.020  Sum_probs=48.8

Q ss_pred             ceEEEEEEeCCCCceEEEEecCCCeEEEEEccC-------C------------CccceeeccCcccCeEEEEEc--CCCC
Q psy6859         137 LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG-------N------------GTPLHVLDRLHTKPVVLIKFN--PIYQ  195 (261)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------~------------~~~~~~~~~~~~~~v~~~~~~--~~~~  195 (261)
                      ..|.-+....=+..-+++.+.+||.|.+|.+..       .            -+|...+  ......++++++  ...+
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~~~r  178 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYKKSR  178 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecCcce
Confidence            345555444333334578888999999997630       0            0122222  235578999998  7888


Q ss_pred             EEEEEcCCCeEEEeecc
Q psy6859         196 VVVSVDKAGILEYWSGY  212 (261)
Q Consensus       196 ~l~~~~~dg~i~iwd~~  212 (261)
                      +||+++....|.||-..
T Consensus       179 lIAVSsNs~~VTVFaf~  195 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFA  195 (717)
T ss_pred             EEEEecCCceEEEEEEe
Confidence            99999988889888654

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.15  E-value=3.9  Score=34.34  Aligned_cols=72  Identities=8%  Similarity=0.013  Sum_probs=41.1

Q ss_pred             CCCEEEEEeCCCcEEEEEccc----cceeeeeec----------------------cCcceeEEEEee----cCCceeee
Q psy6859          57 NGTLLCTVASDKAMKVFDVIN----FDMINMIKL----------------------DFTPLTVECIHY----LGDAIPTA  106 (261)
Q Consensus        57 ~~~~l~s~~~dg~v~~wd~~~----~~~~~~~~~----------------------~~~~~~~~~~~~----~~~~~~~~  106 (261)
                      +...++.+..||.+.......    +........                      .........+..    ....++++
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            666788888999888877654    211111110                      011222333333    44555566


Q ss_pred             eeecCCCCeEEEEEcCCCceeeEEee
Q psy6859         107 AVSDQDSSRVHIYDCKGNDMINMIKL  132 (261)
Q Consensus       107 ~~s~~~d~~i~i~d~~~~~~~~~~~~  132 (261)
                          +.|+++++||+.+++++.....
T Consensus       237 ----~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  237 ----SRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             ----ETTSEEEEEETTTTCEEEEEET
T ss_pred             ----eCCCeEEEEECCCCeEEEEecc
Confidence                8999999999999998766543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG4460|consensus

Probab=88.91  E-value=12  Score=30.89  Aligned_cols=25  Identities=8%  Similarity=0.098  Sum_probs=16.8

Q ss_pred             eeEEEEeeCCCEEEEEeCCCcEEEE
Q psy6859          49 IHSICTNYNGTLLCTVASDKAMKVF   73 (261)
Q Consensus        49 v~~~~~~~~~~~l~s~~~dg~v~~w   73 (261)
                      |..+..++.|..++-++.+|.+.++
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEE
Confidence            5556667777777777777755443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=88.60  E-value=11  Score=30.30  Aligned_cols=184  Identities=15%  Similarity=0.218  Sum_probs=101.6

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc---------------
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD---------------   79 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~---------------   79 (261)
                      ++++.=+.||.+.+++-+.-  ...+.+.. ---.-.+.|.+....|++++.+..+.-|....-.               
T Consensus       146 ~~IcVQS~DG~L~~feqe~~--~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~  222 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESF--AFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQD  222 (418)
T ss_pred             eEEEEEecCceEEEEeCCcE--EEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccc
Confidence            47788899999999997653  33333332 1112346777877789999988888888753210               


Q ss_pred             --------eeeeeeccCcceeEEEEee--cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEE----e
Q psy6859          80 --------MINMIKLDFTPLTVECIHY--LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHY----L  145 (261)
Q Consensus        80 --------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~  145 (261)
                              ...++.+......+..+..  ....++.+     ....+...+. ++......+....+........    .
T Consensus       223 ~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvL-----ger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~  296 (418)
T PF14727_consen  223 ISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVL-----GERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNE  296 (418)
T ss_pred             ccccccccceeEEECCceeEEEEEEEcCCCCceEEEE-----ecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccC
Confidence                    0111222222222222222  22223333     3556666665 3455555666555543333333    1


Q ss_pred             CCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEE---EcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         146 GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIK---FNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       146 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      |... ..++.++.++.+.||.   ..+++..-+ ....+| ++.   |..-.-.|++-+.+|.+.+-=+-+
T Consensus       297 ~~~~-~~llV~t~t~~LlVy~---d~~L~WsA~-l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  297 PSTR-LNLLVGTHTGTLLVYE---DTTLVWSAQ-LPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             CCCc-eEEEEEecCCeEEEEe---CCeEEEecC-CCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            2211 2366677899999996   345555554 222332 333   323334788888899998887654

>smart00564 PQQ beta-propeller repeat

Probab=88.01  E-value=1.7  Score=20.11  Aligned_cols=24  Identities=8%  Similarity=0.115  Sum_probs=20.0

Q ss_pred             EEEEEeCCCcEEEEEccccceeee
Q psy6859          60 LLCTVASDKAMKVFDVINFDMINM   83 (261)
Q Consensus        60 ~l~s~~~dg~v~~wd~~~~~~~~~   83 (261)
                      .++.++.+|.+..+|..+|+.+..
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            677788899999999988887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=87.75  E-value=3.2  Score=25.07  Aligned_cols=18  Identities=28%  Similarity=0.659  Sum_probs=13.7

Q ss_pred             cceeeeeECCCCceEEEe
Q psy6859         240 TYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~  257 (261)
                      ...+.++.+||+.+|+.+
T Consensus        57 ~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   57 YFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             SSEEEEEE-TTSSEEEEE
T ss_pred             CccCeEEEcCCCCEEEEE
Confidence            356899999999988765

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.45  E-value=7.6  Score=26.91  Aligned_cols=32  Identities=6%  Similarity=0.048  Sum_probs=24.8

Q ss_pred             ceEEEEEEeCCCC----ceEEEEecCCCeEEEEEcc
Q psy6859         137 LTVECIHYLGDAI----PTAAVSDQDSSHVHIYDCK  168 (261)
Q Consensus       137 ~~~~~~~~~~~~~----~~~~~~~~~d~~i~i~d~~  168 (261)
                      ..+..++|+|.|.    ..++++-+.++.|.+|...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            3789999998553    4567777889999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1896|consensus

Probab=87.42  E-value=23  Score=32.50  Aligned_cols=144  Identities=10%  Similarity=0.127  Sum_probs=74.8

Q ss_pred             CEEEEEe---------CCCcEEEEEccc-----cceee-----eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEE
Q psy6859          59 TLLCTVA---------SDKAMKVFDVIN-----FDMIN-----MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIY  119 (261)
Q Consensus        59 ~~l~s~~---------~dg~v~~wd~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~  119 (261)
                      .||+.|.         ..|.+.++|+-.     +++..     .+-.......+..+..-...++.     +....|.+|
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~-----~~GqKI~v~ 1121 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLS-----SQGQKIIVR 1121 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEE-----ccCcEEEEE
Confidence            3677664         237899999753     32222     22222223333333333334433     467889999


Q ss_pred             EcC-CCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCCC--
Q psy6859         120 DCK-GNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIYQ--  195 (261)
Q Consensus       120 d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~--  195 (261)
                      +++ ....+.. ..-..+..+.++..-.+.    ++.|.--..|.+.-.......+..+. ....-.+.++.|--+|.  
T Consensus      1122 ~l~r~~~ligV-aFiD~~~yv~s~~~vknl----Il~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L 1196 (1366)
T KOG1896|consen 1122 KLDRDSELIGV-AFIDLPLYVHSMKVVKNL----ILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNL 1196 (1366)
T ss_pred             EeccCCcceee-EEeccceeEEehhhhhhh----eehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCee
Confidence            994 4433222 111122233333322222    44555555666666542222222221 12234577888887876  


Q ss_pred             EEEEEcCCCeEEEeecc
Q psy6859         196 VVVSVDKAGILEYWSGY  212 (261)
Q Consensus       196 ~l~~~~~dg~i~iwd~~  212 (261)
                      +++++..|+.|++|-..
T Consensus      1197 ~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1197 SFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred             EEEEEcCCCcEEEEEeC
Confidence            56888899999988654

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=87.18  E-value=13  Score=29.48  Aligned_cols=27  Identities=11%  Similarity=0.067  Sum_probs=16.4

Q ss_pred             eCCCEEEEEeCC-----------CcEEEEEccccceee
Q psy6859          56 YNGTLLCTVASD-----------KAMKVFDVINFDMIN   82 (261)
Q Consensus        56 ~~~~~l~s~~~d-----------g~v~~wd~~~~~~~~   82 (261)
                      -++++.+.|+..           ..+..||..+.+...
T Consensus        83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~  120 (376)
T PRK14131         83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQK  120 (376)
T ss_pred             ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEe
Confidence            456677777653           246778877655433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.84  E-value=15  Score=29.57  Aligned_cols=147  Identities=7%  Similarity=-0.033  Sum_probs=72.0

Q ss_pred             eeEEEEeeCCCEEEEEeCCCcEEEEEcccccee-eeeec-cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-
Q psy6859          49 IHSICTNYNGTLLCTVASDKAMKVFDVINFDMI-NMIKL-DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-  125 (261)
Q Consensus        49 v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-  125 (261)
                      ...+..++++.+++.+..-..++-||  .++.. ..... .......+.+.+++..+++     +..|.+.. ....++ 
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~-----g~~G~l~~-S~d~G~~  312 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLL-----TRGGGLYV-SKGTGLT  312 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEE-----eCCceEEE-ecCCCCc
Confidence            34445567776666554332233344  22221 11111 1222334444455544433     35565443 333332 


Q ss_pred             ----eeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec--cCcccCeEEEEEcCCCCEEEE
Q psy6859         126 ----MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD--RLHTKPVVLIKFNPIYQVVVS  199 (261)
Q Consensus       126 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~  199 (261)
                          .............+..+.+.+++.   ++..+..|.+..-. . .++.-...+  ..-....+.+.|.++++.+++
T Consensus       313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~---~~a~G~~G~v~~s~-D-~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~  387 (398)
T PLN00033        313 EEDFDFEEADIKSRGFGILDVGYRSKKE---AWAAGGSGILLRST-D-GGKSWKRDKGADNIAANLYSVKFFDDKKGFVL  387 (398)
T ss_pred             ccccceeecccCCCCcceEEEEEcCCCc---EEEEECCCcEEEeC-C-CCcceeEccccCCCCcceeEEEEcCCCceEEE
Confidence                122222222233578888888876   44444577666553 2 444433322  123457889999887776666


Q ss_pred             EcCCCeEEEe
Q psy6859         200 VDKAGILEYW  209 (261)
Q Consensus       200 ~~~dg~i~iw  209 (261)
                      | .+|.|.-|
T Consensus       388 G-~~G~il~~  396 (398)
T PLN00033        388 G-NDGVLLRY  396 (398)
T ss_pred             e-CCcEEEEe
Confidence            5 47776544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.83  E-value=8.3  Score=26.72  Aligned_cols=30  Identities=17%  Similarity=0.208  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCC------CEEEEEcCCCeEEEeeccc
Q psy6859         184 PVVLIKFNPIY------QVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       184 ~v~~~~~~~~~------~~l~~~~~dg~i~iwd~~~  213 (261)
                      .+.+++|||.|      -+||+-..++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78899999954      2789999999999998763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=86.76  E-value=1.9  Score=19.35  Aligned_cols=25  Identities=4%  Similarity=-0.064  Sum_probs=16.4

Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859         185 VVLIKFNPIYQVVVSVDKAGILEYW  209 (261)
Q Consensus       185 v~~~~~~~~~~~l~~~~~dg~i~iw  209 (261)
                      ..+++++++|+++++-.....|++|
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4567777777766666666666553

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.69  E-value=5.1  Score=34.46  Aligned_cols=72  Identities=10%  Similarity=0.085  Sum_probs=50.8

Q ss_pred             CCeEEEEEc--C-CCeEEEecCCCeEEEEeccCCceee-eEEeeccccceeEEEEeeCC---C---EEEEEeCCCcEEEE
Q psy6859           4 SPITHVVVT--K-TDFVITASNDGHIKFWKKQEEGIEF-VKHFRSHLGVIHSICTNYNG---T---LLCTVASDKAMKVF   73 (261)
Q Consensus         4 ~~v~~~~~~--~-~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~---~---~l~s~~~dg~v~~w   73 (261)
                      ..+++++++  . .++||++++...|.||-......+. ...-..|...|.+|+|.++.   .   .+++++-.|.+.+|
T Consensus       164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~  243 (717)
T PF08728_consen  164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF  243 (717)
T ss_pred             CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence            468899998  6 6788888888999998765421011 11111256779999997643   2   77888999999998


Q ss_pred             Ec
Q psy6859          74 DV   75 (261)
Q Consensus        74 d~   75 (261)
                      ++
T Consensus       244 ~I  245 (717)
T PF08728_consen  244 KI  245 (717)
T ss_pred             EE
Confidence            88

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=86.65  E-value=14  Score=28.98  Aligned_cols=26  Identities=12%  Similarity=0.059  Sum_probs=16.5

Q ss_pred             eCCCEEEEEeCC-----------CcEEEEEcccccee
Q psy6859          56 YNGTLLCTVASD-----------KAMKVFDVINFDMI   81 (261)
Q Consensus        56 ~~~~~l~s~~~d-----------g~v~~wd~~~~~~~   81 (261)
                      -++++.+.|+.+           ..+..||..+.+..
T Consensus        62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~   98 (346)
T TIGR03547        62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ   98 (346)
T ss_pred             ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence            466777777753           24677887765543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=86.61  E-value=19  Score=31.52  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=24.6

Q ss_pred             cccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859          45 HLGVIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus        45 ~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      -.+.|...+|+.|.+.++....+.+|.+++-
T Consensus       111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k  141 (1243)
T COG5290         111 VSNGIVAASWSADEKTWCVVTSTREILLFDK  141 (1243)
T ss_pred             ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence            3467888999999997777777788888773

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.53  E-value=15  Score=29.24  Aligned_cols=153  Identities=8%  Similarity=0.053  Sum_probs=84.8

Q ss_pred             eCCCEEEEEeCCCcEEEEEccccceeeeeeccC-cceeEE-EEeecCCceeeeeeecCCC--CeEEEEEcCCC-ceeeEE
Q psy6859          56 YNGTLLCTVASDKAMKVFDVINFDMINMIKLDF-TPLTVE-CIHYLGDAIPTAAVSDQDS--SRVHIYDCKGN-DMINMI  130 (261)
Q Consensus        56 ~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~s~~~d--~~i~i~d~~~~-~~~~~~  130 (261)
                      |...+++...+++-+.+||+ .|+.++.+.... ..+.+. .+.-.++.+-.++++--.+  ..|++|.+... ..+..+
T Consensus        66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEET-TS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             cccceEEEEeCCCCEEEEcC-CCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence            45568888889999999998 677777664221 111111 1222344432333332222  57999977532 233333


Q ss_pred             eecC-----CcceEEEEEE--eCC-CCceEEEEecCCCeEEEEEccC--CC----ccceeeccCcccCeEEEEEcCCCCE
Q psy6859         131 KLDF-----TPLTVECIHY--LGD-AIPTAAVSDQDSSHVHIYDCKG--NG----TPLHVLDRLHTKPVVLIKFNPIYQV  196 (261)
Q Consensus       131 ~~~~-----~~~~~~~~~~--~~~-~~~~~~~~~~~d~~i~i~d~~~--~~----~~~~~~~~~~~~~v~~~~~~~~~~~  196 (261)
                      ....     ....+..++.  ++. +.. .++....+|.+..|.+..  .+    +++++|.  -...+..+.......+
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~-ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDDe~g~  221 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGAL-YAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDDETGR  221 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--E-EEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTE
T ss_pred             CCCCcccccccccceeeEEeecCCCCcE-EEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEecccCC
Confidence            2111     1112444444  443 443 355566789998888752  22    4577774  4557899999988889


Q ss_pred             EEEEcCCCeEEEeecc
Q psy6859         197 VVSVDKAGILEYWSGY  212 (261)
Q Consensus       197 l~~~~~dg~i~iwd~~  212 (261)
                      |+.+-++.-|.-|+.+
T Consensus       222 LYvgEE~~GIW~y~Ae  237 (381)
T PF02333_consen  222 LYVGEEDVGIWRYDAE  237 (381)
T ss_dssp             EEEEETTTEEEEEESS
T ss_pred             EEEecCccEEEEEecC
Confidence            9999998877777765

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN02153 epithiospecifier protein

Probab=86.10  E-value=14  Score=28.79  Aligned_cols=69  Identities=4%  Similarity=-0.043  Sum_probs=33.9

Q ss_pred             CCCeEEEecCC-------CeEEEEeccCCceeeeEEeec-cccceeEE-EEeeCCCEEEEEeCC-----CcEEEEEcccc
Q psy6859          13 KTDFVITASND-------GHIKFWKKQEEGIEFVKHFRS-HLGVIHSI-CTNYNGTLLCTVASD-----KAMKVFDVINF   78 (261)
Q Consensus        13 ~~~~l~s~~~d-------~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~-~~~~~~~~l~s~~~d-----g~v~~wd~~~~   78 (261)
                      .+.+++.|+.+       ..+.++|..+........... ........ ...-++++++.|+.+     ..+.+||+.+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~  111 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN  111 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence            35566667653       246777777653333222110 00000111 122255677777653     25778888766


Q ss_pred             cee
Q psy6859          79 DMI   81 (261)
Q Consensus        79 ~~~   81 (261)
                      +..
T Consensus       112 ~W~  114 (341)
T PLN02153        112 EWT  114 (341)
T ss_pred             EEE
Confidence            543

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=86.08  E-value=11  Score=28.00  Aligned_cols=69  Identities=13%  Similarity=0.140  Sum_probs=43.4

Q ss_pred             CCCCeEEEEEcC--------CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEE----EeeCCCEEEEEeCCCc
Q psy6859           2 HRSPITHVVVTK--------TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSIC----TNYNGTLLCTVASDKA   69 (261)
Q Consensus         2 H~~~v~~~~~~~--------~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~s~~~dg~   69 (261)
                      +...|+|++--+        -..|+.|.++|.|.|.|.+..  .....++-..-++ .+.    |..-+-.|+.+++||.
T Consensus       175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af--~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~  251 (257)
T PF14779_consen  175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAF--TILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGK  251 (257)
T ss_pred             cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhh--eeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCE
Confidence            356788887642        147999999999999998765  4444444322222 222    2212235777789998


Q ss_pred             EEEE
Q psy6859          70 MKVF   73 (261)
Q Consensus        70 v~~w   73 (261)
                      |++.
T Consensus       252 iy~i  255 (257)
T PF14779_consen  252 IYTI  255 (257)
T ss_pred             EEEE
Confidence            8764

>PRK10115 protease 2; Provisional

Probab=85.90  E-value=23  Score=30.92  Aligned_cols=118  Identities=6%  Similarity=-0.101  Sum_probs=65.4

Q ss_pred             ceeEEEEeeCCCEEEEEeC-C----CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeec--CCCCeEEEEE
Q psy6859          48 VIHSICTNYNGTLLCTVAS-D----KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD--QDSSRVHIYD  120 (261)
Q Consensus        48 ~v~~~~~~~~~~~l~s~~~-d----g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~d~~i~i~d  120 (261)
                      .+..+.++||+++|+.+.. +    -.+++.|+.+++.+...- .... ....+.++++.++....-.  .....|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4667889999998876543 2    258888998876433221 1111 2356667777665542211  1235788888


Q ss_pred             cCCC--ceeeEEeecCCcceEEEEEEeCCCCceEEEEe-cCCCeEEEEEcc
Q psy6859         121 CKGN--DMINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QDSSHVHIYDCK  168 (261)
Q Consensus       121 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~  168 (261)
                      +.+.  +....+........ .....+.++.+.++.+. ..++.+.+++..
T Consensus       206 lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            8887  33334443222222 23333446665443332 234678888853

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.07  E-value=26  Score=30.74  Aligned_cols=74  Identities=9%  Similarity=0.135  Sum_probs=50.0

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccC---------Ccee-eeEEe--------eccccceeEEEEeeC---CCEEE
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQE---------EGIE-FVKHF--------RSHLGVIHSICTNYN---GTLLC   62 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~---------~~~~-~~~~~--------~~~~~~v~~~~~~~~---~~~l~   62 (261)
                      .|..|.++| |.+++..|..|.+.+.=...         +... ..+++        ..+...|..+.|+|.   +..|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            478889999 99898888866554432211         1001 11111        123457899999985   57888


Q ss_pred             EEeCCCcEEEEEcccc
Q psy6859          63 TVASDKAMKVFDVINF   78 (261)
Q Consensus        63 s~~~dg~v~~wd~~~~   78 (261)
                      .=..|+++|+||+...
T Consensus       166 vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEecCCEEEEEecCCC
Confidence            8899999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.60  E-value=3.3  Score=20.14  Aligned_cols=29  Identities=7%  Similarity=-0.039  Sum_probs=23.8

Q ss_pred             EEEEEeCCCcEEEEEccccceeeeeeccC
Q psy6859          60 LLCTVASDKAMKVFDVINFDMINMIKLDF   88 (261)
Q Consensus        60 ~l~s~~~dg~v~~wd~~~~~~~~~~~~~~   88 (261)
                      .++.++.+|.+.-.|..+|+.+..++...
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~   30 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP   30 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence            45566899999999999999998887543

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=84.54  E-value=6.7  Score=23.56  Aligned_cols=49  Identities=16%  Similarity=0.091  Sum_probs=32.2

Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecc
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGY  212 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~  212 (261)
                      -+.|..||.. .   .+... ..-...+.|.++|++++|+.++ ..+.|++|..+
T Consensus        35 ~~~Vvyyd~~-~---~~~va-~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   35 WGNVVYYDGK-E---VKVVA-SGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CceEEEEeCC-E---eEEee-ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            3556677754 2   22222 2334568899999999886555 67889999863

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=83.44  E-value=7.8  Score=23.46  Aligned_cols=52  Identities=12%  Similarity=0.131  Sum_probs=31.2

Q ss_pred             cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEE
Q psy6859         110 DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIY  165 (261)
Q Consensus       110 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~  165 (261)
                      +..+|.+.-||+.+++....+..-.   ....++.++++..+ +++-+....|.=|
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~---fpNGVals~d~~~v-lv~Et~~~Ri~ry   84 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLY---FPNGVALSPDESFV-LVAETGRYRILRY   84 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEES---SEEEEEE-TTSSEE-EEEEGGGTEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCC---ccCeEEEcCCCCEE-EEEeccCceEEEE
Confidence            4678999999999987655554322   34788999999864 4444444444433

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=83.39  E-value=14  Score=32.72  Aligned_cols=52  Identities=15%  Similarity=0.067  Sum_probs=37.3

Q ss_pred             CeEEEEEccCCCcccee-eccCcccCeEEEEEcCCCCEEEE-EcCCC-----eEEEeecccc
Q psy6859         160 SHVHIYDCKGNGTPLHV-LDRLHTKPVVLIKFNPIYQVVVS-VDKAG-----ILEYWSGYKQ  214 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~-~~~dg-----~i~iwd~~~~  214 (261)
                      +.|.+-|.. ...+... +  .+..+|.+-.|||||+.|+- .+.++     .|.+-++++.
T Consensus       329 ~~L~~~D~d-G~n~~~ve~--~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~  387 (912)
T TIGR02171       329 GNLAYIDYT-KGASRAVEI--EDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS  387 (912)
T ss_pred             CeEEEEecC-CCCceEEEe--cCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence            588888886 4444433 4  57888999999999999876 44443     4788888753

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=82.82  E-value=26  Score=29.03  Aligned_cols=148  Identities=16%  Similarity=0.019  Sum_probs=68.8

Q ss_pred             CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcc---eeEEEEee
Q psy6859          22 NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTP---LTVECIHY   98 (261)
Q Consensus        22 ~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~---~~~~~~~~   98 (261)
                      ......+.|.+.   .....+.........+...++|.+++...  ..++.+|+ .|+.+..+.++...   .+.+..-+
T Consensus       126 ~~~~~~~iD~~G---~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~  199 (477)
T PF05935_consen  126 SSSYTYLIDNNG---DVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELP  199 (477)
T ss_dssp             BEEEEEEEETTS----EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-T
T ss_pred             CCceEEEECCCc---cEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECC
Confidence            344555666543   33333332222222266778888776555  78888897 57777766655532   33444455


Q ss_pred             cCCceeeeee-------e--cCCCCeEEEEEcCCCceeeEEeecC-------------------------CcceEEEEEE
Q psy6859          99 LGDAIPTAAV-------S--DQDSSRVHIYDCKGNDMINMIKLDF-------------------------TPLTVECIHY  144 (261)
Q Consensus        99 ~~~~~~~~~~-------s--~~~d~~i~i~d~~~~~~~~~~~~~~-------------------------~~~~~~~~~~  144 (261)
                      +|+.++.+..       .  ....-.|..+| .+++.+..+....                         .-..+.++.+
T Consensus       200 nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y  278 (477)
T PF05935_consen  200 NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY  278 (477)
T ss_dssp             TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred             CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence            6665554420       0  01123355555 5555554432211                         0125788999


Q ss_pred             eCCCCceEEEEecCCCeEEEEEccCCCccceeec
Q psy6859         145 LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  178 (261)
                      .+... .++++.-....|...|.+ +++....+-
T Consensus       279 d~~dd-~iivSsR~~s~V~~Id~~-t~~i~Wilg  310 (477)
T PF05935_consen  279 DPSDD-SIIVSSRHQSAVIKIDYR-TGKIKWILG  310 (477)
T ss_dssp             ETTTT-EEEEEETTT-EEEEEE-T-TS-EEEEES
T ss_pred             eCCCC-eEEEEcCcceEEEEEECC-CCcEEEEeC
Confidence            88444 346776666688888976 777766663

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PLN02193 nitrile-specifier protein

Probab=81.74  E-value=28  Score=28.73  Aligned_cols=26  Identities=19%  Similarity=0.181  Sum_probs=16.8

Q ss_pred             eCCCEEEEEeCC-----CcEEEEEcccccee
Q psy6859          56 YNGTLLCTVASD-----KAMKVFDVINFDMI   81 (261)
Q Consensus        56 ~~~~~l~s~~~d-----g~v~~wd~~~~~~~   81 (261)
                      -++++++.|+.+     ..+..+|+.+.+..
T Consensus       227 ~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~  257 (470)
T PLN02193        227 IGSTLYVFGGRDASRQYNGFYSFDTTTNEWK  257 (470)
T ss_pred             ECCEEEEECCCCCCCCCccEEEEECCCCEEE
Confidence            355666777654     35778888776543

>KOG1896|consensus

Probab=81.35  E-value=45  Score=30.84  Aligned_cols=147  Identities=16%  Similarity=0.275  Sum_probs=83.6

Q ss_pred             CeEEEec---------CCCeEEEEeccC---Cceee-----eEE-e-eccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859          15 DFVITAS---------NDGHIKFWKKQE---EGIEF-----VKH-F-RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus        15 ~~l~s~~---------~d~~i~iw~~~~---~~~~~-----~~~-~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      .+|+.|.         .-|.+.|+|+-+   ...++     ++. + +.-.++|..++= -+| +|+++ ....|.+|++
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~-~GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSS-QGQKIIVRKL 1123 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEc-cCcEEEEEEe
Confidence            3677663         347899998743   11011     111 1 234567776653 355 55554 3457999999


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      +....+.-...-..+........-.+.++..    .--..|.+.-.+.. ..+..+.-...+-.+.+..|.-++..+-++
T Consensus      1124 ~r~~~ligVaFiD~~~yv~s~~~vknlIl~g----DV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~fl 1199 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKVVKNLILAG----DVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFL 1199 (1366)
T ss_pred             ccCCcceeeEEeccceeEEehhhhhhheehh----hhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEE
Confidence            5443332222222233333333334444443    44455555554433 234444445566678889998888777788


Q ss_pred             EecCCCeEEEEEcc
Q psy6859         155 SDQDSSHVHIYDCK  168 (261)
Q Consensus       155 ~~~~d~~i~i~d~~  168 (261)
                      ++..+++|++|-..
T Consensus      1200 vsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1200 VSDADRNIHVYMYA 1213 (1366)
T ss_pred             EEcCCCcEEEEEeC
Confidence            88999999998765

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=81.21  E-value=29  Score=28.49  Aligned_cols=54  Identities=9%  Similarity=0.144  Sum_probs=34.5

Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc--cceeec----cCcccCeEEEEEcCCC
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT--PLHVLD----RLHTKPVVLIKFNPIY  194 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~----~~~~~~v~~~~~~~~~  194 (261)
                      ....+.|.|++.  ++++--..|.|++++.. .+.  .+..+.    ...+.....|+++|+-
T Consensus        31 ~Pw~maflPDG~--llVtER~~G~I~~v~~~-~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        31 KPWALLWGPDNQ--LWVTERATGKILRVNPE-TGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CceEEEEcCCCe--EEEEEecCCEEEEEeCC-CCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            447899999985  35554436999999764 332  222221    0135678999999985

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=80.88  E-value=3.9  Score=18.34  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=18.8

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859          48 VIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus        48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      .|.+++..+.  +++.+...+.+|+|.
T Consensus         3 ~i~aia~g~~--~vavaTS~~~lRifs   27 (27)
T PF12341_consen    3 EIEAIAAGDS--WVAVATSAGYLRIFS   27 (27)
T ss_pred             eEEEEEccCC--EEEEEeCCCeEEecC
Confidence            4667776554  888888888999873

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>KOG3616|consensus

Probab=80.86  E-value=4.9  Score=34.60  Aligned_cols=82  Identities=12%  Similarity=0.062  Sum_probs=0.0

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ...++++.-+| ++.++.++.||+|++++........+.+..   .+-..+.|...|  |+++..|+.+.-|. ++|...
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvq   87 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQ   87 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeeccc--eEEEeccchhheee-ccCcch


Q ss_pred             eeeeccCcc
Q psy6859          82 NMIKLDFTP   90 (261)
Q Consensus        82 ~~~~~~~~~   90 (261)
                      +.+..+.+.
T Consensus        88 qqfdyndqs   96 (1636)
T KOG3616|consen   88 QQFDYNDQS   96 (1636)
T ss_pred             hhccccchh

>KOG4460|consensus

Probab=80.33  E-value=14  Score=30.51  Aligned_cols=77  Identities=10%  Similarity=0.145  Sum_probs=48.4

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEec---------cCCceeee-EE-------ee-ccccceeEEEEeeCC---CEEE
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKK---------QEEGIEFV-KH-------FR-SHLGVIHSICTNYNG---TLLC   62 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~---------~~~~~~~~-~~-------~~-~~~~~v~~~~~~~~~---~~l~   62 (261)
                      .|..+..++ |..++-.+.+|.+.++=.         +++..... ++       |. ...-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            366777888 888888899988765431         11100011 11       11 111235678899864   5677


Q ss_pred             EEeCCCcEEEEEcccccee
Q psy6859          63 TVASDKAMKVFDVINFDMI   81 (261)
Q Consensus        63 s~~~dg~v~~wd~~~~~~~   81 (261)
                      .-+.|..+|+||+.....+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            7788999999999765544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
3mmy_A	368	Structural And Functional Analysis Of The Interacti		9e-04

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/118 (19%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 15  DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD 74
           +F+I  S    ++ W+ Q+ G    K  + H G +  +C + +G+ + T + DK  K++D
Sbjct: 55  NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114
Query: 75  VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL 132
           + +   I + + D     V+ IH++     +  ++      +  +D + ++ + +++L
Sbjct: 115 LSSNQAIQIAQHD---APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.77
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.7
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.66
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.66
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.64
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.61
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.6
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.55
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.54
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.51
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.51
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.45
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.41
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.41
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.39
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.39
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.36
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.34
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.33
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.31
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.31
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.3
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.29
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.28
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.27
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.27
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.25
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.24
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.23
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.2
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.19
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.19
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.18
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.18
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.17
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.12
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.09
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.07
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.05
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.03
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.99
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.93
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.84
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.83
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.81
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.81
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.76
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.73
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.73
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.7
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.69
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.67
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.63
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.62
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.61
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.59
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.59
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.54
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.53
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.51
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.45
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.42
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.38
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.37
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.36
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.36
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.34
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.28
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.24
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.23
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.22
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.21
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.2
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.2
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.13
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.1
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.08
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.03
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.02
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.0
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.99
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.93
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.91
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.89
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.87
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.8
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.79
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.75
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.73
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.72
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.72
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.68
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.67
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.63
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.57
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.57
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.55
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.54
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.45
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.42
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.37
3ott_A	758	Two-component system sensor histidine kinase; beta	97.22
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.17
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.12
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.12
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.08
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.07
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.02
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.94
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.83
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.82
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	96.78
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.63
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.6
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.27
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.25
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.25
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.23
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.22
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.21
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.89
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.85
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.62
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.61
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.6
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.43
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.25
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.87
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.16
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.07
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.99
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.81
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.74
3ott_A	758	Two-component system sensor histidine kinase; beta	93.37
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.31
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.8
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	92.74
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.48
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.3
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.7
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	89.25
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.34
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	83.49
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	82.56
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	81.76
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	81.24

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-46  Score=287.91  Aligned_cols=238  Identities=14%  Similarity=0.195  Sum_probs=200.8

Q ss_pred             CCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCcee--eeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           2 HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIE--FVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         2 H~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      |...|++++|+|++.|++|+.||+|+|||++++...  ....+.+|.+.|++++|+|++++|++++.|++|++||+.+++
T Consensus        81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~  160 (344)
T 4gqb_B           81 TEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV  160 (344)
T ss_dssp             ESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             cCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence            457899999999778999999999999999876322  223456899999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+..+..+...+..+.+++++..+++   +++.|++|++||+++++....+....+...+.+++|+|++.. ++++|+.|
T Consensus       161 ~~~~~~~h~~~V~~~~~~~~~~~~l~---s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~sg~~d  236 (344)
T 4gqb_B          161 VLSSYRAHAAQVTCVAASPHKDSVFL---SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSE-VFVFGDEN  236 (344)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEE---EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTT-EEEEEETT
T ss_pred             EEEEEcCcCCceEEEEecCCCCCcee---eeccccccccccccccceeeeeecceeeccceeeeecCCCCc-ceEEeccC
Confidence            99999988888888999888765432   248999999999999998888776666667899999997654 37888999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCC-CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY-QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN  238 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (261)
                      +.|++||++ +++++..+. +|...|++++|+|++ ++|++++.|++|+|||+++               ++ +..+.+|
T Consensus       237 g~v~~wd~~-~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~---------------~~-~~~~~~H  298 (344)
T 4gqb_B          237 GTVSLVDTK-STSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL---------------SE-LFRSQAH  298 (344)
T ss_dssp             SEEEEEESC-C--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC---------------CE-EEEECCC
T ss_pred             CcEEEEECC-CCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC---------------Cc-EEEEcCC
Confidence            999999999 899999998 999999999999998 5899999999999999853               33 3456889


Q ss_pred             ccceeeeeECCCCc-eEEEeecCC
Q psy6859         239 KTYPSGLSFSPDGN-KFVTISMDR  261 (261)
Q Consensus       239 ~~~v~~~~~s~~~~-~l~s~~~Dg  261 (261)
                      .+.|++++|+|+++ +|+++|.||
T Consensus       299 ~~~V~~v~~sp~~~~llas~s~D~  322 (344)
T 4gqb_B          299 RDFVRDATWSPLNHSLLTTVGWDH  322 (344)
T ss_dssp             SSCEEEEEECSSSTTEEEEEETTS
T ss_pred             CCCEEEEEEeCCCCeEEEEEcCCC
Confidence            99999999999986 567899986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.2e-45  Score=278.71  Aligned_cols=236  Identities=19%  Similarity=0.263  Sum_probs=212.4

Q ss_pred             CCCCCeEEEEEcC-----CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859           1 MHRSPITHVVVTK-----TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~-----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      ||+++|++++|+|     +.+|++|+.|++|+||++..........+.+|...|.+++|++++.++++++.|++|++||+
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~  109 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL  109 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            6999999999986     35899999999999999987655566788999999999999999999999999999999999


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      .+++.+..+..+......+.++++++.+++.    +.++.|++||+++++....+..  +...+.+++|+|++.+  +++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g----~~dg~v~i~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~--las  181 (321)
T 3ow8_A          110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATG----THVGKVNIFGVESGKKEYSLDT--RGKFILSIAYSPDGKY--LAS  181 (321)
T ss_dssp             TTTEEEEEEECCTTCCCCEEECTTSSEEEEE----CTTSEEEEEETTTCSEEEEEEC--SSSCEEEEEECTTSSE--EEE
T ss_pred             CCCCEEEEEeCCCccEEEEEECCCCCEEEEE----cCCCcEEEEEcCCCceeEEecC--CCceEEEEEECCCCCE--EEE
Confidence            9999998888777777788999999887776    8999999999999988777665  3457899999999986  889


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF  235 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
                      ++.|+.|++||++ +++++..++ +|..+|++++|+|++++|++++.|+.|++||+++               .+.+..+
T Consensus       182 g~~dg~i~iwd~~-~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~---------------~~~~~~~  244 (321)
T 3ow8_A          182 GAIDGIINIFDIA-TGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH---------------ANLAGTL  244 (321)
T ss_dssp             EETTSCEEEEETT-TTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT---------------CCEEEEE
T ss_pred             EcCCCeEEEEECC-CCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC---------------cceeEEE
Confidence            9999999999999 899999998 8999999999999999999999999999999953               5677888


Q ss_pred             CCCccceeeeeECCCCceEEEeecCC
Q psy6859         236 AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       236 ~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+|...|.+++|+|++++|++++.||
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s~D~  270 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSSSDK  270 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCC
Confidence            99999999999999999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-45  Score=279.17  Aligned_cols=234  Identities=15%  Similarity=0.219  Sum_probs=215.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||...|.+++|+| +.++++++.|++|++||+.++  +.+..+..|...+.+++|+|++++|++++.|+.+++|++.+++
T Consensus        78 gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~  155 (321)
T 3ow8_A           78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG--KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK  155 (321)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred             cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC--CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence            7999999999999 889999999999999999987  7888888899999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ....+..+...+..+.++++++.++++    +.|+.|++||+++++.+..+..  +...+.+++|+|++..  +++++.|
T Consensus       156 ~~~~~~~~~~~v~~~~~spdg~~lasg----~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~spd~~~--l~s~s~d  227 (321)
T 3ow8_A          156 KEYSLDTRGKFILSIAYSPDGKYLASG----AIDGIINIFDIATGKLLHTLEG--HAMPIRSLTFSPDSQL--LVTASDD  227 (321)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTTEEEEEECC--CSSCCCEEEECTTSCE--EEEECTT
T ss_pred             eeEEecCCCceEEEEEECCCCCEEEEE----cCCCeEEEEECCCCcEEEEEcc--cCCceeEEEEcCCCCE--EEEEcCC
Confidence            888888777788889999999887776    8999999999999988887765  4457899999999975  8999999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      +.|++||++ .++.+..+. +|...|.+++|+|++++|++++.|+.|++||++               +++++..+.+|.
T Consensus       228 g~i~iwd~~-~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~---------------~~~~~~~~~~h~  290 (321)
T 3ow8_A          228 GYIKIYDVQ-HANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG---------------TRTCVHTFFDHQ  290 (321)
T ss_dssp             SCEEEEETT-TCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---------------TTEEEEEECCCS
T ss_pred             CeEEEEECC-CcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC---------------CCEEEEEEcCCC
Confidence            999999999 888888887 999999999999999999999999999999994               467888899999


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..|.+++|+|++++|++++.||
T Consensus       291 ~~v~~v~~s~~g~~l~s~~~d~  312 (321)
T 3ow8_A          291 DQVWGVKYNGNGSKIVSVGDDQ  312 (321)
T ss_dssp             SCEEEEEECTTSSEEEEEETTC
T ss_pred             CcEEEEEECCCCCEEEEEeCCC
Confidence            9999999999999999999986

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.4e-45  Score=276.72  Aligned_cols=236  Identities=11%  Similarity=0.125  Sum_probs=208.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.+.|++++|+| +++|++|+.||+|++||+.++  ..+..+..|..+|.+++|+|++++|++++.|++|++||+.+++
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~   88 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE   88 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            6999999999999 999999999999999999987  7888999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce-eeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM-INMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      .+..+..+...+..+.+++++..++++    +.|++|++||++++.. ...+..  +...+.+++|+|+... .+++|+.
T Consensus        89 ~~~~~~~h~~~v~~~~~~~~~~~l~sg----s~D~~v~lWd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~-~l~sgs~  161 (304)
T 2ynn_A           89 KVVDFEAHPDYIRSIAVHPTKPYVLSG----SDDLTVKLWNWENNWALEQTFEG--HEHFVMCVAFNPKDPS-TFASGCL  161 (304)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEE----ETTSCEEEEEGGGTTEEEEEECC--CCSCEEEEEECTTCTT-EEEEEET
T ss_pred             EEEEEeCCCCcEEEEEEcCCCCEEEEE----CCCCeEEEEECCCCcchhhhhcc--cCCcEEEEEECCCCCC-EEEEEeC
Confidence            999999888889999999998877666    8999999999987743 344443  5568999999995332 3889999


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcC--CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP--IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      |+.|++||++ ...+...+...|...+..+.|+|  ++++|++++.|+.|++||++               +++++..+.
T Consensus       162 D~~v~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~---------------~~~~~~~~~  225 (304)
T 2ynn_A          162 DRTVKVWSLG-QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ---------------TKSCVATLE  225 (304)
T ss_dssp             TSEEEEEETT-CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT---------------TTEEEEEEE
T ss_pred             CCeEEEEECC-CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC---------------CCccceeeC
Confidence            9999999998 66666665436678899999987  67899999999999999995               467888999


Q ss_pred             CCccceeeeeECCCCceEEEeecCC
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +|...|.+++|+|++++|++|+.||
T Consensus       226 ~h~~~v~~~~~~p~~~~l~s~s~Dg  250 (304)
T 2ynn_A          226 GHMSNVSFAVFHPTLPIIISGSEDG  250 (304)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             CCCCCEEEEEECCCCCEEEEEcCCC
Confidence            9999999999999999999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-45  Score=288.68  Aligned_cols=234  Identities=19%  Similarity=0.309  Sum_probs=215.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.++|++++|+| +.+|++|+.||+|++||+.++  +....+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++
T Consensus       106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~  183 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE  183 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            7999999999999 899999999999999999987  7788999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+..+..+...+..+.+.++++.++++    +.|++|++||++++.++..+..  +...+.++.++|++..  +++++.|
T Consensus       184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~----s~D~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~g~~--l~s~s~D  255 (410)
T 1vyh_C          184 CIRTMHGHDHNVSSVSIMPNGDHIVSA----SRDKTIKMWEVQTGYCVKTFTG--HREWVRMVRPNQDGTL--IASCSND  255 (410)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEE----ETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSSE--EEEEETT
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCEEEEE----eCCCeEEEEECCCCcEEEEEeC--CCccEEEEEECCCCCE--EEEEcCC
Confidence            999988888889999999998877766    8999999999999998888775  4457899999999975  8899999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCC--------------------CCEEEEEcCCCeEEEeecccccccCC
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPI--------------------YQVVVSVDKAGILEYWSGYKQEFKFP  219 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~~~  219 (261)
                      +.|++||++ +++....+. .|...|.+++|+|+                    +.+|++|+.|+.|++||++       
T Consensus       256 ~~v~vwd~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~-------  326 (410)
T 1vyh_C          256 QTVRVWVVA-TKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-------  326 (410)
T ss_dssp             SCEEEEETT-TCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT-------
T ss_pred             CeEEEEECC-CCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC-------
Confidence            999999999 888888887 89999999999996                    6689999999999999995       


Q ss_pred             eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         220 KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                              +++++..+.+|...|++++|+|+|++|++|+.||
T Consensus       327 --------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~  360 (410)
T 1vyh_C          327 --------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK  360 (410)
T ss_dssp             --------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred             --------CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence                    4677888899999999999999999999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-45  Score=288.37  Aligned_cols=236  Identities=17%  Similarity=0.231  Sum_probs=214.3

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.+.|++++|+| +++|++|+.|++|++||+.+.  +.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++
T Consensus       148 ~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~  225 (410)
T 1vyh_C          148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY  225 (410)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            7999999999999 899999999999999999876  7888899999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC----------
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI----------  149 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  149 (261)
                      .+..+..+...+..+.+++++..++++    +.|+.|++||+++++....+..  +...+.+++|+|+..          
T Consensus       226 ~~~~~~~h~~~v~~~~~~~~g~~l~s~----s~D~~v~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~  299 (410)
T 1vyh_C          226 CVKTFTGHREWVRMVRPNQDGTLIASC----SNDQTVRVWVVATKECKAELRE--HRHVVECISWAPESSYSSISEATGS  299 (410)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred             EEEEEeCCCccEEEEEECCCCCEEEEE----cCCCeEEEEECCCCceeeEecC--CCceEEEEEEcCcccccchhhhccc
Confidence            999998888888888888888877666    8999999999999988877765  455789999998632          


Q ss_pred             --------ceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCee
Q psy6859         150 --------PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKC  221 (261)
Q Consensus       150 --------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  221 (261)
                              ..++++|+.|+.|++||++ +++++..+. +|...|++++|+|++++|++++.|+.|++||+.         
T Consensus       300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~-~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~---------  368 (410)
T 1vyh_C          300 ETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK---------  368 (410)
T ss_dssp             C-------CCEEEEEETTSEEEEEETT-TTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCT---------
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECC-CCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC---------
Confidence                    1248899999999999999 889999998 999999999999999999999999999999984         


Q ss_pred             eeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         222 VHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                            .++++..+.+|...|++++|+|++++|++||.||
T Consensus       369 ------~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~  402 (410)
T 1vyh_C          369 ------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ  402 (410)
T ss_dssp             ------TSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS
T ss_pred             ------CCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence                  3677888899999999999999999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.9e-44  Score=272.79  Aligned_cols=248  Identities=13%  Similarity=0.120  Sum_probs=211.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.++|++++|+| +++|++|+.||+|++||..+.  +....+..|...|.+++|+|++++|++++.|+.+++|++.+.+
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~  130 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence            7999999999999 899999999999999999887  6778888999999999999999999999999999999997653


Q ss_pred             ----eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          80 ----MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        80 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                          ....+..+...+..+.+.+++. +++.    +.|+.|++||+++++.+..+..  +...+.+++|+|++..  +++
T Consensus       131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~----s~d~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~--l~s  201 (340)
T 1got_B          131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS----SGDTTCALWDIETGQQTTTFTG--HTGDVMSLSLAPDTRL--FVS  201 (340)
T ss_dssp             BSCEEEEEEECCSSCEEEEEEEETTE-EEEE----ETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSE--EEE
T ss_pred             CcceeEEEecCCCccEEEEEECCCCc-EEEE----ECCCcEEEEECCCCcEEEEEcC--CCCceEEEEECCCCCE--EEE
Confidence                4445556666677777766653 4444    8999999999999988877765  4557999999999875  889


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc----CC------------
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK----FP------------  219 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~------------  219 (261)
                      |+.|+.|++||++ +++++..+. +|...|++++|+|++++|++++.||.|++||++++...    .+            
T Consensus       202 g~~d~~v~~wd~~-~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  279 (340)
T 1got_B          202 GACDASAKLWDVR-EGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             EETTSCEEEEETT-TCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EeCCCcEEEEECC-CCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence            9999999999999 888889997 99999999999999999999999999999999764311    00            


Q ss_pred             -------------eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         220 -------------KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       220 -------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                   ....|+....+.+..+.+|...|.+++|+|+|++|++||.||
T Consensus       280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             CCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence                         112345566777788889999999999999999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.1e-44  Score=269.12  Aligned_cols=243  Identities=17%  Similarity=0.178  Sum_probs=195.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      ||++.|++++|+| +++|++|+.|++|+||++.....+++..+.+|.++|.+++|++  ++++|++++.|++|++||+.+
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~   86 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN   86 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred             CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence            7999999999999 9999999999999999997644467788999999999999986  488999999999999999987


Q ss_pred             cc--eeeeeeccCcceeEEEEeec--CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC----
Q psy6859          78 FD--MINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI----  149 (261)
Q Consensus        78 ~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  149 (261)
                      ++  .+..+..+...+..+.+.++  +..++++    +.|+.|++||+++...........+...+.+++|+|+..    
T Consensus        87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~----s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVA----SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE----ETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             CceEEEEEeecCCCceeEEEeCcCCCCcEEEEE----ECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            74  44455556677888888886  5566555    899999999998764322223334566899999999731    


Q ss_pred             -------ceEEEEecCCCeEEEEEccCCCc----cceeeccCcccCeEEEEEcCCC---CEEEEEcCCCeEEEeeccccc
Q psy6859         150 -------PTAAVSDQDSSHVHIYDCKGNGT----PLHVLDRLHTKPVVLIKFNPIY---QVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       150 -------~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~  215 (261)
                             ...+++|+.|+.|++||++ .++    +...+. +|...|.+++|+|++   ++|++++.|++|++||++...
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~-~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYN-SDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEE-TTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEc-CCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence                   1248999999999999998 554    556776 899999999999985   799999999999999986421


Q ss_pred             ccCCeeeeeecccccceeec--CCCccceeeeeECCCCceEEEeecCC
Q psy6859         216 FKFPKCVHFESKLDTDLFEF--AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .            ......+  ..|...|.+++|+|+|++||+++.||
T Consensus       241 ~------------~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~  276 (297)
T 2pm7_B          241 G------------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  276 (297)
T ss_dssp             S------------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred             C------------ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence            0            0011122  46788999999999999999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1e-44  Score=278.94  Aligned_cols=238  Identities=13%  Similarity=0.223  Sum_probs=199.5

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeee--EEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFV--KHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      +|...|++++|+|+..+++++.||+|+|||+.++.....  ....+|.+.|++++|+|++++|++++.|+.|++||+.++
T Consensus        92 ~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~  171 (357)
T 4g56_B           92 QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK  171 (357)
T ss_dssp             ECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred             CCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            478899999999955677889999999999987532222  234579999999999999999999999999999999999


Q ss_pred             ceeeeeeccCcceeEEEEeecCCc-eeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDA-IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      +.+..+..+...+..+.+++++.. +++.    +.|+.|++||+++++....+....+...+.+++|+|++.. ++++|+
T Consensus       172 ~~~~~~~~h~~~v~~v~~s~~~~~~~~s~----~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~-~la~g~  246 (357)
T 4g56_B          172 AVLKSYNAHSSEVNCVAACPGKDTIFLSC----GEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD-TFACGD  246 (357)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCSSCEEEE----ETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT-EEEEEE
T ss_pred             cEEEEEcCCCCCEEEEEEccCCCceeeee----ccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc-eEEEee
Confidence            999999888888888888887754 3444    8999999999999988887777667778999999998654 377888


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC-CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY-QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      .|+.|++||++ +++++..+. .|...|++++|+|++ ++|++++.|+.|+|||+++               ++.+.. .
T Consensus       247 ~d~~i~~wd~~-~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~---------------~~~~~~-~  308 (357)
T 4g56_B          247 ETGNVSLVNIK-NPDSAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF---------------SEVFRD-L  308 (357)
T ss_dssp             SSSCEEEEESS-CGGGCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS---------------CEEEEE-C
T ss_pred             cccceeEEECC-CCcEeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC---------------CcEeEE-C
Confidence            99999999999 889999998 999999999999987 5899999999999999854               444443 4


Q ss_pred             CCccceeeeeECC-CCceEEEeecCC
Q psy6859         237 KNKTYPSGLSFSP-DGNKFVTISMDR  261 (261)
Q Consensus       237 ~~~~~v~~~~~s~-~~~~l~s~~~Dg  261 (261)
                      +|...|++++|+| ++++|+++|.||
T Consensus       309 ~H~~~V~~vafsP~d~~~l~s~s~Dg  334 (357)
T 4g56_B          309 SHRDFVTGVAWSPLDHSKFTTVGWDH  334 (357)
T ss_dssp             CCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEcCCC
Confidence            7999999999999 899999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.8e-43  Score=271.70  Aligned_cols=251  Identities=13%  Similarity=0.149  Sum_probs=212.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-   78 (261)
                      ||.++|++++|+| +++|++|+.||+|++||..+.  +....+..|...|.+++|+|+++++++++.|+.+++|++... 
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~  139 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK  139 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence            7999999999999 899999999999999999876  666778889999999999999999999999999999998643 


Q ss_pred             -----ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859          79 -----DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        79 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
                           .....+..+...+..+.+.+++..++++    +.|++|++||+++++.+..+..+  ...+.+++++|+.....+
T Consensus       140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~----s~D~~v~lwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTA----SGDGTCALWDVESGQLLQSFHGH--GADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEE----ETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECCCSSCCEE
T ss_pred             cccccccceeeeccCCcEEEEEEeCCCCEEEEE----eCCCcEEEEeCCCCeEEEEEcCC--CCCeEEEEEEeCCCCCEE
Confidence                 2344555677778888888888877766    89999999999999988888764  446788888775322248


Q ss_pred             EEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc----C-----C-----
Q psy6859         154 VSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK----F-----P-----  219 (261)
Q Consensus       154 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~-----~-----  219 (261)
                      ++|+.|+.|++||++ +++++..+. .|...|++++|+|++++|++++.|+.|++||++.....    .     +     
T Consensus       214 ~sgs~Dg~v~~wd~~-~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~  291 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMR-SGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD  291 (354)
T ss_dssp             EEEETTSCEEEEETT-TCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             EEEeCCCeEEEEECC-CCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence            999999999999999 889999997 99999999999999999999999999999998754210    0     0     


Q ss_pred             ---------------eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         220 ---------------KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       220 ---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                     ....|+..+++.+..+.+|...|++++|+|+|++|++|+.||
T Consensus       292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence                           112345556777788889999999999999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.8e-43  Score=266.52  Aligned_cols=237  Identities=14%  Similarity=0.168  Sum_probs=204.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-   78 (261)
                      +|..+|.+++|+| +++|++|+.|++|++||+.++  +.+..+.+|.+.|.+++|+|++++|++++.|++|++||+.++ 
T Consensus        53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~  130 (304)
T 2ynn_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW  130 (304)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT
T ss_pred             ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC--cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc
Confidence            5889999999999 899999999999999999987  788889999999999999999999999999999999999887 


Q ss_pred             ceeeeeeccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          79 DMINMIKLDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      .....+..+...+..+.++|. +..++++    +.|++|++||+++......+... +...+..+.+.|.....++++++
T Consensus       131 ~~~~~~~~h~~~v~~v~~~p~~~~~l~sg----s~D~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s  205 (304)
T 2ynn_A          131 ALEQTFEGHEHFVMCVAFNPKDPSTFASG----CLDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITAS  205 (304)
T ss_dssp             EEEEEECCCCSCEEEEEECTTCTTEEEEE----ETTSEEEEEETTCSSCSEEEECC-CTTCEEEEEECCSTTCCEEEEEE
T ss_pred             chhhhhcccCCcEEEEEECCCCCCEEEEE----eCCCeEEEEECCCCCccceeccC-CcCcEEEEEEEEcCCCCEEEEEc
Confidence            445566777777888888874 4555555    89999999999888766665533 33467788887643223489999


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      .|+.|++||++ +++++..+. +|...|.+++|+|++++|++++.||.|++||+.               +.+.+..+..
T Consensus       206 ~D~~i~iWd~~-~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~---------------~~~~~~~~~~  268 (304)
T 2ynn_A          206 DDLTIKIWDYQ-TKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---------------TYKVEKTLNV  268 (304)
T ss_dssp             TTSEEEEEETT-TTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---------------TCCEEEEECC
T ss_pred             CCCeEEEEeCC-CCccceeeC-CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC---------------CCceeeeccC
Confidence            99999999999 889999998 999999999999999999999999999999984               4678888899


Q ss_pred             CccceeeeeECCCCc--eEEEeecCC
Q psy6859         238 NKTYPSGLSFSPDGN--KFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~--~l~s~~~Dg  261 (261)
                      |...+++++|+|++.  +|++|+.||
T Consensus       269 ~~~~~~~~~~~~~~~~~~~asg~~~g  294 (304)
T 2ynn_A          269 GLERSWCIATHPTGRKNYIASGFDNG  294 (304)
T ss_dssp             SSSSEEEEEECTTCGGGCEEEEETTE
T ss_pred             CCccEEEEEECCCCCceEEEEecCCc
Confidence            999999999999875  688888775

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.5e-42  Score=261.25  Aligned_cols=248  Identities=18%  Similarity=0.249  Sum_probs=216.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.++|++++|+| +++|++|+.||.|++|+..+.  +....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~   98 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK   98 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence            7999999999999 899999999999999999877  6778889999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+..+..+...+..+.+.++++.++++    +.|+.|++||+++++.+..+..  +...+.++.|+|++..  +++++.|
T Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~--l~~~~~d  170 (312)
T 4ery_A           99 CLKTLKGHSNYVFCCNFNPQSNLIVSG----SFDESVRIWDVKTGKCLKTLPA--HSDPVSAVHFNRDGSL--IVSSSYD  170 (312)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEE----ETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSE--EEEEETT
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEE----eCCCcEEEEECCCCEEEEEecC--CCCcEEEEEEcCCCCE--EEEEeCC
Confidence            999988888888888999988877766    8999999999999988877765  4457899999999875  8899999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC---------------------
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF---------------------  218 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------  218 (261)
                      +.|++||++ +++.+..+...+..++..++|+|++++|++++.|+.|++||+++++...                     
T Consensus       171 ~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          171 GLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             SCEEEEETT-TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred             CcEEEEECC-CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence            999999999 7777776643567789999999999999999999999999997643110                     


Q ss_pred             ---------CeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         219 ---------PKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       219 ---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                               .....|+..+++.+..+.+|...|.+++|+|++++|++++.
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~  299 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL  299 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEEC
T ss_pred             cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEc
Confidence                     01133566777888899999999999999999999999873

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.1e-42  Score=262.81  Aligned_cols=254  Identities=13%  Similarity=0.128  Sum_probs=203.6

Q ss_pred             CCCCCeEEEEE-----cC--CCeEEEecCCCeEEEEeccCCc-----eeeeEEeeccccceeEEEEeeCCCEEEEEeCCC
Q psy6859           1 MHRSPITHVVV-----TK--TDFVITASNDGHIKFWKKQEEG-----IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK   68 (261)
Q Consensus         1 gH~~~v~~~~~-----~~--~~~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg   68 (261)
                      ||++.|++++|     ++  +++|++|+.|++|++|++....     ..+...+.+|...|.+++|+|+++++++++.|+
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~   98 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK   98 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence            79999999999     65  6799999999999999987532     245678899999999999999999999999999


Q ss_pred             cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCC
Q psy6859          69 AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDA  148 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (261)
                      +|++||+.+++.+..+..+..++..+.++++++.++++    +.|+.|++||+.............+...+.++.|+|++
T Consensus        99 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~----~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (343)
T 2xzm_R           99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA----GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM  174 (343)
T ss_dssp             EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEE----ETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC
T ss_pred             cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEE----cCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc
Confidence            99999999999999998888889999999999887776    89999999999854333322223456679999999986


Q ss_pred             Cc--------eEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC--
Q psy6859         149 IP--------TAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF--  218 (261)
Q Consensus       149 ~~--------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--  218 (261)
                      ..        .++++++.|+.|++||.  ..+....+. .|...|++++|+|++++|++++.||.|++||+.......  
T Consensus       175 ~~~~~~~~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~  251 (343)
T 2xzm_R          175 KSANKVQPFAPYFASVGWDGRLKVWNT--NFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE  251 (343)
T ss_dssp             CSCSCCCSSCCEEEEEETTSEEEEEET--TTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE
T ss_pred             ccccccCCCCCEEEEEcCCCEEEEEcC--CCceeEEEc-CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee
Confidence            21        24889999999999995  556777787 899999999999999999999999999999984322110  


Q ss_pred             ---C---ee------------------eeeeccccccee--ecC-----------CCccceeeeeECCCCceEEEeecCC
Q psy6859         219 ---P---KC------------------VHFESKLDTDLF--EFA-----------KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       219 ---~---~~------------------~~~~~~~~~~~~--~~~-----------~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                         .   ..                  ..++..+.+...  .+.           +|...|.+++|+|+|++|++|+.||
T Consensus       252 ~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg  331 (343)
T 2xzm_R          252 FDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG  331 (343)
T ss_dssp             EECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS
T ss_pred             ecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc
Confidence               0   00                  112222222211  222           6788899999999999999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2e-42  Score=262.41  Aligned_cols=235  Identities=14%  Similarity=0.195  Sum_probs=201.7

Q ss_pred             CCCCCeEEEEEcC-C-CeEEEecCCCeEEEEeccCCc---eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859           1 MHRSPITHVVVTK-T-DFVITASNDGHIKFWKKQEEG---IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      ||+++|++++|+| + ++|++|+.|++|++|++....   ..++..+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~   94 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV   94 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            7999999999998 4 799999999999999986522   2457788999999999999999999999999999999999


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC----ce
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI----PT  151 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  151 (261)
                      .+++.+..+..+..++..+.+.+++..++++    +.|++|++||++.. .+..+..  +...+.++.+.|...    ..
T Consensus        95 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----s~D~~i~vwd~~~~-~~~~~~~--h~~~v~~~~~~~~~~~~~~~~  167 (319)
T 3frx_A           95 ATGETYQRFVGHKSDVMSVDIDKKASMIISG----SRDKTIKVWTIKGQ-CLATLLG--HNDWVSQVRVVPNEKADDDSV  167 (319)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSCEEEEE----ETTSCEEEEETTSC-EEEEECC--CSSCEEEEEECCC------CC
T ss_pred             CCCCeeEEEccCCCcEEEEEEcCCCCEEEEE----eCCCeEEEEECCCC-eEEEEec--cCCcEEEEEEccCCCCCCCcc
Confidence            9999999998888888889999888877766    89999999999754 4444443  455788999988542    12


Q ss_pred             EEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccc
Q psy6859         152 AAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTD  231 (261)
Q Consensus       152 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  231 (261)
                      .+++++.|+.|++||++ ..+....+. +|...|++++|+|++++|++++.||.|++||+.+               .+.
T Consensus       168 ~l~s~~~d~~i~~wd~~-~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~---------------~~~  230 (319)
T 3frx_A          168 TIISAGNDKMVKAWNLN-QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA---------------KKA  230 (319)
T ss_dssp             EEEEEETTSCEEEEETT-TTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT---------------TEE
T ss_pred             EEEEEeCCCEEEEEECC-cchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------------CcE
Confidence            48899999999999998 888888887 9999999999999999999999999999999954               556


Q ss_pred             eeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         232 LFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       232 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      +..+.. ...|.+++|+|++.+|++++.+
T Consensus       231 ~~~~~~-~~~v~~~~~sp~~~~la~~~~~  258 (319)
T 3frx_A          231 MYTLSA-QDEVFSLAFSPNRYWLAAATAT  258 (319)
T ss_dssp             EEEEEC-CSCEEEEEECSSSSEEEEEETT
T ss_pred             EEEecC-CCcEEEEEEcCCCCEEEEEcCC
Confidence            666664 4689999999999999988765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.1e-43  Score=271.80  Aligned_cols=252  Identities=15%  Similarity=0.158  Sum_probs=203.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||+++|++++|+| +++|++|+.|++|+|||..+.  +....+..|...|.+++|+|++++|++++.|+.+++||+.+..
T Consensus        64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~  141 (380)
T 3iz6_a           64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA  141 (380)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred             ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence            7999999999999 899999999999999999887  7888899999999999999999999999999999999986532


Q ss_pred             -------eeeeeeccCcceeEEEEeecCC-ceeeeeeecCCCCeEEEEEcCCCceeeEEee---cCCcceEEEEEEeC-C
Q psy6859          80 -------MINMIKLDFTPLTVECIHYLGD-AIPTAAVSDQDSSRVHIYDCKGNDMINMIKL---DFTPLTVECIHYLG-D  147 (261)
Q Consensus        80 -------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~-~  147 (261)
                             ....+..+...+..+.+.+++. .++++    +.|++|++||+++++.+..+..   ..+...+.++.+++ +
T Consensus       142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~----s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  217 (380)
T 3iz6_a          142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG----SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN  217 (380)
T ss_dssp             SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE----CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred             cccCCccceeeccCCCcceEEEEEecCCCCEEEEE----CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence                   2233444444555555555433 35444    9999999999999988777632   23456789999987 4


Q ss_pred             CCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc----C-----
Q psy6859         148 AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK----F-----  218 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~-----  218 (261)
                      +.  ++++|+.|+.|++||++...+++..+. +|...|++++|+|++++|++++.|+.|++||++++...    .     
T Consensus       218 ~~--~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          218 AN--MFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             CC--EEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             CC--EEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            54  388999999999999984557888887 99999999999999999999999999999999764210    0     


Q ss_pred             -------------C------------eeeeeecccccceeec----CCCccceeeeeECCCCceEEEeecCC
Q psy6859         219 -------------P------------KCVHFESKLDTDLFEF----AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       219 -------------~------------~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                   +            ....|+...++.+..+    .+|...|++++|+|+|++|++||.||
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~  366 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK  366 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC
Confidence                         0            0122444445555544    57999999999999999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.1e-42  Score=263.44  Aligned_cols=253  Identities=11%  Similarity=0.130  Sum_probs=201.1

Q ss_pred             CCCC-CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeE-EeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRS-PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVK-HFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~-~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      ||.+ .|++++|+| +++||+|+.|++|+||++.+....... ...+|...|.+++|+|++++|++++.|+++++||+..
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~   92 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ   92 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence            6887 999999999 999999999999999999876322222 2368999999999999999999999999999999887


Q ss_pred             cc--eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE-eecCCcceEEEEEEeCCCCceEEE
Q psy6859          78 FD--MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI-KLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        78 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      +.  .+..+..+..++..+.++++++.++++    +.|+.|++||++++.....+ ....+...+.+++|+|++..  ++
T Consensus        93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~----s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~--l~  166 (345)
T 3fm0_A           93 DDFECVTTLEGHENEVKSVAWAPSGNLLATC----SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL--LA  166 (345)
T ss_dssp             C-EEEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC--EE
T ss_pred             CCeEEEEEccCCCCCceEEEEeCCCCEEEEE----ECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE--EE
Confidence            64  566777777888899999999877776    89999999999876543222 23345668999999999986  88


Q ss_pred             EecCCCeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce
Q psy6859         155 SDQDSSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL  232 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  232 (261)
                      +++.|+.|++||.+ .+.  +...+. +|...|++++|+|++++|++++.|+.|++||...................+++
T Consensus       167 s~s~d~~i~~w~~~-~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~  244 (345)
T 3fm0_A          167 SASYDDTVKLYREE-EDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI  244 (345)
T ss_dssp             EEETTSCEEEEEEE-TTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred             EEeCCCcEEEEEec-CCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence            99999999999998 554  456776 89999999999999999999999999999997432111100000001122344


Q ss_pred             eecCC-CccceeeeeECCCCceEEEeecCC
Q psy6859         233 FEFAK-NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       233 ~~~~~-~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..+.+ |...|.+++|+|++..|++++.|+
T Consensus       245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~  274 (345)
T 3fm0_A          245 CTLSGFHSRTIYDIAWCQLTGALATACGDD  274 (345)
T ss_dssp             EEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred             EEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence            55555 889999999999999999999885

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.8e-43  Score=266.08  Aligned_cols=244  Identities=12%  Similarity=0.137  Sum_probs=192.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      ||+++|++++|+| +++|++|+.|++|+|||+.++....+..+.+|.++|.+++|++  ++++|++++.|++|++||+.+
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~   90 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN   90 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence            7999999999999 9999999999999999998764456788999999999999985  488999999999999999988


Q ss_pred             cc--eeeeeeccCcceeEEEEeec--CCceeeeeeecCCCCeEEEEEcCCCceee-EEeecCCcceEEEEEEeCCCC---
Q psy6859          78 FD--MINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQDSSRVHIYDCKGNDMIN-MIKLDFTPLTVECIHYLGDAI---  149 (261)
Q Consensus        78 ~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---  149 (261)
                      ++  ....+..+...+..+.++++  +..++++    +.|+.|++||++...... ......+...+.++.|+|+..   
T Consensus        91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasg----s~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG----SSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEE----CSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             CcceEEEEccCCCCceEEEEECCCCCCcEEEEE----cCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            74  44555566677888888887  5555555    999999999998763221 112233455778899988731   


Q ss_pred             ------------ceEEEEecCCCeEEEEEccCCC---ccceeeccCcccCeEEEEEcCCC----CEEEEEcCCCeEEEee
Q psy6859         150 ------------PTAAVSDQDSSHVHIYDCKGNG---TPLHVLDRLHTKPVVLIKFNPIY----QVVVSVDKAGILEYWS  210 (261)
Q Consensus       150 ------------~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd  210 (261)
                                  ...+++|+.|+.|++||++ ..   +++..+. +|...|.+++|+|++    ++|++++.|++|++|+
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~-~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEE-EDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEEC-TTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeC-CCCccceeeecc-cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                        0238999999999999997 44   4567777 899999999999987    7899999999999999


Q ss_pred             cccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         211 GYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +++...           .......+..|...|++++|+|++++||+++.||
T Consensus       245 ~~~~~~-----------~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          245 CDDASS-----------NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             CSSTTC-----------CCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred             ccCccc-----------cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            864100           0111233456889999999999999999999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.3e-42  Score=261.47  Aligned_cols=249  Identities=16%  Similarity=0.209  Sum_probs=201.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||...|++++|+| +++|++|+.|+++++|+......+.+..+.+|...|.+++|+|++++|++++.|++|++||+.++.
T Consensus        59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~  138 (345)
T 3fm0_A           59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED  138 (345)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred             ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC
Confidence            6999999999999 999999999999999999876556788899999999999999999999999999999999998764


Q ss_pred             ---eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859          80 ---MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus        80 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                         .+..+..+...+..+.+++++..++++    +.|+.|++||+++++.........+...|.+++|+|++.+  ++++
T Consensus       139 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~----s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~--l~s~  212 (345)
T 3fm0_A          139 EYECVSVLNSHTQDVKHVVWHPSQELLASA----SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR--LASC  212 (345)
T ss_dssp             CEEEEEEECCCCSCEEEEEECSSSSCEEEE----ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE--EEEE
T ss_pred             CeEEEEEecCcCCCeEEEEECCCCCEEEEE----eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE--EEEE
Confidence               344555666778888899998877766    8999999999988765544444556678999999999976  8899


Q ss_pred             cCCCeEEEEEccCCC--------------ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeee
Q psy6859         157 QDSSHVHIYDCKGNG--------------TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCV  222 (261)
Q Consensus       157 ~~d~~i~i~d~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  222 (261)
                      +.|++|++||....+              +++..+...|...|.+++|+|++..|++++.|+.|++|+........... 
T Consensus       213 s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-  291 (345)
T 3fm0_A          213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT-  291 (345)
T ss_dssp             ETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC-
T ss_pred             eCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee-
Confidence            999999999975221              12233432388899999999999999999999999999986432100000 


Q ss_pred             eeecccccceeecCCCccceeeeeECCCC-ceEEEeecCC
Q psy6859         223 HFESKLDTDLFEFAKNKTYPSGLSFSPDG-NKFVTISMDR  261 (261)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~Dg  261 (261)
                           .........+|...|++++|+|++ .+||+||.||
T Consensus       292 -----~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg  326 (345)
T 3fm0_A          292 -----FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG  326 (345)
T ss_dssp             -----EEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             -----EEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence                 001123346899999999999998 4999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.9e-41  Score=258.04  Aligned_cols=254  Identities=14%  Similarity=0.151  Sum_probs=208.1

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCc---eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEG---IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      ||+++|++|+|+|  +++|+||+.|++|+|||+....   ..+...+++|...|.+++|+|++++|++++.|+.|++|+.
T Consensus        36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~  115 (340)
T 4aow_A           36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL  115 (340)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence            8999999999998  4799999999999999987642   2456788999999999999999999999999999999999


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      ....................+.+.+..++++    +.|+.+++||+...... ......+...+..++|+++....++++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~----s~d~~~~~~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG----SRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSCEEEE----ETTSCEEEECTTSCEEE-EECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             cccceeeeecCCCCceeEEEEeecCccceee----cCCCeEEEEEeCCCceE-EEEeccccCcccceEEccCCCCcEEEE
Confidence            9888887777777777777888888777666    89999999998876433 333344566888999998877677899


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC----C------------
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF----P------------  219 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~------------  219 (261)
                      ++.|+.|++||++ +++++..+. +|..+|++++|+|++++|++++.|+.|++||+++.....    .            
T Consensus       191 ~~~d~~i~i~d~~-~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  268 (340)
T 4aow_A          191 CGWDKLVKVWNLA-NCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR  268 (340)
T ss_dssp             EETTSCEEEEETT-TTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS
T ss_pred             EcCCCEEEEEECC-CCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCC
Confidence            9999999999999 888888887 999999999999999999999999999999988653211    0            


Q ss_pred             ---------eeeeeecccccceee---------cCCCccceeeeeECCCCceEEEeecCC
Q psy6859         220 ---------KCVHFESKLDTDLFE---------FAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       220 ---------~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                               ....++.+....+..         ..+|...|++++|+|||++|++|+.||
T Consensus       269 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg  328 (340)
T 4aow_A          269 YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN  328 (340)
T ss_dssp             SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS
T ss_pred             ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC
Confidence                     001122233322222         346888999999999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1e-40  Score=253.07  Aligned_cols=239  Identities=13%  Similarity=0.115  Sum_probs=194.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||...|++++|+| +++|++|+.|++|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|++|++||+. ++
T Consensus        63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~  139 (319)
T 3frx_A           63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQ  139 (319)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SC
T ss_pred             CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC--CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CC
Confidence            7999999999999 899999999999999999987  7888999999999999999999999999999999999985 55


Q ss_pred             eeeeeeccCcceeEEEEeecCC------ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859          80 MINMIKLDFTPLTVECIHYLGD------AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
                      .+..+..+...+..+.+.+...      .++    +++.|+.|++||+++.+....+..  +...+.+++|+|++.+  +
T Consensus       140 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~----s~~~d~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~sp~g~~--l  211 (319)
T 3frx_A          140 CLATLLGHNDWVSQVRVVPNEKADDDSVTII----SAGNDKMVKAWNLNQFQIEADFIG--HNSNINTLTASPDGTL--I  211 (319)
T ss_dssp             EEEEECCCSSCEEEEEECCC------CCEEE----EEETTSCEEEEETTTTEEEEEECC--CCSCEEEEEECTTSSE--E
T ss_pred             eEEEEeccCCcEEEEEEccCCCCCCCccEEE----EEeCCCEEEEEECCcchhheeecC--CCCcEEEEEEcCCCCE--E
Confidence            6666666666666777766432      343    448999999999999887776655  4568999999999975  8


Q ss_pred             EEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859         154 VSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF  233 (261)
Q Consensus       154 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  233 (261)
                      ++++.|+.|++||++ +++++..+.  +...|.+++|+|++.+|++++.+ .+++|+++.....      .. .......
T Consensus       212 ~s~~~dg~i~iwd~~-~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~------~~-~~~~~~~  280 (319)
T 3frx_A          212 ASAGKDGEIMLWNLA-AKKAMYTLS--AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLV------DD-LRPEFAG  280 (319)
T ss_dssp             EEEETTCEEEEEETT-TTEEEEEEE--CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEE------EE-ECCCCTT
T ss_pred             EEEeCCCeEEEEECC-CCcEEEEec--CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeee------ec-cCccccc
Confidence            899999999999999 888888885  56789999999999999988755 4999998642110      00 0000011


Q ss_pred             ecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         234 EFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       234 ~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ....|...+.+++|+|||++|++|+.||
T Consensus       281 ~~~~~~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          281 YSKAAEPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             CCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred             cccCcCcceeEEEECCCCCEEEEeecCc
Confidence            1123567889999999999999999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6e-41  Score=261.32  Aligned_cols=231  Identities=16%  Similarity=0.192  Sum_probs=198.3

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM   83 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~   83 (261)
                      .|++++|+| +++|++|+.|+.|++||+.+.  +.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++....
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~  202 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT  202 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE
Confidence            599999999 899999999999999999987  78888999999999999999999999999999999999999988877


Q ss_pred             eeccCcceeEEEEee-cCCceeeeeeecCCCCeEEEEEcCCCceeeEEee-----cCCcceEEEEEEeCCCCceEEEEec
Q psy6859          84 IKLDFTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-----DFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        84 ~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      +..+ .....+.+++ ++..++++    +.|+.|++||+++++.+..+..     ..+...+.+++|+|++..  +++++
T Consensus       203 ~~~~-~~v~~~~~~~~~~~~l~~~----s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~--l~s~s  275 (393)
T 1erj_A          203 LSIE-DGVTTVAVSPGDGKYIAAG----SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS--VVSGS  275 (393)
T ss_dssp             EECS-SCEEEEEECSTTCCEEEEE----ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE--EEEEE
T ss_pred             EEcC-CCcEEEEEECCCCCEEEEE----cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE--EEEEe
Confidence            7644 3456667777 66666655    8999999999999887776632     235568999999999976  88999


Q ss_pred             CCCeEEEEEccCCC------------ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeee
Q psy6859         158 DSSHVHIYDCKGNG------------TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFE  225 (261)
Q Consensus       158 ~d~~i~i~d~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  225 (261)
                      .|+.|++||++ ..            .+...+. +|...|.+++|+|++++|++++.|+.|++||+.             
T Consensus       276 ~d~~v~~wd~~-~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~-------------  340 (393)
T 1erj_A          276 LDRSVKLWNLQ-NANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK-------------  340 (393)
T ss_dssp             TTSEEEEEEC----------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETT-------------
T ss_pred             CCCEEEEEECC-CCCCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECC-------------
Confidence            99999999997 42            2344565 899999999999999999999999999999984             


Q ss_pred             cccccceeecCCCccceeeeeECC------CCceEEEeecCC
Q psy6859         226 SKLDTDLFEFAKNKTYPSGLSFSP------DGNKFVTISMDR  261 (261)
Q Consensus       226 ~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~Dg  261 (261)
                        +++++..+.+|...|.+++|+|      ++++|++||.||
T Consensus       341 --~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg  380 (393)
T 1erj_A          341 --SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  380 (393)
T ss_dssp             --TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             --CCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence              4677888999999999999886      789999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.8e-41  Score=276.89  Aligned_cols=250  Identities=13%  Similarity=0.142  Sum_probs=206.7

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC----CcEEEEEc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD----KAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~~wd~   75 (261)
                      ||.+.|++++|+| +++||+|+.|++|+|||+.+........+.+|.++|.+++|+|++++|++++.+    +.|++|| 
T Consensus        57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd-  135 (611)
T 1nr0_A           57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD-  135 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT-
T ss_pred             CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee-
Confidence            7999999999999 999999999999999999764435566788999999999999999999998865    3677777 


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCc-eeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDA-IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                       .++....+..+...+..+.++|++.. ++++    +.|++|++||.++++.+..+..  +...|.+++|+|++..  ++
T Consensus       136 -~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~----s~D~~v~lwd~~~~~~~~~l~~--H~~~V~~v~fspdg~~--la  206 (611)
T 1nr0_A          136 -TGTSNGNLTGQARAMNSVDFKPSRPFRIISG----SDDNTVAIFEGPPFKFKSTFGE--HTKFVHSVRYNPDGSL--FA  206 (611)
T ss_dssp             -TCCBCBCCCCCSSCEEEEEECSSSSCEEEEE----ETTSCEEEEETTTBEEEEEECC--CSSCEEEEEECTTSSE--EE
T ss_pred             -CCCCcceecCCCCCceEEEECCCCCeEEEEE----eCCCeEEEEECCCCeEeeeecc--ccCceEEEEECCCCCE--EE
Confidence             45666777778888889999988764 5444    8999999999998877777654  5568999999999975  89


Q ss_pred             EecCCCeEEEEEccCCCccceeecc------CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC---------
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDR------LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP---------  219 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------  219 (261)
                      +++.|++|++||+. +++.+..+..      +|...|.+++|+|++++|++++.|++|++||+++++....         
T Consensus       207 s~s~D~~i~lwd~~-~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~  285 (611)
T 1nr0_A          207 STGGDGTIVLYNGV-DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  285 (611)
T ss_dssp             EEETTSCEEEEETT-TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             EEECCCcEEEEECC-CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence            99999999999998 7877777632      6999999999999999999999999999999976532110         


Q ss_pred             -------------------eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         220 -------------------KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       220 -------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                         ....++...+++...+.+|...|++++|+|+|++|++++.||
T Consensus       286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~  346 (611)
T 1nr0_A          286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG  346 (611)
T ss_dssp             CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence                               001122333445667789999999999999999999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-41  Score=255.32  Aligned_cols=240  Identities=15%  Similarity=0.173  Sum_probs=186.2

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCC-----ceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEE-----GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      +|.+.|++++|+| +++|++|+.|++|++|++...     ..+....+.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            4999999999999 899999999999999998532     1256778899999999999999999999999999999999


Q ss_pred             cccc----ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC--ceeeEEeecCCcceEEEEEEeCCC
Q psy6859          75 VINF----DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN--DMINMIKLDFTPLTVECIHYLGDA  148 (261)
Q Consensus        75 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  148 (261)
                      +...    +.+..+..+...+..+.+++++..++++    +.|++|++||+.++  +++..+.  .+...+.+++|+|+.
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~----s~D~~i~iW~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~  209 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS----SYDDTVRIWKDYDDDWECVAVLN--GHEGTVWSSDFDKTE  209 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE----ETTSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCSS
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE----cCCCeEEEEECCCCCeeEEEEcc--CCCCcEEEEEecCCC
Confidence            9432    4556667777788888999988877666    89999999998876  3445444  456689999999984


Q ss_pred             CceEEEEecCCCeEEEEEccCCC--------ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCe
Q psy6859         149 IPTAAVSDQDSSHVHIYDCKGNG--------TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPK  220 (261)
Q Consensus       149 ~~~~~~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  220 (261)
                      ....+++++.|++|++||++ .+        .....+...|...|.+++|++++ +|++++.||.|++||..++.     
T Consensus       210 ~~~~l~s~s~D~~v~iw~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~-----  282 (330)
T 2hes_X          210 GVFRLCSGSDDSTVRVWKYM-GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE-----  282 (330)
T ss_dssp             SSCEEEEEETTSCEEEEEEE-EECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE-----
T ss_pred             CeeEEEEEeCCCeEEEEEec-CCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc-----
Confidence            33348899999999999997 43        23444442388999999999765 79999999999999985421     


Q ss_pred             eeeeecccccce-eecCCCcc-ceeeeeECC--CCceEEEeecCC
Q psy6859         221 CVHFESKLDTDL-FEFAKNKT-YPSGLSFSP--DGNKFVTISMDR  261 (261)
Q Consensus       221 ~~~~~~~~~~~~-~~~~~~~~-~v~~~~~s~--~~~~l~s~~~Dg  261 (261)
                              .+.+ ....+|.. .|.+++|+|  ++++|++||.||
T Consensus       283 --------~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          283 --------WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG  319 (330)
T ss_dssp             --------EEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred             --------eEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence                    1222 23456877 899999999  789999999996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-41  Score=258.86  Aligned_cols=243  Identities=17%  Similarity=0.191  Sum_probs=203.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC--CCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN--GTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~v~~wd~~~   77 (261)
                      ||.++|++++|+| +++|++|+.||.|++|++.....+....+.+|...|++++|+++  +++|++++.||.|++||+.+
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~   88 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   88 (379)
T ss_dssp             ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred             CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence            6999999999999 89999999999999999986555788889999999999999976  89999999999999999998


Q ss_pred             cc--eeeeeeccCcceeEEEEeec--CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC-------
Q psy6859          78 FD--MINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG-------  146 (261)
Q Consensus        78 ~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------  146 (261)
                      ++  .+..+..+..++..+.+.++  +..++++    +.|+.|++||+++...........+...+.++.|+|       
T Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~----~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  164 (379)
T 3jrp_A           89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA----SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  164 (379)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE----ETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred             CceeEeeeecCCCcceEEEEeCCCCCCCEEEEe----cCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence            87  56666667777888888888  7777666    899999999999886555555555677899999999       


Q ss_pred             ------CCCceEEEEecCCCeEEEEEccCCCc----cceeeccCcccCeEEEEEcCC---CCEEEEEcCCCeEEEeeccc
Q psy6859         147 ------DAIPTAAVSDQDSSHVHIYDCKGNGT----PLHVLDRLHTKPVVLIKFNPI---YQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       147 ------~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~  213 (261)
                            ++..  +++++.|+.|++||++ .+.    ++..+. .|...|.+++|+|+   +++|++++.||.|++||+++
T Consensus       165 ~~~~~~~~~~--l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          165 EHNGTKESRK--FVTGGADNLVKIWKYN-SDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             -----CTTCE--EEEEETTSCEEEEEEE-TTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccCCCCCCE--EEEEeCCCeEEEEEec-CCCcceeeEEEEe-cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                  4654  8889999999999998 543    345665 89999999999999   89999999999999999865


Q ss_pred             ccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         214 QEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ...          .....+.....|...|++++|+|+|++|++++.||
T Consensus       241 ~~~----------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  278 (379)
T 3jrp_A          241 EQG----------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  278 (379)
T ss_dssp             TTS----------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred             CCc----------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence            310          00122333345889999999999999999999886

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-40  Score=253.76  Aligned_cols=242  Identities=14%  Similarity=0.155  Sum_probs=192.2

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEe-ec-cccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHF-RS-HLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-   77 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-   77 (261)
                      ||+++|++++|+|+ +|++|+.|++|++|++..........+ .+ |...|.+++|+|++++|++++.|++|++||+.. 
T Consensus        12 ~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~   90 (330)
T 2hes_X           12 LYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEES   90 (330)
T ss_dssp             CCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---
T ss_pred             cCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccC
Confidence            79999999999987 999999999999999987543555556 44 999999999999999999999999999999853 


Q ss_pred             ------cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC----ceeeEEeecCCcceEEEEEEeCC
Q psy6859          78 ------FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN----DMINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        78 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                            .+.+..+..+..++..+.++++++.++++    +.|++|++||++..    +.+..+.  .+...+.+++|+|+
T Consensus        91 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~----s~D~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~  164 (330)
T 2hes_X           91 ADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC----SRDKSVWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPS  164 (330)
T ss_dssp             ----CCCEEEEEEC----CEEEEEECTTSCEEEEE----ETTSCEEEEECCTTCCCCEEEEEEC--CCSSCEEEEEECSS
T ss_pred             cCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE----eCCCEEEEEeccCCCCCeEEEEEec--cCCCceEEEEECCC
Confidence                  34555666777788889999998877776    89999999999532    2334443  35568999999999


Q ss_pred             CCceEEEEecCCCeEEEEEccCCC--ccceeeccCcccCeEEEEEcCC--CCEEEEEcCCCeEEEeecccccccCCeeee
Q psy6859         148 AIPTAAVSDQDSSHVHIYDCKGNG--TPLHVLDRLHTKPVVLIKFNPI--YQVVVSVDKAGILEYWSGYKQEFKFPKCVH  223 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  223 (261)
                      +..  +++++.|++|++||.+ .+  +++..+. +|...|.+++|+|+  +.+|++++.|+.|++||++.......    
T Consensus       165 ~~~--l~s~s~D~~i~iW~~~-~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~----  236 (330)
T 2hes_X          165 EAL--LASSSYDDTVRIWKDY-DDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ----  236 (330)
T ss_dssp             SSE--EEEEETTSCEEEEEEE-TTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC----
T ss_pred             CCE--EEEEcCCCeEEEEECC-CCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc----
Confidence            875  8999999999999997 55  5778887 99999999999998  67899999999999999864311000    


Q ss_pred             eecccccceeecCC-CccceeeeeECCCCceEEEeecCC
Q psy6859         224 FESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       224 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                         ....+...+.+ |...|.+++|+|++ +|++++.||
T Consensus       237 ---~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg  271 (330)
T 2hes_X          237 ---QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG  271 (330)
T ss_dssp             ---EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS
T ss_pred             ---ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC
Confidence               00123444554 89999999999765 899999886

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.8e-41  Score=260.99  Aligned_cols=245  Identities=17%  Similarity=0.218  Sum_probs=199.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccc------------------cceeEEEEeeCCCEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL------------------GVIHSICTNYNGTLL   61 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l   61 (261)
                      +|.+.|++++|+| +++|++|+ ++.+++|++.++  +.+..+..|.                  ..|.+++|+|++++|
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l  138 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  138 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence            4899999999999 89999876 689999999886  5555555443                  248999999999999


Q ss_pred             EEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEE
Q psy6859          62 CTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVEC  141 (261)
Q Consensus        62 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  141 (261)
                      ++++.|+.|++||+.+++.+..+..+...+..+.+++++..++++    +.|++|++||+++++....+..   ...+.+
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~----s~d~~v~iwd~~~~~~~~~~~~---~~~v~~  211 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG----SGDRTVRIWDLRTGQCSLTLSI---EDGVTT  211 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEETTTTEEEEEEEC---SSCEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEe----cCCCcEEEEECCCCeeEEEEEc---CCCcEE
Confidence            999999999999999999988888888888899999998877766    8999999999999988777664   346889


Q ss_pred             EEEeC-CCCceEEEEecCCCeEEEEEccCCCccceeec------cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         142 IHYLG-DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD------RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       142 ~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      ++++| ++..  +++++.|+.|++||++ +++.+..+.      .+|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus       212 ~~~~~~~~~~--l~~~s~d~~v~iwd~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          212 VAVSPGDGKY--IAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             EEECSTTCCE--EEEEETTSCEEEEETT-TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             EEEECCCCCE--EEEEcCCCcEEEEECC-CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            99999 6654  8899999999999998 777776652      268899999999999999999999999999999753


Q ss_pred             cccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         215 EFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ......   .....+.+...+.+|...|.+++|+|++++|++|+.||
T Consensus       289 ~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~  332 (393)
T 1erj_A          289 NNKSDS---KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR  332 (393)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred             CCcccc---cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence            211110   00122445667788999999999999999999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-40  Score=255.35  Aligned_cols=250  Identities=16%  Similarity=0.214  Sum_probs=212.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||+++|++++|+| +++|++++.||.|++|++.+.  +.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  107 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ  107 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            7999999999999 899999999999999999887  7888899999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCC-----CeEEEEEcCCCcee-----------eEEeecCCcceEEEEE
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-----SRVHIYDCKGNDMI-----------NMIKLDFTPLTVECIH  143 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-----~~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~  143 (261)
                      .+..+. ...++..+.+.+++..+++.    +.+     +.|.+||++.....           ..+..+.....+.+++
T Consensus       108 ~~~~~~-~~~~v~~~~~~~~~~~l~~~----~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (369)
T 3zwl_B          108 CVATWK-SPVPVKRVEFSPCGNYFLAI----LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG  182 (369)
T ss_dssp             EEEEEE-CSSCEEEEEECTTSSEEEEE----ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred             EEEEee-cCCCeEEEEEccCCCEEEEe----cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence            888887 55667888889988877776    566     99999999866432           2223322233889999


Q ss_pred             EeCCCCceEEEEecCCCeEEEEEccCC-CccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC---
Q psy6859         144 YLGDAIPTAAVSDQDSSHVHIYDCKGN-GTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP---  219 (261)
Q Consensus       144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---  219 (261)
                      |+|++..  +++++.|+.|++||++ + .+.+..+. .|...|.+++|+|++++|++++.|+.|++||+++......   
T Consensus       183 ~~~~~~~--l~~~~~dg~i~i~d~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  258 (369)
T 3zwl_B          183 WSTKGKY--IIAGHKDGKISKYDVS-NNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET  258 (369)
T ss_dssp             ECGGGCE--EEEEETTSEEEEEETT-TTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EcCCCCE--EEEEcCCCEEEEEECC-CCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC
Confidence            9999975  7888899999999999 5 78888887 8999999999999999999999999999999986532110   


Q ss_pred             -------------------------------------eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         220 -------------------------------------KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       220 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                                           ....++..+++.+..+.+|...|++++|+|++++|++++.||
T Consensus       259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  337 (369)
T 3zwl_B          259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDG  337 (369)
T ss_dssp             SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence                                                 122344556677778888999999999999999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.3e-40  Score=270.52  Aligned_cols=238  Identities=13%  Similarity=0.173  Sum_probs=195.0

Q ss_pred             CCCCCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ||.+.|++++|+| +. .|++|+.|++|++||....  ++...+.+|.+.|.+++|+|++++|++++.|++|++||+.++
T Consensus       145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~--~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g  222 (611)
T 1nr0_A          145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  222 (611)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC--eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence            7999999999999 65 6999999999999998876  778889999999999999999999999999999999999999


Q ss_pred             ceeeeee-------ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee-------------------
Q psy6859          79 DMINMIK-------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-------------------  132 (261)
Q Consensus        79 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-------------------  132 (261)
                      +.+..+.       .+...+..+.+++++..++++    +.|++|++||+++++.+..+..                   
T Consensus       223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~----s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  298 (611)
T 1nr0_A          223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA----SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV  298 (611)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE----ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred             cEeeeeccccccccccCCCEEEEEECCCCCEEEEE----eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence            8887774       466678888999999887776    8999999999998876554421                   


Q ss_pred             ----------------------cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccC----------
Q psy6859         133 ----------------------DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL----------  180 (261)
Q Consensus       133 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------  180 (261)
                                            ..+...+.+++|+|++..  +++++.|+.|++||+. +++....+...          
T Consensus       299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~--l~s~s~D~~v~~Wd~~-~~~~~~~~~~~h~~~v~~~~~  375 (611)
T 1nr0_A          299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT--LFSADAEGHINSWDIS-TGISNRVFPDVHATMITGIKT  375 (611)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE--EEEEETTSCEEEEETT-TCCEEECSSCSCSSCEEEEEE
T ss_pred             EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE--EEEEeCCCcEEEEECC-CCceeeecccCCcceEEEEEE
Confidence                                  234567899999999986  8899999999999987 54332221000          


Q ss_pred             -----------------------------------------------------------------------cccCeEEEE
Q psy6859         181 -----------------------------------------------------------------------HTKPVVLIK  189 (261)
Q Consensus       181 -----------------------------------------------------------------------~~~~v~~~~  189 (261)
                                                                                             |...+.+++
T Consensus       376 s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va  455 (611)
T 1nr0_A          376 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVA  455 (611)
T ss_dssp             CTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEE
T ss_pred             CCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEE
Confidence                                                                                   223467889


Q ss_pred             EcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         190 FNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       190 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |+|+|++|++|+.|+.|++||+.++.             ...+.. .+|...|++++|+|||++|++++.|+
T Consensus       456 ~spdg~~lasgs~D~~v~lwd~~~~~-------------~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~  513 (611)
T 1nr0_A          456 LSNDKQFVAVGGQDSKVHVYKLSGAS-------------VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSR  513 (611)
T ss_dssp             ECTTSCEEEEEETTSEEEEEEEETTE-------------EEEEEE-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EeCCCCEEEEeCCCCeEEEEEccCCc-------------eeeeec-cCCCCceEEEEECCCCCEEEEEcCCC
Confidence            99999999999999999999985421             112233 56999999999999999999999885

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.7e-40  Score=273.46  Aligned_cols=255  Identities=15%  Similarity=0.204  Sum_probs=208.6

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCc---eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEG---IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      ||++.|++|+|+|  +++|++|+.|++|++|++....   ......+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~  459 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL  459 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            7999999999998  4689999999999999987632   1456778999999999999999999999999999999999


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe-ecCCcceEEEEEEeCCCCceEEE
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK-LDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      .+++....+..+...+..+.+++++..++++    +.|++|++||+.......... ...+...+.+++|+|++....++
T Consensus       460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA----SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSCEEEE----ETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred             CCCcceeEEeCCCCCEEEEEEeCCCCEEEEE----eCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence            9999999998888889999999999888776    899999999987654332221 12355679999999987545589


Q ss_pred             EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC---------------
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP---------------  219 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------  219 (261)
                      +++.|+.|++||++ ..++...+. +|...|++++|+|++++|++++.||.|++||+++++....               
T Consensus       536 s~s~d~~v~vwd~~-~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~  613 (694)
T 3dm0_A          536 SASWDKTVKVWNLS-NCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPN  613 (694)
T ss_dssp             EEETTSCEEEEETT-TCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSS
T ss_pred             EEeCCCeEEEEECC-CCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCC
Confidence            99999999999999 888888887 9999999999999999999999999999999976532110               


Q ss_pred             ----------eeeeeecccccceeecCCC-------------------ccceeeeeECCCCceEEEeecCC
Q psy6859         220 ----------KCVHFESKLDTDLFEFAKN-------------------KTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       220 ----------~~~~~~~~~~~~~~~~~~~-------------------~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                ....|+..+++.+..+..+                   ...+++++|+|+|++|++|+.||
T Consensus       614 ~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg  684 (694)
T 3dm0_A          614 RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG  684 (694)
T ss_dssp             SSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred             CcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence                      0122344444444433321                   12368899999999999999997

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.5e-40  Score=252.27  Aligned_cols=239  Identities=18%  Similarity=0.255  Sum_probs=194.1

Q ss_pred             CCCCCeEEEEEcC-C---CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859           1 MHRSPITHVVVTK-T---DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         1 gH~~~v~~~~~~~-~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~   76 (261)
                      +|.+.|++++|+| +   ++|++|+.||.|++|++.+.+......+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  116 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS  116 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence            6999999999999 4   79999999999999999874435557888999999999999999999999999999999999


Q ss_pred             ccceeeeeeccCcceeEEEE--eecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC-------------------
Q psy6859          77 NFDMINMIKLDFTPLTVECI--HYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT-------------------  135 (261)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~-------------------  135 (261)
                      +++.+... .+..++..+.+  .+++..++++    +.|+.|++||+++++.+..+..+..                   
T Consensus       117 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 3mmy_A          117 SNQAIQIA-QHDAPVKTIHWIKAPNYSCVMTG----SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERG  191 (368)
T ss_dssp             TTEEEEEE-ECSSCEEEEEEEECSSCEEEEEE----ETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGC
T ss_pred             CCCceeec-cccCceEEEEEEeCCCCCEEEEc----cCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCc
Confidence            88877644 45666777777  5666556555    8999999999998877666653321                   


Q ss_pred             --------------------cceEEEEEE--eCCCCceEEEEecCCCeEEEEEccCCC---ccceeeccCccc-------
Q psy6859         136 --------------------PLTVECIHY--LGDAIPTAAVSDQDSSHVHIYDCKGNG---TPLHVLDRLHTK-------  183 (261)
Q Consensus       136 --------------------~~~~~~~~~--~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~-------  183 (261)
                                          .....++.+  .+......+++++.|+.|++||++ ..   ..+..+. .|..       
T Consensus       192 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~-~~~~~~~~~~~~-~~~~~~~~~~~  269 (368)
T 3mmy_A          192 LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN-PPNPAKDNFTFK-CHRSNGTNTSA  269 (368)
T ss_dssp             EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS-CSCHHHHSEEEE-CSEEC----CC
T ss_pred             EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC-CCCccccceeee-eeecccccccc
Confidence                                011223333  232222337888999999999998 55   4566666 6665       


Q ss_pred             -----CeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         184 -----PVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       184 -----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                           +|++++|+|++++|++++.||.|++||++               +++++..+.+|...|.+++|+|+|++|++++
T Consensus       270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~---------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD---------------ARTKLKTSEQLDQPISACCFNHNGNIFAYAS  334 (368)
T ss_dssp             CEEECCEEEEEECTTTCCEEEEETTSCEEEEETT---------------TTEEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred             cccccceEEEEEecCCCEEEEEccCCeEEEEECC---------------CCcEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence                 79999999999999999999999999994               4677888899999999999999999999999


Q ss_pred             cCC
Q psy6859         259 MDR  261 (261)
Q Consensus       259 ~Dg  261 (261)
                      .|+
T Consensus       335 ~d~  337 (368)
T 3mmy_A          335 SYD  337 (368)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            875

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.5e-40  Score=252.83  Aligned_cols=236  Identities=11%  Similarity=0.115  Sum_probs=189.2

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCC---------ceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEE---------GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAM   70 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v   70 (261)
                      +|...|.+++|+| |++|++++ |+++++||....         ..........|...|.+++|+|++ .|++++.||+|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v  105 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV  105 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence            3677899999999 88888777 778888863210         001111223366789999999985 78899999999


Q ss_pred             EEEEccccceeeeee----ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC
Q psy6859          71 KVFDVINFDMINMIK----LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG  146 (261)
Q Consensus        71 ~~wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (261)
                      ++||+.+++.+....    .|...+..+.++++++.++++    +.|++|++||+++++.+..+..  +...|.+++|++
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg----s~d~~i~iwd~~~~~~~~~~~~--h~~~V~~~~~~~  179 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG----SKDICIKVWDLAQQVVLSSYRA--HAAQVTCVAASP  179 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECS
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEE----eCCCeEEEEECCCCcEEEEEcC--cCCceEEEEecC
Confidence            999999887655433    456678888999999887776    8999999999999998888775  456899999999


Q ss_pred             CCCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCC-CCEEEEEcCCCeEEEeecccccccCCeeeee
Q psy6859         147 DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPI-YQVVVSVDKAGILEYWSGYKQEFKFPKCVHF  224 (261)
Q Consensus       147 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  224 (261)
                      ++.. ++++++.|++|++||++ +++++..+. ..+...+++++|+|+ +++|++|+.||.|++||++            
T Consensus       180 ~~~~-~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~------------  245 (344)
T 4gqb_B          180 HKDS-VFLSCSEDNRILLWDTR-CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK------------  245 (344)
T ss_dssp             SCTT-EEEEEETTSCEEEEETT-SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC------------
T ss_pred             CCCC-ceeeecccccccccccc-ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC------------
Confidence            9865 37889999999999999 888887774 245667999999995 5688999999999999994            


Q ss_pred             ecccccceeecCCCccceeeeeECCCC-ceEEEeecCC
Q psy6859         225 ESKLDTDLFEFAKNKTYPSGLSFSPDG-NKFVTISMDR  261 (261)
Q Consensus       225 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~Dg  261 (261)
                         +++++..+.+|...|++++|+|++ ++|++||.||
T Consensus       246 ---~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~  280 (344)
T 4gqb_B          246 ---STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC  280 (344)
T ss_dssp             ---C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             ---CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence               467888999999999999999998 5799999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.5e-40  Score=266.64  Aligned_cols=229  Identities=19%  Similarity=0.345  Sum_probs=204.3

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|..+|++++|+| +++|++++.|+.|++|+...   +.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++
T Consensus       342 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~  417 (577)
T 2ymu_A          342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ  417 (577)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC---CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCC
Confidence            5889999999999 89999999999999999654   577788899999999999999999999999999999995 677


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+..+..+..++..+.+++++..++++    +.|+.|++||+. ++.+..+..  +...+.+++|+|++..  +++++.|
T Consensus       418 ~~~~~~~~~~~v~~~~~s~d~~~l~~~----~~d~~v~~w~~~-~~~~~~~~~--~~~~v~~~~~spd~~~--las~~~d  488 (577)
T 2ymu_A          418 LLQTLTGHSSSVWGVAFSPDDQTIASA----SDDKTVKLWNRN-GQLLQTLTG--HSSSVRGVAFSPDGQT--IASASDD  488 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEE----ETTSEEEEEETT-SCEEEEEEC--CSSCEEEEEECTTSCE--EEEEETT
T ss_pred             EEEEecCCCCCeEEEEECCCCCEEEEE----cCCCEEEEEECC-CCEEEEEcC--CCCCEEEEEEcCCCCE--EEEEeCC
Confidence            888888788888888999998877766    899999999974 455666654  4557899999999986  8899999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      +.|++||.  +++++..+. +|...|++++|+|++++|++++.||.|++||..                ++++..+.+|.
T Consensus       489 ~~i~iw~~--~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~----------------~~~~~~~~~h~  549 (577)
T 2ymu_A          489 KTVKLWNR--NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------------GQLLQTLTGHS  549 (577)
T ss_dssp             SEEEEEET--TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----------------SCEEEEEECCS
T ss_pred             CEEEEEcC--CCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC----------------CCEEEEEcCCC
Confidence            99999995  678888998 999999999999999999999999999999963                56788889999


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..|++++|+|||++|+++|.||
T Consensus       550 ~~v~~~~fs~dg~~l~s~~~D~  571 (577)
T 2ymu_A          550 SSVWGVAFSPDGQTIASASSDK  571 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTS
T ss_pred             CCEEEEEEcCCCCEEEEEeCCC
Confidence            9999999999999999999986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.1e-39  Score=248.18  Aligned_cols=253  Identities=16%  Similarity=0.130  Sum_probs=203.8

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~   75 (261)
                      ||++.|++++|+| +++|++|+.||.|++|++.+..  .+....+.+|...|.+++|+|  ++++|++++.||.|++||+
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~   88 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE   88 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred             ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence            7999999999999 8999999999999999998642  246777889999999999999  6999999999999999999


Q ss_pred             ccc---------ceeeeeeccCcceeEEEEeec--CCceeeeeeecCCCCeEEEEEcCCCceeeEEee-----------c
Q psy6859          76 INF---------DMINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-----------D  133 (261)
Q Consensus        76 ~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-----------~  133 (261)
                      .++         +.+..+..+..++..+.+.++  +..++++    +.|+.|++||+++++.+..+..           .
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL----GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE----ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe----cCCCcEEEecCCChHHhccccccccccccccccC
Confidence            876         446666667777888888888  7777766    8999999999998875544331           1


Q ss_pred             CCcceEEEEEEeCC---CCceEEEEecCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCC----CEEEEEcCCC
Q psy6859         134 FTPLTVECIHYLGD---AIPTAAVSDQDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIY----QVVVSVDKAG  204 (261)
Q Consensus       134 ~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg  204 (261)
                      .+...+.++.|+|+   +.  .+++++.++.+.+|+.. .++.  +..+. .|...|++++|+|++    ++|++++.||
T Consensus       165 ~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPE--KLAVSALEQAIIYQRGK-DGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCC--EEEEEETTEEEEEEECT-TSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             CcccceeEEEeccCCCCCc--EEEEecCCCcEEEEccC-CCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence            24457899999997   54  37888889999888776 5544  66676 899999999999998    8999999999


Q ss_pred             eEEEeecccccccCCe-------------------------------eeeeecccccceeecCCCccceeeeeECCCCce
Q psy6859         205 ILEYWSGYKQEFKFPK-------------------------------CVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNK  253 (261)
Q Consensus       205 ~i~iwd~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  253 (261)
                      .|++||++........                               ...++....+.+..+.+|...|++++|+|++++
T Consensus       241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  320 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI  320 (351)
T ss_dssp             CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred             eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence            9999999764211100                               000112234677788899999999999999999


Q ss_pred             EEEeecCC
Q psy6859         254 FVTISMDR  261 (261)
Q Consensus       254 l~s~~~Dg  261 (261)
                      |++++.||
T Consensus       321 l~s~~~dg  328 (351)
T 3f3f_A          321 LSSAGDDG  328 (351)
T ss_dssp             EEEEETTS
T ss_pred             EEEecCCC
Confidence            99999986

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-41  Score=262.39  Aligned_cols=236  Identities=8%  Similarity=0.018  Sum_probs=191.7

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc-
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD-   79 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~-   79 (261)
                      |.++|++++|+| +++|++|+.|+.|++|++.+...+....+.+|...|.+++|+|++++|++++.|+.|++||+.+++ 
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT   89 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence            567999999999 899999999999999999976546778889999999999999999999999999999999999877 


Q ss_pred             --eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce---eeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          80 --MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM---INMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        80 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                        ....+..+...+..+.++++++.++++    +.|+.|++||+++++.   ...+.. .+...+.+++|+|++..  ++
T Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~--l~  162 (377)
T 3dwl_C           90 WKQTLVLLRLNRAATFVRWSPNEDKFAVG----SGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVL--LA  162 (377)
T ss_dssp             CCCEEECCCCSSCEEEEECCTTSSCCEEE----ESSSCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTSSE--EE
T ss_pred             eeeeeEecccCCceEEEEECCCCCEEEEE----ecCCeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCCCE--EE
Confidence              455555667778888888888877776    8999999999998763   444443 15668999999999875  88


Q ss_pred             EecCCCeEEEEEccC-----------------CCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc
Q psy6859         155 SDQDSSHVHIYDCKG-----------------NGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK  217 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  217 (261)
                      +++.|+.|++||++.                 .++++..+  .|...|++++|+|++++|++++.||.|++||+++    
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~----  236 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA----  236 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS----
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC----
Confidence            999999999999851                 23345555  6889999999999999999999999999999964    


Q ss_pred             CCeeeeeecccccc----eeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         218 FPKCVHFESKLDTD----LFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       218 ~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                 ++.    +..+.+|...|.+++|+|++++|++++.|+
T Consensus       237 -----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          237 -----------PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             -----------TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS
T ss_pred             -----------CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc
Confidence                       333    677888999999999999999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.4e-40  Score=251.88  Aligned_cols=237  Identities=12%  Similarity=0.131  Sum_probs=188.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecC------CCeEEEEeccCCce--eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASN------DGHIKFWKKQEEGI--EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMK   71 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~------d~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~   71 (261)
                      +|+..|++++|+| |++|++|+.      |+.|++|+..+...  .......+|...|.+++|+|+++ +++++.||+|+
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~  118 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVE  118 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEE
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEE
Confidence            5999999999999 999999998      78899998866421  22334456889999999999985 56678899999


Q ss_pred             EEEccccceeeeee----ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC
Q psy6859          72 VFDVINFDMINMIK----LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        72 ~wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                      +||+.+++......    .+..++..+.++++++.++++    +.|+.|++||+++++.+..+..  +...+.+++|+++
T Consensus       119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sg----s~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~s~~  192 (357)
T 4g56_B          119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSG----GKDFSVKVWDLSQKAVLKSYNA--HSSEVNCVAACPG  192 (357)
T ss_dssp             EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEE----ETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECTT
T ss_pred             EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEE----eCCCeEEEEECCCCcEEEEEcC--CCCCEEEEEEccC
Confidence            99998876544322    345678888899999887776    8999999999999988888765  4557899999998


Q ss_pred             CCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCC-CEEEEEcCCCeEEEeecccccccCCeeeeee
Q psy6859         148 AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIY-QVVVSVDKAGILEYWSGYKQEFKFPKCVHFE  225 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  225 (261)
                      +.. ++++++.|+.|++||++ +++++..+. ..+...+++++|+|++ .+|++|+.|+.|++||++             
T Consensus       193 ~~~-~~~s~~~dg~v~~wd~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~-------------  257 (357)
T 4g56_B          193 KDT-IFLSCGEDGRILLWDTR-KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK-------------  257 (357)
T ss_dssp             CSS-CEEEEETTSCEEECCTT-SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS-------------
T ss_pred             CCc-eeeeeccCCceEEEECC-CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC-------------
Confidence            764 37788899999999998 777766554 2567789999999985 588999999999999995             


Q ss_pred             cccccceeecCCCccceeeeeECCCC-ceEEEeecCC
Q psy6859         226 SKLDTDLFEFAKNKTYPSGLSFSPDG-NKFVTISMDR  261 (261)
Q Consensus       226 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~Dg  261 (261)
                        +++++..+.+|...|++++|+|++ ++||+|+.||
T Consensus       258 --~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~  292 (357)
T 4g56_B          258 --NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDC  292 (357)
T ss_dssp             --CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             --CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence              467788899999999999999987 5799999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.5e-40  Score=258.38  Aligned_cols=251  Identities=13%  Similarity=0.096  Sum_probs=193.2

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      +|...|+||+|+|  +++||+|+.||.|+|||+.+........+.+|.+.|++|+|+| ++++|++++.||+|++||+++
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~  196 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG  196 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence            4788999999999  5689999999999999998765456667788999999999998 688999999999999999976


Q ss_pred             cceeeeeeccC--cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          78 FDMINMIKLDF--TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        78 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      +........+.  .....+.+++++..++++    +.|+.|++||++.. .+..+..  +...|.+++|+|++.. ++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g----~~dg~i~~wd~~~~-~~~~~~~--h~~~v~~v~~~p~~~~-~~~s  268 (435)
T 4e54_B          197 NILRVFASSDTINIWFCSLDVSASSRMVVTG----DNVGNVILLNMDGK-ELWNLRM--HKKKVTHVALNPCCDW-FLAT  268 (435)
T ss_dssp             CEEEEEECCSSCSCCCCCEEEETTTTEEEEE----CSSSBEEEEESSSC-BCCCSBC--CSSCEEEEEECTTCSS-EEEE
T ss_pred             CceeEEeccCCCCccEEEEEECCCCCEEEEE----eCCCcEeeeccCcc-eeEEEec--ccceEEeeeecCCCce-EEEE
Confidence            54433333222  234566777888777666    99999999999764 4444443  5568999999999875 4778


Q ss_pred             ecCCCeEEEEEccCCCccceeec--cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC---------------
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLD--RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF---------------  218 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------  218 (261)
                      ++.|+.|++||++ ..+....+.  .+|...|++++|+|++++|++++.||.|++||+.+.....               
T Consensus       269 ~s~d~~v~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  347 (435)
T 4e54_B          269 ASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP  347 (435)
T ss_dssp             EETTSBCCEEETT-TCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred             ecCcceeeEEecc-cccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccccee
Confidence            8899999999998 554433321  2789999999999999999999999999999987642100               


Q ss_pred             ------C------------------------eeeeeecccccceeecC-CCccceeee-eECCCCceEEEeecC
Q psy6859         219 ------P------------------------KCVHFESKLDTDLFEFA-KNKTYPSGL-SFSPDGNKFVTISMD  260 (261)
Q Consensus       219 ------~------------------------~~~~~~~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~s~~~D  260 (261)
                            +                        ....++..+++.+..+. +|...|.++ +|+|+|++|++|+.+
T Consensus       348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~  421 (435)
T 4e54_B          348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGY  421 (435)
T ss_dssp             CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSS
T ss_pred             EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCC
Confidence                  0                        00123444555555544 578888887 699999999998743

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.5e-39  Score=253.77  Aligned_cols=236  Identities=13%  Similarity=0.163  Sum_probs=203.3

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCc----eeeeEEeeccccceeEEEEeeC----C---CEEEEEeCCCc
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEG----IEFVKHFRSHLGVIHSICTNYN----G---TLLCTVASDKA   69 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~----~~~~~~~~~~~~~v~~~~~~~~----~---~~l~s~~~dg~   69 (261)
                      ||+++|++++|+| ++|++|+.||.|++|++.+..    ......+.+|...|.+++|+|+    +   ++|++++.||.
T Consensus        14 ~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~   92 (397)
T 1sq9_A           14 AHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD   92 (397)
T ss_dssp             CSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred             hhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCC
Confidence            7999999999999 899999999999999998863    2267788899999999999999    9   99999999999


Q ss_pred             EEEEEccccce-----eeeeecc-----CcceeEEEEe----ecCCc-eeeeeeecCCCCeEEEEEcCC------Cceee
Q psy6859          70 MKVFDVINFDM-----INMIKLD-----FTPLTVECIH----YLGDA-IPTAAVSDQDSSRVHIYDCKG------NDMIN  128 (261)
Q Consensus        70 v~~wd~~~~~~-----~~~~~~~-----~~~~~~~~~~----~~~~~-~~~~~~s~~~d~~i~i~d~~~------~~~~~  128 (261)
                      |++||+.+++.     ...+..+     ...+..+.+.    +++.. ++++    +.|+.|++||+++      ++.+.
T Consensus        93 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~  168 (397)
T 1sq9_A           93 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT----DVKGTTYIWKFHPFADESNSLTLN  168 (397)
T ss_dssp             EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE----ETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE----eCCCcEEEEeCCccccccccceee
Confidence            99999998886     7777666     4678888888    88887 6665    8999999999998      66655


Q ss_pred             -----EEee-----cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccC---c---ccCeEEEEEcC
Q psy6859         129 -----MIKL-----DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL---H---TKPVVLIKFNP  192 (261)
Q Consensus       129 -----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---~---~~~v~~~~~~~  192 (261)
                           .+..     ..+...+.+++|+|++ .  +++++.|+.|++||++ +++++..+. .   |   ...|.+++|+|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~--l~~~~~dg~i~i~d~~-~~~~~~~~~-~~~~h~~~~~~i~~i~~~~  243 (397)
T 1sq9_A          169 WSPTLELQGTVESPMTPSQFATSVDISERG-L--IATGFNNGTVQISELS-TLRPLYNFE-SQHSMINNSNSIRSVKFSP  243 (397)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-E--EEEECTTSEEEEEETT-TTEEEEEEE-CCC---CCCCCEEEEEECS
T ss_pred             ccCcceeeeeeccccCCCCCceEEEECCCc-e--EEEEeCCCcEEEEECC-CCceeEEEe-ccccccccCCccceEEECC
Confidence                 6654     4456688999999999 4  8889999999999999 888888887 7   8   99999999999


Q ss_pred             CCCEEEEEcCC---CeEEEeecccccccCCeeeeeecccccceeecCC-------------CccceeeeeECCCCceEEE
Q psy6859         193 IYQVVVSVDKA---GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-------------NKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       193 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~s  256 (261)
                      ++++|++++.|   +.|++||+++               ++.+..+..             |...|.+++|+|++++|++
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  308 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETEF---------------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  308 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTT---------------CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             CCCEEEEEecCCCCceEEEEECCC---------------CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE
Confidence            99999999999   9999999954               566777777             9999999999999999999


Q ss_pred             eecCC
Q psy6859         257 ISMDR  261 (261)
Q Consensus       257 ~~~Dg  261 (261)
                      ++.||
T Consensus       309 ~~~dg  313 (397)
T 1sq9_A          309 AGWDG  313 (397)
T ss_dssp             EETTS
T ss_pred             EeCCC
Confidence            99886

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-40  Score=262.63  Aligned_cols=252  Identities=8%  Similarity=0.013  Sum_probs=191.8

Q ss_pred             CCCCCeEEEEEcCC-------CeEEEecCCCeEEEEeccCCce---------eeeEEeeccccceeEEEEeeCCCEEEEE
Q psy6859           1 MHRSPITHVVVTKT-------DFVITASNDGHIKFWKKQEEGI---------EFVKHFRSHLGVIHSICTNYNGTLLCTV   64 (261)
Q Consensus         1 gH~~~v~~~~~~~~-------~~l~s~~~d~~i~iw~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~   64 (261)
                      +|.+.|++++|+|.       .+||+++.||+|++|++.....         .+...+.+|...|++++|++++ .|++|
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasg  283 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCG  283 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEE
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEE
Confidence            36788999999983       5899999999999999976421         1234678899999999999864 89999


Q ss_pred             eCCCcEEEEEccccc-eeeeeeccCcceeEE--EEeecC-CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEE
Q psy6859          65 ASDKAMKVFDVINFD-MINMIKLDFTPLTVE--CIHYLG-DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVE  140 (261)
Q Consensus        65 ~~dg~v~~wd~~~~~-~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  140 (261)
                      +.||+|++||+.+++ ....+..+..++..+  .+++++ ..++++    +.|++|++||+++++.+..+..+.....+.
T Consensus       284 s~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~----S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          284 FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV----AVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             ETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE----ETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             eCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe----ccCCeEEEEECCCCCcccccccccccCccc
Confidence            999999999998764 444566677777766  334555 455555    899999999999888777666554333478


Q ss_pred             EEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCe
Q psy6859         141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPK  220 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  220 (261)
                      +++|+|++..  +++++.|++|++||++ .+.++..+. +|...|++++|+|++++|++|+.||+|++||+..+.+....
T Consensus       360 ~v~fsp~~~~--l~s~~~d~tv~lwd~~-~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~  435 (524)
T 2j04_B          360 PVVYCPQIYS--YIYSDGASSLRAVPSR-AAFAVHPLV-SRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIK  435 (524)
T ss_dssp             CEEEETTTTE--EEEECSSSEEEEEETT-CTTCCEEEE-ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC-
T ss_pred             ceEeCCCcCe--EEEeCCCCcEEEEECc-ccccceeee-cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccc
Confidence            8999999875  7888889999999999 888888887 89999999999999999999999999999997654322100


Q ss_pred             ------------eeeeec-----------------ccccceeecCCCccceeeeeECCCCc---eEEEeecCC
Q psy6859         221 ------------CVHFES-----------------KLDTDLFEFAKNKTYPSGLSFSPDGN---KFVTISMDR  261 (261)
Q Consensus       221 ------------~~~~~~-----------------~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~Dg  261 (261)
                                  ...+..                 .++..+..+.+|...|++++|+|+++   +||+|+.||
T Consensus       436 ~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g  508 (524)
T 2j04_B          436 NSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAG  508 (524)
T ss_dssp             -----CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTS
T ss_pred             cCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCc
Confidence                        011110                 12455677888999999999999964   999999886

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-39  Score=269.71  Aligned_cols=243  Identities=17%  Similarity=0.186  Sum_probs=204.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC--CCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN--GTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~v~~wd~~~   77 (261)
                      ||.++|++++|+| +++|++|+.||.|++|++.....+....+.+|.++|.+++|+|+  +++|++++.||.|++||+.+
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~   86 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN   86 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence            7999999999999 89999999999999999986555788889999999999999987  99999999999999999998


Q ss_pred             cc--eeeeeeccCcceeEEEEeec--CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC------
Q psy6859          78 FD--MINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD------  147 (261)
Q Consensus        78 ~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------  147 (261)
                      ++  .+..+..+..++..+.++++  +..++++    +.|+.|++||++++..........++..+.++.|+|.      
T Consensus        87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg----s~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA----SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE----ETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             CcccccccccCCCCCeEEEEECCCCCCCEEEEE----eCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            86  56666667778888899888  7777666    8999999999998855555555556778999999994      


Q ss_pred             -------CCceEEEEecCCCeEEEEEccCCC----ccceeeccCcccCeEEEEEcCC---CCEEEEEcCCCeEEEeeccc
Q psy6859         148 -------AIPTAAVSDQDSSHVHIYDCKGNG----TPLHVLDRLHTKPVVLIKFNPI---YQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       148 -------~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~  213 (261)
                             +..  +++|+.||.|++||++ .+    .++..+. .|..+|++++|+|+   +++|++++.||.|++||+.+
T Consensus       163 ~~~~~~d~~~--l~sgs~dg~I~iwd~~-~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          163 EHNGTKESRK--FVTGGADNLVKIWKYN-SDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             ----CGGGCC--EEEEETTSCEEEEEEE-TTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             ccccCCCCCE--EEEEECCCeEEEEecc-CCcccceeeeeec-CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence                   554  8899999999999998 55    4456666 89999999999999   89999999999999999965


Q ss_pred             ccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         214 QEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +..          .....+.....|...|++++|+|+|++|++++.||
T Consensus       239 ~~~----------~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg  276 (753)
T 3jro_A          239 EQG----------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  276 (753)
T ss_dssp             SSS----------CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred             CCC----------cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence            311          11123344456889999999999999999999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-38  Score=246.12  Aligned_cols=238  Identities=11%  Similarity=0.028  Sum_probs=202.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      .|.++|++++|+| +++|++++.|+.|++|++.+...+....+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence            3889999999999 899999999999999999987444888999999999999999999999999999999999998887


Q ss_pred             eeeeee--ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE--eecCCcceEEEEEEeCCCCceEEEE
Q psy6859          80 MINMIK--LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI--KLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        80 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      ....+.  .+...+..+.++++++.++++    +.|+.|++||++..+.....  ....+...+.+++|+|++..  +++
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~  159 (372)
T 1k8k_C           86 WKPTLVILRINRAARCVRWAPNEKKFAVG----SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL--LAA  159 (372)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEE----ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE--EEE
T ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEE----eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE--EEE
Confidence            555443  355567788888888877766    89999999999987642221  12334668999999999875  888


Q ss_pred             ecCCCeEEEEEcc-----------------CCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC
Q psy6859         156 DQDSSHVHIYDCK-----------------GNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF  218 (261)
Q Consensus       156 ~~~d~~i~i~d~~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  218 (261)
                      ++.|+.|++||++                 ..++++..+. .|...|.+++|+|++++|++++.|+.|++||+++     
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----  233 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK-----  233 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG-----
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC-----
Confidence            8999999999953                 1467778887 8999999999999999999999999999999953     


Q ss_pred             CeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         219 PKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                ++++..+..|...|.+++|+|++++|+++ .||
T Consensus       234 ----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~  265 (372)
T 1k8k_C          234 ----------KMAVATLASETLPLLAVTFITESSLVAAG-HDC  265 (372)
T ss_dssp             ----------TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTS
T ss_pred             ----------CceeEEEccCCCCeEEEEEecCCCEEEEE-eCC
Confidence                      67788888999999999999999999887 553

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.5e-38  Score=245.02  Aligned_cols=248  Identities=15%  Similarity=0.115  Sum_probs=200.9

Q ss_pred             CCCCCeEEEEEcC-C-CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-T-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      +|.+.|++++|+| + ++|++|+.||.|++|++.+..........+|...|.+++|+| ++++|++++.|+.|++||+..
T Consensus        71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (383)
T 3ei3_B           71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG  150 (383)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred             CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence            6999999999999 7 899999999999999999874344444457999999999999 789999999999999999985


Q ss_pred             cceeeeeeccC---cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          78 FDMINMIKLDF---TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        78 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                       ..+..+..+.   ..+..+.+++++..++++    +.|+.|++||++ ++.+..+..  +...+.+++|+|++.. +++
T Consensus       151 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~i~d~~-~~~~~~~~~--h~~~v~~~~~~~~~~~-~l~  221 (383)
T 3ei3_B          151 -SVIQVFAKTDSWDYWYCCVDVSVSRQMLATG----DSTGRLLLLGLD-GHEIFKEKL--HKAKVTHAEFNPRCDW-LMA  221 (383)
T ss_dssp             -CEEEEEECCCCSSCCEEEEEEETTTTEEEEE----ETTSEEEEEETT-SCEEEEEEC--SSSCEEEEEECSSCTT-EEE
T ss_pred             -CceEEEeccCCCCCCeEEEEECCCCCEEEEE----CCCCCEEEEECC-CCEEEEecc--CCCcEEEEEECCCCCC-EEE
Confidence             4444444332   557788888888877766    899999999994 556666654  4568999999999974 388


Q ss_pred             EecCCCeEEEEEccCC----CccceeeccCcccCeEEEEEcC-CCCEEEEEcCCCeEEEeecccccccC-----------
Q psy6859         155 SDQDSSHVHIYDCKGN----GTPLHVLDRLHTKPVVLIKFNP-IYQVVVSVDKAGILEYWSGYKQEFKF-----------  218 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~-----------  218 (261)
                      +++.|+.|++||++ +    +.++..+  .|...|++++|+| ++++|++++.|+.|++||+++.....           
T Consensus       222 s~~~d~~i~iwd~~-~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  298 (383)
T 3ei3_B          222 TSSVDATVKLWDLR-NIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ  298 (383)
T ss_dssp             EEETTSEEEEEEGG-GCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred             EEeCCCEEEEEeCC-CCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence            88999999999998 6    4556666  6999999999999 99999999999999999987643210           


Q ss_pred             -------------------------------CeeeeeecccccceeecCC--CccceeeeeECCCCceEEEeecCC
Q psy6859         219 -------------------------------PKCVHFESKLDTDLFEFAK--NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       219 -------------------------------~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                                     .....++..+++.+..+.+  |...+..++|+|++++|++++ ||
T Consensus       299 ~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~  373 (383)
T 3ei3_B          299 HLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF  373 (383)
T ss_dssp             TSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred             cccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence                                           1123456667788888876  557777789999999999997 64

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7e-38  Score=238.91  Aligned_cols=233  Identities=16%  Similarity=0.163  Sum_probs=203.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|...|++++|+| +++|++++.|+.|++|++.+........+..|...|.+++|+|+++++++++.||.|++||+.+++
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~  174 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            4888999999999 889999999999999999987545777888899999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+..+..+...+..+.++++++.+++.    +.|+.|++||+++++.+..+.   .+..+.+++|+|++..  +++++.+
T Consensus       175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~~~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~--l~~~~~~  245 (337)
T 1gxr_A          175 LVRQFQGHTDGASCIDISNDGTKLWTG----GLDNTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEW--LAVGMES  245 (337)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSE--EEEEETT
T ss_pred             eeeeeecccCceEEEEECCCCCEEEEE----ecCCcEEEEECCCCceEeeec---CCCceEEEEECCCCCE--EEEEcCC
Confidence            988888777888888999988877766    899999999999998877765   3457899999999975  7788889


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      +.|++||++ ..+.. .+. .|...|.+++|+|++++|++++.||.|++||+.+               ++.+.. ..|.
T Consensus       246 ~~i~~~~~~-~~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~---------------~~~~~~-~~~~  306 (337)
T 1gxr_A          246 SNVEVLHVN-KPDKY-QLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY---------------GASIFQ-SKES  306 (337)
T ss_dssp             SCEEEEETT-SSCEE-EEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---------------CCEEEE-EECS
T ss_pred             CcEEEEECC-CCCeE-EEc-CCccceeEEEECCCCCEEEEecCCCcEEEEECCC---------------CeEEEE-ecCC
Confidence            999999998 65544 454 7999999999999999999999999999999954               333332 3478


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..|.+++|+|++++|++++.||
T Consensus       307 ~~v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          307 SSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             SCEEEEEECTTSCEEEEEETTS
T ss_pred             CcEEEEEECCCCCEEEEecCCC
Confidence            8999999999999999999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.3e-38  Score=257.26  Aligned_cols=229  Identities=19%  Similarity=0.348  Sum_probs=203.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||..+|++++|+| ++.|++++.|+.|++|+...   ..+..+.+|...|.+++|+|+++++++++.|+.+++||. +++
T Consensus       301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~  376 (577)
T 2ymu_A          301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQ  376 (577)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCC
T ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC---CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCC
Confidence            6999999999999 89999999999999999876   355677889999999999999999999999999999995 677


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+..+..+..++..+.++++++.+++.    +.|+.|++||. +++.+..+..  +...+.+++|+|++..  +++++.|
T Consensus       377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~----~~d~~v~~~~~-~~~~~~~~~~--~~~~v~~~~~s~d~~~--l~~~~~d  447 (577)
T 2ymu_A          377 LLQTLTGHSSSVRGVAFSPDGQTIASA----SDDKTVKLWNR-NGQLLQTLTG--HSSSVWGVAFSPDDQT--IASASDD  447 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEE----ETTSEEEEECT-TCCEEEEEEC--CSSCEEEEEECTTSSE--EEEEETT
T ss_pred             EEEEecCCCCCeEEEEECCCCCEEEEE----eCCCEEEEEeC-CCCEEEEecC--CCCCeEEEEECCCCCE--EEEEcCC
Confidence            888888788888889999999888776    89999999996 4556666654  4557899999999975  8889999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      +.|++||.  +++.+..+. +|...|++++|+|++++|++++.|+.|++||..                ++++..+.+|.
T Consensus       448 ~~v~~w~~--~~~~~~~~~-~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~----------------~~~~~~~~~h~  508 (577)
T 2ymu_A          448 KTVKLWNR--NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------------GQLLQTLTGHS  508 (577)
T ss_dssp             SEEEEEET--TSCEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSEEEEEETT----------------SCEEEEEECCS
T ss_pred             CEEEEEEC--CCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC----------------CCEEEEEeCCC
Confidence            99999996  567788887 899999999999999999999999999999953                56788889999


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..|++++|+|+|++|++++.||
T Consensus       509 ~~v~~l~~s~dg~~l~s~~~dg  530 (577)
T 2ymu_A          509 SSVRGVAFSPDGQTIASASDDK  530 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTS
T ss_pred             CCEEEEEEcCCCCEEEEEECcC
Confidence            9999999999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.3e-38  Score=242.20  Aligned_cols=200  Identities=16%  Similarity=0.223  Sum_probs=183.2

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      ||.+.|.++.|+++..+++++.|++|++||+.++  +.+..+.+|.+.|.+++|+|+++++++++.|+.|++||+.+++.
T Consensus       141 ~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~  218 (340)
T 1got_B          141 GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG--QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC  218 (340)
T ss_dssp             CCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred             CCCccEEEEEECCCCcEEEEECCCcEEEEECCCC--cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee
Confidence            6999999999999667999999999999999987  78889999999999999999999999999999999999999999


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      +..+..+..++..+.++|++..++++    +.|+.|++||+++++.+..+........+.+++|+|++..  +++|+.|+
T Consensus       219 ~~~~~~h~~~v~~v~~~p~~~~l~s~----s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~g~~d~  292 (340)
T 1got_B          219 RQTFTGHESDINAICFFPNGNAFATG----SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL--LLAGYDDF  292 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE--EEEEETTS
T ss_pred             EEEEcCCcCCEEEEEEcCCCCEEEEE----cCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE--EEEECCCC
Confidence            99988888889999999998877766    8999999999999887777765444457999999999975  88999999


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      .|++||+. +++.+..+. +|..+|.+++|+|++++|++++.|+.|++||
T Consensus       293 ~i~vwd~~-~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          293 NCNVWDAL-KADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETT-TCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eEEEEEcc-cCcEeeEee-cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999998 888888898 9999999999999999999999999999997

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=242.44  Aligned_cols=252  Identities=11%  Similarity=0.160  Sum_probs=202.4

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEe-----------eccccceeEEEEee-CCCEEEEEeC
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHF-----------RSHLGVIHSICTNY-NGTLLCTVAS   66 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~-~~~~l~s~~~   66 (261)
                      +|.++|++++|+|  +++|++|+.||.|++|++.+.........           .+|...|.+++|+| ++++|++++.
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  120 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF  120 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred             ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence            6999999999998  67999999999999999987532211111           25899999999999 7889999999


Q ss_pred             CCcEEEEEccccceeeeeeccCcceeEEEEeecCC---ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEE
Q psy6859          67 DKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD---AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIH  143 (261)
Q Consensus        67 dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  143 (261)
                      ||.|++||+.+++....+... .......+.+.+.   .+++.    +.++.|++||+++++.+..+..  +...+.+++
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~d~~~~~~~~~~~~--~~~~v~~~~  193 (408)
T 4a11_B          121 DKTLKVWDTNTLQTADVFNFE-ETVYSHHMSPVSTKHCLVAVG----TRGPKVQLCDLKSGSCSHILQG--HRQEILAVS  193 (408)
T ss_dssp             TSEEEEEETTTTEEEEEEECS-SCEEEEEECSSCSSCCEEEEE----ESSSSEEEEESSSSCCCEEECC--CCSCEEEEE
T ss_pred             CCeEEEeeCCCCccceeccCC-CceeeeEeecCCCCCcEEEEE----cCCCeEEEEeCCCcceeeeecC--CCCcEEEEE
Confidence            999999999999888887744 3455556655432   44444    8999999999999988877765  455799999


Q ss_pred             EeCCCCceEEEEecCCCeEEEEEccCCCccceee---------------ccCcccCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy6859         144 YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVL---------------DRLHTKPVVLIKFNPIYQVVVSVDKAGILEY  208 (261)
Q Consensus       144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  208 (261)
                      |+|++.+ ++++++.|+.|++||++....++..+               . .|...|.+++|+|++++|++++.||.|++
T Consensus       194 ~~~~~~~-ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          194 WSPRYDY-ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT-AHNGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             ECSSCTT-EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC-SCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ECCCCCc-EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc-cccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            9999975 37788899999999998333344443               3 68899999999999999999999999999


Q ss_pred             eecccccccCC--------------------------------eeeeeecccccceeecCCCccceeeeeECCCCceEEE
Q psy6859         209 WSGYKQEFKFP--------------------------------KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       209 wd~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  256 (261)
                      ||+.+++....                                ....++..+++++..+.+|...|++++|+|++++|++
T Consensus       272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  351 (408)
T 4a11_B          272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS  351 (408)
T ss_dssp             EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence            99987542210                                1123455677888899999999999999999999999


Q ss_pred             eecCC
Q psy6859         257 ISMDR  261 (261)
Q Consensus       257 ~~~Dg  261 (261)
                      ++.||
T Consensus       352 ~~~dg  356 (408)
T 4a11_B          352 GSRDC  356 (408)
T ss_dssp             EETTS
T ss_pred             ECCCC
Confidence            99986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1e-37  Score=237.96  Aligned_cols=233  Identities=15%  Similarity=0.182  Sum_probs=198.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-eeeeEEee--ccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG-IEFVKHFR--SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~   76 (261)
                      +|.++|++++|+| +++|++++ ||.|++|++.+.. ......+.  .|...|.+++|+|++++|++++.|+.|++||+.
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~  127 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence            6999999999999 88999998 9999999998742 12333333  788999999999999999999999999999999


Q ss_pred             ccc--eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          77 NFD--MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        77 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      +++  ....+..+...+..+.+.++++.+++.    +.|+.|++||+++++.+..+..  +...+.+++|+|++..  ++
T Consensus       128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~v~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~--l~  199 (337)
T 1gxr_A          128 APTPRIKAELTSSAPACYALAISPDSKVCFSC----CSDGNIAVWDLHNQTLVRQFQG--HTDGASCIDISNDGTK--LW  199 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSE--EE
T ss_pred             CCCcceeeecccCCCceEEEEECCCCCEEEEE----eCCCcEEEEeCCCCceeeeeec--ccCceEEEEECCCCCE--EE
Confidence            877  455556666677788888888877766    8999999999999988777765  4557899999999975  88


Q ss_pred             EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                      +++.|+.|++||++ +++.+..+  .+...+.+++|+|++++|++++.|+.|++||+++               .+ ...
T Consensus       200 ~~~~dg~i~~~d~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~---------------~~-~~~  260 (337)
T 1gxr_A          200 TGGLDNTVRSWDLR-EGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK---------------PD-KYQ  260 (337)
T ss_dssp             EEETTSEEEEEETT-TTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------------SC-EEE
T ss_pred             EEecCCcEEEEECC-CCceEeee--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC---------------CC-eEE
Confidence            88899999999999 88888887  4788999999999999999999999999999864               22 345


Q ss_pred             cCCCccceeeeeECCCCceEEEeecCC
Q psy6859         235 FAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       235 ~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +..|...|.+++|+|++++|++++.||
T Consensus       261 ~~~~~~~v~~~~~~~~~~~l~~~~~dg  287 (337)
T 1gxr_A          261 LHLHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EcCCccceeEEEECCCCCEEEEecCCC
Confidence            677999999999999999999999886

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-38  Score=247.30  Aligned_cols=240  Identities=14%  Similarity=0.245  Sum_probs=201.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC--CceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEcc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~   76 (261)
                      +|...|++++|+| +++|++|+.||.|++|++..  .+.+....+.+|...|.+++|+|+ +++|++++.|+.|++||+.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            4788999999999 89999999999999999987  122577888899999999999998 8999999999999999998


Q ss_pred             ccc------eeeee---eccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC----cceEEEE
Q psy6859          77 NFD------MINMI---KLDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT----PLTVECI  142 (261)
Q Consensus        77 ~~~------~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~  142 (261)
                      +++      ....+   ..+...+..+.++++ +..++++    +.|+.|++||+++++.+..+..+..    ...+.++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  220 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA----GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV  220 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE----SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEE
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE----cCCCCEEEEECCCCCcceEEeccccccccCCceEEE
Confidence            876      33222   345566778888887 4555554    8999999999999988887765421    5679999


Q ss_pred             EEeCCCCceEEEEecCCC---eEEEEEccCCC-ccceeeccCcccCeEEEEEcC-CCCEEEEEcCCCeEEEeeccccccc
Q psy6859         143 HYLGDAIPTAAVSDQDSS---HVHIYDCKGNG-TPLHVLDRLHTKPVVLIKFNP-IYQVVVSVDKAGILEYWSGYKQEFK  217 (261)
Q Consensus       143 ~~~~~~~~~~~~~~~~d~---~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~  217 (261)
                      +|+|++.. ++++++.|+   .|++||++ .+ .++..+...|...|++++|+| ++++|++++.|+.|++||++     
T Consensus       221 ~~~~~~~~-~l~~~~~d~~~~~i~~~d~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~-----  293 (416)
T 2pm9_A          221 EWHPKNST-RVATATGSDNDPSILIWDLR-NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE-----  293 (416)
T ss_dssp             EECSSCTT-EEEEEECCSSSCCCCEEETT-STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS-----
T ss_pred             EECCCCCC-EEEEEECCCCCceEEEEeCC-CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC-----
Confidence            99999754 377788888   99999999 54 566666225899999999999 89999999999999999994     


Q ss_pred             CCeeeeeecccccceeecCCCccceeeeeECCCC-ceEEEeecCC
Q psy6859         218 FPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDG-NKFVTISMDR  261 (261)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~Dg  261 (261)
                                +++++..+.+|...|.+++|+|++ ++|++++.||
T Consensus       294 ----------~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~  328 (416)
T 2pm9_A          294 ----------SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN  328 (416)
T ss_dssp             ----------SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred             ----------CCccceeecCCCCceEEEEECCCCCCEEEEEecCC
Confidence                      467788888999999999999999 8999999886

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-37  Score=242.25  Aligned_cols=234  Identities=14%  Similarity=0.160  Sum_probs=200.7

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc-cc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI-NF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~-~~   78 (261)
                      +|...|++++|+| +++|++|+.||.|++|++.+.  +.+..+.+|...|.+++|+  ++++++++.||.|++||+. ..
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~  207 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN  207 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc
Confidence            3788999999999 899999999999999999887  7788889999999999994  5699999999999999998 45


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec-
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-  157 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (261)
                      ..+..+..+...+..+.+++++..++++    +.|+.|++||+++++.+..+..  +...+.+++|+|++..+ +++++ 
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~----~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l-l~~~~g  280 (401)
T 4aez_A          208 HQIGTLQGHSSEVCGLAWRSDGLQLASG----GNDNVVQIWDARSSIPKFTKTN--HNAAVKAVAWCPWQSNL-LATGGG  280 (401)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTCSSEEEEECC--CSSCCCEEEECTTSTTE-EEEECC
T ss_pred             ceeeEEcCCCCCeeEEEEcCCCCEEEEE----eCCCeEEEccCCCCCccEEecC--CcceEEEEEECCCCCCE-EEEecC
Confidence            6677777778888889999988877766    8999999999999888777654  45578999999988764 45543 


Q ss_pred             -CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEE--EcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859         158 -DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVS--VDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       158 -~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                       .|+.|++||++ +++++..+.  +...|.+++|+|++++|++  |+.||.|++||+.++             .......
T Consensus       281 s~d~~i~i~d~~-~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-------------~~~~~~~  344 (401)
T 4aez_A          281 TMDKQIHFWNAA-TGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-------------GLTKQVD  344 (401)
T ss_dssp             TTTCEEEEEETT-TCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-------------EEEEEEE
T ss_pred             CCCCEEEEEECC-CCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-------------cceeEEE
Confidence             79999999999 888888884  7788999999999999988  558999999998642             1233445


Q ss_pred             cCCCccceeeeeECCCCceEEEeecCC
Q psy6859         235 FAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       235 ~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +.+|...|.+++|+|+|++|++++.||
T Consensus       345 ~~~h~~~v~~~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          345 IPAHDTRVLYSALSPDGRILSTAASDE  371 (401)
T ss_dssp             EECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred             ecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            678999999999999999999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.5e-37  Score=238.82  Aligned_cols=200  Identities=16%  Similarity=0.257  Sum_probs=181.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      +|.+.|.+++|+| +..|++++.|++|++||++++  +.+..+.+|...|.+++|+|  ++++|++++.||.|++||+++
T Consensus       152 ~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~  229 (354)
T 2pbi_B          152 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESG--QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS  229 (354)
T ss_dssp             ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            5899999999999 889999999999999999987  78889999999999999987  568999999999999999999


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ++.+..+..+...+..+.++|++..++++    +.|++|++||++..+.+..+........+.+++|+|++..  +++++
T Consensus       230 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~----s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~--l~~g~  303 (354)
T 2pbi_B          230 GQCVQAFETHESDVNSVRYYPSGDAFASG----SDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL--LFAGY  303 (354)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE--EEEEE
T ss_pred             CcEEEEecCCCCCeEEEEEeCCCCEEEEE----eCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE--EEEEE
Confidence            99999988888888899999998877766    8999999999999877776665444457889999999975  88999


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      .|+.|++||+. +++.+..+. +|...|++++|+|++++|++++.|+.|++|+
T Consensus       304 ~d~~i~vwd~~-~~~~~~~l~-~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          304 NDYTINVWDVL-KGSRVSILF-GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTSCEEEEETT-TCSEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCcEEEEECC-CCceEEEEE-CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999998 888888887 9999999999999999999999999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1e-37  Score=243.36  Aligned_cols=235  Identities=16%  Similarity=0.193  Sum_probs=197.7

Q ss_pred             CCCCCeEEEEEcCC--------CeEEEecCCCeEEEEeccCCceee-----eEEeecc-----ccceeEEEEe----eCC
Q psy6859           1 MHRSPITHVVVTKT--------DFVITASNDGHIKFWKKQEEGIEF-----VKHFRSH-----LGVIHSICTN----YNG   58 (261)
Q Consensus         1 gH~~~v~~~~~~~~--------~~l~s~~~d~~i~iw~~~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~   58 (261)
                      +|..+|++++|+|.        ++|++++.|+.|++|++.+.  +.     ...+..|     ...|.+++|+    |++
T Consensus        60 ~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  137 (397)
T 1sq9_A           60 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE--DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL  137 (397)
T ss_dssp             CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEEC--TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred             cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCC--cccccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence            68999999999985        79999999999999999876  33     6777778     5899999999    999


Q ss_pred             CE-EEEEeCCCcEEEEEccc------cceee-----eee-------ccCcceeEEEEeecCCceeeeeeecCCCCeEEEE
Q psy6859          59 TL-LCTVASDKAMKVFDVIN------FDMIN-----MIK-------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIY  119 (261)
Q Consensus        59 ~~-l~s~~~dg~v~~wd~~~------~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~  119 (261)
                      ++ |++++.||.|++||+.+      ++.+.     .+.       .+...+..+.+++++ .+++.    +.|+.|++|
T Consensus       138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~----~~dg~i~i~  212 (397)
T 1sq9_A          138 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG----FNNGTVQIS  212 (397)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE----CTTSEEEEE
T ss_pred             ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE----eCCCcEEEE
Confidence            99 99999999999999998      66665     553       245567778888877 65555    899999999


Q ss_pred             EcCCCceeeEEee-cCC---cceEEEEEEeCCCCceEEEEecCC---CeEEEEEccCCCccceeeccC------------
Q psy6859         120 DCKGNDMINMIKL-DFT---PLTVECIHYLGDAIPTAAVSDQDS---SHVHIYDCKGNGTPLHVLDRL------------  180 (261)
Q Consensus       120 d~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~~~------------  180 (261)
                      |+++++.+..+.. ..+   ...+.+++|+|++..  +++++.|   +.|++||++ +++++..+. .            
T Consensus       213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~--l~~~~~d~~~g~i~i~d~~-~~~~~~~~~-~~~~~~~~~~~~~  288 (397)
T 1sq9_A          213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL--LAIAHDSNSFGCITLYETE-FGERIGSLS-VPTHSSQASLGEF  288 (397)
T ss_dssp             ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE--EEEEEEETTEEEEEEEETT-TCCEEEEEC-BC--------CCB
T ss_pred             ECCCCceeEEEeccccccccCCccceEEECCCCCE--EEEEecCCCCceEEEEECC-CCcccceec-cCccccccccccc
Confidence            9999988888775 112   457899999999875  7788888   999999999 888888887 7            


Q ss_pred             -cccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC------CC---------------
Q psy6859         181 -HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA------KN---------------  238 (261)
Q Consensus       181 -~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------  238 (261)
                       |...|.+++|+|++++|++++.||.|++||+++               ++.+..+.      +|               
T Consensus       289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  353 (397)
T 1sq9_A          289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT---------------KERITTLNMHCDDIEIEEDILAVDEHGDSLA  353 (397)
T ss_dssp             SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT---------------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC---------------CceeEEEecccCcccchhhhhcccccccccc
Confidence             999999999999999999999999999999954               45555565      56               


Q ss_pred             ccceeeeeECCCC----------ceEEEeecCC
Q psy6859         239 KTYPSGLSFSPDG----------NKFVTISMDR  261 (261)
Q Consensus       239 ~~~v~~~~~s~~~----------~~l~s~~~Dg  261 (261)
                      ...|++++|+|++          ++|++++.||
T Consensus       354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg  386 (397)
T 1sq9_A          354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR  386 (397)
T ss_dssp             SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred             CCceeEEEeccccccccccccccceEEEecCCC
Confidence            8999999999998          7999999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-36  Score=239.34  Aligned_cols=235  Identities=15%  Similarity=0.211  Sum_probs=199.2

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-   78 (261)
                      +|.+.|++|+|+| +++|++|+.||+|+|||+.++  +.+..+.+|...+.++.++  +.++++++.|+.+++||.... 
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~  220 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE  220 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC--cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc
Confidence            5788999999999 999999999999999999987  8889999999999988775  569999999999999998764 


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee--EEeecCCcceEEEEEEeCCCCceEEE-E
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN--MIKLDFTPLTVECIHYLGDAIPTAAV-S  155 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~  155 (261)
                      ..+..+..+........+.+.+..+++.    +.|+.+++||..+++...  ......+...+.+++|+|.....++. +
T Consensus       221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~----~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~  296 (420)
T 4gga_A          221 HHVATLSGHSQEVCGLRWAPDGRHLASG----GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG  296 (420)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEE----ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE
T ss_pred             eeeEEecccccceeeeeecCCCCeeeee----eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe
Confidence            4556677777788888888888877776    899999999998765321  12233455689999999988765443 4


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc--CCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD--KAGILEYWSGYKQEFKFPKCVHFESKLDTDLF  233 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  233 (261)
                      |+.|+.|++||+. +++++..+.  +...+.++.|+|+++.+++++  .|+.|++||+.               +++++.
T Consensus       297 gs~D~~I~iwd~~-t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~---------------~~~~v~  358 (420)
T 4gga_A          297 GTSDRHIRIWNVC-SGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP---------------TMAKVA  358 (420)
T ss_dssp             CTTTCEEEEEETT-TTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT---------------TCCEEE
T ss_pred             ecCCCEEEEEeCC-ccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEECC---------------CCcEEE
Confidence            6789999999999 888888885  567799999999999887654  79999999994               478889


Q ss_pred             ecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         234 EFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       234 ~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+.+|.+.|++++|+|||++|+|||.||
T Consensus       359 ~l~gH~~~V~~l~~spdg~~l~S~s~D~  386 (420)
T 4gga_A          359 ELKGHTSRVLSLTMSPDGATVASAAADE  386 (420)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence            9999999999999999999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.8e-37  Score=262.22  Aligned_cols=235  Identities=12%  Similarity=0.145  Sum_probs=208.8

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.+.|++++|+| +.+|++++.||.|++||+.++  +.+..+.+|.++|.+++|+|++++|++++.||.|++||+.+++
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~   88 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE   88 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            6899999999999 999999999999999999887  7888999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeC-CCCceEEEEec
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLG-DAIPTAAVSDQ  157 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  157 (261)
                      .+..+..+...+..+.+++++..++++    +.|+.|++||++++ .....+..  +...+.+++|+| ++..  +++++
T Consensus        89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~vw~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~--l~~~~  160 (814)
T 3mkq_A           89 KVVDFEAHPDYIRSIAVHPTKPYVLSG----SDDLTVKLWNWENNWALEQTFEG--HEHFVMCVAFNPKDPST--FASGC  160 (814)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEE----ETTSEEEEEEGGGTSEEEEEEEC--CSSCEEEEEEETTEEEE--EEEEE
T ss_pred             EEEEEecCCCCEEEEEEeCCCCEEEEE----cCCCEEEEEECCCCceEEEEEcC--CCCcEEEEEEEcCCCCE--EEEEe
Confidence            999988888889999999999877766    89999999999887 44555554  455799999999 6643  88889


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcC--CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP--IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF  235 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
                      .|+.|++||+. .+.....+...+...+..++|+|  ++++|++++.||.|++||+++               ++.+..+
T Consensus       161 ~dg~v~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------~~~~~~~  224 (814)
T 3mkq_A          161 LDRTVKVWSLG-QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---------------KSCVATL  224 (814)
T ss_dssp             TTSEEEEEETT-CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT---------------TEEEEEE
T ss_pred             CCCeEEEEECC-CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC---------------CcEEEEE
Confidence            99999999998 77777777634458899999999  999999999999999999853               6677888


Q ss_pred             CCCccceeeeeECCCCceEEEeecCC
Q psy6859         236 AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       236 ~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+|...|.+++|+|++++|++++.||
T Consensus       225 ~~~~~~v~~~~~~~~~~~l~~~~~dg  250 (814)
T 3mkq_A          225 EGHMSNVSFAVFHPTLPIIISGSEDG  250 (814)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            88999999999999999999999886

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.7e-38  Score=244.97  Aligned_cols=237  Identities=16%  Similarity=0.245  Sum_probs=197.1

Q ss_pred             CCCCeEEEEEcC-C----CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEc
Q psy6859           2 HRSPITHVVVTK-T----DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         2 H~~~v~~~~~~~-~----~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~   75 (261)
                      |...|++++|+| +    .+|++|+.||.|++||+.+.  +.+..+.+|...|.+++|+| ++++|++++.||.|++||+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~  145 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM--QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI  145 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC--CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc--eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence            678899999998 3    38999999999999999987  77888999999999999999 8999999999999999999


Q ss_pred             cccceeeee---eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee--------------------
Q psy6859          76 INFDMINMI---KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL--------------------  132 (261)
Q Consensus        76 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~--------------------  132 (261)
                      .+++.+..+   ..+...+..+.+++++..++++    +.|+.|++||+++++....+..                    
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (366)
T 3k26_A          146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC----GMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHF  221 (366)
T ss_dssp             TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEE----ETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECC
T ss_pred             ecCeEEEEecccccccCceeEEEECCCCCEEEEe----cCCCCEEEEECCCCccccccceeEEecCCCCcccccceeecc
Confidence            999888887   4566778888888888877766    8999999999998755433221                    


Q ss_pred             ------cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc--------------ceeeccCcccCeEEEEEcC
Q psy6859         133 ------DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP--------------LHVLDRLHTKPVVLIKFNP  192 (261)
Q Consensus       133 ------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--------------~~~~~~~~~~~v~~~~~~~  192 (261)
                            ..+...+.+++|+++    ++++++.|+.|++||++ ....              +..+. .|...|++++|+|
T Consensus       222 ~~~~~~~~~~~~v~~~~~~~~----~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~  295 (366)
T 3k26_A          222 PDFSTRDIHRNYVDCVRWLGD----LILSKSCENAIVCWKPG-KMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRFSM  295 (366)
T ss_dssp             CSEEECSSCSSCCCEEEEETT----EEEEECSSSEEEEEEES-STTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCCEE
T ss_pred             CccccccCCcceEEEEEEcCC----EEEEEecCCEEEEEeCC-CccccccccccCCcchheecccc-ccCCcEEEEEEcC
Confidence                  124557889999833    28899999999999998 5433              56665 7888999999999


Q ss_pred             C--CCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC--ccceeeeeECCCCceEEEeecCC
Q psy6859         193 I--YQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN--KTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       193 ~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +  +++|++++.||.|++||+.+++.           .......+.+|  ...|++++|+|++++|++++.||
T Consensus       296 ~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  357 (366)
T 3k26_A          296 DFWQKMLALGNQVGKLYVWDLEVEDP-----------HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA  357 (366)
T ss_dssp             CTTSSEEEEECTTSCEEEEECCSSSG-----------GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCcEEEEEecCCcEEEEECCCCCC-----------ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence            9  99999999999999999965311           11233466666  79999999999999999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-37  Score=241.77  Aligned_cols=231  Identities=16%  Similarity=0.184  Sum_probs=199.0

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|.+.|++++|+| +++|++|+.||.|++|+.. .  +....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  182 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-G--ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT  182 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEETT-S--CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-C--CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc
Confidence            3788999999999 8999999999999999943 3  6777888999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcc---------------eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEE
Q psy6859          80 MINMIKLDFTP---------------LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHY  144 (261)
Q Consensus        80 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  144 (261)
                      .+..+..+...               ...+.+.+++ .+++.    +.++.|++||+++++.+..+..  +...+.+++|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~g~i~~~d~~~~~~~~~~~~--~~~~i~~~~~  255 (425)
T 1r5m_A          183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIP----GPKGAIFVYQITEKTPTGKLIG--HHGPISVLEF  255 (425)
T ss_dssp             EEEEECCC---------------CCCBSCCEEEETT-EEEEE----CGGGCEEEEETTCSSCSEEECC--CSSCEEEEEE
T ss_pred             EEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEE----cCCCeEEEEEcCCCceeeeecc--CCCceEEEEE
Confidence            88887766554               5556666654 34444    8899999999999888777764  4557899999


Q ss_pred             eCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeee
Q psy6859         145 LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHF  224 (261)
Q Consensus       145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  224 (261)
                      +|++..  +++++.|+.|++||++ .++++..+. .|...|.+++|+|++ +|++++.|+.|++||+++           
T Consensus       256 ~~~~~~--l~~~~~d~~i~i~d~~-~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-----------  319 (425)
T 1r5m_A          256 NDTNKL--LLSASDDGTLRIWHGG-NGNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-----------  319 (425)
T ss_dssp             ETTTTE--EEEEETTSCEEEECSS-SBSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT-----------
T ss_pred             CCCCCE--EEEEcCCCEEEEEECC-CCccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC-----------
Confidence            999975  8888899999999999 888888887 899999999999999 999999999999999953           


Q ss_pred             ecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         225 ESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       225 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                          ++.+..+..|...|.+++|+|++++|++++.||
T Consensus       320 ----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  352 (425)
T 1r5m_A          320 ----NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG  352 (425)
T ss_dssp             ----TEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             ----CcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence                667778888999999999999999999999886

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1e-37  Score=239.82  Aligned_cols=250  Identities=15%  Similarity=0.162  Sum_probs=194.8

Q ss_pred             CCCCCeEEEEEcC-C---CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEE------eeCCCEEEEEeCCCcE
Q psy6859           1 MHRSPITHVVVTK-T---DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICT------NYNGTLLCTVASDKAM   70 (261)
Q Consensus         1 gH~~~v~~~~~~~-~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~s~~~dg~v   70 (261)
                      +|..+|++++|+| +   ++|++|+.||.|++|++.+.. .....+.+|...|.++.|      +|++++|++++.||.|
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i  141 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV  141 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence            4889999999999 3   899999999999999998762 277888999999999955      6789999999999999


Q ss_pred             EEEEccccc-eeeeeeccCc----ceeEEE----EeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEE
Q psy6859          71 KVFDVINFD-MINMIKLDFT----PLTVEC----IHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVEC  141 (261)
Q Consensus        71 ~~wd~~~~~-~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  141 (261)
                      ++||+.+++ .+..+..+..    ....+.    +++++..+++.    +.|+.|++||+++++......   +...+.+
T Consensus       142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~----~~d~~i~i~d~~~~~~~~~~~---~~~~v~~  214 (357)
T 3i2n_A          142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG----YDNGDIKLFDLRNMALRWETN---IKNGVCS  214 (357)
T ss_dssp             EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE----ETTSEEEEEETTTTEEEEEEE---CSSCEEE
T ss_pred             EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE----ccCCeEEEEECccCceeeecC---CCCceEE
Confidence            999999876 6666654332    344444    45677766665    889999999999987754433   3457999


Q ss_pred             EEEeC---CCCceEEEEecCCCeEEEEEccCCCccceeec----cCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeeccc
Q psy6859         142 IHYLG---DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD----RLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       142 ~~~~~---~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  213 (261)
                      +.|+|   ++..  +++++.|+.|++||++ +++++..+.    ..|...|++++|+|+++ +|++++.||.|++||++.
T Consensus       215 ~~~~~~~~~~~~--l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          215 LEFDRKDISMNK--LVATSLEGKFHVFDMR-TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEESCSSSSCCE--EEEEESTTEEEEEEEE-EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             EEcCCCCCCCCE--EEEECCCCeEEEEeCc-CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            99999   7765  7888899999999998 666655442    27899999999999998 899999999999999975


Q ss_pred             ccccCC----eeeeeecccccceeecCCCccceeeeeECCCCceEE-EeecCC
Q psy6859         214 QEFKFP----KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV-TISMDR  261 (261)
Q Consensus       214 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~Dg  261 (261)
                      ......    ..........+.+..+.+|...|++++|+|++++|+ +++.||
T Consensus       292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~  344 (357)
T 3i2n_A          292 PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ  344 (357)
T ss_dssp             CSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             CcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence            322110    000000011246777888999999999999999998 798886

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-37  Score=244.75  Aligned_cols=236  Identities=11%  Similarity=0.164  Sum_probs=186.9

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc---------eeeeEEeeccc------------cceeEEEEeeCC-
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG---------IEFVKHFRSHL------------GVIHSICTNYNG-   58 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~---------~~~~~~~~~~~------------~~v~~~~~~~~~-   58 (261)
                      |.+.|++++|+| +++||+|+.||.|+||++.+..         .+....+.+|.            +.|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            568999999999 9999999999999999998652         12577888998            889999999998 


Q ss_pred             -CEEEEEeCCCcEEEEEccccceee---------------------------------------e-eeccCcceeEEEEe
Q psy6859          59 -TLLCTVASDKAMKVFDVINFDMIN---------------------------------------M-IKLDFTPLTVECIH   97 (261)
Q Consensus        59 -~~l~s~~~dg~v~~wd~~~~~~~~---------------------------------------~-~~~~~~~~~~~~~~   97 (261)
                       .+|++++.|+.|++||+.+++...                                       . ...+...+..+.++
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             799999999999999998754321                                       1 13355667788888


Q ss_pred             ecCCceeeeeeecCCCCeEEEEEcCC-CceeeEE-----eecCCcceEEEEEEeCCC-CceEEEEecCCCeEEEEEccCC
Q psy6859          98 YLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMI-----KLDFTPLTVECIHYLGDA-IPTAAVSDQDSSHVHIYDCKGN  170 (261)
Q Consensus        98 ~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~  170 (261)
                      +++..+++    + .|+.|++||+++ ++.+..+     ....+...+.+++|+|++ ..  +++++.|+.|++||++ +
T Consensus       187 ~~~~~l~s----~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~--l~s~~~dg~i~iwd~~-~  258 (447)
T 3dw8_B          187 SDYETYLS----A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT--FVYSSSKGTIRLCDMR-A  258 (447)
T ss_dssp             TTSSEEEE----E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE--EEEEETTSCEEEEETT-T
T ss_pred             CCCCEEEE----e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE--EEEEeCCCeEEEEECc-C
Confidence            88776554    3 699999999994 4444433     233456689999999998 54  8889999999999998 7


Q ss_pred             Ccc----ceeeccCccc------------CeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859         171 GTP----LHVLDRLHTK------------PVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       171 ~~~----~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                      ++.    +..+. .|..            .|.+++|+|++++|++++. +.|++||++.              .++++..
T Consensus       259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~--------------~~~~~~~  322 (447)
T 3dw8_B          259 SALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM--------------ENRPVET  322 (447)
T ss_dssp             CSSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC--------------CSSCSCC
T ss_pred             CccccceeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC--------------Cccccce
Confidence            665    67776 6665            8999999999999999998 9999999953              1456666


Q ss_pred             cCCCccc---------------eeeeeECCCCceEEEeecCC
Q psy6859         235 FAKNKTY---------------PSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       235 ~~~~~~~---------------v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +.+|...               +..++|+|++++|++++.||
T Consensus       323 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg  364 (447)
T 3dw8_B          323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN  364 (447)
T ss_dssp             EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT
T ss_pred             eeccccccccccccccccccccceEEEECCCCCEEEEeccCC
Confidence            6666532               23499999999999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.7e-37  Score=242.03  Aligned_cols=252  Identities=14%  Similarity=0.186  Sum_probs=199.0

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccC--------CceeeeEEeeccccceeEEEEeeCCC-EEEEEeCCCc
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQE--------EGIEFVKHFRSHLGVIHSICTNYNGT-LLCTVASDKA   69 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~   69 (261)
                      +|.+.|++++|+|  +.+|++++.||.|++|++..        ........+.+|...|.+++|+|+++ +|++++.||.
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  205 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT  205 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence            4889999999999  46899999999999999976        11367788899999999999999988 9999999999


Q ss_pred             EEEEEccccce-------eeeeeccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCC---ceeeEEeecCCcce
Q psy6859          70 MKVFDVINFDM-------INMIKLDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGN---DMINMIKLDFTPLT  138 (261)
Q Consensus        70 v~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~  138 (261)
                      |++||+.++..       ...+..+...+..+.+++. +..++++    +.|+.|++||+++.   +.+..+..  +...
T Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~----~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~  279 (430)
T 2xyi_A          206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV----ADDQKLMIWDTRNNNTSKPSHTVDA--HTAE  279 (430)
T ss_dssp             EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE----ETTSEEEEEETTCSCSSSCSEEEEC--CSSC
T ss_pred             EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE----eCCCeEEEEECCCCCCCcceeEeec--CCCC
Confidence            99999987322       3344456666778888884 4444444    88999999999987   45555543  4567


Q ss_pred             EEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeeccccccc
Q psy6859         139 VECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFK  217 (261)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~  217 (261)
                      +.+++|+|++.+ ++++|+.|+.|++||++....++..+. .|...|++++|+|+++ +|++++.|+.|++||+......
T Consensus       280 v~~i~~~p~~~~-~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~  357 (430)
T 2xyi_A          280 VNCLSFNPYSEF-ILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  357 (430)
T ss_dssp             EEEEEECSSCTT-EEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred             eEEEEeCCCCCC-EEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence            999999999875 377888999999999994367888887 8999999999999996 6899999999999999652110


Q ss_pred             CCeeeeeecccccceeecCCCccceeeeeECCCCc-eEEEeecCC
Q psy6859         218 FPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGN-KFVTISMDR  261 (261)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~Dg  261 (261)
                      .... .......+.+..+.+|...|++++|+|+++ +|++++.||
T Consensus       358 ~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg  401 (430)
T 2xyi_A          358 QSTE-DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN  401 (430)
T ss_dssp             CCHH-HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             cCcc-ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence            0000 000011356777888999999999999999 899999886

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9e-37  Score=235.91  Aligned_cols=249  Identities=12%  Similarity=0.072  Sum_probs=197.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|...|++++|+| +++|++++.|+.|++|++.+........+..|...|.+++|+|++++|++++.|+.|++||+..++
T Consensus        50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~  129 (372)
T 1k8k_C           50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN  129 (372)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred             CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence            6899999999999 899999999999999999887434455557799999999999999999999999999999998876


Q ss_pred             e---eeee-eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC------------------CCceeeEEeecCCcc
Q psy6859          80 M---INMI-KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK------------------GNDMINMIKLDFTPL  137 (261)
Q Consensus        80 ~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~~  137 (261)
                      .   ...+ ..+...+..+.+++++..+++.    +.|+.|++||++                  .++.+..+..  +..
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  203 (372)
T 1k8k_C          130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG----SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS--SCG  203 (372)
T ss_dssp             TEEEEEEECTTCCSCEEEEEECTTSSEEEEE----ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC--CSS
T ss_pred             cceeeeeeecccCCCeeEEEEcCCCCEEEEE----cCCCCEEEEEcccccccccccccccccccchhhheEecCC--CCC
Confidence            3   2233 3345667888888888777666    899999999964                  4555555543  455


Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc--cc
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK--QE  215 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~  215 (261)
                      .+.++.|+|++..  +++++.|+.|++||++ +++++..+. .|..+|.+++|+|++++|+++ .|+.|++|++.+  +.
T Consensus       204 ~v~~~~~~~~~~~--l~~~~~d~~i~i~d~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~  278 (372)
T 1k8k_C          204 WVHGVCFSANGSR--VAWVSHDSTVCLADAD-KKMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK  278 (372)
T ss_dssp             CEEEEEECSSSSE--EEEEETTTEEEEEEGG-GTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE
T ss_pred             eEEEEEECCCCCE--EEEEeCCCEEEEEECC-CCceeEEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce
Confidence            7999999999975  8888999999999999 888999998 899999999999999998888 899999999976  42


Q ss_pred             ccCCeeee---------------e---ecccccce------eec-CCCccceeeeeEC-CCC---ceEEEeecCC
Q psy6859         216 FKFPKCVH---------------F---ESKLDTDL------FEF-AKNKTYPSGLSFS-PDG---NKFVTISMDR  261 (261)
Q Consensus       216 ~~~~~~~~---------------~---~~~~~~~~------~~~-~~~~~~v~~~~~s-~~~---~~l~s~~~Dg  261 (261)
                      +.......               +   + ..++..      ..+ .+|...|++++|+ ++|   ++|++++.||
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg  352 (372)
T 1k8k_C          279 LSFGGRLDVPKQSSQRGLTARERFQNLD-KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG  352 (372)
T ss_dssp             EEECCCCCCC--------CHHHHHHHCC-CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred             EEEeeccCccccchhhhcchhhhhhhcc-cccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCC
Confidence            21110000               0   0 011111      233 4899999999966 677   9999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.5e-37  Score=241.44  Aligned_cols=245  Identities=11%  Similarity=0.118  Sum_probs=191.8

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|.+.|++++|+| +++|++|+.|+.|++||+.+.  +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            6999999999999 899999999999999999987  6778889999999999999999999999999999999999999


Q ss_pred             eeeeeecc---CcceeEEEE---------------------eecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC
Q psy6859          80 MINMIKLD---FTPLTVECI---------------------HYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT  135 (261)
Q Consensus        80 ~~~~~~~~---~~~~~~~~~---------------------~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~  135 (261)
                      .+..+..+   ...+....+                     ++++..++++    +.|+.|++||+++++.+..+.. .+
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~-~~  289 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG----HVSGVITVHNVFSKEQTIQLPS-KF  289 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE----ETTSCEEEEETTTCCEEEEECC-TT
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE----cCCCeEEEEECCCCceeEEccc-cc
Confidence            88887642   223333333                     3445555444    8999999999999887776654 24


Q ss_pred             cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC-ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         136 PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG-TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      ...+.+++|+|++.. ++++++.||.|++||++ ++ .++..+...|...|.++.+ |++++|++++.|+.|++|++...
T Consensus       290 ~~~v~~~~~~~~~~~-~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          290 TCSCNSLTVDGNNAN-YIYAGYENGMLAQWDLR-SPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             SSCEEEEEECSSCTT-EEEEEETTSEEEEEETT-CTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred             CCCceeEEEeCCCCC-EEEEEeCCCeEEEEEcC-CCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence            568999999999873 38888999999999998 54 5577776237778888855 57889999999999999998652


Q ss_pred             cccCCeeeeeecccccceeecCCCccceeeeeECCCCc---eEEEeecCC
Q psy6859         215 EFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGN---KFVTISMDR  261 (261)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~Dg  261 (261)
                      ......      ........+..|...|.+++|+|+++   .|++++.+|
T Consensus       367 ~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g  410 (420)
T 3vl1_A          367 ESERPA------IEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN  410 (420)
T ss_dssp             TCCSCE------ECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred             CCCccc------eeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence            110000      00112233557889999999999999   555555543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-36  Score=226.28  Aligned_cols=229  Identities=16%  Similarity=0.199  Sum_probs=186.2

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-   78 (261)
                      ||.+.|++++| | +++|++|+.||.|++|++.+.  +....+..|...|.+++|+|+++++++++.||.+++|++... 
T Consensus        16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~   92 (313)
T 3odt_A           16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS   92 (313)
T ss_dssp             CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS--EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT
T ss_pred             CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC--EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC
Confidence            79999999999 7 899999999999999999876  777888889999999999999999999999999999998653 


Q ss_pred             --ceeeeee--------------------------------------ccCcceeEEEEee-cCCceeeeeeecCCCCeEE
Q psy6859          79 --DMINMIK--------------------------------------LDFTPLTVECIHY-LGDAIPTAAVSDQDSSRVH  117 (261)
Q Consensus        79 --~~~~~~~--------------------------------------~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~  117 (261)
                        +.+..+.                                      .+..++..+.+.+ +++.++++    +.|+.|+
T Consensus        93 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~d~~i~  168 (313)
T 3odt_A           93 GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTA----SADKTIK  168 (313)
T ss_dssp             TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEE----ETTSCEE
T ss_pred             CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEE----ECCCCEE
Confidence              2222221                                      1222333334444 45544444    8899999


Q ss_pred             EEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE
Q psy6859         118 IYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV  197 (261)
Q Consensus       118 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  197 (261)
                      +||  ..+....+... +...+.+++++|++.   +++++.|+.|++||++ +++++..+. .|...|++++|+|++ .|
T Consensus       169 i~d--~~~~~~~~~~~-~~~~i~~~~~~~~~~---~~~~~~dg~i~i~d~~-~~~~~~~~~-~~~~~i~~~~~~~~~-~l  239 (313)
T 3odt_A          169 LWQ--NDKVIKTFSGI-HNDVVRHLAVVDDGH---FISCSNDGLIKLVDMH-TGDVLRTYE-GHESFVYCIKLLPNG-DI  239 (313)
T ss_dssp             EEE--TTEEEEEECSS-CSSCEEEEEEEETTE---EEEEETTSEEEEEETT-TCCEEEEEE-CCSSCEEEEEECTTS-CE
T ss_pred             EEe--cCceEEEEecc-CcccEEEEEEcCCCe---EEEccCCCeEEEEECC-chhhhhhhh-cCCceEEEEEEecCC-CE
Confidence            999  34444554432 456899999999986   7788899999999999 889999997 899999999999999 58


Q ss_pred             EEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         198 VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       198 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++++.||.|++||+++               ++.+..+..|...|.+++|+|+++ +++++.||
T Consensus       240 ~~~~~dg~v~iwd~~~---------------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg  287 (313)
T 3odt_A          240 VSCGEDRTVRIWSKEN---------------GSLKQVITLPAISIWSVDCMSNGD-IIVGSSDN  287 (313)
T ss_dssp             EEEETTSEEEEECTTT---------------CCEEEEEECSSSCEEEEEECTTSC-EEEEETTS
T ss_pred             EEEecCCEEEEEECCC---------------CceeEEEeccCceEEEEEEccCCC-EEEEeCCC
Confidence            8999999999999954               677888888999999999999998 55677775

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.9e-37  Score=234.90  Aligned_cols=238  Identities=11%  Similarity=0.014  Sum_probs=191.7

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-eeeeEEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEc-c
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG-IEFVKHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDV-I   76 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~-~   76 (261)
                      +|.+.|++++|+| +++|++++.|+.|++|++.+.. ......+.+|...|.+++|+|+++ +|++++.||.|++||+ .
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~   88 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence            6999999999999 8999999999999999998753 123455568999999999999999 9999999999999999 7


Q ss_pred             ccceeeeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC---------CceeeEEeecCCcceEEEEEEe
Q psy6859          77 NFDMINMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG---------NDMINMIKLDFTPLTVECIHYL  145 (261)
Q Consensus        77 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~  145 (261)
                      +++. ..+..  +...+..+.+.+ ++.++++    +.|+.|++||+++         ++++..+.   ++..+.+++|+
T Consensus        89 ~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~  159 (342)
T 1yfq_A           89 SPSF-QALTNNEANLGICRICKYG-DDKLIAA----SWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFTMDTN  159 (342)
T ss_dssp             SSSE-EECBSCCCCSCEEEEEEET-TTEEEEE----ETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEEEEEC
T ss_pred             CCce-EeccccCCCCceEEEEeCC-CCEEEEE----cCCCeEEEEcccccccccccccCCeeeEEe---eCCceEEEEec
Confidence            7655 45555  666777788887 7766665    8999999999987         65555554   45688999999


Q ss_pred             CCCCceEEEEecCCCeEEEEEccCC-Ccc-ceeeccCcccCeEEEEEcC-CCCEEEEEcCCCeEEEeecccccccCCeee
Q psy6859         146 GDAIPTAAVSDQDSSHVHIYDCKGN-GTP-LHVLDRLHTKPVVLIKFNP-IYQVVVSVDKAGILEYWSGYKQEFKFPKCV  222 (261)
Q Consensus       146 ~~~~~~~~~~~~~d~~i~i~d~~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  222 (261)
                      |+.    +++++.++.|++||++ . ... .......|...+.+++|+| ++++|++++.||.|++|+++.....     
T Consensus       160 ~~~----l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-----  229 (342)
T 1yfq_A          160 SSR----LIVGMNNSQVQWFRLP-LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD-----  229 (342)
T ss_dssp             SSE----EEEEESTTEEEEEESS-CCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS-----
T ss_pred             CCc----EEEEeCCCeEEEEECC-ccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc-----
Confidence            988    7788889999999998 5 332 2222226888999999999 9999999999999999998642000     


Q ss_pred             eeecccccceeecCCCcc---------ceeeeeECCCCceEEEeecCC
Q psy6859         223 HFESKLDTDLFEFAKNKT---------YPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                          ...+....+..|..         .|.+++|+|++++|++++.||
T Consensus       230 ----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  273 (342)
T 1yfq_A          230 ----YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             ----TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             ----cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence                00245555555544         999999999999999999886

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.1e-37  Score=243.30  Aligned_cols=232  Identities=14%  Similarity=0.095  Sum_probs=193.6

Q ss_pred             eEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859           6 ITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         6 v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      +....|+| +++|++|+.||.|++|++.+.  +....+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus       100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  177 (420)
T 3vl1_A          100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFN--LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL  177 (420)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEECTTSC--EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred             eEEEEEecCCCEEEEEECCCCEEEEeCCCc--ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence            34446778 889999999999999999876  777778899999999999999999999999999999999999999988


Q ss_pred             eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC-CcceEEEEEE-------------------
Q psy6859          85 KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF-TPLTVECIHY-------------------  144 (261)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~-------------------  144 (261)
                      ..+..++..+.+++++..++++    +.|+.|++||+++++.+..+..+. +...+.++.+                   
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~----~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~  253 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSA----SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL  253 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEE----ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred             cCCCCcEEEEEEcCCCCEEEEE----cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccce
Confidence            8888889999999998877766    899999999999998888876532 2334444444                   


Q ss_pred             --eCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCee
Q psy6859         145 --LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKC  221 (261)
Q Consensus       145 --~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  221 (261)
                        +|++..  +++++.||.|++||++ +++.+..+...|...|++++|+|+++ +|++++.||.|++||++++       
T Consensus       254 ~~s~~~~~--l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~-------  323 (420)
T 3vl1_A          254 EFGTYGKY--VIAGHVSGVITVHNVF-SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP-------  323 (420)
T ss_dssp             CSSCTTEE--EEEEETTSCEEEEETT-TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-------
T ss_pred             EEcCCCCE--EEEEcCCCeEEEEECC-CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC-------
Confidence              566654  8889999999999999 77777666536889999999999999 9999999999999999642       


Q ss_pred             eeeecccccceeecCC-CccceeeeeECCCCceEEEeecCC
Q psy6859         222 VHFESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       222 ~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                             ..++..+.. |...|.++. .|++++|++++.||
T Consensus       324 -------~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~  356 (420)
T 3vl1_A          324 -------ECPVGEFLINEGTPINNVY-FAAGALFVSSGFDT  356 (420)
T ss_dssp             -------TSCSEEEEESTTSCEEEEE-EETTEEEEEETTTE
T ss_pred             -------cCchhhhhccCCCCceEEE-eCCCCEEEEecCCc
Confidence                   234556665 667777775 45788999999885

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.5e-37  Score=236.87  Aligned_cols=236  Identities=11%  Similarity=0.079  Sum_probs=189.5

Q ss_pred             CCCCCeEEEEEcC-CC-eEEEecC---CCeEEEEeccCCceeeeEEeeccccceeEEEEeeC---CCEEEEEeCCCcEEE
Q psy6859           1 MHRSPITHVVVTK-TD-FVITASN---DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN---GTLLCTVASDKAMKV   72 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~-~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~v~~   72 (261)
                      ||.+.|++++|+| +. ++++|+.   |+.|++|++.++....... .+|...|.+++|+|+   +++|++++.||.|++
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i   94 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI   94 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence            5999999999999 65 5566766   9999999999864333333 368999999999998   699999999999999


Q ss_pred             EEccccc-eeeeeeccCcceeEEEE------eecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCC--cceEEEE
Q psy6859          73 FDVINFD-MINMIKLDFTPLTVECI------HYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFT--PLTVECI  142 (261)
Q Consensus        73 wd~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~--~~~~~~~  142 (261)
                      ||+.+++ .+..+..+...+..+.+      +++++.++++    +.|+.|++||+++++ .+..+..+..  ...+.++
T Consensus        95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~----~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTG----SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEE----ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEE----eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            9999887 77777777777766644      4566666665    899999999999886 6666654332  3367888


Q ss_pred             E----EeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcC---CCCEEEEEcCCCeEEEeeccccc
Q psy6859         143 H----YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP---IYQVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       143 ~----~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~  215 (261)
                      .    |+|++..  +++++.|+.|++||++ +++.....  .|...|.+++|+|   ++++|++++.||.|++||++++ 
T Consensus       171 ~~~~~~~~~~~~--l~~~~~d~~i~i~d~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-  244 (357)
T 3i2n_A          171 AFGNAYNQEERV--VCAGYDNGDIKLFDLR-NMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ-  244 (357)
T ss_dssp             EEECCCC-CCCE--EEEEETTSEEEEEETT-TTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-
T ss_pred             EEEeccCCCCCE--EEEEccCCeEEEEECc-cCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-
Confidence            7    6678865  8888999999999998 77765554  6889999999999   8999999999999999999652 


Q ss_pred             ccCCeeeeeeccccccee-----ecCCCccceeeeeECCCCc-eEEEeecCC
Q psy6859         216 FKFPKCVHFESKLDTDLF-----EFAKNKTYPSGLSFSPDGN-KFVTISMDR  261 (261)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~-~l~s~~~Dg  261 (261)
                                    +.+.     .+.+|...|++++|+|+++ +|++++.||
T Consensus       245 --------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  282 (357)
T 3i2n_A          245 --------------HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG  282 (357)
T ss_dssp             --------------ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             --------------CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC
Confidence                          3332     3348999999999999998 899999886

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.1e-37  Score=234.36  Aligned_cols=229  Identities=15%  Similarity=0.108  Sum_probs=191.6

Q ss_pred             CCCCCeEEEEEcC-CC-eEEEecCCCeEEEEec-cCCceeeeEEeec--cccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859           1 MHRSPITHVVVTK-TD-FVITASNDGHIKFWKK-QEEGIEFVKHFRS--HLGVIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      +|...|++++|+| ++ +|++|+.||.|++|++ .+.   ....+.+  |...|.+++|+| ++++++++.|+.|++||+
T Consensus        54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~  129 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP---SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDP  129 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECH
T ss_pred             ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcc
Confidence            5889999999999 88 9999999999999999 765   2367778  999999999999 999999999999999999


Q ss_pred             cc---------cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-CceeeEEeecCCcceEEEEEEe
Q psy6859          76 IN---------FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMIKLDFTPLTVECIHYL  145 (261)
Q Consensus        76 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~  145 (261)
                      .+         ++.+..+. +...+..+.+.+++  ++++    +.++.|++||+++ ...........+...+.+++|+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~  202 (342)
T 1yfq_A          130 RNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVG----MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL  202 (342)
T ss_dssp             HHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEE----ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred             cccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEE----eCCCeEEEEECCccccccceeeecCCCCceeEEEEC
Confidence            88         77676666 44445555555443  4444    8999999999998 6543333333456689999999


Q ss_pred             C-CCCceEEEEecCCCeEEEEEccCCC------ccceeeccCccc---------CeEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859         146 G-DAIPTAAVSDQDSSHVHIYDCKGNG------TPLHVLDRLHTK---------PVVLIKFNPIYQVVVSVDKAGILEYW  209 (261)
Q Consensus       146 ~-~~~~~~~~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i~iw  209 (261)
                      | ++..  +++++.||.|++|+++ ..      +++..+. .|..         .|.+++|+|++++|++++.||.|++|
T Consensus       203 ~~~~~~--l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw  278 (342)
T 1yfq_A          203 PKEQEG--YACSSIDGRVAVEFFD-DQGDDYNSSKRFAFR-CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             SGGGCE--EEEEETTSEEEEEECC-TTCCSTTCTTCEEEE-CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             CCCCCE--EEEEecCCcEEEEEEc-CCCcccccccceeee-cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence            9 8875  8888899999999998 54      7777886 6654         99999999999999999999999999


Q ss_pred             ecccccccCCeeeeeecccccceeecCCC-ccceeeeeECCCCceEEEeecCC
Q psy6859         210 SGYKQEFKFPKCVHFESKLDTDLFEFAKN-KTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |+.+               ++.+..+.+| ...|.+++  |++++|++++.||
T Consensus       279 d~~~---------------~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          279 NLQT---------------RKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             ETTT---------------TEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             cCcc---------------HhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence            9953               6778888888 99999999  9999999999996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.6e-36  Score=266.52  Aligned_cols=237  Identities=14%  Similarity=0.234  Sum_probs=204.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.+.|++++|+| ++++++|+.||+|++|++.++  +.+..+.+|.+.|.+++|+|+++++++++.|+.|++||+.+++
T Consensus       613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~  690 (1249)
T 3sfz_A          613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK  690 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence            6999999999999 999999999999999999987  7888899999999999999999999999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+..+..+..++..+.+.++++...  +++++.|+.|++||+++++.+..+..  +...+.+++|+|++..  +++++.|
T Consensus       691 ~~~~~~~~~~~v~~~~~~~~~~~~~--l~sg~~d~~v~vwd~~~~~~~~~~~~--h~~~v~~~~~sp~~~~--l~s~s~d  764 (1249)
T 3sfz_A          691 LVHTYDEHSEQVNCCHFTNKSNHLL--LATGSNDFFLKLWDLNQKECRNTMFG--HTNSVNHCRFSPDDEL--LASCSAD  764 (1249)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSCCE--EEEEETTSCEEEEETTSSSEEEEECC--CSSCEEEEEECSSTTE--EEEEESS
T ss_pred             eEEEEcCCCCcEEEEEEecCCCceE--EEEEeCCCeEEEEECCCcchhheecC--CCCCEEEEEEecCCCE--EEEEECC
Confidence            9999988888888888888544322  22458999999999999988887765  4558999999999985  8899999


Q ss_pred             CeEEEEEccCCCccceeec------------------------------------------------------cCcccCe
Q psy6859         160 SHVHIYDCKGNGTPLHVLD------------------------------------------------------RLHTKPV  185 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~------------------------------------------------------~~~~~~v  185 (261)
                      |.|++||++ +++....+.                                                      .+|...|
T Consensus       765 g~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          765 GTLRLWDVR-SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI  843 (1249)
T ss_dssp             SEEEEEEGG-GTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred             CeEEEEeCC-CCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence            999999997 543322221                                                      1466778


Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         186 VLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       186 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+++|+|+++++++++.||.|++||+.               ++..+..+.+|...|.+++|+|+|++|++++.||
T Consensus       844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~---------------~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg  904 (1249)
T 3sfz_A          844 QYCDFSPYDHLAVIALSQYCVELWNID---------------SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ  904 (1249)
T ss_dssp             CEEEECSSTTEEEEECSSSCEEEEETT---------------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcC---------------CCceeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence            888888988888888888999999884               4677888899999999999999999999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=238.13  Aligned_cols=247  Identities=15%  Similarity=0.130  Sum_probs=205.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccc---------------eeEEEEeeCCCEEEEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGV---------------IHSICTNYNGTLLCTV   64 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~s~   64 (261)
                      +|...|++++|+| +++|++++.|+.|++|++.+.  +.+..+..+...               +.+++|++++ .++++
T Consensus       147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  223 (425)
T 1r5m_A          147 FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG--TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIP  223 (425)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT--EEEEEECCC---------------CCCBSCCEEEETT-EEEEE
T ss_pred             CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC--cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEE
Confidence            5899999999999 899999999999999999887  777778777766               9999999986 68889


Q ss_pred             eCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEE
Q psy6859          65 ASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHY  144 (261)
Q Consensus        65 ~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  144 (261)
                      +.||.|++||+.+++.+..+..+..++..+.+++++..+++.    +.|+.|++||+++++.+..+..  +...+.++.|
T Consensus       224 ~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~  297 (425)
T 1r5m_A          224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA----SDDGTLRIWHGGNGNSQNCFYG--HSQSIVSASW  297 (425)
T ss_dssp             CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE----ETTSCEEEECSSSBSCSEEECC--CSSCEEEEEE
T ss_pred             cCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE----cCCCEEEEEECCCCccceEecC--CCccEEEEEE
Confidence            999999999999998888888777888889999988877666    8999999999999888777754  4557899999


Q ss_pred             eCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCe----
Q psy6859         145 LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPK----  220 (261)
Q Consensus       145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----  220 (261)
                      +|++   .+++++.|+.|++||++ +++++..+. .|...|.+++|+|++++|++++.||.|++||+++.......    
T Consensus       298 ~~~~---~l~~~~~d~~i~i~d~~-~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  372 (425)
T 1r5m_A          298 VGDD---KVISCSMDGSVRLWSLK-QNTLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGN  372 (425)
T ss_dssp             ETTT---EEEEEETTSEEEEEETT-TTEEEEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------
T ss_pred             CCCC---EEEEEeCCCcEEEEECC-CCcEeEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecc
Confidence            9998   38888899999999999 888888887 89999999999999999999999999999999754210000    


Q ss_pred             -eeeeecccccceeecCCCcc--ceeeeeECCCCceEEEeecCC
Q psy6859         221 -CVHFESKLDTDLFEFAKNKT--YPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       221 -~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                       ...+.....+.+..+..|..  .|++++|+|++++|++++.||
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  416 (425)
T 1r5m_A          373 RDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ  416 (425)
T ss_dssp             ------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS
T ss_pred             cccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc
Confidence             00001111236778888876  999999999999999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-37  Score=244.36  Aligned_cols=251  Identities=16%  Similarity=0.179  Sum_probs=186.9

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccC---Cc-eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQE---EG-IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~---~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      ||.++|++++|+|  +++|++|+.||+|++||+.+   .. .+....+ .|.+.|.+++|+|++++|++++.||.|++||
T Consensus        61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd  139 (437)
T 3gre_A           61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLK  139 (437)
T ss_dssp             TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            6899999999999  57999999999999999876   31 1223333 4899999999999999999999999999999


Q ss_pred             cc---ccceeeeeecc------------CcceeEEE--EeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc
Q psy6859          75 VI---NFDMINMIKLD------------FTPLTVEC--IHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL  137 (261)
Q Consensus        75 ~~---~~~~~~~~~~~------------~~~~~~~~--~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~  137 (261)
                      +.   +++.......+            ......+.  +.+++..++++    +.|+.|++||+++++.+..+....+..
T Consensus       140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~h~~  215 (437)
T 3gre_A          140 VNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL----TNLSRVIIFDIRTLERLQIIENSPRHG  215 (437)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE----ETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred             eccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE----eCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence            95   55444433211            11122222  22345555544    899999999999999999888754566


Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc----CCCCEEEEEcCCCeEEEeeccc
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN----PIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .+.+++|+|++..  +++++.|+.|++||++ .++++..+...|..+|++++|+    |++++|++++.||.|++||+++
T Consensus       216 ~v~~~~~s~~~~~--l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          216 AVSSICIDEECCV--LILGTTRGIIDIWDIR-FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             CEEEEEECTTSCE--EEEEETTSCEEEEETT-TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred             ceEEEEECCCCCE--EEEEcCCCeEEEEEcC-CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence            8999999999875  8899999999999999 8888887743577899999655    5678999999999999999976


Q ss_pred             ccccCCe--------eeeeeccccc--ceeecCC--CccceeeeeECCCCceEEEeecCC
Q psy6859         214 QEFKFPK--------CVHFESKLDT--DLFEFAK--NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       214 ~~~~~~~--------~~~~~~~~~~--~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++....-        ...+... ++  ....+.+  |...|++++|+ ++++|++++.||
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~  350 (437)
T 3gre_A          293 GHCQYAFINSDEQPSMEHFLPI-EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS  350 (437)
T ss_dssp             TEEEEEEESSSSCCCGGGGSCB-CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT
T ss_pred             CcEEEEEEcCCCCCccceeccc-ccccccceecccccCCceEEEEEC-CceEEEecCCCC
Confidence            4321100        0000000 00  0012333  88889999999 779999999886

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3e-36  Score=232.41  Aligned_cols=235  Identities=10%  Similarity=0.065  Sum_probs=182.4

Q ss_pred             CCCCCeEEEEEcCCCeEEE-----------ecCCCeEEEEeccCCce--eeeEEe-----eccccceeEEEEeeCCCEEE
Q psy6859           1 MHRSPITHVVVTKTDFVIT-----------ASNDGHIKFWKKQEEGI--EFVKHF-----RSHLGVIHSICTNYNGTLLC   62 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s-----------~~~d~~i~iw~~~~~~~--~~~~~~-----~~~~~~v~~~~~~~~~~~l~   62 (261)
                      +|.+.|.++++++ +.+++           ++.|+.+++|++.....  +.....     ..+...+.+++|+|||++++
T Consensus        71 ~~~~~v~s~~~~~-~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la  149 (365)
T 4h5i_A           71 DNDDSPTAIDASK-GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA  149 (365)
T ss_dssp             TTSCCCCEEEEET-TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred             CCCCceEEEEeCC-CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE
Confidence            4677888887764 34444           45688899999876421  222222     22445688999999999987


Q ss_pred             EEe--CCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEE
Q psy6859          63 TVA--SDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVE  140 (261)
Q Consensus        63 s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  140 (261)
                      +++  .|++|++||+.+++++..+. +...+..+.++|+++.++++    + ++.+.+|+..+++.+.......+...+.
T Consensus       150 ~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~----s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (365)
T 4h5i_A          150 IASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYI----T-GSSLEVISTVTGSCIARKTDFDKNWSLS  223 (365)
T ss_dssp             EEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEE----C-SSCEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred             EEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEec----c-ceeEEEEEeccCcceeeeecCCCCCCEE
Confidence            554  78999999999999988887 44567888999999887765    4 6667888888777666555555677899


Q ss_pred             EEEEeCCCCceEEEEecCCC----eEEEEEccCCCcc----ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         141 CIHYLGDAIPTAAVSDQDSS----HVHIYDCKGNGTP----LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      +++|+|++..  +++++.++    .+++||+. ....    ...+. .|..+|++++|+|+|++||+|+.|+.|+|||++
T Consensus       224 ~v~fspdg~~--l~~~s~d~~~~~~i~~~~~~-~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~  299 (365)
T 4h5i_A          224 KINFIADDTV--LIAASLKKGKGIVLTKISIK-SGNTSVLRSKQVT-NRFKGITSMDVDMKGELAVLASNDNSIALVKLK  299 (365)
T ss_dssp             EEEEEETTEE--EEEEEESSSCCEEEEEEEEE-TTEEEEEEEEEEE-SSCSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             EEEEcCCCCE--EEEEecCCcceeEEeecccc-cceecceeeeeec-CCCCCeEeEEECCCCCceEEEcCCCEEEEEECC
Confidence            9999999976  66666565    68889887 4432    34455 789999999999999999999999999999994


Q ss_pred             cccccCCeeeeeecccccceee-cCCCccceeeeeECCCCceEEEeecCC
Q psy6859         213 KQEFKFPKCVHFESKLDTDLFE-FAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                     +++++.. +.+|...|++++|||||++||+||.|+
T Consensus       300 ---------------~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          300 ---------------DLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             ---------------TTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred             ---------------CCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC
Confidence                           4677776 578999999999999999999999996

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.1e-37  Score=239.52  Aligned_cols=235  Identities=15%  Similarity=0.207  Sum_probs=192.7

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCce-----eeeEEeeccccceeEEEEeeCC-CEEEEEeCCCcEEE
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGI-----EFVKHFRSHLGVIHSICTNYNG-TLLCTVASDKAMKV   72 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~~   72 (261)
                      ||.++|++++|+|  +++|++|+.||.|++|++.+...     +.+..+.+|...|.+++|+|++ ++|++++.|+.|++
T Consensus        79 ~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~i  158 (402)
T 2aq5_A           79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV  158 (402)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEE
T ss_pred             cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEE
Confidence            6999999999998  57999999999999999987532     4577888999999999999998 69999999999999


Q ss_pred             EEccccceeeee--eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCc
Q psy6859          73 FDVINFDMINMI--KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIP  150 (261)
Q Consensus        73 wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (261)
                      ||+.+++.+..+  ..+...+..+.+++++..++++    +.|+.|++||+++++.+..+........+.++.|+|++..
T Consensus       159 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (402)
T 2aq5_A          159 WDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS----CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI  234 (402)
T ss_dssp             EETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE----ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE
T ss_pred             EECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE----ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE
Confidence            999999988888  5667778888999988887776    8999999999999988887732222334788999999864


Q ss_pred             eEEEEe---cCCCeEEEEEccCCCc-cceeeccCcccCeEEEEEcCCCCEEE-EEcCCCeEEEeecccccccCCeeeeee
Q psy6859         151 TAAVSD---QDSSHVHIYDCKGNGT-PLHVLDRLHTKPVVLIKFNPIYQVVV-SVDKAGILEYWSGYKQEFKFPKCVHFE  225 (261)
Q Consensus       151 ~~~~~~---~~d~~i~i~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~  225 (261)
                        +++|   +.|+.|++||++ ..+ ++......+...+.+++|+|++++|+ +++.||.|++||+.+            
T Consensus       235 --l~~g~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~------------  299 (402)
T 2aq5_A          235 --LTTGFSRMSERQVALWDTK-HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS------------  299 (402)
T ss_dssp             --EEEEECTTCCEEEEEEETT-BCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS------------
T ss_pred             --EEEeccCCCCceEEEEcCc-cccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC------------
Confidence              7777   789999999998 543 34443325778899999999999886 566899999999964            


Q ss_pred             cccccc-eeecCC--CccceeeeeECCCCceEEEe
Q psy6859         226 SKLDTD-LFEFAK--NKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       226 ~~~~~~-~~~~~~--~~~~v~~~~~s~~~~~l~s~  257 (261)
                         ++. +..+..  |...|.+++|+|++.+++++
T Consensus       300 ---~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~  331 (402)
T 2aq5_A          300 ---EAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK  331 (402)
T ss_dssp             ---STTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred             ---CCcceEeecccccCCcccceEEecccccceec
Confidence               221 333333  56899999999999987754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.7e-37  Score=236.38  Aligned_cols=249  Identities=11%  Similarity=0.102  Sum_probs=198.9

Q ss_pred             CCCCCeEEEEEcC-----CCeEEEecCCCeEEEEeccCCceeeeEEeec-----cccceeEEEEeeC----CCEEEEEeC
Q psy6859           1 MHRSPITHVVVTK-----TDFVITASNDGHIKFWKKQEEGIEFVKHFRS-----HLGVIHSICTNYN----GTLLCTVAS   66 (261)
Q Consensus         1 gH~~~v~~~~~~~-----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~s~~~   66 (261)
                      ||.++|++++|+|     ...+++++.++.|++|++.+.  +.+..+..     |...|.+++|+|+    +++|++++.
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            7999999999997     345777777789999999865  33444433     5578999999998    679999999


Q ss_pred             CCcEEEEEccccceeeeeeccCcceeEEEEee-cCCceeeeeeecCCCCeEEEEEcCCCceeeEEee-cCCcceEEEEEE
Q psy6859          67 DKAMKVFDVINFDMINMIKLDFTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-DFTPLTVECIHY  144 (261)
Q Consensus        67 dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~  144 (261)
                      ||.|++||+.+++.+..+..+..++..+.+++ ++..++++    +.|+.|++||+++++.+..+.. ..+...+.+++|
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV----SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEE----ETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEE----eCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence            99999999999999999888888888999998 77766665    8999999999999988777632 345668999999


Q ss_pred             eCCCCceEEEEecCCCeEEEEEccCCCccceeec---------------------------cCcccCeEEEEEcCCCCEE
Q psy6859         145 LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD---------------------------RLHTKPVVLIKFNPIYQVV  197 (261)
Q Consensus       145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---------------------------~~~~~~v~~~~~~~~~~~l  197 (261)
                      +|++..  +++++.|+.|++||++ +++.+..+.                           ..|...|.+++|+  +++|
T Consensus       170 ~~~~~~--l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l  244 (366)
T 3k26_A          170 DLLGEK--IMSCGMDHSLKLWRIN-SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI  244 (366)
T ss_dssp             CTTSSE--EEEEETTSCEEEEESC-SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred             CCCCCE--EEEecCCCCEEEEECC-CCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence            999875  8888999999999998 665554443                           0288999999998  7799


Q ss_pred             EEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCC--CceEEEeecCC
Q psy6859         198 VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPD--GNKFVTISMDR  261 (261)
Q Consensus       198 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~Dg  261 (261)
                      ++++.|+.|++||+.+....... ..........+..+..|...|++++|+|+  +++|++++.||
T Consensus       245 ~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  309 (366)
T 3k26_A          245 LSKSCENAIVCWKPGKMEDDIDK-IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG  309 (366)
T ss_dssp             EEECSSSEEEEEEESSTTCCGGG-CCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred             EEEecCCEEEEEeCCCccccccc-cccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence            99999999999998654221110 00001112446777889999999999999  99999999886

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-37  Score=248.80  Aligned_cols=220  Identities=10%  Similarity=0.039  Sum_probs=168.4

Q ss_pred             EEEecCCCeEEEEeccCCcee--eeEEeeccccceeEEEEeeC------CCEEEEEeCCCcEEEEEcccccee-------
Q psy6859          17 VITASNDGHIKFWKKQEEGIE--FVKHFRSHLGVIHSICTNYN------GTLLCTVASDKAMKVFDVINFDMI-------   81 (261)
Q Consensus        17 l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~v~~wd~~~~~~~-------   81 (261)
                      +++++.|++|+||++.++...  ....+.+|.+.|.+++|+|+      +.+|++++.||+|++||+.+++..       
T Consensus       176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~  255 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC  255 (524)
T ss_dssp             ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred             hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence            344668899999999875322  23456778899999999996      579999999999999999766421       


Q ss_pred             ----eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCCcceEEEE--EEeCCCCceEEE
Q psy6859          82 ----NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFTPLTVECI--HYLGDAIPTAAV  154 (261)
Q Consensus        82 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  154 (261)
                          ..+..+..++..+.++++ ..++    +|+.||+|++||++++. +...+..  +...|.++  .|+|++.. +++
T Consensus       256 ~~p~~~l~~h~~~v~sv~~s~~-~~la----sgs~DgtV~lWD~~~~~~~~~~~~~--H~~~V~sv~~~~s~~g~~-~la  327 (524)
T 2j04_B          256 EKPSLTLSLADSLITTFDFLSP-TTVV----CGFKNGFVAEFDLTDPEVPSFYDQV--HDSYILSVSTAYSDFEDT-VVS  327 (524)
T ss_dssp             CSCSEEECCTTTCEEEEEESSS-SEEE----EEETTSEEEEEETTBCSSCSEEEEC--SSSCEEEEEEECCTTSCC-EEE
T ss_pred             cCceEEEEcCCCCEEEEEecCC-CeEE----EEeCCCEEEEEECCCCCCceEEeec--ccccEEEEEEEcCCCCCe-EEE
Confidence                234445566777777654 3444    45899999999999763 3444554  45578888  56777621 389


Q ss_pred             EecCCCeEEEEEccCCCccceeeccCccc--CeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTK--PVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL  232 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  232 (261)
                      +++.|++|++||++ +++++..+. +|..  .|.+++|+|+++.|++++.|++|++||+++               +.++
T Consensus       328 S~S~D~tvklWD~~-~~~~~~~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~---------------~~~~  390 (524)
T 2j04_B          328 TVAVDGYFYIFNPK-DIATTKTTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA---------------AFAV  390 (524)
T ss_dssp             EEETTSEEEEECGG-GHHHHCEEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC---------------TTCC
T ss_pred             EeccCCeEEEEECC-CCCcccccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc---------------cccc
Confidence            99999999999999 777777775 5543  588999999999999999999999999953               5666


Q ss_pred             eecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         233 FEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       233 ~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..+.+|...|++++|+|+|++|++|+.||
T Consensus       391 ~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg  419 (524)
T 2j04_B          391 HPLVSRETTITAIGVSRLHPMVLAGSADG  419 (524)
T ss_dssp             EEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred             eeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence            77888999999999999999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-37  Score=241.98  Aligned_cols=251  Identities=12%  Similarity=0.107  Sum_probs=197.7

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCc------e-eeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcE
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEG------I-EFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAM   70 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~------~-~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v   70 (261)
                      +|...|++++|+|  +++|++++.|+.|++||+.+..      . .....+..|...|.+++|+|+ +.+|++++.|+.|
T Consensus       111 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v  190 (416)
T 2pm9_A          111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFA  190 (416)
T ss_dssp             CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCE
T ss_pred             CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCE
Confidence            6899999999998  5799999999999999998753      1 122334679999999999998 7899999999999


Q ss_pred             EEEEccccceeeeeecc------CcceeEEEEeecCC-ceeeeeeecCCCC---eEEEEEcCCC-ceeeEEeecCCcceE
Q psy6859          71 KVFDVINFDMINMIKLD------FTPLTVECIHYLGD-AIPTAAVSDQDSS---RVHIYDCKGN-DMINMIKLDFTPLTV  139 (261)
Q Consensus        71 ~~wd~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~s~~~d~---~i~i~d~~~~-~~~~~~~~~~~~~~~  139 (261)
                      ++||+.+++.+..+..+      ..++..+.+++++. .+++.    +.|+   .|++||++++ .++..+. ..+...+
T Consensus       191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v  265 (416)
T 2pm9_A          191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA----TGSDNDPSILIWDLRNANTPLQTLN-QGHQKGI  265 (416)
T ss_dssp             EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE----ECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCE
T ss_pred             EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE----ECCCCCceEEEEeCCCCCCCcEEee-cCccCce
Confidence            99999999988888765      56778888888875 44444    6777   9999999986 4555544 0245689


Q ss_pred             EEEEEeC-CCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC-CEEEEEcCCCeEEEeeccccccc
Q psy6859         140 ECIHYLG-DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY-QVVVSVDKAGILEYWSGYKQEFK  217 (261)
Q Consensus       140 ~~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~  217 (261)
                      .+++|+| ++..  +++++.|+.|++||++ +++++..+. .|...|.+++|+|++ ++|++++.|+.|++||+.+....
T Consensus       266 ~~~~~s~~~~~~--l~s~~~dg~v~~wd~~-~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          266 LSLDWCHQDEHL--LLSSGRDNTVLLWNPE-SAEQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             EEEEECSSCSSC--EEEEESSSEEEEECSS-SCCEEEEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             eEEEeCCCCCCe--EEEEeCCCCEEEeeCC-CCccceeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            9999999 7765  8889999999999999 889999998 899999999999999 79999999999999999765322


Q ss_pred             CCeee-----------eee----------cccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         218 FPKCV-----------HFE----------SKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       218 ~~~~~-----------~~~----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .....           .+.          ...... .....|..++.+++|+|+|++|++++.||
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~  405 (416)
T 2pm9_A          342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGK  405 (416)
T ss_dssp             SCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSS
T ss_pred             cccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCC
Confidence            11100           000          000011 12223678888999999999999999886

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.2e-35  Score=236.29  Aligned_cols=230  Identities=15%  Similarity=0.185  Sum_probs=193.7

Q ss_pred             CCCCCe-EEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPI-THVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v-~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.+.| .++.++ +++|++|+.||+|++||+.+.  +.+..+.+|.+.|.+++|+|++ ++++++.||+|++||+.+++
T Consensus       119 ~h~~~v~~~~~~~-~~~l~sgs~dg~i~vwd~~~~--~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~  194 (464)
T 3v7d_B          119 GHMTSVITCLQFE-DNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC  194 (464)
T ss_dssp             CCSSSCEEEEEEE-TTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE
T ss_pred             CCCCCcEEEEEEC-CCEEEEEcCCCcEEEEECCCC--cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc
Confidence            688775 666664 679999999999999999987  8889999999999999999988 99999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEee--cCCceeeeeeecCCCCeEEEEEcCCCceeeE---------------------EeecCCc
Q psy6859          80 MINMIKLDFTPLTVECIHY--LGDAIPTAAVSDQDSSRVHIYDCKGNDMINM---------------------IKLDFTP  136 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~---------------------~~~~~~~  136 (261)
                      .+..+..+..++..+.+.+  ++..++++    +.|+.|++||+++......                     .....+.
T Consensus       195 ~~~~~~~h~~~v~~l~~~~~~~~~~l~s~----s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTG----SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             EEEEECCCSSCEEEEEEEESSSCEEEEEE----ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             EEEEECCCCCccEEEEEecCCCCCEEEEE----cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence            9998888888888888875  34445544    8999999999997754321                     1222344


Q ss_pred             ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccc
Q psy6859         137 LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEF  216 (261)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  216 (261)
                      ..+.++..  ++..  +++++.|+.|++||++ +++++..+. +|...|.+++|+|++++|++++.||.|++||++    
T Consensus       271 ~~v~~~~~--~~~~--l~~~~~d~~i~vwd~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~----  340 (464)
T 3v7d_B          271 ASVRTVSG--HGNI--VVSGSYDNTLIVWDVA-QMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLE----  340 (464)
T ss_dssp             SCEEEEEE--ETTE--EEEEETTSCEEEEETT-TTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETT----
T ss_pred             ceEEEEcC--CCCE--EEEEeCCCeEEEEECC-CCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----
Confidence            56666654  4443  8899999999999999 889999997 899999999999999999999999999999994    


Q ss_pred             cCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         217 KFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                 +++++..+.+|...|.+++|+  +++|++++.||
T Consensus       341 -----------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg  372 (464)
T 3v7d_B          341 -----------NGELMYTLQGHTALVGLLRLS--DKFLVSAAADG  372 (464)
T ss_dssp             -----------TTEEEEEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred             -----------CCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC
Confidence                       467888899999999999997  57999999986

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.7e-37  Score=236.91  Aligned_cols=201  Identities=10%  Similarity=0.015  Sum_probs=161.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG-IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      +|...|++++|+| +++|++++.|++|++||+.+.. ......+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus        53 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  132 (377)
T 3dwl_C           53 DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE  132 (377)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred             cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence            6999999999999 8999999999999999998863 3366777889999999999999999999999999999999887


Q ss_pred             c---eeeeeec-cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC------------------ceeeEEeecCCc
Q psy6859          79 D---MINMIKL-DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN------------------DMINMIKLDFTP  136 (261)
Q Consensus        79 ~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~------------------~~~~~~~~~~~~  136 (261)
                      +   ....+.. +...+..+.+++++..++++    +.|+.|++||++..                  +++..+   .+.
T Consensus       133 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  205 (377)
T 3dwl_C          133 NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG----CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSG  205 (377)
T ss_dssp             --CCCCEEECSSCCSCEEEEEECTTSSEEEEE----ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCS
T ss_pred             ccceeeeEeecccCCCeEEEEEcCCCCEEEEE----eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCC
Confidence            6   3566665 66778888898888877766    89999999998632                  233333   456


Q ss_pred             ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc----ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         137 LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP----LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      ..+.+++|+|++.+  +++++.|+.|++||++ +++.    +..+. .|..+|.+++|+|++++|++++.++.+ +|+..
T Consensus       206 ~~v~~~~~sp~~~~--l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          206 GWVHAVGFSPSGNA--LAYAGHDSSVTIAYPS-APEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SSEEEEEECTTSSC--EEEEETTTEEC-CEEC-STTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             ceEEEEEECCCCCE--EEEEeCCCcEEEEECC-CCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            67999999999986  8899999999999999 7766    77787 899999999999999999999877755 77665


Q ss_pred             c
Q psy6859         213 K  213 (261)
Q Consensus       213 ~  213 (261)
                      .
T Consensus       281 ~  281 (377)
T 3dwl_C          281 E  281 (377)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.6e-37  Score=239.94  Aligned_cols=225  Identities=9%  Similarity=0.074  Sum_probs=161.7

Q ss_pred             CCeEEEecCCCeEEEEeccCCcee---eeEEeeccccceeEEEEee--------CCCEEEEEeCCCcEEEEEccccceee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIE---FVKHFRSHLGVIHSICTNY--------NGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~v~~~~~~~--------~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      +.+|++|+.|++|+|||...+...   .+..+.+|.+.|++++|+|        |+++|++++.|++|+|||+.++..+.
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~  180 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL  180 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence            557999999999999999876322   2345688999999999998        78999999999999999999888777


Q ss_pred             eeeccCcceeEEEEeecCC-ceeeeeeecCCCCeEEEEEcCCCceeeEEee-----------------------cCCcce
Q psy6859          83 MIKLDFTPLTVECIHYLGD-AIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-----------------------DFTPLT  138 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-----------------------~~~~~~  138 (261)
                      .+..+..++..+.++|++. .+++    ++.|++|++||+++++.......                       ..+...
T Consensus       181 ~~~~~~~~v~~v~~~p~~~~~l~~----~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  256 (393)
T 4gq1_A          181 AGYPLSSPGISVQFRPSNPNQLIV----GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS  256 (393)
T ss_dssp             EEEECSSCEEEEEEETTEEEEEEE----EETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred             eecCCCCCcEEEEECCCCCceEEe----cCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence            7776777788888888764 3444    48999999999998764333211                       122345


Q ss_pred             EEEEEEe-CCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEE------------------cC--CCCEE
Q psy6859         139 VECIHYL-GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKF------------------NP--IYQVV  197 (261)
Q Consensus       139 ~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~------------------~~--~~~~l  197 (261)
                      +.++.|. +++..  +++++.|+++++||+. .++....+. .|...+..+.+                  +|  ++.++
T Consensus       257 v~~v~~~~~dg~~--l~s~s~d~~i~vwd~~-~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (393)
T 4gq1_A          257 LANVRWIGSDGSG--ILAMCKSGAWLRWNLF-ANNDYNEIS-DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA  332 (393)
T ss_dssp             CSEEEEETTTTCE--EEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred             ceeeeeecCCCCE--EEEEeCCCCEEEEECc-cCCCCceEe-eecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence            6678876 67765  8899999999999998 666655554 44444443333                  32  33467


Q ss_pred             EEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         198 VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       198 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++|+.||.|++||+.+               ++.+..+.+|..+|++++|+|||++||++++||
T Consensus       333 ~sgs~Dg~V~lwd~~~---------------~~~~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          333 TAHSQHGLIQLINTYE---------------KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             EEETTTTEEEEEETTC---------------TTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             EEECCCCEEEEEECCC---------------CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            8899999999999954               566667777889999999999999999999885

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.3e-35  Score=250.86  Aligned_cols=234  Identities=14%  Similarity=0.182  Sum_probs=204.2

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-   78 (261)
                      +|..+|++++|+| +++|++|+.||.|++|++.++  +.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.++ 
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~  130 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW  130 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc
Confidence            6899999999999 999999999999999999987  778888999999999999999999999999999999999887 


Q ss_pred             ceeeeeeccCcceeEEEEee-cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC--CCCceEEEE
Q psy6859          79 DMINMIKLDFTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG--DAIPTAAVS  155 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  155 (261)
                      .....+..+..++..+.+++ ++..++++    +.|+.|++||++++.....+..+ +...+.+++|+|  ++..  +++
T Consensus       131 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~----~~dg~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--l~~  203 (814)
T 3mkq_A          131 ALEQTFEGHEHFVMCVAFNPKDPSTFASG----CLDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPY--MIT  203 (814)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEE----ETTSEEEEEETTCSSCSEEEECC-CTTCCCEEEECCSTTCCE--EEE
T ss_pred             eEEEEEcCCCCcEEEEEEEcCCCCEEEEE----eCCCeEEEEECCCCcceeEEecC-CCCCEEEEEEEECCCCCE--EEE
Confidence            66667777777788888888 66666655    89999999999988777776654 335788899998  7764  889


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF  235 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
                      ++.|+.|++||++ +++++..+. .|...|.+++|+|++++|++++.||.|++||+.               +++.+..+
T Consensus       204 ~~~dg~i~~~d~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~---------------~~~~~~~~  266 (814)
T 3mkq_A          204 ASDDLTIKIWDYQ-TKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---------------TYKVEKTL  266 (814)
T ss_dssp             ECTTSEEEEEETT-TTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---------------TCSEEEEE
T ss_pred             EeCCCEEEEEECC-CCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC---------------CCcEEEEe
Confidence            9999999999998 888888887 899999999999999999999999999999984               36777888


Q ss_pred             CCCccceeeeeECCCCc--eEEEeecC
Q psy6859         236 AKNKTYPSGLSFSPDGN--KFVTISMD  260 (261)
Q Consensus       236 ~~~~~~v~~~~~s~~~~--~l~s~~~D  260 (261)
                      ..|...+.+++|+|+++  ++++++.+
T Consensus       267 ~~~~~~v~~~~~~~~~~~~~~~~~~~~  293 (814)
T 3mkq_A          267 NVGLERSWCIATHPTGRKNYIASGFDN  293 (814)
T ss_dssp             CCSSSSEEEEEECTTCGGGEEEEEETT
T ss_pred             ecCCCcEEEEEEccCCCceEEEEEeCC
Confidence            88999999999999987  46666544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=218.66  Aligned_cols=235  Identities=14%  Similarity=0.199  Sum_probs=194.8

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|...|++++|+| +++|++|+.||+|++|+++++  +.+..+.+|...+.++.  ++++.+++++.++.+++|+.....
T Consensus        65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~--~~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~  140 (318)
T 4ggc_A           65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAE  140 (318)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSS
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc--eeEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCc
Confidence            5788999999999 999999999999999999988  88889999988877655  456799999999999999987654


Q ss_pred             -eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee--EEeecCCcceEEEEEEeCCCCceE-EEE
Q psy6859          80 -MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN--MIKLDFTPLTVECIHYLGDAIPTA-AVS  155 (261)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~  155 (261)
                       .+..+..+........+.+.+..+++.    +.|+.|++||+++++...  ......+...+.++.+.|+....+ +++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  216 (318)
T 4ggc_A          141 HHVATLSGHSQEVCGLRWAPDGRHLASG----GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG  216 (318)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEE----ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred             eeEEEEcCccCceEEEEEcCCCCEEEEE----ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence             555666677777788888888877666    899999999998765332  222333455788999998877643 356


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE--cCCCeEEEeecccccccCCeeeeeeccccccee
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV--DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF  233 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  233 (261)
                      ++.++.|++||.+ ........  .+...+..+.|+|+++.++++  +.|+.|++||++               +++++.
T Consensus       217 ~~~~~~i~lwd~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~---------------~~~~~~  278 (318)
T 4ggc_A          217 GTSDRHIRIWNVC-SGACLSAV--DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP---------------TMAKVA  278 (318)
T ss_dssp             CTTTCEEEEEETT-TCCEEEEE--ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT---------------TCCEEE
T ss_pred             cCCCCEEEEEecc-cccccccc--cceeeeeeeeecccccceEEEEEcCCCEEEEEECC---------------CCcEEE
Confidence            7889999999998 66666665  578889999999999977654  489999999994               478889


Q ss_pred             ecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         234 EFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       234 ~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+.+|.+.|++++|+|+|++|++||.||
T Consensus       279 ~l~gH~~~V~~l~~spdg~~l~S~s~D~  306 (318)
T 4ggc_A          279 ELKGHTSRVLSLTMSPDGATVASAAADE  306 (318)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence            9999999999999999999999999997

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.7e-35  Score=231.32  Aligned_cols=230  Identities=15%  Similarity=0.221  Sum_probs=191.2

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ||.+.|++++|+|+.++++|+.||+|++||+.++  +....+.+|.+.|.+++|++  +++++++++.|+.|++||+.++
T Consensus       160 ~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~  237 (464)
T 3v7d_B          160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG--CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE  237 (464)
T ss_dssp             CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCC
T ss_pred             CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC--cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCC
Confidence            6999999999999559999999999999999987  78889999999999999984  7789999999999999999876


Q ss_pred             ceeeee---------------------eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc
Q psy6859          79 DMINMI---------------------KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL  137 (261)
Q Consensus        79 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~  137 (261)
                      +.....                     ....+...+..+.++++.++++    +.|+.|++||+++++.+..+..  +..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~----~~d~~i~vwd~~~~~~~~~~~~--~~~  311 (464)
T 3v7d_B          238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG----SYDNTLIVWDVAQMKCLYILSG--HTD  311 (464)
T ss_dssp             CCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEE----ETTSCEEEEETTTTEEEEEECC--CSS
T ss_pred             cccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEE----eCCCeEEEEECCCCcEEEEecC--CCC
Confidence            533211                     1122333455567777777666    8999999999999988887765  456


Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK  217 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  217 (261)
                      .+.++.|+|++..  +++++.|+.|++||++ +++++..+. +|...|.+++|+  +++|++++.||.|++||+.+    
T Consensus       312 ~v~~~~~~~~~~~--l~sg~~dg~i~vwd~~-~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~----  381 (464)
T 3v7d_B          312 RIYSTIYDHERKR--CISASMDTTIRIWDLE-NGELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGSIRGWDAND----  381 (464)
T ss_dssp             CEEEEEEETTTTE--EEEEETTSCEEEEETT-TTEEEEEEC-CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT----
T ss_pred             CEEEEEEcCCCCE--EEEEeCCCcEEEEECC-CCcEEEEEe-CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC----
Confidence            7999999999876  8899999999999999 899999998 999999999997  57999999999999999954    


Q ss_pred             CCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         218 FPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                 ....... .+...+..++|+|++++|++++ ||
T Consensus       382 -----------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg  412 (464)
T 3v7d_B          382 -----------YSRKFSY-HHTNLSAITTFYVSDNILVSGS-EN  412 (464)
T ss_dssp             -----------CCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred             -----------Cceeeee-cCCCCccEEEEEeCCCEEEEec-CC
Confidence                       2333322 2566788899999999999998 54

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.6e-35  Score=256.80  Aligned_cols=251  Identities=14%  Similarity=0.159  Sum_probs=213.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee--CCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY--NGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      +|.+.|++++|+| +++|++++.|+.|++||+.++  +.+..+.+|...|.+++|+|  ++.++++++.|+.|++||+.+
T Consensus       655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~  732 (1249)
T 3sfz_A          655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG--KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ  732 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS
T ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Confidence            6999999999999 899999999999999999987  78889999999999999999  566899999999999999999


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee-------------------------
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-------------------------  132 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-------------------------  132 (261)
                      ++.+..+..+..++..+.+++++..++++    +.|+.|++||+++++....+..                         
T Consensus       733 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~----s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  808 (1249)
T 3sfz_A          733 KECRNTMFGHTNSVNHCRFSPDDELLASC----SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA  808 (1249)
T ss_dssp             SSEEEEECCCSSCEEEEEECSSTTEEEEE----ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred             cchhheecCCCCCEEEEEEecCCCEEEEE----ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence            99999888888889999999999877776    8999999999987755443321                         


Q ss_pred             ----------------------------cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccC
Q psy6859         133 ----------------------------DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKP  184 (261)
Q Consensus       133 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  184 (261)
                                                  ..+...+.+++|+|++..  +++++.++.|++||+. ++..+..+. +|...
T Consensus       809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~~dg~v~vwd~~-~~~~~~~~~-~h~~~  884 (1249)
T 3sfz_A          809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL--AVIALSQYCVELWNID-SRLKVADCR-GHLSW  884 (1249)
T ss_dssp             TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTE--EEEECSSSCEEEEETT-TTEEEEEEC-CCSSC
T ss_pred             CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCE--EEEEeCCCeEEEEEcC-CCceeeecC-CCccc
Confidence                                        023446778899999875  8888999999999999 888888897 99999


Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEeecccccccC----------------------------------------------
Q psy6859         185 VVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF----------------------------------------------  218 (261)
Q Consensus       185 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------------------------------  218 (261)
                      |++++|+|++++|++++.||.|++||+.+.....                                              
T Consensus       885 v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  964 (1249)
T 3sfz_A          885 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV  964 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCE
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcE
Confidence            9999999999999999999999999975421000                                              


Q ss_pred             ------------------CeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         219 ------------------PKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       219 ------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                        .....++..+++.+..+.+|...|++++|+|+|++|++++.||
T Consensus       965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg 1025 (1249)
T 3sfz_A          965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS 1025 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSS
T ss_pred             EEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCC
Confidence                              0112244455667777888999999999999999999999886

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=232.83  Aligned_cols=249  Identities=12%  Similarity=0.127  Sum_probs=184.1

Q ss_pred             CCeEEEEEcC-C--CeEEEecCCCeEEEEeccCCcee-------------------------------------eeEE-e
Q psy6859           4 SPITHVVVTK-T--DFVITASNDGHIKFWKKQEEGIE-------------------------------------FVKH-F   42 (261)
Q Consensus         4 ~~v~~~~~~~-~--~~l~s~~~d~~i~iw~~~~~~~~-------------------------------------~~~~-~   42 (261)
                      +.|++++|+| +  .+|++++.|++|++|++.+....                                     +... .
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            8899999999 6  78999999999999998763211                                     1112 3


Q ss_pred             eccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeee-------eeccCcceeEEEEeecC-CceeeeeeecCCC
Q psy6859          43 RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMINM-------IKLDFTPLTVECIHYLG-DAIPTAAVSDQDS  113 (261)
Q Consensus        43 ~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d  113 (261)
                      .+|...|.+++|+|++++|+++ .|+.|++||+.+ ++.+..       +..+...+..+.+++++ ..++++    +.|
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~----~~d  248 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS----SSK  248 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE----ETT
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE----eCC
Confidence            6799999999999999999998 799999999984 444442       33455668888888887 666665    899


Q ss_pred             CeEEEEEcCCCce----eeEEeecCCc----------ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeecc
Q psy6859         114 SRVHIYDCKGNDM----INMIKLDFTP----------LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR  179 (261)
Q Consensus       114 ~~i~i~d~~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  179 (261)
                      +.|++||+++++.    +..+..+..+          ..+.+++|+|++.+  +++++. +.|++||++..++++..+. 
T Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~~~~-~~v~iwd~~~~~~~~~~~~-  324 (447)
T 3dw8_B          249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY--MMTRDY-LSVKVWDLNMENRPVETYQ-  324 (447)
T ss_dssp             SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE--EEEEES-SEEEEEETTCCSSCSCCEE-
T ss_pred             CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE--EEEeeC-CeEEEEeCCCCccccceee-
Confidence            9999999998876    5666543221          27999999999976  778887 9999999983388888887 


Q ss_pred             CcccC---------------eEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeee--------e--------eccc
Q psy6859         180 LHTKP---------------VVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVH--------F--------ESKL  228 (261)
Q Consensus       180 ~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~--------~~~~  228 (261)
                      .|...               +..++|+|++++|++++.||.|++||+.+++...-....        .        ..+.
T Consensus       325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (447)
T 3dw8_B          325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRK  404 (447)
T ss_dssp             SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCC
T ss_pred             ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcc
Confidence            66542               334899999999999999999999999765321100000        0        0000


Q ss_pred             -ccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         229 -DTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       229 -~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                       .........+...|..++|+|++++||+++.|+
T Consensus       405 ~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          405 KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred             cccccccccccCCceeEEEECCCCCEEEEEecce
Confidence             000001113456789999999999999998874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-35  Score=248.72  Aligned_cols=231  Identities=11%  Similarity=0.137  Sum_probs=186.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.+.|++++|+| +++||+|+.||+|+||+....  +....+ .|..+|.+++|+| +++|++++.|++|++||+.+++
T Consensus        15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~--~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~   90 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV--EVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK   90 (902)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC--EEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred             CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc--EEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence            7999999999999 999999999999999998765  544444 3788999999999 8899999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe----------ecCCcceEEEEEEeCCCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK----------LDFTPLTVECIHYLGDAI  149 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  149 (261)
                      .+..+. +...+..+.++++++.++++    +.||.|++||+++++.. .+.          ...+...|.+++|+|++.
T Consensus        91 ~~~~~~-~~~~V~~v~~sp~g~~l~sg----s~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           91 VLTTVF-VPGKITSIDTDASLDWMLIG----LQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             EEEEEE-CSSCEEEEECCTTCSEEEEE----ETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred             EEEEEc-CCCCEEEEEECCCCCEEEEE----cCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCC
Confidence            888886 44567888888888877766    89999999999988653 211          233556899999999753


Q ss_pred             ceEEEEecCCCeEEEEEccCCCccceeeccCc------------------ccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLH------------------TKPVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      . .+++|+.|+.| +||++ +++++..+. .|                  ...|++++|+|+|++|++++.||.|++||+
T Consensus       165 ~-~l~~g~~dg~v-lWd~~-~~~~~~~~~-~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          165 G-TVLISYEYVTL-TYSLV-ENEIKQSFI-YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             E-EEEEECSSCEE-EEETT-TTEEEEEEC-CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             C-EEEEEeCCCcE-EEECC-CCceEEEEe-cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            2 37788899999 99999 888877775 44                  477999999999999999999999999999


Q ss_pred             ccccccCCeeeeeecccccceee--c---C-------------CCccceeeeeEC----CCC-ceEEEeecC
Q psy6859         212 YKQEFKFPKCVHFESKLDTDLFE--F---A-------------KNKTYPSGLSFS----PDG-NKFVTISMD  260 (261)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~--~---~-------------~~~~~v~~~~~s----~~~-~~l~s~~~D  260 (261)
                      +++               +++..  +   .             .|...|++++|+    |++ .+|++|+.|
T Consensus       241 ~~g---------------~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          241 NSG---------------HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             TTC---------------CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             CCC---------------cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            653               22211  1   1             245689999995    554 567777665

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-35  Score=233.68  Aligned_cols=251  Identities=12%  Similarity=0.102  Sum_probs=187.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEecc---CCceeeeEEeec------------cccceeEEE--EeeCCCEEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQ---EEGIEFVKHFRS------------HLGVIHSIC--TNYNGTLLC   62 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~---~~~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~   62 (261)
                      +|..+|++++|+| +++|++|+.||.|++||++   .+  +....+..            +...+.++.  +++++++|+
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQE--SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV  186 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEET--TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCC--ceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence            4889999999999 8999999999999999995   32  22222221            445566666  457899999


Q ss_pred             EEeCCCcEEEEEccccceeeeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEE
Q psy6859          63 TVASDKAMKVFDVINFDMINMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVE  140 (261)
Q Consensus        63 s~~~dg~v~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  140 (261)
                      +++.|+.|++||+.+++.+..+..  +...+..+.+++++..++++    +.|+.|++||+++++.+..+... +...+.
T Consensus       187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~  261 (437)
T 3gre_A          187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILG----TTRGIIDIWDIRFNVLIRSWSFG-DHAPIT  261 (437)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEE----ETTSCEEEEETTTTEEEEEEBCT-TCEEEE
T ss_pred             EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEE----cCCCeEEEEEcCCccEEEEEecC-CCCceE
Confidence            999999999999999999998886  56778888888888877766    89999999999999888877643 345889


Q ss_pred             EEEEeCCC--CceEEEEecCCCeEEEEEccCCCccceeeccC--------------------------cccCeEEEEEcC
Q psy6859         141 CIHYLGDA--IPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL--------------------------HTKPVVLIKFNP  192 (261)
Q Consensus       141 ~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~  192 (261)
                      ++.++|..  ...++++++.|+.|++||++ +++.+..+. .                          |...|++++|+ 
T Consensus       262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-  338 (437)
T 3gre_A          262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFV-KGHCQYAFI-NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-  338 (437)
T ss_dssp             EEEECTTTCTTEEEEEEESTTEEEEEEETT-TTEEEEEEE-SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-
T ss_pred             EEEeccccCCCccEEEEEcCCCcEEEEEcC-CCcEEEEEE-cCCCCCccceecccccccccceecccccCCceEEEEEC-
Confidence            99776541  12348999999999999998 777665554 2                          66678899999 


Q ss_pred             CCCEEEEEcCCCeEEEeecccccccCCee------ee----------------eecccccceeecCCCccceeeeeECCC
Q psy6859         193 IYQVVVSVDKAGILEYWSGYKQEFKFPKC------VH----------------FESKLDTDLFEFAKNKTYPSGLSFSPD  250 (261)
Q Consensus       193 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~----------------~~~~~~~~~~~~~~~~~~v~~~~~s~~  250 (261)
                      ++++|++++.|+.|++||+.+++....-.      ..                ++............|...|++++|+++
T Consensus       339 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~  418 (437)
T 3gre_A          339 NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV  418 (437)
T ss_dssp             TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES
T ss_pred             CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc
Confidence            77899999999999999997653211000      00                001112222334459999999999998


Q ss_pred             --CceEEEeecCC
Q psy6859         251 --GNKFVTISMDR  261 (261)
Q Consensus       251 --~~~l~s~~~Dg  261 (261)
                        +.+|++|+.||
T Consensus       419 ~~~~~l~s~~~dG  431 (437)
T 3gre_A          419 DETPLLVACDNSG  431 (437)
T ss_dssp             SSSEEEEEEETTS
T ss_pred             CCceEEEEEcCCc
Confidence              88999999987

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.2e-34  Score=228.73  Aligned_cols=232  Identities=18%  Similarity=0.283  Sum_probs=190.4

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      ||...|++++| .+++|++|+.||.|++||+.++  +.+..+.+|...|.+++|++  .++++++.||.|++||+.+++.
T Consensus       171 ~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~  245 (435)
T 1p22_A          171 GHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTD  245 (435)
T ss_dssp             CCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSC--CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSC
T ss_pred             CCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCC
Confidence            69999999999 5679999999999999999987  77888999999999999974  4999999999999999988765


Q ss_pred             e---eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          81 I---NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        81 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      .   ..+..+...+..  +..+++.++++    +.|+.|++||+++++.+..+..+  ...+.++.++++.    +++|+
T Consensus       246 ~~~~~~~~~~~~~v~~--~~~~~~~l~s~----~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~----l~~g~  313 (435)
T 1p22_A          246 ITLRRVLVGHRAAVNV--VDFDDKYIVSA----SGDRTIKVWNTSTCEFVRTLNGH--KRGIACLQYRDRL----VVSGS  313 (435)
T ss_dssp             CEEEEEECCCSSCEEE--EEEETTEEEEE----ETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTE----EEEEE
T ss_pred             ceeeeEecCCCCcEEE--EEeCCCEEEEE----eCCCeEEEEECCcCcEEEEEcCC--CCcEEEEEeCCCE----EEEEe
Confidence            5   334444444444  44467776665    89999999999999988888754  4578888886543    88999


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      .|+.|++||++ +++++..+. +|...|.+++|  ++++|++++.||.|++||+.++.....      .....++..+.+
T Consensus       314 ~dg~i~iwd~~-~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~  383 (435)
T 1p22_A          314 SDNTIRLWDIE-CGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA------PAGTLCLRTLVE  383 (435)
T ss_dssp             TTSCEEEEETT-TCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS------CTTTTEEEEECC
T ss_pred             CCCeEEEEECC-CCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc------cccchheeeccC
Confidence            99999999999 899999998 89999999999  788999999999999999965321000      001126778889


Q ss_pred             CccceeeeeECCCCceEEEeecCC
Q psy6859         238 NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |...|.+++|  ++++|++++.||
T Consensus       384 h~~~v~~l~~--~~~~l~s~s~Dg  405 (435)
T 1p22_A          384 HSGRVFRLQF--DEFQIVSSSHDD  405 (435)
T ss_dssp             CSSCCCCEEE--CSSCEEECCSSS
T ss_pred             CCCCeEEEEe--CCCEEEEEeCCC
Confidence            9999999999  788999999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.9e-34  Score=234.75  Aligned_cols=235  Identities=13%  Similarity=0.132  Sum_probs=193.9

Q ss_pred             CCCCCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeecccc---ceeEEEEeeC-CCEEEEEeCCCcEEEEE
Q psy6859           1 MHRSPITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLG---VIHSICTNYN-GTLLCTVASDKAMKVFD   74 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~s~~~dg~v~~wd   74 (261)
                      +|...|++++|+| ++ .+++++.|+.|++||..+.  +....+.+|..   .|.+++|+|+ +++|++++.||.|++||
T Consensus       158 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd  235 (615)
T 1pgu_A          158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF--KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD  235 (615)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB--EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred             cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc--ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence            5899999999999 65 8999999999999999877  78888999999   9999999999 99999999999999999


Q ss_pred             ccccceeeee-e---ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe-------------------
Q psy6859          75 VINFDMINMI-K---LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK-------------------  131 (261)
Q Consensus        75 ~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-------------------  131 (261)
                      +.+++.+..+ .   .+..++..+.+. ++..+++.    +.|+.|++||+++++.+..+.                   
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~----~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (615)
T 1pgu_A          236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV----GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG  310 (615)
T ss_dssp             TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE----ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT
T ss_pred             CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE----cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCC
Confidence            9999988887 4   455566666666 55555544    556666666655432211110                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy6859         132 --------------------------------------------------------------------------------  131 (261)
Q Consensus       132 --------------------------------------------------------------------------------  131 (261)
                                                                                                      
T Consensus       311 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~  390 (615)
T 1pgu_A          311 RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS  390 (615)
T ss_dssp             EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE
T ss_pred             eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy6859         132 --------------------------------------------------------------------------------  131 (261)
Q Consensus       132 --------------------------------------------------------------------------------  131 (261)
                                                                                                      
T Consensus       391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~  470 (615)
T 1pgu_A          391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ  470 (615)
T ss_dssp             TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred             CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence                                                                                            


Q ss_pred             -------------ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccC-cccCeEEEEEcC-----
Q psy6859         132 -------------LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL-HTKPVVLIKFNP-----  192 (261)
Q Consensus       132 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~-----  192 (261)
                                   ...+...+.+++|+|++.+  +++++.|+.|++||+. +++++..+. . |...|++++|+|     
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~~~~dg~i~iw~~~-~~~~~~~~~-~~h~~~v~~~~~sp~~~~~  546 (615)
T 1pgu_A          471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETY--IAAGDVMGKILLYDLQ-SREVKTSRW-AFRTSKINAISWKPAEKGA  546 (615)
T ss_dssp             EEETTEEEEEEECSSCCSSCEEEEEECTTSSE--EEEEETTSCEEEEETT-TTEEEECCS-CCCSSCEEEEEECCCC---
T ss_pred             EEECCCccccccccCCccCceEEEEECCCCCE--EEEcCCCCeEEEeeCC-CCcceeEee-cCCCCceeEEEEcCccccc
Confidence                         1112345778889999875  8888999999999998 888888886 6 999999999999     


Q ss_pred             -----CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         193 -----IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       193 -----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                           ++++|++++.||.|++||+.++              .+++..+.+|...|++++|+|+++ |++++.||
T Consensus       547 ~~~~~~~~~l~~~~~dg~i~iw~~~~~--------------~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~  605 (615)
T 1pgu_A          547 NEEEIEEDLVATGSLDTNIFIYSVKRP--------------MKIIKALNAHKDGVNNLLWETPST-LVSSGADA  605 (615)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCT--------------TCCEEETTSSTTCEEEEEEEETTE-EEEEETTS
T ss_pred             cccccCCCEEEEEcCCCcEEEEECCCC--------------ceechhhhcCccceEEEEEcCCCC-eEEecCCc
Confidence                 9999999999999999999541              267888899999999999999999 99999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-35  Score=228.93  Aligned_cols=204  Identities=11%  Similarity=0.137  Sum_probs=175.5

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEe-----eccccceeEEEEee-CCCEEEEEeCCCcEEE
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHF-----RSHLGVIHSICTNY-NGTLLCTVASDKAMKV   72 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~   72 (261)
                      ||.+.|.++.|+|  +..|++|+.|++|++||+.++  +.+..+     .+|...|.+++|++ ++++|++|+.|++|++
T Consensus       155 gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~  232 (380)
T 3iz6_a          155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG--QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL  232 (380)
T ss_dssp             CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC--CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred             CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC--cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence            7999999999998  457999999999999999987  555555     67899999999987 8899999999999999


Q ss_pred             EEcc-ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC-----cceEEEEEEeC
Q psy6859          73 FDVI-NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT-----PLTVECIHYLG  146 (261)
Q Consensus        73 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~  146 (261)
                      ||++ .++.+..+..+...+..+.++|++..++++    +.|++|++||+++++.+..+..+..     ...+.+++|+|
T Consensus       233 wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~----s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  308 (380)
T 3iz6_a          233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG----SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI  308 (380)
T ss_dssp             EETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE----CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred             EECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE----cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence            9997 456777787788888999999999887776    9999999999999988877754322     12478999999


Q ss_pred             CCCceEEEEecCCCeEEEEEccCCCccceeec---cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         147 DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD---RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       147 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ++..  +++|+.||.|++||+. .++.+..+.   .+|...|++++|+|++++|++|+.|+.|++|++..
T Consensus       309 ~g~~--l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          309 SGRL--LFAGYSNGDCYVWDTL-LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             SSSE--EEEECTTSCEEEEETT-TCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             CCCE--EEEEECCCCEEEEECC-CCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            9986  8899999999999998 777766652   27999999999999999999999999999999853

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.9e-34  Score=225.88  Aligned_cols=225  Identities=16%  Similarity=0.216  Sum_probs=179.6

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      +|...|.+++|+ ++.+++|+.||.|++||+.+.  +.+..+.+|...|.++.|  +++++++++.||.|++||+.+++.
T Consensus       197 ~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~  271 (445)
T 2ovr_B          197 GHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETG--QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC  271 (445)
T ss_dssp             CCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSC--CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE
T ss_pred             CCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCC--cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE
Confidence            577788888776 346778888888888887766  666777778888888887  566888888888888888888887


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      +..+..+..++..+.+  ++..++++    +.|+.|++||+++++.+..+..+  ...+.++.++++.    +++++.||
T Consensus       272 ~~~~~~~~~~v~~~~~--~~~~l~~~----~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~----l~~~~~dg  339 (445)
T 2ovr_B          272 LHTLQGHTNRVYSLQF--DGIHVVSG----SLDTSIRVWDVETGNCIHTLTGH--QSLTSGMELKDNI----LVSGNADS  339 (445)
T ss_dssp             EEEECCCSSCEEEEEE--CSSEEEEE----ETTSCEEEEETTTCCEEEEECCC--CSCEEEEEEETTE----EEEEETTS
T ss_pred             eEEecCCCCceEEEEE--CCCEEEEE----eCCCeEEEEECCCCCEEEEEcCC--cccEEEEEEeCCE----EEEEeCCC
Confidence            7777655555544444  66666555    88999999999999888877653  4467788876553    88999999


Q ss_pred             eEEEEEccCCCccceeeccC---cccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec--
Q psy6859         161 HVHIYDCKGNGTPLHVLDRL---HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF--  235 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--  235 (261)
                      .|++||++ +++++..+. .   |...|++++|+  +++|++++.||.|++||+.+               ++.+..+  
T Consensus       340 ~i~vwd~~-~~~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~---------------~~~~~~~~~  400 (445)
T 2ovr_B          340 TVKIWDIK-TGQCLQTLQ-GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT---------------GEFIRNLVT  400 (445)
T ss_dssp             CEEEEETT-TCCEEEEEC-STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT---------------CCEEEEEEE
T ss_pred             eEEEEECC-CCcEEEEEc-cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC---------------Cceeeeeec
Confidence            99999998 888888886 4   88899999996  57999999999999999954               4555555  


Q ss_pred             ---CCCccceeeeeECCCCceEEEeecCC
Q psy6859         236 ---AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       236 ---~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                         .+|...|++++|+|++.+|++|+.||
T Consensus       401 ~~~~~~~~~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          401 LESGGSGGVVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             CTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             cccCCCCceEEEEEecCCEEEEEEcccCC
Confidence               46889999999999999999999986

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.4e-34  Score=219.66  Aligned_cols=223  Identities=12%  Similarity=0.174  Sum_probs=171.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEE-EEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~   78 (261)
                      +|.+.|++++|+| +++|++|+.++ +++|+.+..  +......  ...+..+++.++++.+ ++++.|++|++||+.++
T Consensus        17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~   91 (355)
T 3vu4_A           17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--AHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK   91 (355)
T ss_dssp             --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--EEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--ceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC
Confidence            5889999999999 88999888765 789998865  3333332  2357888898888777 56778899999999999


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecCCcceEEEEEEeCCCCceEEEE-e
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDFTPLTVECIHYLGDAIPTAAVS-D  156 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  156 (261)
                      +.+..+..+. ++..+.+  ..+.++.+     .++.|++||+.+. +.+..+..   +  ...+++++  .. ++++ |
T Consensus        92 ~~~~~~~~~~-~v~~v~~--~~~~~~~~-----~~~~i~i~d~~~~~~~~~~~~~---~--~~~~~~s~--~~-la~~sg  155 (355)
T 3vu4_A           92 QDVSRIKVDA-PVKDLFL--SREFIVVS-----YGDVISVFKFGNPWKRITDDIR---F--GGVCEFSN--GL-LVYSNE  155 (355)
T ss_dssp             EEEEEEECSS-CEEEEEE--CSSEEEEE-----ETTEEEEEESSTTCCBSSCCEE---E--EEEEEEET--TE-EEEEES
T ss_pred             cEEEEEECCC-ceEEEEE--cCCEEEEE-----EcCEEEEEECCCCceeeEEecc---C--CceEEEEc--cE-EEEeCC
Confidence            9988887443 4444444  34444433     5889999999988 66666554   2  23345556  32 3443 7


Q ss_pred             cCCCeEEEEEccCCCc---------------c-ceeeccCcccCeEEEEEcCCCCEEEEEcCCCe-EEEeecccccccCC
Q psy6859         157 QDSSHVHIYDCKGNGT---------------P-LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGI-LEYWSGYKQEFKFP  219 (261)
Q Consensus       157 ~~d~~i~i~d~~~~~~---------------~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~  219 (261)
                      +.+|.|++||++ ++.               + +..+. +|..+|++++|+|++++|++++.|++ |++||++       
T Consensus       156 ~~~g~v~iwd~~-~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~-------  226 (355)
T 3vu4_A          156 FNLGQIHITKLQ-SSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE-------  226 (355)
T ss_dssp             SCTTCEEEEECC-C------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT-------
T ss_pred             CcCcEEEEEECC-CCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC-------
Confidence            899999999998 544               2 67787 99999999999999999999999998 9999995       


Q ss_pred             eeeeeecccccceeecC-C-CccceeeeeECCCCceEEEeecCC
Q psy6859         220 KCVHFESKLDTDLFEFA-K-NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       220 ~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                              +++++..+. + |...|++++|+|+|++|++++.||
T Consensus       227 --------~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          227 --------DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW  262 (355)
T ss_dssp             --------TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred             --------CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence                    467778887 5 999999999999999999999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-34  Score=224.37  Aligned_cols=225  Identities=12%  Similarity=0.202  Sum_probs=183.5

Q ss_pred             eEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeec-cccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859           6 ITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRS-HLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         6 v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      +.+++|++ +.+++++.|+.|++|++.++  +....+.. |...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus        96 ~~~~~~s~-~~l~~~~~d~~v~lw~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  172 (401)
T 4aez_A           96 LNLLDWSN-LNVVAVALERNVYVWNADSG--SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM  172 (401)
T ss_dssp             CBCEEECT-TSEEEEEETTEEEEEETTTC--CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEEeecC-CCEEEEECCCeEEEeeCCCC--cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe
Confidence            44567765 45778889999999999987  44444444 7899999999999999999999999999999999998888


Q ss_pred             eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-CceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEE
Q psy6859          85 KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVH  163 (261)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  163 (261)
                      ..+...+..+.+  +++.++++    +.|+.|++||++. ...+..+..  +...+.+++|+|++..  +++++.|+.|+
T Consensus       173 ~~~~~~v~~~~~--~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~--l~s~~~d~~v~  242 (401)
T 4aez_A          173 AGHQARVGCLSW--NRHVLSSG----SRSGAIHHHDVRIANHQIGTLQG--HSSEVCGLAWRSDGLQ--LASGGNDNVVQ  242 (401)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEE----ETTSEEEEEETTSSSCEEEEEEC--CSSCEEEEEECTTSSE--EEEEETTSCEE
T ss_pred             cCCCCceEEEEE--CCCEEEEE----cCCCCEEEEecccCcceeeEEcC--CCCCeeEEEEcCCCCE--EEEEeCCCeEE
Confidence            876666665555  56666555    8999999999994 455555554  4568999999999875  88999999999


Q ss_pred             EEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEc--CCCeEEEeecccccccCCeeeeeecccccceeecCCCcc
Q psy6859         164 IYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVD--KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT  240 (261)
Q Consensus       164 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (261)
                      +||++ +++++..+. .|...|.+++|+|++. ++++++  .|+.|++||+.+               ++++..+. +..
T Consensus       243 iwd~~-~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~---------------~~~~~~~~-~~~  304 (401)
T 4aez_A          243 IWDAR-SSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT---------------GARVNTVD-AGS  304 (401)
T ss_dssp             EEETT-CSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT---------------CCEEEEEE-CSS
T ss_pred             EccCC-CCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC---------------CCEEEEEe-CCC
Confidence            99999 888888887 8999999999999775 566654  799999999954               55566554 567


Q ss_pred             ceeeeeECCCCceEEEee--cCC
Q psy6859         241 YPSGLSFSPDGNKFVTIS--MDR  261 (261)
Q Consensus       241 ~v~~~~~s~~~~~l~s~~--~Dg  261 (261)
                      .|.+++|+|++++|++++  .||
T Consensus       305 ~v~~~~~s~~~~~l~~~~g~~dg  327 (401)
T 4aez_A          305 QVTSLIWSPHSKEIMSTHGFPDN  327 (401)
T ss_dssp             CEEEEEECSSSSEEEEEECTTTC
T ss_pred             cEEEEEECCCCCeEEEEeecCCC
Confidence            899999999999999953  664

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-34  Score=226.12  Aligned_cols=234  Identities=13%  Similarity=0.118  Sum_probs=189.0

Q ss_pred             eEEEEEcC-C-CeEEEecCCCeEEEEeccCCce--eeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEcccc--
Q psy6859           6 ITHVVVTK-T-DFVITASNDGHIKFWKKQEEGI--EFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINF--   78 (261)
Q Consensus         6 v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~--   78 (261)
                      ...++++| . .++++++.||.|+||++...+.  .....+.+|.+.|++++|+| ++++|++++.||.|++||+.++  
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            34577887 3 3555689999999999976431  23456788999999999999 9999999999999999999887  


Q ss_pred             -----ceeeeeeccCcceeEEEEeecC-CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          79 -----DMINMIKLDFTPLTVECIHYLG-DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        79 -----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                           +.+..+..+...+..+.+++++ ..++++    +.|+.|++||+++++.+..+....+...+.+++|+|++..  
T Consensus       117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--  190 (402)
T 2aq5_A          117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA----GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL--  190 (402)
T ss_dssp             SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE----ETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC--
T ss_pred             ccccCCceEEecCCCCeEEEEEECcCCCCEEEEE----cCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE--
Confidence                 5567777778888889999887 455554    8999999999999988877742345678999999999976  


Q ss_pred             EEEecCCCeEEEEEccCCCccceee-ccCcccC-eEEEEEcCCCCEEEEE---cCCCeEEEeecccccccCCeeeeeecc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVL-DRLHTKP-VVLIKFNPIYQVVVSV---DKAGILEYWSGYKQEFKFPKCVHFESK  227 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~  227 (261)
                      +++++.|+.|++||++ +++.+..+ . .|... +..+.|+|++++|+++   +.|+.|++||+++.             
T Consensus       191 l~~~~~d~~i~iwd~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~-------------  255 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPR-KGTVVAEKDR-PHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL-------------  255 (402)
T ss_dssp             EEEEETTSEEEEEETT-TTEEEEEEEC-SSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC-------------
T ss_pred             EEEEecCCcEEEEeCC-CCceeeeecc-CCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc-------------
Confidence            8889999999999999 88888887 5 67665 8999999999999999   79999999999642             


Q ss_pred             cccceeec-CCCccceeeeeECCCCceEEEee-cCC
Q psy6859         228 LDTDLFEF-AKNKTYPSGLSFSPDGNKFVTIS-MDR  261 (261)
Q Consensus       228 ~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~-~Dg  261 (261)
                       ..++... ..|...+.+++|+|++++|++++ .||
T Consensus       256 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg  290 (402)
T 2aq5_A          256 -EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS  290 (402)
T ss_dssp             -SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS
T ss_pred             -cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC
Confidence             1112222 24677899999999999997544 564

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=8.7e-34  Score=223.82  Aligned_cols=225  Identities=15%  Similarity=0.236  Sum_probs=189.9

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      +|...|+++++ .++++++|+.||.|++||..+.  +....+.+|.+.|.+++|  ++++|++|+.||.|++||+.+++.
T Consensus       131 ~~~~~v~~~~~-d~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          131 ETSKGVYCLQY-DDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             SSCCCEEEEEC-CSSEEEEEESSSCEEEEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             CCCCcEEEEEE-CCCEEEEEeCCCeEEEEeCCCC--eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            36678999887 4779999999999999999887  788889999999999998  678999999999999999999999


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE-EeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM-IKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      +..+..+...+..+.+  +++.++++    +.|+.|++||+++++.... .....+...+.+++++++.    +++++.|
T Consensus       206 ~~~~~~h~~~v~~l~~--~~~~l~s~----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----l~s~~~d  275 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRF--NNGMMVTC----SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY----IVSASGD  275 (435)
T ss_dssp             EEEECCCCSCEEEEEC--CTTEEEEE----ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTE----EEEEETT
T ss_pred             EEEEcCCCCcEEEEEE--cCCEEEEe----eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCE----EEEEeCC
Confidence            8888876666555554  45555554    8999999999998765532 2233455688899984433    8899999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      +.|++||++ +++++..+. .|...|.++.++  +++|++++.||.|++||++               +++++..+.+|.
T Consensus       276 g~i~vwd~~-~~~~~~~~~-~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~---------------~~~~~~~~~~h~  336 (435)
T 1p22_A          276 RTIKVWNTS-TCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE---------------CGACLRVLEGHE  336 (435)
T ss_dssp             SEEEEEETT-TCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETT---------------TCCEEEEECCCS
T ss_pred             CeEEEEECC-cCcEEEEEc-CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECC---------------CCCEEEEEeCCc
Confidence            999999999 889999998 899999999984  6799999999999999995               467888899999


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..|.+++|  ++++|++|+.||
T Consensus       337 ~~v~~~~~--~~~~l~sg~~dg  356 (435)
T 1p22_A          337 ELVRCIRF--DNKRIVSGAYDG  356 (435)
T ss_dssp             SCEEEEEC--CSSEEEEEETTS
T ss_pred             CcEEEEEe--cCCEEEEEeCCC
Confidence            99999999  788999999986

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.5e-34  Score=220.29  Aligned_cols=205  Identities=8%  Similarity=0.035  Sum_probs=162.5

Q ss_pred             CCCCeEEEEEcC-CCeEE--EecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           2 HRSPITHVVVTK-TDFVI--TASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~--s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      |...+.+++|+| +++++  +++.|++|+|||+.+.  +++..+. |.+.|.+++|+||++++++++.+ .+++|+..++
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~--~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~  207 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL--TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTG  207 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT--EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTC
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC--cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccC
Confidence            445688999999 88765  5567999999999987  6777776 77899999999999999998855 5667777777


Q ss_pred             ceeeee--eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCcee--eEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          79 DMINMI--KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI--NMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        79 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      +.+...  ..+...+..+.+++++..++++...++....+.+|++......  .......+...|.+++|+|++.+  ++
T Consensus       208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~--la  285 (365)
T 4h5i_A          208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL--AV  285 (365)
T ss_dssp             CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE--EE
T ss_pred             cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc--eE
Confidence            655433  2345567778889999888776222222237888998776432  23334445668999999999986  89


Q ss_pred             EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      +|+.|+.|+|||++ +++++..+..+|..+|++++|+|||++||+++.|++|+|||+..
T Consensus       286 sgs~D~~V~iwd~~-~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          286 LASNDNSIALVKLK-DLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEETTSCEEEEETT-TTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEcCCCEEEEEECC-CCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999 88988876338999999999999999999999999999999964

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.7e-34  Score=214.16  Aligned_cols=200  Identities=21%  Similarity=0.288  Sum_probs=177.9

Q ss_pred             eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859          37 EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRV  116 (261)
Q Consensus        37 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i  116 (261)
                      .....+.+|.+.|++++|+|++++|++++.||.|++|++.+++....+..+...+..+.++++++.++++    +.|+.|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~d~~i   89 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA----SDDKTL   89 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEE----CCCCEE
Confidence            5677889999999999999999999999999999999999999888888888888889999998877776    899999


Q ss_pred             EEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCE
Q psy6859         117 HIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQV  196 (261)
Q Consensus       117 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  196 (261)
                      ++||+++++.+..+..+  ...+.++.|+|++..  +++++.|+.|++||++ +++.+..+. .|..+|.+++|+|++++
T Consensus        90 ~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~--l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~  163 (312)
T 4ery_A           90 KIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNL--IVSGSFDESVRIWDVK-TGKCLKTLP-AHSDPVSAVHFNRDGSL  163 (312)
T ss_dssp             EEEETTTCCEEEEEECC--SSCEEEEEECSSSSE--EEEEETTSCEEEEETT-TCCEEEEEC-CCSSCEEEEEECTTSSE
T ss_pred             EEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCE--EEEEeCCCcEEEEECC-CCEEEEEec-CCCCcEEEEEEcCCCCE
Confidence            99999999888887754  457899999999875  8899999999999999 888888897 89999999999999999


Q ss_pred             EEEEcCCCeEEEeecccccccCCeeeeeecccccceeec-CCCccceeeeeECCCCceEEEeecCC
Q psy6859         197 VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF-AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       197 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |++++.||.|++||+++               ++.+..+ ..+...+..++|+|++++|++++.||
T Consensus       164 l~~~~~d~~i~~wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
T 4ery_A          164 IVSSSYDGLCRIWDTAS---------------GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN  214 (312)
T ss_dssp             EEEEETTSCEEEEETTT---------------CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             EEEEeCCCcEEEEECCC---------------CceeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence            99999999999999954               4444444 34667899999999999999999886

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7e-34  Score=213.43  Aligned_cols=203  Identities=15%  Similarity=0.235  Sum_probs=163.4

Q ss_pred             EEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc--cceeeeeeccCcceeEEEEeec--CCceeeeeeecCCCCe
Q psy6859          40 KHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN--FDMINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQDSSR  115 (261)
Q Consensus        40 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~d~~  115 (261)
                      ..+.+|.+.|++++|+|++++|++++.|++|++||+..  .+.+..+..+..++..+.+.++  ++.++++    +.|++
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~----s~D~~   78 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC----SYDGK   78 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE----ETTTE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEE----cCCCE
Confidence            45678999999999999999999999999999999974  3567777778778888887653  5666555    89999


Q ss_pred             EEEEEcCCCceeeEEeecCCcceEEEEEEeCC--CCceEEEEecCCCeEEEEEccCCCc--cceeeccCcccCeEEEEEc
Q psy6859         116 VHIYDCKGNDMINMIKLDFTPLTVECIHYLGD--AIPTAAVSDQDSSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFN  191 (261)
Q Consensus       116 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~  191 (261)
                      |++||+++++.........+...+.+++|+|+  +.  ++++++.|+.|++||++ ...  ....+. +|...|.+++|+
T Consensus        79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~-~~~~~~~~~~~-~h~~~v~~~~~~  154 (297)
T 2pm7_B           79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFK-ENGTTSPIIID-AHAIGVNSASWA  154 (297)
T ss_dssp             EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBC-SSSCBCCEEEE-CCSSCEEEEEEC
T ss_pred             EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEec-CCCceeeeeee-cccCccceEeec
Confidence            99999998753333333345668999999997  54  38899999999999998 442  234565 899999999999


Q ss_pred             CC-------------CCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCC---ceEE
Q psy6859         192 PI-------------YQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDG---NKFV  255 (261)
Q Consensus       192 ~~-------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~  255 (261)
                      |+             +++|++++.|+.|++||++++.           ........+.+|...|.+++|+|++   ++||
T Consensus       155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~-----------~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la  223 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA  223 (297)
T ss_dssp             CCC------------CCEEEEEETTSCEEEEEEETTT-----------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC-----------ceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence            97             5799999999999999986421           1122456788999999999999984   8999


Q ss_pred             EeecCC
Q psy6859         256 TISMDR  261 (261)
Q Consensus       256 s~~~Dg  261 (261)
                      +++.||
T Consensus       224 s~s~D~  229 (297)
T 2pm7_B          224 SVSQDR  229 (297)
T ss_dssp             EEETTS
T ss_pred             EEECCC
Confidence            999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.5e-34  Score=234.38  Aligned_cols=233  Identities=14%  Similarity=0.123  Sum_probs=199.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCC--ceeeeEEeeccccc-eeEEEEee--CCCEEEEEeCCCcEEEEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEE--GIEFVKHFRSHLGV-IHSICTNY--NGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~s~~~dg~v~~wd   74 (261)
                      +|.+.|++++|+| +++|++++ ++.|++|++.+.  ..+....+.+|... |.+++|+|  ++++|++++.||.|++||
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence            4889999999999 88999888 789999999864  11466788999999 99999999  999999999999999999


Q ss_pred             cccc--------ceeeeeeccCcceeEEEEeecCCceeeeeeecCCC----CeEEEEEcCCCceeeEEeecCCcceEEEE
Q psy6859          75 VINF--------DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS----SRVHIYDCKGNDMINMIKLDFTPLTVECI  142 (261)
Q Consensus        75 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  142 (261)
                      +.++        +....+..+..++..+.+++++..++++    +.+    +.|.+||  .++.+..+..  +...+.++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~~~~~~~~v~~~d--~~~~~~~~~~--~~~~v~~~  166 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV----GEGRDNFGVFISWD--SGNSLGEVSG--HSQRINAC  166 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE----ECCSSCSEEEEETT--TCCEEEECCS--CSSCEEEE
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe----ccCCCCccEEEEEE--CCCcceeeec--CCccEEEE
Confidence            9754        5666777677788899999999887776    444    6888888  4555655554  55689999


Q ss_pred             EEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCccc---CeEEEEEcCC-CCEEEEEcCCCeEEEeecccccccC
Q psy6859         143 HYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTK---PVVLIKFNPI-YQVVVSVDKAGILEYWSGYKQEFKF  218 (261)
Q Consensus       143 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~  218 (261)
                      .|+|++.. ++++++.|+.|++||+. +++++..+. .|..   .|++++|+|+ +++|++++.||.|++||+++     
T Consensus       167 ~~~~~~~~-~l~~~~~d~~v~vwd~~-~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----  238 (615)
T 1pgu_A          167 HLKQSRPM-RSMTVGDDGSVVFYQGP-PFKFSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-----  238 (615)
T ss_dssp             EECSSSSC-EEEEEETTTEEEEEETT-TBEEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-----
T ss_pred             EECCCCCc-EEEEEeCCCcEEEEeCC-Ccceeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC-----
Confidence            99999874 37888899999999998 888999997 8988   9999999999 99999999999999999954     


Q ss_pred             Ceeeeeecccccceeec-C---CCccceeeeeECCCCceEEEeecCC
Q psy6859         219 PKCVHFESKLDTDLFEF-A---KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       219 ~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                ++.+..+ .   .|...|.+++|+ ++++|++++.||
T Consensus       239 ----------~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~  274 (615)
T 1pgu_A          239 ----------GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA  274 (615)
T ss_dssp             ----------CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred             ----------CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence                      5667777 5   899999999999 999999999886

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.8e-34  Score=217.45  Aligned_cols=204  Identities=12%  Similarity=0.174  Sum_probs=160.3

Q ss_pred             CCCCCeEEEEEcC---CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC--CCEEEEEeCCCcEEEEEc
Q psy6859           1 MHRSPITHVVVTK---TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN--GTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~v~~wd~   75 (261)
                      ||.++|++++|+|   +++|++|+.|++|++||+.++..+....+.+|...|.+++|+|+  +.+|++++.|++|++||+
T Consensus        55 gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~  134 (316)
T 3bg1_A           55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY  134 (316)
T ss_dssp             CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEE
T ss_pred             CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEec
Confidence            7999999999975   68999999999999999987644566778899999999999997  789999999999999999


Q ss_pred             cccce---eeeeeccCcceeEEEEeecC-----------------CceeeeeeecCCCCeEEEEEcCCCc---eeeEEee
Q psy6859          76 INFDM---INMIKLDFTPLTVECIHYLG-----------------DAIPTAAVSDQDSSRVHIYDCKGND---MINMIKL  132 (261)
Q Consensus        76 ~~~~~---~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~s~~~d~~i~i~d~~~~~---~~~~~~~  132 (261)
                      ..+..   ...+..+...+..+.+.++.                 ..+    ++++.|+.|++||++...   .+..+. 
T Consensus       135 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~sgs~D~~v~lWd~~~~~~~~~~~~l~-  209 (316)
T 3bg1_A          135 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRF----ASGGCDNLIKLWKEEEDGQWKEEQKLE-  209 (316)
T ss_dssp             CSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBE----ECCBTTSBCCEEEECTTSCEEEEECCB-
T ss_pred             CCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceE----EEecCCCeEEEEEeCCCCccceeeecc-
Confidence            86532   23333344445555665542                 233    345899999999997552   333333 


Q ss_pred             cCCcceEEEEEEeCCCC--ceEEEEecCCCeEEEEEccCCC---c-cceeeccCcccCeEEEEEcCCCCEEEEEcCCCeE
Q psy6859         133 DFTPLTVECIHYLGDAI--PTAAVSDQDSSHVHIYDCKGNG---T-PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGIL  206 (261)
Q Consensus       133 ~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~---~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  206 (261)
                       .+...|.+++|+|++.  ..++++++.|++|++||++ ..   . ....+. .|...|.+++|+|++++|++++.|+.|
T Consensus       210 -~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~-~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~las~~~D~~v  286 (316)
T 3bg1_A          210 -AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD-DASSNTWSPKLLH-KFNDVVWHVSWSITANILAVSGGDNKV  286 (316)
T ss_dssp             -CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS-STTCCCCBCCEEE-ECSSCEEEEEECTTTCCEEEEESSSCE
T ss_pred             -cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc-Cccccchhhhhhh-cCCCcEEEEEEcCCCCEEEEEcCCCeE
Confidence             4566899999999861  1248999999999999997 42   1 233444 688999999999999999999999999


Q ss_pred             EEeecc
Q psy6859         207 EYWSGY  212 (261)
Q Consensus       207 ~iwd~~  212 (261)
                      ++|+..
T Consensus       287 ~lw~~~  292 (316)
T 3bg1_A          287 TLWKES  292 (316)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=223.06  Aligned_cols=234  Identities=12%  Similarity=-0.020  Sum_probs=187.6

Q ss_pred             CCCCCeEEEEEcC-CCeE-EEecCCCeEEEEecc--CCceeeeEEee--ccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           1 MHRSPITHVVVTK-TDFV-ITASNDGHIKFWKKQ--EEGIEFVKHFR--SHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      +|.+.|++++|+| +++| ++|+.||.|++|++.  ++  +.+..+.  .|...|.+++|+|++++|++++.+|.+++|+
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            4677899999999 8885 899999999999998  55  5555554  5678899999999999999999999999999


Q ss_pred             ccccceee----eeeccCcceeEEEEeec---CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC
Q psy6859          75 VINFDMIN----MIKLDFTPLTVECIHYL---GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        75 ~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                      +.+++...    .+..+...+..+.++++   +..++++    +.|+.|++||+++++.+..+.. .+...+.+++|+ +
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~----~~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~s-d  251 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS----DRDEHIKISHYPQCFIVDKWLF-GHKHFVSSICCG-K  251 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE----ETTSCEEEEEESCTTCEEEECC-CCSSCEEEEEEC-S
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE----cCCCcEEEEECCCCceeeeeec-CCCCceEEEEEC-C
Confidence            98877554    56667777888899998   7666665    8999999999999887766432 245689999999 8


Q ss_pred             CCceEEEEecCCCeEEEEEccCCCccceeecc------------------------CcccCeEEEEEcCCCCEEEEEc-C
Q psy6859         148 AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR------------------------LHTKPVVLIKFNPIYQVVVSVD-K  202 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------~~~~~v~~~~~~~~~~~l~~~~-~  202 (261)
                      +.+  +++++.|+.|++||++ +++++..+..                        .....|.+++|+|++++|++++ .
T Consensus       252 ~~~--l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~  328 (450)
T 2vdu_B          252 DYL--LLSAGGDDKIFAWDWK-TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA  328 (450)
T ss_dssp             TTE--EEEEESSSEEEEEETT-TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCE--EEEEeCCCeEEEEECC-CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence            775  8899999999999999 8887777641                        1235689999999999999888 8


Q ss_pred             CCeEEEeec--ccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         203 AGILEYWSG--YKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       203 dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      |+.|++|++  ..+            ...+.+..+..| ..|.+++|+|++.++++++
T Consensus       329 d~~i~iw~~~~~~~------------~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          329 TKCIIILEMSEKQK------------GDLALKQIITFP-YNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             CSEEEEEEECSSST------------TCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred             CCeEEEEEeccCCC------------CceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence            999999998  321            112455666777 8899999999654444444

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.1e-33  Score=212.86  Aligned_cols=200  Identities=13%  Similarity=0.152  Sum_probs=161.1

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||...|++++|+| +.++++|+.|++|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|++|++||+....
T Consensus        74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~  151 (343)
T 2xzm_R           74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC  151 (343)
T ss_dssp             CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc
Confidence            7999999999999 899999999999999999987  7788899999999999999999999999999999999997433


Q ss_pred             eeeeee--ccCcceeEEEEeecC----------CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC
Q psy6859          80 MINMIK--LDFTPLTVECIHYLG----------DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        80 ~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                      ......  .+...+..+.+++.+          ..++    +++.|+.|++||. ..+....+..  +...+.+++|+|+
T Consensus       152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~----s~~~d~~i~iwd~-~~~~~~~~~~--h~~~v~~~~~s~~  224 (343)
T 2xzm_R          152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA----SVGWDGRLKVWNT-NFQIRYTFKA--HESNVNHLSISPN  224 (343)
T ss_dssp             EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE----EEETTSEEEEEET-TTEEEEEEEC--CSSCEEEEEECTT
T ss_pred             eeeeecccCCCceeeeeeeccccccccccCCCCCEEE----EEcCCCEEEEEcC-CCceeEEEcC--ccccceEEEECCC
Confidence            222211  344456677777665          3343    3489999999994 4445555544  4568999999999


Q ss_pred             CCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         148 AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      +.+  +++++.|+.|++||++....+...+  .+...|.+++|+|++++|+++ .|+.|++||+.+.
T Consensus       225 g~~--l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~  286 (343)
T 2xzm_R          225 GKY--IATGGKDKKLLIWDILNLTYPQREF--DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ  286 (343)
T ss_dssp             SSE--EEEEETTCEEEEEESSCCSSCSEEE--ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred             CCE--EEEEcCCCeEEEEECCCCcccceee--cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence            986  8999999999999996355556666  356679999999999988766 4778999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-32  Score=217.92  Aligned_cols=223  Identities=17%  Similarity=0.287  Sum_probs=189.6

Q ss_pred             CCCCCe-EEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPI-THVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v-~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.+.| +++.++ +++|++|+.||+|++||+.++  +.+..+.+|.+.|.+++|+  ++++++++.||+|++||+.+++
T Consensus       116 ~h~~~v~~~~~~~-g~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~  190 (445)
T 2ovr_B          116 GHDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE  190 (445)
T ss_dssp             CSTTSCEEEEEEE-TTEEEEEETTSCEEEEETTTC--CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE
T ss_pred             ccCCCcEEEEEEc-CCEEEEEECCCcEEEEECCCC--cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc
Confidence            688875 555443 789999999999999999987  7888999999999999997  5599999999999999999999


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .+..+..+..++..+.+  +++.++++    +.|+.|++||+++++.+..+..  +...+.++.+++  ..  +++++.|
T Consensus       191 ~~~~~~~h~~~v~~~~~--~~~~l~s~----s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~~~--~~--l~~~~~d  258 (445)
T 2ovr_B          191 CIHTLYGHTSTVRCMHL--HEKRVVSG----SRDATLRVWDIETGQCLHVLMG--HVAAVRCVQYDG--RR--VVSGAYD  258 (445)
T ss_dssp             EEEEECCCSSCEEEEEE--ETTEEEEE----ETTSEEEEEESSSCCEEEEEEC--CSSCEEEEEECS--SC--EEEEETT
T ss_pred             EEEEECCCCCcEEEEEe--cCCEEEEE----eCCCEEEEEECCCCcEEEEEcC--CcccEEEEEECC--CE--EEEEcCC
Confidence            98888877666655554  56666555    8999999999999988888775  445788888843  33  8889999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      +.|++||++ +++++..+. .|...|.++.|  ++.+|++++.|+.|++||+++               ++.+..+.+|.
T Consensus       259 g~i~iwd~~-~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~---------------~~~~~~~~~~~  319 (445)
T 2ovr_B          259 FMVKVWDPE-TETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET---------------GNCIHTLTGHQ  319 (445)
T ss_dssp             SCEEEEEGG-GTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT---------------CCEEEEECCCC
T ss_pred             CEEEEEECC-CCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC---------------CCEEEEEcCCc
Confidence            999999999 889999997 89999999999  788999999999999999954               67788888999


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..+.++.+  ++++|++++.||
T Consensus       320 ~~v~~~~~--~~~~l~~~~~dg  339 (445)
T 2ovr_B          320 SLTSGMEL--KDNILVSGNADS  339 (445)
T ss_dssp             SCEEEEEE--ETTEEEEEETTS
T ss_pred             ccEEEEEE--eCCEEEEEeCCC
Confidence            99988887  467999999886

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-33  Score=220.32  Aligned_cols=233  Identities=15%  Similarity=0.081  Sum_probs=183.2

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc-eeeeEEee-------------------------------------
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG-IEFVKHFR-------------------------------------   43 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~-------------------------------------   43 (261)
                      ..++++++|+| +++|+++ .++.|++||+.++. .+.+..+.                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            46899999999 7755554 57899999998763 01333333                                     


Q ss_pred             -----------------ccccceeEEEEeeCCCEE-EEEeCCCcEEEEEcc--ccceeeeeec--cCcceeEEEEeecCC
Q psy6859          44 -----------------SHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVI--NFDMINMIKL--DFTPLTVECIHYLGD  101 (261)
Q Consensus        44 -----------------~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~--~~~~~~~~~~--~~~~~~~~~~~~~~~  101 (261)
                                       +|.+.|.+++|+|++++| ++++.||.|++||+.  +++.+..+..  +...+..+.+++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                             233479999999999996 899999999999999  7888777753  345567888888888


Q ss_pred             ceeeeeeecCCCCeEEEEEcCCCceee----EEeecCCcceEEEEEEeCC---CCceEEEEecCCCeEEEEEccCCCccc
Q psy6859         102 AIPTAAVSDQDSSRVHIYDCKGNDMIN----MIKLDFTPLTVECIHYLGD---AIPTAAVSDQDSSHVHIYDCKGNGTPL  174 (261)
Q Consensus       102 ~~~~~~~s~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~~~~~  174 (261)
                      .++++    +.++.+.+|++.+++...    .+..  +...+.+++|+|+   +.+  +++++.|+.|++||++ +++.+
T Consensus       163 ~l~~~----~~~g~v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~--l~s~~~d~~i~vwd~~-~~~~~  233 (450)
T 2vdu_B          163 TVIIA----DKFGDVYSIDINSIPEEKFTQEPILG--HVSMLTDVHLIKDSDGHQF--IITSDRDEHIKISHYP-QCFIV  233 (450)
T ss_dssp             EEEEE----ETTSEEEEEETTSCCCSSCCCCCSEE--CSSCEEEEEEEECTTSCEE--EEEEETTSCEEEEEES-CTTCE
T ss_pred             EEEEE----eCCCcEEEEecCCcccccccceeeec--ccCceEEEEEcCCCCCCcE--EEEEcCCCcEEEEECC-CCcee
Confidence            77776    789999999998876543    4443  4457999999999   654  8899999999999998 78777


Q ss_pred             eeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC------------------
Q psy6859         175 HVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA------------------  236 (261)
Q Consensus       175 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  236 (261)
                      ..+..+|...|++++|+ ++++|++++.|+.|++||++++               +++..+.                  
T Consensus       234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~  297 (450)
T 2vdu_B          234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---------------KNLSTFDYNSLIKPYLNDQHLAPPR  297 (450)
T ss_dssp             EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC---------------CEEEEEECHHHHGGGCCTTSBC---
T ss_pred             eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---------------cEeeeecchhhhhhhhhhccccccc
Confidence            77333899999999999 9999999999999999999653               2222222                  


Q ss_pred             -------CCccceeeeeECCCCceEEEee-cCC
Q psy6859         237 -------KNKTYPSGLSFSPDGNKFVTIS-MDR  261 (261)
Q Consensus       237 -------~~~~~v~~~~~s~~~~~l~s~~-~Dg  261 (261)
                             .....|.+++|+|++++|++++ .|+
T Consensus       298 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~  330 (450)
T 2vdu_B          298 FQNENNDIIEFAVSKIIKSKNLPFVAFFVEATK  330 (450)
T ss_dssp             -------CBCCCEEEEEECSSSSEEEEEETTCS
T ss_pred             ccccccccceEEEEEEEEeCCCCEEEEEECCCC
Confidence                   2345789999999999999998 553

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=221.66  Aligned_cols=237  Identities=13%  Similarity=0.105  Sum_probs=178.2

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecccc-----ceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLG-----VIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      +|.+.|++++||| |.+||+++.||.|++|+.+.    ++..+. |..     .|.+++|+|||++|++|+.||+|++||
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS  157 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence            4678899999999 99999999999999999543    556666 665     499999999999999999999999999


Q ss_pred             ccccce-------eeeee----ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCcee---eEEeecCCcceEE
Q psy6859          75 VINFDM-------INMIK----LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI---NMIKLDFTPLTVE  140 (261)
Q Consensus        75 ~~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~  140 (261)
                      +.++..       +..++    .+...+..+.++|++  +++.    +.|+.|++||+.++...   ..+.. .+...|.
T Consensus       158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laas----s~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~  230 (588)
T 2j04_A          158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAA----LSNNSVFSMTVSASSHQPVSRMIQN-ASRRKIT  230 (588)
T ss_dssp             CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEE----ETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCC
T ss_pred             CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEE----eCCCeEEEEECCCCccccceeeecc-cccCcEE
Confidence            988753       45553    334567778888877  4444    78999999999987742   34432 2446789


Q ss_pred             EEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEE--cCCCCEEEEEcCCCeEEEeecccccccC
Q psy6859         141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKF--NPIYQVVVSVDKAGILEYWSGYKQEFKF  218 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~  218 (261)
                      +++|+ + ..  +++++ ++.|++||+. +++...... +|...+.+++|  +|+++.|+++++||+ ++|..+.-.+..
T Consensus       231 svaFs-g-~~--LASa~-~~tIkLWd~~-~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~sp  302 (588)
T 2j04_A          231 DLKIV-D-YK--VVLTC-PGYVHKIDLK-NYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTA  302 (588)
T ss_dssp             CEEEE-T-TE--EEEEC-SSEEEEEETT-TTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEEC
T ss_pred             EEEEE-C-CE--EEEEe-CCeEEEEECC-CCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECC
Confidence            99999 3 32  66666 6999999998 666533332 79999999999  999999999999999 999975321111


Q ss_pred             Ce---------eeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         219 PK---------CVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       219 ~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ..         ...|+ ..+..+..+.+ ...|++++|||||+.+|+++.
T Consensus       303 d~~l~a~~d~~v~lW~-~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          303 DNIIAPYLEKKFKKWS-TIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             CCSSHHHHHHHHHHTT-TTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             CceEEEEcCCEEEEEE-CCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            10         01111 12233444444 667999999999999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.3e-33  Score=212.15  Aligned_cols=207  Identities=13%  Similarity=0.150  Sum_probs=170.0

Q ss_pred             CCCCCeEEEEEcC---CCeEEEecCCCeEEEEeccCCce-------eeeEEeeccccceeEEEEeeC--CCEEEEEeCCC
Q psy6859           1 MHRSPITHVVVTK---TDFVITASNDGHIKFWKKQEEGI-------EFVKHFRSHLGVIHSICTNYN--GTLLCTVASDK   68 (261)
Q Consensus         1 gH~~~v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg   68 (261)
                      +|..+|++++|+|   +++|++|+.||.|++||+.....       +....+..|...|.+++|+|+  +++|++++.||
T Consensus        55 ~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  134 (351)
T 3f3f_A           55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG  134 (351)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC
T ss_pred             cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC
Confidence            6899999999998   68999999999999999987421       557778889999999999999  99999999999


Q ss_pred             cEEEEEccccceeeeee-------------ccCcceeEEEEeec---CCceeeeeeecCCCCeEEEEEcCCCceeeEEee
Q psy6859          69 AMKVFDVINFDMINMIK-------------LDFTPLTVECIHYL---GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL  132 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~~~-------------~~~~~~~~~~~~~~---~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~  132 (261)
                      .|++||+.+++.+..+.             .+......+.+.++   +..+++.    +.++.+.+|+...++.......
T Consensus       135 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~  210 (351)
T 3f3f_A          135 ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS----ALEQAIIYQRGKDGKLHVAAKL  210 (351)
T ss_dssp             EEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE----ETTEEEEEEECTTSCEEEEEEC
T ss_pred             cEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe----cCCCcEEEEccCCCceeeeeec
Confidence            99999998877655443             23344566667665   5555554    7899998888887766445555


Q ss_pred             cCCcceEEEEEEeCCCCc--eEEEEecCCCeEEEEEccCCC---------------------------------------
Q psy6859         133 DFTPLTVECIHYLGDAIP--TAAVSDQDSSHVHIYDCKGNG---------------------------------------  171 (261)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~---------------------------------------  171 (261)
                      ..+...+.+++|+|++..  .++++++.|+.|++||++ .+                                       
T Consensus       211 ~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (351)
T 3f3f_A          211 PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT-EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE  289 (351)
T ss_dssp             CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE-ECC--------------------------------------
T ss_pred             CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC-CCcCccccCCcccceeccCCCcccccccccccccccceeee
Confidence            556778999999999732  348899999999999998 43                                       


Q ss_pred             -------ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         172 -------TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       172 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                             +++..+. +|...|++++|+|++++|++++.||.|++||+.+
T Consensus       290 ~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          290 LQSNLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             -CCSEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             ecccccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence                   4566666 8999999999999999999999999999999964

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=216.40  Aligned_cols=216  Identities=7%  Similarity=0.027  Sum_probs=166.9

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc---------ccceeeee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI---------NFDMINMI   84 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~---------~~~~~~~~   84 (261)
                      +.++++|+.||+|++||+.++  +.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +++.+..+
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~--~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~  120 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDS--KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI  120 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSS--SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCcEEEEECCCC--cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence            568999999999999999887  5555555  467888899988   9999999999999765         34434444


Q ss_pred             e-ccCcceeEEEEee--cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          85 K-LDFTPLTVECIHY--LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        85 ~-~~~~~~~~~~~~~--~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      . .+..++..+.+++  +++.++++    +.|+.|++||+++++.+.....+ +...+.+++|+|++..  +++|+.|+.
T Consensus       121 ~~~~~~~v~~~~~~~~~~~~~l~s~----s~dg~i~~wd~~~~~~~~~~~~~-~~~~i~~~~~~pdg~~--lasg~~dg~  193 (343)
T 3lrv_A          121 EVDSANEIIYMYGHNEVNTEYFIWA----DNRGTIGFQSYEDDSQYIVHSAK-SDVEYSSGVLHKDSLL--LALYSPDGI  193 (343)
T ss_dssp             ECCCSSCEEEEECCC---CCEEEEE----ETTCCEEEEESSSSCEEEEECCC-SSCCCCEEEECTTSCE--EEEECTTSC
T ss_pred             ecCCCCCEEEEEcCCCCCCCEEEEE----eCCCcEEEEECCCCcEEEEEecC-CCCceEEEEECCCCCE--EEEEcCCCE
Confidence            4 2334577778888  77777666    89999999999999876555433 3446899999999975  889999999


Q ss_pred             EEEEEccCCCccc-eeeccC-cccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC---
Q psy6859         162 VHIYDCKGNGTPL-HVLDRL-HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA---  236 (261)
Q Consensus       162 i~i~d~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---  236 (261)
                      |++||++ +++.+ ..+. . |..+|++++|+|++.+|++++ |+.|++||+++               .+.+..+.   
T Consensus       194 i~iwd~~-~~~~~~~~~~-~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~---------------~~~~~~~~~~~  255 (343)
T 3lrv_A          194 LDVYNLS-SPDQASSRFP-VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK---------------DVGTLAYPTYT  255 (343)
T ss_dssp             EEEEESS-CTTSCCEECC-CCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS---------------STTCBSSCCCB
T ss_pred             EEEEECC-CCCCCccEEe-ccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC---------------CCcceeecccc
Confidence            9999999 77776 7787 6 999999999999999999999 55999999965               33333322   


Q ss_pred             CCcccee--eeeECCCCceEEEeec-CC
Q psy6859         237 KNKTYPS--GLSFSPDGNKFVTISM-DR  261 (261)
Q Consensus       237 ~~~~~v~--~~~~s~~~~~l~s~~~-Dg  261 (261)
                      .|...+.  +++|+|+|++|++++. |+
T Consensus       256 ~~~~~~~~~~~~~~~~g~~l~~~s~~d~  283 (343)
T 3lrv_A          256 IPEFKTGTVTYDIDDSGKNMIAYSNESN  283 (343)
T ss_dssp             C-----CCEEEEECTTSSEEEEEETTTT
T ss_pred             cccccccceEEEECCCCCEEEEecCCCC
Confidence            2444554  5999999999999876 53

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-33  Score=220.02  Aligned_cols=226  Identities=8%  Similarity=0.013  Sum_probs=175.6

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCC-----------------------------ceeeeEEeeccccceeEE
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEE-----------------------------GIEFVKHFRSHLGVIHSI   52 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~-----------------------------~~~~~~~~~~~~~~v~~~   52 (261)
                      ...|.+++|+| |+++|+++.|++|+  +....                             .......+ .|...|.++
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~~~~V~~v   91 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QPVCYPRVC   91 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SCSCCEEEE
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CCCCcEEEE
Confidence            35789999999 99999999999995  32221                             00111111 357889999


Q ss_pred             EEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCc-----ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce-
Q psy6859          53 CTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFT-----PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM-  126 (261)
Q Consensus        53 ~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-  126 (261)
                      +|+|+|++|++++.||.|++||...  ++..+. +..     .+..+.++|+++.++++    +.||+|++||+.++.. 
T Consensus        92 awSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg----s~DGtVkIWd~~~~~l~  164 (588)
T 2j04_A           92 KPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG----NEDGELQFFSIRKNSEN  164 (588)
T ss_dssp             EECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE----ETTSEEEEEECCCCTTT
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEE----cCCCEEEEEECCCCccc
Confidence            9999999999999999999999544  555555 443     38889999999998887    9999999999998753 


Q ss_pred             ------eeEEee--cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc---ceeeccCcccCeEEEEEcCCCC
Q psy6859         127 ------INMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP---LHVLDRLHTKPVVLIKFNPIYQ  195 (261)
Q Consensus       127 ------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~  195 (261)
                            +..+..  ..+...|.+++|+|++    +++++.|+.|++||+. .+..   .+++..+|...|.+++|+  ++
T Consensus       165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg----Laass~D~tVrlWd~~-~~~~~~~~~tL~~~h~~~V~svaFs--g~  237 (588)
T 2j04_A          165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV----LVAALSNNSVFSMTVS-ASSHQPVSRMIQNASRRKITDLKIV--DY  237 (588)
T ss_dssp             CCCCEEEEEEECSCTTCCCCEEEEEEETTE----EEEEETTCCEEEECCC-SSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred             cccceeeeeeecccccccccEEEEEEcCCc----EEEEeCCCeEEEEECC-CCccccceeeecccccCcEEEEEEE--CC
Confidence                  455532  2245689999999998    5566779999999998 5553   345632688899999999  68


Q ss_pred             EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeE--CCCCceEEEeecCC
Q psy6859         196 VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSF--SPDGNKFVTISMDR  261 (261)
Q Consensus       196 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~Dg  261 (261)
                      .||+++ ++.|++||+.+               ++......+|...|.+++|  +||+..|+++++||
T Consensus       238 ~LASa~-~~tIkLWd~~~---------------~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG  289 (588)
T 2j04_A          238 KVVLTC-PGYVHKIDLKN---------------YSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS  289 (588)
T ss_dssp             EEEEEC-SSEEEEEETTT---------------TEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred             EEEEEe-CCeEEEEECCC---------------CeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence            999987 69999999853               3332223379999999999  99999999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.4e-32  Score=212.24  Aligned_cols=205  Identities=12%  Similarity=0.144  Sum_probs=175.5

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      ||...|.+++++ +.+|++|+.|+.+++|+..... ..+..+.+|...+..+.|+|+++++++++.|+.+++|+..+++.
T Consensus       187 ~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~-~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~  264 (420)
T 4gga_A          187 SHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  264 (420)
T ss_dssp             CCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred             CCCCceEEEeeC-CCEEEEEeCCCceeEeeecccc-eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence            689999998876 5689999999999999988643 56778899999999999999999999999999999999987653


Q ss_pred             ----eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859          81 ----INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus        81 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                          +.....+...+....+.+.+..+++. .+|+.|++|++||+++++....+..+   ..+.++.|++++..+++++|
T Consensus       265 ~~~~~~~~~~~~~~V~~~~~~p~~~~~la~-~~gs~D~~I~iwd~~t~~~~~~~~~~---~~v~~~~~~~~~~~lv~~sg  340 (420)
T 4gga_A          265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLAT-GGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPHYKELISGHG  340 (420)
T ss_dssp             CSCCSEEECCCSSCEEEEEECTTCTTEEEE-EECTTTCEEEEEETTTTEEEEEEECS---SCEEEEEEETTTTEEEEEEC
T ss_pred             cceeeeeecccCCceeeeeeCCCcccEEEE-EeecCCCEEEEEeCCccccceeeccc---cceeeeeecCCCCeEEEEEe
Confidence                33444555667777888877666543 45688999999999999988887754   36789999999998666667


Q ss_pred             cCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         157 QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       157 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ..|+.|++||++ +++++.++. +|...|++++|+|+|++|++|+.|++|++||+.+
T Consensus       341 ~~d~~I~iwd~~-~~~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          341 FAQNQLVIWKYP-TMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             TTTCCEEEEETT-TCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             cCCCEEEEEECC-CCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            789999999999 899999998 9999999999999999999999999999999853

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.3e-31  Score=198.92  Aligned_cols=233  Identities=11%  Similarity=0.075  Sum_probs=163.7

Q ss_pred             eEEEEEcC-CC---eEEEecCCCeEEEEeccCC-ceeeeEEeecccc-------------------------ceeEEEEe
Q psy6859           6 ITHVVVTK-TD---FVITASNDGHIKFWKKQEE-GIEFVKHFRSHLG-------------------------VIHSICTN   55 (261)
Q Consensus         6 v~~~~~~~-~~---~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~~~-------------------------~v~~~~~~   55 (261)
                      +.++.|-. +-   .++++++ ..|++|+..+. ..+.+.++..|+.                         .|+.++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            34455544 32   5666665 79999998874 3356666665543                         56677778


Q ss_pred             eC----CCEEEEEeC--------------------CCcEEEEEcc-ccceeeeeeccCcceeEEEEee---cCCceeeee
Q psy6859          56 YN----GTLLCTVAS--------------------DKAMKVFDVI-NFDMINMIKLDFTPLTVECIHY---LGDAIPTAA  107 (261)
Q Consensus        56 ~~----~~~l~s~~~--------------------dg~v~~wd~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  107 (261)
                      ||    ++++++++.                    |+.|++|++. +++.+..+..+......+.+++   ++..+++. 
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg-  199 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT-  199 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE-
T ss_pred             CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe-
Confidence            88    777777653                    7777888873 4666666666666677777777   44555554 


Q ss_pred             eecCCCCeEEEEEcCCCceeeEEeecC-CcceEEEEEEeCCCCceE----------EEEecCCCeEEEEEccCCCcccee
Q psy6859         108 VSDQDSSRVHIYDCKGNDMINMIKLDF-TPLTVECIHYLGDAIPTA----------AVSDQDSSHVHIYDCKGNGTPLHV  176 (261)
Q Consensus       108 ~s~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~d~~i~i~d~~~~~~~~~~  176 (261)
                         +.|++|+|||+++++.++.+..+. ....+.+++|+|++...+          +++|+.|++|++||.. +++.+..
T Consensus       200 ---S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~-tgk~l~v  275 (356)
T 2w18_A          200 ---TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK-TTLSVGV  275 (356)
T ss_dssp             ---ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT-TTEEEEE
T ss_pred             ---cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC-CCEEEEE
Confidence               899999999999999999987533 234677889999987532          3678899999999998 8877665


Q ss_pred             e----ccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCcccee-eeeECCCC
Q psy6859         177 L----DRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPS-GLSFSPDG  251 (261)
Q Consensus       177 ~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~  251 (261)
                      +    +.+|...+.+..+  ++.++++++.|++|+|||+.               +++++.++.+|...+. .++|||||
T Consensus       276 ~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~---------------tGk~l~tL~gH~~~vvs~vafSPDG  338 (356)
T 2w18_A          276 MLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLL---------------LGQCTALLPPVSDQHWSFVKWSGTD  338 (356)
T ss_dssp             EEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETT---------------TCSEEEEECCC--CCCCEEEECSSS
T ss_pred             EEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECC---------------CCcEEEEecCCCCCeEEEEEECCCC
Confidence            5    1256555544444  48899999999999999994               5788999999988766 58999999


Q ss_pred             ceEEEeecCC
Q psy6859         252 NKFVTISMDR  261 (261)
Q Consensus       252 ~~l~s~~~Dg  261 (261)
                      ++|++|+.||
T Consensus       339 ~~LaSGS~D~  348 (356)
T 2w18_A          339 SHLLAGQKDG  348 (356)
T ss_dssp             SEEEEECTTS
T ss_pred             CEEEEEECCC
Confidence            9999999996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5e-33  Score=219.47  Aligned_cols=202  Identities=12%  Similarity=0.114  Sum_probs=163.0

Q ss_pred             eEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccccceeee--eeccCcceeEEEEee-cCCceeeeeeecCCCC
Q psy6859          39 VKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFDMINM--IKLDFTPLTVECIHY-LGDAIPTAAVSDQDSS  114 (261)
Q Consensus        39 ~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d~  114 (261)
                      .....+|...|++|+|+| ++++||+|+.||.|+|||+.+++....  +..+..++..+.++| ++..++++    +.|+
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~----s~D~  187 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS----SMEG  187 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEE----CSSS
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEE----eCCC
Confidence            345567888999999999 567999999999999999987764443  345666788888886 45666655    9999


Q ss_pred             eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC
Q psy6859         115 RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY  194 (261)
Q Consensus       115 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  194 (261)
                      +|++||++++........+.....+.+++|+|++..  +++|+.||.|++||++  ++.+..+. .|...|++++|+|++
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~g~~dg~i~~wd~~--~~~~~~~~-~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM--VVTGDNVGNVILLNMD--GKELWNLR-MHKKKVTHVALNPCC  262 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTE--EEEECSSSBEEEEESS--SCBCCCSB-CCSSCEEEEEECTTC
T ss_pred             EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCE--EEEEeCCCcEeeeccC--cceeEEEe-cccceEEeeeecCCC
Confidence            999999987755444444445556789999999975  8899999999999986  45677787 899999999999998


Q ss_pred             C-EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         195 Q-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       195 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      + +|++++.|+.|++||+++..            ....+....+|...|++++|+|+|++|++++.||
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~------------~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~  318 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVR------------GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS  318 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCC------------SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred             ceEEEEecCcceeeEEeccccc------------ccceEEEeeeccccccceeECCCCCeeEEEcCCC
Confidence            7 78899999999999996531            1223334467999999999999999999999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-32  Score=208.93  Aligned_cols=206  Identities=16%  Similarity=0.239  Sum_probs=169.3

Q ss_pred             eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc--ccceeeeeeccCcceeEEEEeec--CCceeeeeeecCC
Q psy6859          37 EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI--NFDMINMIKLDFTPLTVECIHYL--GDAIPTAAVSDQD  112 (261)
Q Consensus        37 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~  112 (261)
                      +++..+.+|.+.|++++|+|++++|++++.||.|++||+.  +++.+..+..+..++..+.+.++  +..++++    +.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----~~   77 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC----SY   77 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE----ET
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEe----cc
Confidence            4566788999999999999999999999999999999998  55677777777778888888766  6766666    89


Q ss_pred             CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC--CCceEEEEecCCCeEEEEEccCCCc--cceeeccCcccCeEEE
Q psy6859         113 SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD--AIPTAAVSDQDSSHVHIYDCKGNGT--PLHVLDRLHTKPVVLI  188 (261)
Q Consensus       113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~  188 (261)
                      |+.|++||+++++.........+...+.+++|+|+  +..  +++++.|+.|++||++ ...  ....+. .|...|.++
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~d~~i~v~d~~-~~~~~~~~~~~-~~~~~v~~~  153 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--LLVASSDGKVSVVEFK-ENGTTSPIIID-AHAIGVNSA  153 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--EEEEETTSEEEEEECC-TTSCCCEEEEE-CCTTCEEEE
T ss_pred             CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCE--EEEecCCCcEEEEecC-CCCceeeEEec-CCCCceEEE
Confidence            99999999999874444444446678999999999  654  8888999999999998 552  334454 799999999


Q ss_pred             EEcC-------------CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCC---Cc
Q psy6859         189 KFNP-------------IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPD---GN  252 (261)
Q Consensus       189 ~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~  252 (261)
                      +|+|             ++.+|++++.|+.|++||++++.           .....+..+.+|...|.+++|+|+   ++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  222 (379)
T 3jrp_A          154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----------QTYVLESTLEGHSDWVRDVAWSPTVLLRS  222 (379)
T ss_dssp             EECCCC----------CTTCEEEEEETTSCEEEEEEETTT-----------TEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC-----------cceeeEEEEecccCcEeEEEECCCCCCCC
Confidence            9999             68999999999999999986431           122355677889999999999999   89


Q ss_pred             eEEEeecCC
Q psy6859         253 KFVTISMDR  261 (261)
Q Consensus       253 ~l~s~~~Dg  261 (261)
                      +|++++.||
T Consensus       223 ~l~s~~~dg  231 (379)
T 3jrp_A          223 YLASVSQDR  231 (379)
T ss_dssp             EEEEEETTS
T ss_pred             eEEEEeCCC
Confidence            999999986

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.3e-32  Score=224.32  Aligned_cols=201  Identities=13%  Similarity=0.183  Sum_probs=168.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||...|++++|+| +++|++|+.|++|+|||+.+.  .....+.+|...|.+++|+|++++|++++.|++|++||.....
T Consensus       428 ~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~  505 (694)
T 3dm0_A          428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC  505 (694)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence            7999999999999 899999999999999999987  7888899999999999999999999999999999999986543


Q ss_pred             eeeee---eccCcceeEEEEeecCC--ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          80 MINMI---KLDFTPLTVECIHYLGD--AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        80 ~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      .....   ..+...+.++.+++++.  .+++    ++.|+.|++||+++.+....+..  +...+.+++|+|++..  ++
T Consensus       506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s----~s~d~~v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~--l~  577 (694)
T 3dm0_A          506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVS----ASWDKTVKVWNLSNCKLRSTLAG--HTGYVSTVAVSPDGSL--CA  577 (694)
T ss_dssp             EEEECSSTTSCSSCEEEEEECSCSSSCEEEE----EETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSE--EE
T ss_pred             ceeeccCCCCCCCcEEEEEEeCCCCcceEEE----EeCCCeEEEEECCCCcEEEEEcC--CCCCEEEEEEeCCCCE--EE
Confidence            32221   12444567777777653  3433    48999999999999888777765  4567999999999975  88


Q ss_pred             EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccc
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  215 (261)
                      +++.|+.|++||++ +++.+..+.  +...|.+++|+|++.+|++++ ++.|++||++++.
T Consensus       578 sg~~Dg~i~iwd~~-~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~  634 (694)
T 3dm0_A          578 SGGKDGVVLLWDLA-EGKKLYSLE--ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS  634 (694)
T ss_dssp             EEETTSBCEEEETT-TTEEEECCB--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred             EEeCCCeEEEEECC-CCceEEEec--CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence            99999999999999 888888884  567899999999999888776 5669999998754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.3e-31  Score=203.17  Aligned_cols=220  Identities=14%  Similarity=0.169  Sum_probs=170.2

Q ss_pred             EEecCCCe--EEEEeccCCceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEccccc-----eeeeeeccCc
Q psy6859          18 ITASNDGH--IKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVINFD-----MINMIKLDFT   89 (261)
Q Consensus        18 ~s~~~d~~--i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~~~-----~~~~~~~~~~   89 (261)
                      .+|...|+  +.++.......++..+|++|.+.|++|+|+|+ +++|+||+.|++|++||+.+.+     +...+..+..
T Consensus         8 ~~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~   87 (340)
T 4aow_A            8 SSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH   87 (340)
T ss_dssp             ------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS
T ss_pred             ccccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC
Confidence            34444454  33444444444677789999999999999997 6899999999999999997654     3455666777


Q ss_pred             ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC
Q psy6859          90 PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG  169 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  169 (261)
                      ++..+.+++++..++++    +.|+.|++|+.............  ...+....+.+++..  +++++.|+.+++||...
T Consensus        88 ~V~~~~~s~dg~~l~s~----~~d~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--l~s~s~d~~~~~~d~~~  159 (340)
T 4aow_A           88 FVSDVVISSDGQFALSG----SWDGTLRLWDLTTGTTTRRFVGH--TKDVLSVAFSSDNRQ--IVSGSRDKTIKLWNTLG  159 (340)
T ss_dssp             CEEEEEECTTSSEEEEE----ETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECTTSSC--EEEEETTSCEEEECTTS
T ss_pred             CEEEEEECCCCCEEEEE----cccccceEEeecccceeeeecCC--CCceeEEEEeecCcc--ceeecCCCeEEEEEeCC
Confidence            88899999999887776    89999999999988776666543  346677888888876  88999999999999973


Q ss_pred             CCccceeeccCcccCeEEEEEcCCC--CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeE
Q psy6859         170 NGTPLHVLDRLHTKPVVLIKFNPIY--QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSF  247 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  247 (261)
                      ......... .|...+..++|++++  .++++++.|+.|++||+++               .+.+..+.+|...|++++|
T Consensus       160 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---------------~~~~~~~~~h~~~v~~~~~  223 (340)
T 4aow_A          160 VCKYTVQDE-SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN---------------CKLKTNHIGHTGYLNTVTV  223 (340)
T ss_dssp             CEEEEECSS-SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT---------------TEEEEEECCCSSCEEEEEE
T ss_pred             CceEEEEec-cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC---------------CceeeEecCCCCcEEEEEE
Confidence            333344444 889999999999876  4788999999999999954               6778888999999999999


Q ss_pred             CCCCceEEEeecCC
Q psy6859         248 SPDGNKFVTISMDR  261 (261)
Q Consensus       248 s~~~~~l~s~~~Dg  261 (261)
                      +|++++|++|+.||
T Consensus       224 s~~~~~l~s~s~Dg  237 (340)
T 4aow_A          224 SPDGSLCASGGKDG  237 (340)
T ss_dssp             CTTSSEEEEEETTC
T ss_pred             CCCCCEEEEEeCCC
Confidence            99999999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-31  Score=207.71  Aligned_cols=203  Identities=12%  Similarity=0.131  Sum_probs=168.3

Q ss_pred             eeeEEeeccccceeEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeeeec--cCcceeEEEEee-cCCceeeeeeecCC
Q psy6859          37 EFVKHFRSHLGVIHSICTNYNG-TLLCTVASDKAMKVFDVINFDMINMIKL--DFTPLTVECIHY-LGDAIPTAAVSDQD  112 (261)
Q Consensus        37 ~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v~~wd~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~s~~~  112 (261)
                      +....+.+|...|.+++|+|++ ++|++++.||.|++||+.+++....+..  +...+..+.+++ ++..++++    +.
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~----~~  139 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS----SI  139 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE----ET
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE----eC
Confidence            6677888999999999999998 9999999999999999998887777663  566777778877 55666555    89


Q ss_pred             CCeEEEEEcCCCceeeEEee-cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc
Q psy6859         113 SSRVHIYDCKGNDMINMIKL-DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN  191 (261)
Q Consensus       113 d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  191 (261)
                      |+.|++||+++. .+..+.. ..+...+.+++|+|++..  +++++.|+.|++||++  ++++..+. .|...|.+++|+
T Consensus       140 d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~i~d~~--~~~~~~~~-~h~~~v~~~~~~  213 (383)
T 3ei3_B          140 RGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQM--LATGDSTGRLLLLGLD--GHEIFKEK-LHKAKVTHAEFN  213 (383)
T ss_dssp             TTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTE--EEEEETTSEEEEEETT--SCEEEEEE-CSSSCEEEEEEC
T ss_pred             CCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCE--EEEECCCCCEEEEECC--CCEEEEec-cCCCcEEEEEEC
Confidence            999999999974 4444433 334467999999999985  8899999999999984  66788887 899999999999


Q ss_pred             CCCC-EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECC-CCceEEEeecCC
Q psy6859         192 PIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP-DGNKFVTISMDR  261 (261)
Q Consensus       192 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~Dg  261 (261)
                      |+++ +|++++.|+.|++||+++..           ....++..+ +|...|.+++|+| ++++|++++.||
T Consensus       214 ~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~  273 (383)
T 3ei3_B          214 PRCDWLMATSSVDATVKLWDLRNIK-----------DKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRN  273 (383)
T ss_dssp             SSCTTEEEEEETTSEEEEEEGGGCC-----------STTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSS
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCCC-----------cccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCC
Confidence            9999 89999999999999996521           113344444 6899999999999 999999999886

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-32  Score=206.44  Aligned_cols=227  Identities=7%  Similarity=0.014  Sum_probs=165.3

Q ss_pred             CeEEEEEcCCCeEEEecCCCeEEEEeccCC-------ceeeeEEee-ccccceeEEEEee--CCCEEEEEeCCCcEEEEE
Q psy6859           5 PITHVVVTKTDFVITASNDGHIKFWKKQEE-------GIEFVKHFR-SHLGVIHSICTNY--NGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         5 ~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~-------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~s~~~dg~v~~wd   74 (261)
                      .|.++.|+|.  +++++.|++|++|+....       ..+.+..+. +|.++|.+++|+|  +++++++++.||+|++||
T Consensus        78 ~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd  155 (343)
T 3lrv_A           78 NPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQS  155 (343)
T ss_dssp             CCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEE
T ss_pred             CceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEE
Confidence            4555666666  999999999999987632       012233333 5778899999999  999999999999999999


Q ss_pred             ccccceeeeeecc-CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCcee-eEEeecCCcceEEEEEEeCCCCceE
Q psy6859          75 VINFDMINMIKLD-FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMI-NMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        75 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      +.+++.......+ ...+..+.+++++..++++    +.|+.|++||+++++.+ ..+.. .+...+.+++|+|++.+  
T Consensus       156 ~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg----~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~--  228 (343)
T 3lrv_A          156 YEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY----SPDGILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYW--  228 (343)
T ss_dssp             SSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE----CTTSCEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSE--
T ss_pred             CCCCcEEEEEecCCCCceEEEEECCCCCEEEEE----cCCCEEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCE--
Confidence            9998886655333 3357788899988877666    89999999999998876 56654 24568999999999975  


Q ss_pred             EEEecCCCeEEEEEccCCCccceeecc--CcccCeE--EEEEcCCCCEEEEEcC-CCeEEEeecccccccCCeeeeeecc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLDR--LHTKPVV--LIKFNPIYQVVVSVDK-AGILEYWSGYKQEFKFPKCVHFESK  227 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~v~--~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~  227 (261)
                      +++++ ++.|++||++ ..+.+..+..  .|...+.  +++|+|++++|++++. |+.+++|++...             
T Consensus       229 l~s~~-~~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~-------------  293 (343)
T 3lrv_A          229 MVVEC-DQTVVCFDLR-KDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK-------------  293 (343)
T ss_dssp             EEEEE-SSBEEEEETT-SSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT-------------
T ss_pred             EEEEe-CCeEEEEEcC-CCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc-------------
Confidence            77777 5599999999 7766655540  2334444  6999999999999887 999999998532             


Q ss_pred             cccceeecCCCccceeeeeECC---CCceEEEeecCC
Q psy6859         228 LDTDLFEFAKNKTYPSGLSFSP---DGNKFVTISMDR  261 (261)
Q Consensus       228 ~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~Dg  261 (261)
                        ......    .++..++|+|   +.+.|++++.||
T Consensus       294 --~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~  324 (343)
T 3lrv_A          294 --TKNWTK----DEESALCLQSDTADFTDMDVVCGDG  324 (343)
T ss_dssp             --TCSEEE----EEEEECCC----CCCCEEEEEEETT
T ss_pred             --ccceEe----cCceeEecCccccccceeEEEecCC
Confidence              111111    4556667776   666777666654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.1e-30  Score=200.69  Aligned_cols=239  Identities=10%  Similarity=0.104  Sum_probs=172.3

Q ss_pred             CeEEEEEcC-CCeE-EEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-cee
Q psy6859           5 PITHVVVTK-TDFV-ITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-DMI   81 (261)
Q Consensus         5 ~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-~~~   81 (261)
                      .+..+++.+ ++.+ ++++.|++|++||..++  +.+..+. |...|.+++|+++  .++.+ .|+.|++||+.++ +.+
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~--~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~  133 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK--QDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRI  133 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTT--EEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBS
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCC--cEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceee
Confidence            466788887 6655 67888999999999887  7777776 6679999999887  44444 4789999999988 666


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc---------------e-eeEEeecCCcceEEEEEEe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND---------------M-INMIKLDFTPLTVECIHYL  145 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~---------------~-~~~~~~~~~~~~~~~~~~~  145 (261)
                      ..+..   +.....+.+  ..++.  .+|+.+|.|++||+++++               + +..+.  .+...|.+++|+
T Consensus       134 ~~~~~---~~~~~~~s~--~~la~--~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~--~h~~~v~~~~~s  204 (355)
T 3vu4_A          134 TDDIR---FGGVCEFSN--GLLVY--SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK--AHTNPIKMVRLN  204 (355)
T ss_dssp             SCCEE---EEEEEEEET--TEEEE--EESSCTTCEEEEECCC------------------CCEEEC--CCSSCEEEEEEC
T ss_pred             EEecc---CCceEEEEc--cEEEE--eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE--ccCCceEEEEEC
Confidence            66654   444555555  22221  226899999999999765               1 34444  456689999999


Q ss_pred             CCCCceEEEEecCCCe-EEEEEccCCCccceeeccC-cccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeee
Q psy6859         146 GDAIPTAAVSDQDSSH-VHIYDCKGNGTPLHVLDRL-HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVH  223 (261)
Q Consensus       146 ~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  223 (261)
                      |++..  +++++.|++ |++||++ +++++..+..+ |...|++++|+|++++|++++.|+.|++||++...........
T Consensus       205 ~~g~~--l~s~s~d~~~v~iwd~~-~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~  281 (355)
T 3vu4_A          205 RKSDM--VATCSQDGTIIRVFKTE-DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALK  281 (355)
T ss_dssp             TTSSE--EEEEETTCSEEEEEETT-TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETT
T ss_pred             CCCCE--EEEEeCCCCEEEEEECC-CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccc
Confidence            99975  899999998 9999999 88999888623 9999999999999999999999999999999754221110000


Q ss_pred             e-----eccccc--ceeec-CCCccceeeeeECCCCceEEEeecCC
Q psy6859         224 F-----ESKLDT--DLFEF-AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       224 ~-----~~~~~~--~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .     ......  ....+ ..+......++|+||+++|++++.||
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg  327 (355)
T 3vu4_A          282 GWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTR  327 (355)
T ss_dssp             TTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred             ceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence            0     000000  00011 11223346799999999999999886

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.2e-30  Score=205.59  Aligned_cols=235  Identities=14%  Similarity=0.086  Sum_probs=190.8

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~   78 (261)
                      +|...|++++|+| +.++++++.|+.|++||+++.  +.+..+..|...+.+++|+|++++++++ +.|+.|++||+.++
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  244 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL--AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK  244 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc--eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence            5888999999999 889999999999999999886  6777888888999999999999988544 47999999999999


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecC----CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ----DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      +.+..+..+. ....+.++++++.+++......    .|+.|++||+++++.+..+..   +..+..++|+|++.. +++
T Consensus       245 ~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~-l~~  319 (433)
T 3bws_A          245 LEIRKTDKIG-LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP---PGNKRHIVSGNTENK-IYV  319 (433)
T ss_dssp             EEEEECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE---EECEEEEEECSSTTE-EEE
T ss_pred             cEEEEecCCC-CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC---CCCcceEEECCCCCE-EEE
Confidence            8887776543 3567778888887776622111    588999999999887766643   336788999999875 467


Q ss_pred             EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcC---------------CCeEEEeecccccccCC
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK---------------AGILEYWSGYKQEFKFP  219 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~  219 (261)
                      +++.++.|++||+. +++.+..+.  +...+.+++|+|++++|++++.               ||.|++||+.+      
T Consensus       320 ~~~~~~~v~v~d~~-~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~------  390 (433)
T 3bws_A          320 SDMCCSKIEVYDLK-EKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT------  390 (433)
T ss_dssp             EETTTTEEEEEETT-TTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT------
T ss_pred             EecCCCEEEEEECC-CCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC------
Confidence            77889999999998 888888874  7788999999999998887775               57999999854      


Q ss_pred             eeeeeecccccceeecCCCccceeeeeECCCCceEEEeec-CC
Q psy6859         220 KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM-DR  261 (261)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-Dg  261 (261)
                               ++.+..+.. ...+.+++|+|+|++|++++. |+
T Consensus       391 ---------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~  423 (433)
T 3bws_A          391 ---------DTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDH  423 (433)
T ss_dssp             ---------TEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTT
T ss_pred             ---------CcEEEEecC-CCCCceEEEcCCCCEEEEEECCCC
Confidence                     455555554 457899999999999998764 54

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-32  Score=231.29  Aligned_cols=237  Identities=14%  Similarity=0.113  Sum_probs=182.3

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEE----ee-----ccccceeEEEEeeCCCEEEEEeCCCcE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKH----FR-----SHLGVIHSICTNYNGTLLCTVASDKAM   70 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~-----~~~~~v~~~~~~~~~~~l~s~~~dg~v   70 (261)
                      ||...+.+++|+| +++|++|+.|++|++||+.++.......    +.     +|...|.+++|+||+++||+|+.||+|
T Consensus       433 G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV  512 (902)
T 2oaj_A          433 GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDV  512 (902)
T ss_dssp             CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCE
T ss_pred             CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEE
Confidence            5777788888899 8999999999999999998753211111    11     788999999999999999999999999


Q ss_pred             EEEEccccc---------------------------------------------eeeeeeccCcceeEEEEeecCCceee
Q psy6859          71 KVFDVINFD---------------------------------------------MINMIKLDFTPLTVECIHYLGDAIPT  105 (261)
Q Consensus        71 ~~wd~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (261)
                      +|||+.+++                                             ++..+..+..++..+.+++++ .+++
T Consensus       513 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAs  591 (902)
T 2oaj_A          513 VLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGI  591 (902)
T ss_dssp             EEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEE
T ss_pred             EEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEE
Confidence            999998662                                             245556677788899999999 7766


Q ss_pred             eeeecCCCCeEEEEEcCCCceeeEEee----cCCcceEEEEEEe-----CCCC-ceEEEEecCCCeEEEEEc---cCCCc
Q psy6859         106 AAVSDQDSSRVHIYDCKGNDMINMIKL----DFTPLTVECIHYL-----GDAI-PTAAVSDQDSSHVHIYDC---KGNGT  172 (261)
Q Consensus       106 ~~~s~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~-~~~~~~~~~d~~i~i~d~---~~~~~  172 (261)
                      +    +.|++|++||+++...+.....    ..+...|.+++|+     ||+. ...+++|+.|++|++||+   . +++
T Consensus       592 g----s~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~-~g~  666 (902)
T 2oaj_A          592 A----YAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPAS-GGK  666 (902)
T ss_dssp             E----ETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECG-GGC
T ss_pred             E----eCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCC-CCc
Confidence            6    8999999999988776543222    1466789999999     8852 123899999999999999   5 677


Q ss_pred             cceeeccCc-----ccCeEEEE-Ec----------------------CCCCEEEEEcCCCeEEEeecccccccCCeeeee
Q psy6859         173 PLHVLDRLH-----TKPVVLIK-FN----------------------PIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHF  224 (261)
Q Consensus       173 ~~~~~~~~~-----~~~v~~~~-~~----------------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  224 (261)
                      .+..+. +|     ..+|.+++ |+                      +++.+|+++  +..|+||++.+           
T Consensus       667 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~-----------  732 (902)
T 2oaj_A          667 FDVQLM-DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGK-----------  732 (902)
T ss_dssp             EEEEEE-EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTC-----------
T ss_pred             EEEEec-CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCcc-----------
Confidence            777775 44     46777776 65                      455555554  67899999954           


Q ss_pred             ecccccceeecCCCccceeee---e------ECCCCceEEEeecCC
Q psy6859         225 ESKLDTDLFEFAKNKTYPSGL---S------FSPDGNKFVTISMDR  261 (261)
Q Consensus       225 ~~~~~~~~~~~~~~~~~v~~~---~------~s~~~~~l~s~~~Dg  261 (261)
                          +++.+....|...+.++   .      |++++..|++++.||
T Consensus       733 ----~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g  774 (902)
T 2oaj_A          733 ----SKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEING  774 (902)
T ss_dssp             ----CCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTS
T ss_pred             ----ccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCC
Confidence                56666555666666665   5      789999999999886

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=224.81  Aligned_cols=205  Identities=14%  Similarity=0.111  Sum_probs=167.3

Q ss_pred             CCCCCeEEEEEcC---CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC--CCEEEEEeCCCcEEEEEc
Q psy6859           1 MHRSPITHVVVTK---TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN--GTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         1 gH~~~v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~v~~wd~   75 (261)
                      ||.++|++++|+|   +++|++|+.||.|++||+.++.......+.+|...|.+++|+|+  ++++++++.||.|++||+
T Consensus        51 ~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl  130 (753)
T 3jro_A           51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF  130 (753)
T ss_dssp             CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred             CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence            6999999999986   57999999999999999998754578888899999999999999  999999999999999999


Q ss_pred             cccce--eeeeeccCcceeEEEEee-------------cCCceeeeeeecCCCCeEEEEEcCCCceee--EEeecCCcce
Q psy6859          76 INFDM--INMIKLDFTPLTVECIHY-------------LGDAIPTAAVSDQDSSRVHIYDCKGNDMIN--MIKLDFTPLT  138 (261)
Q Consensus        76 ~~~~~--~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~  138 (261)
                      .++..  ...+..+...+..+.+.+             ++..++++    +.||.|++||++++....  ......+...
T Consensus       131 ~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg----s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~  206 (753)
T 3jro_A          131 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG----GADNLVKIWKYNSDAQTYVLESTLEGHSDW  206 (753)
T ss_dssp             CSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE----ETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred             ecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE----ECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence            87743  333444556677777777             35666555    899999999998774321  1223345668


Q ss_pred             EEEEEEeCC---CCceEEEEecCCCeEEEEEccCCCc-----cceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859         139 VECIHYLGD---AIPTAAVSDQDSSHVHIYDCKGNGT-----PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       139 ~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      +.+++|+|+   +..  +++++.||.|++||++ .+.     .+.... .|...|++++|+|++++|++++.||.|++|+
T Consensus       207 V~~l~~sp~~~~~~~--l~s~s~Dg~I~iwd~~-~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          207 VRDVAWSPTVLLRSY--LASVSQDRTCIIWTQD-NEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             EEEEEECCCCSSSEE--EEEEESSSCEEEEEES-SSSSCCBCCBSSSS-CCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             EEEEEeccCCCCCCE--EEEEecCCEEEEecCC-CCCCcceeEEeccC-CCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence            999999999   654  8899999999999998 542     222333 6889999999999999999999999999999


Q ss_pred             ccc
Q psy6859         211 GYK  213 (261)
Q Consensus       211 ~~~  213 (261)
                      +..
T Consensus       283 ~~~  285 (753)
T 3jro_A          283 ENL  285 (753)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            874

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.6e-31  Score=197.33  Aligned_cols=183  Identities=9%  Similarity=-0.011  Sum_probs=141.1

Q ss_pred             CCCeEEEEeccCCceeeeEEeeccccceeEEEEee---CCCEEEEEeCCCcEEEEEccccceeeeeeccCc---ceeEEE
Q psy6859          22 NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY---NGTLLCTVASDKAMKVFDVINFDMINMIKLDFT---PLTVEC   95 (261)
Q Consensus        22 ~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~---~~~~~~   95 (261)
                      .|+.|++|++...+ +.+..+.+|...+..++|++   ++++|++++.|++|+|||+.++++++++..+..   ......
T Consensus       155 ~d~~V~~~~~s~dG-~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va  233 (356)
T 2w18_A          155 SDQQVEVMTFAEDG-GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA  233 (356)
T ss_dssp             TTCEEEEEEECTTS-CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE
T ss_pred             CCCcEEEEEECCCC-ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE
Confidence            48999999995532 67777888999999999999   779999999999999999999999999875432   344557


Q ss_pred             EeecCCceeee--------eeecCCCCeEEEEEcCCCceeeEEeec---CCcceEEEEEEeCCCCceEEEEecCCCeEEE
Q psy6859          96 IHYLGDAIPTA--------AVSDQDSSRVHIYDCKGNDMINMIKLD---FTPLTVECIHYLGDAIPTAAVSDQDSSHVHI  164 (261)
Q Consensus        96 ~~~~~~~~~~~--------~~s~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  164 (261)
                      +++++..+++.        .++|+.|++|++||..+++.+..+...   .+...+.+.+++  +.  ++++++.|++|+|
T Consensus       234 fSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~--~lASgS~DgTIkI  309 (356)
T 2w18_A          234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH--CAAAILTSGTIAI  309 (356)
T ss_dssp             EEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT--EEEEEETTSCEEE
T ss_pred             ECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC--EEEEEcCCCcEEE
Confidence            88887766442        256789999999999999877665422   222234444444  33  3889999999999


Q ss_pred             EEccCCCccceeeccCcccCeE-EEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         165 YDCKGNGTPLHVLDRLHTKPVV-LIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       165 ~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      ||+. +++++.+++ +|...+. .++|+|||++|++|+.|++|+|||+
T Consensus       310 WDl~-tGk~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          310 WDLL-LGQCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EETT-TCSEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EECC-CCcEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999 999999997 7877655 5899999999999999999999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6.4e-31  Score=207.10  Aligned_cols=207  Identities=15%  Similarity=0.245  Sum_probs=171.1

Q ss_pred             CCCCCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCc-----eeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEE
Q psy6859           1 MHRSPITHVVVTK-TD-FVITASNDGHIKFWKKQEEG-----IEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKV   72 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~   72 (261)
                      +|...|++++|+| +. +|++|+.||.|++|++....     ......+.+|...|.+++|+| ++.+|++++.||.|++
T Consensus       179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i  258 (430)
T 2xyi_A          179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI  258 (430)
T ss_dssp             CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence            6899999999999 66 99999999999999998731     122566778999999999999 7789999999999999


Q ss_pred             EEcccc---ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-CceeeEEeecCCcceEEEEEEeCCC
Q psy6859          73 FDVINF---DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMIKLDFTPLTVECIHYLGDA  148 (261)
Q Consensus        73 wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  148 (261)
                      ||++++   +.+..+..+...+..+.+++++..+++.   ++.|+.|++||+++ ..++..+..  +...+.+++|+|++
T Consensus       259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~t---g~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~  333 (430)
T 2xyi_A          259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT---GSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHN  333 (430)
T ss_dssp             EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEE---EETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSC
T ss_pred             EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEE---EeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCC
Confidence            999877   4666676777788888998888753322   48999999999998 456666665  45589999999998


Q ss_pred             CceEEEEecCCCeEEEEEccCC-------------CccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccc
Q psy6859         149 IPTAAVSDQDSSHVHIYDCKGN-------------GTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       149 ~~~~~~~~~~d~~i~i~d~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  214 (261)
                      .. ++++++.|+.|++||+...             .+++..+. +|...|++++|+|+++ +|++++.||.|++|++...
T Consensus       334 ~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          334 ET-ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TT-EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC-CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CC-EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC-CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            75 3778888999999999821             24555665 8899999999999999 8999999999999998654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-30  Score=200.25  Aligned_cols=200  Identities=15%  Similarity=0.210  Sum_probs=173.2

Q ss_pred             eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859          37 EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRV  116 (261)
Q Consensus        37 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i  116 (261)
                      .....+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..+...+..+.++++++.++++    +.|+.|
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~dg~i   98 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG----SADYSI   98 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE----ETTTEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEE----eCCCeE
Confidence            4556789999999999999999999999999999999999999999998888888899999988877766    899999


Q ss_pred             EEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC-----CeEEEEEccCCCc-----------cceeeccC
Q psy6859         117 HIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-----SHVHIYDCKGNGT-----------PLHVLDRL  180 (261)
Q Consensus       117 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~-----------~~~~~~~~  180 (261)
                      ++||+++++.+..+.   ....+.++.|+|++..  +++++.+     +.|++||+. ...           .+..+. .
T Consensus        99 ~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~--l~~~~~~~~~~~g~i~~~d~~-~~~~~~~~~~~~~~~~~~~~-~  171 (369)
T 3zwl_B           99 KLWDVSNGQCVATWK---SPVPVKRVEFSPCGNY--FLAILDNVMKNPGSINIYEIE-RDSATHELTKVSEEPIHKII-T  171 (369)
T ss_dssp             EEEETTTCCEEEEEE---CSSCEEEEEECTTSSE--EEEEECCBTTBCCEEEEEEEE-ECTTTCCEEEECSSCSEEEE-C
T ss_pred             EEEECCCCcEEEEee---cCCCeEEEEEccCCCE--EEEecCCccCCCCEEEEEEec-CCccceeecccccceeeecc-C
Confidence            999999999888877   4557899999999986  7777777     999999998 443           233333 4


Q ss_pred             ccc--CeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         181 HTK--PVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       181 ~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      |..  .+.+++|+|++++|++++.||.|++||+++.              .+.+..+..|...|.+++|+|++++|++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN--------------YEYVDSIDLHEKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT--------------TEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC--------------cEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence            555  8999999999999999999999999999531              466777888999999999999999999999


Q ss_pred             cCC
Q psy6859         259 MDR  261 (261)
Q Consensus       259 ~Dg  261 (261)
                      .||
T Consensus       238 ~d~  240 (369)
T 3zwl_B          238 RDT  240 (369)
T ss_dssp             TTS
T ss_pred             CCc
Confidence            886

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.5e-31  Score=207.06  Aligned_cols=202  Identities=9%  Similarity=-0.036  Sum_probs=145.0

Q ss_pred             CCCCCeEEEEEcC---------CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCC-CEEEEEeCCCcE
Q psy6859           1 MHRSPITHVVVTK---------TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNG-TLLCTVASDKAM   70 (261)
Q Consensus         1 gH~~~v~~~~~~~---------~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~v   70 (261)
                      ||++.|++|+|+|         +++||+|+.|++|+|||+.+.  .+...+..|..+|.+++|+|++ ++|++++.|++|
T Consensus       134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v  211 (393)
T 4gq1_A          134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE--GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNI  211 (393)
T ss_dssp             SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT--EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC--ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEE
Confidence            7999999999985         468999999999999999876  6666777789999999999976 489999999999


Q ss_pred             EEEEccccceeeeee-------------------------ccCcceeEEEE-eecCCceeeeeeecCCCCeEEEEEcCCC
Q psy6859          71 KVFDVINFDMINMIK-------------------------LDFTPLTVECI-HYLGDAIPTAAVSDQDSSRVHIYDCKGN  124 (261)
Q Consensus        71 ~~wd~~~~~~~~~~~-------------------------~~~~~~~~~~~-~~~~~~~~~~~~s~~~d~~i~i~d~~~~  124 (261)
                      ++||+.+++......                         .+......+.+ .+++..+++.    +.|+++++||+..+
T Consensus       212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~----s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM----CKSGAWLRWNLFAN  287 (393)
T ss_dssp             EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE----CTTSEEEEEEC---
T ss_pred             EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE----eCCCCEEEEECccC
Confidence            999998776443321                         11122233333 3667777666    89999999999877


Q ss_pred             ceeeEEeecCC----------------cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEE
Q psy6859         125 DMINMIKLDFT----------------PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLI  188 (261)
Q Consensus       125 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~  188 (261)
                      +....+..+..                ........+.|.....++++|+.|+.|++||+. +++++..+. .|..+|.++
T Consensus       288 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~-~~~~~~~~~-~~~~~V~sv  365 (393)
T 4gq1_A          288 NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY-EKDSNSIPI-QLGMPIVDF  365 (393)
T ss_dssp             ----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT-CTTCCEEEE-ECSSCEEEE
T ss_pred             CCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC-CCcEEEEec-CCCCcEEEE
Confidence            65444422110                011122344554444568899999999999998 787777776 889999999


Q ss_pred             EEcCCCCEEEEEcCCCeEEEeec
Q psy6859         189 KFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       189 ~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      +|+|||++||+++.+| +.+|.+
T Consensus       366 afspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          366 CWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEcCCCCEEEEEeCCC-eEEEEE
Confidence            9999999999999776 677766

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.2e-29  Score=195.98  Aligned_cols=228  Identities=12%  Similarity=0.158  Sum_probs=183.2

Q ss_pred             CCeEEEEEcC-CCeE-EEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccce
Q psy6859           4 SPITHVVVTK-TDFV-ITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDM   80 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~   80 (261)
                      ..+.+++|+| ++++ ++++.|+.|++||+.++  +.+..+..+. .+.+++|+|++++|+.+ +.++.|++||+.+++.
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~  108 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV  108 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCC--eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE
Confidence            4689999999 7765 77889999999999887  6777777554 89999999999987654 4679999999999988


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      +..+..+. ....+.++++++.++..   ++.++.|++||+++++.+..+..+.   .+..+.|+|++.. ++++++.++
T Consensus       109 ~~~~~~~~-~~~~~~~s~dg~~l~~~---~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~-l~~~~~~~~  180 (391)
T 1l0q_A          109 AGTVKTGK-SPLGLALSPDGKKLYVT---NNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTK-VYVANFDSM  180 (391)
T ss_dssp             EEEEECSS-SEEEEEECTTSSEEEEE---ETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSE-EEEEETTTT
T ss_pred             EEEEeCCC-CcceEEECCCCCEEEEE---eCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCE-EEEEeCCCC
Confidence            88777554 35677788888766332   3789999999999998888777543   4589999999975 356778899


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc---CCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD---KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      .|++||++ +++.+..+.  +...+.+++|+|++++|++++   .++.|++||+.+               ++.+..+..
T Consensus       181 ~v~~~d~~-~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~---------------~~~~~~~~~  242 (391)
T 1l0q_A          181 SISVIDTV-TNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---------------NKITARIPV  242 (391)
T ss_dssp             EEEEEETT-TTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---------------TEEEEEEEC
T ss_pred             EEEEEECC-CCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC---------------CeEEEEEec
Confidence            99999998 888887774  667889999999999988887   689999999954               455666665


Q ss_pred             CccceeeeeECCCCceE-EEeecCC
Q psy6859         238 NKTYPSGLSFSPDGNKF-VTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l-~s~~~Dg  261 (261)
                      |. .+.+++|+|+|++| ++++.|+
T Consensus       243 ~~-~~~~~~~s~dg~~l~~s~~~d~  266 (391)
T 1l0q_A          243 GP-DPAGIAVTPDGKKVYVALSFXN  266 (391)
T ss_dssp             CS-SEEEEEECTTSSEEEEEETTTT
T ss_pred             CC-CccEEEEccCCCEEEEEcCCCC
Confidence            54 47899999999988 5556554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-30  Score=191.94  Aligned_cols=194  Identities=18%  Similarity=0.232  Sum_probs=167.0

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|...|.+++|. ++++++++.|+.|++||  ..  +....+..|...+.++.|.| +++++++++.|+.|++||  ..+
T Consensus       102 ~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~  174 (313)
T 3odt_A          102 GHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EG--SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDK  174 (313)
T ss_dssp             CCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TT--EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTE
T ss_pred             hcccCEEEEEec-CCEEEEEeCCCCEEEEc--CC--cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCc
Confidence            589999999994 66899999999999999  33  67788889999999999998 899999999999999999  445


Q ss_pred             eeeeeec-cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          80 MINMIKL-DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ....+.. +...+..+.+.+++. +++.    +.|+.|++||+++++.+..+..  +...+.+++|+|++.   +++++.
T Consensus       175 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~----~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~---l~~~~~  244 (313)
T 3odt_A          175 VIKTFSGIHNDVVRHLAVVDDGH-FISC----SNDGLIKLVDMHTGDVLRTYEG--HESFVYCIKLLPNGD---IVSCGE  244 (313)
T ss_dssp             EEEEECSSCSSCEEEEEEEETTE-EEEE----ETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSC---EEEEET
T ss_pred             eEEEEeccCcccEEEEEEcCCCe-EEEc----cCCCeEEEEECCchhhhhhhhc--CCceEEEEEEecCCC---EEEEec
Confidence            5555554 666778888888776 5444    8999999999999988888875  445799999999994   788889


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      |+.|++||++ +++++..+. .|...|.+++|+|+++ +++++.||.|++||++++
T Consensus       245 dg~v~iwd~~-~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          245 DRTVRIWSKE-NGSLKQVIT-LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             TSEEEEECTT-TCCEEEEEE-CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             CCEEEEEECC-CCceeEEEe-ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            9999999999 888999997 8999999999999998 556888999999999653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.8e-31  Score=202.13  Aligned_cols=204  Identities=17%  Similarity=0.121  Sum_probs=161.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEE--eeCCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICT--NYNGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      +|..+|++++|+| +++|++++.||.|++||+.+.  +... +..|...|.+++|  ++++++|++++.||.|++||+.+
T Consensus        84 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A           84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN--QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred             cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC--Ccee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence            5899999999999 899999999999999999986  4444 5669999999999  88999999999999999999998


Q ss_pred             cceeeeeeccCc-----------------------------------------ceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859          78 FDMINMIKLDFT-----------------------------------------PLTVECIHYLGDAIPTAAVSDQDSSRV  116 (261)
Q Consensus        78 ~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~s~~~d~~i  116 (261)
                      ++.+..+..+..                                         ...+..+.+....-....++++.|+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i  240 (368)
T 3mmy_A          161 SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV  240 (368)
T ss_dssp             SSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred             CcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence            887766654321                                         112222222222211113455899999


Q ss_pred             EEEEcCCC---ceeeEEeecCCc----------ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCccc
Q psy6859         117 HIYDCKGN---DMINMIKLDFTP----------LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTK  183 (261)
Q Consensus       117 ~i~d~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  183 (261)
                      ++||++..   ..+..+..+...          ..+.+++|+|++.+  +++++.||.|++||++ +++++..+. .|..
T Consensus       241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~s~~~dg~i~iwd~~-~~~~~~~~~-~~~~  316 (368)
T 3mmy_A          241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT--LATVGSDGRFSFWDKD-ARTKLKTSE-QLDQ  316 (368)
T ss_dssp             EEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC--EEEEETTSCEEEEETT-TTEEEEECC-CCSS
T ss_pred             EEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE--EEEEccCCeEEEEECC-CCcEEEEec-CCCC
Confidence            99999987   344455443211          15999999999976  8899999999999999 889999998 8999


Q ss_pred             CeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         184 PVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       184 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      +|++++|+|++++|++++.|+..+.|++
T Consensus       317 ~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          317 PISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             CceEEEECCCCCeEEEEecccccccccc
Confidence            9999999999999999999886666654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.8e-31  Score=206.65  Aligned_cols=229  Identities=14%  Similarity=0.164  Sum_probs=177.8

Q ss_pred             CCCeEEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEccccceeeeee-------------cc
Q psy6859          22 NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINFDMINMIK-------------LD   87 (261)
Q Consensus        22 ~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-------------~~   87 (261)
                      .++.+++|+++..  +....+.+|.+.|++++|+| ++++|++++.||.|++||+.+++....+.             .+
T Consensus        21 ~~~~~~v~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (408)
T 4a11_B           21 AESTRRVLGLELN--KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH   98 (408)
T ss_dssp             HHHHHHHHTEEEC--TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred             ccCcceeeccccC--cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence            3456778888766  56677888999999999999 99999999999999999999877655543             25


Q ss_pred             CcceeEEEEee-cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC-ceEEEEecCCCeEEEE
Q psy6859          88 FTPLTVECIHY-LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI-PTAAVSDQDSSHVHIY  165 (261)
Q Consensus        88 ~~~~~~~~~~~-~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~  165 (261)
                      ..++..+.+.+ ++..++++    +.|+.|++||+++++....+..   +..+.++.+.+... ..++++++.++.|++|
T Consensus        99 ~~~v~~~~~~~~~~~~l~s~----~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  171 (408)
T 4a11_B           99 RYSVETVQWYPHDTGMFTSS----SFDKTLKVWDTNTLQTADVFNF---EETVYSHHMSPVSTKHCLVAVGTRGPKVQLC  171 (408)
T ss_dssp             SSCEEEEEECTTCTTCEEEE----ETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred             CCcEEEEEEccCCCcEEEEE----eCCCeEEEeeCCCCccceeccC---CCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence            56677788887 55556555    8899999999999988887763   34678888887542 1238888899999999


Q ss_pred             EccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCeeee-eecccccceeecCCCcccee
Q psy6859         166 DCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVH-FESKLDTDLFEFAKNKTYPS  243 (261)
Q Consensus       166 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~  243 (261)
                      |++ +++.+..+. .|...|++++|+|+++ +|++++.||.|++||++........... ..............|...|.
T Consensus       172 d~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  249 (408)
T 4a11_B          172 DLK-SGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN  249 (408)
T ss_dssp             ESS-SSCCCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred             eCC-Ccceeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence            999 888899997 8999999999999999 5899999999999999754211000000 00011122233367899999


Q ss_pred             eeeECCCCceEEEeecCC
Q psy6859         244 GLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       244 ~~~~s~~~~~l~s~~~Dg  261 (261)
                      +++|+|++++|++++.||
T Consensus       250 ~~~~~~~~~~l~~~~~dg  267 (408)
T 4a11_B          250 GLCFTSDGLHLLTVGTDN  267 (408)
T ss_dssp             EEEECTTSSEEEEEETTS
T ss_pred             EEEEcCCCCEEEEecCCC
Confidence            999999999999999886

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.2e-29  Score=190.47  Aligned_cols=224  Identities=13%  Similarity=0.175  Sum_probs=173.7

Q ss_pred             eEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeee
Q psy6859           6 ITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIK   85 (261)
Q Consensus         6 v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~   85 (261)
                      +++|+||++++||+| .|++|+|||++++.......+.+|...|++++|+|++++|++|+.||+|++||+.+++.+..+.
T Consensus        28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             CBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence            467999996677766 5999999999987333333445788889999999999999999999999999999999998887


Q ss_pred             ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce-eeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEE
Q psy6859          86 LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM-INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHI  164 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  164 (261)
                      .+...  ...+...+..+++.    +.++.+.+|+...... +..+..  +...+..+.+.+++..  +++++.|+.|++
T Consensus       107 ~h~~~--~~~~~~~~~~l~s~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--l~s~~~d~~i~i  176 (318)
T 4ggc_A          107 SHSAR--VGSLSWNSYILSSG----SRSGHIHHHDVRVAEHHVATLSG--HSQEVCGLRWAPDGRH--LASGGNDNLVNV  176 (318)
T ss_dssp             CCSSC--EEEEEEETTEEEEE----ETTSEEEEEETTSSSCEEEEEEC--CSSCEEEEEECTTSSE--EEEEETTSCEEE
T ss_pred             Cccce--EEEeecCCCEEEEE----ecCCceEeeecCCCceeEEEEcC--ccCceEEEEEcCCCCE--EEEEecCcceeE
Confidence            66544  44556666665555    8999999999887643 344443  4557889999999975  889999999999


Q ss_pred             EEccCCCcc----ceeeccCcccCeEEEEEcCCCCE---EEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         165 YDCKGNGTP----LHVLDRLHTKPVVLIKFNPIYQV---VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       165 ~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~---l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      ||++ +++.    ..... .+...|..+.++|++..   +++++.++.|++||.+.               ..... ...
T Consensus       177 wd~~-~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~---------------~~~~~-~~~  238 (318)
T 4ggc_A          177 WPSA-PGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---------------GACLS-AVD  238 (318)
T ss_dssp             EESS-CBTTBSCCSEEEC-CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT---------------CCEEE-EEE
T ss_pred             EECC-CCcccccceeeec-ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc---------------ccccc-ccc
Confidence            9998 6543    23333 67889999999998763   35678899999999854               22222 234


Q ss_pred             CccceeeeeECCCCceEEEee
Q psy6859         238 NKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      +...+..+.|+|+++.+++++
T Consensus       239 ~~~~v~~~~~~~~~~~~~~~s  259 (318)
T 4ggc_A          239 AHSQVCSILWSPHYKELISGH  259 (318)
T ss_dssp             CSSCEEEEEEETTTTEEEEEE
T ss_pred             ceeeeeeeeecccccceEEEE
Confidence            667899999999999888765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=2.1e-29  Score=198.60  Aligned_cols=227  Identities=14%  Similarity=0.097  Sum_probs=185.4

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeE-----EeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVK-----HFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      ..+.+++|+| +.++++++.|+.|++||+.++  +...     .+.+|.+.|.+++|+++++++++++.|+.|++||+.+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTC--CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCC--eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence            3466899999 778888889999999999876  4444     3457888999999999999999999999999999999


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ++.+..+..+......+.++++++.+++.   ++.++.|++||+++++.+..+...   ..+.+++++|++..  +++++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~--l~~~~  272 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDPIRDLVYCS---NWISEDISVIDRKTKLEIRKTDKI---GLPRGLLLSKDGKE--LYIAQ  272 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEETTTTEEEEE---ETTTTEEEEEETTTTEEEEECCCC---SEEEEEEECTTSSE--EEEEE
T ss_pred             ceEEEEEcCCCCCeeEEEEcCCCCEEEEE---ecCCCcEEEEECCCCcEEEEecCC---CCceEEEEcCCCCE--EEEEE
Confidence            99888887777777888888888866543   367999999999998877766543   35899999999986  44444


Q ss_pred             --------CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeecccccccCCeeeeeeccc
Q psy6859         158 --------DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYKQEFKFPKCVHFESKL  228 (261)
Q Consensus       158 --------~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  228 (261)
                              .|+.|++||++ +++.+..+  .+...+.+++|+|+++.+ ++++.|+.|++||+.+               
T Consensus       273 ~~~~~~~~~dg~i~~~d~~-~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---------------  334 (433)
T 3bws_A          273 FSASNQESGGGRLGIYSMD-KEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---------------  334 (433)
T ss_dssp             EESCTTCSCCEEEEEEETT-TTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT---------------
T ss_pred             CCCCccccCCCeEEEEECC-CCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC---------------
Confidence                    48899999998 78777777  467789999999999755 6678999999999854               


Q ss_pred             ccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         229 DTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       229 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ++.+..+. +...+.+++|+|+|++|++++.
T Consensus       335 ~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          335 KKVQKSIP-VFDKPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             TEEEEEEE-CSSSEEEEEECTTSSEEEEEEC
T ss_pred             CcEEEEec-CCCCCCeEEEcCCCCEEEEEec
Confidence            44444444 5677899999999999988876

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=7.7e-28  Score=187.25  Aligned_cols=214  Identities=13%  Similarity=0.126  Sum_probs=175.6

Q ss_pred             eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEE-EEEeCCCcEEEEEccccceeeeeeccCcceeEE
Q psy6859          16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVINFDMINMIKLDFTPLTVE   94 (261)
Q Consensus        16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   94 (261)
                      ++++++.|+.|++||+.++  +.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. ....+
T Consensus         4 l~vs~~~d~~v~v~d~~~~--~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSN--KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEETTTTEEEEEETTTT--EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred             EEEEcCCCCEEEEEECCCC--eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence            5788999999999999987  7777887664 58999999999977 677789999999999999988887665 56778


Q ss_pred             EEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccc
Q psy6859          95 CIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPL  174 (261)
Q Consensus        95 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  174 (261)
                      .++++++.++..   ++.++.|++||+.+++.+..+..+   ..+.+++|+|++.. ++++++.++.|++||+. +++.+
T Consensus        80 ~~spdg~~l~~~---~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~-l~~~~~~~~~v~~~d~~-~~~~~  151 (391)
T 1l0q_A           80 AVSPDGKQVYVT---NMASSTLSVIDTTSNTVAGTVKTG---KSPLGLALSPDGKK-LYVTNNGDKTVSVINTV-TKAVI  151 (391)
T ss_dssp             EECTTSSEEEEE---ETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSE-EEEEETTTTEEEEEETT-TTEEE
T ss_pred             EECCCCCEEEEE---ECCCCEEEEEECCCCeEEEEEeCC---CCcceEEECCCCCE-EEEEeCCCCEEEEEECC-CCcEE
Confidence            888888866544   367899999999999888777643   35789999999975 35788889999999998 88888


Q ss_pred             eeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCce
Q psy6859         175 HVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNK  253 (261)
Q Consensus       175 ~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  253 (261)
                      ..+. . ...+..++|+|++++| ++++.++.|++||+++               ++.+..+. +...+.+++|+|+|++
T Consensus       152 ~~~~-~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~---------------~~~~~~~~-~~~~~~~~~~~~~g~~  213 (391)
T 1l0q_A          152 NTVS-V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---------------NSVIDTVK-VEAAPSGIAVNPEGTK  213 (391)
T ss_dssp             EEEE-C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---------------TEEEEEEE-CSSEEEEEEECTTSSE
T ss_pred             EEEe-c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---------------CeEEEEEe-cCCCccceEECCCCCE
Confidence            8885 3 4567999999999977 6778899999999954               34444443 4567899999999999


Q ss_pred             EEEeec
Q psy6859         254 FVTISM  259 (261)
Q Consensus       254 l~s~~~  259 (261)
                      |++++.
T Consensus       214 l~~~~~  219 (391)
T 1l0q_A          214 AYVTNV  219 (391)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            998873

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=1e-26  Score=173.88  Aligned_cols=233  Identities=10%  Similarity=0.038  Sum_probs=169.6

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC-CceeeeEEeecc-ccceeEEEEeeCCCEEEEEe--CCCcEEEEEc-
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQE-EGIEFVKHFRSH-LGVIHSICTNYNGTLLCTVA--SDKAMKVFDV-   75 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~--~dg~v~~wd~-   75 (261)
                      |...|.+++|+| +++|++++ ++.|.+|++.+ .  +.......+ ...+.+++|+|++++|++++  .++...||.+ 
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~  116 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLP  116 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC--SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred             CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC--CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence            678899999999 88888876 78999999988 6  444455555 36789999999999999998  3345555554 


Q ss_pred             -cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC--CCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          76 -INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK--GNDMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                       .+++ ...+.... ......++++++.++..   +..++.+.+|+++  +++. ..+  ......+.++.|+|++.. +
T Consensus       117 ~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~---~~~~~~~~l~~~~~~~~~~-~~~--~~~~~~~~~~~~s~dg~~-l  187 (297)
T 2ojh_A          117 STGGT-PRLMTKNL-PSYWHGWSPDGKSFTYC---GIRDQVFDIYSMDIDSGVE-TRL--THGEGRNDGPDYSPDGRW-I  187 (297)
T ss_dssp             TTCCC-CEECCSSS-SEEEEEECTTSSEEEEE---EEETTEEEEEEEETTTCCE-EEC--CCSSSCEEEEEECTTSSE-E
T ss_pred             CCCCc-eEEeecCC-CccceEECCCCCEEEEE---ECCCCceEEEEEECCCCcc-eEc--ccCCCccccceECCCCCE-E
Confidence             4443 33333222 35566788888876633   2578889999854  3433 222  224457899999999985 3


Q ss_pred             EEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCC-----------CeEEEeecccccccCCee
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----------GILEYWSGYKQEFKFPKC  221 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~  221 (261)
                      ++++..++.+++|++...+..+..+. .+...+..++|+|++++|++++.+           +.|.+||+.++       
T Consensus       188 ~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~-------  259 (297)
T 2ojh_A          188 YFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG-------  259 (297)
T ss_dssp             EEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC-------
T ss_pred             EEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC-------
Confidence            44555688999999874455667776 778889999999999999887765           56999998642       


Q ss_pred             eeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         222 VHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                            ....+..+.+|...+..++|+|+|++|++++.|
T Consensus       260 ------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          260 ------NVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             ------SCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             ------CceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence                  122344455678899999999999999988876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=3.9e-26  Score=178.80  Aligned_cols=221  Identities=10%  Similarity=0.016  Sum_probs=167.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCC---eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCCc--EEEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDG---HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKA--MKVF   73 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~--v~~w   73 (261)
                      +|...|.+++|+| +++|++++.++   .|++||+.++  +.. .+..|...+.+++|+|||++|+ +++.++.  |++|
T Consensus       176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~  252 (415)
T 2hqs_A          176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  252 (415)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--cEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEE
Confidence            4778999999999 89999998885   9999999886  333 4666888999999999999888 6666654  9999


Q ss_pred             EccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC--eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCce
Q psy6859          74 DVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS--RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPT  151 (261)
Q Consensus        74 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (261)
                      |+.+++.. .+..+........++++++.++..   +..++  .|.+||+.+++.. .+..  +...+..+.|+|++.++
T Consensus       253 d~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~~---s~~~g~~~i~~~d~~~~~~~-~l~~--~~~~~~~~~~spdG~~l  325 (415)
T 2hqs_A          253 DLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFT---SDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQDADVSSDGKFM  325 (415)
T ss_dssp             ETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEE---ECTTSSCEEEEEETTSSCCE-ECCC--SSSEEEEEEECTTSSEE
T ss_pred             ECCCCCEE-eCcCCCCcccceEECCCCCEEEEE---ECCCCCcEEEEEECCCCCEE-EEec--CCCcccCeEECCCCCEE
Confidence            99887653 444445556778888999877665   12344  7888899887643 2222  34477899999999863


Q ss_pred             EEEEecC--CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC---eEEEeecccccccCCeeeeeec
Q psy6859         152 AAVSDQD--SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG---ILEYWSGYKQEFKFPKCVHFES  226 (261)
Q Consensus       152 ~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~  226 (261)
                       ++++..  +..|++||+. +++. ..+. .+. .+.+++|+|+|++|++++.++   .|.+||+.              
T Consensus       326 -~~~~~~~g~~~i~~~d~~-~~~~-~~l~-~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~--------------  386 (415)
T 2hqs_A          326 -VMVSSNGGQQHIAKQDLA-TGGV-QVLS-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD--------------  386 (415)
T ss_dssp             -EEEEECSSCEEEEEEETT-TCCE-EECC-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT--------------
T ss_pred             -EEEECcCCceEEEEEECC-CCCE-EEec-CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC--------------
Confidence             233333  3589999998 6655 4454 444 899999999999998888776   79999974              


Q ss_pred             ccccceeecCCCccceeeeeECCCCc
Q psy6859         227 KLDTDLFEFAKNKTYPSGLSFSPDGN  252 (261)
Q Consensus       227 ~~~~~~~~~~~~~~~v~~~~~s~~~~  252 (261)
                        ++....+..|.+.|.+++|+|...
T Consensus       387 --g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          387 --GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             --SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             --CCcEEEeeCCCCCCcCCccccccc
Confidence              456778888999999999999754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1e-26  Score=182.12  Aligned_cols=216  Identities=8%  Similarity=-0.034  Sum_probs=160.4

Q ss_pred             CCeEEEecCC------CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC---cEEEEEccccceeeee
Q psy6859          14 TDFVITASND------GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK---AMKVFDVINFDMINMI   84 (261)
Q Consensus        14 ~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~v~~wd~~~~~~~~~~   84 (261)
                      +..++.++.+      +.|++||++..   ....+.+|...+.+++|+||+++|++++.++   .|++||+.+++... +
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~---~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l  218 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY---NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V  218 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC---SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC---CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e
Confidence            4566666554      79999999753   4566777899999999999999999999875   99999999887654 3


Q ss_pred             eccCcceeEEEEeecCCceeeeeeecCCC--CeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec-CCC-
Q psy6859          85 KLDFTPLTVECIHYLGDAIPTAAVSDQDS--SRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-DSS-  160 (261)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~-  160 (261)
                      ..+........++|+++.++..   ++.+  ..|.+||+++++.. .+.  .+...+.++.|+|++..  ++.++ .++ 
T Consensus       219 ~~~~~~~~~~~~spdg~~la~~---~~~~g~~~i~~~d~~~~~~~-~l~--~~~~~~~~~~~spdg~~--l~~~s~~~g~  290 (415)
T 2hqs_A          219 ASFPRHNGAPAFSPDGSKLAFA---LSKTGSLNLYVMDLASGQIR-QVT--DGRSNNTEPTWFPDSQN--LAFTSDQAGR  290 (415)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEE---ECTTSSCEEEEEETTTCCEE-ECC--CCSSCEEEEEECTTSSE--EEEEECTTSS
T ss_pred             ecCCCcccCEEEcCCCCEEEEE---EecCCCceEEEEECCCCCEE-eCc--CCCCcccceEECCCCCE--EEEEECCCCC
Confidence            3344556778889999877633   2444  45999999988653 332  24457889999999986  33333 344 


Q ss_pred             -eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCC---CeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         161 -HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA---GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       161 -~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                       .|++||+. +++ ...+. .+...+.+++|+|+|++|++++.+   ..|.+||+.+               ++. ..+.
T Consensus       291 ~~i~~~d~~-~~~-~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~---------------~~~-~~l~  351 (415)
T 2hqs_A          291 PQVYKVNIN-GGA-PQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---------------GGV-QVLS  351 (415)
T ss_dssp             CEEEEEETT-SSC-CEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT---------------CCE-EECC
T ss_pred             cEEEEEECC-CCC-EEEEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC---------------CCE-EEec
Confidence             67778887 554 34454 567788999999999999887754   5899999854               333 3445


Q ss_pred             CCccceeeeeECCCCceEEEeecCC
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .+. .+.+++|+|||++|++++.|+
T Consensus       352 ~~~-~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          352 STF-LDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             CSS-SCEEEEECTTSSEEEEEEEET
T ss_pred             CCC-CcCCeEEcCCCCEEEEEEcCC
Confidence            554 889999999999999888653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.4e-24  Score=165.76  Aligned_cols=240  Identities=10%  Similarity=0.113  Sum_probs=165.3

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCC-CeEEEEecc--CCceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CCcEEEEEcc
Q psy6859           2 HRSPITHVVVTK-TDFVITASND-GHIKFWKKQ--EEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DKAMKVFDVI   76 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d-~~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~   76 (261)
                      |...+.+++|+| +++|++++.+ +.|.+|+++  ++..+.+..+..+. .+..++|+|+++++++++. ++.|.+||+.
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            456788999999 8878877776 999999997  44445555665444 7899999999998877664 8899999994


Q ss_pred             ---ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-CceeeEE--eecC-CcceEEEEEEeCCCC
Q psy6859          77 ---NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMI--KLDF-TPLTVECIHYLGDAI  149 (261)
Q Consensus        77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~--~~~~-~~~~~~~~~~~~~~~  149 (261)
                         ..+....+.... ....+.++++++.+++.   ...++.|.+||+.+ ++.....  .... ....+..+.|+|++.
T Consensus       115 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~---~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~  190 (343)
T 1ri6_A          115 DGLPVGVVDVVEGLD-GCHSANISPDNRTLWVP---ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  190 (343)
T ss_dssp             TTEEEEEEEEECCCT-TBCCCEECTTSSEEEEE---EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             CCccccccccccCCC-CceEEEECCCCCEEEEe---cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC
Confidence               444444444333 35567788888876654   23789999999987 5443322  1111 223677899999998


Q ss_pred             ceEEEEecCCCeEEEEEccC-CCcc--ceeec---cC--cccCeEEEEEcCCCCEEE-EEcCCCeEEEeecccccccCCe
Q psy6859         150 PTAAVSDQDSSHVHIYDCKG-NGTP--LHVLD---RL--HTKPVVLIKFNPIYQVVV-SVDKAGILEYWSGYKQEFKFPK  220 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d~~~-~~~~--~~~~~---~~--~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~  220 (261)
                      + +++++..++.|.+||+.. +++.  ...+.   ..  ....+..++|+|++++|+ +...++.|.+||+....     
T Consensus       191 ~-l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~-----  264 (343)
T 1ri6_A          191 Y-AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG-----  264 (343)
T ss_dssp             E-EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----
T ss_pred             E-EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC-----
Confidence            5 355666789999999962 2322  22221   01  134577899999999776 55589999999986210     


Q ss_pred             eeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         221 CVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                            ...+.+..+..+.. +..++|+|+|++|++++.
T Consensus       265 ------~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~  296 (343)
T 1ri6_A          265 ------SVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQ  296 (343)
T ss_dssp             ------CCEEEEEEEECSSS-CCCEEECTTSSEEEEECT
T ss_pred             ------CceEEeeeecCCCc-cceEEECCCCCEEEEecC
Confidence                  11233444444444 889999999998888774

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=3.9e-24  Score=163.82  Aligned_cols=238  Identities=11%  Similarity=0.132  Sum_probs=163.7

Q ss_pred             CCeEEEEEcC-CCeEEEecC---CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEcc-c
Q psy6859           4 SPITHVVVTK-TDFVITASN---DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVI-N   77 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~-~   77 (261)
                      ..+..++|+| ++ |++++.   ++.|.+|++.++..+.+..+..+...+..++|+|++++|++++ .++.+.+|++. +
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~  118 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD  118 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred             CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence            4566799999 76 555543   6899999998765456666666778889999999999888887 67899999996 2


Q ss_pred             cc--eeeeeeccC---------cceeEEEEeecCCceeeeeeecCCCCeEEEEEcC-CCceeeEEeecC-CcceEEEEEE
Q psy6859          78 FD--MINMIKLDF---------TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK-GNDMINMIKLDF-TPLTVECIHY  144 (261)
Q Consensus        78 ~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~~~~~~-~~~~~~~~~~  144 (261)
                      +.  .+..+....         .....+.++++++ +++.   ...++.|.+|++. +++......... .......++|
T Consensus       119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~---~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI---DLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE---ETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             CCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE---eCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            32  333332211         1245578888888 4332   3678899999998 454332222111 2225678999


Q ss_pred             eCCCCceEEEEecCCCeEEEEEccC-CCcc--ceeeccCcc------cCeEEEEEcCCCCEE-EEEcCCCeEEEeecccc
Q psy6859         145 LGDAIPTAAVSDQDSSHVHIYDCKG-NGTP--LHVLDRLHT------KPVVLIKFNPIYQVV-VSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       145 ~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~--~~~~~~~~~------~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~  214 (261)
                      +|++.+ +++++..++.|.+|++.. +++.  +..+. ...      ..+..++|+|+|++| ++...++.|.+|++...
T Consensus       195 spdg~~-l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~  272 (347)
T 3hfq_A          195 SPDGQY-AFLAGELSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD  272 (347)
T ss_dssp             CTTSSE-EEEEETTTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred             CCCCCE-EEEEeCCCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence            999985 356667789999999872 1322  22332 111      458899999999987 45557899999998531


Q ss_pred             cccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         215 EFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                                  ...+.+..+..+...+..++|+|||++|++++.+
T Consensus       273 ------------g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          273 ------------GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             ------------GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred             ------------CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence                        1123444555566678999999999999888764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=2.8e-24  Score=173.33  Aligned_cols=235  Identities=9%  Similarity=0.036  Sum_probs=176.1

Q ss_pred             eEEEEEcC-CCeEEEecCCCeEEEEec--cCCceeeeEEeeccccceeEEEEee----CCCEEEEEeC-CCcEEEEEccc
Q psy6859           6 ITHVVVTK-TDFVITASNDGHIKFWKK--QEEGIEFVKHFRSHLGVIHSICTNY----NGTLLCTVAS-DKAMKVFDVIN   77 (261)
Q Consensus         6 v~~~~~~~-~~~l~s~~~d~~i~iw~~--~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~~~-dg~v~~wd~~~   77 (261)
                      +.+++|+| +++|++++.|++|.+||+  .+.  +.+.++.. ...+..++|+|    |++++++++. +++|.+||..+
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t  257 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  257 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence            88999999 999999999999999999  555  67777774 45679999999    9999999884 89999999999


Q ss_pred             cceeeeeeccC-----------cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC
Q psy6859          78 FDMINMIKLDF-----------TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG  146 (261)
Q Consensus        78 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (261)
                      ++++..+....           .....+.+++++..++.   +...++.|.+||+.+.+.+...... ....+..+.|+|
T Consensus       258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v---s~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp  333 (543)
T 1nir_A          258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV---NVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS  333 (543)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE---EETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT
T ss_pred             cccceeecccCcccCccccccCCceEEEEECCCCCEEEE---EECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC
Confidence            99888776421           12345566665554432   2378999999999887655422221 233567889999


Q ss_pred             CCCceEEEEecCCCeEEEEEccCCCccceeecc---CcccCeEEEEEcCC-CCEEEEEc-CCCeEEEeecccccccCCee
Q psy6859         147 DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR---LHTKPVVLIKFNPI-YQVVVSVD-KAGILEYWSGYKQEFKFPKC  221 (261)
Q Consensus       147 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~  221 (261)
                      ++.++ ++++..+++|.+||.. +++++..+..   .|......+ ++|+ +++++++. .|++|.+||+.+...     
T Consensus       334 dg~~l-~va~~~~~~v~v~D~~-tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~-----  405 (543)
T 1nir_A          334 SHRYF-MTAANNSNKVAVIDSK-DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH-----  405 (543)
T ss_dssp             TSCEE-EEEEGGGTEEEEEETT-TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC-----
T ss_pred             CCCEE-EEEecCCCeEEEEECC-CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC-----
Confidence            99863 5566678999999999 8888887761   254433333 5777 56667775 689999999864100     


Q ss_pred             eeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         222 VHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                         .....++++++..|...+..++|+|+|++|++++
T Consensus       406 ---~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          406 ---PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             ---TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             ---chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence               0012677888999988999999999999999886

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=3.5e-23  Score=158.68  Aligned_cols=229  Identities=14%  Similarity=0.104  Sum_probs=173.4

Q ss_pred             CeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeecccc---------ceeEEEEeeCCCEEEEEe--CCCcEE
Q psy6859           5 PITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLG---------VIHSICTNYNGTLLCTVA--SDKAMK   71 (261)
Q Consensus         5 ~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~--~dg~v~   71 (261)
                      .+..++|+| ++ .+++...++.|.+||..++  +.+..+..+..         .+.+++|+|+++++++++  .++.|.
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTG--EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCC--eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence            456789999 77 4556677899999999887  55555654432         268899999999887776  478899


Q ss_pred             EEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC--CcceEEEEEEeCCCC
Q psy6859          72 VFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF--TPLTVECIHYLGDAI  149 (261)
Q Consensus        72 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  149 (261)
                      +||..+++.+..+...........++++++.++..    +.++.|.+||+.+++.+..+....  ....+..++++|++.
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~----~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  243 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTT----NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ  243 (353)
T ss_dssp             EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEE----CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred             EEcCCCCceEEEecCCCCccceEEECCCCCEEEEE----cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence            99999998888877444445567788888877776    779999999999998887776522  234577899999998


Q ss_pred             ceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEE-EcCCCeEEEeecccccccCCeeeeeeccc
Q psy6859         150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVS-VDKAGILEYWSGYKQEFKFPKCVHFESKL  228 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  228 (261)
                      .+ +++...++.|.+||.. +++.+..+. ...  ...++|+|+++++++ ...++.|.+||+.+               
T Consensus       244 ~l-~~~~~~~~~v~~~d~~-~~~~~~~~~-~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---------------  303 (353)
T 3vgz_A          244 RA-FITDSKAAEVLVVDTR-NGNILAKVA-APE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS---------------  303 (353)
T ss_dssp             EE-EEEESSSSEEEEEETT-TCCEEEEEE-CSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT---------------
T ss_pred             EE-EEEeCCCCEEEEEECC-CCcEEEEEE-cCC--CceEEECCCCCEEEEEECCCCeEEEEECCC---------------
Confidence            63 5566667999999998 888888775 322  256999999996654 44789999999854               


Q ss_pred             ccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         229 DTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       229 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      ++.+..+.. ...+.+++|+|||++|+++..+
T Consensus       304 ~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          304 YKVVKTFDT-PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TEEEEEEEC-CSEEEEEEECTTSCEEEEEEEC
T ss_pred             CeEEEEEec-CCCCCeEEEcCCCCEEEEEEcc
Confidence            444554443 3467899999999987776554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=9.3e-25  Score=183.02  Aligned_cols=232  Identities=8%  Similarity=-0.051  Sum_probs=167.2

Q ss_pred             CCCeEEEEEcC-CCeEEEecC-CC-----eEEEEeccCCceeeeEEeeccc------------------------cceeE
Q psy6859           3 RSPITHVVVTK-TDFVITASN-DG-----HIKFWKKQEEGIEFVKHFRSHL------------------------GVIHS   51 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~------------------------~~v~~   51 (261)
                      ...|.+++|+| |++|++++. |+     .|++||+.++  +....+..+.                        ..|.+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            35689999999 899999988 88     9999999887  4444444332                        34889


Q ss_pred             EEEeeCCCEEEEEeCCCcEEEEEccccc--eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE
Q psy6859          52 ICTNYNGTLLCTVASDKAMKVFDVINFD--MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM  129 (261)
Q Consensus        52 ~~~~~~~~~l~s~~~dg~v~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  129 (261)
                      ++|+|||++|++++. +.|++||+.++.  ....+..+........++|+++.++.+     .++.|.+||+.+++....
T Consensus       114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~-----~~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFI-----RGRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEE-----ETTEEEEEETTTTEEEEC
T ss_pred             eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEE-----eCCcEEEEecCCCCEEEe
Confidence            999999999999886 899999998872  333444444567788899999988766     357999999998865544


Q ss_pred             EeecCCc--------------ceEEEEEEeCCCCceEEEEecCCC---------------------------------eE
Q psy6859         130 IKLDFTP--------------LTVECIHYLGDAIPTAAVSDQDSS---------------------------------HV  162 (261)
Q Consensus       130 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~d~---------------------------------~i  162 (261)
                      .......              ..+..+.|+||+..  ++.++.|+                                 .|
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~--l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA--IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC--EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCE--EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            3322110              01467999999997  44443333                                 78


Q ss_pred             EEEEccCC-Cccceeecc-CcccCeEEEEEcCCCCEEEEEcC-----CCeEEEeecccccccCCeeeeeecccccceeec
Q psy6859         163 HIYDCKGN-GTPLHVLDR-LHTKPVVLIKFNPIYQVVVSVDK-----AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF  235 (261)
Q Consensus       163 ~i~d~~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  235 (261)
                      ++||+. + ++....... .+...+..++| |||++|+.++.     +..|.+||+.+               ++....+
T Consensus       266 ~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~---------------g~~~~~~  328 (741)
T 2ecf_A          266 GVISPA-EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS---------------NQQRVLA  328 (741)
T ss_dssp             EEECSS-TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT---------------CCEEEEE
T ss_pred             EEEECC-CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC---------------CceEEEE
Confidence            889987 6 655443321 36788999999 99998886653     56799999854               3333333


Q ss_pred             CCCcc----ceeeeeECCCCceEEEeecCC
Q psy6859         236 AKNKT----YPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       236 ~~~~~----~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..+..    .+..++|+|||+++++++.||
T Consensus       329 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  358 (741)
T 2ecf_A          329 HETSPTWVPLHNSLRFLDDGSILWSSERTG  358 (741)
T ss_dssp             EEECSSCCCCCSCCEECTTSCEEEEECTTS
T ss_pred             EcCCCCcCCcCCceEECCCCeEEEEecCCC
Confidence            33332    456899999999888887764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=2.2e-23  Score=158.61  Aligned_cols=237  Identities=11%  Similarity=0.065  Sum_probs=164.6

Q ss_pred             CCeEEEEEcC-CCeEEEe-cCCCeEEEEeccCCceee-eEEeeccccceeEEEEeeCCCEEEEEeCCC---cEEEEEccc
Q psy6859           4 SPITHVVVTK-TDFVITA-SNDGHIKFWKKQEEGIEF-VKHFRSHLGVIHSICTNYNGTLLCTVASDK---AMKVFDVIN   77 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~-~~d~~i~iw~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~v~~wd~~~   77 (261)
                      ..+ +++|+| +++++++ ..++.|.+||..++  +. ...+..+..+..+++|+|++++++++..++   .|.+||+.+
T Consensus        41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE--PPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             CEE-EEEECSSSCEEEEEESTTCEEEEEECSSS--SCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC--ceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            445 899999 7755554 45899999999886  44 566666666666699999999999555553   899999999


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCe-EEEEEcCCCceeeEE--eecCCcceEEEEEEeCCCCceEEE
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSR-VHIYDCKGNDMINMI--KLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      ++.+..+.....+ ..+.++++++.+++.   ...++. +.+|++.....+...  ...........+.|+|++.+ +++
T Consensus       118 ~~~~~~~~~~~~~-~~~~~spdg~~l~~~---~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~-l~v  192 (331)
T 3u4y_A          118 NKFISTIPIPYDA-VGIAISPNGNGLILI---DRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNF-AFV  192 (331)
T ss_dssp             TEEEEEEECCTTE-EEEEECTTSSCEEEE---EETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSE-EEE
T ss_pred             CCeEEEEECCCCc-cceEECCCCCEEEEE---ecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCE-EEE
Confidence            9888877765544 677888888766544   234567 999999864433211  11112335689999999985 366


Q ss_pred             EecCCCeEEEEEccCCCcc---ceeeccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCCeeeeeeccccc
Q psy6859         155 SDQDSSHVHIYDCKGNGTP---LHVLDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLDT  230 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  230 (261)
                      ++..++.|++||+. +++.   +..+.  ....+..++|+|+|++|+++. .++.|.+||+.+++......         
T Consensus       193 ~~~~~~~v~v~d~~-~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~---------  260 (331)
T 3u4y_A          193 ANLIGNSIGILETQ-NPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKS---------  260 (331)
T ss_dssp             EETTTTEEEEEECS-STTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEE---------
T ss_pred             EeCCCCeEEEEECC-CCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecc---------
Confidence            66778999999998 7877   77774  446678999999999776554 57889999986542210000         


Q ss_pred             ceeecCCCcc---ceeeeeECCCCceEEEeecC
Q psy6859         231 DLFEFAKNKT---YPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       231 ~~~~~~~~~~---~v~~~~~s~~~~~l~s~~~D  260 (261)
                      ....+..+..   ....++|+|||++|++++.+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  293 (331)
T 3u4y_A          261 FGHGLLIDPRPLFGANQMALNKTETKLFISANI  293 (331)
T ss_dssp             EECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred             cccccccCCCCcccccceEECCCCCEEEEecCC
Confidence            0001111122   22568999999998777654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=8.9e-23  Score=155.20  Aligned_cols=220  Identities=11%  Similarity=0.108  Sum_probs=161.4

Q ss_pred             EEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CCcEEEEEccccce-eeeee
Q psy6859          10 VVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DKAMKVFDVINFDM-INMIK   85 (261)
Q Consensus        10 ~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~~~~~-~~~~~   85 (261)
                      .|.+  +..+++++.++.|.+||..++  +....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~   80 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTL--EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ   80 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTC--CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccc--ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc
Confidence            3444  445788899999999999887  5556666556666 9999999997776665 88999999999887 66776


Q ss_pred             ccCcceeEEEEeecCCceeeeeeecCCC-C--eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe-
Q psy6859          86 LDFTPLTVECIHYLGDAIPTAAVSDQDS-S--RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH-  161 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~s~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-  161 (261)
                      ....+...+.++++++.+++.    ..+ +  .|.+||+.+++.+..+....   ....++|+|++.+ ++++...++. 
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~----~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~spdg~~-l~~~~~~~~~~  152 (331)
T 3u4y_A           81 EGQSSMADVDITPDDQFAVTV----TGLNHPFNMQSYSFLKNKFISTIPIPY---DAVGIAISPNGNG-LILIDRSSANT  152 (331)
T ss_dssp             ECSSCCCCEEECTTSSEEEEC----CCSSSSCEEEEEETTTTEEEEEEECCT---TEEEEEECTTSSC-EEEEEETTTTE
T ss_pred             cCCCCccceEECCCCCEEEEe----cCCCCcccEEEEECCCCCeEEEEECCC---CccceEECCCCCE-EEEEecCCCce
Confidence            666665547888998877733    333 3  99999999998888776543   4589999999986 3555566677 


Q ss_pred             EEEEEccCCCcc----ceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeecccccccCCeeeeeecccccc---ee
Q psy6859         162 VHIYDCKGNGTP----LHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTD---LF  233 (261)
Q Consensus       162 i~i~d~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~  233 (261)
                      |.+|++...+..    ...+  .....+..++|+|+|++| +++..++.|.+||+.+               ++.   +.
T Consensus       153 i~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~---------------~~~~~~~~  215 (331)
T 3u4y_A          153 VRRFKIDADGVLFDTGQEFI--SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN---------------PENITLLN  215 (331)
T ss_dssp             EEEEEECTTCCEEEEEEEEE--CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS---------------TTSCEEEE
T ss_pred             EEEEEECCCCcEeecCCccc--cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC---------------Ccccceee
Confidence            999999733322    1222  344568999999999966 5555789999999854               333   44


Q ss_pred             ecCCCccceeeeeECCCCceEEEee
Q psy6859         234 EFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       234 ~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      .+.. ...+..++|+|||++|+.++
T Consensus       216 ~~~~-~~~~~~~~~spdg~~l~v~~  239 (331)
T 3u4y_A          216 AVGT-NNLPGTIVVSRDGSTVYVLT  239 (331)
T ss_dssp             EEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred             eccC-CCCCceEEECCCCCEEEEEE
Confidence            4443 36678999999999877654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=1.6e-23  Score=156.42  Aligned_cols=218  Identities=11%  Similarity=0.015  Sum_probs=158.9

Q ss_pred             EecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeeeeecc-CcceeEEEE
Q psy6859          19 TASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMINMIKLD-FTPLTVECI   96 (261)
Q Consensus        19 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~-~~~~~~~~~   96 (261)
                      .++.|+.|++||+.++  +.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ........+
T Consensus        17 ~~~~~~~i~~~d~~~~--~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~   92 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR--KMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI   92 (297)
T ss_dssp             -CCCCEEEEEEETTTT--EEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred             CCCcceeEEEEeCCCC--cee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence            4578899999999886  443 4455888999999999999999876 78999999998 7766555433 244566788


Q ss_pred             eecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcccee
Q psy6859          97 HYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHV  176 (261)
Q Consensus        97 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  176 (261)
                      +++++.++...........|..+++.+++ ...+...   ..+..+.|+|++..+ ++++..++.+++|++.........
T Consensus        93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~---~~~~~~~~spdg~~l-~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN---LPSYWHGWSPDGKSF-TYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             CTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS---SSEEEEEECTTSSEE-EEEEEETTEEEEEEEETTTCCEEE
T ss_pred             CCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC---CCccceEECCCCCEE-EEEECCCCceEEEEEECCCCcceE
Confidence            89988777661111123455555655554 2333222   247888999999863 446667899999997533444555


Q ss_pred             eccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEE
Q psy6859         177 LDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV  255 (261)
Q Consensus       177 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  255 (261)
                      +. .+...+.+++|+|++++|+.++ .++.+++|++..              ....+..+..|...+..++|+|+|++|+
T Consensus       168 ~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~  232 (297)
T 2ojh_A          168 LT-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV--------------DGSSVERITDSAYGDWFPHPSPSGDKVV  232 (297)
T ss_dssp             CC-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET--------------TSSCEEECCCCSEEEEEEEECTTSSEEE
T ss_pred             cc-cCCCccccceECCCCCEEEEEecCCCCccEEEECC--------------CCCCcEEEecCCcccCCeEECCCCCEEE
Confidence            55 6788899999999999887655 689999999852              2345566777888899999999999999


Q ss_pred             EeecC
Q psy6859         256 TISMD  260 (261)
Q Consensus       256 s~~~D  260 (261)
                      +++.|
T Consensus       233 ~~~~~  237 (297)
T 2ojh_A          233 FVSYD  237 (297)
T ss_dssp             EEEEE
T ss_pred             EEEcC
Confidence            88765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=2.9e-23  Score=167.40  Aligned_cols=222  Identities=11%  Similarity=0.060  Sum_probs=169.3

Q ss_pred             EEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEc--cccceeeeeec
Q psy6859          10 VVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDV--INFDMINMIKL   86 (261)
Q Consensus        10 ~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~--~~~~~~~~~~~   86 (261)
                      +++| +..+++++.|++|.+||..++  +.+.++..+.. +..++|+||+++|++++.|+.|++||+  .+++.+..+..
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~--~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSK--KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTC--CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCc--eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence            3778 778899999999999999887  67777773333 889999999999999999999999999  78888888875


Q ss_pred             cCcceeEEEEee----cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC--------C-cceEEEEEEeCCCCceEE
Q psy6859          87 DFTPLTVECIHY----LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF--------T-PLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        87 ~~~~~~~~~~~~----~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~  153 (261)
                      ... ...+.+++    +++.+++.   ...+++|.+||..+.+++..+....        + ...+..+.++|++.. ++
T Consensus       221 g~~-p~~va~sp~~~~dg~~l~v~---~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~-~~  295 (543)
T 1nir_A          221 GIE-ARSVESSKFKGYEDRYTIAG---AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE-FI  295 (543)
T ss_dssp             CSE-EEEEEECCSTTCTTTEEEEE---EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE-EE
T ss_pred             CCC-cceEEeCCCcCCCCCEEEEE---EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE-EE
Confidence            444 46677888    88877765   1258999999999999988886531        1 226889999998875 47


Q ss_pred             EEecCCCeEEEEEccCCCccce--eeccCcccCeEEEEEcCCCCEEEE-EcCCCeEEEeecccccccCCeeeeeeccccc
Q psy6859         154 VSDQDSSHVHIYDCKGNGTPLH--VLDRLHTKPVVLIKFNPIYQVVVS-VDKAGILEYWSGYKQEFKFPKCVHFESKLDT  230 (261)
Q Consensus       154 ~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  230 (261)
                      ++...++.|.+||+. +.+.+.  .+  .+...+..+.|+|+|++|++ +..+++|.+||+.+               ++
T Consensus       296 vs~~~~g~i~vvd~~-~~~~l~~~~i--~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t---------------g~  357 (543)
T 1nir_A          296 VNVKETGKVLLVNYK-DIDNLTVTSI--GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD---------------RR  357 (543)
T ss_dssp             EEETTTTEEEEEECT-TSSSCEEEEE--ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT---------------TE
T ss_pred             EEECCCCeEEEEEec-CCCcceeEEe--ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC---------------Ce
Confidence            788889999999998 655444  44  35667889999999997754 45689999999954               44


Q ss_pred             ceeecCC----CccceeeeeECCC-CceEEEee
Q psy6859         231 DLFEFAK----NKTYPSGLSFSPD-GNKFVTIS  258 (261)
Q Consensus       231 ~~~~~~~----~~~~v~~~~~s~~-~~~l~s~~  258 (261)
                      ++..+..    |.+....+ ++|+ +..+++++
T Consensus       358 l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~  389 (543)
T 1nir_A          358 LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH  389 (543)
T ss_dssp             EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred             EEEeeccCCCCCCCCCccc-CCCCCccEEEecc
Confidence            5544442    54433333 4676 66666654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=5.2e-24  Score=173.90  Aligned_cols=224  Identities=12%  Similarity=0.055  Sum_probs=162.4

Q ss_pred             CCCeEEEEEcC-CCeEEEecC-CCeEEEEeccCCceeeeEEeeccc-cceeEEEEeeCCCEEEEEeC---CCcEEEEEcc
Q psy6859           3 RSPITHVVVTK-TDFVITASN-DGHIKFWKKQEEGIEFVKHFRSHL-GVIHSICTNYNGTLLCTVAS---DKAMKVFDVI   76 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~---dg~v~~wd~~   76 (261)
                      ..+|++++|+| |+.||+++. ||+++||+++++  +.. .+..|. ..+..++|+|| +.+++++.   +...++|.+.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--ETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--EEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCC--CcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence            35799999999 899998887 999999998765  443 344454 68999999999 77777765   4556676654


Q ss_pred             c---cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859          77 N---FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        77 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
                      .   +... .+.. ........++++++.++.+  + ..++.+.+||+.+++.........     ..+.|+||+..  +
T Consensus        97 ~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~--s-~~~~~~~l~d~~~g~~~~l~~~~~-----~~~~~spDG~~--l  164 (582)
T 3o4h_A           97 TSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFT--G-ATEDRVALYALDGGGLRELARLPG-----FGFVSDIRGDL--I  164 (582)
T ss_dssp             TTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEE--E-ECSSCEEEEEEETTEEEEEEEESS-----CEEEEEEETTE--E
T ss_pred             ccCCCccc-cccC-CCCceeeeeCCCCCeEEEE--e-cCCCCceEEEccCCcEEEeecCCC-----ceEEECCCCCE--E
Confidence            3   2222 2222 2223466888888765443  2 234445599999887655544322     68899999986  5


Q ss_pred             EEecCC----CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC--eEEEeecccccccCCeeeeeecc
Q psy6859         154 VSDQDS----SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG--ILEYWSGYKQEFKFPKCVHFESK  227 (261)
Q Consensus       154 ~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~  227 (261)
                      ++++.+    +.|++||+. +++.. .+. .+...+..++|+|||+.|+++..++  .|++||+.+              
T Consensus       165 a~~~~~~~~~~~i~~~d~~-~g~~~-~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~--------------  227 (582)
T 3o4h_A          165 AGLGFFGGGRVSLFTSNLS-SGGLR-VFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD--------------  227 (582)
T ss_dssp             EEEEEEETTEEEEEEEETT-TCCCE-EEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT--------------
T ss_pred             EEEEEcCCCCeEEEEEcCC-CCCce-Eee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC--------------
Confidence            544444    679999987 66544 565 7888899999999999999888888  899999854              


Q ss_pred             cccceeecCCCccceeeee--------ECCCCceEEEeecCC
Q psy6859         228 LDTDLFEFAKNKTYPSGLS--------FSPDGNKFVTISMDR  261 (261)
Q Consensus       228 ~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~s~~~Dg  261 (261)
                       ++.. .+.+|...+..++        |+|||.++++++.||
T Consensus       228 -~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          228 -GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             -CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             -CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence             4444 5667777888888        999998888888775

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=4.2e-24  Score=178.57  Aligned_cols=227  Identities=12%  Similarity=0.063  Sum_probs=160.3

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecccc---ceeEEEEeeCCCEEEEEeCC---------CcEE
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLG---VIHSICTNYNGTLLCTVASD---------KAMK   71 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~d---------g~v~   71 (261)
                      .+.+++|+| ++++++ +.||+|++||+.++  +....+..|..   .|.+++|+|||++|++++.+         +.+.
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCC--cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            367889999 786665 78999999999987  55566666654   49999999999999998764         7788


Q ss_pred             EEEccccceeeeeecc---CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc-----------
Q psy6859          72 VFDVINFDMINMIKLD---FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL-----------  137 (261)
Q Consensus        72 ~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----------  137 (261)
                      +||+.+++. ..+...   ........++|+++.++.+     .++.|++||+.+++............           
T Consensus        95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~-----~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~  168 (723)
T 1xfd_A           95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFI-----FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (723)
T ss_dssp             EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEE-----ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             EEECCCCce-EeccCCccccccccccEECCCCCEEEEE-----ECCeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence            999988875 222211   1224567889999988776     34899999999887665544322111           


Q ss_pred             -----eEEEEEEeCCCCceEEEEecC--------------------------------CCeEEEEEccCCCccceeeccC
Q psy6859         138 -----TVECIHYLGDAIPTAAVSDQD--------------------------------SSHVHIYDCKGNGTPLHVLDRL  180 (261)
Q Consensus       138 -----~~~~~~~~~~~~~~~~~~~~~--------------------------------d~~i~i~d~~~~~~~~~~~~~~  180 (261)
                           .+..+.|+||+..+++.+...                                +..|++||+. +++....+. .
T Consensus       169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~-~~~~~~~l~-~  246 (723)
T 1xfd_A          169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN-GPTHDLEMM-P  246 (723)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS-SSCCCEECC-C
T ss_pred             EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC-CCceeEEee-C
Confidence                 236899999998743332211                                1279999998 776555664 3


Q ss_pred             c------ccCeEEEEEcCCCCEEEEEcC----CCeEEEeecccccccCCeeeeeecccccceeecCC-Cccce----eee
Q psy6859         181 H------TKPVVLIKFNPIYQVVVSVDK----AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-NKTYP----SGL  245 (261)
Q Consensus       181 ~------~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v----~~~  245 (261)
                      +      ...+..++|+|||++|++...    +..|++||+.+               ++....+.. +...+    ..+
T Consensus       247 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~---------------g~~~~~~~~~~~~~~~~~~~~~  311 (723)
T 1xfd_A          247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT---------------GVCTKKHEDESEAWLHRQNEEP  311 (723)
T ss_dssp             CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT---------------CCEEEEEEEECSSCCCCCCCCC
T ss_pred             CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC---------------CcceEEEEeccCCEEeccCCCc
Confidence            3      667899999999998876642    35799999854               333333322 33343    378


Q ss_pred             eECCCCceEEEe
Q psy6859         246 SFSPDGNKFVTI  257 (261)
Q Consensus       246 ~~s~~~~~l~s~  257 (261)
                      +|+|||+.|+..
T Consensus       312 ~~spdg~~l~~~  323 (723)
T 1xfd_A          312 VFSKDGRKFFFI  323 (723)
T ss_dssp             EECTTSCSEEEE
T ss_pred             eEcCCCCeEEEE
Confidence            999999988865

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=3.3e-23  Score=172.82  Aligned_cols=235  Identities=11%  Similarity=0.070  Sum_probs=167.9

Q ss_pred             CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-----c
Q psy6859           4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-----F   78 (261)
Q Consensus         4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-----~   78 (261)
                      ..|.+++|+|++.++.+ .++.|++||+.++  +.. .+..+...+..++|+|||++|+.+ .++.|++||+.+     +
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~--~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g  156 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLAR--KVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS  156 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTT--EEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCC--ceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence            56999999996444444 4599999999876  433 344466789999999999999985 789999999988     7


Q ss_pred             ceeeeeeccCcc--------------eeEEEEeecCCceeeeeee-----------------------------cCCCCe
Q psy6859          79 DMINMIKLDFTP--------------LTVECIHYLGDAIPTAAVS-----------------------------DQDSSR  115 (261)
Q Consensus        79 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~s-----------------------------~~~d~~  115 (261)
                      +...........              .....++++++.++...+.                             ...+..
T Consensus       157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            665543322221              3577899999988776321                             114578


Q ss_pred             EEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC-----eEEEEEccCCCccceeec-cCccc---CeE
Q psy6859         116 VHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS-----HVHIYDCKGNGTPLHVLD-RLHTK---PVV  186 (261)
Q Consensus       116 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~~~~-~~~~~---~v~  186 (261)
                      |.+||+.+++.........+...+..++|+|++..  +++++.++     .|++||+. +++....+. ..+..   .+.
T Consensus       237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~--l~~~~~~~~~~~~~v~~~d~~-~g~~~~~~~~~~~~~~~~~~~  313 (706)
T 2z3z_A          237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI--LYVAEVNRAQNECKVNAYDAE-TGRFVRTLFVETDKHYVEPLH  313 (706)
T ss_dssp             EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE--EEEEEECTTSCEEEEEEEETT-TCCEEEEEEEEECSSCCCCCS
T ss_pred             EEEEECCCCceEeeccCCCCceeEeeEEEECCCCE--EEEEEeCCCCCeeEEEEEECC-CCceeeEEEEccCCCeECccC
Confidence            99999998876544433234457899999999986  44433343     89999998 763333332 11222   246


Q ss_pred             EEEEcC--CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceee-eeECCCCceEEEeecC
Q psy6859         187 LIKFNP--IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSG-LSFSPDGNKFVTISMD  260 (261)
Q Consensus       187 ~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~D  260 (261)
                      .++|+|  +|++|++++.|+.+++|+++.              .+..+..+..+...+.. ++|+|+|+.|+.++.+
T Consensus       314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~--------------~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDT--------------TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             CCEECTTCSSEEEEEECTTSSCEEEEEET--------------TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             CceeecCCCCEEEEEEccCCccEEEEEEC--------------CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            789999  999999999999999998751              24556667777777877 7999999988766543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.92  E-value=5.8e-23  Score=161.48  Aligned_cols=200  Identities=10%  Similarity=0.050  Sum_probs=145.0

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc---------ee-----eeEEeeccccceeEEEEeeCCCEEE----E
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG---------IE-----FVKHFRSHLGVIHSICTNYNGTLLC----T   63 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~---------~~-----~~~~~~~~~~~v~~~~~~~~~~~l~----s   63 (261)
                      ...++.+++++ +.++++++.|+ +++|+.....         ..     ....+ .+...|.+++|+|++++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence            34578899999 88999998887 8888754210         00     01112 2567799999999999999    7


Q ss_pred             EeCCCcEEEEEcccc--------ce---eeeeeccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCCceeeEEe
Q psy6859          64 VASDKAMKVFDVINF--------DM---INMIKLDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK  131 (261)
Q Consensus        64 ~~~dg~v~~wd~~~~--------~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~  131 (261)
                      ++.|+.|++||+.++        +.   ...+..+...+..+.++++ +..++++    +.|++|++||++++..+....
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~----s~Dg~v~iwD~~~~~~~~~~~  189 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC----LADGSIAVLQVTETVKVCATL  189 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE----ETTSCEEEEEESSSEEEEEEE
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE----ECCCeEEEEEcCCCcceeecc
Confidence            889999999999765        22   2333335667788888887 5555555    899999999999885544333


Q ss_pred             ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec------cCcccCeEEEEEcCCCCEEEE-EcCCC
Q psy6859         132 LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD------RLHTKPVVLIKFNPIYQVVVS-VDKAG  204 (261)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~-~~~dg  204 (261)
                      .  +...+.+++|+|++.+  +++|+.|+.|++||.+  ++....+.      ..|...|.+++|++++.++++ ...||
T Consensus       190 ~--~~~~v~~v~wspdg~~--lasgs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg  263 (434)
T 2oit_A          190 P--STVAVTSVCWSPKGKQ--LAVGKQNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG  263 (434)
T ss_dssp             C--GGGCEEEEEECTTSSC--EEEEETTSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred             C--CCCceeEEEEcCCCCE--EEEEcCCCcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence            2  4568999999999987  8889999999999997  33444443      012348999999999887754 33443


Q ss_pred             ------eEEEeecccc
Q psy6859         205 ------ILEYWSGYKQ  214 (261)
Q Consensus       205 ------~i~iwd~~~~  214 (261)
                            .+++|+++..
T Consensus       264 ~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          264 TLETSPDVVMALLPKK  279 (434)
T ss_dssp             CSSSCCEEEEEECCCT
T ss_pred             ccCCCCceEEEEeccC
Confidence                  3899999753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=3.9e-22  Score=152.86  Aligned_cols=228  Identities=11%  Similarity=0.004  Sum_probs=168.1

Q ss_pred             CCeEEEEEcC-CCeEEEecC-------CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEE-EeCCCcEEEEE
Q psy6859           4 SPITHVVVTK-TDFVITASN-------DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCT-VASDKAMKVFD   74 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~v~~wd   74 (261)
                      ..+..++|+| ++++++++.       ++.|.+||..+.  +....+.. ...+..++|+|++++++. ...++.|.+||
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            4577899999 777777663       578999999887  56666653 345789999999996554 45579999999


Q ss_pred             ccccceeeeeeccCcc---------eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEe
Q psy6859          75 VINFDMINMIKLDFTP---------LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYL  145 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (261)
                      ..+++.+..+..+...         ...+.++++++.++...  ...++.|.+||+.+++.+..+....  ..+..+.++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~s  193 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISG--IGKESVIWVVDGGNIKLKTAIQNTG--KMSTGLALD  193 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEE--ESSSCEEEEEETTTTEEEEEECCCC--TTCCCCEEE
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEe--cCCCceEEEEcCCCCceEEEecCCC--CccceEEEC
Confidence            9999988877754321         35577888888766541  1358899999999998887776322  235678999


Q ss_pred             CCCCceEEEEecCCCeEEEEEccCCCccceeecc---CcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCCee
Q psy6859         146 GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR---LHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFPKC  221 (261)
Q Consensus       146 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~  221 (261)
                      |++..  +++++.++.|.+||.. +++.+..+..   ++...+..++|+|++++|++++ .++.|.+||+.+        
T Consensus       194 ~dg~~--l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--------  262 (353)
T 3vgz_A          194 SEGKR--LYTTNADGELITIDTA-DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN--------  262 (353)
T ss_dssp             TTTTE--EEEECTTSEEEEEETT-TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT--------
T ss_pred             CCCCE--EEEEcCCCeEEEEECC-CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC--------
Confidence            99986  5555669999999998 8887777651   2455688999999999776655 559999999854        


Q ss_pred             eeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         222 VHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                             ++.+..+....  ...++|+|+|++|+.++
T Consensus       263 -------~~~~~~~~~~~--~~~~~~s~dg~~l~v~~  290 (353)
T 3vgz_A          263 -------GNILAKVAAPE--SLAVLFNPARNEAYVTH  290 (353)
T ss_dssp             -------CCEEEEEECSS--CCCEEEETTTTEEEEEE
T ss_pred             -------CcEEEEEEcCC--CceEEECCCCCEEEEEE
Confidence                   44444444322  26799999999766655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=2.3e-23  Score=174.57  Aligned_cols=235  Identities=9%  Similarity=0.013  Sum_probs=168.6

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM   83 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~   83 (261)
                      .|.+++|+| +++|++++. +.|.+|++.++.......+..|...+..++|+|||++|+.++ ++.|++||+.+++....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence            378999999 888888886 999999998751003445667778899999999999999887 46999999988776554


Q ss_pred             eeccCcc----------------eeEEEEeecCCceeeeeeecC-----------------------------CCCeEEE
Q psy6859          84 IKLDFTP----------------LTVECIHYLGDAIPTAAVSDQ-----------------------------DSSRVHI  118 (261)
Q Consensus        84 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~s~~-----------------------------~d~~i~i  118 (261)
                      .......                .....++++++.++.....++                             ....|.+
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            3322221                256788999998877622111                             0017888


Q ss_pred             EEcCC-CceeeEEeecCCcceEEEEEEeCCCCceEEEEe---cCCCeEEEEEccCCCccceeeccCccc----CeEEEEE
Q psy6859         119 YDCKG-NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD---QDSSHVHIYDCKGNGTPLHVLDRLHTK----PVVLIKF  190 (261)
Q Consensus       119 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~----~v~~~~~  190 (261)
                      ||+.+ ++.........+...+..++| |++..+++.+.   ..+..|++||+. +++....+. .+..    .+..++|
T Consensus       268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~-~~~~~~~~~~~~~~~  344 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA-SNQQRVLAH-ETSPTWVPLHNSLRF  344 (741)
T ss_dssp             ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT-TCCEEEEEE-EECSSCCCCCSCCEE
T ss_pred             EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC-CCceEEEEE-cCCCCcCCcCCceEE
Confidence            99988 765443322234567899999 99987433332   235789999998 777666664 3332    4568899


Q ss_pred             cCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeee-eECCCCceEEEeec
Q psy6859         191 NPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGL-SFSPDGNKFVTISM  259 (261)
Q Consensus       191 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~  259 (261)
                      +|||+++++++.||.++||.++.              .++ ...+..|...+..+ .|+|+|+.|+..+.
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~--------------~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~  399 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDS--------------KGK-AAALTHGNWSVDELLAVDEKAGLAYFRAG  399 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECS--------------SSC-EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred             CCCCeEEEEecCCCccEEEEEcC--------------CCC-eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence            99999989999999888887642              133 66677777888887 59999998765443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=1.1e-22  Score=155.62  Aligned_cols=223  Identities=10%  Similarity=-0.008  Sum_probs=159.2

Q ss_pred             EEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccc-cceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeee
Q psy6859           8 HVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL-GVIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      .+++++ +.++++++.++.|.+||..++  +.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCC--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            456777 778899999999999999887  6666666443 2578999999998665 5557899999999998887776


Q ss_pred             eccCc------ceeEEEEeecCCceeeeeeecCC------------CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeC
Q psy6859          85 KLDFT------PLTVECIHYLGDAIPTAAVSDQD------------SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLG  146 (261)
Q Consensus        85 ~~~~~------~~~~~~~~~~~~~~~~~~~s~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (261)
                      .....      ....+.++++++.++..    +.            ++.|.+||+.+++....+.....+..+.+++|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~----~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~  157 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYAT----VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  157 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEE----EEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             EcccccccccccccceEECCCCCEEEEE----cccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC
Confidence            64332      14567788888877765    32            4899999998854433222212333577889999


Q ss_pred             CCCceEEEEecCCCeEEEEEccCCCccceeeccCcc--------------------------------------------
Q psy6859         147 DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHT--------------------------------------------  182 (261)
Q Consensus       147 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------------------------------------------  182 (261)
                      ++. . ++ ++  +.|++||.. +++.+..+. .+.                                            
T Consensus       158 dg~-l-~~-~~--~~i~~~d~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  230 (349)
T 1jmx_B          158 DGS-L-YV-AG--PDIYKMDVK-TGKYTVALP-LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD  230 (349)
T ss_dssp             TSC-E-EE-ES--SSEEEECTT-TCCEEEEEC-STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred             CCc-E-EE-cc--CcEEEEeCC-CCceecccc-ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence            997 2 44 33  349999998 776665553 111                                            


Q ss_pred             ------------------------cCeEEEEEcC-CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         183 ------------------------KPVVLIKFNP-IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       183 ------------------------~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                                              ..+..++|+| ++++|+++  ++.|.+||+.+               ++.+..+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~---------------~~~~~~~~~  293 (349)
T 1jmx_B          231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ---------------RKLIKAANL  293 (349)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT---------------TEEEEEEEC
T ss_pred             cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc---------------CeEEEEEcC
Confidence                                    1345677889 99998888  88999999854               444444432


Q ss_pred             CccceeeeeECCCCceEEEeecCC
Q psy6859         238 NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                       ...+.+++|+|+|++|++++.++
T Consensus       294 -~~~~~~~~~s~dg~~l~~~~~~~  316 (349)
T 1jmx_B          294 -DHTYYCVAFDKKGDKLYLGGTFN  316 (349)
T ss_dssp             -SSCCCEEEECSSSSCEEEESBSS
T ss_pred             -CCCccceEECCCCCEEEEecCCC
Confidence             34577999999999988876553

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=1.8e-22  Score=168.81  Aligned_cols=239  Identities=9%  Similarity=-0.025  Sum_probs=161.4

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccce------------------eEEEEeeCCCEEE
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVI------------------HSICTNYNGTLLC   62 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~l~   62 (261)
                      |...+..++||| ++.|+.++. +.|++|++.++  +.......+...+                  .+++|+|||++|+
T Consensus       112 ~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g--~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la  188 (723)
T 1xfd_A          112 SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK--QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (723)
T ss_dssp             CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS--CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             ccccccccEECCCCCEEEEEEC-CeEEEEECCCC--ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE
Confidence            445588899999 889998886 79999999876  3444444333322                  7899999999999


Q ss_pred             EEeCCC----------------------------------cEEEEEccccceeeeeecc------CcceeEEEEeecCCc
Q psy6859          63 TVASDK----------------------------------AMKVFDVINFDMINMIKLD------FTPLTVECIHYLGDA  102 (261)
Q Consensus        63 s~~~dg----------------------------------~v~~wd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  102 (261)
                      +++.|+                                  .|++||+.+++....+..+      ........++++++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~  268 (723)
T 1xfd_A          189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV  268 (723)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred             EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence            987553                                  7999999888755555432      334566788898876


Q ss_pred             eeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceE----EEEEEeCCCCceEEEEecCCC------eEEEEEccCCCc
Q psy6859         103 IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTV----ECIHYLGDAIPTAAVSDQDSS------HVHIYDCKGNGT  172 (261)
Q Consensus       103 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~------~i~i~d~~~~~~  172 (261)
                      ++.....+..+..|.+||+.+++....+.... ...+    ..+.|+|++..+++++...++      .|.+||....+.
T Consensus       269 l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             EEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             EEEEEcCCCCeEEEEEEeCCCCcceEEEEecc-CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence            64442223345789999999988766554321 1122    367999999985555466677      577777321333


Q ss_pred             c--ceeeccCcccCeEE-EEEcCCCCEEEEEcC-C--CeEEEeecccccccCCeeeeeecccccceeecCC---Ccccee
Q psy6859         173 P--LHVLDRLHTKPVVL-IKFNPIYQVVVSVDK-A--GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK---NKTYPS  243 (261)
Q Consensus       173 ~--~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~  243 (261)
                      .  ...+. .+...+.. ++|+|+|+.|+..+. +  +.+++|++...             .......+..   |...+.
T Consensus       348 ~~~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~l~~~~~~~~~~~  413 (723)
T 1xfd_A          348 NDNIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV-------------GNFNRQCLSCDLVENCTYF  413 (723)
T ss_dssp             SCCCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS-------------TTCCCBCSSTTSSSSCCCC
T ss_pred             ccceeEee-cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC-------------CCCCcceecccccCCCCeE
Confidence            1  55554 34444554 699999998865554 4  78999998531             1112233332   567788


Q ss_pred             eeeECCCCceEEEee
Q psy6859         244 GLSFSPDGNKFVTIS  258 (261)
Q Consensus       244 ~~~~s~~~~~l~s~~  258 (261)
                      .++|+|||++|+...
T Consensus       414 ~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          414 SASFSHSMDFFLLKC  428 (723)
T ss_dssp             EEEECTTSSEEEEEC
T ss_pred             EEEECCCCCEEEEEc
Confidence            999999999888653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=6.8e-21  Score=146.62  Aligned_cols=236  Identities=11%  Similarity=0.128  Sum_probs=157.1

Q ss_pred             CCeEEEEEcC-CCeEEEecCC----CeEEEEeccC--CceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEc
Q psy6859           4 SPITHVVVTK-TDFVITASND----GHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDV   75 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d----~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~   75 (261)
                      .....++|+| +++|++++.+    +.|.+|+++.  +..+.+.....+......+++  ++++|++++ .++.+.+|++
T Consensus        50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPI  127 (361)
T ss_dssp             SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred             CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence            4566789999 8888888875    7999999876  333444455545556677777  777777776 5789999999


Q ss_pred             cccceeeeee----cc----------CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce------e------eE
Q psy6859          76 INFDMINMIK----LD----------FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM------I------NM  129 (261)
Q Consensus        76 ~~~~~~~~~~----~~----------~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~------~------~~  129 (261)
                      .....+..+.    ..          ......+.++++++.++..   ...++.|.+|++.....      +      ..
T Consensus       128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~---~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD---DLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE---ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE---eCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            7543332211    10          1112557888888866554   35688999999875432      1      12


Q ss_pred             EeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc--ceeec--cCcccCeEEEEEcCCCCEEEEEcC--C
Q psy6859         130 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP--LHVLD--RLHTKPVVLIKFNPIYQVVVSVDK--A  203 (261)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~--d  203 (261)
                      .... .......++|+|++.+ ++++...++.|.+||+. +++.  +..+.  ..+...+..++|+|||++|+++..  +
T Consensus       205 ~~~~-~~~~~~~~~~spdg~~-l~v~~~~~~~v~v~~~~-~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~  281 (361)
T 3scy_A          205 FKVA-PGSGPRHLIFNSDGKF-AYLINEIGGTVIAFRYA-DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA  281 (361)
T ss_dssp             EECC-TTCCEEEEEECTTSSE-EEEEETTTCEEEEEEEE-TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred             eecC-CCCCCeEEEEcCCCCE-EEEEcCCCCeEEEEEec-CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence            2222 2335678999999985 34555568999999998 6643  22232  133455789999999998866654  5


Q ss_pred             CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         204 GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       204 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      +.|.+|++....           ...+.+..+.. ...+..++|+|||++|++++.
T Consensus       282 ~~i~v~~~~~~~-----------g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          282 DGVAIFKVDETN-----------GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             CEEEEEEECTTT-----------CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEET
T ss_pred             CEEEEEEEcCCC-----------CcEEEeeEecC-CCCCceEEECCCCCEEEEEEC
Confidence            899999985210           01123333333 456789999999999988874

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=8.8e-22  Score=149.84  Aligned_cols=219  Identities=12%  Similarity=0.109  Sum_probs=156.5

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeecccc--ceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeeeeccC---
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLG--VIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMINMIKLDF---   88 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~~~~~~~---   88 (261)
                      +++++++.++.|.+||..+.  +.+..+.....  .+..++|+|++++++ ++..++.|.+||+.+++.+..+....   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCC--cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence            47899999999999999887  66666653221  578999999997664 55567899999999998887766432   


Q ss_pred             --cceeEEEEeecCCceeeeeeec----C----CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          89 --TPLTVECIHYLGDAIPTAAVSD----Q----DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        89 --~~~~~~~~~~~~~~~~~~~~s~----~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                        .....+.++++++.++......    .    .++.|.+||+.+++.+..+....   .+..+.|+|++.+  ++++  
T Consensus        80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~--l~~~--  152 (337)
T 1pby_B           80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSK--LYGL--  152 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSC--EEEE--
T ss_pred             ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCE--EEEe--
Confidence              1234567788887776651100    0    47999999999988777776532   4567889999986  3333  


Q ss_pred             CCeEEEEEccCCCccceeecc-----------------------------------------------------------
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDR-----------------------------------------------------------  179 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~-----------------------------------------------------------  179 (261)
                      ++.|++||+. +++.+..+..                                                           
T Consensus       153 ~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  231 (337)
T 1pby_B          153 GRDLHVMDPE-AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             SSSEEEEETT-TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             CCeEEEEECC-CCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence            5789999987 6555433320                                                           


Q ss_pred             ------CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCce
Q psy6859         180 ------LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNK  253 (261)
Q Consensus       180 ------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  253 (261)
                            .+...+.+++|+|++++|+++  ++.|.+||+.+               ++.+..+.. ...+.+++|+|+|++
T Consensus       232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~---------------~~~~~~~~~-~~~~~~~~~s~dg~~  293 (337)
T 1pby_B          232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK---------------NASIKRVPL-PHSYYSVNVSTDGST  293 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT---------------TEEEEEEEC-SSCCCEEEECTTSCE
T ss_pred             eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC---------------CcCcceecC-CCceeeEEECCCCCE
Confidence                  011234568999999988887  68999999854               444444432 346789999999999


Q ss_pred             EEEeecCC
Q psy6859         254 FVTISMDR  261 (261)
Q Consensus       254 l~s~~~Dg  261 (261)
                      |++++.|+
T Consensus       294 l~~~~~~~  301 (337)
T 1pby_B          294 VWLGGALG  301 (337)
T ss_dssp             EEEESBSS
T ss_pred             EEEEcCCC
Confidence            98887654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=1.1e-22  Score=176.18  Aligned_cols=222  Identities=10%  Similarity=0.072  Sum_probs=169.7

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeec-----------cccceeEEEEe-eCCCEEEEEeCCCcEE
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRS-----------HLGVIHSICTN-YNGTLLCTVASDKAMK   71 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~s~~~dg~v~   71 (261)
                      .+..++|+| ++.|+.+ .++.|.+|+....  . +..+..           |...+..++|+ |||++|++++ ++.+.
T Consensus       246 ~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~--~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~  320 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE--K-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAF  320 (1045)
T ss_dssp             SSCEEEEEESSSCEEEE-ETTEEEEECTTTC--C-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEE
T ss_pred             CcceeeEcCCCCEEEEE-eCCEEEEecCCce--E-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEE
Confidence            456789999 8888877 4899999998543  2 224443           44579999999 9999999887 78999


Q ss_pred             EEEccccceeeeeeccCc-ceeEEEEeecCCceeeeeeecCCCCeEE-EEEcCCCceeeEEeecCCcceEEEEEEeCCCC
Q psy6859          72 VFDVINFDMINMIKLDFT-PLTVECIHYLGDAIPTAAVSDQDSSRVH-IYDCKGNDMINMIKLDFTPLTVECIHYLGDAI  149 (261)
Q Consensus        72 ~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (261)
                      +|++..++... +..+.. ......++ +++.++.+    +.+..+. +||+.+++... +.  .+...+..++|+|++.
T Consensus       321 ~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~----s~~~~l~~~~d~~~~~~~~-l~--~~~~~~~~~~~SpDG~  391 (1045)
T 1k32_A          321 IQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHG----TREGDFLGIYDYRTGKAEK-FE--ENLGNVFAMGVDRNGK  391 (1045)
T ss_dssp             EECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEE----ETTEEEEEEEETTTCCEEE-CC--CCCCSEEEEEECTTSS
T ss_pred             EEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEE----ECCCceEEEEECCCCCceE-ec--CCccceeeeEECCCCC
Confidence            99998776544 332333 44555566 66666655    4577888 89998776443 22  3445788999999998


Q ss_pred             ceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC----------eEEEeecccccccCC
Q psy6859         150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG----------ILEYWSGYKQEFKFP  219 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~  219 (261)
                      .  +++++.++.|++||+. +++....+. .|...+.+++|+|||++|++++.++          .|++||+.+      
T Consensus       392 ~--la~~~~~~~v~~~d~~-tg~~~~~~~-~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~------  461 (1045)
T 1k32_A          392 F--AVVANDRFEIMTVDLE-TGKPTVIER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG------  461 (1045)
T ss_dssp             E--EEEEETTSEEEEEETT-TCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT------
T ss_pred             E--EEEECCCCeEEEEECC-CCceEEecc-CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC------
Confidence            6  6777889999999998 887777776 7888899999999999998877644          899999853      


Q ss_pred             eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         220 KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                               ++ +..+..|...+..++|+|||++|++++.+
T Consensus       462 ---------g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~  492 (1045)
T 1k32_A          462 ---------RK-IFAATTENSHDYAPAFDADSKNLYYLSYR  492 (1045)
T ss_dssp             ---------TE-EEECSCSSSBEEEEEECTTSCEEEEEESC
T ss_pred             ---------Cc-EEEeeCCCcccCCceEcCCCCEEEEEecc
Confidence                     33 56677788888999999999999988764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=2e-21  Score=148.20  Aligned_cols=225  Identities=9%  Similarity=0.144  Sum_probs=149.0

Q ss_pred             eEEEecCCCeEEEEeccC-CceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-CcEEEEEcc--ccc--eeeeeeccCc
Q psy6859          16 FVITASNDGHIKFWKKQE-EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-KAMKVFDVI--NFD--MINMIKLDFT   89 (261)
Q Consensus        16 ~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~v~~wd~~--~~~--~~~~~~~~~~   89 (261)
                      .+++++.|+.|++|+++. +..+.+..+ .+...+.+++|+|++++|++++.+ +.|.+|++.  +++  .+..+.... 
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence            445558899999999963 222344444 367789999999999999888876 899999997  444  334444333 


Q ss_pred             ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCC---ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEE
Q psy6859          90 PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGN---DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYD  166 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  166 (261)
                      ....+.++++++.+++.   +..++.|.+||+..+   +.+..+..   ...+.+++|+|++..+ ++++..++.|++||
T Consensus        85 ~~~~~~~s~dg~~l~~~---~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l-~~~~~~~~~v~~~d  157 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVG---SYNAGNVSVTRLEDGLPVGVVDVVEG---LDGCHSANISPDNRTL-WVPALKQDRICLFT  157 (343)
T ss_dssp             CCSEEEECTTSSEEEEE---ETTTTEEEEEEEETTEEEEEEEEECC---CTTBCCCEECTTSSEE-EEEEGGGTEEEEEE
T ss_pred             CCcEEEEcCCCCEEEEE---ecCCCeEEEEECCCCccccccccccC---CCCceEEEECCCCCEE-EEecCCCCEEEEEE
Confidence            45667788888866554   245899999999533   33333332   2346789999999853 44444789999999


Q ss_pred             ccCC-Cccce----eeccCcccCeEEEEEcCCCCEEE-EEcCCCeEEEeecccccccCCeeeeeecccccceeecCC---
Q psy6859         167 CKGN-GTPLH----VLDRLHTKPVVLIKFNPIYQVVV-SVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK---  237 (261)
Q Consensus       167 ~~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---  237 (261)
                      +. . ++...    .+.......+..++|+|++++|+ ++..++.|.+|++.......        .....+..+..   
T Consensus       158 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~--------~~~~~~~~~~~~~~  228 (343)
T 1ri6_A          158 VS-DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI--------ECVQTLDMMPENFS  228 (343)
T ss_dssp             EC-TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC--------EEEEEEECSCTTCC
T ss_pred             ec-CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE--------EEEeeccccCcccc
Confidence            98 5 54332    22212345788999999999775 44588999999985311000        00011111111   


Q ss_pred             CccceeeeeECCCCceEEEee
Q psy6859         238 NKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      ....+..++|+|+|++|+++.
T Consensus       229 ~~~~~~~i~~s~dg~~l~v~~  249 (343)
T 1ri6_A          229 DTRWAADIHITPDGRHLYACD  249 (343)
T ss_dssp             SCCCEEEEEECTTSSEEEEEE
T ss_pred             ccCCccceEECCCCCEEEEEe
Confidence            134567899999999887544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=2.9e-22  Score=167.13  Aligned_cols=235  Identities=11%  Similarity=0.073  Sum_probs=161.4

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccC-----CceeeeEEeeccccc--------------eeEEEEeeCCCEE
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQE-----EGIEFVKHFRSHLGV--------------IHSICTNYNGTLL   61 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~-----~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~l   61 (261)
                      |...+.+++|+| ++.|+++ .|+.|++|++.+     +  +.......+...              +.++.|+|||++|
T Consensus       119 ~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g--~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~l  195 (706)
T 2z3z_A          119 TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS--RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCL  195 (706)
T ss_dssp             CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC--CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEE
T ss_pred             CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC--CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEE
Confidence            456678899999 8888885 679999999987     5  333333333332              4899999999999


Q ss_pred             EEEe---------------------------------CCCcEEEEEccccceeeeee--ccCcceeEEEEeecCCceeee
Q psy6859          62 CTVA---------------------------------SDKAMKVFDVINFDMINMIK--LDFTPLTVECIHYLGDAIPTA  106 (261)
Q Consensus        62 ~s~~---------------------------------~dg~v~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  106 (261)
                      ++++                                 .+..|++||+.+++......  .+........++++++.++..
T Consensus       196 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  275 (706)
T 2z3z_A          196 AFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVA  275 (706)
T ss_dssp             EEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEE
Confidence            9987                                 34679999998887554432  223445677888999877765


Q ss_pred             eeec-CCCCeEEEEEcCCCceeeEEeecCCcc---eEEEEEEeC--CCCceEEEEecCCCeEEEEEccCCCccceeeccC
Q psy6859         107 AVSD-QDSSRVHIYDCKGNDMINMIKLDFTPL---TVECIHYLG--DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL  180 (261)
Q Consensus       107 ~~s~-~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  180 (261)
                      .... .....|.+||+.+++....+.......   .+..+.|+|  ++..  ++++..++.+++|++...+..+..+. .
T Consensus       276 ~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~--l~~~~~~g~~~l~~~~~~~~~~~~l~-~  352 (706)
T 2z3z_A          276 EVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF--IWQSRRDGWNHLYLYDTTGRLIRQVT-K  352 (706)
T ss_dssp             EECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE--EEEECTTSSCEEEEEETTSCEEEECC-C
T ss_pred             EeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE--EEEEccCCccEEEEEECCCCEEEecC-C
Confidence            2110 112389999999984333332211111   235678999  8863  67778889999998864566677776 6


Q ss_pred             cccCeEE-EEEcCCCCEEEEE-cCCC----eEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceE
Q psy6859         181 HTKPVVL-IKFNPIYQVVVSV-DKAG----ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF  254 (261)
Q Consensus       181 ~~~~v~~-~~~~~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  254 (261)
                      +...+.. ++|+|+++.|+.+ ..++    .|..||+.+               ++ ...+. |...+.+++|||||++|
T Consensus       353 ~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~---------------~~-~~~l~-~~~~~~~~~~spdg~~l  415 (706)
T 2z3z_A          353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG---------------GK-TKDLT-PESGMHRTQLSPDGSAI  415 (706)
T ss_dssp             SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC---------------CC-CEESC-CSSSEEEEEECTTSSEE
T ss_pred             CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC---------------CC-ceecc-CCCceEEEEECCCCCEE
Confidence            7777877 7999999977554 4444    555556532               22 23333 56678999999999998


Q ss_pred             EEeec
Q psy6859         255 VTISM  259 (261)
Q Consensus       255 ~s~~~  259 (261)
                      +..+.
T Consensus       416 ~~~~~  420 (706)
T 2z3z_A          416 IDIFQ  420 (706)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            87643

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=8.2e-23  Score=170.75  Aligned_cols=220  Identities=8%  Similarity=0.048  Sum_probs=154.0

Q ss_pred             EEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecccc---ceeEEEEeeCCCEEEEEeC---------CCcEEEEE
Q psy6859           8 HVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLG---VIHSICTNYNGTLLCTVAS---------DKAMKVFD   74 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~---------dg~v~~wd   74 (261)
                      .++|+| ++ ++..+.|++|++|++.++  +....+.+|..   .+.+++|+|||++|++++.         ++.|++||
T Consensus        20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           20 FPNWISGQE-YLHQSADNNIVLYNIETG--QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCEESSSSE-EEEECTTSCEEEEESSSC--CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ccEECCCCe-EEEEcCCCCEEEEEcCCC--cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            678999 75 444556999999999987  55555555543   3899999999999998876         78999999


Q ss_pred             ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceE---------------
Q psy6859          75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTV---------------  139 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------------  139 (261)
                      +.+++.+...... .......++|+++.++.+     .++.|++||+.+++...... ......+               
T Consensus        97 ~~~g~~~~~~~l~-~~~~~~~~SPDG~~la~~-----~~~~i~~~~~~~g~~~~l~~-~~~~~~v~~g~~~~v~~ee~~~  169 (719)
T 1z68_A           97 LSNGEFVRGNELP-RPIQYLCWSPVGSKLAYV-----YQNNIYLKQRPGDPPFQITF-NGRENKIFNGIPDWVYEEEMLA  169 (719)
T ss_dssp             TTTTEECCSSCCC-SSBCCEEECSSTTCEEEE-----ETTEEEEESSTTSCCEECCC-CCBTTTEEESSCCHHHHHHTTC
T ss_pred             CCCCccccceecC-cccccceECCCCCEEEEE-----ECCeEEEEeCCCCCcEEEec-CCCcCCeEcccccceeeeeccc
Confidence            9988763211222 345678899999988776     47899999998886644321 1111111               


Q ss_pred             --EEEEEeCCCCceEEEEecCC----------------------------------CeEEEEEccCCCccc--------e
Q psy6859         140 --ECIHYLGDAIPTAAVSDQDS----------------------------------SHVHIYDCKGNGTPL--------H  175 (261)
Q Consensus       140 --~~~~~~~~~~~~~~~~~~~d----------------------------------~~i~i~d~~~~~~~~--------~  175 (261)
                        ..+.|+||+..  ++.++.|                                  ..|++||+. +++..        .
T Consensus       170 ~~~~~~wSPDG~~--la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~  246 (719)
T 1z68_A          170 TKYALWWSPNGKF--LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT-YPAYVGPQEVPVPA  246 (719)
T ss_dssp             SSCCEEECTTSSE--EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS-CHHHHCCEECCCCH
T ss_pred             CcccEEECCCCCE--EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC-CCCccceeEccCCc
Confidence              47999999987  4433322                                  178899997 66543        1


Q ss_pred             eeccCcccCeEEEEEcCCCCEEEEEcC--C--CeEEEee----cccccccCCeeeeeecccccceeec----CCCcccee
Q psy6859         176 VLDRLHTKPVVLIKFNPIYQVVVSVDK--A--GILEYWS----GYKQEFKFPKCVHFESKLDTDLFEF----AKNKTYPS  243 (261)
Q Consensus       176 ~~~~~~~~~v~~~~~~~~~~~l~~~~~--d--g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~  243 (261)
                      .+. .|...+..++|+||++++++...  +  ..|.+||    +.+               +++...+    .+|...+.
T Consensus       247 ~~~-~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~---------------g~~~~~~~~~~~~~~~~~~  310 (719)
T 1z68_A          247 MIA-SSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT---------------WDCPKTQEHIEESRTGWAG  310 (719)
T ss_dssp             HHH-TSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS---------------EECCGGGEEEEECSSSCSS
T ss_pred             cCC-CCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC---------------CceEEEEecccccCCceEc
Confidence            233 57788999999999887776432  2  2477888    533               3333334    35667776


Q ss_pred             -----eeeECCCCceEEE
Q psy6859         244 -----GLSFSPDGNKFVT  256 (261)
Q Consensus       244 -----~~~~s~~~~~l~s  256 (261)
                           .+.|+|||+.|+.
T Consensus       311 ~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          311 GFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             SSSCCCCEECTTSSCEEE
T ss_pred             cccCCccEECCCCCeEEE
Confidence                 8999999997665

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=2.2e-22  Score=158.15  Aligned_cols=190  Identities=8%  Similarity=0.009  Sum_probs=138.5

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEEccccce----------ee------eeeccCcceeEEEEeecCCceeeeeeec
Q psy6859          47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM----------IN------MIKLDFTPLTVECIHYLGDAIPTAAVSD  110 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~----------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~  110 (261)
                      ..++.+++++++.++++++.++ +++|+......          +.      .+. ....+..+.++++++.++.+..++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP-MKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEEC-CSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccccc-CCCcccEEEEcCCCCEEEEEEecc
Confidence            4578999999999999999887 89988642111          10      111 123477788888888776432256


Q ss_pred             CCCCeEEEEEcCCC--------ceeeEEe-ecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCc
Q psy6859         111 QDSSRVHIYDCKGN--------DMINMIK-LDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLH  181 (261)
Q Consensus       111 ~~d~~i~i~d~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  181 (261)
                      +.|+.|++||+++.        +.+..+. ...+...+.+++|+|+... ++++++.|++|++||++ ++..+.... .|
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~-~las~s~Dg~v~iwD~~-~~~~~~~~~-~~  191 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS-MVAVCLADGSIAVLQVT-ETVKVCATL-PS  191 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT-EEEEEETTSCEEEEEES-SSEEEEEEE-CG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC-EEEEEECCCeEEEEEcC-CCcceeecc-CC
Confidence            89999999998754        2222222 2235668999999998432 38888999999999999 666555554 78


Q ss_pred             ccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC-------CCccceeeeeECCCCceE
Q psy6859         182 TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA-------KNKTYPSGLSFSPDGNKF  254 (261)
Q Consensus       182 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l  254 (261)
                      ...|++++|+|+|++|++|+.||.|++||++.                +....+.       .|...|.+++|++++.++
T Consensus       192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~----------------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL----------------QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             GGCEEEEEECTTSSCEEEEETTSCEEEECTTC----------------CEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred             CCceeEEEEcCCCCEEEEEcCCCcEEEEccCC----------------cccccccCCcccCCCCceeEEEEEEecCceEE
Confidence            99999999999999999999999999999851                1111121       244589999999998887


Q ss_pred             EEe
Q psy6859         255 VTI  257 (261)
Q Consensus       255 ~s~  257 (261)
                      ++.
T Consensus       256 ~~~  258 (434)
T 2oit_A          256 IVY  258 (434)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=1.1e-21  Score=169.81  Aligned_cols=227  Identities=11%  Similarity=0.051  Sum_probs=171.8

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      +|...+.++.|+++.++++++.|+.+.||.++..+ .....+..|. .+...+|+|||++|+.+ .++.|.+||+... .
T Consensus       201 ~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g-~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~  276 (1045)
T 1k32_A          201 DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDG-KDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-K  276 (1045)
T ss_dssp             CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTS-CSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-C
T ss_pred             CCCCcccceEEeCCEEEEEEeccCceEEEEEeCCC-CcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-E
Confidence            58889999999988677788889999999876422 2334555554 46778999999998887 5889999998443 3


Q ss_pred             eeeeecc-----------CcceeEEEEe-ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc-eEEEEEEeCC
Q psy6859          81 INMIKLD-----------FTPLTVECIH-YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL-TVECIHYLGD  147 (261)
Q Consensus        81 ~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~  147 (261)
                      +..+..+           ........++ ++++.++..    + ++.+.+|++.+++... +  ..++. .+..+.|+ +
T Consensus       277 l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~----~-~~~i~~~~~~~~~~~~-~--~~~~~~~~~~~~~s-d  347 (1045)
T 1k32_A          277 IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFV----S-RGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGD-T  347 (1045)
T ss_dssp             EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEE----E-TTEEEEECTTSSBEEE-C--SCCSCEEEEEECSS-S
T ss_pred             eeeeccCcccccccccccccccceeeecCCCCCEEEEE----E-cCEEEEEcCCCCceEE-c--cCCCcceEEeeeEc-C
Confidence            3333321           1245678888 999888776    2 8899999998876443 2  22344 78899999 8


Q ss_pred             CCceEEEEecCCCeEE-EEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeec
Q psy6859         148 AIPTAAVSDQDSSHVH-IYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFES  226 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  226 (261)
                      +..  ++.++.++.+. +||+. .++ ...+. .|...+..++|+|||++|++++.++.|++||+.+             
T Consensus       348 g~~--l~~~s~~~~l~~~~d~~-~~~-~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-------------  409 (1045)
T 1k32_A          348 KVA--FIHGTREGDFLGIYDYR-TGK-AEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-------------  409 (1045)
T ss_dssp             EEE--EEEEETTEEEEEEEETT-TCC-EEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-------------
T ss_pred             CCe--EEEEECCCceEEEEECC-CCC-ceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCC-------------
Confidence            865  55555577888 89987 544 34554 6778899999999999999999999999999954             


Q ss_pred             ccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         227 KLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       227 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                        ++......+|...+.+++|||||++|++++.+
T Consensus       410 --g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          410 --GKPTVIERSREAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             --CCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             --CceEEeccCCCCCccceEECCCCCeEEEEecC
Confidence              45555555788899999999999999988753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=3.1e-20  Score=143.18  Aligned_cols=236  Identities=8%  Similarity=-0.035  Sum_probs=155.2

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEecc-CCceeeeEEeec-cccceeEEEEeeCCCE--EEEEe-------------
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQ-EEGIEFVKHFRS-HLGVIHSICTNYNGTL--LCTVA-------------   65 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~s~~-------------   65 (261)
                      ..+..++|+| +++|++++.+ .|.+|++. ++  +....... ..+.+..++|+|++++  +++++             
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g--~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT--EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT--EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCC--CEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            3577899999 8888888887 99999997 55  33322221 1133567899999984  45553             


Q ss_pred             CCCcEEEEEcc-ccceeeeeec----cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC-CCceee--EEeecCCcc
Q psy6859          66 SDKAMKVFDVI-NFDMINMIKL----DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK-GNDMIN--MIKLDFTPL  137 (261)
Q Consensus        66 ~dg~v~~wd~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~--~~~~~~~~~  137 (261)
                      .++.+.+|++. +++....+..    .......+.++++++.+++.   ...++.|.+||+. +++...  .+....+..
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~---~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA---DLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE---ETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE---cCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence            68999999997 4655444332    23345677888998876543   2356899999998 665432  222211234


Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccC-CCccc---e---eecc---Cccc------CeEEEE-EcCCCCEEEEE
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG-NGTPL---H---VLDR---LHTK------PVVLIK-FNPIYQVVVSV  200 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~---~---~~~~---~~~~------~v~~~~-~~~~~~~l~~~  200 (261)
                      .+..++|+|++.++ +++...++.|.+|++.. +++..   .   .+..   ++..      .+..++ |+|||++|+++
T Consensus       194 ~p~~~~~spdg~~l-~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~  272 (365)
T 1jof_A          194 HPRWVAMHPTGNYL-YALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CEEEEEECTTSSEE-EEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CCCEeEECCCCCEE-EEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence            57899999999863 44445578999998752 34332   1   2210   1121      488999 99999988776


Q ss_pred             cCC-C-----eEEEeecccccccCCeeeeeeccccccee---ecCCCccceeeeeECC---CCceEEEeecC
Q psy6859         201 DKA-G-----ILEYWSGYKQEFKFPKCVHFESKLDTDLF---EFAKNKTYPSGLSFSP---DGNKFVTISMD  260 (261)
Q Consensus       201 ~~d-g-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~---~~~~l~s~~~D  260 (261)
                      ..+ .     .|.+|++..              +++...   ....+...+..++|+|   ||++|++++.+
T Consensus       273 ~~~~~~~~~~~i~v~~~~~--------------~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          273 SRANKFELQGYIAGFKLRD--------------CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             EEESSTTSCCEEEEEEECT--------------TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             CCCCCCCCCCeEEEEEECC--------------CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence            533 2     899999852              122221   1223445677899999   89999998764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=1.3e-20  Score=143.31  Aligned_cols=192  Identities=9%  Similarity=0.030  Sum_probs=145.0

Q ss_pred             CeEEEEEcC-CCeEEEec------------CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEE
Q psy6859           5 PITHVVVTK-TDFVITAS------------NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMK   71 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~------------~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~   71 (261)
                      .+.+++|+| +++++++.            .++.|.+||+.+.  +....+.. ...+.+++|+|++++++++  ++.|.
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~  157 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL--SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLH  157 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT--EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC--cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence            577899999 87888875            5799999999876  56666653 4567899999999988887  68899


Q ss_pred             EEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC-----------------------eEEEEEcCCCceee
Q psy6859          72 VFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS-----------------------RVHIYDCKGNDMIN  128 (261)
Q Consensus        72 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~-----------------------~i~i~d~~~~~~~~  128 (261)
                      +||+.+++....+....... ...+++++..++..   +..++                       .|.+||+.+++.. 
T Consensus       158 ~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  232 (337)
T 1pby_B          158 VMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQ---HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-  232 (337)
T ss_dssp             EEETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCC---CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-
T ss_pred             EEECCCCcEeeeeeccccCC-CceeCCCccEEeee---ccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-
Confidence            99999998877766443111 12456676655433   12222                       5789999998765 


Q ss_pred             EEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEE
Q psy6859         129 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEY  208 (261)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  208 (261)
                      .+........+..++|+|++.+  ++++  ++.|++||+. +++.+..+.  ....+.+++|+|++++|++++.++.|.+
T Consensus       233 ~~~~~~~~~~~~~~~~s~dg~~--l~~~--~~~v~~~d~~-~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v  305 (337)
T 1pby_B          233 MREVRIMDVFYFSTAVNPAKTR--AFGA--YNVLESFDLE-KNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAA  305 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSE--EEEE--ESEEEEEETT-TTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEE
T ss_pred             EeecCCCCCceeeEEECCCCCE--EEEe--CCeEEEEECC-CCcCcceec--CCCceeeEEECCCCCEEEEEcCCCcEEE
Confidence            4444334456788999999986  4444  6899999998 888887775  3456789999999999988899999999


Q ss_pred             eeccc
Q psy6859         209 WSGYK  213 (261)
Q Consensus       209 wd~~~  213 (261)
                      ||+.+
T Consensus       306 ~d~~~  310 (337)
T 1pby_B          306 YDAET  310 (337)
T ss_dssp             EETTT
T ss_pred             EECcC
Confidence            99954

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=4.1e-19  Score=135.93  Aligned_cols=206  Identities=13%  Similarity=0.115  Sum_probs=140.3

Q ss_pred             CCCCeEEEEEcC-CCeEEEec-CCCeEEEEeccC-CceeeeEEeec---------cccceeEEEEeeCCCEEEEEeCCCc
Q psy6859           2 HRSPITHVVVTK-TDFVITAS-NDGHIKFWKKQE-EGIEFVKHFRS---------HLGVIHSICTNYNGTLLCTVASDKA   69 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~-~d~~i~iw~~~~-~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~s~~~dg~   69 (261)
                      |...+..++|+| +++|++++ .++.|.+|++.. +....+..+..         +...+.+++|+|+++++++...++.
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~  163 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDK  163 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTE
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCE
Confidence            345678899999 88777776 789999999963 32234444332         1124788999999996666667889


Q ss_pred             EEEEEcc-ccceeee--eecc-CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC--CceeeEEeecCCc------c
Q psy6859          70 MKVFDVI-NFDMINM--IKLD-FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG--NDMINMIKLDFTP------L  137 (261)
Q Consensus        70 v~~wd~~-~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--~~~~~~~~~~~~~------~  137 (261)
                      |.+|++. +++....  +... ......+.++++++.++..   ...++.+.+|++..  ++..........+      .
T Consensus       164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~---~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  240 (347)
T 3hfq_A          164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA---GELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN  240 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE---ETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred             EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE---eCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence            9999998 4543322  2221 2234457888888865543   36789999999874  4432221211111      3


Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC--ccceeeccCcccCeEEEEEcCCCCEEEEEcC-CCeEEEeecc
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG--TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK-AGILEYWSGY  212 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~  212 (261)
                      .+..++|+|++.+ ++++...++.|.+||+...+  +.+..+. .+...+..++|+|+|++|++++. ++.|.+|+++
T Consensus       241 ~~~~i~~spdG~~-l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          241 GAAAIRLSHDGHF-LYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEEECTTSCE-EEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceeEEECCCCCE-EEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            5789999999986 34666678999999996232  3344454 45567889999999998877764 5899999653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=2.5e-20  Score=156.16  Aligned_cols=235  Identities=7%  Similarity=0.023  Sum_probs=156.0

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccc-----eeEEEEeeCCCEEEEEeCC---------C
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGV-----IHSICTNYNGTLLCTVASD---------K   68 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~~d---------g   68 (261)
                      ....+++|+| +++++++  |++|++|++.++  +....+.+|...     ...+.|+|||++|+.++.+         +
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCC--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            4466899999 7777776  899999999987  455556666533     2347899999999998876         5


Q ss_pred             cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceE---------
Q psy6859          69 AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTV---------  139 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------  139 (261)
                      .+.+||+.+++... +..+........++|+|+.++.+     .++.|.+||+.+++..+ +........+         
T Consensus        93 ~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~-----~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           93 SYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV-----WNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             EEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE-----ETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHH
T ss_pred             EEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE-----ECCeEEEEECCCCceEE-EcCCCCccceecCcccccc
Confidence            66799999887654 33334457788899999988765     57899999998876443 2222121111         


Q ss_pred             --------EEEEEeCCCCceEEEEecC----------------------------------CCeEEEEEccCC---Cc--
Q psy6859         140 --------ECIHYLGDAIPTAAVSDQD----------------------------------SSHVHIYDCKGN---GT--  172 (261)
Q Consensus       140 --------~~~~~~~~~~~~~~~~~~~----------------------------------d~~i~i~d~~~~---~~--  172 (261)
                              ..+.|+||+..+++.+...                                  ...|++||+. +   ++  
T Consensus       166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~-~~~~~~~~  244 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD-SLSSVTNA  244 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETT-SCCSSSCC
T ss_pred             cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECC-CCCCCCcc
Confidence                    3488999998744332110                                  1158889987 5   52  


Q ss_pred             cceeecc-----CcccCeEEEEEcCCCCEEEEEc----CCCeEEEeecccccccCCeeeeeecccccceeec--CCCccc
Q psy6859         173 PLHVLDR-----LHTKPVVLIKFNPIYQVVVSVD----KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF--AKNKTY  241 (261)
Q Consensus       173 ~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  241 (261)
                      ....+..     .+...+..++|+|||+.++...    .+..|.+||+.+++...         ....+..+  ..|...
T Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~---------~~~~~~~l~~~~~~~~  315 (740)
T 4a5s_A          245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW---------NCLVARQHIEMSTTGW  315 (740)
T ss_dssp             CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE---------EECGGGCEEEECSSSC
T ss_pred             eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccc---------ceeEEEEeeeccCCce
Confidence            2233331     2677899999999999665543    23479999986531000         00011112  345555


Q ss_pred             ee-----eeeECCCCceEE-Eeec
Q psy6859         242 PS-----GLSFSPDGNKFV-TISM  259 (261)
Q Consensus       242 v~-----~~~~s~~~~~l~-s~~~  259 (261)
                      |.     .++|+|||+.|+ ..+.
T Consensus       316 v~~~~~~~p~fspDG~~l~~~~s~  339 (740)
T 4a5s_A          316 VGRFRPSEPHFTLDGNSFYKIISN  339 (740)
T ss_dssp             SSSSSCCCCEECTTSSEEEEEEEC
T ss_pred             EccCcCCCceEcCCCCEEEEEEEc
Confidence            54     789999999887 6653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=7.6e-19  Score=136.36  Aligned_cols=199  Identities=9%  Similarity=0.017  Sum_probs=135.0

Q ss_pred             EEEcC-CCeEEEecC-CC--eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859           9 VVVTK-TDFVITASN-DG--HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         9 ~~~~~-~~~l~s~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      .+|+| +++|+.++. ++  .|.+||+.++  +......++...+..+.|+||++.|+.++.++.|++||+.+++....+
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~  118 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY  118 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee
Confidence            78999 888888877 67  4777888776  555555666666667889999999999999999999999998876665


Q ss_pred             eccCcceeE--EEEeecCCceeeeee------------------ecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEE
Q psy6859          85 KLDFTPLTV--ECIHYLGDAIPTAAV------------------SDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHY  144 (261)
Q Consensus        85 ~~~~~~~~~--~~~~~~~~~~~~~~~------------------s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  144 (261)
                      ..+......  ..+++++..++....                  ....+..|.+||+.+++.......   ...+..+.|
T Consensus       119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~~~~~~~~  195 (388)
T 3pe7_A          119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE---NQWLGHPIY  195 (388)
T ss_dssp             ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEE
T ss_pred             echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC---CccccccEE
Confidence            544432221  223566665543211                  124567899999999875544432   335788999


Q ss_pred             eC-CCCceEEEEecC----CCeEEEEEccCCCccceeeccCcc--cCeEEEEEcCCCCEEEEEc-CCC----eEEEeecc
Q psy6859         145 LG-DAIPTAAVSDQD----SSHVHIYDCKGNGTPLHVLDRLHT--KPVVLIKFNPIYQVVVSVD-KAG----ILEYWSGY  212 (261)
Q Consensus       145 ~~-~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-~dg----~i~iwd~~  212 (261)
                      +| ++..++++....    ...|.++|.. .+ ....+. .+.  ..+..+.|+|||+.|+..+ .++    .|.+||+.
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~-~~~~l~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (388)
T 3pe7_A          196 RPYDDSTVAFCHEGPHDLVDARMWLINED-GT-NMRKVK-THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE  272 (388)
T ss_dssp             ETTEEEEEEEEECSCTTTSSCSEEEEETT-SC-CCEESC-CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT
T ss_pred             CCCCCCEEEEEEecCCCCCcceEEEEeCC-CC-ceEEee-eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC
Confidence            99 887643333221    3368888875 43 344443 333  3578899999999775543 222    39999987


Q ss_pred             ccc
Q psy6859         213 KQE  215 (261)
Q Consensus       213 ~~~  215 (261)
                      +++
T Consensus       273 ~g~  275 (388)
T 3pe7_A          273 TLE  275 (388)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=2.5e-18  Score=132.25  Aligned_cols=228  Identities=12%  Similarity=0.080  Sum_probs=143.8

Q ss_pred             CeEEEe----cCCCeEEEEeccC--CceeeeEEeeccccceeEEEEeeCCCEEEEEeCC----CcEEEEEccc--ccee-
Q psy6859          15 DFVITA----SNDGHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD----KAMKVFDVIN--FDMI-   81 (261)
Q Consensus        15 ~~l~s~----~~d~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~~wd~~~--~~~~-   81 (261)
                      .+++.|    +.++.|.+|.++.  +..+.+..+  +...+..++|+|++++|++++.+    +.+.+|++..  ++.. 
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~   91 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL   91 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence            355555    3567899998754  333334334  66778899999999999998876    7999999875  4332 


Q ss_pred             -eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE----eecC--------CcceEEEEEEeCCC
Q psy6859          82 -NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI----KLDF--------TPLTVECIHYLGDA  148 (261)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~----~~~~--------~~~~~~~~~~~~~~  148 (261)
                       .........  ...+..+++.+++.   ...++.+.+|++.....+..+    ....        ....+.+++|+|++
T Consensus        92 ~~~~~~~~~~--p~~~~~dg~~l~~~---~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg  166 (361)
T 3scy_A           92 LNTQKTMGAD--PCYLTTNGKNIVTA---NYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG  166 (361)
T ss_dssp             EEEEECSSSC--EEEEEECSSEEEEE---ETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred             eeEeccCCCC--cEEEEECCCEEEEE---ECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence             222222222  22222366655543   356899999999754332211    1110        11235789999999


Q ss_pred             CceEEEEecCCCeEEEEEccCCCc------cc-----eeeccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccc
Q psy6859         149 IPTAAVSDQDSSHVHIYDCKGNGT------PL-----HVLDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEF  216 (261)
Q Consensus       149 ~~~~~~~~~~d~~i~i~d~~~~~~------~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~  216 (261)
                      .+ +++++..++.|.+|++.....      +.     ..+.......+..++|+|+|++|++++ .++.|.+|++.++..
T Consensus       167 ~~-l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~  245 (361)
T 3scy_A          167 KY-LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML  245 (361)
T ss_dssp             SE-EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred             CE-EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence            85 355666689999999872221      11     112113456678999999999887666 689999999864311


Q ss_pred             cCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         217 KFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                                .....+.....+...+..++|+|||++|+++..+
T Consensus       246 ----------~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          246 ----------DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             ----------EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred             ----------EEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence                      0011122223344556899999999998776543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=4.9e-18  Score=126.47  Aligned_cols=230  Identities=13%  Similarity=0.174  Sum_probs=160.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee------ccccceeEEEEe-eCCCEEEEEeC-CCcEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR------SHLGVIHSICTN-YNGTLLCTVAS-DKAMK   71 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~s~~~-dg~v~   71 (261)
                      ||-....++++++ ++++++...++.|.+|+.+.   +....+.      ++...+..+++. ++++++++... ++.|.
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC---cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            4556789999999 88888888899999999874   3344443      234567899994 67766666533 78999


Q ss_pred             EEEccccceeeeeecc-CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCc
Q psy6859          72 VFDVINFDMINMIKLD-FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIP  150 (261)
Q Consensus        72 ~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (261)
                      +|| .+++.+..+... ......+.+.++++.+++.    ..++.|.+||.. ++.+..+........+..+++++++. 
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~-  176 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVE----CKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-  176 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEE----TTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEE----CCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC-
Confidence            999 567776665432 2234556677777644433    568899999965 44555554322334578999999986 


Q ss_pred             eEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCCCEEEEEcCCC-eEEEeecccccccCCeeeeeeccc
Q psy6859         151 TAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAG-ILEYWSGYKQEFKFPKCVHFESKL  228 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~  228 (261)
                       ++++...++.|++||..  ++.+..+. .++...+..++++|+|+++++...++ .|.+||..                
T Consensus       177 -l~v~~~~~~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~----------------  237 (286)
T 1q7f_A          177 -IFISDNRAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD----------------  237 (286)
T ss_dssp             -EEEEEGGGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT----------------
T ss_pred             -EEEEECCCCEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC----------------
Confidence             47777778999999974  55666664 12235789999999999888887775 99999963                


Q ss_pred             ccceeecCCC--ccceeeeeECCCCceEEEeecC
Q psy6859         229 DTDLFEFAKN--KTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       229 ~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      ++.+..+..+  ...+.+++++|+|+++++ +.|
T Consensus       238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~  270 (286)
T 1q7f_A          238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKD  270 (286)
T ss_dssp             SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT
T ss_pred             CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC
Confidence            3333333332  234779999999987777 444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=2.7e-18  Score=130.46  Aligned_cols=233  Identities=11%  Similarity=0.108  Sum_probs=161.8

Q ss_pred             CCeEEEEEcC-CCeEEEecCC------------------------CeEEEEeccCCceeeeEEee-ccccceeEEEEeeC
Q psy6859           4 SPITHVVVTK-TDFVITASND------------------------GHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYN   57 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d------------------------~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~   57 (261)
                      +.+.+|+++| ++++++...+                        +.|.+||..++  +....+. ++-.....++++++
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--EILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--CEEEEECTTTCSSEEEEEECTT
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--eEEeccCCCccCCceEEEECCC
Confidence            5689999999 8888888777                        47999998876  4444443 34456889999999


Q ss_pred             CCEEEEEeCCCcEEEEEccccc-eeeeee---------ccCcceeEEEEee-cCCceeeeeeecC-CCCeEEEEEcCCCc
Q psy6859          58 GTLLCTVASDKAMKVFDVINFD-MINMIK---------LDFTPLTVECIHY-LGDAIPTAAVSDQ-DSSRVHIYDCKGND  125 (261)
Q Consensus        58 ~~~l~s~~~dg~v~~wd~~~~~-~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~s~~-~d~~i~i~d~~~~~  125 (261)
                      ++++++...++.|++||..... .+..+.         ........+.+.+ ++..+++-    + .++.|.+|| .+++
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d----~~~~~~I~~~~-~~g~  176 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD----GYCNSRIVQFS-PSGK  176 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE----CSSCCEEEEEC-TTSC
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe----CCCCCeEEEEc-CCCC
Confidence            9988888889999999975432 444442         1112344567776 44433332    4 589999999 4555


Q ss_pred             eeeEEeecCC--------cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcC----
Q psy6859         126 MINMIKLDFT--------PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNP----  192 (261)
Q Consensus       126 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~----  192 (261)
                      .+..+.....        -.....++++|++.. ++++...++.|++||.. +++.+..+. ..+...+..++|+|    
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~-l~v~d~~~~~I~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~pg~~~  254 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ-LCVADRENGRIQCFKTD-TKEFVREIKHASFGRNVFAISYIPGFLF  254 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTTTE-EEEEETTTTEEEEEETT-TCCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCCCE-EEEEECCCCEEEEEECC-CCcEEEEEeccccCCCcceeeecCCEEE
Confidence            6665542211        123689999998432 47788889999999997 788888774 14566788999999    


Q ss_pred             --CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec---CCCccceeeeeECCCCceEEEeecC
Q psy6859         193 --IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF---AKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       193 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                        +++..++...+..|++||+.+               ++.+..+   .++...+.+++++|+|.++++...+
T Consensus       255 ~~~g~~~v~~~~~~~v~~~~~~~---------------g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~  312 (329)
T 3fvz_A          255 AVNGKPYFGDQEPVQGFVMNFSS---------------GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT  312 (329)
T ss_dssp             EEECCCCTTCSCCCCEEEEETTT---------------CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred             EeCCCEEeccCCCcEEEEEEcCC---------------CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence              333223333455899999854               5555555   3566778999999999777776554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=6.4e-19  Score=134.71  Aligned_cols=192  Identities=9%  Similarity=-0.031  Sum_probs=139.3

Q ss_pred             CeEEEEEcC-CCe-EEEecCCCeEEEEeccCCceeeeEEeecc------ccceeEEEEeeCCCEEEEEeCC---------
Q psy6859           5 PITHVVVTK-TDF-VITASNDGHIKFWKKQEEGIEFVKHFRSH------LGVIHSICTNYNGTLLCTVASD---------   67 (261)
Q Consensus         5 ~v~~~~~~~-~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~d---------   67 (261)
                      .+..++|+| +++ ++++..++.|.+||+.+.  +....+..+      ...+..++|+|+++++++++.+         
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  121 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV  121 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence            567899999 764 456678899999999876  555555422      2337899999999999998865         


Q ss_pred             ---CcEEEEEccccceee---eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC-------
Q psy6859          68 ---KAMKVFDVINFDMIN---MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF-------  134 (261)
Q Consensus        68 ---g~v~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~-------  134 (261)
                         +.|.+||+.+++...   .+..+. ....+.++++++ ++..    +  +.|.+||+.+++.+..+....       
T Consensus       122 ~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~-l~~~----~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~  193 (349)
T 1jmx_B          122 VKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLMRAADDGS-LYVA----G--PDIYKMDVKTGKYTVALPLRNWNRKGYS  193 (349)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEECCS-SCCCEEECTTSC-EEEE----S--SSEEEECTTTCCEEEEECSTTCCCTTBC
T ss_pred             cCCCeEEEEECCCccccceeeeccCCC-cccceeECCCCc-EEEc----c--CcEEEEeCCCCceeccccccccCCcccc
Confidence               899999998865433   333332 345566888887 5443    3  349999999887766654321       


Q ss_pred             ------------------C-----------------------------------------cceEEEEEEeC-CCCceEEE
Q psy6859         135 ------------------T-----------------------------------------PLTVECIHYLG-DAIPTAAV  154 (261)
Q Consensus       135 ------------------~-----------------------------------------~~~~~~~~~~~-~~~~~~~~  154 (261)
                                        .                                         ...+..+.++| ++..  ++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~--l~  271 (349)
T 1jmx_B          194 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ--IY  271 (349)
T ss_dssp             CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE--EE
T ss_pred             CccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE--EE
Confidence                              0                                         00234566778 8875  34


Q ss_pred             EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ++  ++.|.+||+. +++.+..+.  ....+.+++|+|++++|++++.++.|.+||+.+
T Consensus       272 ~~--~~~v~~~d~~-~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          272 GV--LNRLAKYDLK-QRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             EE--ESEEEEEETT-TTEEEEEEE--CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             EE--cCeEEEEECc-cCeEEEEEc--CCCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence            43  7899999998 888877775  344578999999999888888899999999854

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=1.1e-19  Score=148.35  Aligned_cols=222  Identities=9%  Similarity=0.044  Sum_probs=153.3

Q ss_pred             CCeEEEEEcCCCeEEEecC---CCeEEEEeccC--CceeeeEEeeccccceeEEEEeeCCCE-EEEEeCCCcEEEEEccc
Q psy6859           4 SPITHVVVTKTDFVITASN---DGHIKFWKKQE--EGIEFVKHFRSHLGVIHSICTNYNGTL-LCTVASDKAMKVFDVIN   77 (261)
Q Consensus         4 ~~v~~~~~~~~~~l~s~~~---d~~i~iw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~v~~wd~~~   77 (261)
                      ..|..++|+|++++++++.   +....+|.++.  .+...  .+... ..+...+|+|+++. +++.+.++.+.+||+.+
T Consensus        65 ~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~  141 (582)
T 3o4h_A           65 NSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDG  141 (582)
T ss_dssp             SEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE--ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred             cccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc--cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccC
Confidence            5789999999866666654   45566765543  22122  33222 23346688888753 33334444556999988


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ++.......+.   ....++|+|+.++......+..+.|.+||+.+++.. .+.  .+...+..++|+||+..  ++++.
T Consensus       142 g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~--~~~~~~~~~~~SpDG~~--l~~~~  213 (582)
T 3o4h_A          142 GGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD--SGEGSFSSASISPGMKV--TAGLE  213 (582)
T ss_dssp             TEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC--CSSCEEEEEEECTTSCE--EEEEE
T ss_pred             CcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee--cCCCccccceECCCCCE--EEEcc
Confidence            87655444332   567789999988866322222378999999988754 333  34557899999999986  45667


Q ss_pred             CCC--eEEEEEccCCCccceeeccCcccCeEEEE--------EcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecc
Q psy6859         158 DSS--HVHIYDCKGNGTPLHVLDRLHTKPVVLIK--------FNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESK  227 (261)
Q Consensus       158 ~d~--~i~i~d~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  227 (261)
                      .++  .|++||+. +++.. .+. .+...+..+.        |+|||.++++++.|+.+++|++  +             
T Consensus       214 ~~~~~~i~~~d~~-~~~~~-~~~-~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-------------  275 (582)
T 3o4h_A          214 TAREARLVTVDPR-DGSVE-DLE-LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G-------------  275 (582)
T ss_dssp             CSSCEEEEEECTT-TCCEE-ECC-CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-------------
T ss_pred             CCCeeEEEEEcCC-CCcEE-Ecc-CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-------------
Confidence            788  89999998 77666 565 6666666666        9999988899999999999997  2             


Q ss_pred             cccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         228 LDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       228 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                        +.+.   ...+.+.+++|+ +++++++++.+
T Consensus       276 --~~~~---~~~~~v~~~~~s-dg~~l~~~s~~  302 (582)
T 3o4h_A          276 --ERVE---APQGNHGRVVLW-RGKLVTSHTSL  302 (582)
T ss_dssp             --EEEC---CCSSEEEEEEEE-TTEEEEEEEET
T ss_pred             --Ceec---cCCCceEEEEec-CCEEEEEEcCC
Confidence              1111   233568899999 99999888765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.83  E-value=8.3e-17  Score=122.41  Aligned_cols=233  Identities=12%  Similarity=0.049  Sum_probs=152.9

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC----CcEEEEEcc
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD----KAMKVFDVI   76 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~~wd~~   76 (261)
                      |...+.+++|+| +++++++..++.|.+|+.+++  +.......+...+.+++++++++++++...+    +.|.+||..
T Consensus        43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~  120 (333)
T 2dg1_A           43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK--EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN  120 (333)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC--CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             cCccccCcEECCCCCEEEEECCCCEEEEEeCCCC--cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC
Confidence            345678999999 787778888999999999876  3333333456779999999999888877666    689999988


Q ss_pred             ccceeeeee--ccCcceeEEEEeecCCceeeeeeecCC------CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCC
Q psy6859          77 NFDMINMIK--LDFTPLTVECIHYLGDAIPTAAVSDQD------SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDA  148 (261)
Q Consensus        77 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (261)
                      +++....+.  ........+.+.+++...++.    ..      .+.|..+|..+++.......   ......++++|++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg  193 (333)
T 2dg1_A          121 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD----FRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDE  193 (333)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEE----CCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTS
T ss_pred             CCEEEEEEccCccCCcccceEECCCCCEEEEe----ccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCC
Confidence            766543322  122234455666766544332    22      35666667665544332221   1245789999998


Q ss_pred             CceEEEEecCCCeEEEEEccCCCccceee------ccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeee
Q psy6859         149 IPTAAVSDQDSSHVHIYDCKGNGTPLHVL------DRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCV  222 (261)
Q Consensus       149 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  222 (261)
                      .. ++++...++.|.+||+...+..+..+      .......+..++++++|+++++...++.|.+||..          
T Consensus       194 ~~-l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~----------  262 (333)
T 2dg1_A          194 KV-LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR----------  262 (333)
T ss_dssp             SE-EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT----------
T ss_pred             CE-EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC----------
Confidence            74 34555667899999996223333211      00111367889999999987777778899999973          


Q ss_pred             eeecccccceeecCCC------ccceeeeeECCCCceEEEeecC
Q psy6859         223 HFESKLDTDLFEFAKN------KTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       223 ~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                            ++.+..+..+      ...+.+++|+||++.|+.++.+
T Consensus       263 ------g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          263 ------GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             ------SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ------CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence                  2233333322      2268899999998777665543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=1.1e-17  Score=128.63  Aligned_cols=222  Identities=13%  Similarity=0.104  Sum_probs=144.7

Q ss_pred             EEEEcC-CCeEEEec----------CCCeEEEEeccCCceeeeEEeecc------ccceeEEEEeeCCCEEEEEeC--CC
Q psy6859           8 HVVVTK-TDFVITAS----------NDGHIKFWKKQEEGIEFVKHFRSH------LGVIHSICTNYNGTLLCTVAS--DK   68 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~--dg   68 (261)
                      .++|+| +++++++.          .++.|.+||..+.  +.+..+...      ......++++|||++|+++..  ++
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~  131 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT  131 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence            789999 88887775          3678999999876  555555432      235678999999999998874  57


Q ss_pred             cEEEEEccccceeee-eeccCcc---------eeEEEEeecCCceeee--------------------------------
Q psy6859          69 AMKVFDVINFDMINM-IKLDFTP---------LTVECIHYLGDAIPTA--------------------------------  106 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~--------------------------------  106 (261)
                      .|.+||+.+++.+.. +......         .....+.+++..+...                                
T Consensus       132 ~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  211 (361)
T 2oiz_A          132 SIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK  211 (361)
T ss_dssp             EEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred             eEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence            999999999988776 5432210         0011111111100000                                


Q ss_pred             --eeecCCCCeEEEEEcCCCcee--eEEeecC--------CcceEEEEEEeCCCCceEEEEec----------CCCeEEE
Q psy6859         107 --AVSDQDSSRVHIYDCKGNDMI--NMIKLDF--------TPLTVECIHYLGDAIPTAAVSDQ----------DSSHVHI  164 (261)
Q Consensus       107 --~~s~~~d~~i~i~d~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~----------~d~~i~i  164 (261)
                        .+..+.++.+.++|+......  ..+....        .+.....++++|++... +++..          ..+.|.+
T Consensus       212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l-yv~~~~~~~~~~~~~~~~~v~v  290 (361)
T 2oiz_A          212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM-YVFMHPDGKEGTHKFPAAEIWV  290 (361)
T ss_dssp             SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE-EEEEESSCCTTCTTCCCSEEEE
T ss_pred             CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE-EEEEccCCCcccccCCCceEEE
Confidence              000123455666666543211  1111100        01111126788988764 33322          1358999


Q ss_pred             EEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccc--cceeecCCCccce
Q psy6859         165 YDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLD--TDLFEFAKNKTYP  242 (261)
Q Consensus       165 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v  242 (261)
                      ||+. +.+.+.++. .+.  +.+++|+|+|++|++++. +.|.+||..               ++  +.+..+..+....
T Consensus       291 iD~~-t~~~v~~i~-~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~---------------t~~l~~~~~i~~~G~~P  350 (361)
T 2oiz_A          291 MDTK-TKQRVARIP-GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS---------------QPEPKLLRTIEGAAEAS  350 (361)
T ss_dssp             EETT-TTEEEEEEE-CTT--CCEEEEETTTTEEEEECS-SCEEEEECS---------------SSSCEEEEEETTSCSSE
T ss_pred             EECC-CCcEEEEEe-cCC--eeEEEECCCCCEEEEeCC-CeEEEEECC---------------CCcceeeEEeccCCCCc
Confidence            9999 899999997 555  899999999999998887 999999984               46  7777776677788


Q ss_pred             eeeeECCCCc
Q psy6859         243 SGLSFSPDGN  252 (261)
Q Consensus       243 ~~~~~s~~~~  252 (261)
                      ..++++|+|+
T Consensus       351 ~~~~~~p~G~  360 (361)
T 2oiz_A          351 LQVQFHPVGG  360 (361)
T ss_dssp             EEEEECCCSC
T ss_pred             EEEEecCCCC
Confidence            9999999986

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.81  E-value=1.6e-16  Score=118.85  Aligned_cols=228  Identities=11%  Similarity=0.062  Sum_probs=156.4

Q ss_pred             CCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           4 SPITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         4 ~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ....+++|+| ++ +++++..++.|..|+..+.    ...+..+...+.+++++++++++++...++.|.+||..+++..
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            4567899999 77 7888899999999998864    3455556678899999999998887777789999999777654


Q ss_pred             eeeecc----CcceeEEEEeecCCceeeeeeecC-------------CCCeEEEEEcCCCceeeEEeecCCcceEEEEEE
Q psy6859          82 NMIKLD----FTPLTVECIHYLGDAIPTAAVSDQ-------------DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHY  144 (261)
Q Consensus        82 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  144 (261)
                      ......    ......+.+.+++...++-...++             ..+.|..++.. ++. ..+..  .......+++
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~--~~~~~~gi~~  179 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIR--DRVKPNGLAF  179 (296)
T ss_dssp             EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEEC--CCSSEEEEEE
T ss_pred             EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeec--CCCCCccEEE
Confidence            332211    112234566777764443100011             13456666655 433 22222  2235578999


Q ss_pred             eCCCCceEEEEecCCCeEEEEEccCCCcc---ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCee
Q psy6859         145 LGDAIPTAAVSDQDSSHVHIYDCKGNGTP---LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKC  221 (261)
Q Consensus       145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  221 (261)
                      +|++..  +++.+.++.|.+||+..+++.   ...+. .+...+..++++++|++.++.  ++.|.+||..         
T Consensus       180 s~dg~~--lv~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~---------  245 (296)
T 3e5z_A          180 LPSGNL--LVSDTGDNATHRYCLNARGETEYQGVHFT-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD---------  245 (296)
T ss_dssp             CTTSCE--EEEETTTTEEEEEEECSSSCEEEEEEEEC-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT---------
T ss_pred             CCCCCE--EEEeCCCCeEEEEEECCCCcCcCCCeEee-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC---------
Confidence            999985  477777899999999633443   23332 455667789999999866665  7889999974         


Q ss_pred             eeeecccccceeecCCCccceeeeeE-CCCCceEEEeecCC
Q psy6859         222 VHFESKLDTDLFEFAKNKTYPSGLSF-SPDGNKFVTISMDR  261 (261)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~Dg  261 (261)
                             ++.+..+..+.. +.+++| +|+++.|++++.++
T Consensus       246 -------g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          246 -------GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             -------SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             -------CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence                   455566666666 899999 68999888887653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=1.9e-18  Score=134.42  Aligned_cols=228  Identities=9%  Similarity=0.003  Sum_probs=140.8

Q ss_pred             CeEEEEEcC-CCeEEEecCC---CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           5 PITHVVVTK-TDFVITASND---GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      .+..++|+| +++|+.....   ..|.+|++.++  +......++......+.|+||+++|+.++.++.|++||+.+++.
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCC--cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence            367788999 8887766432   46888888776  43333332322233488999999999999999999999988776


Q ss_pred             eeeeeccCcceeE-------------------EEEeecCCceeeeee-ecCCCCeEEEEEcCCCceeeEEeecCCcceEE
Q psy6859          81 INMIKLDFTPLTV-------------------ECIHYLGDAIPTAAV-SDQDSSRVHIYDCKGNDMINMIKLDFTPLTVE  140 (261)
Q Consensus        81 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~-s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  140 (261)
                      ......+......                   ..++++++.++.... ....+..|.+||+.+++......   ....+.
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~---~~~~~~  191 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ---DTAWLG  191 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE---ESSCEE
T ss_pred             EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc---CCcccc
Confidence            5544433221100                   012333433322100 01356789999999887655443   234678


Q ss_pred             EEEEeC-CCCceEEEEecCC----CeEEEEEccCCCccceeeccCc--ccCeEEEEEcCCCCEEEEEcCC-----CeEEE
Q psy6859         141 CIHYLG-DAIPTAAVSDQDS----SHVHIYDCKGNGTPLHVLDRLH--TKPVVLIKFNPIYQVVVSVDKA-----GILEY  208 (261)
Q Consensus       141 ~~~~~~-~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~i  208 (261)
                      .+.|+| ++..+++++....    ..|.+||+. .++ ...+. .+  ...+..+.|+|+|++|+..+.+     +.|.+
T Consensus       192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~~-~~~l~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (396)
T 3c5m_A          192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-GSN-VRKIK-EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK  268 (396)
T ss_dssp             EEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-SCC-CEESS-CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred             cceECCCCCCEEEEEecCCCCCCCceEEEEECC-CCc-eeEee-ccCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence            899999 6765434443222    468888886 443 33333 22  3357889999999987766533     44999


Q ss_pred             eecccccccCCeeeeeecccccceeecCCCccceeeeeECC-CCceEEEee
Q psy6859         209 WSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP-DGNKFVTIS  258 (261)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~  258 (261)
                      ||+.+++             .+.+..+.+    .. +.|+| ||++|++++
T Consensus       269 ~d~~~g~-------------~~~l~~~~~----~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          269 ANPETLE-------------NEEVMVMPP----CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             ECTTTCC-------------EEEEEECCS----EE-EEEECSSSSEEEEEE
T ss_pred             EECCCCC-------------eEEeeeCCC----CC-CCccCCCCceEEEec
Confidence            9986421             111222222    22 88999 999888754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=2.2e-18  Score=144.06  Aligned_cols=229  Identities=13%  Similarity=0.052  Sum_probs=151.4

Q ss_pred             CeEEEEEcC-CCeEEEecC---------CCeEEEEeccCCceeee--EEeeccccceeEEEEeeCCCEEEEEeCCCcEEE
Q psy6859           5 PITHVVVTK-TDFVITASN---------DGHIKFWKKQEEGIEFV--KHFRSHLGVIHSICTNYNGTLLCTVASDKAMKV   72 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~---------d~~i~iw~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~   72 (261)
                      .|.+++||| +++|++++.         ++.|++||++++  +.+  ..+   ...+..++|+|||+.|+.+. ++.|++
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g--~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~  134 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG--EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYL  134 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC--ccccceec---CcccccceECCCCCEEEEEE-CCeEEE
Confidence            488999999 899988876         789999999886  331  222   25688999999999999875 789999


Q ss_pred             EEccccceeeeeeccC-c-----------------ceeEEEEeecCCceeeeeeecC-----------------------
Q psy6859          73 FDVINFDMINMIKLDF-T-----------------PLTVECIHYLGDAIPTAAVSDQ-----------------------  111 (261)
Q Consensus        73 wd~~~~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~s~~-----------------------  111 (261)
                      |++.+++......... .                 ......++|+++.++......+                       
T Consensus       135 ~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y  214 (719)
T 1z68_A          135 KQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY  214 (719)
T ss_dssp             ESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred             EeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence            9998877654322111 1                 1136889999998877632211                       


Q ss_pred             -------CCCeEEEEEcCCCcee--eEEe----ecCCcceEEEEEEeCCCCceEEEEec--CC--CeEEEEE----ccCC
Q psy6859         112 -------DSSRVHIYDCKGNDMI--NMIK----LDFTPLTVECIHYLGDAIPTAAVSDQ--DS--SHVHIYD----CKGN  170 (261)
Q Consensus       112 -------~d~~i~i~d~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~d--~~i~i~d----~~~~  170 (261)
                             ....|.+||+.+++..  ..+.    ...+...+..++|+||+..  +++..  .+  ..|.+||    .. +
T Consensus       215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~--~~~~~~~~~~~~~l~~~d~~~~~~-~  291 (719)
T 1z68_A          215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV--CLQWLKRVQNVSVLSICDFREDWQ-T  291 (719)
T ss_dssp             CBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE--EEEEEESSTTEEEEEEEEECSSSS-S
T ss_pred             CCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeE--EEEEeccccCeEEEEEEcccCCCC-C
Confidence                   1127889999987653  1111    1124557899999999652  44422  22  3488899    76 6


Q ss_pred             Cccceeec---cCcccCeE-----EEEEcCCCCEEE--EEcCCC--eEEEeecccccccCCeeeeeecccccceeecCCC
Q psy6859         171 GTPLHVLD---RLHTKPVV-----LIKFNPIYQVVV--SVDKAG--ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN  238 (261)
Q Consensus       171 ~~~~~~~~---~~~~~~v~-----~~~~~~~~~~l~--~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (261)
                      ++....+.   ..|...+.     .+.|+|||+.|+  +...+|  .|.+||+.+               ++ ...+..+
T Consensus       292 g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~---------------~~-~~~lt~~  355 (719)
T 1z68_A          292 WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV---------------EN-AIQITSG  355 (719)
T ss_dssp             EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS---------------TT-CEECSCS
T ss_pred             CceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC---------------Cc-eEecccC
Confidence            65554441   15666666     789999999554  354555  466666643               22 3445555


Q ss_pred             ccceeeeeECCCCceEEEeec
Q psy6859         239 KTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       239 ~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ...+..+.++ +++.|+..+.
T Consensus       356 ~~~v~~~~~~-d~~~i~~~~~  375 (719)
T 1z68_A          356 KWEAINIFRV-TQDSLFYSSN  375 (719)
T ss_dssp             SSCEEEEEEE-CSSEEEEEES
T ss_pred             ceEEEEEEEE-eCCEEEEEEe
Confidence            5567777777 7777776654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.80  E-value=8.1e-17  Score=118.98  Aligned_cols=187  Identities=13%  Similarity=0.063  Sum_probs=142.2

Q ss_pred             cCCCeEEEecCCCeEEEEeccCCceeeeEEeeccc-cceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccC-c
Q psy6859          12 TKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL-GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDF-T   89 (261)
Q Consensus        12 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-~   89 (261)
                      +|+++|++++.|+.|.+||.+++  +.+.++..+. ..+.++.++|+|++++  +.++.|..||. +++.+..+..+. .
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG--~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~   77 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTK--EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC   77 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTT--EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred             CCCcEEEeeCCCCEEEEEECCCC--eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence            46889999999999999999887  7788887665 4689999999999888  45778999998 899999888642 3


Q ss_pred             ceeEEEEeecCCceeeeeeecCC-CCeEEEEEcCCCceeeEEeecC----CcceEEEEEEeCCCCceEEEEecCCCeEEE
Q psy6859          90 PLTVECIHYLGDAIPTAAVSDQD-SSRVHIYDCKGNDMINMIKLDF----TPLTVECIHYLGDAIPTAAVSDQDSSHVHI  164 (261)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~s~~~-d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  164 (261)
                      ........++++.+++.    +. ++.+..+|. +++.+..+....    .......+++.+++..  +++...++.|..
T Consensus        78 ~~~~~~~~~dG~~lv~~----~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~--lv~~~~~~~v~~  150 (276)
T 3no2_A           78 EMQTARILPDGNALVAW----CGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY--LVPLFATSEVRE  150 (276)
T ss_dssp             EEEEEEECTTSCEEEEE----ESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE--EEEETTTTEEEE
T ss_pred             cccccEECCCCCEEEEe----cCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE--EEEecCCCEEEE
Confidence            44555666777766654    34 677888886 566666665421    1123345567888875  778888999999


Q ss_pred             EEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         165 YDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       165 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      ||..  ++.+.++. . ...+.++...++|++++++..++.|..+|..++
T Consensus       151 ~d~~--G~~~w~~~-~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG  196 (276)
T 3no2_A          151 IAPN--GQLLNSVK-L-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN  196 (276)
T ss_dssp             ECTT--SCEEEEEE-C-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred             ECCC--CCEEEEEE-C-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence            9974  78888885 3 345667888999999999888889999998643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=1.3e-16  Score=122.84  Aligned_cols=228  Identities=7%  Similarity=-0.007  Sum_probs=142.0

Q ss_pred             eEEEecCC--CeEEEEecc--CCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc-ccceeeeeecc--
Q psy6859          16 FVITASND--GHIKFWKKQ--EEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI-NFDMINMIKLD--   87 (261)
Q Consensus        16 ~l~s~~~d--~~i~iw~~~--~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~-~~~~~~~~~~~--   87 (261)
                      .++.|+..  +.|.+|+++  ++....+.... .....+..++|+|++++|++++.+ .|.+|++. +++........  
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            34555543  578888764  33223233222 233467899999999999998888 99999997 77655433221  


Q ss_pred             CcceeEEEEeecCCceeeeeee-------cC----CCCeEEEEEcC-CCceeeEEeec--CCcceEEEEEEeCCCCceEE
Q psy6859          88 FTPLTVECIHYLGDAIPTAAVS-------DQ----DSSRVHIYDCK-GNDMINMIKLD--FTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~s-------~~----~d~~i~i~d~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  153 (261)
                      .. ...+.++++++.++.....       +.    .++.+.+|++. .++....+...  .....+.++.|+|++.+ ++
T Consensus        83 g~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~-l~  160 (365)
T 1jof_A           83 GH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-LY  160 (365)
T ss_dssp             SS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-EE
T ss_pred             CC-CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-EE
Confidence            22 2234566777642221110       11    68899999997 45554444321  12346789999999985 34


Q ss_pred             EEecCCCeEEEEEccCCCcc--ceeecc-CcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCCeeeeeecccc
Q psy6859         154 VSDQDSSHVHIYDCKGNGTP--LHVLDR-LHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLD  229 (261)
Q Consensus       154 ~~~~~d~~i~i~d~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~  229 (261)
                      ++...++.|++||+..+++.  +..+.. .+...+..++|+|+|++|++++ .++.|.+|+++..             ++
T Consensus       161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-------------~g  227 (365)
T 1jof_A          161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-------------TH  227 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-------------TC
T ss_pred             EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-------------CC
Confidence            44445789999999622332  223320 1356789999999999887766 4789999987421             11


Q ss_pred             cc------eeecC----CCcc------ceeeee-ECCCCceEEEeec
Q psy6859         230 TD------LFEFA----KNKT------YPSGLS-FSPDGNKFVTISM  259 (261)
Q Consensus       230 ~~------~~~~~----~~~~------~v~~~~-~s~~~~~l~s~~~  259 (261)
                      +.      +..+.    +|..      .+..++ |+|||++|++++.
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            11      11221    2232      578999 9999999887653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.80  E-value=2.8e-16  Score=119.20  Aligned_cols=223  Identities=9%  Similarity=-0.024  Sum_probs=155.6

Q ss_pred             CeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859           5 PITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         5 ~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      ....+.+..+..+++...++.|.+||..+.  +.+.++. .......++++++++.+++...++.|.+||..+++....+
T Consensus        45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~--~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTF--KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             CEEEEEEETTEEEEEEGGGTEEEEEETTTC--CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             cceEEEEECCEEEEEEcCCCEEEEEECccc--EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            356777766667777778899999999987  6666665 3356789999999855555447899999999999888777


Q ss_pred             eccC------cceeEEEEeecCCceeeeeeecC-CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          85 KLDF------TPLTVECIHYLGDAIPTAAVSDQ-DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        85 ~~~~------~~~~~~~~~~~~~~~~~~~~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ....      .+..+. +  +++.++..   .. .++.|.++|+.+++.+..+.....   ...+.++|++..  ++++.
T Consensus       122 ~~g~~~~~~~~p~~i~-~--~~~~lyv~---~~~~~~~v~viD~~t~~~~~~i~~g~~---p~~i~~~~dG~l--~v~~~  190 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMV-Q--YGKYVYVN---CWSYQNRILKIDTETDKVVDELTIGIQ---PTSLVMDKYNKM--WTITD  190 (328)
T ss_dssp             ECTTCCTTTCBCCCEE-E--ETTEEEEE---ECTTCCEEEEEETTTTEEEEEEECSSC---BCCCEECTTSEE--EEEBC
T ss_pred             EcCCccccCCCcceEE-E--ECCEEEEE---cCCCCCEEEEEECCCCeEEEEEEcCCC---ccceEEcCCCCE--EEEEC
Confidence            7655      444333 3  45555544   12 488999999999988888775443   357788998863  55544


Q ss_pred             CC----------CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecc
Q psy6859         158 DS----------SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESK  227 (261)
Q Consensus       158 ~d----------~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  227 (261)
                      .+          +.|.++|.. +++....+..........++++|+++.|+++..  .|.+||+.+++..          
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~-t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~----------  257 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAE-TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP----------  257 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETT-TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC----------
T ss_pred             CCccCCccccCCceEEEEECC-CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee----------
Confidence            43          789999998 777776664122346899999999998887765  8999998653210          


Q ss_pred             cccceeecCCCccceeeeeECCC-CceEEEe
Q psy6859         228 LDTDLFEFAKNKTYPSGLSFSPD-GNKFVTI  257 (261)
Q Consensus       228 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~  257 (261)
                         ....+......+..++++|+ ++++++.
T Consensus       258 ---~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          258 ---VRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             ---SSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             ---eeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence               00111112456788999994 4444443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=2.2e-17  Score=136.85  Aligned_cols=235  Identities=8%  Similarity=-0.023  Sum_probs=151.0

Q ss_pred             CCCCCeEEEEEcC-CCeEEEe--cCCCeEEEEeccCCceeeeEEeecccccee---------EEEEe--eCCCE-EEEEe
Q psy6859           1 MHRSPITHVVVTK-TDFVITA--SNDGHIKFWKKQEEGIEFVKHFRSHLGVIH---------SICTN--YNGTL-LCTVA   65 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~s~~   65 (261)
                      +|...|..++|++ .-++++.  +.++...||.....  .....+..|...+.         ...|+  ||++. |+.++
T Consensus        21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~   98 (662)
T 3azo_A           21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH   98 (662)
T ss_dssp             HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred             hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence            4788899999998 4455665  66889999996443  23445555665655         66666  99988 77655


Q ss_pred             C-CCcEEEEEcc--c-cceeeeeec-----cCcceeEEEEeecCCceeeeeeecCCC----------CeEEEEEcCC---
Q psy6859          66 S-DKAMKVFDVI--N-FDMINMIKL-----DFTPLTVECIHYLGDAIPTAAVSDQDS----------SRVHIYDCKG---  123 (261)
Q Consensus        66 ~-dg~v~~wd~~--~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~d----------~~i~i~d~~~---  123 (261)
                      . +..|.++++.  . ++ ...+..     +........++++++.++..    +.+          ..|.+||+.+   
T Consensus        99 ~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           99 FGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCM----AEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             TTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEE----EEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             CCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEE----EecccCCCCCCceeEEEEEECCCCcc
Confidence            3 5567777765  2 33 333332     23345677889999988776    333          5899999988   


Q ss_pred             ---CceeeEEeecCCcceEEEEEEeCCCCceEEEEecC------CCeEEEEEccCCC--ccceeeccCcccCeEEEEEcC
Q psy6859         124 ---NDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD------SSHVHIYDCKGNG--TPLHVLDRLHTKPVVLIKFNP  192 (261)
Q Consensus       124 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~  192 (261)
                         ++.. .+.. .....+..+.|+||+.++++.+...      ...|++||+..++  .....+...+...+..+.|+|
T Consensus       174 ~~~~~~~-~l~~-~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp  251 (662)
T 3azo_A          174 ADRSAVR-ELSD-DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP  251 (662)
T ss_dssp             TCGGGSE-ESSC-SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred             ccCCcee-EEEe-cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence               5443 2220 2334677889999998743333222      1479999997224  133333314578899999999


Q ss_pred             CCCEEEEEcCCC--eEEEeecccccccCCeeeeeecccccceeecCCCccc--------eeeeeECCCCceEEEeec
Q psy6859         193 IYQVVVSVDKAG--ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTY--------PSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       193 ~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~s~~~  259 (261)
                      ||++++++..++  .|.+||+.+               ++.......+...        +..++|+|+++++++++.
T Consensus       252 dg~l~~~~~~~~~~~l~~~~~~~---------------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~  313 (662)
T 3azo_A          252 DGSLIVATDRTGWWNLHRVDPAT---------------GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK  313 (662)
T ss_dssp             TSCEEEEECTTSSCEEEEECTTT---------------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred             CCeEEEEECCCCCeEEEEEECCC---------------CceeecccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence            999888888888  555566533               2222222222211        567889999998888754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=2.9e-16  Score=119.24  Aligned_cols=201  Identities=10%  Similarity=0.078  Sum_probs=147.8

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe---------eccccceeEEEEee-CCCEEEEEe-CCCcE
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF---------RSHLGVIHSICTNY-NGTLLCTVA-SDKAM   70 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~s~~-~dg~v   70 (261)
                      -.....++++| ++++++...++.|++|+.+... ..+..+         .++-.....++++| +++++++.+ .++.|
T Consensus        90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            35678999999 8888888899999999986531 134444         23444678999999 788888876 68999


Q ss_pred             EEEEccccceeeeeeccC----------cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEE
Q psy6859          71 KVFDVINFDMINMIKLDF----------TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVE  140 (261)
Q Consensus        71 ~~wd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  140 (261)
                      ++|+ .+++.+..+....          .....+.+.+++..++.+   ...++.|++||..+++.+..+........+.
T Consensus       169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~---d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~  244 (329)
T 3fvz_A          169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA---DRENGRIQCFKTDTKEFVREIKHASFGRNVF  244 (329)
T ss_dssp             EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE---ETTTTEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred             EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE---ECCCCEEEEEECCCCcEEEEEeccccCCCcc
Confidence            9999 5677766654221          114456677764444333   3678999999999888888886655555778


Q ss_pred             EEEEeCCCCceEEEE-------ecCCCeEEEEEccCCCccceeec--cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         141 CIHYLGDAIPTAAVS-------DQDSSHVHIYDCKGNGTPLHVLD--RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~-------~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      .++++| +.  ++.+       ...+..|++||.. +++.+..+.  ..+...+..|+++|+|.++++...++.|++|++
T Consensus       245 ~~~~~p-g~--~~~~~g~~~v~~~~~~~v~~~~~~-~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          245 AISYIP-GF--LFAVNGKPYFGDQEPVQGFVMNFS-SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             EEEEET-TE--EEEEECCCCTTCSCCCCEEEEETT-TCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             eeeecC-CE--EEEeCCCEEeccCCCcEEEEEEcC-CCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            899999 31  2222       3345589999998 888888773  146667899999999988888889999999998


Q ss_pred             c
Q psy6859         212 Y  212 (261)
Q Consensus       212 ~  212 (261)
                      .
T Consensus       321 ~  321 (329)
T 3fvz_A          321 T  321 (329)
T ss_dssp             E
T ss_pred             C
Confidence            5

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.77  E-value=7.9e-16  Score=128.48  Aligned_cols=233  Identities=8%  Similarity=-0.069  Sum_probs=153.5

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCC-----eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCc------
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDG-----HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKA------   69 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~------   69 (261)
                      |+..+..++||| +++||.++.++     .|++||+.++  +.......+ ..+..++|+|||+.|+.++.++.      
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg--~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--KELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--EEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--CCCcccccC-cccceEEEEeCCCEEEEEEECCccccccc
Confidence            444688999999 88888665433     8999999987  443322212 23678999999999999887765      


Q ss_pred             ----------EEEEEcccccee--eeeecc--CcceeEEEEeecCCceeeeeeecCC-CCeEEEEEcCC------Cc-ee
Q psy6859          70 ----------MKVFDVINFDMI--NMIKLD--FTPLTVECIHYLGDAIPTAAVSDQD-SSRVHIYDCKG------ND-MI  127 (261)
Q Consensus        70 ----------v~~wd~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~-d~~i~i~d~~~------~~-~~  127 (261)
                                |++|++.+++..  ..+...  ........++++++.++.....+.. +..|.+||+.+      +. ..
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence                      999999877632  222222  2224566788999887765332222 67999999986      43 34


Q ss_pred             eEEeecCCcceEEEEEEeCCCCceEEEEec--CCCeEEEEEccCCCc--cceeeccCccc--CeEEEEEcCCCCEEEEEc
Q psy6859         128 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQ--DSSHVHIYDCKGNGT--PLHVLDRLHTK--PVVLIKFNPIYQVVVSVD  201 (261)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~--~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~  201 (261)
                      ..+..+...  ... .+++++..+++.+..  ..+.|.+||+. ++.  ....+. .+..  .+..+.|++++.++++..
T Consensus       280 ~~l~~~~~~--~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~-~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~lv~~~~  354 (710)
T 2xdw_A          280 VKLIDNFEG--EYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT-DPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYL  354 (710)
T ss_dssp             EEEECSSSS--CEE-EEEEETTEEEEEECTTCTTCEEEEEETT-SCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             EEeeCCCCc--EEE-EEeccCCEEEEEECCCCCCCEEEEEeCC-CCCcccceecc-CCCCCCeEEEEEEEcCCEEEEEEE
Confidence            444433222  222 467787764444432  13479999987 543  234443 4433  688899998888888888


Q ss_pred             CCCeEE--EeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEe
Q psy6859         202 KAGILE--YWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       202 ~dg~i~--iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  257 (261)
                      .|+..+  +|++.               +++.+..+..+...+..+.++|+++.|+..
T Consensus       355 ~~g~~~l~~~~~~---------------~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          355 HDVKNTLQLHDLA---------------TGALLKIFPLEVGSVVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             ETTEEEEEEEETT---------------TCCEEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred             ECCEEEEEEEECC---------------CCCEEEecCCCCceEEEEecCCCCCEEEEE
Confidence            888654  45542               345556666677788899999998766543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=1.1e-16  Score=124.20  Aligned_cols=205  Identities=12%  Similarity=0.035  Sum_probs=137.8

Q ss_pred             eccCCceeeeEEeeccccceeE-----EEEeeCCCEEEEEeC-CC--cEEEEEccccceeeeeeccCcceeEEEEeecCC
Q psy6859          30 KKQEEGIEFVKHFRSHLGVIHS-----ICTNYNGTLLCTVAS-DK--AMKVFDVINFDMINMIKLDFTPLTVECIHYLGD  101 (261)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~s~~~-dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (261)
                      +..++  .....+..|......     .+|+|||++|+.++. ++  .|.+||+.+++.......+........++++++
T Consensus        16 ~~~~g--~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~   93 (388)
T 3pe7_A           16 DASTG--AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD   93 (388)
T ss_dssp             CTTTC--CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred             cCCCC--cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence            44444  455666666655544     789999999998887 66  488889988877665544433333457899999


Q ss_pred             ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE--------------------ecCCCe
Q psy6859         102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS--------------------DQDSSH  161 (261)
Q Consensus       102 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~d~~  161 (261)
                      .++..    +.++.|.+||+.+++.......+..........+++++..++.+.                    ...+..
T Consensus        94 ~l~~~----~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
T 3pe7_A           94 ALFYV----KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR  169 (388)
T ss_dssp             EEEEE----ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred             EEEEE----eCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence            88777    678899999999998766665443222222334588887522111                    224578


Q ss_pred             EEEEEccCCCccceeeccCcccCeEEEEEcC-CCCEEEEEcCC------CeEEEeecccccccCCeeeeeecccccceee
Q psy6859         162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP-IYQVVVSVDKA------GILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                      |++||+. +++.....  .+...+..+.|+| +|+.|+....+      ..|.++|+..                .....
T Consensus       170 l~~~d~~-~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~----------------~~~~~  230 (388)
T 3pe7_A          170 LMRVDLK-TGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG----------------TNMRK  230 (388)
T ss_dssp             EEEEETT-TCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS----------------CCCEE
T ss_pred             EEEEECC-CCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC----------------CceEE
Confidence            9999998 66544433  5667789999999 99988776643      3677777642                22333


Q ss_pred             cCCCc--cceeeeeECCCCceEEEeec
Q psy6859         235 FAKNK--TYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       235 ~~~~~--~~v~~~~~s~~~~~l~s~~~  259 (261)
                      +..+.  ..+..++|+|||+.|+..+.
T Consensus       231 l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          231 VKTHAEGESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             SCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             eeeCCCCcccccceECCCCCEEEEEec
Confidence            33333  35778999999998876554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=2.5e-16  Score=132.01  Aligned_cols=202  Identities=10%  Similarity=0.003  Sum_probs=132.3

Q ss_pred             EEEEEcC-CCeEEEecCC---------CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859           7 THVVVTK-TDFVITASND---------GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~   76 (261)
                      ..++||| +++|+.++.+         +.+.+||+.++  +. ..+..|.+.+...+|+|||+.|+.+ .++.|++|++.
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~--~~-~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~  140 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR--QL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEP  140 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESST
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC--cE-EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECC
Confidence            4478999 8999988876         56679999987  43 3456677889999999999999987 56899999998


Q ss_pred             ccceeeeeeccC------------------cceeEEEEeecCCceeeeeeecC---------------------------
Q psy6859          77 NFDMINMIKLDF------------------TPLTVECIHYLGDAIPTAAVSDQ---------------------------  111 (261)
Q Consensus        77 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~s~~---------------------------  111 (261)
                      +++..+......                  ......+++|+++.++....-.+                           
T Consensus       141 ~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~  220 (740)
T 4a5s_A          141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK  220 (740)
T ss_dssp             TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred             CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence            876543211111                  01123678999988776532111                           


Q ss_pred             ---C--CCeEEEEEcCC---Cce--eeEEeec----CCcceEEEEEEeCCCCceEEEEe--cCCCeEEEEEccCCCc---
Q psy6859         112 ---D--SSRVHIYDCKG---NDM--INMIKLD----FTPLTVECIHYLGDAIPTAAVSD--QDSSHVHIYDCKGNGT---  172 (261)
Q Consensus       112 ---~--d~~i~i~d~~~---~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~---  172 (261)
                         .  ...|.+||+.+   ++.  ...+...    .+...+..++|+|++...+....  +.+..|.+||+. +++   
T Consensus       221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~-tg~~~~  299 (740)
T 4a5s_A          221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD-ESSGRW  299 (740)
T ss_dssp             TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE-TTTTEE
T ss_pred             CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC-CCcccc
Confidence               1  12688899998   742  2222211    14557889999999974332332  223479999998 766   


Q ss_pred             -c--ceee-ccCcccCeE-----EEEEcCCCCEEE-EEc-CCC--eEEEeeccc
Q psy6859         173 -P--LHVL-DRLHTKPVV-----LIKFNPIYQVVV-SVD-KAG--ILEYWSGYK  213 (261)
Q Consensus       173 -~--~~~~-~~~~~~~v~-----~~~~~~~~~~l~-~~~-~dg--~i~iwd~~~  213 (261)
                       +  +..+ ...+...+.     .+.|+|||+.|+ ..+ .+|  .|.+||+.+
T Consensus       300 ~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~  353 (740)
T 4a5s_A          300 NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK  353 (740)
T ss_dssp             EECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred             ceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence             1  2222 114555544     688999999776 554 444  577777643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=3.9e-17  Score=126.96  Aligned_cols=226  Identities=9%  Similarity=-0.045  Sum_probs=140.8

Q ss_pred             EEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeE-------------------EEEeeCCCEEEEE---
Q psy6859           8 HVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHS-------------------ICTNYNGTLLCTV---   64 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~s~---   64 (261)
                      .+.|+| ++.|+.++.++.|.+|++.++.  .......+......                   +.|+|+++.++..   
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  162 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLE--EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY  162 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCC--EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCC--cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence            367999 8899999999999999998763  33333323322212                   3456677666544   


Q ss_pred             --eCCCcEEEEEccccceeeeeeccCcceeEEEEee-cCCceeeeeeecCCC----CeEEEEEcCCCceeeEEeecCCcc
Q psy6859          65 --ASDKAMKVFDVINFDMINMIKLDFTPLTVECIHY-LGDAIPTAAVSDQDS----SRVHIYDCKGNDMINMIKLDFTPL  137 (261)
Q Consensus        65 --~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~d----~~i~i~d~~~~~~~~~~~~~~~~~  137 (261)
                        ..+..|.+||+.+++...... .........+++ ++..++.+.  ....    ..|.+||+.+++...... .....
T Consensus       163 ~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~sp~dg~~l~~~~--~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~  238 (396)
T 3c5m_A          163 HTNPTCRLIKVDIETGELEVIHQ-DTAWLGHPIYRPFDDSTVGFCH--EGPHDLVDARMWLVNEDGSNVRKIKE-HAEGE  238 (396)
T ss_dssp             HTCCCEEEEEEETTTCCEEEEEE-ESSCEEEEEEETTEEEEEEEEE--CSCSSSCSCCCEEEETTSCCCEESSC-CCTTE
T ss_pred             cCCCcceEEEEECCCCcEEeecc-CCcccccceECCCCCCEEEEEe--cCCCCCCCceEEEEECCCCceeEeec-cCCCc
Confidence              356689999998877655443 333455566777 666555541  1222    578999987665333222 21233


Q ss_pred             eEEEEEEeCCCCceEEEEec-CC--CeEEEEEccCCCccceeeccCcccCeEEEEEcC-CCCEEEEEc------------
Q psy6859         138 TVECIHYLGDAIPTAAVSDQ-DS--SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP-IYQVVVSVD------------  201 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------------  201 (261)
                      .+..+.|+|++..+++++.. ..  +.|++||+. +++......  .. ... +.|+| +|++++.++            
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~-~g~~~~l~~--~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~  313 (396)
T 3c5m_A          239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE-TLENEEVMV--MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADS  313 (396)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT-TCCEEEEEE--CC-SEE-EEEECSSSSEEEEEECCC---------
T ss_pred             cccceEECCCCCEEEEEecCCCCccceEEEEECC-CCCeEEeee--CC-CCC-CCccCCCCceEEEecCCcceeeccccc
Confidence            67889999999874443322 12  449999997 665433221  11 123 89999 999887654            


Q ss_pred             ----CCCeEEEeecccccccCCeeeeeecccccceeecCCCcc-----------ceeeeeECCCCceEEEeecC
Q psy6859         202 ----KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT-----------YPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       202 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~D  260 (261)
                          .+..|.+||+.++               + ...+..+..           .+..++|+|||+.|+.++.+
T Consensus       314 ~~~~~~~~i~~~d~~~~---------------~-~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          314 YNIENDPFLYVLNTKAK---------------S-AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             -CCCCCCEEEEEETTTT---------------B-CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             cccCCCCcEEEEecccC---------------c-eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecC
Confidence                3478999998542               1 122222322           25678999999999887653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=1.7e-15  Score=115.77  Aligned_cols=216  Identities=12%  Similarity=0.057  Sum_probs=134.6

Q ss_pred             CeEEEEEcC-CCeEEEecCC---C--eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----------
Q psy6859           5 PITHVVVTK-TDFVITASND---G--HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----------   67 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d---~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------   67 (261)
                      .+..++|+| ++.|+..+.+   +  .|.+|++.++  +...... +.. +..++|+||++.|+.++.+           
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g--~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL--SSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT--EEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC--ceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence            467899999 8888877653   3  4777777765  4433333 334 8999999999998887642           


Q ss_pred             ----------------CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCC----C-eEEEEEcCCCce
Q psy6859          68 ----------------KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS----S-RVHIYDCKGNDM  126 (261)
Q Consensus        68 ----------------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d----~-~i~i~d~~~~~~  126 (261)
                                      ..|.+||+.+++.+..+...  ......+++++ .+++.  ....+    . ...+|.+.+++.
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~--~~~~~~~spdg-~~~~~--~~~~~~~~~~~~~~l~~~d~~~~  210 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP--RFSSGIWHRDK-IVVNV--PHREIIPQYFKFWDIYIWEDGKE  210 (347)
T ss_dssp             -CCCC---------CEEEEEEEETTTTEEEEEEEEE--TTCEEEEETTE-EEEEE--ECCCSSCCSSCCEEEEEEETTEE
T ss_pred             ccceeecCcccccCccceEEEEECCCCeEEeeecCC--CcccccCCCCe-EEEEE--ecccccccccccccEEEeCCCce
Confidence                            56899999888764444432  45566777777 33322  11111    2 334444334443


Q ss_pred             eeEEeecCCcceEEEEEEeCCCCceEEEEecC------CCeEEEEEccCCCccceeeccCcccCeEE-EEEcCCCCEEEE
Q psy6859         127 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQD------SSHVHIYDCKGNGTPLHVLDRLHTKPVVL-IKFNPIYQVVVS  199 (261)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~  199 (261)
                       ..+...   ..+..+  +|++..+++++...      ...|.+||   +++...... .+...+.. +.|+ ++ ++++
T Consensus       211 -~~l~~~---~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d---~~~~~~l~~-~~~~~~~~~~~~s-dg-~~~~  278 (347)
T 2gop_A          211 -EKMFEK---VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD---GKEVMGILD-EVDRGVGQAKIKD-GK-VYFT  278 (347)
T ss_dssp             -EEEEEE---ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC---SSCEEESST-TCCSEEEEEEEET-TE-EEEE
T ss_pred             -EEeccC---cceeeE--CCCCCEEEEEEccccCCccccceEEEEC---CCceEeccc-cCCcccCCccEEc-Cc-EEEE
Confidence             333322   233333  89998743333221      24677777   344443343 56677886 8999 88 8899


Q ss_pred             EcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         200 VDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       200 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                      ++.++.++|| +.+               ++.. .+..+...|.+++|+|  .++++++.+
T Consensus       279 ~~~~~~~~l~-~~~---------------g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~  320 (347)
T 2gop_A          279 LFEEGSVNLY-IWD---------------GEIK-PIAKGRHWIMGFDVDE--IVVYLKETA  320 (347)
T ss_dssp             EEETTEEEEE-EES---------------SSEE-EEECSSSEEEEEEESS--SEEEEEECS
T ss_pred             EecCCcEEEE-EcC---------------CceE-EEecCCCeEEeeeeeC--cEEEEEcCC
Confidence            9999999999 852               2222 2333467889999999  566666554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=4.6e-16  Score=128.95  Aligned_cols=227  Identities=8%  Similarity=-0.066  Sum_probs=142.8

Q ss_pred             EEEEc--C-CCe-EEEecC-CCeEEEEecc--C-CceeeeEEeec-----cccceeEEEEeeCCCEEEEEeCC-------
Q psy6859           8 HVVVT--K-TDF-VITASN-DGHIKFWKKQ--E-EGIEFVKHFRS-----HLGVIHSICTNYNGTLLCTVASD-------   67 (261)
Q Consensus         8 ~~~~~--~-~~~-l~s~~~-d~~i~iw~~~--~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d-------   67 (261)
                      ...|+  | ++. |+.++. +..|.+++..  + +  + ...+..     |...+..++|+|||+.|+.++.+       
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~--~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~  157 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA--V-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS  157 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC--C-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC--C-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence            45555  8 777 665543 5667777765  2 3  2 223333     56778999999999999998876       


Q ss_pred             ---CcEEEEEccc------cceeeeee-ccCcceeEEEEeecCCceeeeeeecC----CCCeEEEEEcC-CCc--eeeEE
Q psy6859          68 ---KAMKVFDVIN------FDMINMIK-LDFTPLTVECIHYLGDAIPTAAVSDQ----DSSRVHIYDCK-GND--MINMI  130 (261)
Q Consensus        68 ---g~v~~wd~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~----~d~~i~i~d~~-~~~--~~~~~  130 (261)
                         ..|++||+.+      ++... +. .+........++++++.++.......    ....|.+||+. ++.  ....+
T Consensus       158 ~~~~~i~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l  236 (662)
T 3azo_A          158 DVRRFLAAVPLDGSAAADRSAVRE-LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL  236 (662)
T ss_dssp             CEEEEEEEEETTSTTTTCGGGSEE-SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred             CceeEEEEEECCCCccccCCceeE-EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence               5899999987      55433 32 23344555678999988876521110    12489999999 562  22233


Q ss_pred             eecCCcceEEEEEEeCCCCceEEEEecCCC--eEEEEEccCCCccceeeccCcccC--------eEEEEEcCCCCEEEEE
Q psy6859         131 KLDFTPLTVECIHYLGDAIPTAAVSDQDSS--HVHIYDCKGNGTPLHVLDRLHTKP--------VVLIKFNPIYQVVVSV  200 (261)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~  200 (261)
                      ... +...+..+.|+|++.  +++++..++  .|.+||+. +++...... .+...        +..++|+|++++++++
T Consensus       237 ~~~-~~~~~~~~~~spdg~--l~~~~~~~~~~~l~~~~~~-~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          237 LGG-PEEAIAQAEWAPDGS--LIVATDRTGWWNLHRVDPA-TGAATQLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             EEE-TTBCEEEEEECTTSC--EEEEECTTSSCEEEEECTT-TCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             CCC-CCceEcceEECCCCe--EEEEECCCCCeEEEEEECC-CCceeeccc-ccccccCccccccCceEeEeCCCEEEEEE
Confidence            221 234678999999998  356666677  56666664 454433332 22221        5678999999999999


Q ss_pred             cCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeee-eECCCCceEEEee
Q psy6859         201 DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGL-SFSPDGNKFVTIS  258 (261)
Q Consensus       201 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~  258 (261)
                      .. +.++||.+..             . +..+..+..|...+..+ +++++.-++++++
T Consensus       312 ~~-~~~~l~~~d~-------------~-~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~  355 (662)
T 3azo_A          312 GK-GAAVLGILDP-------------E-SGELVDAAGPWTEWAATLTVSGTRAVGVAAS  355 (662)
T ss_dssp             BS-SSCEEEEEET-------------T-TTEEEECCSSCCEEEEEEEEETTEEEEEEEE
T ss_pred             Ec-CccEEEEEEC-------------C-CCcEEEecCCCCeEEEEEecCCCEEEEEEcC
Confidence            98 9999995531             1 22355666677777766 4443333333333

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=4e-15  Score=109.69  Aligned_cols=227  Identities=9%  Similarity=-0.005  Sum_probs=145.6

Q ss_pred             CeEEEEEcC-CCeEE-EecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           5 PITHVVVTK-TDFVI-TASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      ...++++++ +++++ +...++.|.+|+..+.  ........+...+.+++++++++++++.. ++.|.+||....... 
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCc--ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-
Confidence            567899999 77666 5577899999987654  22111122335678999999998666655 889999998654432 


Q ss_pred             eeec-cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          83 MIKL-DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      .+.. .......+.+.+++...++.    ..++.|.+|+..+.......  ......+..+++++++.  ++++...++.
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~----~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g~--l~v~~~~~~~  172 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVAD----RGNNRVVKLAAGSKTQTVLP--FTGLNDPDGVAVDNSGN--VYVTDTDNNR  172 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEE----GGGTEEEEECTTCCSCEECC--CCSCCSCCCEEECTTCC--EEEEEGGGTE
T ss_pred             eeecCCcCCCcceEECCCCCEEEEE----CCCCEEEEEECCCceeEeec--cccCCCceeEEEeCCCC--EEEEECCCCE
Confidence            2221 21334456666666533332    45788999976554332211  11122457888999886  3666666789


Q ss_pred             EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccc
Q psy6859         162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTY  241 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (261)
                      |.+||.. ......... .....+.+++++++|.++++...++.|.+|+....               ........+...
T Consensus       173 i~~~~~~-~~~~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~  235 (270)
T 1rwi_B          173 VVKLEAE-SNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST---------------TSTVLPFTGLNT  235 (270)
T ss_dssp             EEEECTT-TCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS---------------CCEECCCCSCSC
T ss_pred             EEEEecC-CCceEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC---------------cceeeccCCCCC
Confidence            9999987 444333222 33367899999999987777777889999997531               111111223356


Q ss_pred             eeeeeECCCCceEEEeecC
Q psy6859         242 PSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       242 v~~~~~s~~~~~l~s~~~D  260 (261)
                      +.+++++|+|+++++...+
T Consensus       236 p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          236 PLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             EEEEEECTTCCEEEEEGGG
T ss_pred             ceeEEECCCCCEEEEECCC
Confidence            8899999999977776554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.74  E-value=1.2e-15  Score=116.00  Aligned_cols=235  Identities=10%  Similarity=0.016  Sum_probs=151.7

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      ..|.+++|++ ...++..+.++.++.|.   .  +....+..+...+.+++|++++++++++..++.|.+||..+++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~   80 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---A--EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR   80 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C--EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred             cccceeeecCCccceeEEeecccCcccc---c--ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence            4678889998 66677778889999992   2  4455666666778999999999988888889999999998877655


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCC----CeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDS----SRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ...........+.+.++++.+++.    ..+    +.|.+||..++.....+........+..+.++|++..  +++...
T Consensus        81 ~~~~~~~~~~~i~~~~dg~l~v~~----~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l--~v~~~~  154 (333)
T 2dg1_A           81 PFVSHKANPAAIKIHKDGRLFVCY----LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF--YFTDFR  154 (333)
T ss_dssp             EEECSSSSEEEEEECTTSCEEEEE----CTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCE--EEEECC
T ss_pred             EeeCCCCCcceEEECCCCcEEEEe----CCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCE--EEEecc
Confidence            432333445566777777644443    344    6899999988765433332223346889999999863  444432


Q ss_pred             ------CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeecccccccCCeeeeeecccccc
Q psy6859         159 ------SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTD  231 (261)
Q Consensus       159 ------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  231 (261)
                            .+.|..+|.. .++. ..+. .....+..++|+|+++.| ++...++.|.+||+.+.....   ..+   ....
T Consensus       155 ~~~~~~~~~l~~~~~~-~~~~-~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~---~~~---~~~~  225 (333)
T 2dg1_A          155 GYSTNPLGGVYYVSPD-FRTV-TPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI---QPF---GATI  225 (333)
T ss_dssp             CBTTBCCEEEEEECTT-SCCE-EEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE---EEE---EEEE
T ss_pred             ccccCCCceEEEEeCC-CCEE-EEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc---ccc---cceE
Confidence                  2456666654 3333 3332 344567899999999866 455567899999985310000   000   0001


Q ss_pred             eeecCCCccceeeeeECCCCceEEEeec
Q psy6859         232 LFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       232 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ...+.++ ..+..++++++|+++++...
T Consensus       226 ~~~~~~~-~~~~~i~~d~~G~l~v~~~~  252 (333)
T 2dg1_A          226 PYYFTGH-EGPDSCCIDSDDNLYVAMYG  252 (333)
T ss_dssp             EEECCSS-SEEEEEEEBTTCCEEEEEET
T ss_pred             EEecCCC-CCCCceEECCCCCEEEEEcC
Confidence            1112222 46678999999987776543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.74  E-value=7.9e-16  Score=118.24  Aligned_cols=209  Identities=9%  Similarity=0.022  Sum_probs=133.6

Q ss_pred             CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe----------CCCcEEEEEccccceeeeeeccC---
Q psy6859          22 NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA----------SDKAMKVFDVINFDMINMIKLDF---   88 (261)
Q Consensus        22 ~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~v~~wd~~~~~~~~~~~~~~---   88 (261)
                      .|+.|.+||..+.  +.+..+..+..+  .++|+||+++++++.          .++.|.+||..+++.+..+....   
T Consensus        29 ~d~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~  104 (361)
T 2oiz_A           29 TESRVHVYDYTNG--KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV  104 (361)
T ss_dssp             GGCEEEEEETTTC--CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred             ccCeEEEEECCCC--eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence            4789999998876  566777766555  899999999999886          36689999999988888776431   


Q ss_pred             ---cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE-EeecCCcceEEEEEEeCCCCceEEEEecCC-----
Q psy6859          89 ---TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM-IKLDFTPLTVECIHYLGDAIPTAAVSDQDS-----  159 (261)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----  159 (261)
                         .....+.++++++++++...  +.++.|.+||+.+++.+.. +....    ...+.+.|++... +++.+.|     
T Consensus       105 ~~g~~p~~i~~spdg~~l~v~n~--~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~-~~~~~~dg~~~~  177 (361)
T 2oiz_A          105 QGLNYDGLFRQTTDGKFIVLQNA--SPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRS-FMTICGDGGLLT  177 (361)
T ss_dssp             CBCCCGGGEEECTTSSEEEEEEE--SSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSE-EEEEETTSSEEE
T ss_pred             ccCCCcceEEECCCCCEEEEECC--CCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCee-EEEECCCCcEEE
Confidence               22345778899988876511  2368999999999987766 43211    0112223332111 2222233     


Q ss_pred             -------------------------------------------CeEEEEEccCCCc--cceeecc-C----c----ccCe
Q psy6859         160 -------------------------------------------SHVHIYDCKGNGT--PLHVLDR-L----H----TKPV  185 (261)
Q Consensus       160 -------------------------------------------~~i~i~d~~~~~~--~~~~~~~-~----~----~~~v  185 (261)
                                                                 +.+.++|+. ...  .+..+.. .    .    ....
T Consensus       178 v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~p~g~  256 (361)
T 2oiz_A          178 INLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFS-GDEVKVDGPWSLLNDEDKAKNWVPGGY  256 (361)
T ss_dssp             EEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECS-SSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred             EEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEec-CCCceecccccccCccccccccccCCe
Confidence                                                       344444443 111  0111100 0    0    0111


Q ss_pred             EEEEEcCCCCEEEEEcC-----------CCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceE
Q psy6859         186 VLIKFNPIYQVVVSVDK-----------AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF  254 (261)
Q Consensus       186 ~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  254 (261)
                      ..++|+|+++.++++..           .+.|.+||+.               +.+.+..+..+.  +.+++|+|||++|
T Consensus       257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~---------------t~~~v~~i~~~~--p~~ia~spdg~~l  319 (361)
T 2oiz_A          257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK---------------TKQRVARIPGRD--ALSMTIDQQRNLM  319 (361)
T ss_dssp             SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT---------------TTEEEEEEECTT--CCEEEEETTTTEE
T ss_pred             eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC---------------CCcEEEEEecCC--eeEEEECCCCCEE
Confidence            12688999887765532           3479999984               467777777766  8999999999999


Q ss_pred             EEeec
Q psy6859         255 VTISM  259 (261)
Q Consensus       255 ~s~~~  259 (261)
                      ++++.
T Consensus       320 ~v~n~  324 (361)
T 2oiz_A          320 LTLDG  324 (361)
T ss_dssp             EEECS
T ss_pred             EEeCC
Confidence            88764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=5.7e-15  Score=109.88  Aligned_cols=196  Identities=12%  Similarity=0.167  Sum_probs=135.3

Q ss_pred             CCCCeEEEEEc-C-CCeEEEecC-CCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859           2 HRSPITHVVVT-K-TDFVITASN-DGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         2 H~~~v~~~~~~-~-~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      |...+.++++. + +.++++... ++.|.+|+.+.   +.+..+. .+...+.+++++++++++++...++.|.+||. +
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~  150 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG---QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-N  150 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS---CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC---cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-C
Confidence            44678899994 5 555555533 88999999543   3444443 23456899999999998888778899999996 4


Q ss_pred             cceeeeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          78 FDMINMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        78 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      ++.+..+..  .......+.+.++++.+++.    ..++.|.+||... +.+..+........+..+++++++.  ++++
T Consensus       151 g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~----~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~--l~v~  223 (286)
T 1q7f_A          151 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD----NRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGE--ILIA  223 (286)
T ss_dssp             SCEEEEEECTTTCSSEEEEEECSSSEEEEEE----GGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCC--EEEE
T ss_pred             CCEEEEeCCCCccCCcEEEEECCCCCEEEEE----CCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCC--EEEE
Confidence            565555542  22234556677766533332    5689999999754 4555554332224678999999985  3666


Q ss_pred             ecCCC-eEEEEEccCCCccceeeccCc--ccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         156 DQDSS-HVHIYDCKGNGTPLHVLDRLH--TKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       156 ~~~d~-~i~i~d~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      ...++ .|.+||.  .++.+..+. .+  ...+.+++++|+|+++++ +.|+.|++|++.
T Consensus       224 ~~~~~~~i~~~~~--~g~~~~~~~-~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          224 DNHNNFNLTIFTQ--DGQLISALE-SKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             ECSSSCEEEEECT--TSCEEEEEE-ESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             eCCCCEEEEEECC--CCCEEEEEc-ccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence            66665 9999995  566666665 33  234789999999987777 568999999974

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.73  E-value=1.1e-15  Score=127.23  Aligned_cols=230  Identities=8%  Similarity=-0.096  Sum_probs=147.8

Q ss_pred             CCCCCeEEEEEcC-CCeEE-----EecCCCeEEEEeccCCceeeeEEeeccccce--eEEEEeeCCCEEEEEeCCCc---
Q psy6859           1 MHRSPITHVVVTK-TDFVI-----TASNDGHIKFWKKQEEGIEFVKHFRSHLGVI--HSICTNYNGTLLCTVASDKA---   69 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~-----s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~dg~---   69 (261)
                      +|+..+..++||| +++||     .|+.+..|++||+.++  +.+.  ..+...+  ..++|+|||+.|+.++.|..   
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg--~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG--EWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC--CBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC--CCcC--CcccCcccccceEEecCCCEEEEEEecCCCCC
Confidence            3555789999999 88888     5566789999999987  3320  1121222  68899999999999988776   


Q ss_pred             ----------EEEEEccccce--eeeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC
Q psy6859          70 ----------MKVFDVINFDM--INMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT  135 (261)
Q Consensus        70 ----------v~~wd~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~  135 (261)
                                |++|++.+++.  ...+..  +........++++++.++.....+.....|.+||..+++. ..+.....
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~  272 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVG  272 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSS
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCC
Confidence                      99999987762  222222  2234556778899988776522211223677777655543 33333222


Q ss_pred             cceEEEEEEeCCCCceEEEEec---CCCeEEEEEccCCCcc--ceeeccCc-ccCeEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859         136 PLTVECIHYLGDAIPTAAVSDQ---DSSHVHIYDCKGNGTP--LHVLDRLH-TKPVVLIKFNPIYQVVVSVDKAGILEYW  209 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iw  209 (261)
                        ......+ +++. + ++...   .++.|.+||+. ++..  ...+...+ ...+..++|+ ++.++++...|+..++|
T Consensus       273 --~~~~~~~-~~g~-l-~~~s~~~~~~~~l~~~d~~-~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  345 (695)
T 2bkl_A          273 --AKYEVHA-WKDR-F-YVLTDEGAPRQRVFEVDPA-KPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR  345 (695)
T ss_dssp             --CCEEEEE-ETTE-E-EEEECTTCTTCEEEEEBTT-BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             --ceEEEEe-cCCc-E-EEEECCCCCCCEEEEEeCC-CCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence              2333444 5555 3 44333   36889999997 5543  23332122 4567888888 67788888999998888


Q ss_pred             ecccccccCCeeeeeecccccceeecCCC-ccceeeeeECCCCceEEE
Q psy6859         210 SGYKQEFKFPKCVHFESKLDTDLFEFAKN-KTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s  256 (261)
                      .+..              .++....+..+ ...+..+.++|+++.|+.
T Consensus       346 ~~~~--------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~  379 (695)
T 2bkl_A          346 VATL--------------KGKPVRTVQLPGVGAASNLMGLEDLDDAYY  379 (695)
T ss_dssp             EEET--------------TCCEEEECCCSSSSEECCCBSCTTCSEEEE
T ss_pred             EEeC--------------CCCeeEEecCCCCeEEEEeecCCCCCEEEE
Confidence            7641              13344445544 667888999999877663

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.70  E-value=9.4e-15  Score=111.64  Aligned_cols=215  Identities=9%  Similarity=0.061  Sum_probs=137.7

Q ss_pred             CeEEEEEcCCCeEEEe---------cCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC---C--cE
Q psy6859           5 PITHVVVTKTDFVITA---------SNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD---K--AM   70 (261)
Q Consensus         5 ~v~~~~~~~~~~l~s~---------~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g--~v   70 (261)
                      .+..+++ .|+.++..         ..++.|.+|++.++.  . ..+    ..+..++|+|||++|+.++.+   +  .|
T Consensus        16 ~~~~~~~-dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~--~-~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           16 YLSDPRT-KGELVAYVLTKANLKDNKYENTIVIENLKNNA--R-RFI----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             EEEEEEE-ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC--E-EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EcccceE-CCcEEEEEEeecCcccCCccceEEEEeCCCCc--e-EEc----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            4566667 66665543         226788999988763  2 222    457889999999999987754   3  37


Q ss_pred             EEEEccccceeeeeeccCcceeEEEEeecCCceeeeeee------------------c-----CCCCeEEEEEcCCCcee
Q psy6859          71 KVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVS------------------D-----QDSSRVHIYDCKGNDMI  127 (261)
Q Consensus        71 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------------------~-----~~d~~i~i~d~~~~~~~  127 (261)
                      .+|++.+++.......+.  .....++++++.++.....                  +     .....|.+||+.+++.+
T Consensus        88 ~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           88 WVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            788888776655444333  5667788888877765210                  0     01357999999988764


Q ss_pred             eEEeecCCcceEEEEEEeCCCCceEEEEecCC------C-eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE
Q psy6859         128 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS------S-HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV  200 (261)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~-~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  200 (261)
                      ..+..   + .+..+.|+|++  . ++++..+      . ...+|.+. +++. ..+. .+ ..+..+  +|+|++|+..
T Consensus       166 ~~l~~---~-~~~~~~~spdg--~-~~~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~-~~-~~~~~~--spdg~~l~~~  232 (347)
T 2gop_A          166 EEFEK---P-RFSSGIWHRDK--I-VVNVPHREIIPQYFKFWDIYIWE-DGKE-EKMF-EK-VSFYAV--DSDGERILLY  232 (347)
T ss_dssp             EEEEE---E-TTCEEEEETTE--E-EEEEECCCSSCCSSCCEEEEEEE-TTEE-EEEE-EE-ESEEEE--EECSSCEEEE
T ss_pred             eeecC---C-CcccccCCCCe--E-EEEEecccccccccccccEEEeC-CCce-EEec-cC-cceeeE--CCCCCEEEEE
Confidence            55543   2 56788999999  2 4444333      2 44566555 4443 3443 34 555554  9999988776


Q ss_pred             cCC--------CeEEEeecccccccCCeeeeeecccccceeecCCCccceee-eeECCCCceEEEeecCC
Q psy6859         201 DKA--------GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSG-LSFSPDGNKFVTISMDR  261 (261)
Q Consensus       201 ~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~Dg  261 (261)
                      +.+        ..|.+||  +               ++.......+...+.. +.|+ |+ ++++++.|+
T Consensus       233 ~~~~~~~~~~~~~l~~~d--~---------------~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          233 GKPEKKYMSEHNKLYIYD--G---------------KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             ECCSSSCCCSSCEEEEEC--S---------------SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             EccccCCccccceEEEEC--C---------------CceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            643        3577777  2               2333334456677876 8999 88 888877764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.70  E-value=1.5e-13  Score=103.44  Aligned_cols=228  Identities=14%  Similarity=0.093  Sum_probs=144.5

Q ss_pred             CeEEEEEcC-CCeEEE-------ecCCCeEEEEeccCCceeeeEE--eeccccceeEEEEeeC-CCEEEEEeCCCcEEEE
Q psy6859           5 PITHVVVTK-TDFVIT-------ASNDGHIKFWKKQEEGIEFVKH--FRSHLGVIHSICTNYN-GTLLCTVASDKAMKVF   73 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s-------~~~d~~i~iw~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~w   73 (261)
                      ...+++|++ +.++++       +..++.|.+|+..++.......  ..++...+.+++++++ ++++++. ..+.|.+|
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~   97 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEE
Confidence            457899998 777777       5778999999987653222111  0124467899999999 7655544 44478999


Q ss_pred             Eccccceeee-eec----cCcceeEEEEeecCCceeeeeeecCCC---------------CeEEEEEcCCCceeeEEeec
Q psy6859          74 DVINFDMINM-IKL----DFTPLTVECIHYLGDAIPTAAVSDQDS---------------SRVHIYDCKGNDMINMIKLD  133 (261)
Q Consensus        74 d~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~d---------------~~i~i~d~~~~~~~~~~~~~  133 (261)
                      |.. ++.... ...    .......+.+.+++...++.    ..+               +.|..||.. ++........
T Consensus        98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~  171 (314)
T 1pjx_A           98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA----PAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF  171 (314)
T ss_dssp             ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE----CBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE
T ss_pred             eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEe----cCcccccccccccccCCCCeEEEECCC-CCEEEeccCC
Confidence            987 665433 221    11223455666666543332    222               567777765 4443332211


Q ss_pred             CCcceEEEEEEe----CCCCceEEEEecCCCeEEEEEccCCCc-----cceeeccCcc-cCeEEEEEcCCCCEEEEEcCC
Q psy6859         134 FTPLTVECIHYL----GDAIPTAAVSDQDSSHVHIYDCKGNGT-----PLHVLDRLHT-KPVVLIKFNPIYQVVVSVDKA  203 (261)
Q Consensus       134 ~~~~~~~~~~~~----~~~~~~~~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d  203 (261)
                         .....++++    |++.. ++++...++.|.+||....++     ....+. .+. ..+..++++++|+++++...+
T Consensus       172 ---~~~~~i~~~~~~d~dg~~-l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~~~  246 (314)
T 1pjx_A          172 ---QFPNGIAVRHMNDGRPYQ-LIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             ---SSEEEEEEEECTTSCEEE-EEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             ---CCcceEEEecccCCCCCE-EEEEECCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECCCCCEEEEEcCC
Confidence               234678888    88753 355666689999999862232     222332 333 567889999999988877778


Q ss_pred             CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         204 GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       204 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      +.|.+||.++               ++.+..+..+...+.+++|+|+|+.|+.++.
T Consensus       247 ~~i~~~d~~~---------------g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          247 SHIEVFGPDG---------------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             TEEEEECTTC---------------BSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CEEEEEcCCC---------------CcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence            8999999753               3344444455578899999999996655543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=1.3e-12  Score=97.40  Aligned_cols=225  Identities=10%  Similarity=-0.018  Sum_probs=148.4

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ...+.++++.+ ++++++...++.|.+|+.. +... ...+..+...+.+++++++++++++...++.|..||.. ++. 
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-   89 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-   89 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-
Confidence            46789999999 7777766668999999987 4211 11222344678999999999888887778899999975 332 


Q ss_pred             eeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          82 NMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        82 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ..+..  .......+.+.+++...++.    ..++.|..||. +++.. .+........+..+.+.+++.  ++++...+
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~  161 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTE----MNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNA--LWFTENQN  161 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEE----TTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSC--EEEEETTT
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEe----cCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCC--EEEEeCCC
Confidence            23332  22233445555555433333    56789999998 44433 232222334678899999885  35666667


Q ss_pred             CeEEEEEccCCCcccee-eccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC
Q psy6859         160 SHVHIYDCKGNGTPLHV-LDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN  238 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (261)
                      +.|..||.  +++.... +. .....+..++++++|++.++...++.|.+||. ++..             . ......+
T Consensus       162 ~~i~~~~~--~g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-------------~-~~~~~~~  223 (299)
T 2z2n_A          162 NAIGRITE--SGDITEFKIP-TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-------------T-EFKIPTP  223 (299)
T ss_dssp             TEEEEECT--TCCEEEEECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-------------E-EEECSST
T ss_pred             CEEEEEcC--CCcEEEeeCC-CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-------------E-EEECCCC
Confidence            89999997  3333322 22 34566889999999997777777889999997 3211             0 1112334


Q ss_pred             ccceeeeeECCCCceEEEe
Q psy6859         239 KTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       239 ~~~v~~~~~s~~~~~l~s~  257 (261)
                      ...+.+++++++|+++++.
T Consensus       224 ~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          224 NARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             TCCEEEEEECSTTCEEEEE
T ss_pred             CCCceeEEECCCCCEEEec
Confidence            5678899999999866654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=1.5e-13  Score=110.98  Aligned_cols=190  Identities=10%  Similarity=0.019  Sum_probs=142.9

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc--ccceeeeeeccCcce
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI--NFDMINMIKLDFTPL   91 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~--~~~~~~~~~~~~~~~   91 (261)
                      +.++++...++.|.++|..+.  +.+..+... ..+..+.|+||++++++++.|+.|.+||+.  +++.+.++.....+ 
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~--~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P-  242 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTY--EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA-  242 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTC--CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE-
T ss_pred             ceEEEEeCCCCeEEEEECCCC--eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC-
Confidence            346778888999999999987  667676633 356789999999999999999999999996  77888887765554 


Q ss_pred             eEEEEe----ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC--------C-cceEEEEEEeCCCCceEEEEecC
Q psy6859          92 TVECIH----YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF--------T-PLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        92 ~~~~~~----~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ..+.++    ++++++++.   ...++.+.++|..+.+.+..+....        + ...+..+..++++.. +++....
T Consensus       243 ~~ia~s~~~~pDGk~l~v~---n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~-~vv~~~~  318 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAG---AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE-FIVNVKE  318 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEE---EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE-EEEEETT
T ss_pred             ceeEEccccCCCCCEEEEE---EccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE-EEEEecC
Confidence            455667    588877665   2457999999999999888776431        1 125677888887664 4566677


Q ss_pred             CCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccc
Q psy6859         159 SSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQ  214 (261)
Q Consensus       159 d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~  214 (261)
                      .|.|.++|.. ..+.  +..+  ........+.|+|++++++++. .++.|.++|+.++
T Consensus       319 ~g~v~~vd~~-~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          319 TGKILLVDYT-DLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             TTEEEEEETT-CSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             CCeEEEEecC-CCccceeeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            8999999987 4332  2233  2445677899999999876554 6788999999653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.66  E-value=2.4e-12  Score=96.07  Aligned_cols=227  Identities=8%  Similarity=-0.018  Sum_probs=148.6

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ...+.++++.+ +.++++...++.|..|+.+..  .....+......+..+++.++++++++...++.|..||. +++..
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGI--IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCCc--EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            35688999998 777777777889999997632  212222224456889999999988887777889999998 55443


Q ss_pred             eee-eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          82 NMI-KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ... .........+.+.+++...++.    ..++.|..||. +++... +........+..+.+++++.  ++++...++
T Consensus       133 ~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~  204 (299)
T 2z2n_A          133 EYELPNKGSYPSFITLGSDNALWFTE----NQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDA--LWFVEIIGN  204 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEE----TTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSS--EEEEETTTT
T ss_pred             EecCCCCCCCCceEEEcCCCCEEEEe----CCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCC--EEEEccCCc
Confidence            221 1122234455556565433332    56789999998 555433 32222334578899999886  366665678


Q ss_pred             eEEEEEccCCCccce-eeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         161 HVHIYDCKGNGTPLH-VLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      .|..||..  ++... ... .+...+.+++++++|++.++...++.|..||.. +.              .....+..+.
T Consensus       205 ~i~~~~~~--g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~--------------~~~~~~~~~~  266 (299)
T 2z2n_A          205 KIGRITTS--GEITEFKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI--------------IEEYPIQIKS  266 (299)
T ss_dssp             EEEEECTT--CCEEEEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE--------------EEEEECSSSS
T ss_pred             eEEEECCC--CcEEEEECC-CCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc--------------eEEEeCCCCC
Confidence            99999983  33222 222 345678999999999977776678889999973 10              0011123345


Q ss_pred             cceeeeeECCCCceEEEeec
Q psy6859         240 TYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ..+.++++ ++|++.++.+.
T Consensus       267 ~~~~~i~~-~~g~l~v~~~~  285 (299)
T 2z2n_A          267 AEPHGICF-DGETIWFAMEC  285 (299)
T ss_dssp             CCEEEEEE-CSSCEEEEETT
T ss_pred             CccceEEe-cCCCEEEEecC
Confidence            67889999 88887776543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.66  E-value=1.4e-14  Score=110.84  Aligned_cols=172  Identities=8%  Similarity=0.104  Sum_probs=123.0

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCc---------eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEG---------IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      +++.+++++ ..++++|+.+ .+++|+++...         .+..... .+.+ |+.++|  |+++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            588999999 8889999887 45569876431         1222233 3566 999999  88899998 889999999


Q ss_pred             ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      +.+............+..  .+.+....++.+    +.||.+.+||+.++.... +     ...+.+++|+|++    ++
T Consensus       113 v~sl~~~~~~~~~~~~v~--~i~~~~p~~av~----~~dG~L~v~dl~~~~~~~-~-----~~~Vs~v~WSpkG----~~  176 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVF--QLKNVNNTLVIL----NSVNDLSALDLRTKSTKQ-L-----AQNVTSFDVTNSQ----LA  176 (388)
T ss_dssp             SSSTTCEEEEEECSSCEE--EEEECSSEEEEE----ETTSEEEEEETTTCCEEE-E-----EESEEEEEECSSE----EE
T ss_pred             chhhhccCccceeeccee--eEEecCCCEEEE----ECCCCEEEEEccCCcccc-c-----cCCceEEEEcCCc----eE
Confidence            987654444433333332  333333334444    799999999999887643 1     2378999999999    45


Q ss_pred             EecCCCeEEEEEccCCCcc--ceeec--------cCcccCeEEEEEcCCCCEEEE
Q psy6859         155 SDQDSSHVHIYDCKGNGTP--LHVLD--------RLHTKPVVLIKFNPIYQVVVS  199 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~--~~~~~--------~~~~~~v~~~~~~~~~~~l~~  199 (261)
                      .|..||++++|+.. ....  .+++.        .+|...|.+|.|.++++++++
T Consensus       177 vg~~dg~i~~~~~~-~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          177 VLLKDRSFQSFAWR-NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEETTSCEEEEEEE-TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEcCCcEEEEcCC-CccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            67779999999887 5553  45552        036788999999999998876

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=5.2e-13  Score=107.87  Aligned_cols=236  Identities=9%  Similarity=0.049  Sum_probs=154.2

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEecc--CCceeeeEEeeccccceeEEEEe----eCCCEEEEEeC-CCcEEEEEcc
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQ--EEGIEFVKHFRSHLGVIHSICTN----YNGTLLCTVAS-DKAMKVFDVI   76 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~~~-dg~v~~wd~~   76 (261)
                      .+..+.|+| ++++++++.|+.|.+||+.  +.  +.+..+.... ....++|+    |||++++++.. ++++.++|..
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~--~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--TTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  274 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--CEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCC--cEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence            466899999 8999999999999999996  44  5666666443 35799999    69999888775 5899999999


Q ss_pred             ccceeeeeeccC----------c-ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEe
Q psy6859          77 NFDMINMIKLDF----------T-PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYL  145 (261)
Q Consensus        77 ~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (261)
                      +.+.+..+....          . ....+..++.+..++   ++-..+|.|.++|....+.+...... .......+.|+
T Consensus       275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v---v~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~  350 (567)
T 1qks_A          275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI---VNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLD  350 (567)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE---EEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEEC
T ss_pred             CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE---EEecCCCeEEEEecCCCccceeeeee-ccccccCceEC
Confidence            998888766422          1 122333344333222   12267899999998876543333222 12245688999


Q ss_pred             CCCCceEEEEecCCCeEEEEEccCCCccceeecc----CcccCeEEEEEcCCCC-EEEEEc-CCCeEEEeecccccccCC
Q psy6859         146 GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR----LHTKPVVLIKFNPIYQ-VVVSVD-KAGILEYWSGYKQEFKFP  219 (261)
Q Consensus       146 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~  219 (261)
                      |++.++ +++...++.|.++|+. +++.+..+..    .|...-..+ ++|++. ..+++. .++.|.++|..+.+..  
T Consensus       351 pdgr~~-~va~~~sn~V~ViD~~-t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~--  425 (567)
T 1qks_A          351 GSHRYF-ITAANARNKLVVIDTK-EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP--  425 (567)
T ss_dssp             TTSCEE-EEEEGGGTEEEEEETT-TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT--
T ss_pred             CCCCEE-EEEeCCCCeEEEEECC-CCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc--
Confidence            999974 4555568899999999 8887766651    232212122 688755 445543 5689999998642100  


Q ss_pred             eeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         220 KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                            ....+.++++......-..+..+|++++|.+..
T Consensus       426 ------~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          426 ------DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             ------TTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             ------cccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence                  001334455554333334577899999887754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.66  E-value=9.1e-13  Score=98.54  Aligned_cols=226  Identities=8%  Similarity=0.048  Sum_probs=144.9

Q ss_pred             EEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859           7 THVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         7 ~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      -+..|+|  +.++++...++.|..|+..+..  . ..+. ....+.+++++++++++++ . ++.|.+||..+++.....
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~--~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ--V-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTCC--E-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCCc--E-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence            4678888  4567777788999999998752  2 2232 3467899999999995554 3 568999999877654332


Q ss_pred             ecc----CcceeEEEEeecCCceeeeeeecC------CCCeEEEEEcCC-CceeeEEeecCCcceEEEEEEeCCCCceEE
Q psy6859          85 KLD----FTPLTVECIHYLGDAIPTAAVSDQ------DSSRVHIYDCKG-NDMINMIKLDFTPLTVECIHYLGDAIPTAA  153 (261)
Q Consensus        85 ~~~----~~~~~~~~~~~~~~~~~~~~~s~~------~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (261)
                      ...    ........+.++++..++. ....      ....-.+|.+.. ++.......   ......++|+|++.. ++
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---~~~pngi~~spdg~~-ly  164 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---VDISNGLDWSLDHKI-FY  164 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---ESBEEEEEECTTSCE-EE
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECCCCEEEEeec---cccccceEEcCCCCE-EE
Confidence            221    1223445566676633322 1110      012334444432 332222221   124578999999975 35


Q ss_pred             EEecCCCeEEEEEcc-CCCcc-----ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecc
Q psy6859         154 VSDQDSSHVHIYDCK-GNGTP-----LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESK  227 (261)
Q Consensus       154 ~~~~~d~~i~i~d~~-~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  227 (261)
                      ++.+.++.|.+||+. .++..     +..+. .....+..++++++|++.++....+.|..||..               
T Consensus       165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~---------------  228 (297)
T 3g4e_A          165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV---------------  228 (297)
T ss_dssp             EEEGGGTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT---------------
T ss_pred             EecCCCCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC---------------
Confidence            667778999999973 24432     22232 334567899999999877777778889999984               


Q ss_pred             cccceeecCCCccceeeeeEC-CCCceEEEeec
Q psy6859         228 LDTDLFEFAKNKTYPSGLSFS-PDGNKFVTISM  259 (261)
Q Consensus       228 ~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~  259 (261)
                      +++.+..+..+...+++++|. |+++.|..++.
T Consensus       229 tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          229 TGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            356667776666789999998 88887665543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.66  E-value=7.7e-13  Score=103.19  Aligned_cols=241  Identities=7%  Similarity=-0.046  Sum_probs=148.1

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC--cEEEEEccccce
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK--AMKVFDVINFDM   80 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~v~~wd~~~~~~   80 (261)
                      .....|+|++ ++++++...++.|++|+.+++  ......... .... ++|+++++.|+++..++  .|.+++...+..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--KVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTT--EEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCC--EEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            3567899999 777777778899999999876  443333332 2334 99999999999888766  788888776554


Q ss_pred             eeee----eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe--ecCCcceE-E-EEEEeCCCCceE
Q psy6859          81 INMI----KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK--LDFTPLTV-E-CIHYLGDAIPTA  152 (261)
Q Consensus        81 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~-~-~~~~~~~~~~~~  152 (261)
                      ...+    .........+.+.+.+..++..    ..++.|..||..++.......  .......- . .++++|++.. +
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~----d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~-l  281 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFV----DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN-F  281 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEE----CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE-E
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEE----ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE-E
Confidence            3333    1122233456677745555554    568899999998775322200  11111111 2 8999996443 4


Q ss_pred             EEEecCCCeEEEEEccCCCccceeeccCc---------------ccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLDRLH---------------TKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEF  216 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~  216 (261)
                      +++...++.|+.|+.. . . +..+. ++               -.....++++|+|+++++-. .++.|+.|++.++..
T Consensus       282 yv~d~~~~~I~~~~~~-g-~-~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          282 YMSDQNLSSVYKITPD-G-E-CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EEEETTTTEEEEECTT-C-C-EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             EEEeCCCCEEEEEecC-C-C-EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence            6777778999999975 2 2 22222 22               23478999999999777777 889999999654321


Q ss_pred             cCCeeeeeecccccce-eecCCCccceeeeeECCCCceEEEeec
Q psy6859         217 KFPKCVHFESKLDTDL-FEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       217 ~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ..-....  ...+..- ......-..+..++++|+|.++++-..
T Consensus       358 ~~~~g~~--~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~  399 (409)
T 3hrp_A          358 STVAGQV--DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW  399 (409)
T ss_dssp             EEEEECT--TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred             EEEeCCC--CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence            1000000  0000000 000011246789999999877766543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.64  E-value=2.3e-13  Score=103.18  Aligned_cols=209  Identities=11%  Similarity=0.045  Sum_probs=140.3

Q ss_pred             cCCCeEEEEeccCCceeeeEEee------ccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEE
Q psy6859          21 SNDGHIKFWKKQEEGIEFVKHFR------SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVE   94 (261)
Q Consensus        21 ~~d~~i~iw~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~   94 (261)
                      +.+++|.++|.+++  +....+.      ........+.+. +++.+++...++.|.+||..+++.+.++.....+ ..+
T Consensus        14 ~~~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p-~~i   89 (328)
T 3dsm_A           14 YSNATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSP-RYI   89 (328)
T ss_dssp             SCCBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSE-EEE
T ss_pred             CCCceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCC-cEE
Confidence            45899999999986  4443331      111335677774 4556666667899999999999998887644333 445


Q ss_pred             EEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC---cceEEEEEEeCCCCceEEEEec-CCCeEEEEEccCC
Q psy6859          95 CIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT---PLTVECIHYLGDAIPTAAVSDQ-DSSHVHIYDCKGN  170 (261)
Q Consensus        95 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~  170 (261)
                      .+++++ .++..   ...++.|.+||+.+++....+.....   ......+.+. ++ . ++++.. .++.|.++|.. +
T Consensus        90 ~~~~~g-~lyv~---~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~-~~-~-lyv~~~~~~~~v~viD~~-t  161 (328)
T 3dsm_A           90 HFLSDE-KAYVT---QIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY-GK-Y-VYVNCWSYQNRILKIDTE-T  161 (328)
T ss_dssp             EEEETT-EEEEE---EBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE-TT-E-EEEEECTTCCEEEEEETT-T
T ss_pred             EEeCCC-eEEEE---ECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE-CC-E-EEEEcCCCCCEEEEEECC-C
Confidence            565666 44443   13689999999999988877775440   0022345552 33 2 345544 48899999998 8


Q ss_pred             CccceeeccCcccCeEEEEEcCCCCEEEEEcCC----------CeEEEeecccccccCCeeeeeecccccceeecCCC-c
Q psy6859         171 GTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA----------GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN-K  239 (261)
Q Consensus       171 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  239 (261)
                      ++.+..+. . ......++++|+|++++++..+          +.|.++|..+               .+....+... .
T Consensus       162 ~~~~~~i~-~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t---------------~~v~~~~~~~~g  224 (328)
T 3dsm_A          162 DKVVDELT-I-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET---------------FTVEKQFKFKLG  224 (328)
T ss_dssp             TEEEEEEE-C-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT---------------TEEEEEEECCTT
T ss_pred             CeEEEEEE-c-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC---------------CeEEEEEecCCC
Confidence            88888775 3 3445789999999977776654          7899999854               3333333321 2


Q ss_pred             cceeeeeECCCCceEEEee
Q psy6859         240 TYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~  258 (261)
                      ..+..++|+|++++|.++.
T Consensus       225 ~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          225 DWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             CCCEEEEECTTSCEEEEES
T ss_pred             CCceeEEEecCCCEEEEEc
Confidence            3678999999999887653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.63  E-value=3.1e-13  Score=112.94  Aligned_cols=196  Identities=7%  Similarity=-0.094  Sum_probs=129.3

Q ss_pred             cccceeEEEEeeCCCEEEEEeCCC-----cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC-----
Q psy6859          45 HLGVIHSICTNYNGTLLCTVASDK-----AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS-----  114 (261)
Q Consensus        45 ~~~~v~~~~~~~~~~~l~s~~~dg-----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~-----  114 (261)
                      |...+..++|+|||++|+.+..++     .|++||+.+++...... .........++++++.++..    +.++     
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~~~~~~wspDg~~l~~~----~~~~~~~~~  197 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYN----AYPQQDGKS  197 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEE----ECCCCSSCC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcccceEEEEeCCCEEEEE----EECCccccc
Confidence            444688999999999998776543     89999999988765322 11223457788899887766    3333     


Q ss_pred             -----------eEEEEEcCCCcee--eEEeecCCcceEEEEEEeCCCCceEEEEecC---CCeEEEEEccCC------Cc
Q psy6859         115 -----------RVHIYDCKGNDMI--NMIKLDFTPLTVECIHYLGDAIPTAAVSDQD---SSHVHIYDCKGN------GT  172 (261)
Q Consensus       115 -----------~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~------~~  172 (261)
                                 .|.+|++.+++..  ..+....++.....+.++|++.++++.+...   +..|++||+. +      +.
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~  276 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ-QESNGITGI  276 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG-GSSSSSCSS
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc-ccccccCCc
Confidence                       3999999887633  2233333345678899999999754444311   5789999997 4      32


Q ss_pred             -cceeeccCcccCeEEEEEcCCCCEEEEEcC----CCeEEEeecccccccCCeeeeeecccccceeecCCCcc--ceeee
Q psy6859         173 -PLHVLDRLHTKPVVLIKFNPIYQVVVSVDK----AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT--YPSGL  245 (261)
Q Consensus       173 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~  245 (261)
                       ....+. .+...+.. .|+|+|+.|+..+.    .+.|.+||+.+..             ......+..|..  .+..+
T Consensus       277 ~~~~~l~-~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------------~~~~~~l~~~~~~~~~~~~  341 (710)
T 2xdw_A          277 LKWVKLI-DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE-------------ESKWKVLVPEHEKDVLEWV  341 (710)
T ss_dssp             CCCEEEE-CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC-------------GGGCEEEECCCSSCEEEEE
T ss_pred             cceEEee-CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC-------------cccceeccCCCCCCeEEEE
Confidence             455565 55555554 48899987765543    3368999985421             011233333433  67888


Q ss_pred             eECCCCceEEEeecCC
Q psy6859         246 SFSPDGNKFVTISMDR  261 (261)
Q Consensus       246 ~~s~~~~~l~s~~~Dg  261 (261)
                      +|++++.++++...|+
T Consensus       342 ~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          342 ACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             EEETTTEEEEEEEETT
T ss_pred             EEEcCCEEEEEEEECC
Confidence            9998878888777664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.62  E-value=3.4e-13  Score=99.27  Aligned_cols=196  Identities=9%  Similarity=0.020  Sum_probs=132.6

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ..+.++++.+ ++++++.. ++.|.+|+....  .. ..+. .....+..++++++++++++...++.|.+|+..+....
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~--~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~  142 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN--NQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT  142 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCS--CC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCc--eE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE
Confidence            4577899998 77666655 889999998764  22 2222 22356789999999988887777889999976554433


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      ............+.+.+++...++.    ..++.|.+||..+.........  ....+..+++++++.  ++++...++.
T Consensus       143 ~~~~~~~~~p~~i~~~~~g~l~v~~----~~~~~i~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~--l~v~~~~~~~  214 (270)
T 1rwi_B          143 VLPFTGLNDPDGVAVDNSGNVYVTD----TDNNRVVKLEAESNNQVVLPFT--DITAPWGIAVDEAGT--VYVTEHNTNQ  214 (270)
T ss_dssp             ECCCCSCCSCCCEEECTTCCEEEEE----GGGTEEEEECTTTCCEEECCCS--SCCSEEEEEECTTCC--EEEEETTTSC
T ss_pred             eeccccCCCceeEEEeCCCCEEEEE----CCCCEEEEEecCCCceEeeccc--CCCCceEEEECCCCC--EEEEECCCCc
Confidence            2222222233456666666533332    4578999999887654332211  124578899999984  3666666889


Q ss_pred             EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      |.+||.. .... ......+...+.+++++|+|+++++...++.|+++++..
T Consensus       215 v~~~~~~-~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          215 VVKLLAG-STTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             EEEECTT-CSCC-EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             EEEEcCC-CCcc-eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            9999986 4333 223212335789999999999888888999999999854

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=2.5e-11  Score=90.54  Aligned_cols=223  Identities=9%  Similarity=-0.027  Sum_probs=147.5

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      ..+.++++.+ ++++++...++.|.+|+.. +.... ..+..+...+..+++.++++++++...++.|..+|.. ++.. 
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-   95 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-   95 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-
Confidence            4678999998 7777777778999999987 42221 2233334678899999999888877668889999987 5543 


Q ss_pred             eeecc--CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          83 MIKLD--FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        83 ~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      .+...  ......+.+.+++...++.    ..++.|..+|.. ++.. .+........+..+.+.+++.  ++++...++
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~l~v~~----~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~  167 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGDIWFTQ----LNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNA--LWFTENQNN  167 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEE----TTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSS--EEEEETTTT
T ss_pred             EecCCCCCCCCccceECCCCCEEEEc----cCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCC--EEEEecCCC
Confidence            33322  2334455555555543333    557889999987 5433 333332334678899999886  366666678


Q ss_pred             eEEEEEccCCCccce-eeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccce-eecCCC
Q psy6859         161 HVHIYDCKGNGTPLH-VLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL-FEFAKN  238 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  238 (261)
                      .|..||..  ++... ... .....+..++++++|++.++....+.|.+||.. +               +.. ..+..+
T Consensus       168 ~i~~~~~~--g~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g---------------~~~~~~~~~~  228 (300)
T 2qc5_A          168 SIGRITNT--GKLEEYPLP-TNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-G---------------EISEYDIPTP  228 (300)
T ss_dssp             EEEEECTT--CCEEEEECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C---------------CEEEEECSST
T ss_pred             eEEEECCC--CcEEEeeCC-CCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-C---------------cEEEEECCCC
Confidence            89999974  33322 222 344568999999999877777777889999972 1               111 112234


Q ss_pred             ccceeeeeECCCCceEEEe
Q psy6859         239 KTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       239 ~~~v~~~~~s~~~~~l~s~  257 (261)
                      ...+.+++++++|++.++.
T Consensus       229 ~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          229 NARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEE
T ss_pred             CCCceEEEECCCCCEEEec
Confidence            4567889999998866654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.61  E-value=3.3e-13  Score=113.26  Aligned_cols=229  Identities=9%  Similarity=-0.062  Sum_probs=143.6

Q ss_pred             CCeEEEEEcC-CCeEEEecCC-----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCc--------
Q psy6859           4 SPITHVVVTK-TDFVITASND-----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKA--------   69 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~--------   69 (261)
                      ..+..++||| +++|+.++.+     ..|++||+.++.  .+.. ..+...+..++|+|| +.|+.++.++.        
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~--~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK--PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC--EEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--CCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            3678899999 8888876543     469999999873  3322 112223468899999 88888876654        


Q ss_pred             ------EEEEEccccce--eeeeeccCc--ceeEEEEeecCCceeeeeeec-CCCCeEEEEEcCCC--ceeeEEeecCCc
Q psy6859          70 ------MKVFDVINFDM--INMIKLDFT--PLTVECIHYLGDAIPTAAVSD-QDSSRVHIYDCKGN--DMINMIKLDFTP  136 (261)
Q Consensus        70 ------v~~wd~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~-~~d~~i~i~d~~~~--~~~~~~~~~~~~  136 (261)
                            |++|++.+++.  ...+.....  ......++++++.++.....+ .....|.+||+.++  +....+..... 
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-  317 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK-  317 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS-
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC-
Confidence                  88999877652  222222222  245667888888777652221 13568999999876  31344433322 


Q ss_pred             ceEEEEEEeCCCCceEEEEec--CCCeEEEEEccCCC--ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         137 LTVECIHYLGDAIPTAAVSDQ--DSSHVHIYDCKGNG--TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                       ..... +.|++..+++.+..  .++.|.+||+. ++  .....+. .+...+..+.++ ++.++++...|+..+||.+.
T Consensus       318 -~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~-~~~~~~~~l~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          318 -AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS-GSTPRFDTVVP-ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             -SCEEE-EEEETTEEEEEECTTCTTCEEEEEECS-SSSCEEEEEEC-CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             -ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC-CCccccEEEec-CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence             12222 24777764444321  24569999987 53  2333343 455557778887 56677888889988888663


Q ss_pred             cccccCCeeeeeecccccceeecCC-CccceeeeeECCCCceEEE
Q psy6859         213 KQEFKFPKCVHFESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s  256 (261)
                      .              .++....+.. ....+..+.++|+++.|+.
T Consensus       393 ~--------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~  423 (741)
T 1yr2_A          393 L--------------DGKPAGAVSLPGIGSASGLSGRPGDRHAYL  423 (741)
T ss_dssp             T--------------TSCEEEECBCSSSCEEEEEECCBTCSCEEE
T ss_pred             C--------------CCCceeeccCCCCeEEEEeecCCCCCEEEE
Confidence            1              1333444443 3567888999999886663

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.60  E-value=1.1e-11  Score=93.99  Aligned_cols=223  Identities=7%  Similarity=-0.046  Sum_probs=139.8

Q ss_pred             eEEEEEcC-C-CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859           6 ITHVVVTK-T-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM   83 (261)
Q Consensus         6 v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~   83 (261)
                      ..+.+|+| + .++++...++.|..|+.+++  +. ..+. ....+.+++|+++++++++. .+ .|.+||..+++....
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~--~~-~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASG--RK-TVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH  124 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTT--EE-EEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCC--cE-EEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence            35678998 4 46667777899999998875  22 2232 34678999999999877754 44 499999887765432


Q ss_pred             eecc----CcceeEEEEeecCCceeeeeeec---CCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859          84 IKLD----FTPLTVECIHYLGDAIPTAAVSD---QDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus        84 ~~~~----~~~~~~~~~~~~~~~~~~~~~s~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                      ....    ........+.++++..++. ...   ...+.|..++  +++.......   ......++|+|++.. ++++.
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~-~~~~~~~~~~~l~~~~--~g~~~~~~~~---~~~~~~i~~s~dg~~-lyv~~  197 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGT-MGRKAETGAGSIYHVA--KGKVTKLFAD---ISIPNSICFSPDGTT-GYFVD  197 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEE-EETTCCTTCEEEEEEE--TTEEEEEEEE---ESSEEEEEECTTSCE-EEEEE
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEe-CCCcCCCCceEEEEEe--CCcEEEeeCC---CcccCCeEEcCCCCE-EEEEE
Confidence            2211    1223455666666533322 100   0124566666  4443322221   123568899999975 34566


Q ss_pred             cCCCeEEEEEcc-CCC-cc-----ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccc
Q psy6859         157 QDSSHVHIYDCK-GNG-TP-----LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLD  229 (261)
Q Consensus       157 ~~d~~i~i~d~~-~~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  229 (261)
                      +.++.|.+||+. .++ ..     +..+. .....+..++++++|.+.++...++.|..||..                +
T Consensus       198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~----------------g  260 (326)
T 2ghs_A          198 TKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD----------------G  260 (326)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTEEEEECTT----------------C
T ss_pred             CCCCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC----------------C
Confidence            667899999984 133 21     22222 234557889999999877766667889999873                3


Q ss_pred             cceeecCCCccceeeeeEC-CCCceEEEee
Q psy6859         230 TDLFEFAKNKTYPSGLSFS-PDGNKFVTIS  258 (261)
Q Consensus       230 ~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~  258 (261)
                      +.+..+..+...+.+++|+ |+++.|+.++
T Consensus       261 ~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          261 NHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             CEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             CEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            4444555556679999998 8988775554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.60  E-value=2.3e-11  Score=90.77  Aligned_cols=225  Identities=10%  Similarity=0.034  Sum_probs=146.9

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      ..+.++++.+ ++++++...++.|..++.. +. .....+......+.++++.++++++++...++.|..+|.. ++...
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~  138 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE  138 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CC-eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE
Confidence            5688899998 7777777778899999987 42 2222222234568899999999888877778899999986 55442


Q ss_pred             e-eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          83 M-IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        83 ~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      . +.........+.+.++++..++.    ..++.|..+|. +++... +........+..+.+++++.  ++++....+.
T Consensus       139 ~~~~~~~~~~~~i~~d~~g~l~v~~----~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~  210 (300)
T 2qc5_A          139 YDLPNKGSYPAFITLGSDNALWFTE----NQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGA--LWFVEIMGNK  210 (300)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEE----TTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSS--EEEEETTTTE
T ss_pred             ccCCCCCCCceeEEECCCCCEEEEe----cCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCC--EEEEccCCCE
Confidence            2 11122334455565666533322    45788999998 454433 33333334678899999885  3556556778


Q ss_pred             EEEEEccCCCccce-eeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCcc
Q psy6859         162 VHIYDCKGNGTPLH-VLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT  240 (261)
Q Consensus       162 i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (261)
                      |.+||..  ++... .+. .....+.+++++++|++.++...++.|..||.. +..              ....+.....
T Consensus       211 i~~~~~~--g~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~--------------~~~~~~~~~~  272 (300)
T 2qc5_A          211 IGRITTT--GEISEYDIP-TPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTI--------------QEYQLQTENA  272 (300)
T ss_dssp             EEEECTT--CCEEEEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE--------------EEEECCSTTC
T ss_pred             EEEEcCC--CcEEEEECC-CCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcE--------------EEEECCccCC
Confidence            9999974  33322 232 345678999999999977776677899999973 110              0111222345


Q ss_pred             ceeeeeECCCCceEEEe
Q psy6859         241 YPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       241 ~v~~~~~s~~~~~l~s~  257 (261)
                      .+.+++++++|++.++.
T Consensus       273 ~~~~i~~~~~g~l~v~~  289 (300)
T 2qc5_A          273 EPHGITFGKDGSVWFAL  289 (300)
T ss_dssp             CCCCEEECTTSCEEEEC
T ss_pred             ccceeEeCCCCCEEEEc
Confidence            68899999999876654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.60  E-value=2.8e-13  Score=103.78  Aligned_cols=172  Identities=9%  Similarity=0.093  Sum_probs=120.8

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEEccccc-----------eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859          48 VIHSICTNYNGTLLCTVASDKAMKVFDVINFD-----------MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRV  116 (261)
Q Consensus        48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i  116 (261)
                      +++.+++++...++++|+.+ .+++|++.+.+           .......+.  +..+.+  ++..++.+     .++.|
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f--d~~~L~v~-----~~~~l  108 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF--HGDQVLVS-----TRNAL  108 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE--ETTEEEEE-----ESSEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC--eeEEEE--CCCEEEEE-----cCCcE
Confidence            68999999999999999988 56679976543           112223232  445555  66555443     67999


Q ss_pred             EEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCE
Q psy6859         117 HIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQV  196 (261)
Q Consensus       117 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  196 (261)
                      ++||+++..........  ...+..+.+.+..    ++.++.||.|.+||+. .+....     +...|++++|+|+|  
T Consensus       109 ~v~dv~sl~~~~~~~~~--~~~v~~i~~~~p~----~av~~~dG~L~v~dl~-~~~~~~-----~~~~Vs~v~WSpkG--  174 (388)
T 1xip_A          109 YSLDLEELSEFRTVTSF--EKPVFQLKNVNNT----LVILNSVNDLSALDLR-TKSTKQ-----LAQNVTSFDVTNSQ--  174 (388)
T ss_dssp             EEEESSSTTCEEEEEEC--SSCEEEEEECSSE----EEEEETTSEEEEEETT-TCCEEE-----EEESEEEEEECSSE--
T ss_pred             EEEEchhhhccCcccee--ecceeeEEecCCC----EEEEECCCCEEEEEcc-CCcccc-----ccCCceEEEEcCCc--
Confidence            99999877654444433  2346677776553    5666789999999998 655432     34689999999999  


Q ss_pred             EEEEcCCCeEEEeecccccccCCeeeeeecccccceeec------C---CCccceeeeeECCCCceEEE
Q psy6859         197 VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF------A---KNKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       197 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~v~~~~~s~~~~~l~s  256 (261)
                      ++.|..||.+++|+......             ....++      .   +|...|.++.|.+++.+|++
T Consensus       175 ~~vg~~dg~i~~~~~~~~~~-------------~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          175 LAVLLKDRSFQSFAWRNGEM-------------EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEETTSCEEEEEEETTEE-------------EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             eEEEEcCCcEEEEcCCCccc-------------cccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            67888999999998754210             002222      2   47789999999999998886

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=5.6e-13  Score=111.09  Aligned_cols=228  Identities=7%  Similarity=-0.084  Sum_probs=135.2

Q ss_pred             C-CCeEEEecCCC---eEEEEecc--CCceeeeEEe----eccccceeEEEEeeCCCEEE-----EEeCCCcEEEEEccc
Q psy6859          13 K-TDFVITASNDG---HIKFWKKQ--EEGIEFVKHF----RSHLGVIHSICTNYNGTLLC-----TVASDKAMKVFDVIN   77 (261)
Q Consensus        13 ~-~~~l~s~~~d~---~i~iw~~~--~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~-----s~~~dg~v~~wd~~~   77 (261)
                      | |++++....++   .-.+|...  .+..+.+...    .+|...+..++|+|||++|+     .|+.+..|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            5 67666554433   34455543  3321222111    23555789999999999998     344456899999999


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCe-------------EEEEEcCCCcee--eEEeecCCcceEEEE
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSR-------------VHIYDCKGNDMI--NMIKLDFTPLTVECI  142 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~-------------i~i~d~~~~~~~--~~~~~~~~~~~~~~~  142 (261)
                      ++.+..............++++++.++..    +.+..             |++|++.++...  ..+....++..+..+
T Consensus       157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~----~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~  232 (695)
T 2bkl_A          157 GEWSKVDVIEGGKYATPKWTPDSKGFYYE----WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS  232 (695)
T ss_dssp             CCBCSSCCBSCCTTCCCEECTTSSEEEEE----ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred             CCCcCCcccCcccccceEEecCCCEEEEE----EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence            88651111222212467788898877766    44443             999999987632  333333344577899


Q ss_pred             EEeCCCCceEEEEecC--CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc---CCCeEEEeeccccccc
Q psy6859         143 HYLGDAIPTAAVSDQD--SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD---KAGILEYWSGYKQEFK  217 (261)
Q Consensus       143 ~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~  217 (261)
                      .++|++.++++.+...  ...|+++|.. ++ ....+. .+...+....+ ++|++++...   .++.|.+||+.++.. 
T Consensus       233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~-~~-~~~~l~-~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~-  307 (695)
T 2bkl_A          233 DLSRDGKYLFVYILRGWSENDVYWKRPG-EK-DFRLLV-KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR-  307 (695)
T ss_dssp             EECTTSCCEEEEEEETTTEEEEEEECTT-CS-SCEEEE-ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG-
T ss_pred             EECCCCCEEEEEEeCCCCceEEEEEcCC-CC-ceEEee-cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc-
Confidence            9999998754443332  1256666654 34 344454 45555666666 6666444444   357899999854210 


Q ss_pred             CCeeeeeecccccceeecCCC-ccceeeeeECCCCceEEEeecCC
Q psy6859         218 FPKCVHFESKLDTDLFEFAKN-KTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                 ......+..+ ...+..++|+ ++.++++...|+
T Consensus       308 -----------~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg  340 (695)
T 2bkl_A          308 -----------ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDA  340 (695)
T ss_dssp             -----------GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETT
T ss_pred             -----------cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECC
Confidence                       0012222222 4567778888 667777776654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.59  E-value=1.1e-11  Score=95.47  Aligned_cols=219  Identities=9%  Similarity=-0.077  Sum_probs=139.6

Q ss_pred             EEEEcC-CCeEEEec----------CCCeEEEEeccCCceeeeEEeecc-------ccceeEEEEeeCCCEEEEEeC--C
Q psy6859           8 HVVVTK-TDFVITAS----------NDGHIKFWKKQEEGIEFVKHFRSH-------LGVIHSICTNYNGTLLCTVAS--D   67 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--d   67 (261)
                      .++++| ++.++.+.          .++.|.+||..+.  +.+..+.-.       ......+.|+|||++|+.+..  +
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~  147 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence            789999 88777765          3678999999875  455544321       123458899999999998874  4


Q ss_pred             CcEEEEEccccceeee-eeccCcceeEEEEeecCCce-eeeeeecCCCCeEEEEEcCCCceeeEEe-----ecCCcceEE
Q psy6859          68 KAMKVFDVINFDMINM-IKLDFTPLTVECIHYLGDAI-PTAAVSDQDSSRVHIYDCKGNDMINMIK-----LDFTPLTVE  140 (261)
Q Consensus        68 g~v~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~~  140 (261)
                      +.|.++| .+++.+.. +.....    ..+.+.+... .+.    +.|+.+.++|. +++......     ....+ ...
T Consensus       148 ~~v~viD-~t~~~~~~~i~~~~~----~~~~~~~~~~~~~~----~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p-~~~  216 (373)
T 2mad_H          148 PAVGLVV-QGGSSDDQLLSSPTC----YHIHPGAPSTFYLL----CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN-LLT  216 (373)
T ss_pred             CeEEEEE-CCCCEEeEEcCCCce----EEEEeCCCceEEEE----cCCCCEEEEEC-CCcEEEEEeccccccCCcc-eee
Confidence            7899999 99988877 654322    2334444433 333    67999999999 776653322     11111 112


Q ss_pred             EEEEeCCCCceEEEEecCCCeEEEEEccCCC--ccceeecc---------CcccCeEEEEEcCCCCEEEEEcC-------
Q psy6859         141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG--TPLHVLDR---------LHTKPVVLIKFNPIYQVVVSVDK-------  202 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~-------  202 (261)
                      ...+.+++...++++  ..+.+.+.|+. ..  +.+..++.         ........+.++|+++.|+++..       
T Consensus       217 ~~~~~~~~~~~~~~~--~~~~v~vid~~-~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~  293 (373)
T 2mad_H          217 QPAQANKSGRIVWPV--YSGKILQADIS-AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL  293 (373)
T ss_pred             cceeEecCCEEEEEc--CCceEEEEecc-CCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence            344556554433333  57889999986 33  22223210         01222445789999987766543       


Q ss_pred             ---CCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCc-eEEEee
Q psy6859         203 ---AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGN-KFVTIS  258 (261)
Q Consensus       203 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~  258 (261)
                         .+.|.++|+.               +.+.+..+.. .....+++|+|||+ +|+++.
T Consensus       294 ~~~~~~V~VID~~---------------t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          294 HAAAKEVTSVTGL---------------VGQTSSQISL-GHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             cCCCCeEEEEECC---------------CCEEEEEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence               3579999984               3566666643 33678999999999 677665

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=9.1e-13  Score=98.43  Aligned_cols=192  Identities=10%  Similarity=0.000  Sum_probs=128.0

Q ss_pred             EEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEE
Q psy6859          40 KHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHI  118 (261)
Q Consensus        40 ~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i  118 (261)
                      ..+..+.....+++|+|+++ +++++..++.|..||..++  ...+..+......+.+.+++..+++.    ..++.|.+
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~----~~~~~i~~   94 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACS----HGLRRLER   94 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEE----TTTTEEEE
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEe----cCCCeEEE
Confidence            34444556678999999998 7778888999999999876  55555555556667777777654443    56789999


Q ss_pred             EEcCCCceeeEEeecCC--cceEEEEEEeCCCCceEEEE----ec-------------CCCeEEEEEccCCCccceeecc
Q psy6859         119 YDCKGNDMINMIKLDFT--PLTVECIHYLGDAIPTAAVS----DQ-------------DSSHVHIYDCKGNGTPLHVLDR  179 (261)
Q Consensus       119 ~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~-------------~d~~i~i~d~~~~~~~~~~~~~  179 (261)
                      ||..+++..........  ...+..++++|++..  +++    |+             ..+.|..++..  ++ +..+. 
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l--~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~-  168 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSL--WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT-LSAPI-  168 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCE--EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC-EEEEE-
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCE--EEECCccccccccccccccccCCCcEEEEECCC--CC-EEEee-
Confidence            99988765443322111  123567889999963  555    32             12345555542  33 33443 


Q ss_pred             CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccc---eeecCCCccceeeeeECCCCceEEE
Q psy6859         180 LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTD---LFEFAKNKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       180 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s  256 (261)
                      .+......++|+|+++.|++.+.++.|.+|++...              ++.   ...+..+...+.+++++++|+++++
T Consensus       169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~--------------g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~  234 (296)
T 3e5z_A          169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNAR--------------GETEYQGVHFTVEPGKTDGLRVDAGGLIWAS  234 (296)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSS--------------SCEEEEEEEECCSSSCCCSEEEBTTSCEEEE
T ss_pred             cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCC--------------CcCcCCCeEeeCCCCCCCeEEECCCCCEEEE
Confidence            56667899999999998887888899999998521              111   1112234556778999999987666


Q ss_pred             e
Q psy6859         257 I  257 (261)
Q Consensus       257 ~  257 (261)
                      .
T Consensus       235 ~  235 (296)
T 3e5z_A          235 A  235 (296)
T ss_dssp             E
T ss_pred             c
Confidence            5

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.59  E-value=1.5e-12  Score=108.32  Aligned_cols=228  Identities=9%  Similarity=0.004  Sum_probs=141.1

Q ss_pred             CCCCeEEEEEcC-CCeEEE-----ecCCCeEEEEeccCCceeeeE-EeeccccceeEEEEeeCCCEEEEEeCCC------
Q psy6859           2 HRSPITHVVVTK-TDFVIT-----ASNDGHIKFWKKQEEGIEFVK-HFRSHLGVIHSICTNYNGTLLCTVASDK------   68 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s-----~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg------   68 (261)
                      |...+..++||| +++||-     |+....|++||++++.  .+. .+.  ......++|+ |++.|+.++.+.      
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--~~~~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--PLETPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSEL  201 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--EEEEEEE--EEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--CCccccC--CceeccEEEe-CCCEEEEEEecCcccccc
Confidence            555788999999 888773     4444689999999873  322 222  1123678999 999999888774      


Q ss_pred             -------cEEEEEccccce--eeeeeccC---cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-eeeEEeecCC
Q psy6859          69 -------AMKVFDVINFDM--INMIKLDF---TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MINMIKLDFT  135 (261)
Q Consensus        69 -------~v~~wd~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~~~~  135 (261)
                             .|++|++.+++.  ...+....   .......++++++.++.....+.....|.++|+.++. ....+.....
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~  281 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD  281 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred             cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence                   399999887643  22222222   2234566788888776654444455799999998763 3344443322


Q ss_pred             cceEEEEEEeCCCCceEEEEecC--CCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEEc-CCC--eEEE
Q psy6859         136 PLTVECIHYLGDAIPTAAVSDQD--SSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSVD-KAG--ILEY  208 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~i~i  208 (261)
                        ..... +++++..+++.+...  .+.|..+|+. ++..  ...+. .+...+.  .|+++++.|+... .++  .|++
T Consensus       282 --~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~-~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~  354 (693)
T 3iuj_A          282 --ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA-NPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARVEQ  354 (693)
T ss_dssp             --SCEEE-EEEETTEEEEEECTTCTTCEEEEEETT-SCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred             --ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC-CCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence              22222 556665544444322  3679999997 5443  34554 5555554  8999999876655 444  6888


Q ss_pred             eecccccccCCeeeeeecccccceeecC-CCccceeeeeECCCCceEEEe
Q psy6859         209 WSGYKQEFKFPKCVHFESKLDTDLFEFA-KNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       209 wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~  257 (261)
                      ||+..                .....+. .....+..+.++|+++.|+..
T Consensus       355 ~d~~g----------------~~~~~l~~p~~~~~~~~~~~~d~~~l~~~  388 (693)
T 3iuj_A          355 FDYEG----------------KRVREVALPGLGSVSGFNGKHDDPALYFG  388 (693)
T ss_dssp             ECTTS----------------CEEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred             EECCC----------------CeeEEeecCCCceEEeeecCCCCCEEEEE
Confidence            88753                2222222 234556777788887766544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.55  E-value=1.1e-11  Score=95.47  Aligned_cols=229  Identities=10%  Similarity=0.075  Sum_probs=147.1

Q ss_pred             CeEEEecCCCeEEEEeccCC--ceeeeEEee-------ccccceeEEEEeeCCCEEEEEeCC------CcEEEEEccccc
Q psy6859          15 DFVITASNDGHIKFWKKQEE--GIEFVKHFR-------SHLGVIHSICTNYNGTLLCTVASD------KAMKVFDVINFD   79 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d------g~v~~wd~~~~~   79 (261)
                      .+++++..++.|.++|+.+.  ..+..++++       .....-..+...|++ .++++..+      +.+.++|..+++
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~  175 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE  175 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence            35667888899999998643  235555552       011234567788999 77776665      789999999999


Q ss_pred             eeeeeeccCcc---eeEEEEeecCCceeeeeee----------c-----CCCCeEEEEEcCCCceeeEEeecCCcceEEE
Q psy6859          80 MINMIKLDFTP---LTVECIHYLGDAIPTAAVS----------D-----QDSSRVHIYDCKGNDMINMIKLDFTPLTVEC  141 (261)
Q Consensus        80 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s----------~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  141 (261)
                      .+..+.....+   ..-.+++++++.+++.-+.          .     ....+|.+||+.+++.+..+...........
T Consensus       176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~  255 (462)
T 2ece_A          176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALE  255 (462)
T ss_dssp             EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEE
T ss_pred             EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccce
Confidence            99988754333   2236777877755543100          0     1378999999999888888876433334456


Q ss_pred             EEE--eCCCCceEEEEec-----CCCeEEEEEccCCCc--cceee--cc----C-----------cccCeEEEEEcCCCC
Q psy6859         142 IHY--LGDAIPTAAVSDQ-----DSSHVHIYDCKGNGT--PLHVL--DR----L-----------HTKPVVLIKFNPIYQ  195 (261)
Q Consensus       142 ~~~--~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~--~~~~~--~~----~-----------~~~~v~~~~~~~~~~  195 (261)
                      +.|  +|++.+. ++++-     .+++|.+|... .++  ..+.+  ..    .           -......|.++|||+
T Consensus       256 i~f~~~Pdg~~a-YV~~e~~~~~Lss~V~v~~~d-~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr  333 (462)
T 2ece_A          256 LRPLHDPTKLMG-FINMVVSLKDLSSSIWLWFYE-DGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK  333 (462)
T ss_dssp             EEECSSTTCCEE-EEEEEEETTTCCEEEEEEEEE-TTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC
T ss_pred             eEeeECCCCCEE-EEEEeeeccCCCceEEEEEec-CCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC
Confidence            656  9999864 44444     57788877665 331  11111  10    0           024578899999999


Q ss_pred             EEEEEc-CCCeEEEeecccccccCCeeeeeecccccceeecCC--------C------ccceeeeeECCCCceEEEee
Q psy6859         196 VVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK--------N------KTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       196 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------~~~v~~~~~s~~~~~l~s~~  258 (261)
                      +|+++. ..+.|.+||+...            ...+.+..+..        |      ......++++|||++|+++.
T Consensus       334 fLYVSnrg~d~VavfdV~d~------------~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          334 FLYLSLWGIGEVRQYDISNP------------FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEEEETTTTEEEEEECSST------------TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEEEeCCCCEEEEEEecCC------------CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            886655 6789999998532            11122221111        0      12468899999999998876

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.54  E-value=5.1e-12  Score=96.42  Aligned_cols=236  Identities=9%  Similarity=0.058  Sum_probs=143.6

Q ss_pred             CCeEEEEEcC-CCeEEEec--CCCeEEEEeccCCceeeeEEe-------eccccceeEEEEeeCCCEEEEEeC-----CC
Q psy6859           4 SPITHVVVTK-TDFVITAS--NDGHIKFWKKQEEGIEFVKHF-------RSHLGVIHSICTNYNGTLLCTVAS-----DK   68 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~-----dg   68 (261)
                      .....|+++| ++++++..  .++.++||.+.++  +.. .+       ..|-..+..++++++++++++-..     ++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD--GLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT--EEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC--Cee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence            3578899999 88877753  2343667766533  222 12       234467899999999876665433     57


Q ss_pred             cEEEEEccccceeeeeeccCc------ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec--CC-----
Q psy6859          69 AMKVFDVINFDMINMIKLDFT------PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD--FT-----  135 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~--~~-----  135 (261)
                      .|.+||+.+++.+..+..+..      ....+.+.+++..++....+...++.|.+||+.+++....+..+  ..     
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence            899999998987777664321      12445555544444333111115789999999887655544210  00     


Q ss_pred             --------------------cceEEEEEEeCCCCceEEEEecCCCeEEEEEccC--CC-----ccceeec-cCcccCeEE
Q psy6859         136 --------------------PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG--NG-----TPLHVLD-RLHTKPVVL  187 (261)
Q Consensus       136 --------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~-----~~~~~~~-~~~~~~v~~  187 (261)
                                          ...+..++++|++..+ +++......+..++...  .+     +....+. .++......
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~l-y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg  252 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWL-YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG  252 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCCCEEEEEECTTSCEE-EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred             eeECCEEEEeccCCCceeceecccceeEeccCCCEE-EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence                                0135789999999752 34434344666665420  11     0111111 023345677


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC-CCccceeeeeECCCCceEEEee
Q psy6859         188 IKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA-KNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       188 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      ++++++|.++++...++.|.+||..+               ++...... .+...+.+++|.++|+++++.+
T Consensus       253 ia~d~~G~l~va~~~~~~V~~~d~~~---------------G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          253 ISIDKDHNIYVGDLAHSAIGVITSAD---------------RAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEEETTT---------------TEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             EEECCCCCEEEEccCCCeEEEEECCC---------------CCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            99999999888888899999999732               22111111 1245688999999998877765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.53  E-value=1.4e-11  Score=90.97  Aligned_cols=179  Identities=10%  Similarity=0.023  Sum_probs=133.1

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecc-ccceeEEEEeeCCCEEEEEeC-CCcEEEEEcccccee
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH-LGVIHSICTNYNGTLLCTVAS-DKAMKVFDVINFDMI   81 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~~~~~~   81 (261)
                      .+.+++++| +++++  +.++.|..||. ++  +.+..+..+ ...+.++.+.++|+++++.+. ++.+..+|. +++.+
T Consensus        38 ~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G--~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l  111 (276)
T 3no2_A           38 ECNSVAATKAGEILF--SYSKGAKMITR-DG--RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVL  111 (276)
T ss_dssp             CCCEEEECTTSCEEE--ECBSEEEEECT-TS--CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEE
T ss_pred             CCcCeEECCCCCEEE--eCCCCEEEECC-CC--CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEE
Confidence            578899999 88777  45788999998 55  677777754 346888999999999999887 777887885 78877


Q ss_pred             eeeeccCc------ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          82 NMIKLDFT------PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        82 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      ..+.....      ........++++.+++.    ..++.|..||.+ ++.+..+.....   ...+...+++..  +++
T Consensus       112 ~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~----~~~~~v~~~d~~-G~~~w~~~~~~~---~~~~~~~~~g~~--~v~  181 (276)
T 3no2_A          112 SKTEFETGIERPHAQFRQINKNKKGNYLVPL----FATSEVREIAPN-GQLLNSVKLSGT---PFSSAFLDNGDC--LVA  181 (276)
T ss_dssp             EEEEECCSCSSGGGSCSCCEECTTSCEEEEE----TTTTEEEEECTT-SCEEEEEECSSC---CCEEEECTTSCE--EEE
T ss_pred             EEEeccCCCCcccccccCceECCCCCEEEEe----cCCCEEEEECCC-CCEEEEEECCCC---ccceeEcCCCCE--EEE
Confidence            77653211      22233456677776665    789999999998 888888876433   345677788864  677


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcc------cCeEEEEEcCCCCEEEEEc
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHT------KPVVLIKFNPIYQVVVSVD  201 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~  201 (261)
                      +..++.|..+|.. +++.+.++. ...      ..+..+...++|.++++..
T Consensus       182 ~~~~~~v~~~d~~-tG~~~w~~~-~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          182 CGDAHCFVQLNLE-SNRIVRRVN-ANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CBTTSEEEEECTT-TCCEEEEEE-GGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             eCCCCeEEEEeCc-CCcEEEEec-CCCCCCccccccccceEcCCCCEEEEec
Confidence            7777899999988 899988885 222      2378889999999887763

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.51  E-value=7.5e-12  Score=95.57  Aligned_cols=221  Identities=10%  Similarity=0.026  Sum_probs=139.9

Q ss_pred             EEEEcC-CCeEEEec----------CCCeEEEEeccCCceeeeEEeeccc-------cceeEEEEeeCCCEEEEEeC--C
Q psy6859           8 HVVVTK-TDFVITAS----------NDGHIKFWKKQEEGIEFVKHFRSHL-------GVIHSICTNYNGTLLCTVAS--D   67 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~--d   67 (261)
                      .++++| +++++++.          .++.|.+||..+.  +.+..+.-..       .....+.|+|||++++.+..  +
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~  159 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  159 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence            389999 87776654          3678999999987  6666554211       23567999999999888864  6


Q ss_pred             CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-CceeeEEeecCCcc--eE-EEEE
Q psy6859          68 KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDMINMIKLDFTPL--TV-ECIH  143 (261)
Q Consensus        68 g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~--~~-~~~~  143 (261)
                      +.|.++|+.+++.+.++.....   ........+.+++.    +.||.+.+.++.+ ++..........+.  .+ ....
T Consensus       160 ~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~----~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~  232 (386)
T 3sjl_D          160 PAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMH----CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA  232 (386)
T ss_dssp             CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE----ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCE
T ss_pred             CeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEE----CCCCCEEEEECCCCCeEEEeecceeccccccccccce
Confidence            8999999999999998875432   22222233444444    6799999999976 55432211111111  11 1234


Q ss_pred             Ee-CCCCceEEEEecCCCeEEEEEccCCCc--cceeec---------cCcccCeEEEEEcCCCCEEEEEcC---------
Q psy6859         144 YL-GDAIPTAAVSDQDSSHVHIYDCKGNGT--PLHVLD---------RLHTKPVVLIKFNPIYQVVVSVDK---------  202 (261)
Q Consensus       144 ~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~---------  202 (261)
                      |. +++..  ++ .+.+|.+++.|+. ...  .+..+.         .-.......++++|+++.++....         
T Consensus       233 ~~~~dG~~--~~-vs~~g~V~v~d~~-~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~  308 (386)
T 3sjl_D          233 YSQKAGRL--VW-PTYTGKIHQIDLS-SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT  308 (386)
T ss_dssp             EETTTTEE--EE-EBTTSEEEEEECT-TSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred             eEcCCCcE--EE-EeCCCEEEEEECC-CCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCC
Confidence            54 56642  23 3447999999996 432  232221         001223345778999987766542         


Q ss_pred             -CCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCc-eEEEe
Q psy6859         203 -AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGN-KFVTI  257 (261)
Q Consensus       203 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~  257 (261)
                       .+.|.++|+.               +.+.+..+.. ...+++++++||++ +|+++
T Consensus       309 ~~~~V~viD~~---------------t~kv~~~i~v-g~~~~~lavs~D~~~~ly~t  349 (386)
T 3sjl_D          309 ASRFVVVLDAK---------------TGERLAKFEM-GHEIDSINVSQDEKPLLYAL  349 (386)
T ss_dssp             CEEEEEEEETT---------------TCCEEEEEEE-EEEECEEEECSSSSCEEEEE
T ss_pred             CCCEEEEEECC---------------CCeEEEEEEC-CCCcceEEECCCCCeEEEEE
Confidence             2468888884               4666666553 34788999999997 66654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.51  E-value=3.2e-11  Score=90.50  Aligned_cols=226  Identities=9%  Similarity=-0.033  Sum_probs=139.5

Q ss_pred             CeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           5 PITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         5 ~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      ......|+| ++ ++++...++.|..|+.. +.   ...+..+...+..++++++|+++++...++.|.+|+.. ++...
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~  120 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL  120 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE
Confidence            456788999 76 67888888999999874 32   23444455678999999999877665566789999975 54322


Q ss_pred             eeec-cC---cceeEEEEeecCCceeeeeeecC-------------CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEe
Q psy6859          83 MIKL-DF---TPLTVECIHYLGDAIPTAAVSDQ-------------DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYL  145 (261)
Q Consensus        83 ~~~~-~~---~~~~~~~~~~~~~~~~~~~~s~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  145 (261)
                      .... ..   .....+.+.+++...++-...|.             ..+.|..+|..+++..... .   ......++|+
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~---~~~p~gl~~s  196 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D---LDHPNGLAFS  196 (305)
T ss_dssp             EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E---ESSEEEEEEC
T ss_pred             EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c---CCCCcceEEc
Confidence            2111 11   11234566666654432100011             1356778887666544332 1   1245678999


Q ss_pred             CCCCceEEEEecC-----CCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC
Q psy6859         146 GDAIPTAAVSDQD-----SSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF  218 (261)
Q Consensus       146 ~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  218 (261)
                      |++..+ +++.+.     .+.|..||+. ....  ...+..........++++++|++ .++..++ |.+|+..      
T Consensus       197 pdg~~l-yv~~~~~~~~~~~~i~~~~~~-~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~g-v~~~~~~------  266 (305)
T 3dr2_A          197 PDEQTL-YVSQTPEQGHGSVEITAFAWR-DGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGTG-VCVFDSD------  266 (305)
T ss_dssp             TTSSEE-EEEECCC---CCCEEEEEEEE-TTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSSE-EEEECTT------
T ss_pred             CCCCEE-EEEecCCcCCCCCEEEEEEec-CCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCCc-EEEECCC------
Confidence            999753 344333     2789999987 4331  11111112344567899999994 4444454 9999863      


Q ss_pred             CeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         219 PKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                                ++.+..+..+. .+.+++|+|+++.|..++.+
T Consensus       267 ----------g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          267 ----------GQLLGHIPTPG-TASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             ----------SCEEEEEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred             ----------CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence                      34444444433 58899999999888877654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.51  E-value=1.5e-14  Score=111.34  Aligned_cols=180  Identities=7%  Similarity=0.016  Sum_probs=100.6

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcc-ee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTP-LT   92 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-~~   92 (261)
                      +..+++++.|+.|..||..++  +.+..+..  +.+.+..+..+++.+++++.|+.|+.||..+++.+..+..+... ..
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG--~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTG--SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTC--CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             CCEEEEEcCCCEEEEEECCCC--CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            678999999999999999987  66666664  45666666677878888889999999999988876655432110 00


Q ss_pred             EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc
Q psy6859          93 VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT  172 (261)
Q Consensus        93 ~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  172 (261)
                      .......+..++.    ++.++.+..||.++++.+..+....      ...++|++..  ++.++.++.|+.||.+ +++
T Consensus        85 ~sp~~~~~~~v~~----g~~dg~v~a~D~~tG~~~w~~~~~~------~~~~~p~~~~--v~~~~~dg~v~a~d~~-tG~  151 (369)
T 2hz6_A           85 ASPCRSSDGILYM----GKKQDIWYVIDLLTGEKQQTLSSAF------ADSLSPSTSL--LYLGRTEYTITMYDTK-TRE  151 (369)
T ss_dssp             TCSCC-----CCC----CEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSS-SSS
T ss_pred             cCceEecCCEEEE----EeCCCEEEEEECCCCcEEEEecCCC------cccccccCCE--EEEEecCCEEEEEECC-CCC
Confidence            0000012333433    3678999999999998877665432      1233455443  6667778999999998 888


Q ss_pred             cceeeccCcccCeEEEEEcCCC---CEEEEEcCCCeEEEeeccc
Q psy6859         173 PLHVLDRLHTKPVVLIKFNPIY---QVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       173 ~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~  213 (261)
                      .+..+. ...  .....++++.   ..+++++.||.|..||..+
T Consensus       152 ~~W~~~-~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          152 LRWNAT-YFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             CCCEEE-EEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred             EEEeEe-ccc--ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence            877764 221  1223344432   4577788899999999865

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=1.1e-11  Score=104.06  Aligned_cols=198  Identities=12%  Similarity=0.030  Sum_probs=118.6

Q ss_pred             cccceeEEEEeeCCCEEEEEeCC-----CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecC--------
Q psy6859          45 HLGVIHSICTNYNGTLLCTVASD-----KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ--------  111 (261)
Q Consensus        45 ~~~~v~~~~~~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------  111 (261)
                      |...+..++|+|||++|+.++.+     ..|++||+.+++.+... ..........++++ +.++.......        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            33468899999999999887654     36999999998875531 11111234567777 76665521111        


Q ss_pred             --CCCeEEEEEcCCCce--eeEEeecCCcceEEEEEEeCCCCceEEEEec---CCCeEEEEEccCCC--ccceeeccCcc
Q psy6859         112 --DSSRVHIYDCKGNDM--INMIKLDFTPLTVECIHYLGDAIPTAAVSDQ---DSSHVHIYDCKGNG--TPLHVLDRLHT  182 (261)
Q Consensus       112 --~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~--~~~~~~~~~~~  182 (261)
                        ....|.+|++.++..  ...+....++..+..+.++|++.++++.+..   ....|++||+. ++  +....+. .+.
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~l~-~~~  316 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVT-NGKIGPVTALI-PDL  316 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEE-TTEECCCEEEE-CSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECC-CCCCcccEEec-CCC
Confidence              033589999987753  2233333333457899999999875444432   24589999997 55  3145554 444


Q ss_pred             cCeEEEEEcCCCCEEEEEcC----CCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         183 KPVVLIKFNPIYQVVVSVDK----AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       183 ~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      ..+... ++|+|+.|+..+.    ++.|.+||+.+..             ......+..+...+..+.|+ ++.++++..
T Consensus       317 ~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------------~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~  381 (741)
T 1yr2_A          317 KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-------------PRFDTVVPESKDNLESVGIA-GNRLFASYI  381 (741)
T ss_dssp             SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-------------CEEEEEECCCSSEEEEEEEE-BTEEEEEEE
T ss_pred             CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-------------cccEEEecCCCCeEEEEEEE-CCEEEEEEE
Confidence            445554 3488988776654    3458999985410             11222223344456666776 455666665


Q ss_pred             cCC
Q psy6859         259 MDR  261 (261)
Q Consensus       259 ~Dg  261 (261)
                      .|+
T Consensus       382 ~dg  384 (741)
T 1yr2_A          382 HDA  384 (741)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            553

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=7.5e-11  Score=88.62  Aligned_cols=199  Identities=13%  Similarity=0.102  Sum_probs=128.4

Q ss_pred             CCCCeEEEEEcCC-CeEEEecCCCeEEEEeccCCceeeeEE-ee---c-cccceeEEEEeeCCCEEEEEeCC--------
Q psy6859           2 HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKH-FR---S-HLGVIHSICTNYNGTLLCTVASD--------   67 (261)
Q Consensus         2 H~~~v~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~---~-~~~~v~~~~~~~~~~~l~s~~~d--------   67 (261)
                      +...+.++++++. ..|..+...+.|.+|+.+ +  +.... ..   . ....+.+++++++++++++...+        
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  145 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-G--TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT  145 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEETTTEEEEEETT-S--CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC
T ss_pred             CCCCCceEEEecCCCcEEEEECCCCEEEEeCC-C--CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccc
Confidence            3466889999984 655555555578899987 4  32222 11   1 12357899999999888877655        


Q ss_pred             -------CcEEEEEccccceeeeeeccCcceeEEEEe----ecCCceeeeeeecCCCCeEEEEEcC-CCceee--EE-ee
Q psy6859          68 -------KAMKVFDVINFDMINMIKLDFTPLTVECIH----YLGDAIPTAAVSDQDSSRVHIYDCK-GNDMIN--MI-KL  132 (261)
Q Consensus        68 -------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~--~~-~~  132 (261)
                             +.|..|+.. ++.......... ...+.+.    ++++.++..   ...++.|.+||+. +++...  .+ ..
T Consensus       146 ~~~~~~~~~l~~~~~~-g~~~~~~~~~~~-~~~i~~~~~~d~dg~~l~v~---~~~~~~i~~~~~~~~g~~~~~~~~~~~  220 (314)
T 1pjx_A          146 RSMQEKFGSIYCFTTD-GQMIQVDTAFQF-PNGIAVRHMNDGRPYQLIVA---ETPTKKLWSYDIKGPAKIENKKVWGHI  220 (314)
T ss_dssp             BTTSSSCEEEEEECTT-SCEEEEEEEESS-EEEEEEEECTTSCEEEEEEE---ETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred             ccccCCCCeEEEECCC-CCEEEeccCCCC-cceEEEecccCCCCCEEEEE---ECCCCeEEEEECCCCCccccceEEEEC
Confidence                   467777764 544332221112 2345566    655444333   2567899999986 343211  11 11


Q ss_pred             cCCc-ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEee
Q psy6859         133 DFTP-LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWS  210 (261)
Q Consensus       133 ~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd  210 (261)
                      .... .....+++++++.  ++++...++.|.+||.. +++.+..+. .+...+.+++|+|+++.| ++...++.|..|+
T Consensus       221 ~~~~~~~p~~i~~d~~G~--l~v~~~~~~~i~~~d~~-~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          221 PGTHEGGADGMDFDEDNN--LLVANWGSSHIEVFGPD-GGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             CCCSSCEEEEEEEBTTCC--EEEEEETTTEEEEECTT-CBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCCCCCCceEECCCCC--EEEEEcCCCEEEEEcCC-CCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            1121 4567899999986  35665568899999987 677777775 566789999999999955 5555678899999


Q ss_pred             cc
Q psy6859         211 GY  212 (261)
Q Consensus       211 ~~  212 (261)
                      +.
T Consensus       297 ~~  298 (314)
T 1pjx_A          297 WQ  298 (314)
T ss_dssp             CS
T ss_pred             CC
Confidence            75

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.45  E-value=2.9e-11  Score=93.86  Aligned_cols=200  Identities=11%  Similarity=0.046  Sum_probs=123.4

Q ss_pred             EEEEcC-CCeEEEec----------CCCeEEEEeccCCceeeeEEeecc-------ccceeEEEEeeCCCEEEEEeC--C
Q psy6859           8 HVVVTK-TDFVITAS----------NDGHIKFWKKQEEGIEFVKHFRSH-------LGVIHSICTNYNGTLLCTVAS--D   67 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--d   67 (261)
                      .++++| +++++.+.          .++.|.++|..+.  +.+..+.-.       ......+.++||+++++.+..  +
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~  199 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA  199 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence            789999 77776665          4678999999887  555555421       123467899999999998874  5


Q ss_pred             CcEEEEEccccceeeeeeccCcc-------eeEEEEeecCCceeee----------------------------------
Q psy6859          68 KAMKVFDVINFDMINMIKLDFTP-------LTVECIHYLGDAIPTA----------------------------------  106 (261)
Q Consensus        68 g~v~~wd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----------------------------------  106 (261)
                      +.|.+.|+.+++.+..+......       .....+.+++..++..                                  
T Consensus       200 ~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~  279 (426)
T 3c75_H          200 PAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL  279 (426)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred             CeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence            78999999999988887754320       0011122222211110                                  


Q ss_pred             eeecCCCCeEEEEEcCCCcee--eEEeec--------CCcceEEEEEEeCCCCceEEEEec--------CCCeEEEEEcc
Q psy6859         107 AVSDQDSSRVHIYDCKGNDMI--NMIKLD--------FTPLTVECIHYLGDAIPTAAVSDQ--------DSSHVHIYDCK  168 (261)
Q Consensus       107 ~~s~~~d~~i~i~d~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~--------~d~~i~i~d~~  168 (261)
                      .+. +..+.+.+.|+......  ..+...        ..+.....+.++|++..+++....        ..+.|.++|..
T Consensus       280 ~~~-s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~  358 (426)
T 3c75_H          280 VWP-TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE  358 (426)
T ss_dssp             EEE-BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EEE-eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence            000 11233444444322211  111100        001111126788887764333221        13579999999


Q ss_pred             CCCccceeeccCcccCeEEEEEcCCCC-EEEEEc-CCCeEEEeeccc
Q psy6859         169 GNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVD-KAGILEYWSGYK  213 (261)
Q Consensus       169 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~  213 (261)
                       +.+.+.++.  -......+.|+|||+ ++++.. .++.|.++|+.+
T Consensus       359 -T~kvv~~I~--vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          359 -TGERINKIE--LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             -TCCEEEEEE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             -CCeEEEEEE--CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence             899999985  334588999999999 888777 599999999954

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.41  E-value=8.2e-10  Score=80.12  Aligned_cols=193  Identities=13%  Similarity=0.053  Sum_probs=130.2

Q ss_pred             eeeEEeecccc--ceeEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC
Q psy6859          37 EFVKHFRSHLG--VIHSICTNYNGTLLCTVAS--DKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  112 (261)
Q Consensus        37 ~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~--dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  112 (261)
                      +.+.++. |..  ....+.|++++.++++.+.  ++.|.++|+.+++.+..+.....+.. ..+...++.++.+   .-.
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fg-eGi~~~g~~lyv~---t~~   84 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFG-EGLTLLNEKLYQV---VWL   84 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCE-EEEEEETTEEEEE---ETT
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcce-EEEEEeCCEEEEE---Eec
Confidence            4555564 443  3579999998755555543  57999999999999998876544322 2333446665554   357


Q ss_pred             CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcc-----cCeEE
Q psy6859         113 SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHT-----KPVVL  187 (261)
Q Consensus       113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~v~~  187 (261)
                      ++.+.++|..+.+.+..+... .+.   .+..++++..+ +++. .++.|.++|.. +.+.+..+. ...     ..++.
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g-~~~---g~glt~Dg~~l-~vs~-gs~~l~viD~~-t~~v~~~I~-Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQ-MKD---GWGLATDGKIL-YGSD-GTSILYEIDPH-TFKLIKKHN-VKYNGHRVIRLNE  156 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECC-SSS---CCEEEECSSSE-EEEC-SSSEEEEECTT-TCCEEEEEE-CEETTEECCCEEE
T ss_pred             CCEEEEEECCCCcEEEEEECC-CCC---eEEEEECCCEE-EEEC-CCCeEEEEECC-CCcEEEEEE-ECCCCccccccee
Confidence            899999999999999888754 222   12344566653 4444 58899999998 888887775 211     24678


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC-------------CccceeeeeECCCCceE
Q psy6859         188 IKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-------------NKTYPSGLSFSPDGNKF  254 (261)
Q Consensus       188 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l  254 (261)
                      +.|. +++..+....++.|.+.|..+               ++.+..+..             .....+.++|+|+++.|
T Consensus       157 le~~-dg~lyvn~~~~~~V~vID~~t---------------g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l  220 (266)
T 2iwa_A          157 LEYI-NGEVWANIWQTDCIARISAKD---------------GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI  220 (266)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEEETTT---------------CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred             EEEE-CCEEEEecCCCCeEEEEECCC---------------CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence            8888 776556666788999999965               333333321             11356899999998876


Q ss_pred             EEee
Q psy6859         255 VTIS  258 (261)
Q Consensus       255 ~s~~  258 (261)
                      +.++
T Consensus       221 fVTg  224 (266)
T 2iwa_A          221 FVTG  224 (266)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            6655

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.41  E-value=8.6e-10  Score=79.13  Aligned_cols=192  Identities=9%  Similarity=0.073  Sum_probs=130.8

Q ss_pred             eeeEEeeccccc--eeEEEEeeCCCEEEEEeCCC--cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC
Q psy6859          37 EFVKHFRSHLGV--IHSICTNYNGTLLCTVASDK--AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  112 (261)
Q Consensus        37 ~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  112 (261)
                      +.+.++. |...  ...|.|+ ++.++.+.+.+|  .|+.+|+.+++.+..+....... ...+...++.++.+   .-.
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F-geGit~~g~~ly~l---tw~  105 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF-GEGISDWKDKIVGL---TWK  105 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC-EEEEEEETTEEEEE---ESS
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc-eeEEEEeCCEEEEE---Eee
Confidence            4455564 5433  4788898 677777777776  89999999999999888765432 23344456666655   256


Q ss_pred             CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCc--c---cCeEE
Q psy6859         113 SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLH--T---KPVVL  187 (261)
Q Consensus       113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~---~~v~~  187 (261)
                      ++.+.+||..+.+.+..+......   ..++  +++.. ++++ ..++.|.++|.. +.+.+..++ ..  .   ..++.
T Consensus       106 ~~~v~v~D~~t~~~~~ti~~~~eG---~glt--~dg~~-L~~S-dGs~~i~~iDp~-T~~v~~~I~-V~~~g~~~~~lNE  176 (262)
T 3nol_A          106 NGLGFVWNIRNLRQVRSFNYDGEG---WGLT--HNDQY-LIMS-DGTPVLRFLDPE-SLTPVRTIT-VTAHGEELPELNE  176 (262)
T ss_dssp             SSEEEEEETTTCCEEEEEECSSCC---CCEE--ECSSC-EEEC-CSSSEEEEECTT-TCSEEEEEE-CEETTEECCCEEE
T ss_pred             CCEEEEEECccCcEEEEEECCCCc---eEEe--cCCCE-EEEE-CCCCeEEEEcCC-CCeEEEEEE-eccCCccccccce
Confidence            899999999999999999875422   2333  44543 2444 347889999998 888888776 21  1   33566


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC------------CCccceeeeeECCCCceEE
Q psy6859         188 IKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA------------KNKTYPSGLSFSPDGNKFV  255 (261)
Q Consensus       188 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~  255 (261)
                      +.|. +|+..+..-.+..|.+.|.++++               .+..+.            .-....+.++|+|+++.|.
T Consensus       177 Le~~-~G~lyan~w~~~~I~vIDp~tG~---------------V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf  240 (262)
T 3nol_A          177 LEWV-DGEIFANVWQTNKIVRIDPETGK---------------VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF  240 (262)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEECTTTCB---------------EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred             eEEE-CCEEEEEEccCCeEEEEECCCCc---------------EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence            7876 77766666678899999986643               222221            1124568999999888777


Q ss_pred             Eeec
Q psy6859         256 TISM  259 (261)
Q Consensus       256 s~~~  259 (261)
                      ..|.
T Consensus       241 VTGK  244 (262)
T 3nol_A          241 VTGK  244 (262)
T ss_dssp             EEET
T ss_pred             EECC
Confidence            7664

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.41  E-value=4.6e-10  Score=83.85  Aligned_cols=189  Identities=11%  Similarity=0.059  Sum_probs=121.2

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeec--cccceeEEEEeeCCCEEEEEeCC---------CcE
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRS--HLGVIHSICTNYNGTLLCTVASD---------KAM   70 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d---------g~v   70 (261)
                      ...+.++++++ ++++++ . ++.|.+||.+++..+.+.....  ....++.++++|+|+++++...+         ..-
T Consensus        53 ~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~  130 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQG  130 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred             CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCc
Confidence            35688999999 775444 4 5689999988763333322211  12457899999999977754322         234


Q ss_pred             EEEEccc-cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEc--CCCcee--eEE-eecCCcceEEEEEE
Q psy6859          71 KVFDVIN-FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC--KGNDMI--NMI-KLDFTPLTVECIHY  144 (261)
Q Consensus        71 ~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~--~~~~~~--~~~-~~~~~~~~~~~~~~  144 (261)
                      .+|.+.. ++... +.........+.++++++.++..   .+.++.|..||+  .++...  ..+ ...........+++
T Consensus       131 ~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~---~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~  206 (297)
T 3g4e_A          131 ALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYI---DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI  206 (297)
T ss_dssp             EEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEE---EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred             EEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEe---cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence            5665543 33322 22122223456778888765443   256789999997  455432  112 22222346788999


Q ss_pred             eCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc-CCCCEEEEEc
Q psy6859         145 LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN-PIYQVVVSVD  201 (261)
Q Consensus       145 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  201 (261)
                      ++++.  +.++....+.|..||.. +++.+..+. .+...+++++|. |+++.|+.++
T Consensus       207 d~~G~--lwva~~~~~~v~~~d~~-tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          207 DAEGK--LWVACYNGGRVIRLDPV-TGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             BTTSC--EEEEEETTTEEEEECTT-TCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CCCCC--EEEEEcCCCEEEEEcCC-CceEEEEEE-CCCCCceEEEEeCCCCCEEEEEc
Confidence            99985  35666667889999997 788888886 666789999998 8888665444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.39  E-value=6.7e-11  Score=91.88  Aligned_cols=103  Identities=13%  Similarity=0.103  Sum_probs=80.6

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe----------CCCcEEEEEccccceeeeeecc------
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA----------SDKAMKVFDVINFDMINMIKLD------   87 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~v~~wd~~~~~~~~~~~~~------   87 (261)
                      +.|.++|..+.  +.+.++..-..+  .+.++||+++++.+.          .++.|.++|..+++.+..+...      
T Consensus        99 ~~VsVID~~t~--~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~  174 (426)
T 3c75_H           99 TQQFVIDGSTG--RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL  174 (426)
T ss_dssp             EEEEEEETTTT--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred             CeEEEEECCCC--EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence            79999999987  777777655455  899999999888876          3678999999999998888754      


Q ss_pred             -CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee
Q psy6859          88 -FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL  132 (261)
Q Consensus        88 -~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~  132 (261)
                       ......+.+++++++++....  ..++.|.+.|+.+++.+..+..
T Consensus       175 ~g~~P~~~~~spDGk~lyV~n~--~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          175 VGTYQWMNALTPDNKNLLFYQF--SPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             BSCCGGGSEECTTSSEEEEEEC--SSSCEEEEEETTTTEEEEEEEC
T ss_pred             cCCCcceEEEcCCCCEEEEEec--CCCCeEEEEECCCCeEEEEEEc
Confidence             122345678889988877511  1368999999999998888775

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.39  E-value=4.1e-09  Score=76.48  Aligned_cols=193  Identities=10%  Similarity=-0.007  Sum_probs=135.3

Q ss_pred             eEEEEEcC-CCeEEEecC--CCeEEEEeccCCceeeeEEeecccc-ceeEEEEeeCCCEEEEE-eCCCcEEEEEccccce
Q psy6859           6 ITHVVVTK-TDFVITASN--DGHIKFWKKQEEGIEFVKHFRSHLG-VIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDM   80 (261)
Q Consensus         6 v~~~~~~~-~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~   80 (261)
                      ...++|+| +.++++.+.  ++.|.+.|+.++  +.+..+.-... ....+++.  ++.|+.+ -.++.+.++|..+.+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg--~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTG--KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTC--CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCC--CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence            57899999 655555443  689999999987  55555442111 12344444  4455444 4688999999999999


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc---eEEEEEEeCCCCceEEEEec
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL---TVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  157 (261)
                      +.++... .+. ...+.++++.++..    ..++.|.++|..+.+.+..+.....+.   ....+.+. ++.  +++...
T Consensus        99 ~~~i~~g-~~~-g~glt~Dg~~l~vs----~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~--lyvn~~  169 (266)
T 2iwa_A           99 IKNFTHQ-MKD-GWGLATDGKILYGS----DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE--VWANIW  169 (266)
T ss_dssp             EEEEECC-SSS-CCEEEECSSSEEEE----CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE--EEEEET
T ss_pred             EEEEECC-CCC-eEEEEECCCEEEEE----CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE--EEEecC
Confidence            9988765 222 23466678777655    568899999999998888877543221   35567777 552  456666


Q ss_pred             CCCeEEEEEccCCCccceeeccCc-------------ccCeEEEEEcCCCC-EEEEEcCCCeEEEeeccc
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLH-------------TKPVVLIKFNPIYQ-VVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~  213 (261)
                      .++.|.+.|.. +++.+..+. ..             ....+.|+|+|+++ +++++...+.+...++..
T Consensus       170 ~~~~V~vID~~-tg~V~~~I~-~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          170 QTDCIARISAK-DGTLLGWIL-LPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TSSEEEEEETT-TCCEEEEEE-CHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCCeEEEEECC-CCcEEEEEE-CCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            68899999999 898888886 21             13568999999987 456777888899988854

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.36  E-value=4.7e-10  Score=85.73  Aligned_cols=215  Identities=10%  Similarity=0.026  Sum_probs=135.9

Q ss_pred             EEEEEcC-CCeEEEecC--CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceee
Q psy6859           7 THVVVTK-TDFVITASN--DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMIN   82 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~   82 (261)
                      ..++|+| +++++.+..  ++.|.++|+.+.  +.+.++.-. + . ...+....+.+++.+.||.+.+.++.+ ++...
T Consensus       140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~--~vv~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK--AFKRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTTT--EEEEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             ceEEEcCCCCEEEEEEcCCCCeEEEEECCCC--cEEEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence            3588999 887777653  689999999987  777776522 1 1 223333556777888899999999875 55422


Q ss_pred             eee----ccCcceeE-EEE-eecCCceeeeeeecCCCCeEEEEEcCCCc--eeeEEee--------cCCcceEEEEEEeC
Q psy6859          83 MIK----LDFTPLTV-ECI-HYLGDAIPTAAVSDQDSSRVHIYDCKGND--MINMIKL--------DFTPLTVECIHYLG  146 (261)
Q Consensus        83 ~~~----~~~~~~~~-~~~-~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~--------~~~~~~~~~~~~~~  146 (261)
                      ...    ....+... ..+ .++++ ++..    +.++.|.+.|+.+..  ....+..        ...+.....+.+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~-~~~v----s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~  289 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGR-LVWP----TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR  289 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTE-EEEE----BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred             eecceeccccccccccceeEcCCCc-EEEE----eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence            111    11111110 122 23443 3333    568999999997664  3333321        01122333467788


Q ss_pred             CCCceEEEEec--------CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEE-cCCCeEEEeecccccc
Q psy6859         147 DAIPTAAVSDQ--------DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSV-DKAGILEYWSGYKQEF  216 (261)
Q Consensus       147 ~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~iwd~~~~~~  216 (261)
                      ++..++++...        ..+.|.++|+. +.+.++.+.  -...+.+|.++||++ +|++. ..++.|.++|..+   
T Consensus       290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~-t~kv~~~i~--vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t---  363 (386)
T 3sjl_D          290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAK-TGERLAKFE--MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES---  363 (386)
T ss_dssp             TTTEEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEE--EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTT---
T ss_pred             CCCeEEEEeccccccccCCCCCEEEEEECC-CCeEEEEEE--CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC---
Confidence            88875444331        12579999999 999999985  445788999999997 66654 5689999999954   


Q ss_pred             cCCeeeeeecccccceeecCCCccceeeeeECCC
Q psy6859         217 KFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPD  250 (261)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  250 (261)
                                  ++.+.++..- ...+.|.+++|
T Consensus       364 ------------~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          364 ------------GEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             ------------CCEEEEECCC-CSSCCEEEECC
T ss_pred             ------------CcEEEEecCC-CCCceeEECCc
Confidence                        6667666542 33456677776

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.36  E-value=4.8e-10  Score=89.44  Aligned_cols=230  Identities=10%  Similarity=0.031  Sum_probs=149.6

Q ss_pred             CCeE-EEecCCCeEEEEeccCCceeeeEEeec-cccceeEEEE-e-eCCCEEEEEe------------------CCCcEE
Q psy6859          14 TDFV-ITASNDGHIKFWKKQEEGIEFVKHFRS-HLGVIHSICT-N-YNGTLLCTVA------------------SDKAMK   71 (261)
Q Consensus        14 ~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~s~~------------------~dg~v~   71 (261)
                      |+++ ++...++.|.+.|+++.  +....+.- ....+..+++ + |+++++++++                  .++.+.
T Consensus       101 G~~lfVnd~~~~rVavIdl~t~--~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          101 GRFLFMNDKANTRVARVRCDVM--KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEETTTTEEEEEETTTT--EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCc--eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            3444 45556678999999987  55553321 1234678887 5 8999998884                  245799


Q ss_pred             EEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC----------------------------------CCeEE
Q psy6859          72 VFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD----------------------------------SSRVH  117 (261)
Q Consensus        72 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----------------------------------d~~i~  117 (261)
                      +.|..+.+.+.++.....+ ..+.++++++++++.......                                  -+.|.
T Consensus       179 vID~~t~~v~~qI~Vgg~p-d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNL-DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESSCC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCCCc-cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            9999999988888865543 455677777776665322100                                  13478


Q ss_pred             EEEcCC--Cce-eeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc------------cceeeccCcc
Q psy6859         118 IYDCKG--NDM-INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT------------PLHVLDRLHT  182 (261)
Q Consensus       118 i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~------------~~~~~~~~~~  182 (261)
                      +.|.++  ++. +..+....   ...++.++||+++ +++++..+.+|.++|+. +.+            .+.++  .-.
T Consensus       258 VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~-v~V~~~~s~~VsVid~~-~~~~~~~~~l~~~~~v~~~v--~vG  330 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKH-LCVAGKLSPTVTVLDVT-RFDAVFYENADPRSAVVAEP--ELG  330 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEES---SCCCEEECTTSSE-EEEECTTSSBEEEEEGG-GHHHHHHSCCCGGGGEEECC--BCC
T ss_pred             EEeCcccCCceeEEEEecCC---CceEEEEcCCCCE-EEEeCCCCCeEEEEECc-ccccccccccCcccceEEEc--CCC
Confidence            888887  444 45555433   3478999999996 47777789999999998 442            23333  234


Q ss_pred             cCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC-----CccceeeeeECCCCceEEEe
Q psy6859         183 KPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-----NKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       183 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~  257 (261)
                      .....++|+|+|....+...|+.|.+||+......+..     .+..+.+..+..     |...-.++.++|||++|+++
T Consensus       331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g-----~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAG-----EKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHT-----CSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcc-----cccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence            56789999999944456668999999998652100000     001223333333     33333456789999999987


Q ss_pred             e
Q psy6859         258 S  258 (261)
Q Consensus       258 ~  258 (261)
                      .
T Consensus       406 N  406 (595)
T 1fwx_A          406 S  406 (595)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.36  E-value=2.3e-09  Score=82.50  Aligned_cols=184  Identities=10%  Similarity=-0.051  Sum_probs=120.4

Q ss_pred             CCeEEEecC--CC---eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe----------CCCcEEEEEcccc
Q psy6859          14 TDFVITASN--DG---HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA----------SDKAMKVFDVINF   78 (261)
Q Consensus        14 ~~~l~s~~~--d~---~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~v~~wd~~~~   78 (261)
                      ++++++...  ..   +|.++|..+.  +.+..+.....+  .++++||+++++.+.          .++.|.+||..+.
T Consensus        32 ~~~~yv~~~~~~~~~~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           32 GRRSYINLPAHHSAIIQQWVLDAGSG--SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCEEEEeCCcccCCccEEEEEECCCC--eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            555555443  33   8899999887  666666644343  999999999999886          3678999999998


Q ss_pred             ceeeeeecc-------CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE-EeecCCcceEEEEEEeCCCCc
Q psy6859          79 DMINMIKLD-------FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM-IKLDFTPLTVECIHYLGDAIP  150 (261)
Q Consensus        79 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  150 (261)
                      +.+..+...       ........+++++++++....  ..++.|.++| .+++.+.. +....      ++.+.|++..
T Consensus       108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~--~~~~~v~viD-~t~~~~~~~i~~~~------~~~~~~~~~~  178 (373)
T 2mad_H          108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF--AAGPAVGLVV-QGGSSDDQLLSSPT------CYHIHPGAPS  178 (373)
T ss_pred             cEEEEEECCCccccccCCCccceEECCCCCEEEEEec--CCCCeEEEEE-CCCCEEeEEcCCCc------eEEEEeCCCc
Confidence            888877654       112235678899998877611  1257899999 99988776 54321      2445566554


Q ss_pred             eEEEEecCCCeEEEEEccCCCccceeec----cCcccC-eEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         151 TAAVSDQDSSHVHIYDCKGNGTPLHVLD----RLHTKP-VVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      . +++.+.||.+.++|.  +++.+....    .....+ .....+.+++..++..+..+.+.+.|+..
T Consensus       179 ~-~~~~~~dg~~~~vd~--~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~  243 (373)
T 2mad_H          179 T-FYLLCAQGGLAKTDH--AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             e-EEEEcCCCCEEEEEC--CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccC
Confidence            3 455667999999998  444432221    001112 22345677766544444678899999854

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.34  E-value=2.2e-10  Score=87.54  Aligned_cols=211  Identities=11%  Similarity=-0.023  Sum_probs=126.9

Q ss_pred             EEEEcC-CCeEEEec----------CCCeEEEEeccCCceeeeEEeecc-------ccceeEEEEeeCCCEEEEEeC--C
Q psy6859           8 HVVVTK-TDFVITAS----------NDGHIKFWKKQEEGIEFVKHFRSH-------LGVIHSICTNYNGTLLCTVAS--D   67 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--d   67 (261)
                      .++++| +++++++.          .++.|.+||..+.  +.+.++...       ......++++|||++++.+..  +
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~  146 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence            689999 77777665          4789999999987  667776533       123578999999999998864  4


Q ss_pred             CcEEE--EEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCC--------------------------------
Q psy6859          68 KAMKV--FDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS--------------------------------  113 (261)
Q Consensus        68 g~v~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d--------------------------------  113 (261)
                      ..+.+  +|..+   +..+.....    ..+.++++..+..   .+.|                                
T Consensus       147 ~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~---~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P  216 (368)
T 1mda_H          147 AAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYL---GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA  216 (368)
T ss_dssp             CEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEEC---CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred             CeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEE---EcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence            57888  89876   333332110    0011111111100   0122                                


Q ss_pred             --------------CeEEEEEcCCCc--eeeEEeecC--------CcceEEEEEEeCCCCceEEEEe-c-C-----CCeE
Q psy6859         114 --------------SRVHIYDCKGND--MINMIKLDF--------TPLTVECIHYLGDAIPTAAVSD-Q-D-----SSHV  162 (261)
Q Consensus       114 --------------~~i~i~d~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~-~-----d~~i  162 (261)
                                    +.+.+.|+.+..  .+..+....        .+.....+.++|++..+++... . .     ++.+
T Consensus       217 ~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~  296 (368)
T 1mda_H          217 AQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             EEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred             cccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence                          445555554321  111111100        0111112678999886433332 1 2     2356


Q ss_pred             EEEEccCCCccceeeccCcccCeEEEEEcCCCC-EEEEEc-CCCeEEEeecccccccCCeeeeeecccccceeecCCCcc
Q psy6859         163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-VVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT  240 (261)
Q Consensus       163 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (261)
                      .++|+. +.+.+..+.  -......++|+|||+ ++++.. .++.|.++|+.+               .+.+.++... .
T Consensus       297 ~ViD~~-t~~vv~~i~--vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t---------------~kvv~~I~vg-~  357 (368)
T 1mda_H          297 SSVTAS-VGQTSGPIS--NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS---------------DQDQSSVELD-K  357 (368)
T ss_dssp             EEEESS-SCCEEECCE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS---------------CEEEEECCCC-S
T ss_pred             EEEECC-CCeEEEEEE--CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCC---------------CcEEEEEECC-C
Confidence            699999 888888885  333689999999998 455665 589999999954               6667666643 3


Q ss_pred             ceeeeeECC
Q psy6859         241 YPSGLSFSP  249 (261)
Q Consensus       241 ~v~~~~~s~  249 (261)
                      ....+++.+
T Consensus       358 ~P~~i~~~~  366 (368)
T 1mda_H          358 GPESLSVQN  366 (368)
T ss_dssp             CCCEEECCC
T ss_pred             CCCEEEeec
Confidence            345666654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.33  E-value=9.2e-09  Score=73.20  Aligned_cols=201  Identities=9%  Similarity=0.054  Sum_probs=129.6

Q ss_pred             eeeEEeeccccc--eeEEEEeeCCCEEEEEeCCC--cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC
Q psy6859          37 EFVKHFRSHLGV--IHSICTNYNGTLLCTVASDK--AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  112 (261)
Q Consensus        37 ~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  112 (261)
                      +.+.++. |...  ...+.|++ +.++.+.+.+|  .|+.+|+.+++.+..+..+..... ..+...++.++.+   .-.
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg-eGi~~~~~~ly~l---tw~   83 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG-AGIVAWRDRLIQL---TWR   83 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE-EEEEEETTEEEEE---ESS
T ss_pred             EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce-eEEEEeCCEEEEE---Eee
Confidence            5566663 6543  56889986 56666767654  899999999999998887655422 2233445666654   257


Q ss_pred             CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcc-----cCeEE
Q psy6859         113 SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHT-----KPVVL  187 (261)
Q Consensus       113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~v~~  187 (261)
                      ++.+.+||.++.+.+..+.....+   ..++  +++.. ++++- .++.|.++|.. +.+.+.+++ ...     ..++.
T Consensus        84 ~~~v~v~D~~tl~~~~ti~~~~~G---wglt--~dg~~-L~vSd-gs~~l~~iDp~-t~~~~~~I~-V~~~g~~~~~lNe  154 (243)
T 3mbr_X           84 NHEGFVYDLATLTPRARFRYPGEG---WALT--SDDSH-LYMSD-GTAVIRKLDPD-TLQQVGSIK-VTAGGRPLDNLNE  154 (243)
T ss_dssp             SSEEEEEETTTTEEEEEEECSSCC---CEEE--ECSSC-EEEEC-SSSEEEEECTT-TCCEEEEEE-CEETTEECCCEEE
T ss_pred             CCEEEEEECCcCcEEEEEeCCCCc---eEEe--eCCCE-EEEEC-CCCeEEEEeCC-CCeEEEEEE-EccCCccccccee
Confidence            899999999999999999875432   3444  44443 34454 48899999998 888888776 221     34566


Q ss_pred             EEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec----CCCccceeeeeECCCCceEEEeec
Q psy6859         188 IKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF----AKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       188 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      +.+. +|+..+..-.+..|.+.|.++++....    .  ....+....    .......+.++++|+++.|...+.
T Consensus       155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~----i--dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          155 LEWV-NGELLANVWLTSRIARIDPASGKVVAW----I--DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEECTTTCBEEEE----E--ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             eEEe-CCEEEEEECCCCeEEEEECCCCCEEEE----E--ECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            7765 676556665677899999866432100    0  000000000    112245689999998777766553

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.31  E-value=3.8e-09  Score=75.85  Aligned_cols=181  Identities=12%  Similarity=0.100  Sum_probs=125.1

Q ss_pred             eEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEccccceeeee
Q psy6859           6 ITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         6 v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      ...+.|+.+.++.+.+.+|.|+++|++++  +.+..+  -..........++++ ..+..-.++.+.+||..+.+.+.++
T Consensus        57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tg--kv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFHQGHFFESTGHQGTLRQLSLESA--QPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEECCSSCS--SCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEECCEEEEEcCCCCEEEEEECCCC--cEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            35778877778888899999999999987  444444  123334422333333 4444457889999999999999998


Q ss_pred             eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc---eEEEEEEeCCCCceEEEEecCCCe
Q psy6859          85 KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL---TVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      ......   ..+.++++.++..    ..++.|.++|..+.+.+..+.....+.   .+..+.+. ++.  +++..-.+..
T Consensus       133 ~~~~eG---wGLt~Dg~~L~vS----dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~--lyanvw~s~~  202 (268)
T 3nok_A          133 RYSGEG---WGLCYWNGKLVRS----DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV--IYANIWHSSD  202 (268)
T ss_dssp             ECSSCC---CCEEEETTEEEEE----CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTCSE
T ss_pred             eCCCce---eEEecCCCEEEEE----CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE--EEEEECCCCe
Confidence            865443   2333567766655    568999999999999888887644332   23556666 443  3566556889


Q ss_pred             EEEEEccCCCccceeeccC------------cccCeEEEEEcCCCCEEEEEc
Q psy6859         162 VHIYDCKGNGTPLHVLDRL------------HTKPVVLIKFNPIYQVVVSVD  201 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~  201 (261)
                      |.+.|.+ +++.+..+...            .....+.|+++|+++.|+..+
T Consensus       203 I~vIDp~-TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          203 VLEIDPA-TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEECTT-TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEeCC-CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999998 99888877511            123578999999876554433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.31  E-value=1.8e-09  Score=84.29  Aligned_cols=198  Identities=9%  Similarity=-0.025  Sum_probs=117.5

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC--eEEEEEcCCCc
Q psy6859          48 VIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS--RVHIYDCKGND  125 (261)
Q Consensus        48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~--~i~i~d~~~~~  125 (261)
                      ....|+|+++++++++...++.|+.||..+++.......... .. ..+.++++.++..    ..++  .|.+++..++.
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~----d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSI----GWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEE----BSSTTCEEEEEEGGGTT
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEE----ecCCCceEEEEEcCCCc
Confidence            567899999998777777788999999987766554443322 33 6777888766665    4433  89999987665


Q ss_pred             eeeEEe-ecC-CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceee----ccCcccCe--EEEEEcCC-CCE
Q psy6859         126 MINMIK-LDF-TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVL----DRLHTKPV--VLIKFNPI-YQV  196 (261)
Q Consensus       126 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~v--~~~~~~~~-~~~  196 (261)
                      ....+. ... ....+.+++++|+... +++ +..++.|+.||.. .+.. ..+    ..+....-  ..++|+|+ +.+
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv-~d~~~~I~~~d~~-~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEW-LYF-VDSNKNFGRFNVK-TQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSE-EEE-ECTTCEEEEEETT-TCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCe-EEE-EECCCcEEEEECC-CCCE-EEEecccccCCCCCCccccEEEeCCCCEE
Confidence            433331 111 2335678899995443 233 5568899999987 4432 222    10222221  39999995 556


Q ss_pred             EEEEcCCCeEEEeecccccccCCeeeeeecccccce-eecCCCccceeeeeECCCCceEEEee
Q psy6859         197 VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDL-FEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       197 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      +++-..++.|+.|+...........   ....+..- ......-.....++++|+|+++++-+
T Consensus       282 yv~d~~~~~I~~~~~~g~~~~~~g~---~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          282 YMSDQNLSSVYKITPDGECEWFCGS---ATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             EEEETTTTEEEEECTTCCEEEEEEC---TTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             EEEeCCCCEEEEEecCCCEEEEEeC---CCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            6666788899999875320000000   00000000 00000123478899999998666544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.30  E-value=2.9e-10  Score=94.73  Aligned_cols=195  Identities=7%  Similarity=-0.013  Sum_probs=118.1

Q ss_pred             cccceeEEEEeeCCCEEEEEe-----CCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeec---------
Q psy6859          45 HLGVIHSICTNYNGTLLCTVA-----SDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD---------  110 (261)
Q Consensus        45 ~~~~v~~~~~~~~~~~l~s~~-----~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---------  110 (261)
                      |...+..++|+|||++|+-+.     ....|++||+.+++.+... ..........++ +++.++....-.         
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            445788899999999888432     2357999999999865531 111112344566 887776651110         


Q ss_pred             CCCCeEEEEEcCCCce--eeEEeecC-CcceEEEEEEeCCCCceEEEEec--CCCeEEEEEccCCC-ccceeeccCcccC
Q psy6859         111 QDSSRVHIYDCKGNDM--INMIKLDF-TPLTVECIHYLGDAIPTAAVSDQ--DSSHVHIYDCKGNG-TPLHVLDRLHTKP  184 (261)
Q Consensus       111 ~~d~~i~i~d~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~-~~~~~~~~~~~~~  184 (261)
                      .....|++|++.+...  ...+.... ++.....+.++|++.++++.+..  ..+.|+++|+. ++ .....+. .+...
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~-~~~~~~~~l~-~~~~~  282 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS-QENAPLLTVQ-GDLDA  282 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT-STTCCCEEEE-CSSSS
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC-CCCCceEEEe-CCCCc
Confidence            1124599999987653  23333322 33456789999999975444332  23589999997 44 2455554 55555


Q ss_pred             eEEEEEcCCCCEE-EEEcCC---CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         185 VVLIKFNPIYQVV-VSVDKA---GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       185 v~~~~~~~~~~~l-~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      .... ++++|..| +....+   +.|..+|+.+..             ......+..|...+.  .|+|++++|+....
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~-------------~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~  345 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG-------------PAHWRDLIPERQQVL--TVHSGSGYLFAEYM  345 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC-------------GGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC-------------ccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence            5555 66666655 444443   578888885421             111233444555544  88888888776653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.29  E-value=5.9e-09  Score=74.85  Aligned_cols=191  Identities=6%  Similarity=-0.002  Sum_probs=128.6

Q ss_pred             eeeEEeeccccc--eeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC
Q psy6859          37 EFVKHFRSHLGV--IHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  114 (261)
Q Consensus        37 ~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~  114 (261)
                      +.+.++. |...  ...+.|+ ++.++.+.+.+|.|+.+|+.+++.+..+ ..... ....+...++.++.+   .-.++
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~-FgeGit~~g~~Ly~l---tw~~~  116 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI-FAEGLASDGERLYQL---TWTEG  116 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC-CEEEEEECSSCEEEE---ESSSC
T ss_pred             EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc-ceeEEEEeCCEEEEE---EccCC
Confidence            3445553 4433  3688887 4667778888999999999999998888 55443 223344556666654   25789


Q ss_pred             eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeecc-Ccc---cCeEEEEE
Q psy6859         115 RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR-LHT---KPVVLIKF  190 (261)
Q Consensus       115 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~---~~v~~~~~  190 (261)
                      .+.+||.++.+.+..+......   ..+++  ++.. ++++. .++.|.++|.. +.+.+.+++- ...   ..++.+.|
T Consensus       117 ~v~V~D~~Tl~~~~ti~~~~eG---wGLt~--Dg~~-L~vSd-Gs~~l~~iDp~-T~~v~~~I~V~~~g~~v~~lNeLe~  188 (268)
T 3nok_A          117 LLFTWSGMPPQRERTTRYSGEG---WGLCY--WNGK-LVRSD-GGTMLTFHEPD-GFALVGAVQVKLRGQPVELINELEC  188 (268)
T ss_dssp             EEEEEETTTTEEEEEEECSSCC---CCEEE--ETTE-EEEEC-SSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EEEEEECCcCcEEEEEeCCCce---eEEec--CCCE-EEEEC-CCCEEEEEcCC-CCeEEEEEEeCCCCcccccccccEE
Confidence            9999999999999999865332   34443  4443 34444 48899999998 8888887761 111   24577787


Q ss_pred             cCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC-------------CCccceeeeeECCCCceEEEe
Q psy6859         191 NPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA-------------KNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       191 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~s~  257 (261)
                      . +|+..+..-.+..|.+.|.++++               .+..+.             .-....+.|+|+|+++.|...
T Consensus       189 ~-dG~lyanvw~s~~I~vIDp~TG~---------------V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT  252 (268)
T 3nok_A          189 A-NGVIYANIWHSSDVLEIDPATGT---------------VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT  252 (268)
T ss_dssp             E-TTEEEEEETTCSEEEEECTTTCB---------------EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred             e-CCEEEEEECCCCeEEEEeCCCCc---------------EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence            7 77655666578899999986643               222221             122466899999987766655


Q ss_pred             e
Q psy6859         258 S  258 (261)
Q Consensus       258 ~  258 (261)
                      +
T Consensus       253 G  253 (268)
T 3nok_A          253 G  253 (268)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.28  E-value=9.5e-09  Score=73.79  Aligned_cols=181  Identities=7%  Similarity=0.022  Sum_probs=124.8

Q ss_pred             EEEEEcCCCeEEEecCCC--eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEccccceeee
Q psy6859           7 THVVVTKTDFVITASNDG--HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVINFDMINM   83 (261)
Q Consensus         7 ~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~~~~~~~   83 (261)
                      ..+.|+.+.++.+.+.+|  .|+++|++++  +.+..+.-. .........++++.|.... .++.+.++|..+.+.+.+
T Consensus        46 qGL~~~~~~LyestG~~g~S~v~~vD~~Tg--kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNGRSSIRKVDIESG--KTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEECTTTC--CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             ceEEEECCEEEEECCCCCCceEEEEECCCC--cEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            677787665666777766  8999999987  555555432 3444443444455555554 688999999999999999


Q ss_pred             eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCc---ceEEEEEEeCCCCceEEEEecCCC
Q psy6859          84 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTP---LTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      +......   ..+.++++.++..    ..++.|.++|..+.+.+..+......   ..+..+.+. ++.  +++..-.++
T Consensus       123 i~~~~eG---~glt~dg~~L~~S----dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~--lyan~w~~~  192 (262)
T 3nol_A          123 FNYDGEG---WGLTHNDQYLIMS----DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE--IFANVWQTN  192 (262)
T ss_dssp             EECSSCC---CCEEECSSCEEEC----CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTSS
T ss_pred             EECCCCc---eEEecCCCEEEEE----CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE--EEEEEccCC
Confidence            8875433   2334566666554    55788999999999988888764322   233446665 453  456665688


Q ss_pred             eEEEEEccCCCccceeeccC-----------cccCeEEEEEcCCCCEEEEEc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRL-----------HTKPVVLIKFNPIYQVVVSVD  201 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~  201 (261)
                      .|.+.|.+ +++.+..+...           .....+.|+|+|+++.|+..+
T Consensus       193 ~I~vIDp~-tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          193 KIVRIDPE-TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEEECTT-TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             eEEEEECC-CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            99999998 99888877511           023568999999988765555

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.27  E-value=4.8e-10  Score=85.69  Aligned_cols=103  Identities=12%  Similarity=-0.052  Sum_probs=76.6

Q ss_pred             CeEEEecCCC----eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe----------CCCcEEEEEccccce
Q psy6859          15 DFVITASNDG----HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA----------SDKAMKVFDVINFDM   80 (261)
Q Consensus        15 ~~l~s~~~d~----~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg~v~~wd~~~~~~   80 (261)
                      ..+++-..++    +|.+.|..+.  +.+.++.....+  .+.++||+++++.+.          .++.|.+||+.+++.
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~--~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCG--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTT--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             eEEEECCccCCccceEEEEECCCC--eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            3455555555    8889999887  777777655555  799999999998886          368899999999999


Q ss_pred             eeeeeccC-------cceeEEEEeecCCceeeeeeecCCCCeEEE--EEcCC
Q psy6859          81 INMIKLDF-------TPLTVECIHYLGDAIPTAAVSDQDSSRVHI--YDCKG  123 (261)
Q Consensus        81 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i--~d~~~  123 (261)
                      +.++..+.       .....+.+++++++++....  +.+..+.+  +|+.+
T Consensus       109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~--~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF--GSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC--SSSCEEEEEETTTEE
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEcc--CCCCeEEEEEEchhh
Confidence            99987651       22346788899988877611  12467888  88866

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.27  E-value=2.6e-09  Score=88.61  Aligned_cols=222  Identities=12%  Similarity=0.084  Sum_probs=141.3

Q ss_pred             CCeEEEecC------CCeEEEEeccCCceeeeEEeecccc--------------------------------ceeEEEEe
Q psy6859          14 TDFVITASN------DGHIKFWKKQEEGIEFVKHFRSHLG--------------------------------VIHSICTN   55 (261)
Q Consensus        14 ~~~l~s~~~------d~~i~iw~~~~~~~~~~~~~~~~~~--------------------------------~v~~~~~~   55 (261)
                      +..++.++.      ++.|+.+|..++  +.+..+.....                                ....++++
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG--~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d  251 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETG--ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD  251 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTC--CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCC--cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc
Confidence            345555543      789999999887  45544432111                                11357888


Q ss_pred             eCCCEEEEEeCCC-------------------cEEEEEccccceeeeeeccCc---------ceeEEEEeecCCceeeee
Q psy6859          56 YNGTLLCTVASDK-------------------AMKVFDVINFDMINMIKLDFT---------PLTVECIHYLGDAIPTAA  107 (261)
Q Consensus        56 ~~~~~l~s~~~dg-------------------~v~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  107 (261)
                      +++..++.+..++                   .|..+|..+|+.+..++...+         .........+++.. -.+
T Consensus       252 ~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~-~~l  330 (677)
T 1kb0_A          252 AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPR-KVI  330 (677)
T ss_dssp             TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEE-EEE
T ss_pred             CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEe-eEE
Confidence            8888888877664                   499999999999888775322         11122222344211 122


Q ss_pred             eecCCCCeEEEEEcCCCceeeEEeecCCc--------c-eE------------------------EEEEEeCCCCceEEE
Q psy6859         108 VSDQDSSRVHIYDCKGNDMINMIKLDFTP--------L-TV------------------------ECIHYLGDAIPTAAV  154 (261)
Q Consensus       108 ~s~~~d~~i~i~d~~~~~~~~~~~~~~~~--------~-~~------------------------~~~~~~~~~~~~~~~  154 (261)
                      +.++.+|.++++|.++++.+..+.....+        . .+                        ..++++|+...+++.
T Consensus       331 ~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~  410 (677)
T 1kb0_A          331 LHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLP  410 (677)
T ss_dssp             EECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEE
T ss_pred             EEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEe
Confidence            33489999999999999988766532111        0 01                        145778876642222


Q ss_pred             Eec-----------------------------------------CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCC
Q psy6859         155 SDQ-----------------------------------------DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPI  193 (261)
Q Consensus       155 ~~~-----------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  193 (261)
                      +..                                         ..+.|..||+. +++.+.+++  +..++....+..+
T Consensus       411 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~-tG~~~W~~~--~~~~~~~g~~~~~  487 (677)
T 1kb0_A          411 AQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV-AQKAAWSVE--HVSPWNGGTLTTA  487 (677)
T ss_dssp             EEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT-TTEEEEEEE--ESSSCCCCEEEET
T ss_pred             ChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC-CCcEEeecC--CCCCCcCcceEeC
Confidence            110                                         12789999998 999888885  4445555667778


Q ss_pred             CCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC-CccceeeeeECCCCceEEE
Q psy6859         194 YQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       194 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s  256 (261)
                      +.+++.++.||.+++||.++               ++.+..+.. +.....-+.|.++|+.+++
T Consensus       488 g~~v~~g~~dg~l~a~D~~t---------------G~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          488 GNVVFQGTADGRLVAYHAAT---------------GEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTT---------------CCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCEEEEECCCCcEEEEECCC---------------CceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            88888899999999999954               666666653 2223344566778875443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.27  E-value=3e-09  Score=88.39  Aligned_cols=213  Identities=9%  Similarity=0.037  Sum_probs=134.2

Q ss_pred             CCCeEEEEeccCCceeeeEEeecc-------------------------------ccceeEEEEeeCCCEEEEEeCCCc-
Q psy6859          22 NDGHIKFWKKQEEGIEFVKHFRSH-------------------------------LGVIHSICTNYNGTLLCTVASDKA-   69 (261)
Q Consensus        22 ~d~~i~iw~~~~~~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~~~l~s~~~dg~-   69 (261)
                      .++.|..||..++  +.+..+...                               ...-..++++|+...++.+..++. 
T Consensus       181 ~~g~v~a~D~~tG--~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~  258 (689)
T 1yiq_A          181 VRGYVTAYDAETG--KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSL  258 (689)
T ss_dssp             CBCEEEEEETTTC--CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEES
T ss_pred             CCCEEEEEECCCC--cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCc
Confidence            3789999999987  444444310                               011125788888888998887764 


Q ss_pred             ------------------EEEEEccccceeeeeeccCc---------ceeEEEEeecCCceeeeeeecCCCCeEEEEEcC
Q psy6859          70 ------------------MKVFDVINFDMINMIKLDFT---------PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK  122 (261)
Q Consensus        70 ------------------v~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~  122 (261)
                                        |..+|..+|+.+..++...+         +.....+..++... -.++.++.+|.++++|.+
T Consensus       259 w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~-~~v~~~~~~G~l~~lD~~  337 (689)
T 1yiq_A          259 WDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPR-KVLMQAPKNGFFYVIDRA  337 (689)
T ss_dssp             SCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE-EEEEECCTTSEEEEEETT
T ss_pred             cccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEE-EEEEEECCCCeEEEEECC
Confidence                              99999999999888764321         11122222334311 122345899999999999


Q ss_pred             CCceeeEEeecCCc--------------------------ceE-----------EEEEEeCCCCceEEEEec--------
Q psy6859         123 GNDMINMIKLDFTP--------------------------LTV-----------ECIHYLGDAIPTAAVSDQ--------  157 (261)
Q Consensus       123 ~~~~~~~~~~~~~~--------------------------~~~-----------~~~~~~~~~~~~~~~~~~--------  157 (261)
                      +++.+........+                          ..+           ..++++|+...+++.+..        
T Consensus       338 tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~  417 (689)
T 1yiq_A          338 TGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHI  417 (689)
T ss_dssp             TCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECC
T ss_pred             CCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeec
Confidence            99987544322100                          000           125677776532221110        


Q ss_pred             -----------------------------------CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcC
Q psy6859         158 -----------------------------------DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK  202 (261)
Q Consensus       158 -----------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  202 (261)
                                                         .+|.|+.||+. +++.+..++  +..++..-.+...+.+++.++.
T Consensus       418 ~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~-tG~~~W~~~--~~~~~~~g~~~tagglvf~gt~  494 (689)
T 1yiq_A          418 PEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV-KQQAAWEVP--YVTIFNGGTLSTAGNLVFEGSA  494 (689)
T ss_dssp             SSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT-TTEEEEEEE--ESSSCCCCEEEETTTEEEEECT
T ss_pred             cccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC-CCCeEeEcc--CCCCccCccceECCCEEEEECC
Confidence                                               14789999999 999888885  3333444456667888999999


Q ss_pred             CCeEEEeecccccccCCeeeeeecccccceeecCCCc-cceeeeeECCCCceEE
Q psy6859         203 AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK-TYPSGLSFSPDGNKFV  255 (261)
Q Consensus       203 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~  255 (261)
                      ||.++.||.+               +++.+.+++... ....-+.|..+|+..+
T Consensus       495 dg~l~a~D~~---------------tG~~lw~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          495 DGRVIAYAAD---------------TGEKLWEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             TSEEEEEETT---------------TCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCcEEEEECC---------------CCccceeeeCCCCcccCceEEEECCEEEE
Confidence            9999999995               467776665432 2224567778887443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.25  E-value=2.1e-08  Score=75.88  Aligned_cols=187  Identities=11%  Similarity=0.024  Sum_probs=114.0

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeec--cccceeEEEEeeCCCEEEEEeCC----CcEEEEEcc
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRS--HLGVIHSICTNYNGTLLCTVASD----KAMKVFDVI   76 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d----g~v~~wd~~   76 (261)
                      ..+.+++++| ++++++ +.+ .|.+|+..++....+.....  ....++.++++|+|+++++...+    +...||.+.
T Consensus        90 ~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CcceEEEEeCCCeEEEE-ECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence            4688999998 665554 444 48899987763332222211  12458899999999877655422    223444443


Q ss_pred             ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC--CC-cee--eEE-eecCCcceEEEEEEeCCCCc
Q psy6859          77 NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK--GN-DMI--NMI-KLDFTPLTVECIHYLGDAIP  150 (261)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~--~~-~~~--~~~-~~~~~~~~~~~~~~~~~~~~  150 (261)
                      +++... +...........++++++.++..   .+.++.|.+||+.  ++ ...  ..+ ...........+.+++++. 
T Consensus       168 ~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~---~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-  242 (326)
T 2ghs_A          168 KGKVTK-LFADISIPNSICFSPDGTTGYFV---DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-  242 (326)
T ss_dssp             TTEEEE-EEEEESSEEEEEECTTSCEEEEE---ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-
T ss_pred             CCcEEE-eeCCCcccCCeEEcCCCCEEEEE---ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-
Confidence            444332 22121223456677777755443   2567899999986  55 321  122 1222234567888999886 


Q ss_pred             eEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc-CCCCEEEEEc
Q psy6859         151 TAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN-PIYQVVVSVD  201 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  201 (261)
                       +.++...++.|..||.  +++.+..+. .+...+++++|+ |+++.|+.++
T Consensus       243 -lwva~~~~~~v~~~d~--~g~~~~~i~-~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          243 -IWNARWGEGAVDRYDT--DGNHIARYE-VPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             -EEEEEETTTEEEEECT--TCCEEEEEE-CSCSBEEEEEEESTTSCEEEEEE
T ss_pred             -EEEEEeCCCEEEEECC--CCCEEEEEE-CCCCCcEEEEEecCCCCEEEEEe
Confidence             2555545688999997  456666775 556679999998 8888665444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.24  E-value=2.7e-08  Score=70.83  Aligned_cols=182  Identities=7%  Similarity=0.005  Sum_probs=124.1

Q ss_pred             eEEEEEcCCCeEEEecCCC--eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEE-EeCCCcEEEEEccccceee
Q psy6859           6 ITHVVVTKTDFVITASNDG--HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCT-VASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         6 v~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~v~~wd~~~~~~~~   82 (261)
                      ...+.|+++.++.+.+.+|  .|+.+|++++  +.+..+.-. ...........++.|.. .-.++.+.++|..+.+.+.
T Consensus        23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tg--kv~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~   99 (243)
T 3mbr_X           23 TEGLFYLRGHLYESTGETGRSSVRKVDLETG--RILQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA   99 (243)
T ss_dssp             EEEEEEETTEEEEEECCTTSCEEEEEETTTC--CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cccEEEECCEEEEECCCCCCceEEEEECCCC--CEEEEEeCC-CCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence            5678888876777777754  8999999987  555555422 23333333343444444 4468899999999999999


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc---eEEEEEEeCCCCceEEEEecCC
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL---TVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ++......   ..+..+++.++..    ..++.|.++|..+.+.+..+.....+.   .+..+.+. ++.  +++..-.+
T Consensus       100 ti~~~~~G---wglt~dg~~L~vS----dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~--lyanvw~s  169 (243)
T 3mbr_X          100 RFRYPGEG---WALTSDDSHLYMS----DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE--LLANVWLT  169 (243)
T ss_dssp             EEECSSCC---CEEEECSSCEEEE----CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTT
T ss_pred             EEeCCCCc---eEEeeCCCEEEEE----CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE--EEEEECCC
Confidence            99876543   2334566666555    568899999999999888887643322   33455555 342  35555567


Q ss_pred             CeEEEEEccCCCccceeeccC------------cccCeEEEEEcCCCCEEEEEc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRL------------HTKPVVLIKFNPIYQVVVSVD  201 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~  201 (261)
                      ..|.+.|.+ +++.+..+...            .....+.|+++|+++.|+..+
T Consensus       170 ~~I~vIDp~-tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          170 SRIARIDPA-SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TEEEEECTT-TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CeEEEEECC-CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            899999999 88888777511            123568999999877665444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.23  E-value=3.3e-09  Score=79.49  Aligned_cols=187  Identities=9%  Similarity=0.036  Sum_probs=116.4

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeE-Eeecc-ccceeEEEEeeCCCEEEE----EeC---------
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVK-HFRSH-LGVIHSICTNYNGTLLCT----VAS---------   66 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~s----~~~---------   66 (261)
                      ...+..+++++ ++++++...++.|.+|+.+ +....+. ...+. ...++.+++.++|+++++    +..         
T Consensus        85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~  163 (305)
T 3dr2_A           85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPAD  163 (305)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred             CCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccc
Confidence            34578899999 7766666666889999986 3222221 11111 134678999999998886    332         


Q ss_pred             ----CCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC-----CCeEEEEEcCCCceeeEEe--ecCC
Q psy6859          67 ----DKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-----SSRVHIYDCKGNDMINMIK--LDFT  135 (261)
Q Consensus        67 ----dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----d~~i~i~d~~~~~~~~~~~--~~~~  135 (261)
                          .+.|..+|..+++.....  .......+.++++++.++..   .+.     .+.|..|++.... +....  ....
T Consensus       164 ~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~---~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~  237 (305)
T 3dr2_A          164 PELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVS---QTPEQGHGSVEITAFAWRDGA-LHDRRHFASVP  237 (305)
T ss_dssp             CSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEE---ECCC---CCCEEEEEEEETTE-EEEEEEEECCS
T ss_pred             cccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEE---ecCCcCCCCCEEEEEEecCCC-ccCCeEEEECC
Confidence                245777777666544332  22233456778888766554   122     3789999987654 21111  1112


Q ss_pred             cceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCC
Q psy6859         136 PLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG  204 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  204 (261)
                      ......+.+++++.   +..+.. +.|.+|+.  .++.+..+. ... .+..++|+|+++.|+.++.++
T Consensus       238 ~~~pdgi~~d~~G~---lwv~~~-~gv~~~~~--~g~~~~~~~-~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          238 DGLPDGFCVDRGGW---LWSSSG-TGVCVFDS--DGQLLGHIP-TPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             SSCCCSEEECTTSC---EEECCS-SEEEEECT--TSCEEEEEE-CSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             CCCCCeEEECCCCC---EEEecC-CcEEEECC--CCCEEEEEE-CCC-ceeEEEEeCCCCEEEEEcCCe
Confidence            22345678888887   333343 45999997  466777775 333 588999999998887777664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.20  E-value=2.2e-07  Score=68.10  Aligned_cols=222  Identities=9%  Similarity=-0.019  Sum_probs=131.2

Q ss_pred             eEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceee
Q psy6859           6 ITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         6 v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~   82 (261)
                      +..+++++ ++ ++++-..++.|..++.+..  .....+.........+++++++..|+.+ ...+.|.++++.......
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~--~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGG--EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSC--CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCC--CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            45888988 54 4555566789999998764  2222222222456899999875555544 456789999985432222


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeE
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV  162 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  162 (261)
                      ...........+.+.+++..++... .+...+.|..+++.... ...+.. ........+++++++.. ++++....+.|
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~-~~~~~~~I~~~~~dg~~-~~~~~~-~~~~~P~gia~d~~~~~-lyv~d~~~~~I  191 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTD-WNRDNPKIETSHMDGTN-RRILAQ-DNLGLPNGLTFDAFSSQ-LCWVDAGTHRA  191 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEE-CCSSSCEEEEEETTSCC-CEEEEC-TTCSCEEEEEEETTTTE-EEEEETTTTEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEE-CCCCCcEEEEEecCCCC-cEEEEE-CCCCCCcEEEEcCCCCE-EEEEECCCCEE
Confidence            2222212234556776556555441 11114688888886543 222221 12235688999998764 46666778899


Q ss_pred             EEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc-cc
Q psy6859         163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK-TY  241 (261)
Q Consensus       163 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  241 (261)
                      ..+|.. .......+. . ......++.. .+.++++....+.|..+|..+               ++.+..+.... ..
T Consensus       192 ~~~~~~-g~~~~~~~~-~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~---------------g~~~~~i~~g~~~~  252 (267)
T 1npe_A          192 ECLNPA-QPGRRKVLE-G-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI---------------SKEMDTFHPHKQTR  252 (267)
T ss_dssp             EEEETT-EEEEEEEEE-C-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTT---------------TEEEEEECCSSCCC
T ss_pred             EEEecC-CCceEEEec-C-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCC---------------CCceEEEccccccc
Confidence            999986 433333332 2 2334567664 344444555668899999743               45555554322 34


Q ss_pred             eeeeeECCCCc
Q psy6859         242 PSGLSFSPDGN  252 (261)
Q Consensus       242 v~~~~~s~~~~  252 (261)
                      ...+++.|++.
T Consensus       253 p~gi~~~~~~~  263 (267)
T 1npe_A          253 LYGITIALSQC  263 (267)
T ss_dssp             CCCEEEECSCC
T ss_pred             cceeeecCccC
Confidence            78889988864

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.19  E-value=4.7e-12  Score=97.50  Aligned_cols=143  Identities=13%  Similarity=0.076  Sum_probs=74.5

Q ss_pred             CCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCc
Q psy6859          57 NGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTP  136 (261)
Q Consensus        57 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~  136 (261)
                      ++..+++++.|+.|+.||..+|+.+..+.. . +.....+..++..++.    ++.|+.|..||.++++.+..+..... 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-~~~s~p~~~~g~~~v~----~s~dg~l~a~d~~tG~~~w~~~~~~~-   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-PVLQVPTHVEEPAFLP----DPNDGSLYTLGSKNNEGLTKLPFTIP-   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-CSCCCC-----CCEEE----CTTTCCEEEC-----CCSEECSCCHH-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-CceecceEcCCCEEEE----eCCCCEEEEEECCCCceeeeeeccCc-
Confidence            466899999999999999999999888775 2 2222222233433333    37899999999998877655443211 


Q ss_pred             ceEE-EEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccc
Q psy6859         137 LTVE-CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQE  215 (261)
Q Consensus       137 ~~~~-~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  215 (261)
                      ..+. ......++.   +++++.++.++.||.. +++.+..+. .+.    ...++|++..|++++.|+.|+.||.++++
T Consensus        81 ~~~~~sp~~~~~~~---v~~g~~dg~v~a~D~~-tG~~~w~~~-~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           81 ELVQASPCRSSDGI---LYMGKKQDIWYVIDLL-TGEKQQTLS-SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             HHHTTCSCC--------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             cccccCceEecCCE---EEEEeCCCEEEEEECC-CCcEEEEec-CCC----cccccccCCEEEEEecCCEEEEEECCCCC
Confidence            0000 001112222   5667778999999999 899888875 332    24566788889999999999999997653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.19  E-value=1.1e-08  Score=84.76  Aligned_cols=157  Identities=8%  Similarity=-0.071  Sum_probs=97.8

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeecc-c----cceeEEEEeeCCCEEEEEeC------CCcEEEEEccccceee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH-L----GVIHSICTNYNGTLLCTVAS------DKAMKVFDVINFDMIN   82 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~s~~~------dg~v~~wd~~~~~~~~   82 (261)
                      +..|+.++.|+.|..+|..++  +.+..+..+ .    ..+..--...++ .++.++.      ++.|+.+|..+|+.+.
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATG--KEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTC--CEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCC--CEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            457888899999999999887  556555543 1    122221111244 5555543      6899999999999888


Q ss_pred             eeeccCcce--------------------------------eEEEEeecCCceeeeeeecCCC-----------------
Q psy6859          83 MIKLDFTPL--------------------------------TVECIHYLGDAIPTAAVSDQDS-----------------  113 (261)
Q Consensus        83 ~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~s~~~d-----------------  113 (261)
                      .+.......                                ....+.+.++.++..    +.+                 
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~----~~~~~~w~~~~~~~~~gd~~  280 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVG----TGNGSPWSHKVRSPKGGDNL  280 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEE----CCCEESSCHHHHSTTCCCCT
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEE----CCCCccccCCCCCccCCCCe
Confidence            776422110                                123444455555443    333                 


Q ss_pred             --CeEEEEEcCCCceeeEEeecCCc-------ceEEEEEEeCCCC-ceEEEEecCCCeEEEEEccCCCccceeec
Q psy6859         114 --SRVHIYDCKGNDMINMIKLDFTP-------LTVECIHYLGDAI-PTAAVSDQDSSHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       114 --~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  178 (261)
                        +.|..+|.++++.+-.++...+.       .....+....++. ..+++.++.+|.++++|.. +++++..++
T Consensus       281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~-tG~~l~~~~  354 (677)
T 1kb0_A          281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRT-NGKFISAKN  354 (677)
T ss_dssp             TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETT-TCCEEEEEE
T ss_pred             eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECC-CCCEecccc
Confidence              25999999999988777653221       1122223333442 1237788899999999998 888877664

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.18  E-value=8.9e-09  Score=77.80  Aligned_cols=209  Identities=12%  Similarity=0.019  Sum_probs=132.6

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeE
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTV   93 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   93 (261)
                      +..+..++.++.+..++.. +  +....+..+...+.++...+++. ++.++.++.+..+|.. ++....+.........
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~  181 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-G--TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSA  181 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-S--CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred             CCEEEEEecCCEEEEEcCC-C--CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence            4567778888999999987 4  34444444455567777777775 5567788999999988 7777666654443333


Q ss_pred             EEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc
Q psy6859          94 ECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP  173 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  173 (261)
                      .....++ .++..    +  +.+..+| .+++.+.....  ....+.++...+++.   +..++.++.+..+|.  +++.
T Consensus       182 ~~~d~~g-~l~v~----t--~~l~~~d-~~g~~~~~~~~--~~~~~~~~~~~~~g~---l~v~t~~~gl~~~~~--~g~~  246 (330)
T 3hxj_A          182 ASIGKDG-TIYFG----S--DKVYAIN-PDGTEKWNFYA--GYWTVTRPAISEDGT---IYVTSLDGHLYAINP--DGTE  246 (330)
T ss_dssp             CEECTTC-CEEEE----S--SSEEEEC-TTSCEEEEECC--SSCCCSCCEECTTSC---EEEEETTTEEEEECT--TSCE
T ss_pred             eEEcCCC-EEEEE----e--CEEEEEC-CCCcEEEEEcc--CCcceeceEECCCCe---EEEEcCCCeEEEECC--CCCE
Confidence            3333333 34443    4  8899999 66665555443  223466777777765   555666788888874  5566


Q ss_pred             ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCce
Q psy6859         174 LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNK  253 (261)
Q Consensus       174 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  253 (261)
                      +..+. .....+..+.+.+++. |..++.+|.|..+|..                ++.+..+......+.++...++|++
T Consensus       247 ~~~~~-~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~----------------g~~~~~~~~~~~~~~~~~~d~~g~l  308 (330)
T 3hxj_A          247 KWRFK-TGKRIESSPVIGNTDT-IYFGSYDGHLYAINPD----------------GTEKWNFETGSWIIATPVIDENGTI  308 (330)
T ss_dssp             EEEEE-CSSCCCSCCEECTTSC-EEEECTTCEEEEECTT----------------SCEEEEEECSSCCCSCCEECTTCCE
T ss_pred             eEEee-CCCCccccceEcCCCe-EEEecCCCCEEEECCC----------------CcEEEEEEcCCccccceEEcCCCEE
Confidence            66664 3333344556666664 6667778889999852                2333333333456777888788775


Q ss_pred             EEEeecCC
Q psy6859         254 FVTISMDR  261 (261)
Q Consensus       254 l~s~~~Dg  261 (261)
                      .+ ++.+|
T Consensus       309 ~~-gt~~G  315 (330)
T 3hxj_A          309 YF-GTRNG  315 (330)
T ss_dssp             EE-ECTTS
T ss_pred             EE-EcCCC
Confidence            54 55443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.18  E-value=1.1e-08  Score=78.08  Aligned_cols=201  Identities=14%  Similarity=0.030  Sum_probs=115.5

Q ss_pred             cceeEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeeee-------ccCcceeEEEEeecCCceeeeeeecC---CCC
Q psy6859          47 GVIHSICTNYNGTLLCTVAS--DKAMKVFDVINFDMINMIK-------LDFTPLTVECIHYLGDAIPTAAVSDQ---DSS  114 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~~~--dg~v~~wd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~---~d~  114 (261)
                      ..+..++++++|+.+++...  ++.++||.+.+++.. .+.       .+......+.+.+++. ++.+- ++.   .+.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D-~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGI-VWMLD-NGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSE-EEEEE-CHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCc-EEEEc-CCCCcCCCC
Confidence            57899999999999888642  343566666555432 221       0112334455555543 44430 110   157


Q ss_pred             eEEEEEcCCCceeeEEeecCC----cceEEEEEEeCCCCceEEEEec---CCCeEEEEEccCCCccceeeccCc------
Q psy6859         115 RVHIYDCKGNDMINMIKLDFT----PLTVECIHYLGDAIPTAAVSDQ---DSSHVHIYDCKGNGTPLHVLDRLH------  181 (261)
Q Consensus       115 ~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~------  181 (261)
                      .|.+||+.+++.+..+.....    ......+++++++.. ++++..   .++.|.+||+. +++..+.+. .|      
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~-~g~~~r~~~-~~~~~~~~  170 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQ-TGLAARVLQ-GYPGIAPE  170 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETT-TCCEEEECT-TCTTTSCC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECC-CCCEEEEec-CCCccccc
Confidence            899999999987777765311    124578889976443 356655   67899999997 665544442 21      


Q ss_pred             -----------------------ccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccccee--ecC
Q psy6859         182 -----------------------TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF--EFA  236 (261)
Q Consensus       182 -----------------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~  236 (261)
                                             ...+..|+|+|+++.|+.+..++. ++|.+..........     ...+...  ...
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~-----~~~~~~~~~~~~  244 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQL-----TDAELGSKIERY  244 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTC-----CHHHHHTTCEEE
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCC-----ChhhhhcceEec
Confidence                                   123688999999998887776653 445443210000000     0000000  111


Q ss_pred             CCccceeeeeECCCCceEEEeec
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      ++......++++++|+++++...
T Consensus       245 g~~g~pdgia~d~~G~l~va~~~  267 (343)
T 2qe8_A          245 SEKPICDGISIDKDHNIYVGDLA  267 (343)
T ss_dssp             EECCSCSCEEECTTCCEEEEEGG
T ss_pred             ccCCCCceEEECCCCCEEEEccC
Confidence            23345677889999887776543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.17  E-value=4.1e-07  Score=68.12  Aligned_cols=226  Identities=10%  Similarity=0.004  Sum_probs=131.2

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC--cEEEEEcccccee
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK--AMKVFDVINFDMI   81 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~v~~wd~~~~~~~   81 (261)
                      ....++|++ ++++++-..++.|..|+.+..   ....+. ....+..+++.++++++++.....  .|..+|..+++..
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            456789998 777777778899999987753   222222 234678999999998666543322  4666777777654


Q ss_pred             eeeeccCc-ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce-eeEEe-------ecCCcceEEEEEEeCCCCceE
Q psy6859          82 NMIKLDFT-PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM-INMIK-------LDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      ........ ......... +..++..   ...++.|..+|..+++. +....       ....-.....+  ++++.. +
T Consensus       109 ~~~~~~~~~~~~g~~~~~-~~~~~v~---d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~-l  181 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLS-DTQYLTA---DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF-L  181 (306)
T ss_dssp             EEEECTTCSCEEEEEESS-SSEEEEE---ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE-E
T ss_pred             EEEeCCCccccCcccccC-CCcEEEE---ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE-E
Confidence            33322111 111122222 2222222   24578898999875421 11000       00011123445  666653 4


Q ss_pred             EEEecCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDT  230 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  230 (261)
                      +++....+.|..||+...++.  ...+.  .......++++++|++.++....+.|.++|..                ++
T Consensus       182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~----------------G~  243 (306)
T 2p4o_A          182 YVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD----------------RS  243 (306)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT----------------CC
T ss_pred             EEEeCCCCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC----------------CC
Confidence            677777899999998722322  22221  11345678999999877776677889999863                22


Q ss_pred             c--eeecCCCccceeeeeEC---CCCceEEEeec
Q psy6859         231 D--LFEFAKNKTYPSGLSFS---PDGNKFVTISM  259 (261)
Q Consensus       231 ~--~~~~~~~~~~v~~~~~s---~~~~~l~s~~~  259 (261)
                      .  +..+......+++++|.   |+++.|+.++.
T Consensus       244 ~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          244 TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            2  22222223567899998   89877766543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.12  E-value=1.2e-07  Score=73.37  Aligned_cols=198  Identities=10%  Similarity=0.052  Sum_probs=118.6

Q ss_pred             eCCCEEEEE-eCCCcEEEEEcccc----ceeeeee-------ccCcceeEEEEeecCCceeeeeee--cCCCCeEEEEEc
Q psy6859          56 YNGTLLCTV-ASDKAMKVFDVINF----DMINMIK-------LDFTPLTVECIHYLGDAIPTAAVS--DQDSSRVHIYDC  121 (261)
Q Consensus        56 ~~~~~l~s~-~~dg~v~~wd~~~~----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s--~~~d~~i~i~d~  121 (261)
                      ++.++|+.. ..++.|.++|+.+.    +..+.++       .....-.-....+++ ..++..-.  |...+.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            777776654 46789999998755    5555552       111111222334555 32222111  123478999999


Q ss_pred             CCCceeeEEeecCCc-ceEEEEEEeCCCCceEEEEec-------------------CCCeEEEEEccCCCccceeeccC-
Q psy6859         122 KGNDMINMIKLDFTP-LTVECIHYLGDAIPTAAVSDQ-------------------DSSHVHIYDCKGNGTPLHVLDRL-  180 (261)
Q Consensus       122 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~~-  180 (261)
                      ++.+.+..+.....+ ..-..+.|+|+...  +++..                   ...+|.+||+. +++.+.++..+ 
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~--mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-~~k~~~tI~vg~  248 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEV--LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-KRKRIHSLTLGE  248 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTE--EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-TTEEEEEEESCT
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCE--EEEccCcCccccccccchhhhhhccCCEEEEEECC-CCcEeeEEecCC
Confidence            999999888754333 22345778999984  44442                   37899999998 78888888622 


Q ss_pred             cccCeEEEEE--cCCCCEEEEEc------CCCeEEEeecccccccCCeeeeeecccccceeec-------CCCccceeee
Q psy6859         181 HTKPVVLIKF--NPIYQVVVSVD------KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF-------AKNKTYPSGL  245 (261)
Q Consensus       181 ~~~~v~~~~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~  245 (261)
                      .......+.|  +|+++++++++      .+++|.+|..+.+.+.....  .+..+.+....+       .+-...+..+
T Consensus       249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v--Idi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV--IEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE--EEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE--EeCCCccccccccccccccccCCCceeEE
Confidence            2234556656  99999887666      46688887765432211111  111111111111       1112457889


Q ss_pred             eECCCCceEEEeec
Q psy6859         246 SFSPDGNKFVTISM  259 (261)
Q Consensus       246 ~~s~~~~~l~s~~~  259 (261)
                      .+||||++|.++..
T Consensus       327 ~lS~DGrfLYVSnr  340 (462)
T 2ece_A          327 DISLDDKFLYLSLW  340 (462)
T ss_dssp             EECTTSCEEEEEET
T ss_pred             EECCCCCEEEEEeC
Confidence            99999999988754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.09  E-value=4.5e-08  Score=81.42  Aligned_cols=156  Identities=8%  Similarity=-0.046  Sum_probs=93.0

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeecc--c---cceeEEEEeeCCCEEEEEe------CCCcEEEEEccccceee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH--L---GVIHSICTNYNGTLLCTVA------SDKAMKVFDVINFDMIN   82 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~s~~------~dg~v~~wd~~~~~~~~   82 (261)
                      +..++.++.|+.|..+|..++  +.+..+...  .   ..+.+--...++. ++.++      .++.|+.||..+|+.+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG--~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W  197 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTG--QRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAW  197 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTC--CEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CCEEEEEccCCEEEEEECCCC--CEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence            457888899999999999887  555444321  1   1111111112454 44443      36899999999999887


Q ss_pred             eeeccC-cc------------------------------eeEEEEeecCCceeeeeeecCCCC-----------------
Q psy6859          83 MIKLDF-TP------------------------------LTVECIHYLGDAIPTAAVSDQDSS-----------------  114 (261)
Q Consensus        83 ~~~~~~-~~------------------------------~~~~~~~~~~~~~~~~~~s~~~d~-----------------  114 (261)
                      .+.... .+                              .....+.+..+.++..    +.++                 
T Consensus       198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~----~~~g~~w~~~~~~~~~gd~~y  273 (689)
T 1yiq_A          198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIG----VGNGSLWDPKWRSQAKGDNLF  273 (689)
T ss_dssp             EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEE----CCCEESSCHHHHHTTCSCCTT
T ss_pred             EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEe----CCCCCccccCCCCCCCCCcee
Confidence            765211 00                              0123444445555443    4443                 


Q ss_pred             --eEEEEEcCCCceeeEEeecCCc-------ceEEEEEEeCCCC-ceEEEEecCCCeEEEEEccCCCccceee
Q psy6859         115 --RVHIYDCKGNDMINMIKLDFTP-------LTVECIHYLGDAI-PTAAVSDQDSSHVHIYDCKGNGTPLHVL  177 (261)
Q Consensus       115 --~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~  177 (261)
                        .|..+|.++++.+-.++...+.       ..........++. ..+++.++.+|.++++|.+ +++++...
T Consensus       274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~-tG~~l~~~  345 (689)
T 1yiq_A          274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRA-TGELLSAK  345 (689)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT-TCCEEEEE
T ss_pred             eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECC-CCCEeccc
Confidence              4999999999988777653211       1111112222332 1247788899999999998 88887443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.07  E-value=2.3e-07  Score=71.57  Aligned_cols=181  Identities=11%  Similarity=0.048  Sum_probs=113.0

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcce--
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPL--   91 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~--   91 (261)
                      +..++.++.++.|..+|.+++  +.+............... .+ ..++.++.++.|..+|..+++.+..........  
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG--~~~W~~~~~~~~~~~p~~-~~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~  178 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDG--TVAWQTKVAGEALSRPVV-SD-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL  178 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTC--CEEEEEECSSCCCSCCEE-ET-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred             CCEEEEEcCCCEEEEEECCCC--CEEEEEeCCCceEcCCEE-EC-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence            567788888999999999887  444444433221122222 23 478888899999999999999888776433211  


Q ss_pred             ---eEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcce--------E-EEEEEeCCCCceEEEEecCC
Q psy6859          92 ---TVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLT--------V-ECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        92 ---~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~d  159 (261)
                         ....+  .+..++..    +.++.+..+|.++++.+...........        + ...... ++.   ++.++.+
T Consensus       179 ~~~~~~~~--~~~~v~~g----~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~---v~~~~~~  248 (376)
T 3q7m_A          179 RGESAPTT--AFGAAVVG----GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-NGV---VFALAYN  248 (376)
T ss_dssp             CCCCCCEE--ETTEEEEC----CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-TTE---EEEECTT
T ss_pred             cCCCCcEE--ECCEEEEE----cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-CCE---EEEEecC
Confidence               11111  13344443    6789999999999988766654321100        0 001111 221   5566678


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      +.+..+|.+ +++.+.... .  .....+..  ++..|+.++.++.|..+|..++
T Consensus       249 g~l~~~d~~-tG~~~w~~~-~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG  297 (376)
T 3q7m_A          249 GNLTALDLR-SGQIMWKRE-L--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG  297 (376)
T ss_dssp             SCEEEEETT-TCCEEEEEC-C--CCEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred             cEEEEEECC-CCcEEeecc-C--CCCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence            999999998 888877664 2  22344443  3556777778899999998664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.05  E-value=1.6e-07  Score=72.45  Aligned_cols=180  Identities=9%  Similarity=0.067  Sum_probs=111.9

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccce-----eEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccC
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVI-----HSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDF   88 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~   88 (261)
                      +..++.++.++.|..+|..++  +.+..+.......     ......  +..++.+..++.+..+|..+++.+.......
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~  218 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADG--AVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ  218 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTC--CEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred             CCEEEEEcCCCeEEEEECCCC--cEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence            456778888999999999877  4444443221111     112222  3467888889999999999998887765432


Q ss_pred             ccee----------EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          89 TPLT----------VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        89 ~~~~----------~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ....          .... ..+..++..    +.++.+..+|.++++.+......    ....+....+.    +..++.
T Consensus       219 ~~~~~~~~~~~~~~~~p~-~~~~~v~~~----~~~g~l~~~d~~tG~~~w~~~~~----~~~~~~~~~~~----l~~~~~  285 (376)
T 3q7m_A          219 ATGSTEIDRLSDVDTTPV-VVNGVVFAL----AYNGNLTALDLRSGQIMWKRELG----SVNDFIVDGNR----IYLVDQ  285 (376)
T ss_dssp             -----------CCCCCCE-EETTEEEEE----CTTSCEEEEETTTCCEEEEECCC----CEEEEEEETTE----EEEEET
T ss_pred             CCCCcccccccccCCCcE-EECCEEEEE----ecCcEEEEEECCCCcEEeeccCC----CCCCceEECCE----EEEEcC
Confidence            1100          0001 123444444    67899999999999877655432    22334444332    555667


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ++.+..+|.. +++.+..........+.....  .+..|+.++.+|.|..+|..+
T Consensus       286 ~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          286 NDRVMALTID-GGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             TCCEEEEETT-TCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred             CCeEEEEECC-CCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence            8999999998 888776664111222222233  245788888899999999855

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.03  E-value=5.1e-09  Score=79.15  Aligned_cols=175  Identities=7%  Similarity=-0.051  Sum_probs=108.2

Q ss_pred             EcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcc
Q psy6859          11 VTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTP   90 (261)
Q Consensus        11 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~   90 (261)
                      +..+..+..++.++.|..|| .++  +....+......+.++...+++. +..++.+  +..+|. +++.+..+......
T Consensus        27 ~d~~g~l~v~t~~~~l~~~d-~~g--~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~   99 (330)
T 3hxj_A           27 LAKNGTIYLGSSNKNLYAIN-TDG--SVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAI   99 (330)
T ss_dssp             ECTTSCEECSSTTTTTEEEC-TTS--CEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC----
T ss_pred             EccCCeEEEEcCCCEEEEEC-CCC--cEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCc
Confidence            33444677788889999999 665  44444444444566777766664 5555544  888886 66655554433222


Q ss_pred             eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCC
Q psy6859          91 LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN  170 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  170 (261)
                      .....+.  +..++..    +.++.+..+|.. ++........  ...+.++...+++.   +..++.++.|..+|..  
T Consensus       100 ~~~~~~~--~~~l~v~----t~~~~l~~~d~~-g~~~~~~~~~--~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~--  165 (330)
T 3hxj_A          100 VSDFTIF--EDILYVT----SMDGHLYAINTD-GTEKWRFKTK--KAIYATPIVSEDGT---IYVGSNDNYLYAINPD--  165 (330)
T ss_dssp             -CCEEEE--TTEEEEE----CTTSEEEEECTT-SCEEEEEECS--SCCCSCCEECTTSC---EEEECTTSEEEEECTT--
T ss_pred             ccCceEE--CCEEEEE----ecCCEEEEEcCC-CCEEEEEcCC--CceeeeeEEcCCCE---EEEEcCCCEEEEECCC--
Confidence            2222222  4455554    678999999988 6655555432  22344555666665   5566778999999985  


Q ss_pred             CccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859         171 GTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       171 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      ++.+..+. .....+.++...+++.+.+. +  +.|..+|
T Consensus       166 g~~~~~~~-~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d  201 (330)
T 3hxj_A          166 GTEKWRFK-TNDAITSAASIGKDGTIYFG-S--DKVYAIN  201 (330)
T ss_dssp             SCEEEEEE-CSSCCCSCCEECTTCCEEEE-S--SSEEEEC
T ss_pred             CCEeEEEe-cCCCceeeeEEcCCCEEEEE-e--CEEEEEC
Confidence            55555554 44556677788788875544 3  6788888

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.99  E-value=2.1e-06  Score=64.66  Aligned_cols=197  Identities=16%  Similarity=0.041  Sum_probs=112.8

Q ss_pred             eEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee-----------------ccccceeEEEEee-CCCEEEEEeC
Q psy6859           6 ITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR-----------------SHLGVIHSICTNY-NGTLLCTVAS   66 (261)
Q Consensus         6 v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~-~~~~l~s~~~   66 (261)
                      ..++++.+ +++++++..++.|..|+..+..........                 .....+..+++.+ +++ |+.+..
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence            45678888 777888888999999988764222211100                 0113468899997 564 555555


Q ss_pred             CCcEEEEEccccceeeeeec--c---CcceeEEEEee-cCCceeeeee-------------ecCCCCeEEEEEcCCCcee
Q psy6859          67 DKAMKVFDVINFDMINMIKL--D---FTPLTVECIHY-LGDAIPTAAV-------------SDQDSSRVHIYDCKGNDMI  127 (261)
Q Consensus        67 dg~v~~wd~~~~~~~~~~~~--~---~~~~~~~~~~~-~~~~~~~~~~-------------s~~~d~~i~i~d~~~~~~~  127 (261)
                      .+.+..+|..+++. ..+..  .   ......+.+.+ ++...++-..             .+..++.|..+|..+++..
T Consensus       100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  178 (322)
T 2fp8_A          100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT  178 (322)
T ss_dssp             TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred             CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence            55688888765532 22210  1   11123445555 5543322100             0122467888888766543


Q ss_pred             eEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcC---
Q psy6859         128 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDK---  202 (261)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---  202 (261)
                      .......   ....+++++++.. ++++....+.|..|++. ...  ....+. .... ...++++++|++.++...   
T Consensus       179 ~~~~~~~---~p~gia~~~dg~~-lyv~d~~~~~I~~~~~~-~~~~~~~~~~~-~~~g-P~gi~~d~~G~l~va~~~~~~  251 (322)
T 2fp8_A          179 LLLKELH---VPGGAEVSADSSF-VLVAEFLSHQIVKYWLE-GPKKGTAEVLV-KIPN-PGNIKRNADGHFWVSSSEELD  251 (322)
T ss_dssp             EEEEEES---CCCEEEECTTSSE-EEEEEGGGTEEEEEESS-STTTTCEEEEE-ECSS-EEEEEECTTSCEEEEEEEETT
T ss_pred             EeccCCc---cCcceEECCCCCE-EEEEeCCCCeEEEEECC-CCcCCccceEE-eCCC-CCCeEECCCCCEEEEecCccc
Confidence            3222211   2356889999874 35565667899999986 321  112221 1123 788999999986555443   


Q ss_pred             -------CCeEEEeec
Q psy6859         203 -------AGILEYWSG  211 (261)
Q Consensus       203 -------dg~i~iwd~  211 (261)
                             .+.|..+|.
T Consensus       252 ~~~~~~~~~~v~~~d~  267 (322)
T 2fp8_A          252 GNMHGRVDPKGIKFDE  267 (322)
T ss_dssp             SSTTSCEEEEEEEECT
T ss_pred             ccccCCCccEEEEECC
Confidence                   456777775

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.93  E-value=1.5e-07  Score=75.27  Aligned_cols=196  Identities=14%  Similarity=0.079  Sum_probs=131.4

Q ss_pred             CeEEEEE-c-C-CCeEEEec------------------CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEE
Q psy6859           5 PITHVVV-T-K-TDFVITAS------------------NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCT   63 (261)
Q Consensus         5 ~v~~~~~-~-~-~~~l~s~~------------------~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s   63 (261)
                      ....+++ + | ++++++++                  .++.+.+.|.++.  +...++.--. ....++++|+|+++++
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~--~v~~qI~Vgg-~pd~~~~spdGk~~~v  211 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKW--EVAWQVLVSG-NLDNCDADYEGKWAFS  211 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTT--EEEEEEEESS-CCCCEEECSSSSEEEE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCC--eEEEEEEeCC-CccceEECCCCCEEEE
Confidence            4567777 4 7 77777773                  3567899999886  6666665322 4577889999999998


Q ss_pred             EeCCC--------------------------------------cEEEEEccc--cce-eeeeeccCcceeEEEEeecCCc
Q psy6859          64 VASDK--------------------------------------AMKVFDVIN--FDM-INMIKLDFTPLTVECIHYLGDA  102 (261)
Q Consensus        64 ~~~dg--------------------------------------~v~~wd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~  102 (261)
                      ++.+.                                      .|.+.|..+  ++. +..+..... ...+.++|++++
T Consensus       212 t~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~-PhGv~~sPDGk~  290 (595)
T 1fwx_A          212 TSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKH  290 (595)
T ss_dssp             EESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESS-CCCEEECTTSSE
T ss_pred             EecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCC-ceEEEEcCCCCE
Confidence            88553                                      366777766  433 445544433 346778889987


Q ss_pred             eeeeeeecCCCCeEEEEEcCCCc------------eeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCC
Q psy6859         103 IPTAAVSDQDSSRVHIYDCKGND------------MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN  170 (261)
Q Consensus       103 ~~~~~~s~~~d~~i~i~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  170 (261)
                      ++..   +..+.+|.++|+.+.+            ....+..   ......++|+|++ + ++++.-.++.|..||+. .
T Consensus       291 v~V~---~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v---G~gP~h~aF~~dG-~-aY~t~~ldsqV~kwdi~-~  361 (595)
T 1fwx_A          291 LCVA---GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL---GLGPLHTAFDGRG-N-AYTSLFLDSQVVKWNIE-D  361 (595)
T ss_dssp             EEEE---CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC---CSCEEEEEECTTS-E-EEEEETTTTEEEEEEHH-H
T ss_pred             EEEe---CCCCCeEEEEECcccccccccccCcccceEEEcCC---CCCcceEEECCCC-e-EEEEEecCCcEEEEEhh-H
Confidence            7654   4678999999998653            2223322   2356889999999 4 57777889999999997 5


Q ss_pred             ----------CccceeeccCcccCe-----EEEEEcCCCCEEEEEc---CCCeE----------EEeecccc
Q psy6859         171 ----------GTPLHVLDRLHTKPV-----VLIKFNPIYQVVVSVD---KAGIL----------EYWSGYKQ  214 (261)
Q Consensus       171 ----------~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~---~dg~i----------~iwd~~~~  214 (261)
                                .+.+..+. .|..+-     .++.++|||++|++..   .|..+          .++|+..+
T Consensus       362 a~~~~~g~~~~~vi~kid-V~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          362 AIRAYAGEKVDPIKDKLD-VHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             HHHHHHTCSCCCEEEEEE-CSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred             hhhhhcccccceeEEEee-cccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence                      44566665 443321     2235689999998865   24321          77888543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=1e-06  Score=73.15  Aligned_cols=159  Identities=10%  Similarity=0.011  Sum_probs=101.3

Q ss_pred             EEEEeeCCCEEEEEeCCC-------------------cEEEEEccccceeeeeeccC---------cceeEEEEeecCCc
Q psy6859          51 SICTNYNGTLLCTVASDK-------------------AMKVFDVINFDMINMIKLDF---------TPLTVECIHYLGDA  102 (261)
Q Consensus        51 ~~~~~~~~~~l~s~~~dg-------------------~v~~wd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~  102 (261)
                      .+++.++...++.++.++                   .|..+|..+|+.+..++...         .+.....+..+++.
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            467888777888887766                   39999999999988877532         12222233334432


Q ss_pred             eeeeeeecCCCCeEEEEEcCCCceeeEEeecCCc----------ceE------------------------EEEEEeCCC
Q psy6859         103 IPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTP----------LTV------------------------ECIHYLGDA  148 (261)
Q Consensus       103 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~----------~~~------------------------~~~~~~~~~  148 (261)
                      . -.++.++.+|.+.++|.++++.+........+          ..+                        ..++++|+.
T Consensus       314 ~-~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          314 R-KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             E-EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             E-EEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence            1 11233489999999999999887544322100          000                        014566654


Q ss_pred             CceEEE----------------------------------EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC
Q psy6859         149 IPTAAV----------------------------------SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY  194 (261)
Q Consensus       149 ~~~~~~----------------------------------~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  194 (261)
                      ...++-                                  ....+|.|..||+. +++.+.+++  ...+.....+...+
T Consensus       393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~-tG~~~W~~~--~~~~~~~~~~~t~g  469 (668)
T 1kv9_A          393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV-KQKAAWKVP--YPTHWNGGTLSTAG  469 (668)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT-TTEEEEEEE--ESSSCCCCEEEETT
T ss_pred             CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC-CCcEEEEcc--CCCCCcCceeEeCC
Confidence            422110                                  11234889999998 998888775  33334444455577


Q ss_pred             CEEEEEcCCCeEEEeeccc
Q psy6859         195 QVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       195 ~~l~~~~~dg~i~iwd~~~  213 (261)
                      .+++.++.|+.++.||.++
T Consensus       470 g~vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          470 NLVFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             TEEEEECTTSEEEEEETTT
T ss_pred             CEEEEECCcccchhhhhhc
Confidence            8888899999999999854

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.84  E-value=2.5e-06  Score=70.81  Aligned_cols=235  Identities=9%  Similarity=-0.014  Sum_probs=120.6

Q ss_pred             EEEEcC-CCeEEEec-CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CC-----CcEEEEEccccc
Q psy6859           8 HVVVTK-TDFVITAS-NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SD-----KAMKVFDVINFD   79 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d-----g~v~~wd~~~~~   79 (261)
                      ++++.. +.+++.|+ .+..+.+||..+.....+..+.... .-.+++..++++.++.|+ .+     ..+.+||..+++
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            456666 78888887 4568999999886444443332211 113455667899999988 34     468999998765


Q ss_pred             eeeee-----eccCcceeEEEEeecCCceeeee-----eecCCCCeEEEEEcCCCceeeEEeecCC-------cceEEEE
Q psy6859          80 MINMI-----KLDFTPLTVECIHYLGDAIPTAA-----VSDQDSSRVHIYDCKGNDMINMIKLDFT-------PLTVECI  142 (261)
Q Consensus        80 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~  142 (261)
                      ....-     ..... .....+..++...+...     +.......+..||..+............       +..-.++
T Consensus       326 W~~~~~~~~~p~~~~-~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av  404 (656)
T 1k3i_A          326 WTSLPNAKVNPMLTA-DKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  404 (656)
T ss_dssp             EEEETTSCSGGGCCC-CTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             ceeCCCccccccccc-cccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence            43320     00000 00000001111111110     0012345788999887764433322111       1122344


Q ss_pred             EEeCCCCceEEEEecCCC-----------eEEEEEccCCCccceee-ccCcccC-eEEEEEcCCCCEEEEEcCC------
Q psy6859         143 HYLGDAIPTAAVSDQDSS-----------HVHIYDCKGNGTPLHVL-DRLHTKP-VVLIKFNPIYQVVVSVDKA------  203 (261)
Q Consensus       143 ~~~~~~~~~~~~~~~~d~-----------~i~i~d~~~~~~~~~~~-~~~~~~~-v~~~~~~~~~~~l~~~~~d------  203 (261)
                      .+...+. .+++.|+.++           .+.+||.. +..-.... ....... -.++...|++++++.|+.+      
T Consensus       405 ~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~v~~yd~~-~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~  482 (656)
T 1k3i_A          405 MYDAVKG-KILTFGGSPDYQDSDATTNAHIITLGEPG-TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE  482 (656)
T ss_dssp             EEETTTT-EEEEECCBSSSSSSBCCCCEEEEECCSTT-SCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             eccCCCC-eEEEEeCCCCCCCCCcCCcceEEEcCCCC-CCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence            4443222 2356665332           67788876 44322211 0011222 2345667899999888854      


Q ss_pred             -----CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         204 -----GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       204 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                           ..+.+||..+++.             +.+..+...........+.|+|+.++.||.
T Consensus       483 ~~~~~~~v~~ydp~t~~W-------------~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          483 DSTPVFTPEIYVPEQDTF-------------YKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCSBCCCCEEEEGGGTEE-------------EECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCcccceEEEcCCCCce-------------eecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                 4578898865322             111111111122234456799999999885

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.83  E-value=2.4e-05  Score=66.47  Aligned_cols=226  Identities=8%  Similarity=0.014  Sum_probs=132.5

Q ss_pred             CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEee------ccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859           4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFR------SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      ..|.++...+...|..|+.++-|..|+..+........-.      -....|.++...++++.|..|+.++-|..+|..+
T Consensus       357 ~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~  436 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS  436 (795)
T ss_dssp             SSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred             CeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence            4688998887445667888888899998765222211100      1235688998888887466677777799999877


Q ss_pred             cceeeeee----ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee----cCCcceEEEEEEeCCCC
Q psy6859          78 FDMINMIK----LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL----DFTPLTVECIHYLGDAI  149 (261)
Q Consensus        78 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  149 (261)
                      ++......    .....+..+....++ .+..+    +. +.+.+||..+++.......    ......+.++...+++.
T Consensus       437 ~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lwig----t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~  510 (795)
T 4a2l_A          437 GQVENFNQRNSQLVNENVYAILPDGEG-NLWLG----TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR  510 (795)
T ss_dssp             CCEEEECTTTSCCSCSCEEEEEECSSS-CEEEE----ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC
T ss_pred             CcEEEeecCCCCcCCCeeEEEEECCCC-CEEEE----ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC
Confidence            65433211    112223333333333 33333    33 5688899887654332211    11234688888888886


Q ss_pred             ceEEEEecCCCeEEEEEccCCCccceeec------cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeee
Q psy6859         150 PTAAVSDQDSSHVHIYDCKGNGTPLHVLD------RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVH  223 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  223 (261)
                         +..|+. +-+..||.. +.+.  .+.      ......|.++..+++|++.++.. .| |..||..++.+.      
T Consensus       511 ---lWigt~-~Gl~~~~~~-~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~------  575 (795)
T 4a2l_A          511 ---LWIGGE-EGLSVFKQE-GLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIK------  575 (795)
T ss_dssp             ---EEEEES-SCEEEEEEE-TTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEE------
T ss_pred             ---EEEEeC-CceEEEeCC-CCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEE------
Confidence               444444 568889987 5543  221      12345789999999998555444 34 788887543210      


Q ss_pred             eecccccceeecCC-CccceeeeeECCCCceEEEe
Q psy6859         224 FESKLDTDLFEFAK-NKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       224 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~  257 (261)
                             ......+ ....|.++...++|++.+++
T Consensus       576 -------~~~~~~gl~~~~i~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          576 -------RYNTTNGLPNNVVYGILEDSFGRLWLST  603 (795)
T ss_dssp             -------EECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred             -------EeCCCCCCchhheEEEEECCCCCEEEEc
Confidence                   0001111 23457777777777765544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.81  E-value=1.2e-05  Score=58.88  Aligned_cols=189  Identities=11%  Similarity=0.052  Sum_probs=111.2

Q ss_pred             eEEEecCCCeEEEEeccCCceee---eEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeeeeccCcce
Q psy6859          16 FVITASNDGHIKFWKKQEEGIEF---VKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMINMIKLDFTPL   91 (261)
Q Consensus        16 ~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~~~~~~~~~~   91 (261)
                      +|+.+.. +.|+.++++......   ...+......+..++|++++..|+.+ ..++.|..+++........+.......
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p   81 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence            4444443 578888887642211   11122223457899999966555554 457899999986554333222222233


Q ss_pred             eEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC--CCeEEEEEccC
Q psy6859          92 TVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD--SSHVHIYDCKG  169 (261)
Q Consensus        92 ~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~  169 (261)
                      ..+.+.+.+..++..   ....+.|.++++...........  .......++++|++..+ +++...  .+.|..+++. 
T Consensus        82 ~~ia~d~~~~~lyv~---d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~i~vd~~~g~l-yv~~~~~~~~~I~~~~~d-  154 (267)
T 1npe_A           82 EGIALDHLGRTIFWT---DSQLDRIEVAKMDGTQRRVLFDT--GLVNPRGIVTDPVRGNL-YWTDWNRDNPKIETSHMD-  154 (267)
T ss_dssp             EEEEEETTTTEEEEE---ETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEETTTTEE-EEEECCSSSCEEEEEETT-
T ss_pred             cEEEEEecCCeEEEE---ECCCCEEEEEEcCCCCEEEEEEC--CCCCccEEEEeeCCCEE-EEEECCCCCcEEEEEecC-
Confidence            455666655555443   24578899999876533222221  12345789999965543 444433  4688888875 


Q ss_pred             CCccceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeeccc
Q psy6859         170 NGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYK  213 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~  213 (261)
                       +.....+....-.....++++|++..| ++-...+.|..+|+..
T Consensus       155 -g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          155 -GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ  198 (267)
T ss_dssp             -SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             -CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence             333333321223457899999987766 4455678899999864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.81  E-value=6.2e-06  Score=67.12  Aligned_cols=187  Identities=11%  Similarity=0.018  Sum_probs=108.5

Q ss_pred             EEEeeCCCEEEEEeCC----------------CcEEEEEccccceeeeeeccCc---------ceeEEEEeecCCceeee
Q psy6859          52 ICTNYNGTLLCTVASD----------------KAMKVFDVINFDMINMIKLDFT---------PLTVECIHYLGDAIPTA  106 (261)
Q Consensus        52 ~~~~~~~~~l~s~~~d----------------g~v~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  106 (261)
                      +++.++...++.+..+                +.|..+|..+++.+..++...+         .........+++... +
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~-~  318 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTP-L  318 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEE-E
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEE-E
Confidence            5566665566665532                3599999999998888764321         111112222443111 1


Q ss_pred             eeecCCCCeEEEEEcCCCceeeEEeecCCc-----------ceE--------------------------EEEEEeCCCC
Q psy6859         107 AVSDQDSSRVHIYDCKGNDMINMIKLDFTP-----------LTV--------------------------ECIHYLGDAI  149 (261)
Q Consensus       107 ~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~-----------~~~--------------------------~~~~~~~~~~  149 (261)
                      .+.++.+|.+.++|.++++.+.........           ..+                          ..++++|+..
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g  398 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR  398 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence            122478999999999999887766543200           011                          1246666655


Q ss_pred             ceEEEEe-----------------------------------cCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCC
Q psy6859         150 PTAAVSD-----------------------------------QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIY  194 (261)
Q Consensus       150 ~~~~~~~-----------------------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  194 (261)
                      .+++.+.                                   ..++.|..||.. +++.+.+++  ....+.+..+...+
T Consensus       399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~-tG~~~W~~~--~~~~~~~~~~~t~g  475 (571)
T 2ad6_A          399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT-TGKAKWTKW--EKFAAWGGTLYTKG  475 (571)
T ss_dssp             EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT-TCCEEEEEE--ESSCCCSBCEEETT
T ss_pred             EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECC-CCCEEEEec--CCCCccceeEEECC
Confidence            3222111                                   135789999998 888888775  33333333333445


Q ss_pred             CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCcc-ceeeeeECCCCceEEEe
Q psy6859         195 QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT-YPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       195 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~  257 (261)
                      ..++.++.||.|+.+|.++               ++.+.++..... .-.-+.+..+|+.++..
T Consensus       476 g~v~~g~~dg~l~a~D~~t---------------G~~lw~~~~~~~~~~~p~~~~~~G~~yv~~  524 (571)
T 2ad6_A          476 GLVWYATLDGYLKALDNKD---------------GKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             TEEEEECTTSEEEEEETTT---------------CCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCC---------------CCEEEEEeCCCCcEeeeEEEEECCEEEEEE
Confidence            6777789999999999854               555555543211 11224455788755543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.76  E-value=4.6e-05  Score=64.70  Aligned_cols=228  Identities=11%  Similarity=0.095  Sum_probs=132.0

Q ss_pred             CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeec-------cccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859           4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRS-------HLGVIHSICTNYNGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~   76 (261)
                      ..|.++...+...|..|+.++-+.+|+..+.  +.......       ....|.++...+++.+.+ |+.+ -|.+||..
T Consensus       215 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~  290 (795)
T 4a2l_A          215 KQIQAILQQSPTRIWVATEGAGLFLINPKTK--EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG  290 (795)
T ss_dssp             CCEEEEEEEETTEEEEEEBSSCEEEEETTTT--EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred             CeeEEEEEcCCCCEEEEECCCCeEEEeCCCC--eEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence            4577777766444555665555888888765  22221111       135689999888886555 4445 58899987


Q ss_pred             ccceeeeee-------ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee----cCCcceEEEEEEe
Q psy6859          77 NFDMINMIK-------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL----DFTPLTVECIHYL  145 (261)
Q Consensus        77 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~  145 (261)
                      +++......       +....+..+....++ .+..+    +.++-|..|+..+.........    ......|.++...
T Consensus       291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~lWig----t~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d  365 (795)
T 4a2l_A          291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQG-GMWLG----TYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED  365 (795)
T ss_dssp             TTEEEEECCCTTSTTSCSSSCEEEEEECTTS-CEEEE----ESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred             CCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-CEEEE----ECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence            665433221       112233333333333 34443    5677888898765543221111    1123468899888


Q ss_pred             CCCCceEEEEecCCCeEEEEEccCCCccceeecc--------CcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc
Q psy6859         146 GDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR--------LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK  217 (261)
Q Consensus       146 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  217 (261)
                      +++.   +..|+.++-|..||.. +++. ..+..        .....|.++...++++.|..|+.++-|..||..++.+.
T Consensus       366 ~~g~---lWiGt~~~Gl~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~  440 (795)
T 4a2l_A          366 KDKN---LWIGTNDGGLNLYNPI-TQRF-TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE  440 (795)
T ss_dssp             TTSC---EEEEESSSCEEEECTT-TCCE-EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             CCCC---EEEEECCCCeEEEcCC-CCcE-EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE
Confidence            8886   6667777789999986 4433 22210        12357899999999885666776667999997643210


Q ss_pred             CCeeeeeecccccceeecCCCccceeeeeECCCCceEEE
Q psy6859         218 FPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  256 (261)
                      .     +...      .-......|.++...++|++.+.
T Consensus       441 ~-----~~~~------~~~l~~~~v~~i~~d~~g~lwig  468 (795)
T 4a2l_A          441 N-----FNQR------NSQLVNENVYAILPDGEGNLWLG  468 (795)
T ss_dssp             E-----ECTT------TSCCSCSCEEEEEECSSSCEEEE
T ss_pred             E-----eecC------CCCcCCCeeEEEEECCCCCEEEE
Confidence            0     0000      00013456788888877775544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.73  E-value=3.3e-06  Score=70.08  Aligned_cols=156  Identities=8%  Similarity=-0.029  Sum_probs=92.5

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccc----cceeEEEEeeCCCEEEEEeC------CCcEEEEEccccceeee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL----GVIHSICTNYNGTLLCTVAS------DKAMKVFDVINFDMINM   83 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~------dg~v~~wd~~~~~~~~~   83 (261)
                      +..++.++.|+.|..+|..++  +.+..+....    ..+..--...++ .++.+..      +|.|..+|..+|+.+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTG--KAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTC--CEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCC--CEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            456788889999999999887  4554443211    111111111244 4555443      58999999999998887


Q ss_pred             eeccC-cce------------------------------eEEEEeecCCceeeeeeecCCCC------------------
Q psy6859          84 IKLDF-TPL------------------------------TVECIHYLGDAIPTAAVSDQDSS------------------  114 (261)
Q Consensus        84 ~~~~~-~~~------------------------------~~~~~~~~~~~~~~~~~s~~~d~------------------  114 (261)
                      +.... .+.                              ....+.+..+.++..    +.++                  
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~----~~~g~~w~~~~~~~~~gd~l~~  269 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVG----TGNGSPWNREVRSPGGGDNLYL  269 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEE----CCCEESSCHHHHSTTCCCCTTT
T ss_pred             ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEe----CCCCCccccCCCCCCCCCceee
Confidence            75311 110                              112344444444433    3333                  


Q ss_pred             -eEEEEEcCCCceeeEEeecCCc-------ceEEEEEEeCCCC-ceEEEEecCCCeEEEEEccCCCccceee
Q psy6859         115 -RVHIYDCKGNDMINMIKLDFTP-------LTVECIHYLGDAI-PTAAVSDQDSSHVHIYDCKGNGTPLHVL  177 (261)
Q Consensus       115 -~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~  177 (261)
                       .|..+|.++++.+-.++...+.       ..........++. ..+++.++.+|.++++|.. +++++...
T Consensus       270 ~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~-tG~~l~~~  340 (668)
T 1kv9_A          270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRT-NGKLISAE  340 (668)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT-TCCEEEEE
T ss_pred             eeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECC-CCCEeccc
Confidence             4999999999988777653211       1122222222332 1247788899999999998 88877443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.73  E-value=3.6e-05  Score=59.54  Aligned_cols=198  Identities=7%  Similarity=-0.064  Sum_probs=117.4

Q ss_pred             CeEEEEEcC-C-CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEE-EEEeCCCcEEEEEcccccee
Q psy6859           5 PITHVVVTK-T-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         5 ~v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ....++|.+ + .++++-...+.|..++.+...  ....+.........+++.+.+..| ++-...+.|.+.++......
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            456788987 4 455565677889888887652  222222222345788998754444 55455678888887543322


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCC-CeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ..+.........+.+.+.+..++..   -... +.|..+++...........  .......++++|++.. ++++-...+
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~t---d~~~~~~I~r~~~dG~~~~~~~~~--~~~~PnGlavd~~~~~-lY~aD~~~~  268 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWT---DWGNTPRIEASSMDGSGRRIIADT--HLFWPNGLTIDYAGRR-MYWVDAKHH  268 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEE---ECSSSCEEEEEETTSCSCEEEECS--SCSCEEEEEEEGGGTE-EEEEETTTT
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEe---ccCCCCEEEEEeCCCCCcEEEEEC--CCCCeeeEEEeCCCCE-EEEEECCCC
Confidence            2222222233455666656555443   1233 7888888876543333221  2224578999987664 466667788


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .|..+|+. .......+. ........|++ ..+.++++-...+.|..++..+
T Consensus       269 ~I~~~d~d-G~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~  318 (386)
T 3v65_B          269 VIERANLD-GSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFT  318 (386)
T ss_dssp             EEEEECTT-SCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEeCC-CCeeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCC
Confidence            99999986 332222232 23445678888 3455556666778888888533

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.70  E-value=2.7e-05  Score=56.20  Aligned_cols=195  Identities=15%  Similarity=0.119  Sum_probs=114.4

Q ss_pred             EeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeeeeccC-cceeEEEEeecCCceeeeeeecCCCCeEEE
Q psy6859          41 HFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMINMIKLDF-TPLTVECIHYLGDAIPTAAVSDQDSSRVHI  118 (261)
Q Consensus        41 ~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i  118 (261)
                      .+.+-.+.+..++|+|++..|+ +...++.|...|.. ++.++.+.... .....+.+..++..+++.    ..++.+.+
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~----E~~~~l~~   95 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISD----ERDYAIYV   95 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEE----TTTTEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEE----CCCCcEEE
Confidence            4455557799999999766555 46678889999986 88888776532 223334444444322222    56788889


Q ss_pred             EEcCCCce---eeEEeec----CCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec------cCcccCe
Q psy6859         119 YDCKGNDM---INMIKLD----FTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD------RLHTKPV  185 (261)
Q Consensus       119 ~d~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~v  185 (261)
                      +++.....   +......    ........++++|.+..++++.......|+.|+-......+..+.      ......+
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence            88775542   2333221    123356899999998764443332222455554110111222221      0123356


Q ss_pred             EEEEEcCCCC-EEEEEcCCCeEEEeecccccccCCeeeeeeccccccee--ecC-CC------ccceeeeeECCCCceEE
Q psy6859         186 VLIKFNPIYQ-VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLF--EFA-KN------KTYPSGLSFSPDGNKFV  255 (261)
Q Consensus       186 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------~~~v~~~~~s~~~~~l~  255 (261)
                      .+++++|... +++.......|..+|...                +.+.  .+. +.      -.....|+|.|+|++.+
T Consensus       176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g----------------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI  239 (255)
T 3qqz_A          176 SGAEFNQQKNTLLVLSHESRALQEVTLVG----------------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI  239 (255)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTTC----------------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred             eeEEEcCCCCeEEEEECCCCeEEEEcCCC----------------CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE
Confidence            8899999655 556677888899999753                2222  222 11      13567899999998665


Q ss_pred             E
Q psy6859         256 T  256 (261)
Q Consensus       256 s  256 (261)
                      +
T Consensus       240 v  240 (255)
T 3qqz_A          240 V  240 (255)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.69  E-value=2.7e-05  Score=63.57  Aligned_cols=169  Identities=10%  Similarity=0.087  Sum_probs=98.4

Q ss_pred             CcEEEEEccccceeeeeeccCcc-------eeEEEEe---ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcc
Q psy6859          68 KAMKVFDVINFDMINMIKLDFTP-------LTVECIH---YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPL  137 (261)
Q Consensus        68 g~v~~wd~~~~~~~~~~~~~~~~-------~~~~~~~---~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~  137 (261)
                      +.|.-+|..+|+.+..++...+.       .......   .+++.. -+++.++.+|.+.++|.++++.+..........
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~-~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIV-KATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEE-EEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEE-EEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            57999999999998887653221       1112222   234321 122345899999999999998877665432000


Q ss_pred             -----------e---------------------E-----------EEEEEeCCCCceEEEE-------------------
Q psy6859         138 -----------T---------------------V-----------ECIHYLGDAIPTAAVS-------------------  155 (261)
Q Consensus       138 -----------~---------------------~-----------~~~~~~~~~~~~~~~~-------------------  155 (261)
                                 .                     .           ..++++|+....++.+                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                       0                     0           0234455443221111                   


Q ss_pred             ------------ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeee
Q psy6859         156 ------------DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVH  223 (261)
Q Consensus       156 ------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  223 (261)
                                  ...+|.|..||+. +++.+.+.+  ...++..-.....+.+++.++.|+.++.||.++          
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~-tG~~~W~~~--~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~t----------  516 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPV-SGKVVWEHK--EHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKS----------  516 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTT-TCCEEEEEE--ESSCCCSCCEEETTTEEEEECTTSEEEEEETTT----------
T ss_pred             eeccceeecCCCCCCcceEEEEECC-CCCEEEEec--CCCCCcccceEeCCCEEEEECCCCcEEEEECCC----------
Confidence                        0136889999998 888887775  222222222223466788899999999999854          


Q ss_pred             eecccccceeecCCCccce-eeeeECCCCceEE
Q psy6859         224 FESKLDTDLFEFAKNKTYP-SGLSFSPDGNKFV  255 (261)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~  255 (261)
                           ++.+.+++...... .-+.+..+|+..+
T Consensus       517 -----G~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          517 -----GKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             -----CCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             -----CCEEEEecCCCCcccCceEEEECCEEEE
Confidence                 66666555422221 2356667887433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.67  E-value=2.3e-05  Score=63.95  Aligned_cols=184  Identities=11%  Similarity=-0.022  Sum_probs=106.0

Q ss_pred             EEEeeCCCEEEEEeCC----------------CcEEEEEccccceeeeeeccCcce---------eEEEEe-ecCCceee
Q psy6859          52 ICTNYNGTLLCTVASD----------------KAMKVFDVINFDMINMIKLDFTPL---------TVECIH-YLGDAIPT  105 (261)
Q Consensus        52 ~~~~~~~~~l~s~~~d----------------g~v~~wd~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~  105 (261)
                      +++.++...++.+..+                +.|..+|..+|+.+..++...+..         ...... .+++.. .
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~-~  324 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKAR-K  324 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEE-E
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEE-E
Confidence            4566666677776654                379999999999988877543211         111121 234321 1


Q ss_pred             eeeecCCCCeEEEEEcCCCceeeEEeecCC----------cc-eE--------------------------EEEEEeCCC
Q psy6859         106 AAVSDQDSSRVHIYDCKGNDMINMIKLDFT----------PL-TV--------------------------ECIHYLGDA  148 (261)
Q Consensus       106 ~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~----------~~-~~--------------------------~~~~~~~~~  148 (261)
                      +++.++.+|.+.++|.++++.+........          .. .+                          ..++++|+.
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  404 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR  404 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence            123348999999999999988776653210          00 00                          123455543


Q ss_pred             CceEEE-----------------------------E--ec------CCCeEEEEEccCCCccceeeccCcccCeEEEEEc
Q psy6859         149 IPTAAV-----------------------------S--DQ------DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN  191 (261)
Q Consensus       149 ~~~~~~-----------------------------~--~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  191 (261)
                      ..+++.                             .  .+      ..|.|..||+. +++.+.+.+  +..+...-.+.
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~-tG~~~W~~~--~~~~~~~g~~~  481 (599)
T 1w6s_A          405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAI-TGDYKWEKM--ERFAVWGGTMA  481 (599)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTT-TCCEEEEEE--ESSCCCSBCEE
T ss_pred             CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECC-CCCEEeEec--CCCCccCcceE
Confidence            321110                             0  01      35789999998 888887774  22222221223


Q ss_pred             CCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCcc-ceeeeeECCCCceE
Q psy6859         192 PIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT-YPSGLSFSPDGNKF  254 (261)
Q Consensus       192 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l  254 (261)
                      ..+.+++.++.|+.++.||.++               ++.+.+++.... ...-+.+..+|+..
T Consensus       482 tagg~vf~gt~dg~l~A~D~~t---------------G~~lW~~~l~~g~~~~P~~y~~~G~qy  530 (599)
T 1w6s_A          482 TAGDLVFYGTLDGYLKARDSDT---------------GDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (599)
T ss_dssp             ETTTEEEEECTTSEEEEEETTT---------------CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ecCCEEEEECCCCeEEEEECCC---------------CCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence            3566777799999999999954               555655543221 11235566677643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.63  E-value=2.3e-05  Score=63.81  Aligned_cols=159  Identities=6%  Similarity=-0.116  Sum_probs=91.2

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEee--cccc--ceeEEEEeeCCCEEEEEeC------CCcEEEEEccccceeee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFR--SHLG--VIHSICTNYNGTLLCTVAS------DKAMKVFDVINFDMINM   83 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~~~--~v~~~~~~~~~~~l~s~~~------dg~v~~wd~~~~~~~~~   83 (261)
                      +..++.++.|+.+..+|..++  +.+....  .+..  .+.+--...++ .++.++.      ++.|..+|..+++.+..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG--~~~W~~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTG--KINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTC--CEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCC--CEEEEecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            456778888999999999887  4444333  2211  22211111244 5555554      78999999999998887


Q ss_pred             eeccCcce--------------------------------------eEEEEeecCCceeeeeeecC----------CC--
Q psy6859          84 IKLDFTPL--------------------------------------TVECIHYLGDAIPTAAVSDQ----------DS--  113 (261)
Q Consensus        84 ~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~s~~----------~d--  113 (261)
                      +.......                                      ....+.+....++..  ++.          .+  
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~--~g~~~~~~~~~~~gd~~  269 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYG--SGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEE--CCCCSCSCGGGSCSCCT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEE--CCCCccccCCccCCCce
Confidence            66432110                                      012222333333322  110          11  


Q ss_pred             --CeEEEEEcCCCceeeEEeecCCc-------ceEEEEEEeCCCCc-eEEEEecCCCeEEEEEccCCCccceeec
Q psy6859         114 --SRVHIYDCKGNDMINMIKLDFTP-------LTVECIHYLGDAIP-TAAVSDQDSSHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       114 --~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~  178 (261)
                        +.|..+|.++++.+-.++...+.       ....-+....++.. .+++.++.+|.++++|.. +++++..++
T Consensus       270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~-tG~~~w~~~  343 (571)
T 2ad6_A          270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE-NGNLIVAEK  343 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT-TCCEEEEEE
T ss_pred             eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC-CCCEEeeec
Confidence              36999999999988777643211       11111222234531 235667889999999998 888876654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.62  E-value=0.0001  Score=62.55  Aligned_cols=226  Identities=12%  Similarity=0.066  Sum_probs=128.7

Q ss_pred             CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEe-------eccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859           4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHF-------RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~   76 (261)
                      ..|.++...+...|..|+.++-|..++............       ......|.++...++++ |..|+.++-|..||..
T Consensus       313 ~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~  391 (781)
T 3v9f_A          313 ASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENG  391 (781)
T ss_dssp             SCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETT
T ss_pred             CeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECC
Confidence            568888888844566778778888888775422222110       00235688888887775 5556666678899976


Q ss_pred             ccceeeee---eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee-cCCcceEEEEEEeCCCCceE
Q psy6859          77 NFDMINMI---KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-DFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        77 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  152 (261)
                      +++.....   ......+..+.... ...+...    +.++.+..+|.++++... +.. ......+.++...+++.   
T Consensus       392 ~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWig----t~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~---  462 (781)
T 3v9f_A          392 KRVAIYNKENRELLSNSVLCSLKDS-EGNLWFG----TYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYEDKNKK---  462 (781)
T ss_dssp             EEEEECC-----CCCSBEEEEEECT-TSCEEEE----ETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEECTTSE---
T ss_pred             CCeEEEccCCCCCCCcceEEEEECC-CCCEEEE----eccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEECCCCC---
Confidence            55432211   11112222222222 3344443    556778889987764332 221 12234688888887775   


Q ss_pred             EEEecCCCeEEEEEccCCCccceeeccCc-----ccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLDRLH-----TKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESK  227 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  227 (261)
                      +..|+. +-|..||.. +++...... ..     ...|.++...++|++.+....+| |..||..++.+.          
T Consensus       463 lwigt~-~Gl~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~----------  528 (781)
T 3v9f_A          463 IWIGTH-AGVFVIDLA-SKKVIHHYD-TSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR----------  528 (781)
T ss_dssp             EEEEET-TEEEEEESS-SSSCCEEEC-TTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE----------
T ss_pred             EEEEEC-CceEEEeCC-CCeEEeccc-CcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE----------
Confidence            444444 568899986 544332221 11     46789999999988555444355 777887542110          


Q ss_pred             cccceeecC-CCccceeeeeECCCCceEEE
Q psy6859         228 LDTDLFEFA-KNKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       228 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s  256 (261)
                         ...... .....|.++...++|++.++
T Consensus       529 ---~~~~~~~l~~~~i~~i~~d~~g~lWi~  555 (781)
T 3v9f_A          529 ---KFNQYEGFCSNTINQIYRSSKGQMWLA  555 (781)
T ss_dssp             ---EECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred             ---EccCCCCCCCCeeEEEEECCCCCEEEE
Confidence               000001 12456788888888875554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.61  E-value=2.3e-05  Score=59.03  Aligned_cols=185  Identities=9%  Similarity=0.005  Sum_probs=104.6

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeecc--------------------CcceeEEEEeecCCceeeee
Q psy6859          48 VIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLD--------------------FTPLTVECIHYLGDAIPTAA  107 (261)
Q Consensus        48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~  107 (261)
                      ...+++|.+++++++++..++.|..|+..+++.. .+...                    ......+.+.+....++.+ 
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-
Confidence            4577889999987888888899999988655432 22110                    0112334454423344443 


Q ss_pred             eecCCCCeEEEEEcCCCceeeEEeec---CCcceEEEEEEeC-CCCceEEEEecC-----------------CCeEEEEE
Q psy6859         108 VSDQDSSRVHIYDCKGNDMINMIKLD---FTPLTVECIHYLG-DAIPTAAVSDQD-----------------SSHVHIYD  166 (261)
Q Consensus       108 ~s~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------d~~i~i~d  166 (261)
                         ...+.+..+|..++.. ..+...   ........+.+.+ ++.  ++++...                 ++.|..||
T Consensus        98 ---d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           98 ---DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             ---ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             ---ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEEEe
Confidence               3445588888775532 222111   0112457788999 885  2444321                 36788888


Q ss_pred             ccCCCccceeeccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeee
Q psy6859         167 CKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGL  245 (261)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  245 (261)
                      .. +++.....  ..-...+.++++|+++.|+.+ ...+.|..|++.....          ...+.+..+.   + ...+
T Consensus       172 ~~-~~~~~~~~--~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~----------~~~~~~~~~~---g-P~gi  234 (322)
T 2fp8_A          172 PS-TKETTLLL--KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK----------GTAEVLVKIP---N-PGNI  234 (322)
T ss_dssp             TT-TTEEEEEE--EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT----------TCEEEEEECS---S-EEEE
T ss_pred             CC-CCEEEEec--cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC----------CccceEEeCC---C-CCCe
Confidence            75 44432222  222345679999999866554 5678899999864210          0001111111   2 5677


Q ss_pred             eECCCCceEEEe
Q psy6859         246 SFSPDGNKFVTI  257 (261)
Q Consensus       246 ~~s~~~~~l~s~  257 (261)
                      ++.++|++.++.
T Consensus       235 ~~d~~G~l~va~  246 (322)
T 2fp8_A          235 KRNADGHFWVSS  246 (322)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EECCCCCEEEEe
Confidence            888888765554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.59  E-value=8.7e-05  Score=56.56  Aligned_cols=198  Identities=7%  Similarity=-0.049  Sum_probs=117.2

Q ss_pred             CeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEcccccee
Q psy6859           5 PITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         5 ~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ....++|++ ++ ++++-...+.|..++.+...  ....+.........+++.+.+. ++++-...+.|.+.++......
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCC--ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            357888987 44 55555677888888887652  2222222223457899987544 4455556778999998643322


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCC-CeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ..+.........+.+.+.+..++..   -... +.|..+++........+..  .-.....++++|+... ++++-...+
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~t---d~~~~~~I~r~~~dG~~~~~~~~~--~~~~PnGla~d~~~~~-lY~aD~~~~  225 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWT---DWGNTPRIEASSMDGSGRRIIADT--HLFWPNGLTIDYAGRR-MYWVDAKHH  225 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEE---ECSSSCEEEEEETTSCSCEESCCS--SCSCEEEEEEETTTTE-EEEEETTTT
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEe---ccCCCCEEEEEeCCCCCcEEEEEC--CCCCcceEEEeCCCCE-EEEEECCCC
Confidence            2222222233456666655555443   1334 7888888876533222221  2234688999987664 466666788


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .|..+|+. .......+. ........+++ ..+.+.++-...+.|..++..+
T Consensus       226 ~I~~~~~d-G~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~  275 (349)
T 3v64_C          226 VIERANLD-GSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFT  275 (349)
T ss_dssp             EEEEEETT-SCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEeCC-CCceEEEEe-CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccC
Confidence            99999986 332222232 23445678888 3455556666778888887433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.59  E-value=6e-05  Score=54.39  Aligned_cols=196  Identities=10%  Similarity=0.098  Sum_probs=119.3

Q ss_pred             CCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           4 SPITHVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         4 ~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      +.+..++|+| ++ ++++...++.|...|.. +  +.++.+. .-......|++.+++.++++.-.++.+.++++.....
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g--~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G--DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE  103 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-C--CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C--CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence            5689999998 55 55556778888888887 4  4555542 1124578889998887777766778899998765432


Q ss_pred             ---eeeeecc------CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC---CceeeEEee-----cCCcceEEEEE
Q psy6859          81 ---INMIKLD------FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG---NDMINMIKL-----DFTPLTVECIH  143 (261)
Q Consensus        81 ---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---~~~~~~~~~-----~~~~~~~~~~~  143 (261)
                         +......      ......+++.+.++.++.+    .......+|.++.   ...+..+..     .........++
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va----~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFF----KEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEE----EESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEE----ECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence               2222211      1223567777777677665    3333334444331   111222211     11122457899


Q ss_pred             EeCCCCceEEEEecCCCeEEEEEccCCCccceeecc--Cc------ccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859         144 YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR--LH------TKPVVLIKFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      ++|....+ ++.......+..+|..  ++++..+..  +.      -.....|+|.|+|+ |+..++-+.+..+.
T Consensus       180 ~dp~tg~l-liLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          180 FNQQKNTL-LVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             EETTTTEE-EEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred             EcCCCCeE-EEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence            99987754 4445668889999975  556555541  11      13668999999998 44446666555554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.54  E-value=0.00017  Score=61.12  Aligned_cols=198  Identities=11%  Similarity=0.029  Sum_probs=114.7

Q ss_pred             CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEE-eeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKH-FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      ..|.++...+...|..|+.++-|..++..+........ -......|.++...+++++. .|+.++-+..++..+++...
T Consensus       363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~  441 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQI  441 (781)
T ss_dssp             SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEEE
T ss_pred             cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEEE
Confidence            46888888873446667766778888876531111100 01233568888888777654 46666678889887665433


Q ss_pred             eeeccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCCceeeEEeec---CCcceEEEEEEeCCCCceEEEEecC
Q psy6859          83 MIKLDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD---FTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ..........+..+..+ ...+..+    +. +.+..||..+++........   .....+.++...+++.   +..|+.
T Consensus       442 ~~~~~~~~~~v~~i~~d~~g~lwig----t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~---lWigt~  513 (781)
T 3v9f_A          442 IELEKNELLDVRVFYEDKNKKIWIG----TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR---FWIGTF  513 (781)
T ss_dssp             CCSTTTCCCCEEEEEECTTSEEEEE----ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC---EEEEES
T ss_pred             eccCCCCCCeEEEEEECCCCCEEEE----EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC---EEEEEc
Confidence            21111111223333333 2334433    34 67889998876543332211   1134688888888886   445555


Q ss_pred             CCeEEEEEccCCCccceeec---cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         159 SSHVHIYDCKGNGTPLHVLD---RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .+-+..||.. +.+ +..+.   ......|.++...++|.+.++.. +|.+..||..+
T Consensus       514 ~~Gl~~~~~~-~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~  568 (781)
T 3v9f_A          514 GGGVGIYTPD-MQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARN  568 (781)
T ss_dssp             SSCEEEECTT-CCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTT
T ss_pred             CCCEEEEeCC-CCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCC
Confidence            4457888876 443 33332   01245789999999988555544 67548888754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.53  E-value=0.00017  Score=56.67  Aligned_cols=199  Identities=9%  Similarity=-0.045  Sum_probs=110.3

Q ss_pred             CeEEEEEcCC---CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC---Cc-EEEEEccc
Q psy6859           5 PITHVVVTKT---DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD---KA-MKVFDVIN   77 (261)
Q Consensus         5 ~v~~~~~~~~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~-v~~wd~~~   77 (261)
                      .-..|+|.|.   ..|..+...+.|+.++..++  .... +.........++++++++++++....   .. +...+...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g--~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ--YVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT--EEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCC--EEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence            3457888862   44554444488999998765  3332 22234557899999999944443311   12 33333222


Q ss_pred             cce-eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859          78 FDM-INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus        78 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                      +.. ...+.....+ ..+.+.+....++..   -..++.|..+|..++.....+...........++++|++.. ++++-
T Consensus       217 ~~~~~~~~~~~~~P-~giavd~~~G~lyv~---d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~-LYvad  291 (433)
T 4hw6_A          217 GFTERLSLCNARGA-KTCAVHPQNGKIYYT---RYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW-AYIIY  291 (433)
T ss_dssp             TTCCEEEEEECSSB-CCCEECTTTCCEEEC---BTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE-EEEEE
T ss_pred             CeeccccccccCCC-CEEEEeCCCCeEEEE---ECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE-EEEEe
Confidence            111 0111111122 234555533333332   14677899999887765233222111222346999999974 46666


Q ss_pred             cCCCeEEEEEccCCCccc---eeecc--------------CcccCeEEEEE---------cCCCCEEEEEcCCCeEEEee
Q psy6859         157 QDSSHVHIYDCKGNGTPL---HVLDR--------------LHTKPVVLIKF---------NPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       157 ~~d~~i~i~d~~~~~~~~---~~~~~--------------~~~~~v~~~~~---------~~~~~~l~~~~~dg~i~iwd  210 (261)
                      ...+.|+.+++......+   ..+..              ..-.....+++         .+++.+.++-...+.|+.++
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            778899998875211111   11210              01124677999         77777777777788899998


Q ss_pred             c
Q psy6859         211 G  211 (261)
Q Consensus       211 ~  211 (261)
                      .
T Consensus       372 ~  372 (433)
T 4hw6_A          372 P  372 (433)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.51  E-value=7.7e-05  Score=61.92  Aligned_cols=115  Identities=11%  Similarity=0.056  Sum_probs=67.8

Q ss_pred             EEEEcC--CCeEEEecCCC-----------eEEEEeccCCceeeeEEeec-cccceeEEEEeeCCCEEEEEeC-CCcEEE
Q psy6859           8 HVVVTK--TDFVITASNDG-----------HIKFWKKQEEGIEFVKHFRS-HLGVIHSICTNYNGTLLCTVAS-DKAMKV   72 (261)
Q Consensus         8 ~~~~~~--~~~l~s~~~d~-----------~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~-dg~v~~   72 (261)
                      ++++.+  +++++.|+.+.           .+.+||..+.....+..+.. +.....++++..++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            445554  56677776432           58889988875554444432 2233345778889999999984 458999


Q ss_pred             EEccccceeeeeeccCccee-EEEEeecCCceeeeeeecCCC-----CeEEEEEcCCCc
Q psy6859          73 FDVINFDMINMIKLDFTPLT-VECIHYLGDAIPTAAVSDQDS-----SRVHIYDCKGND  125 (261)
Q Consensus        73 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~d-----~~i~i~d~~~~~  125 (261)
                      ||..+++....-..+..... ...+.++++.++..   |..+     ..+.+||..+.+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~G---G~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIG---GSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEEC---CCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEe---CcccCCcccccceEeCCCCCc
Confidence            99987765443222222222 22333345433332   1122     578999998765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.51  E-value=9.1e-05  Score=60.52  Aligned_cols=195  Identities=8%  Similarity=-0.012  Sum_probs=116.5

Q ss_pred             CCeEEEecC-CCeEEEEec-cCCceeeeEEeecccc-----------ceeEEEEeeCCCE----EEEEeCCCcEEEEEcc
Q psy6859          14 TDFVITASN-DGHIKFWKK-QEEGIEFVKHFRSHLG-----------VIHSICTNYNGTL----LCTVASDKAMKVFDVI   76 (261)
Q Consensus        14 ~~~l~s~~~-d~~i~iw~~-~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~----l~s~~~dg~v~~wd~~   76 (261)
                      +..++.++. ++.|.-+|. .++  +.+.++.....           ....+++.|.+..    ++.++.|+.|.-+|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG--~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPG--TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTT--SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCC--cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence            456667777 888999998 776  44444432211           0123455443334    7888899999999999


Q ss_pred             ccceeeeeeccCc----cee-EEEEeecCCceeeeeeec---CCCCeEEEEEcCCCceeeEEeecCCcce----------
Q psy6859          77 NFDMINMIKLDFT----PLT-VECIHYLGDAIPTAAVSD---QDSSRVHIYDCKGNDMINMIKLDFTPLT----------  138 (261)
Q Consensus        77 ~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~s~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~----------  138 (261)
                      +|+.+........    ... .-.+ . +..++.. .++   +.++.|.-+|.++++.+-.+........          
T Consensus       140 TG~~~W~~~~~~~~~~~~~~ssP~v-~-~g~V~vg-~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~  216 (599)
T 1w6s_A          140 TGETVWKVENSDIKVGSTLTIAPYV-V-KDKVIIG-SSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK  216 (599)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEE-E-TTEEEEC-CBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             CCCEEEeecCCCCCccceeecCCEE-E-CCEEEEE-ecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence            9998877664331    111 1111 1 2333332 000   1379999999999988776654321100          


Q ss_pred             -------------------------E-EEEEEeCCCCceEEEEecCC----------------CeEEEEEccCCCcccee
Q psy6859         139 -------------------------V-ECIHYLGDAIPTAAVSDQDS----------------SHVHIYDCKGNGTPLHV  176 (261)
Q Consensus       139 -------------------------~-~~~~~~~~~~~~~~~~~~~d----------------~~i~i~d~~~~~~~~~~  176 (261)
                                               + ..+++.++...  ++.+..+                +.|..+|.+ +++.+..
T Consensus       217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~--vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~-TG~~~W~  293 (599)
T 1w6s_A          217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNL--IYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD-TGEAKFG  293 (599)
T ss_dssp             CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTE--EEEECCCCSCSCGGGSCSCCTTSSEEEEEETT-TCCEEEE
T ss_pred             cccccccccccccCCCcceecCCCccccceeEeCCCCE--EEEeCCCCccccCcccCCCccccceEEEEeCC-CCceeeE
Confidence                                     0 13455555543  3333333                479999998 8988877


Q ss_pred             eccC-cc--------cCeEEEEEc-CCC---CEEEEEcCCCeEEEeeccccccc
Q psy6859         177 LDRL-HT--------KPVVLIKFN-PIY---QVVVSVDKAGILEYWSGYKQEFK  217 (261)
Q Consensus       177 ~~~~-~~--------~~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~  217 (261)
                      ++.. |.        .++. +... .+|   +.++.++.+|.+.++|.++++..
T Consensus       294 ~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          294 YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence            7622 21        1221 2222 567   46788899999999999876543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.45  E-value=0.00025  Score=54.80  Aligned_cols=194  Identities=9%  Similarity=0.003  Sum_probs=111.6

Q ss_pred             EEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeeeec
Q psy6859           8 HVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMINMIKL   86 (261)
Q Consensus         8 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~~~~~   86 (261)
                      |.+..+..+|+.+ ....|+..++...  .....+. ....+..++|.+.+..|+.+ ...+.|..+++........+..
T Consensus        81 C~~~~~~~~l~~~-~~~~I~~i~~~~~--~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  156 (386)
T 3v65_B           81 CKALGPEPVLLFA-NRIDIRQVLPHRS--EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  156 (386)
T ss_dssp             EEECSSCCEEEEE-CBSCEEEECTTSC--CCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred             ECCccccceeEee-cCccceeeccCCC--cEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence            4444443344433 3356777787764  2222233 23457899999755555544 4667898999865543332222


Q ss_pred             cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC-CeEEEE
Q psy6859          87 DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SHVHIY  165 (261)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~  165 (261)
                      .......+.+.+.+..++..   -...+.|.+.++........+..  .......++++|.+.. ++++.... +.|..+
T Consensus       157 ~~~~p~glavd~~~g~lY~~---d~~~~~I~~~~~dg~~~~~l~~~--~l~~P~giavdp~~g~-ly~td~~~~~~I~r~  230 (386)
T 3v65_B          157 GLESPGGLAVDWVHDKLYWT---DSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGT-IYWTDWGNTPRIEAS  230 (386)
T ss_dssp             SCSCCCCEEEETTTTEEEEE---ETTTTEEEECBTTSCSCEEEECS--SCSCEEEEEEETTTTE-EEEEECSSSCEEEEE
T ss_pred             CCCCccEEEEEeCCCeEEEE---cCCCCeEEEEeCCCCceEEeecC--CCCCCcEEEEEcCCCe-EEEeccCCCCEEEEE
Confidence            22222345555544444333   24567888888876543333221  2235678899987664 34554445 788888


Q ss_pred             EccCCCccceeeccCcccCeEEEEEcCCCCEEEE-EcCCCeEEEeeccc
Q psy6859         166 DCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVS-VDKAGILEYWSGYK  213 (261)
Q Consensus       166 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~  213 (261)
                      ++.  +.....+....-...+.|+++|++..|+. -...+.|..+|+..
T Consensus       231 ~~d--G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          231 SMD--GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             ETT--SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             eCC--CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            886  33333332123345789999987766644 44667899998753

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.42  E-value=0.00022  Score=53.64  Aligned_cols=186  Identities=14%  Similarity=0.143  Sum_probs=109.4

Q ss_pred             CCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEee----cCCceeeeeeecCC--CCeEEEEEcC--CCceee
Q psy6859          57 NGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHY----LGDAIPTAAVSDQD--SSRVHIYDCK--GNDMIN  128 (261)
Q Consensus        57 ~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~--d~~i~i~d~~--~~~~~~  128 (261)
                      ...+++.....+-+.+||+ +|+.+..+...  ...-+.+-+    .++.+-.+.++...  +++|.+|++.  ++ .+.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g--~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTG--KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCS--CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCC--CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-cee
Confidence            4456777778889999999 88888887632  122222222    33333233344455  7899999774  33 344


Q ss_pred             EEee---c--CCcceEEEEEE--eCCCCceEEEEecCCCeEEEEEccC------CCccceeeccCcccCeEEEEEcCCCC
Q psy6859         129 MIKL---D--FTPLTVECIHY--LGDAIPTAAVSDQDSSHVHIYDCKG------NGTPLHVLDRLHTKPVVLIKFNPIYQ  195 (261)
Q Consensus       129 ~~~~---~--~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~  195 (261)
                      .+..   .  .....+..+++  +|......++....+|.+..|++..      +.+.+++|.  ....+..+...+...
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd~~g  192 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADDEYG  192 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEETTTT
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcCCCC
Confidence            4411   0  11123444555  6654323355556679999999842      336677885  456788999999889


Q ss_pred             EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC-C-CccceeeeeE--CCCCc-eEEEee
Q psy6859         196 VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA-K-NKTYPSGLSF--SPDGN-KFVTIS  258 (261)
Q Consensus       196 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~--s~~~~-~l~s~~  258 (261)
                      .|+.+-++.-|..++.+...-          .+.+.+..+. + -...+..|+.  .++++ +|++++
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~----------~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGG----------SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSC----------SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             eEEEecccceEEEEeCCcCCC----------CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc
Confidence            999999887665555432100          1123333332 2 2236777777  55666 666655

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.38  E-value=0.00011  Score=61.94  Aligned_cols=195  Identities=13%  Similarity=0.102  Sum_probs=105.4

Q ss_pred             CeEEEEEc-C-CCeEEEec-----CCCeEEEEeccCC-ceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----CcEE
Q psy6859           5 PITHVVVT-K-TDFVITAS-----NDGHIKFWKKQEE-GIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----KAMK   71 (261)
Q Consensus         5 ~v~~~~~~-~-~~~l~s~~-----~d~~i~iw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~   71 (261)
                      .+...+|| | +++||-+.     ...+|+++|+.++ . .....+.   .....++|+||++.|+....+     ..|.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~-~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ-TIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC-CCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE-eCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            57788999 9 88777432     2235999999876 3 1111122   224578999999888877665     2578


Q ss_pred             EEEccccce--eeeeeccC-cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-ee--eEEeecCCcceEEEEEEe
Q psy6859          72 VFDVINFDM--INMIKLDF-TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-MI--NMIKLDFTPLTVECIHYL  145 (261)
Q Consensus        72 ~wd~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~--~~~~~~~~~~~~~~~~~~  145 (261)
                      ++++.+++.  ...+.... .......++++++.++..... .....|.++|+.++. ..  ..+... .......+.|+
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~s~~~~  328 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQS-PETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYDVQMH  328 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEEC-SSCEEEEEEESSSCTTCCCEEESSCC-CTTCCEEEEEE
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecC-CCCceEEEEECCCCCCCceeEEeecC-CCCceEEEeee
Confidence            888876642  22222111 223345678888877765322 345678899998752 12  222211 12233344443


Q ss_pred             CCCCceEEEEecC---CCeEEEEEccCCCcccee-eccCccc--CeEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859         146 GDAIPTAAVSDQD---SSHVHIYDCKGNGTPLHV-LDRLHTK--PVVLIKFNPIYQVVVSVDKAGILEYW  209 (261)
Q Consensus       146 ~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iw  209 (261)
                      . +..+++.+...   ...|..+|+. +...... +. .+..  .+..+.+. .+.++++...++..++|
T Consensus       329 ~-g~~l~~~t~~~~a~~~~L~~~d~~-~~~~~~~~li-~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          329 G-TSHLVILTNEGGAVNHKLLIAPRG-QPSDWSHVLV-DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             T-TTEEEEEECTTTCTTCEEEEEETT-STTCCCCEEE-CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             e-CCEEEEEeCCCCCCCcEEEEEcCC-CcccceeeEE-CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence            3 44333444321   2356667765 3222222 22 3333  34555554 23355666677765544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.37  E-value=0.00036  Score=53.13  Aligned_cols=196  Identities=9%  Similarity=0.007  Sum_probs=113.9

Q ss_pred             eEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeee
Q psy6859           6 ITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         6 v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~~~   84 (261)
                      -+|.+..+..+|+.+. ...|+..+++..  .....+.. ...+..++|++.+..|+.+ ...+.|..+++........+
T Consensus        36 ~~C~~~~~~~~ll~~~-~~~I~~i~~~g~--~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  111 (349)
T 3v64_C           36 RSCKALGPEPVLLFAN-RIDIRQVLPHRS--EYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  111 (349)
T ss_dssp             SCEEESSSCCEEEEEC-BSCEEEECTTSC--CEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CcccccccCceeEeec-ccceEEEeCCCC--eeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence            4455544433444333 345777777654  23233332 3457899999765555554 45678988998755433322


Q ss_pred             eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC-CeEE
Q psy6859          85 KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SHVH  163 (261)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~  163 (261)
                      .........+.+.+.+..++..   -...+.|.+.++........+..  .......++++|.+.. ++++.... +.|.
T Consensus       112 ~~~~~~p~glavd~~~g~ly~~---d~~~~~I~~~~~dG~~~~~l~~~--~l~~P~~iavdp~~g~-ly~td~~~~~~I~  185 (349)
T 3v64_C          112 STGLESPGGLAVDWVHDKLYWT---DSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGT-IYWTDWGNTPRIE  185 (349)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEE---ETTTTEEEEEETTSCSCEEEECT--TCSCEEEEEEETTTTE-EEEEECSSSCEEE
T ss_pred             eCCCCCccEEEEecCCCeEEEE---cCCCCeEEEEcCCCCceEEEEeC--CCCCcceEEEecCcCe-EEEeccCCCCEEE
Confidence            2222222345555545544433   25677899999876543332221  2235588999986654 35555555 8899


Q ss_pred             EEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeeccc
Q psy6859         164 IYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYK  213 (261)
Q Consensus       164 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~  213 (261)
                      .+++.  +.....+....-...+.|+++|++..|+.+ ...+.|..+|+..
T Consensus       186 r~~~d--G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          186 ASSMD--GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEETT--SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEeCC--CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            88886  333333321234457899999877766544 4667899998753

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=0.00048  Score=54.08  Aligned_cols=154  Identities=8%  Similarity=0.047  Sum_probs=90.5

Q ss_pred             CeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CC----cEEEEEccc
Q psy6859           5 PITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DK----AMKVFDVIN   77 (261)
Q Consensus         5 ~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg----~v~~wd~~~   77 (261)
                      ....|+++|  +..|..+...+.|+.++.+..  ... .+.........++|++++++|+.+.. ++    .+...+ ..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~--~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE--YVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RE  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT--EEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC--EEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CC
Confidence            346788885  244544444488888888775  322 22223455789999999996666554 22    233333 34


Q ss_pred             ccee--eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          78 FDMI--NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        78 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      +...  ..+..... ...+.+.+....++..   -..++.|..++..++......... .......++++|++.+ ++++
T Consensus       214 g~~~~~~~l~~~~~-p~giavdp~~g~lyv~---d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~-lyv~  287 (430)
T 3tc9_A          214 SGFKVITELTKGQN-CNGAETHPINGELYFN---SWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNY-AYIV  287 (430)
T ss_dssp             GTSCSEEEEEECSS-CCCEEECTTTCCEEEE---ETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSE-EEEE
T ss_pred             CceeeeeeeccCCC-ceEEEEeCCCCEEEEE---ECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCE-EEEE
Confidence            4332  22221222 2345566633334332   146788999998876543333322 1224578999999974 3666


Q ss_pred             ecCCCeEEEEEcc
Q psy6859         156 DQDSSHVHIYDCK  168 (261)
Q Consensus       156 ~~~d~~i~i~d~~  168 (261)
                      ....+.|..++..
T Consensus       288 d~~~~~I~~~~~d  300 (430)
T 3tc9_A          288 VVNQHYILRSDYD  300 (430)
T ss_dssp             ETTTTEEEEEEEE
T ss_pred             ECCCCEEEEEeCC
Confidence            6778899998876

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.36  E-value=6.6e-05  Score=63.30  Aligned_cols=159  Identities=8%  Similarity=-0.008  Sum_probs=92.1

Q ss_pred             ceeEEEEe-eCCCEEEEEeC-CC----cEEEEEcccc-ceeee-eeccCcceeEEEEeecCCceeeeeeecCC-CCeEEE
Q psy6859          48 VIHSICTN-YNGTLLCTVAS-DK----AMKVFDVINF-DMINM-IKLDFTPLTVECIHYLGDAIPTAAVSDQD-SSRVHI  118 (261)
Q Consensus        48 ~v~~~~~~-~~~~~l~s~~~-dg----~v~~wd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~i~i  118 (261)
                      .+...+|+ |||++|+-+.. +|    +|+++|+.++ +.+.. +.  . ......++++++.++........ ...|..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~-~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--G-TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--E-ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--C-ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57788999 99998875543 33    4999999988 63321 11  1 12345678888877766221111 136888


Q ss_pred             EEcCCCcee--eEEeecCCcceEEEEEEeCCCCceEEEEec-CCCeEEEEEccCCCc-cc--eeeccCcccCeEEEEEcC
Q psy6859         119 YDCKGNDMI--NMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-DSSHVHIYDCKGNGT-PL--HVLDRLHTKPVVLIKFNP  192 (261)
Q Consensus       119 ~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~-~~--~~~~~~~~~~v~~~~~~~  192 (261)
                      +++.++...  ..+... .......+.++|++.++++.+.. ....|+++|+. ++. ..  ..+.........++.|+.
T Consensus       252 ~~lgt~~~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~-~~~~~~~~~~l~~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR-KGNAHNTLEIVRPREKGVRYDVQMHG  329 (751)
T ss_dssp             EETTSCGGGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS-SCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred             EECCCCchhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECC-CCCCCceeEEeecCCCCceEEEeeee
Confidence            888876432  222222 22345678999999976554433 24468888987 432 22  334313445556666655


Q ss_pred             CCCEEEEEcCC--C--eEEEeec
Q psy6859         193 IYQVVVSVDKA--G--ILEYWSG  211 (261)
Q Consensus       193 ~~~~l~~~~~d--g--~i~iwd~  211 (261)
                      .+.+++....+  +  .|..+|+
T Consensus       330 g~~l~~~t~~~~a~~~~L~~~d~  352 (751)
T 2xe4_A          330 TSHLVILTNEGGAVNHKLLIAPR  352 (751)
T ss_dssp             TTEEEEEECTTTCTTCEEEEEET
T ss_pred             CCEEEEEeCCCCCCCcEEEEEcC
Confidence            44455555444  3  4555555

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.34  E-value=0.00039  Score=51.88  Aligned_cols=188  Identities=10%  Similarity=0.055  Sum_probs=102.5

Q ss_pred             CeEEEEEcC-CCeEEEecCC-C-eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc-e
Q psy6859           5 PITHVVVTK-TDFVITASND-G-HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD-M   80 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d-~-~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~-~   80 (261)
                      ....+++.+ ++++++.... + .|..++..++....+..+. .......++..+++..+++-..++.|..+|...++ .
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            467889998 7765554332 2 4656666655333222221 11223455555555445554468888888876542 1


Q ss_pred             eeee-------eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC-Cce--eeEEeecCCcceEEEEEEeCCCCc
Q psy6859          81 INMI-------KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG-NDM--INMIKLDFTPLTVECIHYLGDAIP  150 (261)
Q Consensus        81 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~  150 (261)
                      +...       ...........++++++.++..   -...+.|..+++.. ++.  ...+...   .....+++++++. 
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~---d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~-  224 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGLKRFGNFLYVS---NTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGN-  224 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEEEEETTEEEEE---ETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCC-
T ss_pred             EEEECCccccccccCCCCcCCCcCcCCCEEEEE---eCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCC-
Confidence            1100       0000101112236677655443   25678999999875 321  1112111   1235678888885 


Q ss_pred             eEEEEecCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEEc---CCCCEEEEEcCCC
Q psy6859         151 TAAVSDQDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFN---PIYQVVVSVDKAG  204 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg  204 (261)
                       ++++....+.|.++|..  ++.  +..+. ..-...++++|.   |+++.|+..+..+
T Consensus       225 -l~va~~~~~~V~~~~~~--G~~~~~~~~~-~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          225 -LYGATHIYNSVVRIAPD--RSTTIIAQAE-QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             -EEEECBTTCCEEEECTT--CCEEEEECGG-GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             -EEEEeCCCCeEEEECCC--CCEEEEeecc-cccCCceEEEEecccCCCCEEEEECCCC
Confidence             36666667889999864  444  22343 233568999998   8887776555433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.28  E-value=0.00071  Score=52.57  Aligned_cols=186  Identities=10%  Similarity=0.004  Sum_probs=108.9

Q ss_pred             eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEccccc----eeeeeeccCcc
Q psy6859          16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVINFD----MINMIKLDFTP   90 (261)
Q Consensus        16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~~~----~~~~~~~~~~~   90 (261)
                      +|+.+. ...|+..+++...  ....+. ....+..++|++.+..|+.+. ..+.|..+++....    ....+......
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~--~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~  160 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA  160 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCS--CEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred             eeEEec-cceeEEEccCCcc--eeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence            344333 4678888887652  222222 345678999998655555554 56788888876421    22222212222


Q ss_pred             eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe-cCCCeEEEEEccC
Q psy6859          91 LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QDSSHVHIYDCKG  169 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~  169 (261)
                      ...+.+.+.+..++..   -...+.|.+.++........+..  .......++++|....+ +++- +..+.|...++. 
T Consensus       161 p~glavD~~~~~lY~~---d~~~~~I~~~~~~g~~~~~l~~~--~~~~P~~iavdp~~g~l-y~td~~~~~~I~~~~~d-  233 (400)
T 3p5b_L          161 PDGLAVDWIHSNIYWT---DSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFM-YWTDWGTPAKIKKGGLN-  233 (400)
T ss_dssp             EEEEEEETTTTEEEEE---ETTTTEEEEECTTTCSEEEEEEC--SSCCEEEEEEETTTTEE-EEEECSSSCCEEEEETT-
T ss_pred             cccEEEEecCCceEEE---ECCCCeEEEEeCCCCceEEEEeC--CCCCcceEEEecccCeE-EEEeCCCCCEEEEEeCC-
Confidence            3445555544444433   25678899999887654444432  22346889999876543 4443 334788888886 


Q ss_pred             CCccceeeccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeeccc
Q psy6859         170 NGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYK  213 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~  213 (261)
                       +.....+....-...+.|+++|++..|+.+ ...+.|..+|+..
T Consensus       234 -G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          234 -GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             -SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             -CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence             333333321233567999999887777555 4567899998753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.24  E-value=0.00088  Score=52.04  Aligned_cols=203  Identities=5%  Similarity=-0.072  Sum_probs=117.6

Q ss_pred             CCeEEEEEcC-CC-eEEEecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEcccc
Q psy6859           4 SPITHVVVTK-TD-FVITASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         4 ~~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ..+..|+|++ ++ ++++-...+.|..++++...  ......+.........+++.+ .++++++-...+.|.+.++...
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~  191 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  191 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence            4567889987 44 45555667888888876521  012222332334567899987 4445555556788999988654


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      .....+.........+.+.+.+..++..-.  +..+.|...++........+..  .-.....++++++... ++++-..
T Consensus       192 ~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~~~~~~~~~--~l~~P~glavd~~~~~-lY~aD~~  266 (400)
T 3p5b_L          192 KRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGR-LYWVDSK  266 (400)
T ss_dssp             SEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSCSCEEEECS--SCSCEEEEEEETTTTE-EEEEETT
T ss_pred             ceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCCccEEEEEC--CCCceEEEEEEeCCCE-EEEEECC
Confidence            433333323333445666665555554311  2246888888876544333322  2235688999987764 4566667


Q ss_pred             CCeEEEEEccCCCccceeecc--CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDR--LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      .+.|..+|+. . .....+..  ..-....++++. .+.++.+-...+.|..+|..++
T Consensus       267 ~~~I~~~d~d-G-~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          267 LHSISSIDVN-G-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             TTEEEEEETT-S-CCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             CCEEEEEeCC-C-CccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            8899999986 3 33333320  122345677773 3345556667778888885443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.23  E-value=2.5e-05  Score=65.11  Aligned_cols=200  Identities=6%  Similarity=-0.062  Sum_probs=106.2

Q ss_pred             eEEEEEcC-CCeEE-EecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEccccce
Q psy6859           6 ITHVVVTK-TDFVI-TASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         6 v~~~~~~~-~~~l~-s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      +..|+|.+ ++.|+ +-...+.|+.+++.+..  ......+.........|++.+. ++++++-...+.|.++++.....
T Consensus       408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~  487 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR  487 (699)
T ss_dssp             CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE
T ss_pred             eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce
Confidence            45678887 54444 44556788888876410  0111122111223567888754 44445545667899999764433


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ...+.........+.+.+.+..++..-.  +..+.|..+++........+..  .......++++|++..+ +++-...+
T Consensus       488 ~~l~~~~~~~P~giavDp~~g~ly~td~--~~~~~I~~~~~dG~~~~~l~~~--~l~~PnGlavd~~~~~L-Y~aD~~~~  562 (699)
T 1n7d_A          488 KTLFREQGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGRL-YWVDSKLH  562 (699)
T ss_dssp             EEECCCSSCCCCCEECCSSSSCCEECCC--SSSCCEEBCCSSSCCCCEESCS--SCSSCCCEEECTTTCCE-EEEETTTT
T ss_pred             EEEEeCCCCCcceEEEccCCCcEEEccc--CCCCeEEEEeCCCCCeeEEEeC--CCCCccEEEEeccCCEE-EEEecCCC
Confidence            3222222222334556665555544310  1236788777765432222111  11234678999876653 56666788


Q ss_pred             eEEEEEccCCCccceeecc--CcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         161 HVHIYDCKGNGTPLHVLDR--LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .|..+|+. .. ....+..  ..-.....|++..+ .++++....+.|..++..+
T Consensus       563 ~I~~~d~d-G~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          563 SISSIDVN-GG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             EEEEECSS-SS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred             eEEEEccC-CC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence            99999986 32 2233310  11223445666544 4445555678899888644

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.22  E-value=0.00079  Score=50.55  Aligned_cols=200  Identities=7%  Similarity=-0.074  Sum_probs=117.5

Q ss_pred             eEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEccccceee
Q psy6859           6 ITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         6 v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      ..+++|.+  +.++.+-...+.|..++.+.... ....+...-.....+++.+. ++++++-...+.|.++++.......
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-CCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-eEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            45788887  44556666778888888876421 11122222235678999874 4445555567789999985432222


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeE
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV  162 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  162 (261)
                      .+.........+.+.+.+..++..-  .+..+.|...++........+..  .-.....+++++++.. ++++-...+.|
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td--~~~~~~I~r~~~dG~~~~~~~~~--~l~~Pnglavd~~~~~-lY~aD~~~~~I  190 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTD--WGEVPKIERAGMDGSSRFIIINS--EIYWPNGLTLDYEEQK-LYWADAKLNFI  190 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEE--CSSSCEEEEEETTSCSCEEEECS--SCSCEEEEEEETTTTE-EEEEETTTTEE
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEe--cCCCCEEEEEEcCCCCeEEEEEC--CCCCccEEEEeccCCE-EEEEECCCCEE
Confidence            2222222334556666555554431  02357888888875433222221  2234578999987664 46666778899


Q ss_pred             EEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       163 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      ..+|+. . ...+.+..........+++.. +.++.+-...+.|..++..++
T Consensus       191 ~~~d~d-G-~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          191 HKSNLD-G-TNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             EEEETT-S-CSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             EEEcCC-C-CceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence            999986 3 333333212344567788753 345555667788999987554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.21  E-value=0.00081  Score=50.43  Aligned_cols=179  Identities=11%  Similarity=0.005  Sum_probs=104.8

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccc---cceeee-eeccCcceeEEEEee
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVIN---FDMINM-IKLDFTPLTVECIHY   98 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~---~~~~~~-~~~~~~~~~~~~~~~   98 (261)
                      ..|+..+++..  +....+. ....+..++|++.++.|+.+ ...+.|..+++..   +..... +.........+.+.+
T Consensus        10 ~~I~~i~~~~~--~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~   86 (316)
T 1ijq_A           10 HEVRKMTLDRS--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW   86 (316)
T ss_dssp             SSEEEEETTSC--CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             CeEEEEECCCc--ceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence            56888888875  3333333 23457899999865555544 4568899999865   122222 221212223455554


Q ss_pred             cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC-CeEEEEEccCCCccceee
Q psy6859          99 LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS-SHVHIYDCKGNGTPLHVL  177 (261)
Q Consensus        99 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~  177 (261)
                      .+..++..   -...+.|.++++........+..  .......++.+|.+..+ +++.... +.|..+++.  +.....+
T Consensus        87 ~~~~ly~~---d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~iavdp~~g~l-y~~d~~~~~~I~~~~~d--G~~~~~~  158 (316)
T 1ijq_A           87 IHSNIYWT---DSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFM-YWTDWGTPAKIKKGGLN--GVDIYSL  158 (316)
T ss_dssp             TTTEEEEE---ETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEE-EEEECSSSCEEEEEETT--SCCEEEE
T ss_pred             cCCeEEEE---ECCCCEEEEEeCCCCceEEEEEC--CCCCcceEEeCCCCCEE-EEEccCCCCeEEEEcCC--CCCeEEE
Confidence            44444432   25678999999876544333332  22356789999866543 4444333 788888875  3333333


Q ss_pred             ccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeeccc
Q psy6859         178 DRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYK  213 (261)
Q Consensus       178 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~  213 (261)
                      ....-...+.|+++|++..|+.+ ...+.|..+|+..
T Consensus       159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            21233567899999987766544 4667899999853

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.20  E-value=0.0015  Score=53.30  Aligned_cols=162  Identities=13%  Similarity=0.009  Sum_probs=90.9

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccc--c--cee-EEEEeeC---CC-EEEEEe------CCCcEEEEEcccc
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL--G--VIH-SICTNYN---GT-LLCTVA------SDKAMKVFDVINF   78 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~--~--~v~-~~~~~~~---~~-~l~s~~------~dg~v~~wd~~~~   78 (261)
                      +..++.++.|+.|.-+|..++  +.+.......  .  .+. .-....+   ++ .++.++      .++.|.-+|..+|
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG--~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG  194 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTG--KVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG  194 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSC--CEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred             CCEEEEEeCCCEEEEEECCCC--CEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence            456777888999999999887  4444433221  0  111 1111122   33 555554      3789999999999


Q ss_pred             ceeeeeeccCcce-----------------------------------------eEEEEeecCCceeeeeeec-------
Q psy6859          79 DMINMIKLDFTPL-----------------------------------------TVECIHYLGDAIPTAAVSD-------  110 (261)
Q Consensus        79 ~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~s~-------  110 (261)
                      +.+..........                                         ....+.+....++...-.+       
T Consensus       195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~  274 (582)
T 1flg_A          195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA  274 (582)
T ss_dssp             CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred             CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence            8877654321000                                         0112222233333221000       


Q ss_pred             ---CC------C----CeEEEEEcCCCceeeEEeecCCc-------ceEEEEEEe-CCCCc-eEEEEecCCCeEEEEEcc
Q psy6859         111 ---QD------S----SRVHIYDCKGNDMINMIKLDFTP-------LTVECIHYL-GDAIP-TAAVSDQDSSHVHIYDCK  168 (261)
Q Consensus       111 ---~~------d----~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~-~~~~~~~~d~~i~i~d~~  168 (261)
                         ..      |    +.|.-+|.++++.+-.++...+.       ....-+... .++.. .+++.++.+|.++++|..
T Consensus       275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~  354 (582)
T 1flg_A          275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS  354 (582)
T ss_dssp             GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred             cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC
Confidence               00      2    68999999999988777653221       111112222 34431 247778899999999998


Q ss_pred             CCCccceeec
Q psy6859         169 GNGTPLHVLD  178 (261)
Q Consensus       169 ~~~~~~~~~~  178 (261)
                       +++++..++
T Consensus       355 -tG~~lw~~~  363 (582)
T 1flg_A          355 -NGKLQNAFP  363 (582)
T ss_dssp             -TCCEEEEEE
T ss_pred             -CCCEecccc
Confidence             888876654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.20  E-value=0.00087  Score=50.26  Aligned_cols=201  Identities=5%  Similarity=-0.087  Sum_probs=116.2

Q ss_pred             CeEEEEEcC-CC-eEEEecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEeeCCC-EEEEEeCCCcEEEEEccccc
Q psy6859           5 PITHVVVTK-TD-FVITASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNYNGT-LLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         5 ~v~~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ...+++|++ ++ ++++-...+.|..++.++..  ......+...-.....+++.+.+. ++++-...+.|.+.++....
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~  110 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  110 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc
Confidence            456889987 44 55565667899999887510  011222222223458899987444 44555567889999986433


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCC-CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ....+.........+.+.+.+..++..   ... .+.|...++..... ..+.. ..-.....+++++++.. ++++-..
T Consensus       111 ~~~~~~~~~~~P~~iavdp~~g~ly~~---d~~~~~~I~~~~~dG~~~-~~~~~-~~~~~P~gla~d~~~~~-lY~~D~~  184 (316)
T 1ijq_A          111 RKTLFRENGSKPRAIVVDPVHGFMYWT---DWGTPAKIKKGGLNGVDI-YSLVT-ENIQWPNGITLDLLSGR-LYWVDSK  184 (316)
T ss_dssp             EEEEEECTTCCEEEEEEETTTTEEEEE---ECSSSCEEEEEETTSCCE-EEEEC-SSCSCEEEEEEETTTTE-EEEEETT
T ss_pred             eEEEEECCCCCcceEEeCCCCCEEEEE---ccCCCCeEEEEcCCCCCe-EEEEE-CCCCCceEEEEeccCCE-EEEEECC
Confidence            322222222233455666655555443   122 37888888865433 22211 12235678999987764 4566667


Q ss_pred             CCeEEEEEccCCCccceeecc--CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDR--LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      .+.|..+|+. . ...+.+..  ..-.....+++. .+.++++-...+.|..++..++
T Consensus       185 ~~~I~~~d~d-g-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          185 LHSISSIDVN-G-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             TTEEEEEETT-S-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCeEEEEecC-C-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            8899999986 3 33333320  122346778885 3555566667788988886543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.13  E-value=0.0029  Score=53.53  Aligned_cols=180  Identities=11%  Similarity=0.008  Sum_probs=105.0

Q ss_pred             CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEcccc----ceeeeeeccCcceeEEEEe
Q psy6859          23 DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINF----DMINMIKLDFTPLTVECIH   97 (261)
Q Consensus        23 d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~----~~~~~~~~~~~~~~~~~~~   97 (261)
                      ...|+..++...  .....+. ....+..|+|.+....|+ +-...+.|+.+++...    .....+.........+++.
T Consensus       403 ~~~Ir~i~l~~~--~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          403 RHEVRKMTLDRS--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             BSSEEEECTTSC--CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             ccceeEeeccCC--cceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            356777777654  2222222 345678899998544444 4445678888888642    1222222122223455666


Q ss_pred             ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec-CCCeEEEEEccCCCcccee
Q psy6859          98 YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-DSSHVHIYDCKGNGTPLHV  176 (261)
Q Consensus        98 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~  176 (261)
                      +.++.++..   -...+.|.+.++........+..  .......|+++|....+ +++-. ..+.|...++.  +.....
T Consensus       480 ~~~~~LY~t---D~~~~~I~v~~ldG~~~~~l~~~--~l~~P~gIaVDp~~g~L-YwtD~g~~~~I~~~~~d--G~~~~~  551 (791)
T 3m0c_C          480 WIHSNIYWT---DSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFM-YWTDWGTPAKIKKGGLN--GVDIYS  551 (791)
T ss_dssp             TTTTEEEEE---ETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEE-EEEECSSSCEEEEEETT--SCCEEE
T ss_pred             ecCCcEEEE---ecCCCeEEEEeCCCCeEEEEEeC--CCCCcceEEEecCCCCE-EEecCCCCCeEEEEecC--CCceEE
Confidence            656555443   25678999999986654333332  22346889999876543 44443 33788888886  333333


Q ss_pred             eccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeeccc
Q psy6859         177 LDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYK  213 (261)
Q Consensus       177 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~  213 (261)
                      +....-...+.|++++.+..|+.+. ....|...++..
T Consensus       552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            3213335789999998777665554 567788888753

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.10  E-value=0.0032  Score=53.25  Aligned_cols=201  Identities=5%  Similarity=-0.092  Sum_probs=113.8

Q ss_pred             CeEEEEEcC-C-CeEEEecCCCeEEEEeccCCce--eeeEEeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEccccc
Q psy6859           5 PITHVVVTK-T-DFVITASNDGHIKFWKKQEEGI--EFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINFD   79 (261)
Q Consensus         5 ~v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~   79 (261)
                      .+..|+|.+ + .++++-...+.|+.+++.....  .....+.........|++.+.++.|+ +-...+.|.+.++....
T Consensus       425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~  504 (791)
T 3m0c_C          425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  504 (791)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred             ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe
Confidence            456788887 4 4555656667888888765210  12223332334567899988665444 44567889999986443


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ....+.........+.+.+....++..-.  +..+.|...++........+..  .......|++++.... ++++-...
T Consensus       505 ~~~l~~~~l~~P~gIaVDp~~g~LYwtD~--g~~~~I~~~~~dG~~~~~lv~~--~l~~P~GLavD~~~~~-LYwaD~~~  579 (791)
T 3m0c_C          505 RKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGR-LYWVDSKL  579 (791)
T ss_dssp             EEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCCEEEEECS--SCSCEEEEEEETTTTE-EEEEETTT
T ss_pred             EEEEEeCCCCCcceEEEecCCCCEEEecC--CCCCeEEEEecCCCceEEEEeC--CCCCceEEEEecCCCe-EEEEeCCC
Confidence            32222222233455666666555554411  2237888889876544333332  2235678999977664 35566667


Q ss_pred             CeEEEEEccCCCccceeeccC--cccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRL--HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ..|..+++. . .....+...  .-....+|++..+ .++++-...+.|...|..+
T Consensus       580 ~~I~~~d~d-G-~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~t  632 (791)
T 3m0c_C          580 HSISSIDVN-G-GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT  632 (791)
T ss_dssp             TEEEEEETT-S-CSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTT
T ss_pred             CcEEEEecC-C-CceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCC
Confidence            889999986 3 333333201  1223456666432 3444545667787777544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=0.00064  Score=53.37  Aligned_cols=156  Identities=9%  Similarity=0.038  Sum_probs=91.1

Q ss_pred             eeEEEEee-CCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCC-eEEEEEcCCCce
Q psy6859          49 IHSICTNY-NGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS-RVHIYDCKGNDM  126 (261)
Q Consensus        49 v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~-~i~i~d~~~~~~  126 (261)
                      ...|+++| ++..|+.+...+.|+.+|+..++...... .......+.+.++++.++..-..+.... .+..++.. +..
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~  216 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF  216 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence            47889997 34566666655788999987655443333 3333456677777775555421111112 34444433 222


Q ss_pred             e--eEEeecCCcceEEEEEEeC-CCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE-EEEcC
Q psy6859         127 I--NMIKLDFTPLTVECIHYLG-DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDK  202 (261)
Q Consensus       127 ~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~  202 (261)
                      .  ..+....   ....++++| ++.  ++++-..++.|..++.. .+................++|+|+|++| ++-..
T Consensus       217 ~~~~~l~~~~---~p~giavdp~~g~--lyv~d~~~~~V~~~~~~-~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          217 KVITELTKGQ---NCNGAETHPINGE--LYFNSWNAGQVFRYDFT-TQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             CSEEEEEECS---SCCCEEECTTTCC--EEEEETTTTEEEEEETT-TTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             eeeeeeccCC---CceEEEEeCCCCE--EEEEECCCCEEEEEECC-CCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence            2  2222212   235677888 454  36666678899999987 4433222221223457899999999955 45557


Q ss_pred             CCeEEEeecc
Q psy6859         203 AGILEYWSGY  212 (261)
Q Consensus       203 dg~i~iwd~~  212 (261)
                      .+.|..++..
T Consensus       291 ~~~I~~~~~d  300 (430)
T 3tc9_A          291 QHYILRSDYD  300 (430)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEeCC
Confidence            7889998765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.03  E-value=0.0021  Score=48.41  Aligned_cols=227  Identities=10%  Similarity=-0.015  Sum_probs=108.1

Q ss_pred             CCeEEEEEcCCCeEEEecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ..+.+|.|.++..++ ++.++.|..  ..+++  .+.+.....+.+.+..+.+.++++.++.+ .++.|.. ....++.-
T Consensus        80 ~~~~~i~~~~~~~~~-~g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW  154 (327)
T 2xbg_A           80 YRFNSVSFQGNEGWI-VGEPPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNW  154 (327)
T ss_dssp             CEEEEEEEETTEEEE-EEETTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSE
T ss_pred             ccEEEEEecCCeEEE-EECCCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCC
Confidence            357889888754444 455565433  33222  22222111233456778887777665554 4554422 11223322


Q ss_pred             eeeecc-CcceeEEEEeecCCceeeeeeecCCCCeEEE-EEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          82 NMIKLD-FTPLTVECIHYLGDAIPTAAVSDQDSSRVHI-YDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        82 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      ...... ......+.+.+++..+ ++    +.++.+.. .|- .++.-..+.. ..+..+..+.+.+++.   ++..+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~-~~----g~~G~~~~S~d~-gG~tW~~~~~-~~~~~~~~~~~~~~g~---~~~~~~~  224 (327)
T 2xbg_A          155 QALVQEAIGVMRNLNRSPSGEYV-AV----SSRGSFYSTWEP-GQTAWEPHNR-TTSRRLHNMGFTPDGR---LWMIVNG  224 (327)
T ss_dssp             EEEECSCCCCEEEEEECTTSCEE-EE----ETTSSEEEEECT-TCSSCEEEEC-CSSSCEEEEEECTTSC---EEEEETT
T ss_pred             EEeecCCCcceEEEEEcCCCcEE-EE----ECCCcEEEEeCC-CCCceeECCC-CCCCccceeEECCCCC---EEEEeCC
Confidence            222211 1223334444444333 22    34444433 332 1222222222 2344677888888875   3344457


Q ss_pred             CeEEEEEccCCCccceeecc---CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         160 SHVHIYDCKGNGTPLHVLDR---LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      |.+++.+.. .++....+..   .....+.++.+.+++.+++++. +|.+ ++..+.+            ++-+.+....
T Consensus       225 G~~~~s~~D-~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG------------~tW~~~~~~~  289 (327)
T 2xbg_A          225 GKIAFSDPD-NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG------------QTWQQDVDVK  289 (327)
T ss_dssp             TEEEEEETT-EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT------------SSCEECGGGT
T ss_pred             ceEEEecCC-CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC------------cccEEcCccC
Confidence            887776422 2333222220   1234588999998888777665 6655 3333221            1111111111


Q ss_pred             CCccceeeeeECCCCceEEEeecCC
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .....+.++.|.++++.+ +++.+|
T Consensus       290 ~~~~~~~~v~~~~~~~~~-~~G~~G  313 (327)
T 2xbg_A          290 KVPSNFYKILFFSPDQGF-ILGQKG  313 (327)
T ss_dssp             TSSSCCCEEEEEETTEEE-EECSTT
T ss_pred             CCCCCeEEEEEECCCceE-EEcCCc
Confidence            223566788887666544 444443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.02  E-value=0.0022  Score=48.34  Aligned_cols=191  Identities=9%  Similarity=0.068  Sum_probs=97.7

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEE-EEEcccccee
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMK-VFDVINFDMI   81 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~-~wd~~~~~~~   81 (261)
                      ..+..|.+.+ +..++.+ .++.|  |...+.+.............+..+.+.+++++++.+. +|.+. -+|- .++.-
T Consensus       122 ~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW  196 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAW  196 (327)
T ss_dssp             SCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCSSC
T ss_pred             CCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCce
Confidence            4567787766 5555554 45543  3333322233333334556788999999888776654 44443 3332 12222


Q ss_pred             eeee-ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec--CCcceEEEEEEeCCCCceEEEEecC
Q psy6859          82 NMIK-LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD--FTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ..+. ........+.+.+++. ++.+    +.+|.+.+.+...++.-..+...  .....+..+.+.+++.  +++++. 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~g~-~~~~----~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~--~~~~g~-  268 (327)
T 2xbg_A          197 EPHNRTTSRRLHNMGFTPDGR-LWMI----VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE--VWLAGG-  268 (327)
T ss_dssp             EEEECCSSSCEEEEEECTTSC-EEEE----ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC--EEEEES-
T ss_pred             eECCCCCCCccceeEECCCCC-EEEE----eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE--EEEEeC-
Confidence            2211 1122233444445543 3333    45777776643323222222211  1112477888887664  244444 


Q ss_pred             CCeEEEEEccCCCccceeecc--CcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDR--LHTKPVVLIKFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      ++.+ ++... .++.-..+..  .....+.++.|.++++ +++++.+|.|.-++
T Consensus       269 ~g~i-~~S~D-gG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          269 AGAL-LCSQD-GGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             TTCE-EEESS-TTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CCeE-EEeCC-CCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            6766 33333 4444443420  1245678888876655 55556788776665

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.00  E-value=0.00018  Score=60.06  Aligned_cols=180  Identities=10%  Similarity=-0.014  Sum_probs=99.0

Q ss_pred             CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEccc----cceeeeeeccCcceeEEEEe
Q psy6859          23 DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVIN----FDMINMIKLDFTPLTVECIH   97 (261)
Q Consensus        23 d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~----~~~~~~~~~~~~~~~~~~~~   97 (261)
                      ...|+..++...  .....+. ....+..++|.+.+..|+.+. ..+.|+.+++..    ......+.........+.+.
T Consensus       385 ~~~I~~id~~~~--~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD  461 (699)
T 1n7d_A          385 RHEVRKMTLDRS--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  461 (699)
T ss_dssp             TTC-CEECTTSC--CEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred             ccceEEEeCCCC--cceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence            356777777664  2322222 224567899998666666554 557899998864    12222221111112234454


Q ss_pred             ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC-CCeEEEEEccCCCcccee
Q psy6859          98 YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-SSHVHIYDCKGNGTPLHV  176 (261)
Q Consensus        98 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~  176 (261)
                      +.+..++..   -...+.|.++++........+...  ......++++|.+..+ +++... .+.|..+++.  +.....
T Consensus       462 ~~~g~LY~t---D~~~~~I~v~d~dg~~~~~l~~~~--~~~P~giavDp~~g~l-y~td~~~~~~I~~~~~d--G~~~~~  533 (699)
T 1n7d_A          462 WIHSNIYWT---DSVLGTVSVADTKGVKRKTLFREQ--GSKPRAIVVDPVHGFM-YWTDWGTPAKIKKGGLN--GVDIYS  533 (699)
T ss_dssp             CSSSBCEEC---CTTTSCEEEEBSSSCCEEEECCCS--SCCCCCEECCSSSSCC-EECCCSSSCCEEBCCSS--SCCCCE
T ss_pred             eeCCcEEEE---eccCCeEEEEecCCCceEEEEeCC--CCCcceEEEccCCCcE-EEcccCCCCeEEEEeCC--CCCeeE
Confidence            444444332   145678999998766443333221  1234677888865542 444322 3678888775  333333


Q ss_pred             eccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeeccc
Q psy6859         177 LDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYK  213 (261)
Q Consensus       177 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~  213 (261)
                      +....-...+.|+|+|++..| ++-...+.|..+++..
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            310223456789999986655 4445677899998853

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.99  E-value=0.0008  Score=50.20  Aligned_cols=162  Identities=9%  Similarity=0.055  Sum_probs=100.5

Q ss_pred             cccceeEEEEeeCCCEEEEEe-CCCcEEEEEccccceeeeeeccC-----c---ceeEEEE---eecCCceeeeeeec--
Q psy6859          45 HLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVINFDMINMIKLDF-----T---PLTVECI---HYLGDAIPTAAVSD--  110 (261)
Q Consensus        45 ~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~~~~~~~~~~~~-----~---~~~~~~~---~~~~~~~~~~~~s~--  110 (261)
                      ..-.-.++.|.+....+..++ ..++|..||...+..... ....     .   ....+.+   .+. ..++.+.-.+  
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~a   88 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKS   88 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccc
Confidence            334457889987555555555 789999999875543332 2221     1   1233344   344 3444431110  


Q ss_pred             --------CCCCeEEEEEcC---CCceeeEEeecC-----------CcceEEEEEEeCCCCceEEEEecCC-CeEEEEEc
Q psy6859         111 --------QDSSRVHIYDCK---GNDMINMIKLDF-----------TPLTVECIHYLGDAIPTAAVSDQDS-SHVHIYDC  167 (261)
Q Consensus       111 --------~~d~~i~i~d~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~  167 (261)
                              +.+..|..||+.   +++.+....+..           .......++..+++..  .++++.. +.|..++.
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna--YVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS--YVAFALGMPAIARVSA  166 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE--EEEEEESSCEEEEECT
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE--EEeCCCCCCeEEEEeC
Confidence                    236889999999   777766655321           1235788999999975  6767766 77766665


Q ss_pred             cCCCccceeec-----cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         168 KGNGTPLHVLD-----RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       168 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      .  ++.+..+.     .......+.|+++|+|+.|++....|.|.-+|+.
T Consensus       167 d--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          167 D--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             T--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             C--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            4  33333321     0112336799999999988777669999999985

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.93  E-value=0.0031  Score=46.91  Aligned_cols=186  Identities=9%  Similarity=0.022  Sum_probs=89.5

Q ss_pred             CeEEEecC--CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC----CcEEEEEccccceeeeeeccC
Q psy6859          15 DFVITASN--DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD----KAMKVFDVINFDMINMIKLDF   88 (261)
Q Consensus        15 ~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~v~~wd~~~~~~~~~~~~~~   88 (261)
                      .+++.|+.  ...+.+||..+.....+..+...... .++ ...+++.++.|+.+    ..+.+||+.+.+....-..+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~-~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD-AAC-VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS-CEE-EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce-eEE-EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            35566665  35788899888644444333221111 122 22366677777754    568889988776443322222


Q ss_pred             cceeEEEEeecCCceeeeeeecCC------CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC----
Q psy6859          89 TPLTVECIHYLGDAIPTAAVSDQD------SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD----  158 (261)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  158 (261)
                      ..........+ +.++..   |+.      ...+.+||+.+.+-...-...... .-.++... ++.  +++.|+.    
T Consensus        91 ~r~~~~~~~~~-~~iyv~---GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~-~~~--iyv~GG~~~~~  162 (306)
T 3ii7_A           91 PRDSLAACAAE-GKIYTS---GGSEVGNSALYLFECYDTRTESWHTKPSMLTQR-CSHGMVEA-NGL--IYVCGGSLGNN  162 (306)
T ss_dssp             CCBSCEEEEET-TEEEEE---CCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEE-TTE--EEEECCEESCT
T ss_pred             cccceeEEEEC-CEEEEE---CCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc-ceeEEEEE-CCE--EEEECCCCCCC
Confidence            22222222223 333332   222      256889999887543322221111 11122222 222  2444432    


Q ss_pred             -----CCeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeecccc
Q psy6859         159 -----SSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYKQ  214 (261)
Q Consensus       159 -----d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  214 (261)
                           -..+.+||.. +.+  .+..+. .....-..+.+  ++++++.|+.+     ..+.+||+.++
T Consensus       163 ~~~~~~~~~~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          163 VSGRVLNSCEVYDPA-TETWTELCPMI-EARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TTCEECCCEEEEETT-TTEEEEECCCS-SCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             CcccccceEEEeCCC-CCeEEECCCcc-chhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence                 3458889987 442  122221 11111122222  56666776643     35788888654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.91  E-value=0.0039  Score=47.38  Aligned_cols=190  Identities=14%  Similarity=0.083  Sum_probs=101.7

Q ss_pred             ceeEEEEeeCCCEEEEEe------------CCCcEEEEEcccc-ceeeeeecc--------CcceeEEEEee--cCCcee
Q psy6859          48 VIHSICTNYNGTLLCTVA------------SDKAMKVFDVINF-DMINMIKLD--------FTPLTVECIHY--LGDAIP  104 (261)
Q Consensus        48 ~v~~~~~~~~~~~l~s~~------------~dg~v~~wd~~~~-~~~~~~~~~--------~~~~~~~~~~~--~~~~~~  104 (261)
                      ....+...|+|..+++++            .+|.|.++|..+. .....+...        ..|.. +.+..  ++...+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhG-i~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHG-ISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEE-EEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeee-eEEEECCCCcEEE
Confidence            346777788875555542            6899999998732 112222221        12332 23323  333222


Q ss_pred             eeeeecCCCCeEEEEEcCCCc-e---eeEEeecCCcceEEEEEEeCCCCceEEEEec-----------------CCCeEE
Q psy6859         105 TAAVSDQDSSRVHIYDCKGND-M---INMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-----------------DSSHVH  163 (261)
Q Consensus       105 ~~~~s~~~d~~i~i~d~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~d~~i~  163 (261)
                      .++-.+..+..|.+|++.... .   +..+... .-.....+...+++..  +++..                 ..|.|.
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~-~~~~pND~~v~~~G~f--yvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHF--YATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEE--EEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccC-CCCCCceEEEeCCCCE--EecCCcEeCCcccccchhhccCCccEEE
Confidence            222222346788888776532 2   2222221 2235678888888852  44432                 123444


Q ss_pred             EEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeecccccccCCeeeeeecccccceeecCCCccce
Q psy6859         164 IYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYP  242 (261)
Q Consensus       164 i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  242 (261)
                      .+|.   ++ +..+. ..-...+.++|+||++.|+.+ +..+.|..|++.....            ....+.+ ......
T Consensus       207 r~d~---~~-~~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~------------l~~~~~~-~~~g~P  268 (355)
T 3sre_A          207 YYSP---ND-VRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT------------LTPLRVL-SFDTLV  268 (355)
T ss_dssp             EECT---TC-CEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC------------EEEEEEE-ECSSEE
T ss_pred             EEEC---Ce-EEEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc------------EecCEEE-eCCCCC
Confidence            4443   32 33332 334557999999999877554 4678899999853100            0001111 113556


Q ss_pred             eeeeECC-CCceEEEeec
Q psy6859         243 SGLSFSP-DGNKFVTISM  259 (261)
Q Consensus       243 ~~~~~s~-~~~~l~s~~~  259 (261)
                      -.++..+ +|++.+++..
T Consensus       269 DGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          269 DNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             EEEEECTTTCCEEEEEES
T ss_pred             ceEEEeCCCCcEEEEecC
Confidence            7888888 5887776643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.89  E-value=0.0055  Score=48.68  Aligned_cols=198  Identities=8%  Similarity=-0.055  Sum_probs=111.3

Q ss_pred             eEEEEEcC---CCeEEEecCCCeEEEEeccCCceeeeEEeec---cccceeEEEE-------eeCCCEEEEEeCCC----
Q psy6859           6 ITHVVVTK---TDFVITASNDGHIKFWKKQEEGIEFVKHFRS---HLGVIHSICT-------NYNGTLLCTVASDK----   68 (261)
Q Consensus         6 v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~s~~~dg----   68 (261)
                      -..|+|.|   ++++++-...+.|++.|.+++  .....+..   .......++|       ++++++|+.+...+    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~--~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR--MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTT--EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCC--EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            46789997   344444444567888888775  33322222   1235789999       99998676666543    


Q ss_pred             ---cEEEEEccc-ccee-----eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcC-------CCce------
Q psy6859          69 ---AMKVFDVIN-FDMI-----NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK-------GNDM------  126 (261)
Q Consensus        69 ---~v~~wd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-------~~~~------  126 (261)
                         .|.+.+... ++..     ..+..-.++ ..+.+.+.+..++..   -..++.|..+|+.       ++..      
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p-~giavdp~~g~LYvt---d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQC-NGATIHPINGELYFN---SYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCC-CCEEECTTTCCEEEE---ETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCc-eEEEEcCCCCeEEEE---ECCCCEEEEEecccccccccCceeeccccc
Confidence               255555333 2221     122211222 344566655555443   2567889999987       4543      


Q ss_pred             -----eeE-EeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccc---eeecc-----C---------ccc
Q psy6859         127 -----INM-IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPL---HVLDR-----L---------HTK  183 (261)
Q Consensus       127 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~---~~~~~-----~---------~~~  183 (261)
                           ... +... .......++++|++.. ++++-.....|+.++.......+   ..+..     +         .-.
T Consensus       295 ~~~g~~~~l~~~~-~~~~p~~ia~~p~G~~-lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~  372 (496)
T 3kya_A          295 NNPNTFKQLFTIA-DPSWEFQIFIHPTGKY-AYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN  372 (496)
T ss_dssp             GCTTTEEEEEECS-SSSCCEEEEECTTSSE-EEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred             ccccccceeEecC-CCCCceEEEEcCCCCE-EEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence                 112 2221 2224578999999974 46666778899997765211111   12210     0         011


Q ss_pred             CeE-EEEEc-------CCCCEEEEEcCCCeEEEeec
Q psy6859         184 PVV-LIKFN-------PIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       184 ~v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~  211 (261)
                      ... .++..       +++.+.++-.....|+.++.
T Consensus       373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~  408 (496)
T 3kya_A          373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP  408 (496)
T ss_dssp             SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred             CCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence            234 45554       45666666667888999884

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.87  E-value=0.0044  Score=46.71  Aligned_cols=185  Identities=9%  Similarity=0.153  Sum_probs=107.0

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC----CC---EEEEEeC---CCcEEEEEcc--ccceee
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN----GT---LLCTVAS---DKAMKVFDVI--NFDMIN   82 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~s~~~---dg~v~~wd~~--~~~~~~   82 (261)
                      .+++.....+-+.+||++.   +.+..+..  +.++.+..-|+    ++   ++++..+   +++|.+|++.  +++ +.
T Consensus        41 s~ii~t~k~~gL~Vydl~G---~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDG---KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             CEEEEEETTTEEEEEETTS---CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             cEEEEEcCCCCEEEEcCCC---cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            4666667788999999954   55555653  55677766653    22   2233333   5789999773  333 43


Q ss_pred             eee-------cc-CcceeEEEE-eecCCceeeeeeecCCCCeEEEEEcC-------CCceeeEEeecCCcceEEEEEEeC
Q psy6859          83 MIK-------LD-FTPLTVECI-HYLGDAIPTAAVSDQDSSRVHIYDCK-------GNDMINMIKLDFTPLTVECIHYLG  146 (261)
Q Consensus        83 ~~~-------~~-~~~~~~~~~-~~~~~~~~~~~~s~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~  146 (261)
                      .+.       .. ..+...+.+ .+....+. + +....++.+..|++.       +.+.++.+....   .+..+...+
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~y-a-fV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs---q~EgcvvDd  189 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYY-A-MVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS---QTEGMAADD  189 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEE-E-EEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS---CEEEEEEET
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEE-E-EEECCCCeEEEEEEEeCCCCcccceEEEEecCCC---CcceEEEcC
Confidence            331       11 223323332 33333221 1 122778999999883       234566666543   567788887


Q ss_pred             CCCceEEEEecCCCeEEEEEccCC----Cccceeec-cCcccCeEEEEE--cCCCC-EEEEEc-CCCeEEEeecc
Q psy6859         147 DAIPTAAVSDQDSSHVHIYDCKGN----GTPLHVLD-RLHTKPVVLIKF--NPIYQ-VVVSVD-KAGILEYWSGY  212 (261)
Q Consensus       147 ~~~~~~~~~~~~d~~i~i~d~~~~----~~~~~~~~-~~~~~~v~~~~~--~~~~~-~l~~~~-~dg~i~iwd~~  212 (261)
                      ....  +..+-++..|..|+.+..    .+.+..+. ......+..|++  .++++ +|++++ .+.++.+||.+
T Consensus       190 ~~g~--Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          190 EYGR--LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTTE--EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCCe--EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            7664  666666766666664422    23444432 122346888888  45555 555444 77899999985

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.80  E-value=0.0057  Score=45.89  Aligned_cols=182  Identities=8%  Similarity=0.003  Sum_probs=104.9

Q ss_pred             CCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceee-eeeccCcceeEEEEeecC
Q psy6859          23 DGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMIN-MIKLDFTPLTVECIHYLG  100 (261)
Q Consensus        23 d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~  100 (261)
                      ...|+..+++....+....+. .......+.|.+.+..|+ +-...+.|..+++....... .+.........+.+.+.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            468888888765212222222 223567899998544444 44467789889987553211 112111222345555444


Q ss_pred             CceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe-cCCCeEEEEEccCCCccceeecc
Q psy6859         101 DAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QDSSHVHIYDCKGNGTPLHVLDR  179 (261)
Q Consensus       101 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~  179 (261)
                      ..++..   -...+.|.++++........+..  .......++++|.+.. ++++. +..+.|..+++.  +.....+..
T Consensus        91 g~ly~~---d~~~~~I~~~~~dG~~~~~l~~~--~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d--G~~~~~~~~  162 (318)
T 3sov_A           91 EKLYWT---DSETNRIEVSNLDGSLRKVLFWQ--ELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD--GSSRFIIIN  162 (318)
T ss_dssp             TEEEEE---ETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETT--SCSCEEEEC
T ss_pred             CeEEEE---ECCCCEEEEEECCCCcEEEEEeC--CCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcC--CCCeEEEEE
Confidence            444332   25678899999876543322221  2234578899986554 24443 235788888875  333333321


Q ss_pred             CcccCeEEEEEcCCCCEEEEE-cCCCeEEEeeccc
Q psy6859         180 LHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYK  213 (261)
Q Consensus       180 ~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~  213 (261)
                      ..-...+.|+++|++..|+.+ ...+.|..+|+..
T Consensus       163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            223456899999977766544 4678899998753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.79  E-value=0.0053  Score=45.48  Aligned_cols=190  Identities=7%  Similarity=0.037  Sum_probs=90.4

Q ss_pred             CCeEEEec-CC-----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----CcEEEEEccccc---
Q psy6859          14 TDFVITAS-ND-----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----KAMKVFDVINFD---   79 (261)
Q Consensus        14 ~~~l~s~~-~d-----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~~wd~~~~~---   79 (261)
                      +.+++.|+ .+     ..+.++|..+.....+..+....  ........+++.++.|+.+     ..+.+||+.+.+   
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR--RYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhh--ccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            34666666 33     36788888876444433332211  1112223466677777754     468899988766   


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeee-eeecC-CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTA-AVSDQ-DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ....-..+...........+ +.++.. ...+. ....+.+||+.+.+-...-........ .++... ++.  +++.|+
T Consensus        93 W~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~--iyv~GG  167 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGATTLG-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVVA-SGV--IYCLGG  167 (301)
T ss_dssp             CEEECCCSSCCBSCEEEEET-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEEE-TTE--EEEECC
T ss_pred             eEECCCCCCCccceeEEEEC-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEEE-CCE--EEEECC
Confidence            33322222221112222223 334333 11100 134688999887754333222211111 122222 232  345554


Q ss_pred             CC-----CeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeecccc
Q psy6859         158 DS-----SHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYKQ  214 (261)
Q Consensus       158 ~d-----~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  214 (261)
                      .+     ..+.+||+. +.+-  +..+. ........+.+  ++++++.|+.+     ..+.+||+.++
T Consensus       168 ~~~~~~~~~~~~~d~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPH-TGHWTNVTPMA-TKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             BCSSCBCCCEEEEETT-TTEEEEECCCS-SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCcccceEEEEeCC-CCcEEeCCCCC-cccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            33     458889986 4421  22221 11111122222  56667777654     46888888654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.75  E-value=0.0075  Score=45.93  Aligned_cols=237  Identities=11%  Similarity=0.033  Sum_probs=114.2

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee---ccccceeEEEEeeC---CCEEEEEeC-C-----CcEE
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR---SHLGVIHSICTNYN---GTLLCTVAS-D-----KAMK   71 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~-d-----g~v~   71 (261)
                      .-..++|.| +++++ +..+|.|.+++  +...+.+..+.   ........|+++|+   +..|+.+.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            346899999 76544 55669999988  33223332221   12345789999998   445554443 2     5677


Q ss_pred             EEEccccc-----ee-eeee---ccCcceeEEEEeecCCceeeeeeec---------CCCCeEEEEEcCCC---------
Q psy6859          72 VFDVINFD-----MI-NMIK---LDFTPLTVECIHYLGDAIPTAAVSD---------QDSSRVHIYDCKGN---------  124 (261)
Q Consensus        72 ~wd~~~~~-----~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~---------~~d~~i~i~d~~~~---------  124 (261)
                      .++...+.     .+ ..+.   ...+....+.+.+++...++..-.+         +..+.|.-++....         
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            77776431     11 1122   1112234566777774333320000         01245666665431         


Q ss_pred             ---ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC-------eEEEEEccCC---------------Cccceeecc
Q psy6859         125 ---DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS-------HVHIYDCKGN---------------GTPLHVLDR  179 (261)
Q Consensus       125 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-------~i~i~d~~~~---------------~~~~~~~~~  179 (261)
                         .....+...  -.....++|+|+...+++.-.+.+.       .|.+..-...               ..++..+. 
T Consensus       189 ~~~~~~~i~a~G--~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-  265 (352)
T 2ism_A          189 RRGARPEVYSLG--HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-  265 (352)
T ss_dssp             CTTSCTTEEEEC--CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred             CCCCCccEEEEc--CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence               011111111  1134677888843322222222222       2333321100               01223332 


Q ss_pred             CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         180 LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       180 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                       +......++| .+|.++++.-..+.|...++........        .......+ .-...+..+++.|||.++++..
T Consensus       266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~--------~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR--------VLRVETAL-SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE--------EEEEEEEE-ESSCCEEEEEECTTSCEEEEEC
T ss_pred             -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee--------ecchheec-ccCCCeeEEEECCCCcEEEEEe
Confidence             2234567787 5677666666677777777653210000        00011111 1235789999999998776653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.73  E-value=0.0088  Score=46.23  Aligned_cols=148  Identities=9%  Similarity=0.124  Sum_probs=89.9

Q ss_pred             eecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC--CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc--
Q psy6859          97 HYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF--TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT--  172 (261)
Q Consensus        97 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--  172 (261)
                      ..++..++.+     .++.|+.-++.....-+.+....  .-..+..+..+|++..+ ++.  .+..|.|..+. .+.  
T Consensus        29 ~~n~t~i~~a-----~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lL-Al~--g~~~V~Vv~LP-~~~~~   99 (452)
T 3pbp_A           29 SQNGTRIVFI-----QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLL-CLF--NDNEIFVMEVP-WGYSN   99 (452)
T ss_dssp             ETTTTEEEEE-----ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEE-EEE--CSSEEEEEECC-TTCSC
T ss_pred             EcCCCEEEEE-----ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEE-EEe--cCCeEEEEEec-Ccccc
Confidence            3344444443     56778877777554455555542  11145678999999852 222  36789998886 221  


Q ss_pred             --------cc--eeeccC-----cccCeEEEEEcCCC---CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859         173 --------PL--HVLDRL-----HTKPVVLIKFNPIY---QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       173 --------~~--~~~~~~-----~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                              ++  +.+..+     ...+|..+.|+|-+   ..|++-..|+.|++||+.. .+..|.  .++..  ...+.
T Consensus       100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~-s~~~P~--~L~k~--~~~fg  174 (452)
T 3pbp_A          100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN-SQEKPI--VLNKP--NNSFG  174 (452)
T ss_dssp             CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC-TTSCCE--EESCC--CSEEE
T ss_pred             CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc-CCCCCc--chhcc--ccccC
Confidence                    11  122201     25679999999965   4788888999999999975 222232  11111  11223


Q ss_pred             cCCCccceeeeeECCCCceEEEee
Q psy6859         235 FAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       235 ~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      +......|.+++|.+++-.|...+
T Consensus       175 ~d~~~~ev~S~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          175 LDARVNDITDLEFSKDGLTLYCLN  198 (452)
T ss_dssp             SCSSCCCEEEEEECTTSSCEEEEE
T ss_pred             CCcccceEEEEEEcCCCcEEEEEe
Confidence            334457889999999887766644

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.72  E-value=0.014  Score=48.13  Aligned_cols=201  Identities=7%  Similarity=-0.057  Sum_probs=109.6

Q ss_pred             CeEEEEEcC-CCe-EEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEE-EEEeCCCcEEEEEcccccee
Q psy6859           5 PITHVVVTK-TDF-VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         5 ~v~~~~~~~-~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ....|+|++ ++. +++-...+.|..++++... .....+...-.....+++.+.+..| ++-...+.|.+.++......
T Consensus        41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-ceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            456888887 544 4454556788888877541 1122233222467899999855544 44456788999998643322


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      ..+.........+.+.+.+..++..-.  +..+.|...++...........  .-.....++++++... ++++-...+.
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~dG~~~~~l~~~--~~~~P~Glald~~~~~-LY~aD~~~~~  194 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMDGSSRFIIINS--EIYWPNGLTLDYEEQK-LYWADAKLNF  194 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEEEECS--SCSSEEEEEEETTTTE-EEEEETTTCC
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECCCCceEEEEeC--CCCCCcEEEEEccCCE-EEEEeCCCCe
Confidence            222122222345566665555544311  2246777777765433333221  2235678999987664 3566666788


Q ss_pred             EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      |..+|+. .. ..+.+.........+|++..+ .+.++-...+.|...|..++
T Consensus       195 I~~~~~d-G~-~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          195 IHKSNLD-GT-NRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             EEEESSS-CC-EEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred             EEEecCC-CC-ccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence            9999986 32 222221012222356777655 34444456778888887654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.72  E-value=0.014  Score=48.15  Aligned_cols=198  Identities=6%  Similarity=-0.081  Sum_probs=118.9

Q ss_pred             CeEEEEEcC-C-CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEE-EEEeCCCcEEEEEcccccee
Q psy6859           5 PITHVVVTK-T-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         5 ~v~~~~~~~-~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~~~~   81 (261)
                      ....|+|++ + .++++-..++.|..++++...  ....+.........+++.+.+..| ++-...+.|.+.++......
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~--~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~  115 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSA--LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ  115 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCC--cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence            466899998 4 455566677899988887642  222232222456889998755555 44445678999998543322


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      ..+.........+.+.+....++..-.  +..+.|...++..........   .-.....+++++++.. ++++-...+.
T Consensus       116 ~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~l~~---~~~~P~GlalD~~~~~-LY~aD~~~~~  189 (628)
T 4a0p_A          116 VLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRR-LYWTDLDTNL  189 (628)
T ss_dssp             EEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEEEEC---SCSSEEEEEEETTTTE-EEEEETTTTE
T ss_pred             EEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEEEEC---CCCCcceEEEccccCE-EEEEECCCCE
Confidence            222122223345666665555544311  235688888887665433332   2235678999997765 4666667889


Q ss_pred             EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      |..+|+. .... ..+. ..-....++++.. +.+.++-...+.|...|..++
T Consensus       190 I~~~d~d-G~~~-~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          190 IESSNML-GLNR-EVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             EEEEETT-SCSC-EEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEcCC-CCce-EEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence            9999997 3322 3343 3334456788765 444455556788888886544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.68  E-value=0.0084  Score=44.44  Aligned_cols=191  Identities=10%  Similarity=0.121  Sum_probs=90.1

Q ss_pred             CCCeEEEecCC-----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC-----cEEEEEccccceee
Q psy6859          13 KTDFVITASND-----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK-----AMKVFDVINFDMIN   82 (261)
Q Consensus        13 ~~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~v~~wd~~~~~~~~   82 (261)
                      .+.+++.|+.+     ..+.+||..+.....+..+...... .+++ .-+++.++.|+.++     .+.+||+.+.+...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAA-VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEE-EECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            34566666654     3577888877644444333221111 1222 23667777777553     47788887765443


Q ss_pred             eeeccCcceeEEEEeecCCceeee-eeecCC---CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTA-AVSDQD---SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      .-..+...........++ .++.. ...+..   -..+.+||+.+.+-...-...... .-.++....+.   +++.|+.
T Consensus       139 ~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~---iyv~GG~  213 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVVGG-LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR-SGAGVGVLNNL---LYAVGGH  213 (302)
T ss_dssp             ECCCSSCCBSCEEEEETT-EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTE---EEEECCB
T ss_pred             cCCCCCcccCceEEEECC-EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc-ccccEEEECCE---EEEECCC
Confidence            322222211112222233 33332 111111   356889999877543322211111 11122222222   3555544


Q ss_pred             C-----CeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCCC-----eEEEeecccc
Q psy6859         159 S-----SHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG-----ILEYWSGYKQ  214 (261)
Q Consensus       159 d-----~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~  214 (261)
                      +     ..+.+||+. +.+  .+..+. ........+.  -++++++.|+.++     .+.+||+.++
T Consensus       214 ~~~~~~~~~~~yd~~-~~~W~~~~~~~-~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          214 DGPLVRKSVEVYDPT-TNAWRQVADMN-MCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             SSSSBCCCEEEEETT-TTEEEEECCCS-SCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCcccceEEEEeCC-CCCEeeCCCCC-CccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            3     468899987 442  222221 1111111222  2667777777553     4788888653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.67  E-value=0.012  Score=46.17  Aligned_cols=196  Identities=10%  Similarity=0.004  Sum_probs=108.0

Q ss_pred             CeEEEEEcC-CCeEEEecCC---Ce-EEEEeccCCceeeeEEeeccccceeEEEEee-CCCEEEEEeCCCcEEEEEcccc
Q psy6859           5 PITHVVVTK-TDFVITASND---GH-IKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-NGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d---~~-i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ....|++++ ++++++-...   .. +...+.... ......+. .-.....++++| ++.++++-..++.|+.+|..++
T Consensus       183 ~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~-~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g  260 (433)
T 4hw6_A          183 QCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG-FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG  260 (433)
T ss_dssp             CEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT-TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred             CccEEEECCCCCEEEEcCCCCcccceEEEEECCCC-eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence            467889998 7755444321   12 323332221 11111222 223457789999 6766666556788999998767


Q ss_pred             ceeeee-eccCc-ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCC--Cce--eeEEeec-C------------CcceE
Q psy6859          79 DMINMI-KLDFT-PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKG--NDM--INMIKLD-F------------TPLTV  139 (261)
Q Consensus        79 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--~~~--~~~~~~~-~------------~~~~~  139 (261)
                      .....+ ..... ....+.+.++++.++..   -...+.|..++...  +..  ...+... .            .-...
T Consensus       261 ~~~~~~~~~~~~~~~~~ia~dpdG~~LYva---d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P  337 (433)
T 4hw6_A          261 TLTEEEVMMDTKGSNFHIVWHPTGDWAYII---YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGP  337 (433)
T ss_dssp             CEEEEEEECSCCSSCEEEEECTTSSEEEEE---ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSE
T ss_pred             eEEEEEeccCCCCCcccEEEeCCCCEEEEE---eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCC
Confidence            652222 22111 12247778888745443   25678899988652  321  1122111 0            01124


Q ss_pred             EEEEE---------eCCCCceEEEEecCCCeEEEEEccCCCccceeeccC------------------cccCeEEEEEc-
Q psy6859         140 ECIHY---------LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL------------------HTKPVVLIKFN-  191 (261)
Q Consensus       140 ~~~~~---------~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------------------~~~~v~~~~~~-  191 (261)
                      ..+++         .+++  .++++-...+.|+.++.  .+.. .++. +                  .-.....|+++ 
T Consensus       338 ~giav~~n~~y~~dd~~g--~lyvaD~~n~~I~~~~~--~G~v-~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~  411 (433)
T 4hw6_A          338 NQGIFVKNEAYAGEEDEY--DFYFCDRDSHTVRVLTP--EGRV-TTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDM  411 (433)
T ss_dssp             EEEEEEECGGGTTSSCCE--EEEEEETTTTEEEEECT--TSEE-EEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred             ccEEEEccccccccCCCC--cEEEEECCCCEEEEECC--CCCE-EEEE-eCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence            56777         4444  34677777888998885  3432 2221 1                  11246789999 


Q ss_pred             CCCCEEEEEcCCCeEEEeec
Q psy6859         192 PIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       192 ~~~~~l~~~~~dg~i~iwd~  211 (261)
                      +++.++++-..+..|+.+++
T Consensus       412 ~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          412 KRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             TTTEEEEEEGGGTEEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEec
Confidence            66666666667778888775

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.63  E-value=0.019  Score=47.36  Aligned_cols=189  Identities=7%  Similarity=0.010  Sum_probs=112.6

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeeeeccCccee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMINMIKLDFTPLT   92 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~~~~~~~~~~~   92 (261)
                      ..+|+.+ ....|+..++++........+.+ -..+..++|++.+..|+.+ ..++.|..+++........+........
T Consensus         6 ~~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~   83 (628)
T 4a0p_A            6 EAFLLFS-RRADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE   83 (628)
T ss_dssp             CCEEEEE-ETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred             CcEEEEE-eCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence            3444443 45788888988653222222222 2457899999865555544 4678888888864433333332222233


Q ss_pred             EEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe-cCCCeEEEEEccCCC
Q psy6859          93 VECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QDSSHVHIYDCKGNG  171 (261)
Q Consensus        93 ~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~  171 (261)
                      .+++.+.++.++.+   -...+.|.+.++........+..  .-.....++++|.... ++++- +..+.|...++.  +
T Consensus        84 GlAvD~~~~~LY~t---D~~~~~I~v~~~dG~~~~~l~~~--~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~d--G  155 (628)
T 4a0p_A           84 GMAVDWLGKNLYWA---DTGTNRIEVSKLDGQHRQVLVWK--DLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMD--G  155 (628)
T ss_dssp             EEEEETTTTEEEEE---ETTTTEEEEEETTSTTCEEEECS--SCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETT--S
T ss_pred             eEEEEeCCCEEEEE---ECCCCEEEEEecCCCcEEEEEeC--CCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCC--C
Confidence            45565555554433   25678899999876543222221  2235689999986554 34443 335778888875  3


Q ss_pred             ccceeeccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeeccc
Q psy6859         172 TPLHVLDRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYK  213 (261)
Q Consensus       172 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~  213 (261)
                      .....+- ..-...+.|+++++++.|+.+ ...+.|..+|+..
T Consensus       156 ~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          156 SERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             CSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence            3344443 344567899999987766555 4667898888854

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.57  E-value=0.013  Score=43.76  Aligned_cols=187  Identities=11%  Similarity=0.011  Sum_probs=86.8

Q ss_pred             eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC----C-------CcEEEEEccccceeeee
Q psy6859          16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS----D-------KAMKVFDVINFDMINMI   84 (261)
Q Consensus        16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----d-------g~v~~wd~~~~~~~~~~   84 (261)
                      +++.|+  ..+.+||..+..... ..+..............+++.++.|+.    +       ..+..||..+++....-
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            455566  578899998874433 222211122222233457778888873    1       12778888776643322


Q ss_pred             eccCcceeEEEEeecCCceeee-eee----cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC-
Q psy6859          85 KLDFTPLTVECIHYLGDAIPTA-AVS----DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-  158 (261)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~-~~s----~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  158 (261)
                      ..+........... ++.++.. ...    ......+.+||+.+.+-...-...... .-.++....+.   +++.|+. 
T Consensus        84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~---iyv~GG~~  158 (315)
T 4asc_A           84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV-YGHTVLSHMDL---VYVIGGKG  158 (315)
T ss_dssp             CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTE---EEEECCBC
T ss_pred             CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc-cceeEEEECCE---EEEEeCCC
Confidence            22222111112222 3344333 110    011356889999876533221211111 11222222322   3455543 


Q ss_pred             -----CCeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCCC-----eEEEeecccc
Q psy6859         159 -----SSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG-----ILEYWSGYKQ  214 (261)
Q Consensus       159 -----d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~  214 (261)
                           -..+.+||.. +.+  .+..+. .....-..+.+  ++++++.|+.++     .+.+||+.++
T Consensus       159 ~~~~~~~~~~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          159 SDRKCLNKMCVYDPK-KFEWKELAPMQ-TARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             TTSCBCCCEEEEETT-TTEEEECCCCS-SCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CCCcccceEEEEeCC-CCeEEECCCCC-CchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence                 2458889987 432  222221 11111122222  567667776543     4778887653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.57  E-value=0.012  Score=43.51  Aligned_cols=189  Identities=10%  Similarity=0.101  Sum_probs=87.3

Q ss_pred             CeEEEecCC----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----CcEEEEEccccceeeeee
Q psy6859          15 DFVITASND----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----KAMKVFDVINFDMINMIK   85 (261)
Q Consensus        15 ~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~~~~   85 (261)
                      .+++.|+.+    ..+.++|..+.....+..+...... .+++ .-+++.++.|+.+     ..+.+||..+.+....-.
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            456666644    3578888887644433322211111 1222 2366677777754     358889988765443322


Q ss_pred             ccCcceeEEEEeecCCceeee-eeecC-CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC-----
Q psy6859          86 LDFTPLTVECIHYLGDAIPTA-AVSDQ-DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-----  158 (261)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-~~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  158 (261)
                      .+...........++ .++.. ...+. .-..+.+||+.+.+-...-...... .-.++....+.   +++.|+.     
T Consensus        95 ~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~---iyv~GG~~~~~~  169 (302)
T 2xn4_A           95 MRDRRSTLGAAVLNG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR-SSVGVGVVGGL---LYAVGGYDVASR  169 (302)
T ss_dssp             CSSCCBSCEEEEETT-EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC-BSCEEEEETTE---EEEECCEETTTT
T ss_pred             CCccccceEEEEECC-EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc-cCceEEEECCE---EEEEeCCCCCCC
Confidence            222211112222233 33332 11100 0135778998876543322221111 11222222222   2444432     


Q ss_pred             --CCeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeecccc
Q psy6859         159 --SSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYKQ  214 (261)
Q Consensus       159 --d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  214 (261)
                        ...+.+||+. +.+  .+..+. ........+.+  ++++++.|+.+     ..+.+||+.++
T Consensus       170 ~~~~~~~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          170 QCLSTVECYNAT-TNEWTYIAEMS-TRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             EECCCEEEEETT-TTEEEEECCCS-SCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             ccccEEEEEeCC-CCcEEECCCCc-cccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence              2458889886 442  222222 11111122222  56777777654     35888888654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.55  E-value=0.014  Score=43.39  Aligned_cols=190  Identities=9%  Similarity=0.032  Sum_probs=92.8

Q ss_pred             CCeEEEecCC----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC------CcEEEEEccccceeee
Q psy6859          14 TDFVITASND----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD------KAMKVFDVINFDMINM   83 (261)
Q Consensus        14 ~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~v~~wd~~~~~~~~~   83 (261)
                      +.+++.|+.+    ..+.+||..+.....+..+....... ++ ..-+++.++.|+.+      ..+.+||+.+.+....
T Consensus        56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~  133 (306)
T 3ii7_A           56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AA-CAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK  133 (306)
T ss_dssp             TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EE-EEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred             CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eE-EEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence            4566677654    56788888876444443332211111 12 22367777777765      4588999887764433


Q ss_pred             eeccCcceeEEEEeecCCceeee-eeecCC-----CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          84 IKLDFTPLTVECIHYLGDAIPTA-AVSDQD-----SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      -..+...........++ .++.. ...+..     -..+.+||+.+.+-...-...... .-.++....+.   +++.|+
T Consensus       134 ~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~---i~v~GG  208 (306)
T 3ii7_A          134 PSMLTQRCSHGMVEANG-LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR-KNHGLVFVKDK---IFAVGG  208 (306)
T ss_dssp             CCCSSCCBSCEEEEETT-EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTE---EEEECC
T ss_pred             CCCcCCcceeEEEEECC-EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh-hcceEEEECCE---EEEEeC
Confidence            22222212222222233 33333 111111     456889999887533322221111 11222222222   344544


Q ss_pred             CC-----CeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeecccc
Q psy6859         158 DS-----SHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYKQ  214 (261)
Q Consensus       158 ~d-----~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  214 (261)
                      .+     ..+.+||+. +.+  .+..+. ........+.+  ++++++.|+.+     ..+.+||+.++
T Consensus       209 ~~~~~~~~~~~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIK-LNEWKMVSPMP-WKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EETTEEBCCEEEEETT-TTEEEECCCCS-CCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCCCCCCceEEEeeCC-CCcEEECCCCC-CCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            32     458889987 432  222222 11112222333  66777777744     46788888653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.54  E-value=0.014  Score=43.23  Aligned_cols=186  Identities=10%  Similarity=0.040  Sum_probs=90.3

Q ss_pred             CCeEEEecCC-----CeEEEEeccCCc---eeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----CcEEEEEccccce
Q psy6859          14 TDFVITASND-----GHIKFWKKQEEG---IEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----KAMKVFDVINFDM   80 (261)
Q Consensus        14 ~~~l~s~~~d-----~~i~iw~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~~wd~~~~~~   80 (261)
                      +.+++.|+.+     ..+.+||..+..   .+.+..+....... +++ ..+++.++.|+.+     ..+.+||+.+.+.
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GAT-TLGDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEE-EECCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            5566667654     358888887765   44443333221111 222 2366677777654     3588899877654


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCC-----CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-----SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      ...-..+...........+ +.++..   |+.     ...+..||+.+.+-...-...... .-.++....+.   +++.
T Consensus       141 ~~~~~~p~~r~~~~~~~~~-~~iyv~---GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~---i~v~  212 (301)
T 2vpj_A          141 SMLGDMQTAREGAGLVVAS-GVIYCL---GGYDGLNILNSVEKYDPHTGHWTNVTPMATKR-SGAGVALLNDH---IYVV  212 (301)
T ss_dssp             EEEEECSSCCBSCEEEEET-TEEEEE---CCBCSSCBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTE---EEEE
T ss_pred             EECCCCCCCcccceEEEEC-CEEEEE---CCCCCCcccceEEEEeCCCCcEEeCCCCCccc-ccceEEEECCE---EEEE
Confidence            4332222221112222223 333333   122     356889998877543322221111 11122222222   3555


Q ss_pred             ecCC-----CeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeeccc
Q psy6859         156 DQDS-----SHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYK  213 (261)
Q Consensus       156 ~~~d-----~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~  213 (261)
                      |+.+     ..+.+||+. +.+  .+..+. ........+.+  ++++++.|+.+     ..+.+||+++
T Consensus       213 GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          213 GGFDGTAHLSSVEAYNIR-TDSWTTVTSMT-TPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             CCBCSSSBCCCEEEEETT-TTEEEEECCCS-SCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred             eCCCCCcccceEEEEeCC-CCcEEECCCCC-CcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCC
Confidence            5443     468899987 442  222221 11111122222  66777777655     3577888755

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.45  E-value=0.019  Score=42.69  Aligned_cols=190  Identities=6%  Similarity=-0.018  Sum_probs=88.7

Q ss_pred             CCeEEEecCC----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC----C-----CcEEEEEccccce
Q psy6859          14 TDFVITASND----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS----D-----KAMKVFDVINFDM   80 (261)
Q Consensus        14 ~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----d-----g~v~~wd~~~~~~   80 (261)
                      +.+++.|+.+    ..+.++|..+.....+..+...... .+++ ..++++++.|+.    +     ..+.+||+.+.+.
T Consensus        25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            4566667632    3678888887644444332211111 1222 236667777765    2     3688899877654


Q ss_pred             eeeeeccCcceeEEEEeecCCceeee-eeec-CCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTA-AVSD-QDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      ...-..+...........+ +.++.. ...+ ..-..+.+||+.+.+-...-........ .++... ++  .+++.|+.
T Consensus       103 ~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~--~iyv~GG~  177 (308)
T 1zgk_A          103 SPCAPMSVPRNRIGVGVID-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL-NR--LLYAVGGF  177 (308)
T ss_dssp             EECCCCSSCCBTCEEEEET-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT--EEEEECCB
T ss_pred             eECCCCCcCccccEEEEEC-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEEEE-CC--EEEEEeCC
Confidence            3322222211111122223 333333 1110 0125688999887653332222111111 122222 22  23455543


Q ss_pred             C-----CeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeecccc
Q psy6859         159 S-----SHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYKQ  214 (261)
Q Consensus       159 d-----~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  214 (261)
                      +     ..+.+||+. +.+  .+..+. .....-..+.+  ++++++.|+.+     ..+.+||+.++
T Consensus       178 ~~~~~~~~~~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          178 DGTNRLNSAECYYPE-RNEWRMITAMN-TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             CSSCBCCCEEEEETT-TTEEEECCCCS-SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCcCceEEEEeCC-CCeEeeCCCCC-CccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            3     458889886 432  122221 11111222223  56677777654     45888888664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.42  E-value=0.022  Score=42.63  Aligned_cols=194  Identities=7%  Similarity=0.037  Sum_probs=108.8

Q ss_pred             EEEEcC-CC-eEEEecCCCeEEEEeccCCceeeeEEeec----cc--cceeEEEE---eeCCCEEEEEe-----------
Q psy6859           8 HVVVTK-TD-FVITASNDGHIKFWKKQEEGIEFVKHFRS----HL--GVIHSICT---NYNGTLLCTVA-----------   65 (261)
Q Consensus         8 ~~~~~~-~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~----~~--~~v~~~~~---~~~~~~l~s~~-----------   65 (261)
                      +++|.+ .. ++++.-..++|..|+...+....+ .+.+    .+  ..+..|.|   .|+++++++..           
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            578887 44 455555789999999875432333 3332    11  13579999   58877777543           


Q ss_pred             --CCCcEEEEEcc---ccceeeeeeccC-------------cceeEEEEeecCCceeeeeeecCCC-CeEEEEEcCCCce
Q psy6859          66 --SDKAMKVFDVI---NFDMINMIKLDF-------------TPLTVECIHYLGDAIPTAAVSDQDS-SRVHIYDCKGNDM  126 (261)
Q Consensus        66 --~dg~v~~wd~~---~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~s~~~d-~~i~i~d~~~~~~  126 (261)
                        .+..|..+|+.   +++.+....+..             ....-+.+.++|+..++.    +.. +.|...+..... 
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~----s~~~~~I~rV~pdG~~-  170 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF----ALGMPAIARVSADGKT-  170 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE----EESSCEEEEECTTSCC-
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeC----CCCCCeEEEEeCCCCE-
Confidence              25779999998   787766554321             123345555666544443    334 556666655442 


Q ss_pred             eeEEeecC----CcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeecc---C---cccCeEEE-EEcCCCC
Q psy6859         127 INMIKLDF----TPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR---L---HTKPVVLI-KFNPIYQ  195 (261)
Q Consensus       127 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~---~~~~v~~~-~~~~~~~  195 (261)
                      +..+....    .......+.++|++.. +++..+ .+.+..+|+. ..... .+..   +   .-.....| ....+|+
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~-Liv~~~-~g~L~~fD~~-~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~  246 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNK-LIAFGG-PRALTAFDVS-KPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNE  246 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTE-EEEESS-SSSEEEEECS-SSSCC-CEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCE-EEEEcC-CCeEEEEcCC-CCcce-eecccccCCcccccCcccccccccCCE
Confidence            22222111    1123568999999975 355555 9999999987 32220 1210   1   11223443 3345777


Q ss_pred             E-EEEEcCCCeEEEeec
Q psy6859         196 V-VVSVDKAGILEYWSG  211 (261)
Q Consensus       196 ~-l~~~~~dg~i~iwd~  211 (261)
                      . |++....+.+.+.+.
T Consensus       247 vllV~~~~~~~~~l~S~  263 (334)
T 2p9w_A          247 SVLVGARAPYAISFRSW  263 (334)
T ss_dssp             EEEEEEETTEEEEEECS
T ss_pred             EEEEEcCCCCEEEEECC
Confidence            6 455555665555543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.37  E-value=0.028  Score=42.84  Aligned_cols=235  Identities=10%  Similarity=-0.017  Sum_probs=114.8

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee---ccccceeEEEEeeC---CCEEEEEeC----C----Cc
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR---SHLGVIHSICTNYN---GTLLCTVAS----D----KA   69 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~----d----g~   69 (261)
                      .-..|+|.| ++ |+.+..+|.|++++. ++. +.+..+.   ........|+++|+   +..|+.+..    +    ..
T Consensus        30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           30 VPWSIAPLGGGR-YLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             CEEEEEEEETTE-EEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            356889999 65 555566699998873 332 3333221   12345789999997   445544433    2    56


Q ss_pred             EEEEEcccc--c-----ee-eeee-ccCcceeEEEEeecCCceeeeeeec---------CCCCeEEEEEcCCCc------
Q psy6859          70 MKVFDVINF--D-----MI-NMIK-LDFTPLTVECIHYLGDAIPTAAVSD---------QDSSRVHIYDCKGND------  125 (261)
Q Consensus        70 v~~wd~~~~--~-----~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~---------~~d~~i~i~d~~~~~------  125 (261)
                      |..|+....  .     .+ ..+. ...+....+.+.+++...++..-.+         ...+.|.-++....-      
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            777776543  1     11 1121 1112234566677775443320000         012455555554320      


Q ss_pred             -eeeEEeecCCcceEEEEEEeC-CCCceEEEEecC-CC--eEEEEEccCC---------------CccceeeccCcccCe
Q psy6859         126 -MINMIKLDFTPLTVECIHYLG-DAIPTAAVSDQD-SS--HVHIYDCKGN---------------GTPLHVLDRLHTKPV  185 (261)
Q Consensus       126 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-d~--~i~i~d~~~~---------------~~~~~~~~~~~~~~v  185 (261)
                       ....+... . .....++|+| ++. + +++-.. +.  .|.+......               ..++..+. ......
T Consensus       187 ~~~~i~a~G-~-rnp~Gla~d~~~g~-l-~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~~ap  261 (354)
T 3a9g_A          187 PNSPIWSYG-H-RNPQGIDWHRASGV-M-VATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SETWAP  261 (354)
T ss_dssp             TTCCEEEEC-C-SCCCEEEECTTTCC-E-EEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCCE
T ss_pred             CCCcEEEEc-c-CCcceEEEeCCCCC-E-EEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CCCcCC
Confidence             00111111 1 1235788888 454 2 333221 11  2333321100               01233331 123456


Q ss_pred             EEEEEc-------CCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         186 VLIKFN-------PIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       186 ~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      ..++|.       .+|.++++.-..+.|...++.....           .......+.+....+..+++.|||.+.++..
T Consensus       262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~-----------~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNME-----------VRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGC-----------EEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCc-----------ccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            788883       5677777766777888887753100           0000111222245788999999998766653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.22  E-value=0.077  Score=44.89  Aligned_cols=191  Identities=12%  Similarity=-0.005  Sum_probs=102.2

Q ss_pred             CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEe-eccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHF-RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      +.|++|.-....++-.|..+| +..||-...  +..... ......|.++....++ .|..++.+| +..||..+.+...
T Consensus        22 n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~--~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~   96 (758)
T 3ott_A           22 SVVSCFLQDSEGLIWIGSNKG-LFSYDGYST--QQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ   96 (758)
T ss_dssp             CCEEEEEECTTSCEEEEESSC-EEEECSSCE--EECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred             ceEEEEEECCCCCEEEEECCC-ccccCCCce--EEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence            568888887744566677776 445553221  111100 1123458888776666 566666655 7889987764432


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe--ecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK--LDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ........+..  +......+..+    +.+ .+..+|..+++......  .......+.++....++.   +..++. +
T Consensus        97 ~~~~~~~~i~~--i~~~~g~lWig----t~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~---lWigt~-~  165 (758)
T 3ott_A           97 PETDFPTDVRT--MALQGDTLWLG----ALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ---IYVGTY-N  165 (758)
T ss_dssp             CSCCCCSCEEE--EEEETTEEEEE----ETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC---EEEEET-T
T ss_pred             cccCCCceEEE--EEecCCcEEEE----cCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC---EEEEeC-C
Confidence            11111111222  22234445544    344 68889987665332201  111234577887777775   334444 4


Q ss_pred             eEEEEEccCCCccceeeccC-----cccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRL-----HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      -+..||.. +.+. ..+...     ....|.++...+++..|..|.. +-+..+|..+
T Consensus       166 Gl~~~~~~-~~~~-~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~  220 (758)
T 3ott_A          166 GLCRYIPS-NGKF-EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST  220 (758)
T ss_dssp             EEEEEETT-TTEE-EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred             CHhhCccC-CCce-EEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence            57788875 4432 222101     1234888888887765555554 3477888754

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.17  E-value=0.053  Score=42.02  Aligned_cols=148  Identities=11%  Similarity=0.194  Sum_probs=93.2

Q ss_pred             eeCCCEEEEEeCCCcEEEEEccccceeeeeecc----CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc-----
Q psy6859          55 NYNGTLLCTVASDKAMKVFDVINFDMINMIKLD----FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND-----  125 (261)
Q Consensus        55 ~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-----  125 (261)
                      ..+++.++.+ .++.||.-++......+.++.+    ...+..+.++++|+.++..     .+..|.+..+..+.     
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-----g~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-----NDNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-----CSSEEEEEECCTTCSCCCC
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-----cCCeEEEEEecCccccCcc
Confidence            3466666664 4467888887755445555544    2235567888888877765     67899999887321     


Q ss_pred             -------eeeEEeecC----CcceEEEEEEeCCCCc-eEEEEecCCCeEEEEEccCC-Cccceeec--------cCcccC
Q psy6859         126 -------MINMIKLDF----TPLTVECIHYLGDAIP-TAAVSDQDSSHVHIYDCKGN-GTPLHVLD--------RLHTKP  184 (261)
Q Consensus       126 -------~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~-~~~~~~~~--------~~~~~~  184 (261)
                             ..+.+....    .+..|..+.|+|-+.. ..+++-..|+.|++||+... .++. .+.        ......
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e  181 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND  181 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence                   112233221    2457999999997543 12555567999999999831 1232 222        123367


Q ss_pred             eEEEEEcCCCCEEEE--EcCCCeEEEe
Q psy6859         185 VVLIKFNPIYQVVVS--VDKAGILEYW  209 (261)
Q Consensus       185 v~~~~~~~~~~~l~~--~~~dg~i~iw  209 (261)
                      |.+++|.+++-.|+.  .++.|.|+-.
T Consensus       182 v~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          182 ITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            899999998875655  5588877543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.12  E-value=0.053  Score=41.22  Aligned_cols=196  Identities=16%  Similarity=0.136  Sum_probs=104.2

Q ss_pred             EEEEEcCCCeEEEec-------------CCCeEEEEeccCC--ceeeeEEeec-----cccceeEEEEee--CCC-EEEE
Q psy6859           7 THVVVTKTDFVITAS-------------NDGHIKFWKKQEE--GIEFVKHFRS-----HLGVIHSICTNY--NGT-LLCT   63 (261)
Q Consensus         7 ~~~~~~~~~~l~s~~-------------~d~~i~iw~~~~~--~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~l~s   63 (261)
                      -.++..|...+++++             .+|.|.++|.++.  ..+.+ .+.+     ..-....+.+.+  +++ +|+.
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            355666733444443             6899999998743  22222 2222     223567777766  454 4444


Q ss_pred             Ee-C--CCcEEEEEccccc----eeeeeecc-CcceeEEEEeecCCceeeee--ee-----------cCCCCeEEEEEcC
Q psy6859          64 VA-S--DKAMKVFDVINFD----MINMIKLD-FTPLTVECIHYLGDAIPTAA--VS-----------DQDSSRVHIYDCK  122 (261)
Q Consensus        64 ~~-~--dg~v~~wd~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~s-----------~~~d~~i~i~d~~  122 (261)
                      +. .  +.++.+|++....    .+..+... ........+.+++...++-.  ++           +...+.|.-+|. 
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence            43 2  4678888876532    22222211 12234455556655333210  11           012355666665 


Q ss_pred             CCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcC-CCCEEEE
Q psy6859         123 GNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNP-IYQVVVS  199 (261)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~  199 (261)
                       ++.......   -.....++|+|++.. ++++-+..+.|..|++...+..  .+.+.  .....-.+++++ +|++.++
T Consensus       211 -~~~~~~~~~---l~~pNGia~spDg~~-lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lwva  283 (355)
T 3sre_A          211 -NDVRVVAEG---FDFANGINISPDGKY-VYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLWVG  283 (355)
T ss_dssp             -TCCEEEEEE---ESSEEEEEECTTSSE-EEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEEEE
T ss_pred             -CeEEEeecC---CcccCcceECCCCCE-EEEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEEEE
Confidence             332222221   124578999999985 4566667899999999733332  22332  245667889999 5987665


Q ss_pred             EcCC-CeEEEeec
Q psy6859         200 VDKA-GILEYWSG  211 (261)
Q Consensus       200 ~~~d-g~i~iwd~  211 (261)
                      +..+ +.|..|+.
T Consensus       284 ~~~~g~~v~~~~P  296 (355)
T 3sre_A          284 CHPNGMRIFFYDA  296 (355)
T ss_dssp             EESCHHHHHSCCT
T ss_pred             ecCCceEEEEECC
Confidence            5434 33444443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.12  E-value=0.047  Score=40.56  Aligned_cols=186  Identities=8%  Similarity=0.014  Sum_probs=87.5

Q ss_pred             CCeEEEecC----C-----CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-----CcEEEEEccccc
Q psy6859          14 TDFVITASN----D-----GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-----KAMKVFDVINFD   79 (261)
Q Consensus        14 ~~~l~s~~~----d-----~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~v~~wd~~~~~   79 (261)
                      +.+++.|+.    +     ..+.+||..+...+.+..+....... +++ .-+++.++.|+.+     ..+.+||+.+.+
T Consensus        71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVG-VIDGHIYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEE-EETTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred             CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEE-EECCEEEEEcCCCCCcccccEEEECCCCCe
Confidence            456666665    2     35778888776444443332211111 222 2366677777643     358889988765


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCC-----CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD-----SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      ....-..+........... ++.++..   |+.     ...+.+||+.+.+-...-...... .-.++.... +.  +++
T Consensus       149 W~~~~~~p~~r~~~~~~~~-~~~iyv~---GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~-~~--iyv  220 (308)
T 1zgk_A          149 WHLVAPMLTRRIGVGVAVL-NRLLYAV---GGFDGTNRLNSAECYYPERNEWRMITAMNTIR-SGAGVCVLH-NC--IYA  220 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE-TTEEEEE---CCBCSSCBCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEET-TE--EEE
T ss_pred             EeECCCCCccccceEEEEE-CCEEEEE---eCCCCCCcCceEEEEeCCCCeEeeCCCCCCcc-ccceEEEEC-CE--EEE
Confidence            4433222222111122222 3334333   122     356889998876533221111111 111222222 22  355


Q ss_pred             EecCC-----CeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeeccc
Q psy6859         155 SDQDS-----SHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYK  213 (261)
Q Consensus       155 ~~~~d-----~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~  213 (261)
                      .|+.+     ..+.+||+. +.+  .+..+. ........+.+  ++++++.|+.+     ..+.+||+.+
T Consensus       221 ~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          221 AGGYDGQDQLNSVERYDVE-TETWTFVAPMK-HRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             ECCBCSSSBCCCEEEEETT-TTEEEECCCCS-SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             EeCCCCCCccceEEEEeCC-CCcEEECCCCC-CCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCC
Confidence            55443     568899987 442  222221 11111122222  56777777644     3567788754

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.08  E-value=0.077  Score=42.28  Aligned_cols=157  Identities=11%  Similarity=-0.011  Sum_probs=88.8

Q ss_pred             eeEEEEee-CCCEEEEEeC-CCcEEEEEccccceeeeeeccC---cceeEEEE-------eecCCceeeeeeecCCC---
Q psy6859          49 IHSICTNY-NGTLLCTVAS-DKAMKVFDVINFDMINMIKLDF---TPLTVECI-------HYLGDAIPTAAVSDQDS---  113 (261)
Q Consensus        49 v~~~~~~~-~~~~l~s~~~-dg~v~~wd~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~s~~~d---  113 (261)
                      ...|+|+| +...|+.+.. .+.|++.|+.++..........   .....+++       .++++.++...   ..+   
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad---~~~~~~  217 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI---DYDGKG  217 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE---CCCTTG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEe---CCCCCc
Confidence            35789997 3444554443 4678888987766554443321   22455666       67777555441   222   


Q ss_pred             ---CeEEEEEcCC-Ccee-----eEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC------CCcc-----
Q psy6859         114 ---SRVHIYDCKG-NDMI-----NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG------NGTP-----  173 (261)
Q Consensus       114 ---~~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~------~~~~-----  173 (261)
                         ..|.+++... +...     ..+....   ....++.+|+... ++++...++.|..+|+..      ++..     
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~---~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~  293 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAAYK---QCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV  293 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEEES---CCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred             ccCceEEEEecCCCCceeecccceeeccCC---CceEEEEcCCCCe-EEEEECCCCEEEEEecccccccccCceeecccc
Confidence               2366666443 2221     2222111   2356778886554 466667788999999861      1221     


Q ss_pred             ------cee-eccCcccCeEEEEEcCCCCEEEE-EcCCCeEEEeecc
Q psy6859         174 ------LHV-LDRLHTKPVVLIKFNPIYQVVVS-VDKAGILEYWSGY  212 (261)
Q Consensus       174 ------~~~-~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~  212 (261)
                            ... +..+.......|+|+|+|++|+. -.....|+.++..
T Consensus       294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                  111 21123345689999999996544 4567788886653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.07  E-value=0.061  Score=40.84  Aligned_cols=68  Identities=7%  Similarity=0.015  Sum_probs=36.3

Q ss_pred             CCCeEEEecC-CCeEEEEeccC--CceeeeEEee-ccccceeEEEEeeCCCEEEEEeC-C---------CcEEEEEcccc
Q psy6859          13 KTDFVITASN-DGHIKFWKKQE--EGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVAS-D---------KAMKVFDVINF   78 (261)
Q Consensus        13 ~~~~l~s~~~-d~~i~iw~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~-d---------g~v~~wd~~~~   78 (261)
                      .+.+++.|+. ...+.++|...  .....+..+. ..... .+++ .-++++++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-ATSA-FIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS-CEEE-EETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc-ceEE-EECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            3555566654 34678888863  3333333332 11111 1222 236667777765 2         46889998876


Q ss_pred             ceee
Q psy6859          79 DMIN   82 (261)
Q Consensus        79 ~~~~   82 (261)
                      +...
T Consensus        97 ~W~~  100 (357)
T 2uvk_A           97 SWVK  100 (357)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            5443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.02  E-value=0.061  Score=40.12  Aligned_cols=187  Identities=10%  Similarity=0.051  Sum_probs=82.4

Q ss_pred             eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC----CC-------cEEEEEccccceeeee
Q psy6859          16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS----DK-------AMKVFDVINFDMINMI   84 (261)
Q Consensus        16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----dg-------~v~~wd~~~~~~~~~~   84 (261)
                      +++.|+.  .+..||..+..... .................+++.++.|+.    ++       .+..||..+.+....-
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   94 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP   94 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred             hhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence            4555553  47899998874433 122211111222233457778888873    12       1677888776544322


Q ss_pred             eccCcceeEEEEeecCCceeee-eeec---CCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC--
Q psy6859          85 KLDFTPLTVECIHYLGDAIPTA-AVSD---QDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD--  158 (261)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~-~~s~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  158 (261)
                      ..+...........+ +.++.. ....   .....+.+||+.+.+-...-.... +..-.++... ++.  +++.|+.  
T Consensus        95 ~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~-~~~--iyv~GG~~~  169 (318)
T 2woz_A           95 PLPSARCLFGLGEVD-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-KVYGHNVISH-NGM--IYCLGGKTD  169 (318)
T ss_dssp             CBSSCBCSCEEEEET-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-CEESCEEEEE-TTE--EEEECCEES
T ss_pred             CCCccccccceEEEC-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-cccccEEEEE-CCE--EEEEcCCCC
Confidence            222211111122223 333332 1110   011357888988765333222111 1111122222 222  2444442  


Q ss_pred             ----CCeEEEEEccCCCc--cceeeccCcccCeEEEEEcCCCCEEEEEcCC-----CeEEEeecccc
Q psy6859         159 ----SSHVHIYDCKGNGT--PLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----GILEYWSGYKQ  214 (261)
Q Consensus       159 ----d~~i~i~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  214 (261)
                          -..+.+||.. +.+  .+..+. ........+.+  ++++++.|+.+     ..+.+||+.++
T Consensus       170 ~~~~~~~~~~yd~~-~~~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          170 DKKCTNRVFIYNPK-KGDWKDLAPMK-TPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             SSCBCCCEEEEETT-TTEEEEECCCS-SCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             CCCccceEEEEcCC-CCEEEECCCCC-CCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence                2458899987 442  122221 11111122222  56666666543     24667887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.83  E-value=0.09  Score=39.12  Aligned_cols=107  Identities=7%  Similarity=0.094  Sum_probs=52.7

Q ss_pred             CCeEEEecC-----C------CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC--------CcEEEEE
Q psy6859          14 TDFVITASN-----D------GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD--------KAMKVFD   74 (261)
Q Consensus        14 ~~~l~s~~~-----d------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--------g~v~~wd   74 (261)
                      +.+++.|+.     .      ..+.+||..+...+.+..+...... .+++. -+++.++.|+.+        ..+.+||
T Consensus        46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d  123 (315)
T 4asc_A           46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGE-ALNSIYVVGGREIKDGERCLDSVMCYD  123 (315)
T ss_dssp             CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEE-ETTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred             CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEE-ECCEEEEEeCCcCCCCCcccceEEEEC
Confidence            666777763     1      1266778777644333322211111 12222 266677777642        3588999


Q ss_pred             ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCC------CCeEEEEEcCCCce
Q psy6859          75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD------SSRVHIYDCKGNDM  126 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------d~~i~i~d~~~~~~  126 (261)
                      +.+.+....-..+...........+ +.++..   |+.      -..+.+||+.+.+-
T Consensus       124 ~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~---GG~~~~~~~~~~~~~yd~~~~~W  177 (315)
T 4asc_A          124 RLSFKWGESDPLPYVVYGHTVLSHM-DLVYVI---GGKGSDRKCLNKMCVYDPKKFEW  177 (315)
T ss_dssp             TTTTEEEECCCCSSCCBSCEEEEET-TEEEEE---CCBCTTSCBCCCEEEEETTTTEE
T ss_pred             CCCCcEeECCCCCCcccceeEEEEC-CEEEEE---eCCCCCCcccceEEEEeCCCCeE
Confidence            8876543322222222222222233 334333   122      25789999987643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.82  E-value=0.093  Score=39.10  Aligned_cols=110  Identities=12%  Similarity=0.108  Sum_probs=52.9

Q ss_pred             CCeEEEecC----CC-------eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC-------CcEEEEEc
Q psy6859          14 TDFVITASN----DG-------HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD-------KAMKVFDV   75 (261)
Q Consensus        14 ~~~l~s~~~----d~-------~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------g~v~~wd~   75 (261)
                      +.+++.|+.    ++       .+.++|..+.....+..+...... .+++. -+++.++.|+.+       ..+.+||+
T Consensus        57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~  134 (318)
T 2woz_A           57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDP  134 (318)
T ss_dssp             SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred             CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEE-ECCEEEEEcCccCCCCcccceEEEEeC
Confidence            667777773    12       166778777644433332221111 12222 366677777754       24778888


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCceeee-eeec--CCCCeEEEEEcCCCce
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDAIPTA-AVSD--QDSSRVHIYDCKGNDM  126 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~--~~d~~i~i~d~~~~~~  126 (261)
                      .+.+....-..+...........+ +.++.. ....  ..-..+.+||+.+.+-
T Consensus       135 ~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          135 VAAKWSEVKNLPIKVYGHNVISHN-GMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTTEEEEECCCSSCEESCEEEEET-TEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCCCEeECCCCCCcccccEEEEEC-CEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            776544332222221222222233 334333 1110  0134689999988753

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=96.78  E-value=0.077  Score=46.12  Aligned_cols=75  Identities=16%  Similarity=0.158  Sum_probs=53.5

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccC-----cceeEEEEeecCCceeeeeeecCCCCeEEEEEcC
Q psy6859          48 VIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDF-----TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK  122 (261)
Q Consensus        48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~  122 (261)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..+..     .........+.....+.+.++...++.+++|.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~  316 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN  316 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence            45667777788899999999999999999999888765321     1122233444445555666677778888888764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.63  E-value=0.35  Score=43.09  Aligned_cols=223  Identities=9%  Similarity=0.093  Sum_probs=111.5

Q ss_pred             eEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeC------CCEEEEEeC-CCcEEEEEcccc
Q psy6859           6 ITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYN------GTLLCTVAS-DKAMKVFDVINF   78 (261)
Q Consensus         6 v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~s~~~-dg~v~~wd~~~~   78 (261)
                      |...+.+. .+++.++ .+.+.+++++.+......... -...|.|+++.|.      +++++.|.. |++++++++.+.
T Consensus       516 I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l  592 (1158)
T 3ei3_A          516 ISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF  592 (1158)
T ss_dssp             CCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence            44444333 2444444 567777777754333333322 3467999998753      368999886 999999999877


Q ss_pred             ceeeeeeccC--cceeEEEEeecCCceeeeeeecCCCCeEEEEEcC--CCceeeE--EeecCCcceEEEEEEeCCCCceE
Q psy6859          79 DMINMIKLDF--TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCK--GNDMINM--IKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        79 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      +.+....+..  .|..++.....+...   .+.|-.||.+.-+.+.  +++....  ......|.....  +...+...+
T Consensus       593 ~~~~~~~L~~~~~p~si~l~~~~~~~~---L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~--~~~~~~~~V  667 (1158)
T 3ei3_A          593 ELLHKEMLGGEIIPRSILMTTFESSHY---LLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRT--FRSLSTTNV  667 (1158)
T ss_dssp             CEEEEEECCSSCCEEEEEEEEETTEEE---EEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEE--EESSSCEEE
T ss_pred             CeEEEEECCCCCCCcEEEEEEeCCCcE---EEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEE--EeeCCceeE
Confidence            6665544432  333333333322211   1233578887655543  4443322  222223333332  333343333


Q ss_pred             EEEecCCCeEEEEEccCCCccc-eeeccCcccCeE-EEEEcCCC--CEEEEEcCCCeEEEeecccccccCCeeeeeeccc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPL-HVLDRLHTKPVV-LIKFNPIY--QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKL  228 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~v~-~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  228 (261)
                      ++++  +....+|.-+  ++.. ..+   .-..+. ...|+...  .-++..+ ++.++|..++.-             .
T Consensus       668 ~a~s--~rp~liy~~~--~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~-------------~  726 (1158)
T 3ei3_A          668 FACS--DRPTVIYSSN--HKLVFSNV---NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEI-------------Q  726 (1158)
T ss_dssp             EEES--SSCEEEEESS--SSEEEEEB---SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCS-------------S
T ss_pred             EEEC--CCCEEEEEcC--CceEEecc---ChHHhceEeccCcccCCCcEEEEc-CCceEEEEeccc-------------C
Confidence            4443  3444444433  2221 111   112232 33454321  2344444 445999887431             0


Q ss_pred             ccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         229 DTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       229 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      .-.++.+. -...+..++++|+.+.++.+.
T Consensus       727 ~~~~~~ip-L~~Tprri~y~~~~~~~~v~~  755 (1158)
T 3ei3_A          727 KLHIRTVP-LYESPRKICYQEVSQCFGVLS  755 (1158)
T ss_dssp             SEEEEEEE-CSSEEEEEEEEGGGTEEEEEE
T ss_pred             CeeEEEEe-CCCCceEEEEcCCCCEEEEEE
Confidence            11222222 234678888888877665543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.60  E-value=0.36  Score=42.97  Aligned_cols=136  Identities=9%  Similarity=0.122  Sum_probs=71.9

Q ss_pred             cEEEEEccccceeeeeeccCcc--eeEEEEeecC---Cceeee-eee-c----CCCCeEEEEEcCCCceeeEEeecCCcc
Q psy6859          69 AMKVFDVINFDMINMIKLDFTP--LTVECIHYLG---DAIPTA-AVS-D----QDSSRVHIYDCKGNDMINMIKLDFTPL  137 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~-~~s-~----~~d~~i~i~d~~~~~~~~~~~~~~~~~  137 (261)
                      .+++.|..+.+.+..+++....  .++..+...+   ..++.+ ++. +    ...|.|.+|++..++.....+.. -.+
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~-v~g  886 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE-VKG  886 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE-ESS
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE-cCC
Confidence            3677777777766666554432  2222222221   223222 111 1    14688999999755433322222 344


Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      .+.+++--..  +  +++|- ..++++|++. ..+.++ .+..+-..|..+.....+.+++.|+.-..+.++..+
T Consensus       887 ~v~al~~~~g--~--Lla~i-g~~l~vy~l~-~~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~  954 (1158)
T 3ei3_A          887 AVYSMVEFNG--K--LLASI-NSTVRLYEWT-TEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK  954 (1158)
T ss_dssp             CEEEEEEETT--E--EEEEE-TTEEEEEEEC-TTSCEE-EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred             cCEEEeeeCC--E--EEEEc-CCEEEEEECC-CCceEE-EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence            6777775543  2  33333 5789999998 444444 210111123333343457788888877777776643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.27  E-value=0.25  Score=37.45  Aligned_cols=54  Identities=7%  Similarity=0.103  Sum_probs=28.8

Q ss_pred             CCCeEEEecC-C---------CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC
Q psy6859          13 KTDFVITASN-D---------GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD   67 (261)
Q Consensus        13 ~~~~l~s~~~-d---------~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d   67 (261)
                      .+.+++.|+. +         ..+.+||..+.....+.... ........+...++++++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence            3556666665 2         35788888876444443332 01111122223577788888754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.25  E-value=0.39  Score=39.62  Aligned_cols=159  Identities=8%  Similarity=-0.078  Sum_probs=93.1

Q ss_pred             cceeEEEEeeCCCEEEEE-eCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc
Q psy6859          47 GVIHSICTNYNGTLLCTV-ASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND  125 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~  125 (261)
                      ..+.+++|.+.+..|+.+ ...+.|+.+++........+.........+++.+.++.++..   -+..+.|.+.++....
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~t---D~~~~~I~v~~~~G~~  425 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWT---DTGTDRIEVTRLNGTM  425 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEE---ETTTTEEEEEETTSCS
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEE---eCCCCcEEEEeCCCCe
Confidence            346788998855555544 457788888876433222222222223345565544544433   2567889999987654


Q ss_pred             eeeEEeecCCcceEEEEEEeCCCCceEEEEe-cCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc-CC
Q psy6859         126 MINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD-KA  203 (261)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  203 (261)
                      . ..+.. ..-.....+++.|.... ++++- +....|...++.  +.....+....-...+.|++++++..|+.+. ..
T Consensus       426 ~-~~l~~-~~l~~P~~iavdp~~G~-ly~tD~g~~~~I~r~~~d--G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~  500 (619)
T 3s94_A          426 R-KILIS-EDLEEPRAIVLDPMVGY-MYWTDWGEIPKIERAALD--GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKT  500 (619)
T ss_dssp             C-EEEEC-TTCCSEEEEEEETTTTE-EEEEECSSSCEEEEEETT--SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             E-EEEEE-CCCCCeeeEEEEcCCCc-EEEecCCCCCEEEEEccC--CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCC
Confidence            3 23321 12335689999987443 34443 234677777775  3333333213345678999999777665554 56


Q ss_pred             CeEEEeeccc
Q psy6859         204 GILEYWSGYK  213 (261)
Q Consensus       204 g~i~iwd~~~  213 (261)
                      +.|..+++..
T Consensus       501 ~~I~~~~~dG  510 (619)
T 3s94_A          501 DKIEVMNTDG  510 (619)
T ss_dssp             TEEEEEESSS
T ss_pred             CEEEEEecCC
Confidence            7788888753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.25  E-value=0.26  Score=37.47  Aligned_cols=62  Identities=13%  Similarity=0.050  Sum_probs=37.4

Q ss_pred             cCeEEEEEcC-------CCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEE
Q psy6859         183 KPVVLIKFNP-------IYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFV  255 (261)
Q Consensus       183 ~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  255 (261)
                      ..+..+.|.+       +|+++++.-..+.|...++..+..           ..+ ...+......+..+++.|||.+++
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~-----------~~~-~~~~~~~~~rp~~v~~~pdG~lyv  338 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV-----------TED-GRILTDRGQRIRDVRTGPDGYLYV  338 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE-----------EEE-EEESGGGCCCEEEEEECTTSCEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE-----------eee-EEcccCCCCceeEEEECCCCcEEE
Confidence            4567788764       466777766777777777653210           000 011122235789999999998766


Q ss_pred             E
Q psy6859         256 T  256 (261)
Q Consensus       256 s  256 (261)
                      +
T Consensus       339 ~  339 (353)
T 2g8s_A          339 L  339 (353)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.23  E-value=0.1  Score=39.71  Aligned_cols=107  Identities=15%  Similarity=0.186  Sum_probs=59.5

Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec--cCcccCeEEEEEcCC---CCEEEEEcC-C-----CeE
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD--RLHTKPVVLIKFNPI---YQVVVSVDK-A-----GIL  206 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~i  206 (261)
                      ....+++.|++.  ++++ ...+.|++++ ......+..+.  .........|+++|+   +..|+.+.. .     +.|
T Consensus        32 ~P~~ia~~pdG~--l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           32 VPWALAFLPDGG--MLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             CEEEEEECTTSC--EEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CceEEEEcCCCe--EEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            457899999997  2444 4569999998 31222222221  022456899999998   555544332 2     567


Q ss_pred             EEeecccccccCCeeeeeecccccc-eeecC---CCccceeeeeECCCCceEEEee
Q psy6859         207 EYWSGYKQEFKFPKCVHFESKLDTD-LFEFA---KNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       207 ~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      ..++...+...          ..+. +..+.   ........++|.|||.+.++.+
T Consensus       108 ~r~~~~~~~~~----------~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGV----------LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEE----------EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcC----------ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            77776432110          0111 11122   1112346899999997776644

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.22  E-value=0.45  Score=39.90  Aligned_cols=198  Identities=10%  Similarity=0.080  Sum_probs=94.2

Q ss_pred             CCeEEEecCC----CeEEEEeccCCceeeeE-Eee---cccc-ceeEEEEee-CCCEEEEEeCCC------cEEEEEccc
Q psy6859          14 TDFVITASND----GHIKFWKKQEEGIEFVK-HFR---SHLG-VIHSICTNY-NGTLLCTVASDK------AMKVFDVIN   77 (261)
Q Consensus        14 ~~~l~s~~~d----~~i~iw~~~~~~~~~~~-~~~---~~~~-~v~~~~~~~-~~~~l~s~~~dg------~v~~wd~~~   77 (261)
                      +.+++.|+.+    ..+.+||..+.....+. .+.   .... .-.+++..+ +++.++.|+.++      .+.+||..+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            5667777653    45778888876544443 210   0111 112333333 777778877543      578899887


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCC--CeEEEEEcCCCceeeEEe---ecCCcceEEEEEEeCCCCceE
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS--SRVHIYDCKGNDMINMIK---LDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d--~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      .+....-..+............++.++..   |+.+  +.+.+||+.+..-...-.   .........++.+..+... +
T Consensus       478 ~~W~~~~~~p~~R~~h~~~~~~~~~iyv~---GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~-i  553 (695)
T 2zwa_A          478 REWSMIKSLSHTRFRHSACSLPDGNVLIL---GGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ-G  553 (695)
T ss_dssp             TEEEECCCCSBCCBSCEEEECTTSCEEEE---CCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE-E
T ss_pred             CcEEECCCCCCCcccceEEEEcCCEEEEE---CCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE-E
Confidence            65443322222112122222113333333   1222  279999998875332211   1111112223444544232 3


Q ss_pred             EEEecC-------CCeEEEEEccCCCcc-----ceeecc--CcccCeEEEEEcCCCCEEEEEcC--------CCeEEEee
Q psy6859         153 AVSDQD-------SSHVHIYDCKGNGTP-----LHVLDR--LHTKPVVLIKFNPIYQVVVSVDK--------AGILEYWS  210 (261)
Q Consensus       153 ~~~~~~-------d~~i~i~d~~~~~~~-----~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~iwd  210 (261)
                      ++.|+.       ...+..||+. +..-     ...+..  .....-.++....++++++.|+.        ...+.+||
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~-~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYD-AENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEEC-TTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EEECCcCCCCCeeeCcEEEEEcc-CCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence            455543       2458899987 5441     112210  01111112233333677777763        34588899


Q ss_pred             cccccc
Q psy6859         211 GYKQEF  216 (261)
Q Consensus       211 ~~~~~~  216 (261)
                      +.++..
T Consensus       633 ~~t~~W  638 (695)
T 2zwa_A          633 PLSETL  638 (695)
T ss_dssp             TTTTEE
T ss_pred             CCCCeE
Confidence            876433

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.013  Score=44.26  Aligned_cols=114  Identities=8%  Similarity=0.047  Sum_probs=68.4

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeecc-ccceeEEEEe--e-CCCEEEEE-eCCCcEEEEEccccceeeeeeccC
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH-LGVIHSICTN--Y-NGTLLCTV-ASDKAMKVFDVINFDMINMIKLDF   88 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~s~-~~dg~v~~wd~~~~~~~~~~~~~~   88 (261)
                      +..++.++.||.|.-.|.+++  +...+++.. ..++....-.  + ++..++.. ..||.|..++..+|.....+..+.
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG--~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNG--HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTT--EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCC--cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            357889999999999998887  666666543 1222221100  1 22333333 589999999988886555444321


Q ss_pred             cce-eEEEEe-----------ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec
Q psy6859          89 TPL-TVECIH-----------YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD  133 (261)
Q Consensus        89 ~~~-~~~~~~-----------~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~  133 (261)
                      ... ..+...           ..+..+    +.|+.++.+.-.|+++++.+..+...
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~V----y~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKV----YTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEE----EECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ceeccccccCCCceeecccccccCCEE----EEEecCCEEEEEECCCCcEEEEEecC
Confidence            100 001100           022233    33488999999999999998888654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.89  E-value=0.46  Score=37.19  Aligned_cols=196  Identities=10%  Similarity=0.082  Sum_probs=111.8

Q ss_pred             EEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeeeeecc
Q psy6859          10 VVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMINMIKLD   87 (261)
Q Consensus        10 ~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~   87 (261)
                      -.+| .+.+|.-. ..++.|+|+++.  +.++.+.-. ..|.--.|-.+. .|+-.+ +..|+-|++.. ..+.+.+..+
T Consensus        72 IMnP~~~iiALra-g~~lQiFnle~K--~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           72 IMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EECSSSSCEEEEE-TTEEEEEETTTT--EEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             eeCCCCcEEEEec-CCeEEEEchHHh--hhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence            3567 56666554 689999999987  666666533 456666776554 455544 35899999864 3455555532


Q ss_pred             ----CcceeEEEEeecCCceeeeeeecC---CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCce-EEEEec--
Q psy6859          88 ----FTPLTVECIHYLGDAIPTAAVSDQ---DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPT-AAVSDQ--  157 (261)
Q Consensus        88 ----~~~~~~~~~~~~~~~~~~~~~s~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--  157 (261)
                          ...+.....+++.++++.+.++..   -.|.+.+|..+.+. -+.++++  ......+....+.... ++.-+.  
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGh--aa~F~~~~~~g~~~~~~lf~fa~r~  222 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGH--AASFAQFKMEGNAEESTLFCFAVRG  222 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCS--EEEEEEEECTTCSSEEEEEEEEECS
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheee--eeeeEEEecCCCCCCceEEEEEEec
Confidence                223333344556666666555422   24678899987653 3333332  1122222222111111 111111  


Q ss_pred             -CCCeEEEEEccCC--Ccc-c--eeec-----cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         158 -DSSHVHIYDCKGN--GTP-L--HVLD-----RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       158 -~d~~i~i~d~~~~--~~~-~--~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                       ..+.+++.++...  +.+ .  +..+     .....-..++..++....++.-+.-|.|.+||++++
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg  290 (494)
T 1bpo_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG  290 (494)
T ss_dssp             TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred             CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc
Confidence             2378999998522  111 1  1111     122455678889998888888889999999999653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.85  E-value=0.77  Score=41.65  Aligned_cols=194  Identities=9%  Similarity=0.056  Sum_probs=103.1

Q ss_pred             EcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeeeeecc-
Q psy6859          11 VTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN-FDMINMIKLD-   87 (261)
Q Consensus        11 ~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~-   87 (261)
                      .+| .+.+|.-. ..++.|+++++.  ..+..+.- +.+|.--.|-.+. .|+-.+ +..|.-|++.. ..+++.+..+ 
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k--~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHh--hhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence            456 45555443 678999999876  45555443 3456656665443 444443 34799999963 2344444322 


Q ss_pred             ---CcceeEEEEeecCCceeeeeee---cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEe--CCCCceEEEE---e
Q psy6859          88 ---FTPLTVECIHYLGDAIPTAAVS---DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYL--GDAIPTAAVS---D  156 (261)
Q Consensus        88 ---~~~~~~~~~~~~~~~~~~~~~s---~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~  156 (261)
                         ...+......++.++++.+.++   +.-.|.+.+|..+.+. .+.++++.  .....+...  +.... ++.-   .
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha--~~F~~~~~~~~~~~~~-l~~f~~~~  222 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA--ASFAQFKMEGNAEEST-LFCFAVRG  222 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhH--hhhheeccCCCCCCce-EEEEEEec
Confidence               2333334445566676666554   2345888899887653 22222211  111111111  01000 1111   1


Q ss_pred             cCCCeEEEEEccCC--Cccce------ee-c-cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         157 QDSSHVHIYDCKGN--GTPLH------VL-D-RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       157 ~~d~~i~i~d~~~~--~~~~~------~~-~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      ...+.++|.++...  +.+..      .+ + ........++..++....+..-+.-|.+.++|+.++
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~  290 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG  290 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc
Confidence            11368889888522  11111      11 1 012334567788888788888888999999999764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.62  E-value=0.15  Score=38.82  Aligned_cols=108  Identities=16%  Similarity=0.131  Sum_probs=59.1

Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc-cceeec--cCcccCeEEEEEcCC---CCEEEEEcC----C----
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT-PLHVLD--RLHTKPVVLIKFNPI---YQVVVSVDK----A----  203 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~--~~~~~~v~~~~~~~~---~~~l~~~~~----d----  203 (261)
                      ....+++.|++.  ++++ ..++.|+++|.  .++ .+..+.  .........|+++|+   +..|+.+..    +    
T Consensus        30 ~P~~ia~~pdG~--l~V~-e~~g~I~~~d~--~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           30 VPWSIAPLGGGR--YLVT-ERPGRLVLISP--SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CEEEEEEEETTE--EEEE-ETTTEEEEECS--SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCeEEEEcCCCe--EEEE-eCCCEEEEEeC--CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            457899999986  3444 44699999974  443 222221  022356889999998   444443332    3    


Q ss_pred             CeEEEeecccccccCCeeeeeecccccce-eecC-CCccceeeeeECCCCceEEEee
Q psy6859         204 GILEYWSGYKQEFKFPKCVHFESKLDTDL-FEFA-KNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       204 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      ..|..|+........        ...+.+ ..+. ........++|.|||.++++.+
T Consensus       105 ~~v~r~~~~~~~~~~--------~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKL--------KEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEEECSSSCCE--------EEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             eEEEEEEECCCCcCc--------CccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            456667654321000        001111 1111 1112346899999998777654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.61  E-value=0.51  Score=35.74  Aligned_cols=147  Identities=9%  Similarity=-0.006  Sum_probs=76.5

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee--ee----ccCcceeEEEEeec---CCceeeeeeecCCCCeEE
Q psy6859          47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM--IK----LDFTPLTVECIHYL---GDAIPTAAVSDQDSSRVH  117 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~--~~----~~~~~~~~~~~~~~---~~~~~~~~~s~~~d~~i~  117 (261)
                      .....|+|.|||+++++--..|.|++++..+++....  +.    ........+.++++   +..++.. ++...++.|.
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~-yt~~~~~~v~  110 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY-FTSASDNRIV  110 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE-EECSSSEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE-EecCCCCEEE
Confidence            4568999999998777654489999998655543211  11    11222344566553   3334332 3333456666


Q ss_pred             EEEcCCCc--------eeeEEe-ec-CCcceEEEEEEeCCCCceEEEEec-------------CCCeEEEEEccCCCc--
Q psy6859         118 IYDCKGND--------MINMIK-LD-FTPLTVECIHYLGDAIPTAAVSDQ-------------DSSHVHIYDCKGNGT--  172 (261)
Q Consensus       118 i~d~~~~~--------~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~d~~i~i~d~~~~~~--  172 (261)
                      -|.+....        ....+. .. ........+.|.|++. + +++-+             ..|.|.-++..  ++  
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-L-yvt~Gd~~~~~~~qd~~~~~G~IlRi~~d--G~ip  186 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-L-YAGTGESGDTGLSQDRKSLGGKILRMTPD--GEPA  186 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-E-EEECBCTTCGGGTTCTTCSTTCEEEECTT--SSBC
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-E-EEEECCCCCCccccCCCCCCCEEEEEeCC--CCcc
Confidence            67665421        111111 11 1112345689999985 2 44422             13455555543  22  


Q ss_pred             ------cceeeccCcccCeEEEEEcCCCCEEEE
Q psy6859         173 ------PLHVLDRLHTKPVVLIKFNPIYQVVVS  199 (261)
Q Consensus       173 ------~~~~~~~~~~~~v~~~~~~~~~~~l~~  199 (261)
                            ....+..+|. ....++|+|+|++.++
T Consensus       187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~  218 (347)
T 3das_A          187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred             CCCCCCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence                  1112221443 3467899998875554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.60  E-value=0.097  Score=36.72  Aligned_cols=99  Identities=10%  Similarity=-0.067  Sum_probs=58.1

Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccC--------eEEEEEcCCCCEEEEEcCCCeEEEe
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKP--------VVLIKFNPIYQVVVSVDKAGILEYW  209 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~i~iw  209 (261)
                      .+..++|+|++.  +.+.  .+|.++-.+.. +.....=+  .....        -..+.|.|+|.+.++  .||.|.-+
T Consensus        42 ~~~~laf~P~G~--LYaV--~~G~Ly~~~~~-t~~~~~W~--~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~  112 (236)
T 1tl2_A           42 NFKFLFLSPGGE--LYGV--LNDKIYKGTPP-THDNDNWM--GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKA  112 (236)
T ss_dssp             TCSEEEECTTSC--EEEE--ETTEEEEESCC-CSTTCCHH--HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred             cceeEEECCCcc--EEEE--eCCeEEEECCC-CCCccccc--ccccEecccccccceEEEECCCCCEEEe--CCCEEEEe
Confidence            456899999886  2333  57776666654 32211111  11222        377899999987777  56988877


Q ss_pred             ecccccccCCeeeeeecccccceee----cCCCccceeeeeECCCCceEEEe
Q psy6859         210 SGYKQEFKFPKCVHFESKLDTDLFE----FAKNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       210 d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s~  257 (261)
                      +..++            .....+..    -..--..+..|.|.|+|.+.+..
T Consensus       113 ~pP~~------------~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          113 SPPQS------------DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             SCCCS------------TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             CCCcC------------CCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            75321            11111111    01112466899999999887766

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.43  E-value=0.11  Score=41.85  Aligned_cols=72  Identities=6%  Similarity=-0.115  Sum_probs=52.5

Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCC------cc-------ceeeccCcccCeEEEEEcCCCCEEEEEcCCC
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNG------TP-------LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAG  204 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  204 (261)
                      ....+..+||+.+ ++++|-.+.++.++|++ ..      +.       +.+.  ...-.....+|.++|....+-.-|.
T Consensus       324 sPHGv~vsPDGky-i~v~GKLsptvtV~d~~-k~~~~~~~k~~~~~~~~~ae~--e~GlGPlHt~Fd~~G~aYTtlfidS  399 (638)
T 3sbq_A          324 NPHGCNTSSDGKY-FIAAGKLSPTCSMIAID-KLPDLFAGKLADPRDVIVGEP--ELGLGPLHTTFDGRGNAYTTLFIDS  399 (638)
T ss_dssp             SCCCEEECTTSCE-EEEECTTSSBEEEEEGG-GHHHHHTTCCSCGGGGEEECC--BCCSCEEEEEECSSSEEEEEETTTT
T ss_pred             CCcceeeCCCCCE-EEEcCCCCCeEEEEEee-hhhhhhhccccCcccceEeec--cCCCcccEEEECCCCceEeeeeecc
Confidence            4467889999997 47778889999999997 31      11       1122  2344567789999996556666899


Q ss_pred             eEEEeeccc
Q psy6859         205 ILEYWSGYK  213 (261)
Q Consensus       205 ~i~iwd~~~  213 (261)
                      .|.-|++..
T Consensus       400 qvvkWni~~  408 (638)
T 3sbq_A          400 QVVKWNMEE  408 (638)
T ss_dssp             EEEEEEHHH
T ss_pred             eEEEEeccH
Confidence            999999864

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.25  E-value=0.63  Score=34.50  Aligned_cols=142  Identities=11%  Similarity=0.025  Sum_probs=74.8

Q ss_pred             EEEeeCCCEEEEEeCC--------------CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEE
Q psy6859          52 ICTNYNGTLLCTVASD--------------KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVH  117 (261)
Q Consensus        52 ~~~~~~~~~l~s~~~d--------------g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~  117 (261)
                      --+++++.+|+-+...              ..|+..++...+... +.  ..+  ...+++.++.++....+......|.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LD--PDP--CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EE--CSC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-ee--cCC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence            3457888888877543              356666765544222 22  111  2256677887776521113455677


Q ss_pred             EEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE
Q psy6859         118 IYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV  197 (261)
Q Consensus       118 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  197 (261)
                      ..++...... .+....  .    ..+++++..+ +.+......|...++. .+.....+. +   ... ..+.|++.+|
T Consensus       133 ~~~~dGs~~~-~lt~~~--~----~~~~~~g~~i-y~t~~g~~~Iy~~~l~-g~~~~~l~~-~---~~~-~~~~P~g~~i  198 (302)
T 3s25_A          133 RIRIDGEEKK-KIKNHY--L----FTCNTSDRYF-YYNNPKNGQLYRYDTA-SQSEALFYD-C---NCY-KPVVLDDTNV  198 (302)
T ss_dssp             EEETTSCCCE-EEESSC--C----CCSEEETTEE-EEECTTTCCEEEEETT-TTEEEEEEC-S---CEE-EEEEEETTEE
T ss_pred             EEECCCCCeE-EEeCCC--c----eEeeEECCEE-EEEeCCCceEEEEECC-CCCEEEEeC-C---Ccc-ceeeecCCEE
Confidence            7777655433 332221  1    2345666653 4444446778888876 443332232 2   222 2356999888


Q ss_pred             EEEcCC--CeEEEeecc
Q psy6859         198 VSVDKA--GILEYWSGY  212 (261)
Q Consensus       198 ~~~~~d--g~i~iwd~~  212 (261)
                      +-...+  ..|..-++.
T Consensus       199 y~t~~~~~~~I~~~~ld  215 (302)
T 3s25_A          199 YYMDVNRDNAIVHVNIN  215 (302)
T ss_dssp             EEEEGGGTTEEEEECSS
T ss_pred             EEEEcCCCcEEEEEECC
Confidence            665433  345555553

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.87  E-value=0.39  Score=36.20  Aligned_cols=110  Identities=10%  Similarity=0.053  Sum_probs=68.6

Q ss_pred             EEEEEeCCCcEEEEEccccceeeeeeccC-cceeEEEEe-e---cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC
Q psy6859          60 LLCTVASDKAMKVFDVINFDMINMIKLDF-TPLTVECIH-Y---LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF  134 (261)
Q Consensus        60 ~l~s~~~dg~v~~wd~~~~~~~~~~~~~~-~~~~~~~~~-~---~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~  134 (261)
                      .++.++.||.|.-+|..+|+.+.+++... .+.  .... +   .+..++.+  .++.||.|..++..++.....+....
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~--~~~~~~~~~~~~~~~vv--~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPL--IEIQEPSRLETYETLII--EPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCS--EECCCSCTTTSSEEEEE--CCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCc--EEecCCccccCCcEEEE--EECCCCEEEEEECCCCcEEeeecccc
Confidence            78888999999999999999998887651 111  1111 0   01122221  22579999999998875444333211


Q ss_pred             C--cceEEEEE----E------eCCCCceEEEEecCCCeEEEEEccCCCccceeec
Q psy6859         135 T--PLTVECIH----Y------LGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       135 ~--~~~~~~~~----~------~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  178 (261)
                      .  ..++.. .    .      +.++   .+++|+.++++...|++ +++.+.++.
T Consensus        88 lv~~SP~~~-~~~pvv~~~~~~~~~g---~Vy~Gs~~g~l~ald~~-tG~~~W~~~  138 (339)
T 2be1_A           88 LVSTSPLHL-KTNIVVNDSGKIVEDE---KVYTGSMRTIMYTINML-NGEIISAFG  138 (339)
T ss_dssp             HHTTCSEEE-ECC----------CCE---EEEECEEEEEEEEEETT-TCCEEEEES
T ss_pred             ceecccccc-CCCceeecccccccCC---EEEEEecCCEEEEEECC-CCcEEEEEe
Confidence            0  001110 0    0      0222   37888999999999999 999999886

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.16  E-value=1.4  Score=33.41  Aligned_cols=236  Identities=8%  Similarity=-0.059  Sum_probs=114.6

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe----eccccceeEEEEeeC---CCEEEEE-e--CCCcEEEE
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF----RSHLGVIHSICTNYN---GTLLCTV-A--SDKAMKVF   73 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~s~-~--~dg~v~~w   73 (261)
                      .-+.|+|.| +.++++--..|.|++++..++....+..+    .........|+++|+   +..|... +  .++.|.-|
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            456899999 77666655589999988655432333222    123456789999985   3344432 2  34455556


Q ss_pred             Eccccc----------ee-eeee-ccCcceeEEEEeecCCceeeeeeec---------CCCCeEEEEEcCCCc-------
Q psy6859          74 DVINFD----------MI-NMIK-LDFTPLTVECIHYLGDAIPTAAVSD---------QDSSRVHIYDCKGND-------  125 (261)
Q Consensus        74 d~~~~~----------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~---------~~d~~i~i~d~~~~~-------  125 (261)
                      ....+.          .+ ..+. ...+....+.+.+++...++..-.+         ...+.|.-.+....-       
T Consensus       113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~  192 (347)
T 3das_A          113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFP  192 (347)
T ss_dssp             EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSST
T ss_pred             EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCC
Confidence            554311          11 1111 1223344566667765444430000         113445444544320       


Q ss_pred             eeeEEeecCCcceEEEEEEeCCCCceEEEEe-cCCCeEEEEEccCCC------------------ccceeeccCcccCeE
Q psy6859         126 MINMIKLDFTPLTVECIHYLGDAIPTAAVSD-QDSSHVHIYDCKGNG------------------TPLHVLDRLHTKPVV  186 (261)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~------------------~~~~~~~~~~~~~v~  186 (261)
                      ....+.. ... ....++|+|++..  .++- +.++.=.|.-+. .+                  .++..+. .+.....
T Consensus       193 ~~~i~a~-G~R-Np~Gla~dp~G~L--~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~~~-~~~~ap~  266 (347)
T 3das_A          193 GSPVYSY-GHR-NVQGLAWDDKQRL--FASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQWS-TDEASPS  266 (347)
T ss_dssp             TCCEEEB-CCS-BCCEEEECTTCCE--EEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEEEC-TTTCCEE
T ss_pred             CCeEEee-CCC-CcceEEECCCCCE--EEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEecC-CCCCCCc
Confidence            0011111 111 3457888887652  2221 222222222222 11                  1223332 1223556


Q ss_pred             EEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         187 LIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       187 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      .++|. ++..+...-..+.|....+....           ...+....+.+....+..|+..|||.++++..
T Consensus       267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~-----------~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          267 GIAYA-EGSVWMAGLRGERLWRIPLKGTA-----------AAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEE-TTEEEEEESTTCSEEEEEEETTE-----------ESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             ceEEE-cCceeeccccCCEEEEEEecCCc-----------eecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            77776 45555555555556555554321           01122233344456899999999998776643

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.07  E-value=0.12  Score=45.99  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeec
Q psy6859          48 VIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKL   86 (261)
Q Consensus        48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~   86 (261)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..+
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL  277 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  277 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence            355666677888999999999999999999998887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.99  E-value=1.8  Score=34.04  Aligned_cols=176  Identities=8%  Similarity=0.044  Sum_probs=110.3

Q ss_pred             CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCC
Q psy6859          22 NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGD  101 (261)
Q Consensus        22 ~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (261)
                      .+.+|.|.|+.+......+.+.     --+.-.+|..+.++.-. ..++.++|+++.+.++.+.....-....|++  .+
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi~-----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis--~~  117 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LN  117 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEECC-----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEE--TT
T ss_pred             CCCeEEEEECCCCCcceecccc-----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecC--CC
Confidence            3447777787764322112222     13445678887777655 6789999999999999988776655555554  34


Q ss_pred             ceeeeeeecCCCCeEEEEEcCCC-ceeeEEeecC--CcceEEEEEEeCCCCceEEEEec-----CCCeEEEEEccCCCcc
Q psy6859         102 AIPTAAVSDQDSSRVHIYDCKGN-DMINMIKLDF--TPLTVECIHYLGDAIPTAAVSDQ-----DSSHVHIYDCKGNGTP  173 (261)
Q Consensus       102 ~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~  173 (261)
                      .+..+     .+..|.-|++... .+.+.+..+.  ....|.....+++.++.+++.-+     -.|.+.+|..+  .+.
T Consensus       118 ~l~lV-----T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~  190 (494)
T 1bpo_A          118 TVALV-----TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKV  190 (494)
T ss_dssp             EEEEE-----CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST--TCC
T ss_pred             eEEEE-----cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc--ccc
Confidence            44444     6889999999753 4566665432  34578888889999986543221     24778899985  345


Q ss_pred             ceeeccCcccCeEEEEEcCCC---CEEEEEcC---CCeEEEeeccc
Q psy6859         174 LHVLDRLHTKPVVLIKFNPIY---QVVVSVDK---AGILEYWSGYK  213 (261)
Q Consensus       174 ~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~iwd~~~  213 (261)
                      -+.++ +|-+.-..+.+.-+.   ++++.+..   .+.++|-++..
T Consensus       191 sQ~ie-Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~  235 (494)
T 1bpo_A          191 SQPIE-GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT  235 (494)
T ss_dssp             EEEEC-CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSC
T ss_pred             cchhe-eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCC
Confidence            56666 777655554443221   13333332   27888888853

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.81  E-value=1.2  Score=31.38  Aligned_cols=179  Identities=6%  Similarity=-0.069  Sum_probs=88.5

Q ss_pred             CCeEEEecCCCeEEEEeccCCc---e-eeeEEeecc--ccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee------
Q psy6859          14 TDFVITASNDGHIKFWKKQEEG---I-EFVKHFRSH--LGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI------   81 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~---~-~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~------   81 (261)
                      +.+|+...+| +++.=......   . .....+ +.  =..+..++|+|++.+.+.  .+|.+.-.+..+.+..      
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            4466677777 65543333221   0 011111 22  246789999999976655  7777666665442111      


Q ss_pred             eeee-ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee-----EEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          82 NMIK-LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN-----MIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                      ..+- ..-.....+.+.+++...++      .||.|.-++..+.....     .......-..+..+.+.|++.   +.+
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~LYav------~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~---Lya  150 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGYLYAV------SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY---LYA  150 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSCEEEE------ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC---EEE
T ss_pred             cEecccccccceEEEECCCCCEEEe------CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce---EEE
Confidence            1110 01111244555555543322      46888888764322111     111111123568999999996   444


Q ss_pred             ecCCCeEEEEEccCCCcc------ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         156 DQDSSHVHIYDCKGNGTP------LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      .. |+.++-.... ....      ...+-...-..-+-+.|.|++.+.++.  ++  ++|..
T Consensus       151 v~-dg~lyr~~~P-~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~  206 (236)
T 1tl2_A          151 VH-GQQFYKALPP-VSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYED  206 (236)
T ss_dssp             EE-TTEEEEECCC-SSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEE
T ss_pred             Ee-CCcEEecCCC-CCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEec
Confidence            44 7775432222 1110      111100222334557799999877666  66  44543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.74  E-value=1.5  Score=32.44  Aligned_cols=161  Identities=9%  Similarity=0.010  Sum_probs=83.7

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe--CCCc--EEEEEccccceeeeeeccCcceeEEEEeec
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA--SDKA--MKVFDVINFDMINMIKLDFTPLTVECIHYL   99 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~--v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~   99 (261)
                      ..|+..+++....+.   +..  .  .+..|++++++|+-..  .++.  |...++. +.....+.....    ..+.+.
T Consensus        88 ~~Iy~i~~dg~~~~~---l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~  155 (302)
T 3s25_A           88 NSLCRIKRNGHGSTV---LDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTS  155 (302)
T ss_dssp             EEEEEEETTSCCCEE---EEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEE
T ss_pred             CeEEEEeCCCCcceE---eec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEE
Confidence            456666666542222   221  1  2236788888888765  3444  4444553 333333332211    234667


Q ss_pred             CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeecc
Q psy6859         100 GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR  179 (261)
Q Consensus       100 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  179 (261)
                      ++.+...   ......|...++..+.....+.   .+.   ...+.|++.+++.........|..-++.  +.....+. 
T Consensus       156 g~~iy~t---~~g~~~Iy~~~l~g~~~~~l~~---~~~---~~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt-  223 (302)
T 3s25_A          156 DRYFYYN---NPKNGQLYRYDTASQSEALFYD---CNC---YKPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLT-  223 (302)
T ss_dssp             TTEEEEE---CTTTCCEEEEETTTTEEEEEEC---SCE---EEEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECS-
T ss_pred             CCEEEEE---eCCCceEEEEECCCCCEEEEeC---CCc---cceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEe-
Confidence            7776654   2346788888888775443332   111   1234577776434333323456666664  44444553 


Q ss_pred             CcccCeEEEEEcCCCCEEEEEc--CCCeEEEeecc
Q psy6859         180 LHTKPVVLIKFNPIYQVVVSVD--KAGILEYWSGY  212 (261)
Q Consensus       180 ~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~  212 (261)
                      .  ..+  ..|+|++++|+-+.  ..+.|..-++.
T Consensus       224 ~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          224 E--ANI--EHYNVYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             C--SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred             C--CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence            2  223  34788888886542  33555555554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.37  E-value=3.2  Score=35.09  Aligned_cols=189  Identities=10%  Similarity=0.100  Sum_probs=100.9

Q ss_pred             CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeee
Q psy6859           4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINM   83 (261)
Q Consensus         4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~   83 (261)
                      ..|.++...+...|..|+.+| +..+|..+.  +...........|.++.. .++ .|..++.+ -+..+|..+++....
T Consensus        63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~--~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~  136 (758)
T 3ott_A           63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRAD--RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF  136 (758)
T ss_dssp             SCEEEEEEETTTEEEEEETTE-EEEEETTTT--EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred             ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCC--EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence            458888776645666677655 678888765  222211112234666654 455 45556655 578888766543321


Q ss_pred             ee----ccCcceeEEEEeec-CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC----CcceEEEEEEeCCCCceEEE
Q psy6859          84 IK----LDFTPLTVECIHYL-GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF----TPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        84 ~~----~~~~~~~~~~~~~~-~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  154 (261)
                      ..    .....  +..+..+ ...+...    +. +-+..+|..+++.. .+....    ....+.++...+++..  +.
T Consensus       137 ~~~~~~l~~~~--i~~i~~d~~g~lWig----t~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~--lW  206 (758)
T 3ott_A          137 DTRRNGLPNNT--IYSIIRTKDNQIYVG----TY-NGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQC--VW  206 (758)
T ss_dssp             CHHHHCCSCSC--EEEEEECTTCCEEEE----ET-TEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTE--EE
T ss_pred             ccCCCCcCCCe--EEEEEEcCCCCEEEE----eC-CCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCE--EE
Confidence            01    11122  2233332 3344443    33 45778887766432 222111    1224778877776543  23


Q ss_pred             EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .|+ ++-+..+|.. +++. ..+.......|.++...++|.+.+. +.+| +.+++..+
T Consensus       207 igt-~~Gl~~~~~~-~~~~-~~~~~l~~~~i~~i~~d~~g~lWig-T~~G-l~~~~~~~  260 (758)
T 3ott_A          207 IGT-EGYLFQYFPS-TGQI-KQTEAFHNNSIKSLALDGNGDLLAG-TDNG-LYVYHNDT  260 (758)
T ss_dssp             EEE-EEEEEEEETT-TTEE-EEEEEEEEEEEEEEEECTTCCEEEE-ETTE-EEEECCTT
T ss_pred             EEE-CCCCeEEcCC-CCeE-EeccCCCCCeEEEEEEcCCCCEEEE-eCCc-eeEEecCC
Confidence            333 3458888876 4432 2222123456888888888875544 3444 78888754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.80  E-value=5.8  Score=36.41  Aligned_cols=201  Identities=14%  Similarity=0.113  Sum_probs=100.2

Q ss_pred             CCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeecc----ccceeEEEEeeCCCEEEEEe-------CCCcEEE
Q psy6859           4 SPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSH----LGVIHSICTNYNGTLLCTVA-------SDKAMKV   72 (261)
Q Consensus         4 ~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~-------~dg~v~~   72 (261)
                      .+|.--.|-..+.|+-.+ +..|.-|++.+ ...+.+.+.-|    ...|..-..+++.++++..+       -.|.+.+
T Consensus       106 e~VvfWkWis~~~l~lVT-~~aVyHW~~~~-~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL  183 (1630)
T 1xi4_A          106 DDVTFWKWISLNTVALVT-DNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL  183 (1630)
T ss_pred             CCceEEEecCCCeeEEEc-CCeEEEeccCC-CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence            345444555544454444 36889999965 22555555444    34577777788888877554       2477888


Q ss_pred             EEccccceeeeeeccCcceeEEEEe--ecCCceeeeeeecCCCCeEEEEEcCCC---ce---eeEEeecCCc----ceEE
Q psy6859          73 FDVINFDMINMIKLDFTPLTVECIH--YLGDAIPTAAVSDQDSSRVHIYDCKGN---DM---INMIKLDFTP----LTVE  140 (261)
Q Consensus        73 wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~---~~~~~~~~~~----~~~~  140 (261)
                      |..+.+. -+.+..+........+.  +....+++.+......+.++|.++...   .+   .+.......|    .-..
T Consensus       184 yS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv  262 (1630)
T 1xi4_A          184 YSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (1630)
T ss_pred             eeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce
Confidence            8876432 11111111100000000  011122222222223468888887542   11   1111111111    2334


Q ss_pred             EEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         141 CIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      ++..++....  +..-+.-|.+++||+. ++.++..-+ -...+|-..+-++...-++.....|.|.--.+
T Consensus       263 ~~~vs~k~g~--iy~itk~G~~~~~d~~-t~~~i~~~r-is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v  329 (1630)
T 1xi4_A          263 AMQISEKHDV--VFLITKYGYIHLYDLE-TGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCV  329 (1630)
T ss_pred             EEEeccccCE--EEEEecCceEEEEecc-cchhhhhcc-ccCCceEEeccCCCCCceEEEcCCceEEEEEE
Confidence            5666666543  3334567999999999 888776554 34444443333332222333335555544443

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=92.74  E-value=0.58  Score=39.03  Aligned_cols=73  Identities=10%  Similarity=0.159  Sum_probs=45.8

Q ss_pred             eeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCccee-EEEEee---cC------CceeeeeeecCCCCeEEE
Q psy6859          49 IHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLT-VECIHY---LG------DAIPTAAVSDQDSSRVHI  118 (261)
Q Consensus        49 v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~-~~~~~~---~~------~~~~~~~~s~~~d~~i~i  118 (261)
                      |.++.  .+..++++-+.|.++|+|++.+++++........+.. ..++.+   .+      +.++ +.+++..+|..++
T Consensus       224 Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~l-v~y~P~~~G~Fk~  300 (729)
T 3f7f_A          224 ISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTL-VTLLPLENGLFQM  300 (729)
T ss_dssp             EEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEE-EEEETTTTCEEEE
T ss_pred             EEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEE-EEEecCCCCeEEE
Confidence            44443  3567999999999999999999998887776322100 001211   11      1222 2366677889999


Q ss_pred             EEcCCC
Q psy6859         119 YDCKGN  124 (261)
Q Consensus       119 ~d~~~~  124 (261)
                      |.+...
T Consensus       301 ~~l~~~  306 (729)
T 3f7f_A          301 GTLLVD  306 (729)
T ss_dssp             EEEEC-
T ss_pred             EEEEEc
Confidence            988643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.48  E-value=3.2  Score=32.75  Aligned_cols=104  Identities=7%  Similarity=-0.016  Sum_probs=53.6

Q ss_pred             eEEEEeecCCceeeeeeecCCC-CeEEEEEcCCCceeeEEeecC------CcceEEEEEEeCC---CCceEEEEecC---
Q psy6859          92 TVECIHYLGDAIPTAAVSDQDS-SRVHIYDCKGNDMINMIKLDF------TPLTVECIHYLGD---AIPTAAVSDQD---  158 (261)
Q Consensus        92 ~~~~~~~~~~~~~~~~~s~~~d-~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~---  158 (261)
                      ..+.+.++++.+++     ... +.|.+++..++..........      .......++++|+   ... ++++-+.   
T Consensus        30 ~~~a~~pdG~l~V~-----e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~-lYv~~s~~~~  103 (454)
T 1cru_A           30 HALLWGPDNQIWLT-----ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY-IYISGTFKNP  103 (454)
T ss_dssp             EEEEECTTSCEEEE-----ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE-EEEEEEEECT
T ss_pred             eEEEEcCCCcEEEE-----EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE-EEEEEecccc
Confidence            45566677764443     344 468888765554322222211      2335678999996   333 2333321   


Q ss_pred             ---------CCeEEEEEccCCC------ccc-eeeccCcccCeEEEEEcCCCCEEEEEc
Q psy6859         159 ---------SSHVHIYDCKGNG------TPL-HVLDRLHTKPVVLIKFNPIYQVVVSVD  201 (261)
Q Consensus       159 ---------d~~i~i~d~~~~~------~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~  201 (261)
                               ...|.-|+.....      +.+ ..+..........|+|.|||.+.++.+
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                     2356666654111      111 122211223478899999998665544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.30  E-value=5.9  Score=33.28  Aligned_cols=155  Identities=8%  Similarity=0.024  Sum_probs=72.5

Q ss_pred             eCCCEEEEEeCC----CcEEEEEccccceeeee-e-----ccCcceeEEEEeec-CCceeee-eeecC--CCCeEEEEEc
Q psy6859          56 YNGTLLCTVASD----KAMKVFDVINFDMINMI-K-----LDFTPLTVECIHYL-GDAIPTA-AVSDQ--DSSRVHIYDC  121 (261)
Q Consensus        56 ~~~~~l~s~~~d----g~v~~wd~~~~~~~~~~-~-----~~~~~~~~~~~~~~-~~~~~~~-~~s~~--~d~~i~i~d~  121 (261)
                      .++..++.|+.+    ..+.+||..+++....- .     .+............ ++.++.. ...+.  .-..+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            566777777753    46888998877644332 1     11111112222221 3333332 11110  1246889998


Q ss_pred             CCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC--eEEEEEccCCCc--ccee---eccCcccCeEEEEEcCC-
Q psy6859         122 KGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS--HVHIYDCKGNGT--PLHV---LDRLHTKPVVLIKFNPI-  193 (261)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~--~~~~---~~~~~~~~v~~~~~~~~-  193 (261)
                      .+.+-...-.... +..-.+.....++.  +++.|+.++  .+.+||.. +..  .+..   +. ........+.+..+ 
T Consensus       476 ~t~~W~~~~~~p~-~R~~h~~~~~~~~~--iyv~GG~~~~~~v~~yd~~-t~~W~~~~~~g~~p-~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          476 KTREWSMIKSLSH-TRFRHSACSLPDGN--VLILGGVTEGPAMLLYNVT-EEIFKDVTPKDEFF-QNSLVSAGLEFDPVS  550 (695)
T ss_dssp             TTTEEEECCCCSB-CCBSCEEEECTTSC--EEEECCBCSSCSEEEEETT-TTEEEECCCSSGGG-GSCCBSCEEEEETTT
T ss_pred             CCCcEEECCCCCC-CcccceEEEEcCCE--EEEECCCCCCCCEEEEECC-CCceEEccCCCCCC-CcccceeEEEEeCCC
Confidence            8764332211111 11112233322443  255554433  68899987 432  1111   11 11112233555555 


Q ss_pred             CCEEEEEcC--C-----CeEEEeeccccc
Q psy6859         194 YQVVVSVDK--A-----GILEYWSGYKQE  215 (261)
Q Consensus       194 ~~~l~~~~~--d-----g~i~iwd~~~~~  215 (261)
                      +++++.|+.  +     ..+.+||+.++.
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            666677764  2     358888886643

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.70  E-value=2.7  Score=34.21  Aligned_cols=86  Identities=13%  Similarity=0.156  Sum_probs=55.8

Q ss_pred             cceeEEEEeeCCCEEEEEeC-CCcEEEEEccccce-------------eeeeeccCcceeEEEEeecCCceeeeeeecCC
Q psy6859          47 GVIHSICTNYNGTLLCTVAS-DKAMKVFDVINFDM-------------INMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  112 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  112 (261)
                      .....+.++|||++++.++. +.++.++|+.....             ..+.+....| ....+.++|....++    --
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP-lHt~Fd~~G~aYTtl----fi  397 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP-LHTTFDGRGNAYTTL----FI  397 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE-EEEEECSSSEEEEEE----TT
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc-cEEEECCCCceEeee----ee
Confidence            44578899999999988774 78999999874211             2233333333 345566666333333    57


Q ss_pred             CCeEEEEEcCCC----------ceeeEEeecCCcc
Q psy6859         113 SSRVHIYDCKGN----------DMINMIKLDFTPL  137 (261)
Q Consensus       113 d~~i~i~d~~~~----------~~~~~~~~~~~~~  137 (261)
                      |..|.-|++...          ..+..+..+.++.
T Consensus       398 dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG  432 (638)
T 3sbq_A          398 DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG  432 (638)
T ss_dssp             TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE
T ss_pred             cceEEEEeccHHHHHhcCccCCeeeeccccccCCc
Confidence            999999998743          4566666665554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=89.25  E-value=5.8  Score=30.02  Aligned_cols=28  Identities=0%  Similarity=-0.057  Sum_probs=21.7

Q ss_pred             ceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859          48 VIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus        48 ~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      ....|+|.|+++.|+.+...|.|++++.
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQA   46 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence            4589999999983444567899999985

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.34  E-value=8.2  Score=30.59  Aligned_cols=54  Identities=15%  Similarity=0.166  Sum_probs=33.0

Q ss_pred             eEEEEEEeCCCC-ceEEEEecCCCeEEEEEccCC--Cccceeec----c----CcccCeEEEEEcCC
Q psy6859         138 TVECIHYLGDAI-PTAAVSDQDSSHVHIYDCKGN--GTPLHVLD----R----LHTKPVVLIKFNPI  193 (261)
Q Consensus       138 ~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~----~----~~~~~v~~~~~~~~  193 (261)
                      ....|+|.|++. . ++++ ...|.|++++....  ..++..+.    .    ..+.....|+|+|+
T Consensus        15 ~P~~~a~~pdG~~r-l~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           15 QPVGALHSGDGSQR-LFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SEEEEECCSSSSCC-EEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CceEEEECCCCCeE-EEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            347899999985 3 2444 46899999975411  11222221    0    11456889999997

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=83.49  E-value=5.1  Score=32.85  Aligned_cols=58  Identities=14%  Similarity=0.024  Sum_probs=36.1

Q ss_pred             eEEEEEcCCCCEEEEEcCC------------CeEEEeecccccccCCeeeeeecccccceeecCC-CccceeeeeECCCC
Q psy6859         185 VVLIKFNPIYQVVVSVDKA------------GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-NKTYPSGLSFSPDG  251 (261)
Q Consensus       185 v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~  251 (261)
                      .--|+|+|.|++++.-..+            ..+.+.+.               .+++..+-+.+ ....++.++|+||+
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~---------------~~g~~~rf~~~P~gaE~TG~~fspDg  542 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADP---------------ATGEIRRFMVGPIGCEVTGISFSPDQ  542 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECT---------------TTCCEEEEEECCTTCEEEEEEECTTS
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeC---------------CCCeEEEEEeCCCCccCcCeeECCCC
Confidence            4568999999966654432            12233332               23343333333 35689999999999


Q ss_pred             ceEEEe
Q psy6859         252 NKFVTI  257 (261)
Q Consensus       252 ~~l~s~  257 (261)
                      +.|...
T Consensus       543 ~tlfvn  548 (592)
T 3zwu_A          543 KTLFVG  548 (592)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            988765

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=82.56  E-value=16  Score=28.80  Aligned_cols=61  Identities=7%  Similarity=0.025  Sum_probs=36.5

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeec------cccceeEEEEeeC---CCEEEEEe
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRS------HLGVIHSICTNYN---GTLLCTVA   65 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~s~~   65 (261)
                      .-+.|+|.| ++++++-...+.|++++..++....+..+..      .......|+|+|+   +..|..+.
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            456899999 7766654444578888765443233333321      2345679999995   44554443

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=81.76  E-value=7.6  Score=32.63  Aligned_cols=34  Identities=12%  Similarity=0.267  Sum_probs=27.4

Q ss_pred             EEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee
Q psy6859          95 CIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL  132 (261)
Q Consensus        95 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~  132 (261)
                      ++..+...++++    +.|.++++|++++++++.....
T Consensus       226 ~~~~~~~fLftL----~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          226 CKLFHERYLIVL----TQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEETTTEEEEE----ETTCEEEEEETTTTEEEEEEET
T ss_pred             EeccCCcEEEEE----EcCCeEEEEEcCCCceEEeecc
Confidence            334556677777    8999999999999998888766

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=81.24  E-value=11  Score=30.89  Aligned_cols=61  Identities=13%  Similarity=0.019  Sum_probs=37.2

Q ss_pred             cCeEEEEEcCCCCEEEEEcCC------------CeEEEeecccccccCCeeeeeecccccceeecCC-CccceeeeeECC
Q psy6859         183 KPVVLIKFNPIYQVVVSVDKA------------GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK-NKTYPSGLSFSP  249 (261)
Q Consensus       183 ~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~  249 (261)
                      .....|.|+++|.+.+.....            ..+..++.               .+++....+.+ ....++.++|+|
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp---------------~tGel~~fl~~P~~aEpnGiafSP  540 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADP---------------ATGEIRRFMVGPIGCEVTGISFSP  540 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECT---------------TTCCEEEEEECCTTCEEEEEEECT
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeC---------------CCCeEEEEEeCCCCccccCCEECC
Confidence            345778999999866633211            13333433               23443333333 245789999999


Q ss_pred             CCceEEEee
Q psy6859         250 DGNKFVTIS  258 (261)
Q Consensus       250 ~~~~l~s~~  258 (261)
                      |++.|.++-
T Consensus       541 D~ktLfV~v  549 (592)
T 4a9v_A          541 DQKTLFVGI  549 (592)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEE
Confidence            999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.6 bits (119), Expect = 6e-08
 Identities = 24/262 (9%), Positives = 64/262 (24%), Gaps = 4/262 (1%)

Query: 2   HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
              PI+     K    +    N+  +  ++K       V   + H G +  +    +   
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
           + T  +D+   V+ +        + +        C+ +  +    A  S      +  ++
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
            + +  +          TV  + +  +++  AA S        I+               
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD--FKCRIFSAYIKEVEERPAPTP 183

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
               +   +                                V               ++T
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243

Query: 241 YP-SGLSFSPDGNKFVTISMDR 261
            P   ++F  + +         
Sbjct: 244 LPLLAVTFITESSLVAAGHDCF 265

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 31/290 (10%), Positives = 64/290 (22%), Gaps = 39/290 (13%)

Query: 2   HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           H + I  +        +++AS DG +  W         V         + +     +G  
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNY 111

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
           +     D    ++++   +    +  +    T                S  D++      
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
             G             +++              VS    +   ++D +  G         
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPD-----TRLFVSGACDASAKLWDVR-EGMCRQTF-TG 224

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDT---------- 230
           H   +  I F P      +         +     +              T          
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 231 -------------DLFEFAKNKTYP------SGLSFSPDGNKFVTISMDR 261
                        D  +  +           S L  + DG    T S D 
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 2   HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           H S I  +      +   T S+D   + +  + +         + +  I S+  + +G L
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
           L     D    V+D +  D   ++      ++   +   G A+ T +      S + I++
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS----WDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 8/162 (4%)

Query: 49  IHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAV 108
           + S+    +  L  + A D + K++DV             + +   C    G+A   A  
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF--ATG 244

Query: 109 SDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCK 168
           SD  + R+         M          +T       G  +    ++  D  + +++D  
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL----LAGYDDFNCNVWDAL 300

Query: 169 GNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS 210
                  VL   H   V  +        V +      L+ W+
Sbjct: 301 -KADRAGVL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 12/74 (16%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 2   HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           H + +  V+      F+++ ++D  ++ W  + +    +K   +H   + S+  +     
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--RCMKTLNAHEHFVTSLDFHKTAPY 303

Query: 61  LCTVASDKAMKVFD 74
           + T + D+ +KV++
Sbjct: 304 VVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 6e-06
 Identities = 46/266 (17%), Positives = 92/266 (34%), Gaps = 18/266 (6%)

Query: 2   HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
           HRSP+T V+       +++AS D  IK W  +    +F +  + H   +  I  +++G L
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKL 73

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
           L + ++D  +K++D   F+ I  +      ++   I   GD I    VS      + +++
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI----VSASRDKTIKMWE 129

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
            +    +         + +   +  G  I +       S+   +              R 
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASC------SNDQTVRVWVVATKECKAELRE 183

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP-----KCVHFESKLDTDLFEF 235
           H   V  I + P        +  G     SG    F            ++      L   
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 243

Query: 236 AKNKTYPSGLSFSPDGNKFVTISMDR 261
             +  +  G+ F   G   ++ + D+
Sbjct: 244 VGHDNWVRGVLFHSGGKFILSCADDK 269

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 40/261 (15%), Positives = 86/261 (32%), Gaps = 49/261 (18%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
              +  +  ++   D +++AS D  IK W+ Q      VK F  H   +  +  N +GTL
Sbjct: 100 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYCVKTFTGHREWVRMVRPNQDGTL 157

Query: 61  LCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYD 120
           + + ++D+ ++V+ V   +    ++                          +   V    
Sbjct: 158 IASCSNDQTVRVWVVATKECKAELR--------------------------EHRHVVECI 191

Query: 121 CKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRL 180
               +       + T    +     G  + + +        + ++D    G  L  L   
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGS----RDKTIKMWDVS-TGMCLMTLVG- 245

Query: 181 HTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT 240
           H   V  + F+   + ++S      L  W      +K  +C+               ++ 
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWD-----YKNKRCMK----------TLNAHEH 290

Query: 241 YPSGLSFSPDGNKFVTISMDR 261
           + + L F       VT S+D+
Sbjct: 291 FVTSLDFHKTAPYVVTGSVDQ 311

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 21/270 (7%), Positives = 58/270 (21%), Gaps = 31/270 (11%)

Query: 2   HRSPITHVVVTKTDFVITASNDGHIKFWK----KQEEGIEFVKHFRSHLGVIHSICT--- 54
           H + I  V      F ++ S DG++K W       E   +       H   +H +     
Sbjct: 13  HDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 55  ----NYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD 110
                +   L+ T +    +  + +   D    +  +   L    +            S+
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131

Query: 111 QDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN 170
                  +          + K                       +D+ +S    +     
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFH-------------------PFADESNSLTLNWSPTLE 172

Query: 171 GTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDT 230
                      ++    +  +    +    +   +        +     +  H       
Sbjct: 173 LQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232

Query: 231 DLFEFAKNKTYPSGLSFSPDGNKFVTISMD 260
            +     +             +       +
Sbjct: 233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYE 262

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
                  +    + D V T S D +I  +  +    + +K   +H   ++++      TL
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDGVNNLLWETPSTL 272

Query: 61  LCTVASDKAMKVFDVI 76
           + +  +D  +K ++V+
Sbjct: 273 V-SSGADACIKRWNVV 287

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 15/126 (11%), Positives = 41/126 (32%), Gaps = 5/126 (3%)

Query: 2   HRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL 61
           H + +   +  + ++VIT ++D  I+ +    +  +F+     H G + ++   + G L+
Sbjct: 11  HMTSVITCLQFEDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHGGILV 68

Query: 62  CTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDC 121
                                    + T   ++ + Y           D     +H++  
Sbjct: 69  SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN---TLHVWKL 125

Query: 122 KGNDMI 127
                +
Sbjct: 126 PKESSV 131

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 28/264 (10%), Positives = 66/264 (25%), Gaps = 4/264 (1%)

Query: 2   HRSPITHVVVTKT-DFVITASNDGHIKFWKKQEEGIEF-VKHFRSHLGVIHSICTNYNGT 59
            +  I+ + +  +   ++  S DG +  +K   +     +     +   +       N  
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 60  LLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIY 119
           L   V + +   +   +          +       C           A S      V   
Sbjct: 70  LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129

Query: 120 DCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPL--HVL 177
              G+ +I +  L+     V+   +  D   +  +   ++S V  +              
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE 189

Query: 178 DRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK 237
             L  +   +       +        G +       Q   +     F  +      +   
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN 249

Query: 238 NKTYPSGLSFSPDGNKFVTISMDR 261
                + + FSP      T   D 
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDG 273

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 24/263 (9%), Positives = 51/263 (19%), Gaps = 28/263 (10%)

Query: 2   HRSPITHVVVTKTDFVITASNDGHIKFW---KKQEEGIEFVKHFRSHLGVIHSICTNYNG 58
           H   +  V ++     +     G +K W       +         +    I S     +G
Sbjct: 50  HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 59  TLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHI 118
             L        + ++D+         +                    A   D        
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAE---------LTSSAPACYALAISPDSKVCFSCC 160

Query: 119 YDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD 178
            D          +                 I             +            +  
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220

Query: 179 RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN 238
              T  +  + + P                   +         V        D ++   +
Sbjct: 221 HDFTSQIFSLGYCP----------------TGEWLAVGMESSNVEVLHVNKPDKYQLHLH 264

Query: 239 KTYPSGLSFSPDGNKFVTISMDR 261
           ++    L F+  G  FV+   D 
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDN 287

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 10/75 (13%), Positives = 21/75 (28%)

Query: 1   MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTL 60
                           + T S D  +  W   +     +    +H     +     N T 
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282

Query: 61  LCTVASDKAMKVFDV 75
           + +   D  +K ++V
Sbjct: 283 IVSAGQDSNIKFWNV 297

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 25/251 (9%), Positives = 53/251 (21%), Gaps = 16/251 (6%)

Query: 17  VITASNDGHIKFW-----KKQEEGIEFVKHFRSHLGVIHSIC-TNYNGTLLCTVASDKAM 70
                   +++ +         +         S    +H I     +  LL  +    A 
Sbjct: 89  SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148

Query: 71  KVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI 130
               V           D    +  C H    A  T  +    +S              ++
Sbjct: 149 AGLSV------PGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202

Query: 131 KLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKF 190
               T              P   V    +S +   D    G  +      +        F
Sbjct: 203 GAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNF 261

Query: 191 NPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKT---YPSGLSF 247
                 +V+  K          +            S +   + + +   +       +  
Sbjct: 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIA 321

Query: 248 SPDGNKFVTIS 258
           + DG      +
Sbjct: 322 AQDGASDNYAN 332

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.8
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.64
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.54
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.51
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.51
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.37
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.37
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.34
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.33
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.32
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.31
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.3
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.15
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.02
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.0
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.98
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.97
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.96
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.91
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.82
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.64
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.45
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.28
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.2
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.97
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.7
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.13
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.84
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.7
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.55
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.36
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.14
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.03
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.03
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.0
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.81
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.73
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.6
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.58
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.5
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.33
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.96
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.89
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.51
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.42
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.39
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.99
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.87
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	91.79
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.48
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.1
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.07
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.76
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.45
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	81.01

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.8e-42  Score=259.58  Aligned_cols=235  Identities=11%  Similarity=0.119  Sum_probs=193.4

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||+++|++|+|+| +++|++|+.||+|+|||+.++  +.+..+..|..+|.+++|+|+++++++++.|+.+++|+.....
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~  130 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT--EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeeecccc--eeEEEEecccccEEeeEeeccceeeeeecccceeecccccccc
Confidence            8999999999999 899999999999999999987  7888999999999999999999999999999999999976432


Q ss_pred             e----eeeeeccC-----------------------------------------cceeEEEEeecCCceeeeeeecCCCC
Q psy6859          80 M----INMIKLDF-----------------------------------------TPLTVECIHYLGDAIPTAAVSDQDSS  114 (261)
Q Consensus        80 ~----~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~s~~~d~  114 (261)
                      .    ...+..+.                                         .........+....+    ++++.|+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~  206 (340)
T d1tbga_         131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF----VSGACDA  206 (340)
T ss_dssp             SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE----EEEETTT
T ss_pred             cccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee----EEeecCc
Confidence            1    11111111                                         011111122222222    3347899


Q ss_pred             eEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCC
Q psy6859         115 RVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPI  193 (261)
Q Consensus       115 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~  193 (261)
                      .|++||+++++++..+..  +...+.+++|+|++..  +++++.|+.|++||++ ....+..+. ..+...|.+++|+|+
T Consensus       207 ~v~i~d~~~~~~~~~~~~--h~~~i~~v~~~p~~~~--l~s~s~d~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
T d1tbga_         207 SAKLWDVREGMCRQTFTG--HESDINAICFFPNGNA--FATGSDDATCRLFDLR-ADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             EEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSE--EEEEETTSCEEEEETT-TTEEEEEECCTTCCSCEEEEEECSS
T ss_pred             eEEEEECCCCcEEEEEeC--CCCCeEEEEECCCCCE--EEEEeCCCeEEEEeec-ccccccccccccccCceEEEEECCC
Confidence            999999999998888765  4557899999999975  8889999999999998 776665553 256778999999999


Q ss_pred             CCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         194 YQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       194 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +++|++|+.||.|++||+.               +++++..+.+|..+|++++|+|++++|++||.||
T Consensus       282 ~~~l~~g~~dg~i~iwd~~---------------~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg  334 (340)
T d1tbga_         282 GRLLLAGYDDFNCNVWDAL---------------KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             SCEEEEEETTSCEEEEETT---------------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             CCEEEEEECCCEEEEEECC---------------CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCC
Confidence            9999999999999999984               4778889999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-42  Score=258.05  Aligned_cols=236  Identities=19%  Similarity=0.290  Sum_probs=201.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee-----------------------
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY-----------------------   56 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------------   56 (261)
                      ||+++|++|+|+| +++|+||+.||+|+|||+.++  +.+.++.+|...|.+++|+|                       
T Consensus        15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE   92 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--CEEEEEeCCCCcEEEEeeecccccccccccccccccccccccc
Confidence            8999999999999 899999999999999999876  55566666655555555544                       


Q ss_pred             -------------------CCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEE
Q psy6859          57 -------------------NGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVH  117 (261)
Q Consensus        57 -------------------~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~  117 (261)
                                         +++.+++++.|+.+++||+.+++....+..+......+.+.+++..++++    +.|+.|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~d~~v~  168 (317)
T d1vyhc1          93 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC----SNDQTVR  168 (317)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE----ETTSCEE
T ss_pred             cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEE----eCCCeEE
Confidence                               45578888899999999999998888888777778888888888877666    8999999


Q ss_pred             EEEcCCCceeeEEeecCCcceEEEEEEeCCCCc------------------eEEEEecCCCeEEEEEccCCCccceeecc
Q psy6859         118 IYDCKGNDMINMIKLDFTPLTVECIHYLGDAIP------------------TAAVSDQDSSHVHIYDCKGNGTPLHVLDR  179 (261)
Q Consensus       118 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  179 (261)
                      +|++.+++.+..+..  +...+.++.++|+...                  .++++++.|+.|++||++ +++++..+. 
T Consensus       169 ~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~-  244 (317)
T d1vyhc1         169 VWVVATKECKAELRE--HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLV-  244 (317)
T ss_dssp             EEETTTCCEEEEECC--CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT-TTEEEEEEE-
T ss_pred             EEeeccceeeEEEec--CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC-CCcEEEEEe-
Confidence            999999988877765  3446778888776532                  247788999999999999 899999998 


Q ss_pred             CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeec
Q psy6859         180 LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       180 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      +|...|.+++|+|++++|++++.||.|++||++               +++++..+.+|...|++++|+|++++|++|+.
T Consensus       245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~---------------~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~  309 (317)
T d1vyhc1         245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK---------------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV  309 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCT---------------TSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEECC---------------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999999999999994               46788899999999999999999999999999


Q ss_pred             CC
Q psy6859         260 DR  261 (261)
Q Consensus       260 Dg  261 (261)
                      ||
T Consensus       310 Dg  311 (317)
T d1vyhc1         310 DQ  311 (317)
T ss_dssp             TS
T ss_pred             CC
Confidence            96

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.8e-41  Score=250.92  Aligned_cols=238  Identities=13%  Similarity=0.116  Sum_probs=196.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC--CCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS--DKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~v~~wd~~~   77 (261)
                      ||++.|++++|+| +++|++|+.||+|+||++.+........+..|.++|.+++|+|++++|++++.  +..+++|++.+
T Consensus        56 ~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~  135 (311)
T d1nr0a1          56 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT  135 (311)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred             CCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccc
Confidence            6999999999999 99999999999999999988754556678899999999999999999999885  45699999999


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ++....+..+...+..+.++++++.+++   +|+.|+.|++||+++++....+..  +...+.++.++|++..  +++++
T Consensus       136 ~~~~~~l~~h~~~v~~v~~~~~~~~~l~---sgs~d~~i~i~d~~~~~~~~~~~~--~~~~i~~v~~~p~~~~--l~~~~  208 (311)
T d1nr0a1         136 GTSNGNLTGQARAMNSVDFKPSRPFRII---SGSDDNTVAIFEGPPFKFKSTFGE--HTKFVHSVRYNPDGSL--FASTG  208 (311)
T ss_dssp             CCBCBCCCCCSSCEEEEEECSSSSCEEE---EEETTSCEEEEETTTBEEEEEECC--CSSCEEEEEECTTSSE--EEEEE
T ss_pred             ccccccccccccccccccccccceeeec---cccccccccccccccccccccccc--ccccccccccCccccc--ccccc
Confidence            9988888888788888888888775332   348999999999999887777665  3457899999999975  88888


Q ss_pred             CCCeEEEEEccCCCccceeec------cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccc
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLD------RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTD  231 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  231 (261)
                      .|+.|++||++ ++..+..++      .+|...|++++|+|++++|++|+.||.|+|||+++               +++
T Consensus       209 ~d~~v~~~d~~-~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t---------------~~~  272 (311)
T d1nr0a1         209 GDGTIVLYNGV-DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT---------------LKV  272 (311)
T ss_dssp             TTSCEEEEETT-TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---------------TEE
T ss_pred             ccccccccccc-cccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC---------------CcE
Confidence            99999999998 766655553      25788999999999999999999999999999954               566


Q ss_pred             eeecCCCcc-ceeeeeECCCCceEEEeecCC
Q psy6859         232 LFEFAKNKT-YPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       232 ~~~~~~~~~-~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++++..|.. ....+.+.+++++|++++.||
T Consensus       273 ~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG  303 (311)
T d1nr0a1         273 EKTIPVGTRIEDQQLGIIWTKQALVSISANG  303 (311)
T ss_dssp             EEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred             EEEEECCCCccceEEEEEecCCEEEEEECCC
Confidence            777665432 222334444566899999887

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=251.82  Aligned_cols=233  Identities=15%  Similarity=0.149  Sum_probs=203.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|++.|++++|+| +++|++|+.||.|++||+.....+....+..|...+..++|+|++.++++++.|+.+++|++.+++
T Consensus        95 ~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~  174 (337)
T d1gxra_          95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5889999999999 899999999999999999876556777888999999999999999999999999999999999998


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS  159 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (261)
                      .......+..++..+.+++++..++.+    +.|+.+++||+++++.+..+.   ....+.+++|+|++..  +++++.|
T Consensus       175 ~~~~~~~~~~~v~~l~~s~~~~~~~~~----~~d~~v~i~d~~~~~~~~~~~---~~~~i~~l~~~~~~~~--l~~~~~d  245 (337)
T d1gxra_         175 LVRQFQGHTDGASCIDISNDGTKLWTG----GLDNTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEW--LAVGMES  245 (337)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSE--EEEEETT
T ss_pred             ccccccccccccccccccccccccccc----cccccccccccccceeecccc---cccceEEEEEcccccc--cceeccc
Confidence            888877777788888888888877666    889999999999998877765   3457899999999975  7888999


Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      +.+++||++ ..+.....  .|...|++++|+|++++|++++.||.|++||+.+               ++.+..+. |.
T Consensus       246 ~~i~i~d~~-~~~~~~~~--~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~---------------~~~~~~~~-~~  306 (337)
T d1gxra_         246 SNVEVLHVN-KPDKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY---------------GASIFQSK-ES  306 (337)
T ss_dssp             SCEEEEETT-SSCEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---------------CCEEEEEE-CS
T ss_pred             ccccccccc-cccccccc--ccccccceEEECCCCCEEEEEeCCCeEEEEECCC---------------CCEEEEcc-CC
Confidence            999999998 66665544  7999999999999999999999999999999854               45555543 78


Q ss_pred             cceeeeeECCCCceEEEeecCC
Q psy6859         240 TYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       240 ~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ..|.+++|+|++++|++|+.||
T Consensus       307 ~~v~~~~~s~d~~~l~t~s~D~  328 (337)
T d1gxra_         307 SSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             SCEEEEEECTTSCEEEEEETTS
T ss_pred             CCEEEEEEeCCCCEEEEEeCCC
Confidence            8999999999999999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.4e-41  Score=257.17  Aligned_cols=235  Identities=10%  Similarity=0.010  Sum_probs=197.1

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~   81 (261)
                      .++|+|++|+| +++||+|+.|+.|+||+.+++....+..+++|.++|++++|+|++++|++++.|++|++||+.+++..
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            57999999999 89999999999999999988766678889999999999999999999999999999999999877655


Q ss_pred             eeee--ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEE--eecCCcceEEEEEEeCCCCceEEEEec
Q psy6859          82 NMIK--LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMI--KLDFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        82 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      ..+.  .+...+..+.+.++++.++++    +.|+.+++|++.........  ....+...+.+++|+|++..  +++|+
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~----s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~--l~s~s  160 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVG----SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL--LAAGS  160 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEE----ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE--EEEEE
T ss_pred             cccccccccccccccccccccccceee----cccCcceeeeeecccccccccccccccccccccccccccccc--eeccc
Confidence            4443  345567888888988877766    89999999998876543332  23334568999999999975  88999


Q ss_pred             CCCeEEEEEccCCC------------------ccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC
Q psy6859         158 DSSHVHIYDCKGNG------------------TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP  219 (261)
Q Consensus       158 ~d~~i~i~d~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  219 (261)
                      .|+.+++||.. ..                  ..+.... .|...|.+++|+|++++|++++.|+.|++||+.+      
T Consensus       161 ~D~~v~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~------  232 (371)
T d1k8kc_         161 CDFKCRIFSAY-IKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK------  232 (371)
T ss_dssp             TTSCEEEEECC-CTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG------
T ss_pred             cCcEEEEEeec-cCccccccccccccccccceeeeeecc-CccCcEEEEEeecccccccccccCCcceEEeeec------
Confidence            99999999986 32                  2233444 7888999999999999999999999999999953      


Q ss_pred             eeeeeecccccceeecCCCccceeeeeECCCCceEEEeecC
Q psy6859         220 KCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                               ++.+..+..|..+|.+++|+|++++|++|+++
T Consensus       233 ---------~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         233 ---------KMAVATLASETLPLLAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             ---------TTEEEEEECSSCCEEEEEEEETTEEEEEETTS
T ss_pred             ---------ccceeeeecccccceeeeecCCCCEEEEEcCC
Confidence                     67788888999999999999999998877643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-39  Score=246.51  Aligned_cols=233  Identities=14%  Similarity=0.161  Sum_probs=196.0

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCce---eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGI---EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVI   76 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~   76 (261)
                      +|.+.|++++|+| +++|++|+ ||.|+|||+.....   .......+|.+.|.+++|+|++++|++++.||.|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            5999999999999 99999987 89999999976421   1223345789999999999999999999999999999987


Q ss_pred             cc--ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          77 NF--DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        77 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      ..  +....+..+........+++++..++++    +.++.|++||+++++.......  +...+.+++|++++..  ++
T Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~----~~d~~i~~~~~~~~~~~~~~~~--~~~~v~~l~~s~~~~~--~~  199 (337)
T d1gxra_         128 APTPRIKAELTSSAPACYALAISPDSKVCFSC----CSDGNIAVWDLHNQTLVRQFQG--HTDGASCIDISNDGTK--LW  199 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSE--EE
T ss_pred             cccccccccccccccccccccccccccccccc----cccccccccccccccccccccc--cccccccccccccccc--cc
Confidence            54  3455555566667777888887776665    8999999999999887766654  4457899999999875  78


Q ss_pred             EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                      +++.|+.+++||++ +++.+..+  .+...|.+++|+|++++|++++.|+.+++||+++               .+ ...
T Consensus       200 ~~~~d~~v~i~d~~-~~~~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~---------------~~-~~~  260 (337)
T d1gxra_         200 TGGLDNTVRSWDLR-EGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK---------------PD-KYQ  260 (337)
T ss_dssp             EEETTSEEEEEETT-TTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------------SC-EEE
T ss_pred             cccccccccccccc-cceeeccc--ccccceEEEEEcccccccceeccccccccccccc---------------cc-ccc
Confidence            88899999999999 88888888  5889999999999999999999999999999854               22 234


Q ss_pred             cCCCccceeeeeECCCCceEEEeecCC
Q psy6859         235 FAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       235 ~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ...|...|++++|+|++++|++++.||
T Consensus       261 ~~~~~~~i~~v~~s~~g~~l~s~s~Dg  287 (337)
T d1gxra_         261 LHLHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccceEEECCCCCEEEEEeCCC
Confidence            567899999999999999999999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6e-39  Score=240.59  Aligned_cols=242  Identities=15%  Similarity=0.137  Sum_probs=198.0

Q ss_pred             CCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           2 HRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      +.+.+..++++| ++.|+.+. ++.|.+|++++.  .....+.+|...|++++|+|++++|++|+.||+|++||+.+++.
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~--~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~   92 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH   92 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS--SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCC--ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc
Confidence            345566789999 88888875 567999999876  67777899999999999999999999999999999999988764


Q ss_pred             e--eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          81 I--NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      .  ..+..+..++..+.++++++.++++  +.+.+..+++|++++++....+..  +...+.+++|+|++.+ ++++|+.
T Consensus        93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~--~~~~~~~~~v~~~~~~~~~~~l~~--h~~~v~~v~~~~~~~~-~l~sgs~  167 (311)
T d1nr0a1          93 ILKTTIPVFSGPVKDISWDSESKRIAAV--GEGRERFGHVFLFDTGTSNGNLTG--QARAMNSVDFKPSRPF-RIISGSD  167 (311)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSCEEEEE--ECCSSCSEEEEETTTCCBCBCCCC--CSSCEEEEEECSSSSC-EEEEEET
T ss_pred             ccccccccccCccccccccccccccccc--cccccccccccccccccccccccc--ccccccccccccccee-eeccccc
Confidence            4  3455566778888898888877665  223567799999999888777665  4457899999999875 4778899


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN  238 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (261)
                      |+.|++||++ +++....+. .|..+|+++.|+|++++|++++.|+.|++||+.++...    ..+    ........+|
T Consensus       168 d~~i~i~d~~-~~~~~~~~~-~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~----~~~----~~~~~~~~~h  237 (311)
T d1nr0a1         168 DNTVAIFEGP-PFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT----GVF----EDDSLKNVAH  237 (311)
T ss_dssp             TSCEEEEETT-TBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE----EEC----BCTTSSSCSS
T ss_pred             cccccccccc-ccccccccc-cccccccccccCcccccccccccccccccccccccccc----ccc----cccccccccc
Confidence            9999999999 888888887 89999999999999999999999999999998653110    000    1111233568


Q ss_pred             ccceeeeeECCCCceEEEeecCC
Q psy6859         239 KTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       239 ~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ...|++++|+|++++|++|+.||
T Consensus       238 ~~~V~~~~~s~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         238 SGSVFGLTWSPDGTKIASASADK  260 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccCCCCCEEEEEeCCC
Confidence            99999999999999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.1e-38  Score=241.49  Aligned_cols=245  Identities=17%  Similarity=0.221  Sum_probs=191.8

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe------------------eccccceeEEEEeeCCCEE
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF------------------RSHLGVIHSICTNYNGTLL   61 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~l   61 (261)
                      +|++.|+||+|+| +++||+|+ |++|+||++.++  +.+..+                  ..|...|++++|+|++++|
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEeccc--ceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence            5999999999999 89999987 899999999876  333333                  2466779999999999999


Q ss_pred             EEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEE
Q psy6859          62 CTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVEC  141 (261)
Q Consensus        62 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  141 (261)
                      ++|+.||.|++||...++.+..+..+...+....+.+++..++..    +.++.+++||.++...........   ...+
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~----~~~~~i~~~d~~~~~~~~~~~~~~---~~~~  209 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG----SGDRTVRIWDLRTGQCSLTLSIED---GVTT  209 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSEEEEEETTTTEEEEEEECSS---CEEE
T ss_pred             eeccccccccccccccccccccccccccccccccccccccccccc----ccceeeeeeecccccccccccccc---cccc
Confidence            999999999999999999988888778888888888877776665    899999999999887766655432   3445


Q ss_pred             EEEeC-CCCceEEEEecCCCeEEEEEccCCCccceeec------cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         142 IHYLG-DAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD------RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       142 ~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      +.+.+ ++..  +++++.|+.|++||.+ ++..+..+.      ..|...|++++|+|++++|++++.||.|++||+++.
T Consensus       210 ~~~~~~~~~~--l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         210 VAVSPGDGKY--IAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             EEECSTTCCE--EEEEETTSCEEEEETT-TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             ccccCCCCCe--EEEEcCCCeEEEeecc-cCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC
Confidence            55555 5543  7888999999999998 776665543      257889999999999999999999999999999754


Q ss_pred             cccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         215 EFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      .......   .............|...|.+++|+|++++|++|+.||
T Consensus       287 ~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg  330 (388)
T d1erja_         287 NNKSDSK---TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR  330 (388)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred             ccccccc---cccccceeeecccccceEEEEEECCCCCEEEEEeCCC
Confidence            3221110   0122344555667899999999999999999999986

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.4e-38  Score=233.76  Aligned_cols=235  Identities=17%  Similarity=0.220  Sum_probs=175.0

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe-eccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF-RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF   78 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~   78 (261)
                      ||+++|++|+|+| +++|++|+.||+|++||++++  +....+ .+|...|++++|+|+++ +++++.|+.+++|+....
T Consensus        10 GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~   86 (299)
T d1nr0a2          10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTG--ISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGS   86 (299)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSS
T ss_pred             CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCCc
Confidence            8999999999999 899999999999999999886  555665 46899999999999986 556678999999997532


Q ss_pred             ceee-------------eee---------------------------ccCcceeEEEEeecCCceeeeeeecCCCCeEEE
Q psy6859          79 DMIN-------------MIK---------------------------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHI  118 (261)
Q Consensus        79 ~~~~-------------~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i  118 (261)
                      ....             .+.                           ........+.++++++.+++.    +.|+.|++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g----~~dg~i~~  162 (299)
T d1nr0a2          87 GVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG----GQDSKVHV  162 (299)
T ss_dssp             SSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEE----ETTSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccc
Confidence            1100             000                           011123334445555544444    88999999


Q ss_pred             EEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccc---eeeccCcccCeEEEEEcCCCC
Q psy6859         119 YDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPL---HVLDRLHTKPVVLIKFNPIYQ  195 (261)
Q Consensus       119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~  195 (261)
                      ||+++++....... .++..+.+++|+|++.+  +++++.|+.|++||+. ++..+   ..+. .|..+|++++|+|+++
T Consensus       163 ~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~--l~~~~~d~~i~~~~~~-~~~~~~~~~~~~-~h~~~v~~l~~s~~~~  237 (299)
T d1nr0a2         163 YKLSGASVSEVKTI-VHPAEITSVAFSNNGAF--LVATDQSRKVIPYSVA-NNFELAHTNSWT-FHTAKVACVSWSPDNV  237 (299)
T ss_dssp             EEEETTEEEEEEEE-ECSSCEEEEEECTTSSE--EEEEETTSCEEEEEGG-GTTEESCCCCCC-CCSSCEEEEEECTTSS
T ss_pred             cccccccccccccc-ccccccccccccccccc--cccccccccccccccc-cccccccccccc-cccccccccccccccc
Confidence            99988765443322 24568999999999976  7888999999999998 55443   3444 7899999999999999


Q ss_pred             EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCC-ccceeeeeECCCCceEEEeecCC
Q psy6859         196 VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKN-KTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       196 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +|++++.||.|++||+++.             ....+.....| ...+..+. ++++++|+++|.||
T Consensus       238 ~l~sgs~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~  290 (299)
T d1nr0a2         238 RLATGSLDNSVIVWNMNKP-------------SDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDS  290 (299)
T ss_dssp             EEEEEETTSCEEEEETTCT-------------TSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTS
T ss_pred             ceEEEcCCCEEEEEECCCC-------------CcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCC
Confidence            9999999999999998652             12333333344 44566565 46678999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-37  Score=239.83  Aligned_cols=236  Identities=17%  Similarity=0.185  Sum_probs=196.8

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|...|++++|+| +++|++|+.||.|++|+....  +....+.+|...|.++.+++++..+++++.++.+++||..+..
T Consensus       119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  196 (388)
T d1erja_         119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  196 (388)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             CCCCCEEEEEECCCCCcceeccccccccccccccc--ccccccccccccccccccccccccccccccceeeeeeeccccc
Confidence            4778899999999 899999999999999999887  7888889999999999999999999999999999999999888


Q ss_pred             eeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec-----CCcceEEEEEEeCCCCceEEE
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD-----FTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  154 (261)
                      ...................++..++++    +.|+.|++||.+++.....+...     .+...+.++.|+|++..  ++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~--l~  270 (388)
T d1erja_         197 CSLTLSIEDGVTTVAVSPGDGKYIAAG----SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS--VV  270 (388)
T ss_dssp             EEEEEECSSCEEEEEECSTTCCEEEEE----ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE--EE
T ss_pred             cccccccccccccccccCCCCCeEEEE----cCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE--EE
Confidence            777766555555555544566666555    89999999999998877666432     24567999999999975  88


Q ss_pred             EecCCCeEEEEEccCCCcc------------ceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeee
Q psy6859         155 SDQDSSHVHIYDCKGNGTP------------LHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCV  222 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  222 (261)
                      +++.|+.|++||++ ....            ..... .|...|.+++|+|++++|++|+.||.|++||++          
T Consensus       271 s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~----------  338 (388)
T d1erja_         271 SGSLDRSVKLWNLQ-NANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK----------  338 (388)
T ss_dssp             EEETTSEEEEEEC----------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETT----------
T ss_pred             EEECCCcEEEEecc-CCccccccccccccceeeecc-cccceEEEEEECCCCCEEEEEeCCCEEEEEECC----------
Confidence            89999999999997 4322            22333 678899999999999999999999999999994          


Q ss_pred             eeecccccceeecCCCccceeeee------ECCCCceEEEeecCC
Q psy6859         223 HFESKLDTDLFEFAKNKTYPSGLS------FSPDGNKFVTISMDR  261 (261)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~v~~~~------~s~~~~~l~s~~~Dg  261 (261)
                           +++++..+++|.+.|.+++      |+|++++||+||.||
T Consensus       339 -----~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg  378 (388)
T d1erja_         339 -----SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  378 (388)
T ss_dssp             -----TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             -----CCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCC
Confidence                 4788899999999999886      578999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-35  Score=228.35  Aligned_cols=252  Identities=12%  Similarity=0.053  Sum_probs=189.8

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.++|++|+|+| +++|++|+.|++|+||++.+...+....+.+|...|.+++|+|++++|++++.|+.+++|++....
T Consensus        49 gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~  128 (371)
T d1k8kc_          49 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN  128 (371)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccc
Confidence            7999999999999 899999999999999999887556667778899999999999999999999999999999987654


Q ss_pred             eeee----eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCce----------------eeEEeecCCcceE
Q psy6859          80 MINM----IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDM----------------INMIKLDFTPLTV  139 (261)
Q Consensus        80 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~----------------~~~~~~~~~~~~~  139 (261)
                      ....    ...+...+..+.++|++..++++    +.|+.+++||+.....                ........+...+
T Consensus       129 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~----s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  204 (371)
T d1k8kc_         129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG----SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV  204 (371)
T ss_dssp             TEEEEEEECTTCCSCEEEEEECTTSSEEEEE----ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred             ccccccccccccccccccccccccccceecc----ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcE
Confidence            3322    22334556777888888777655    8999999999875431                1122334456679


Q ss_pred             EEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccc--cc
Q psy6859         140 ECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQE--FK  217 (261)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~  217 (261)
                      .+++|+|++..  +++++.|+.|++||+. .++.+..+. .|..+|.+++|+|++++|++|. |+.+++|......  ..
T Consensus       205 ~~~~~s~~g~~--l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~  279 (371)
T d1k8kc_         205 HGVCFSANGSR--VAWVSHDSTVCLADAD-KKMAVATLA-SETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLS  279 (371)
T ss_dssp             EEEEECSSSSE--EEEEETTTEEEEEEGG-GTTEEEEEE-CSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEE
T ss_pred             EEEEeeccccc--ccccccCCcceEEeee-cccceeeee-cccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEE
Confidence            99999999975  7888899999999999 888888887 8999999999999999888766 6777776654321  11


Q ss_pred             CC------eeee------------eec------ccccceeecCCCccceeeeeECCCC----ceEEEeecCC
Q psy6859         218 FP------KCVH------------FES------KLDTDLFEFAKNKTYPSGLSFSPDG----NKFVTISMDR  261 (261)
Q Consensus       218 ~~------~~~~------------~~~------~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~Dg  261 (261)
                      ..      ....            .+.      ...........|.+.|+++++.|.+    ..|+|+|.||
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg  351 (371)
T d1k8kc_         280 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG  351 (371)
T ss_dssp             ECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred             EeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCC
Confidence            11      0000            000      0001111123489999999998754    3589999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=223.18  Aligned_cols=228  Identities=16%  Similarity=0.235  Sum_probs=172.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||++.|.+ ++++ +++||||+.||+|+|||+.++  +++.++.+|.+.|.+++|+|+  +|++++.|+.+++|+.....
T Consensus        14 GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~--~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~   88 (342)
T d2ovrb2          14 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGE   88 (342)
T ss_dssp             CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC--CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTE
T ss_pred             CcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCC--CEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccccccc
Confidence            89999865 3555 889999999999999999887  788999999999999999875  99999999999999976432


Q ss_pred             eeeeeec-------------------------------------------------------------------------
Q psy6859          80 MINMIKL-------------------------------------------------------------------------   86 (261)
Q Consensus        80 ~~~~~~~-------------------------------------------------------------------------   86 (261)
                      .......                                                                         
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~  168 (342)
T d2ovrb2          89 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET  168 (342)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE
T ss_pred             ceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccce
Confidence            2211100                                                                         


Q ss_pred             -----cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          87 -----DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        87 -----~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                           ..+........+++..++    +++.|+.|++||++.++.+..+..+  ...+.++.++++.    +++++.|+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~----s~~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~----l~s~s~d~~  238 (342)
T d2ovrb2         169 CLHTLQGHTNRVYSLQFDGIHVV----SGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMELKDNI----LVSGNADST  238 (342)
T ss_dssp             EEEEECCCSSCEEEEEECSSEEE----EEETTSCEEEEETTTCCEEEEECCC--CSCEEEEEEETTE----EEEEETTSC
T ss_pred             eeEEEcCcccccccccCCCCEEE----EEeCCCeEEEeecccceeeeEeccc--ccceeEEecCCCE----EEEEcCCCE
Confidence                 000111122222333333    3488999999999999888777654  4567888888753    889999999


Q ss_pred             EEEEEccCCCccceeec--cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeec----
Q psy6859         162 VHIYDCKGNGTPLHVLD--RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEF----  235 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----  235 (261)
                      |++||+. ..+....+.  ..|...+.++.++  ++++++++.||.|++||+++               ++.++.+    
T Consensus       239 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t---------------g~~i~~~~~~~  300 (342)
T d2ovrb2         239 VKIWDIK-TGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT---------------GEFIRNLVTLE  300 (342)
T ss_dssp             EEEEETT-TCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT---------------CCEEEEEEECT
T ss_pred             EEEEecc-cccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCC---------------CCEEEEEeccc
Confidence            9999998 766666664  1355666666665  56899999999999999954               4555444    


Q ss_pred             -CCCccceeeeeECCCCceEEEeecCC
Q psy6859         236 -AKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       236 -~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                       .+|...|++++|+|++.+||+|+.||
T Consensus       301 ~~~~~~~v~~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         301 SGGSGGVVWRIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             TGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence             35788999999999999999999886

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-34  Score=217.23  Aligned_cols=244  Identities=15%  Similarity=0.223  Sum_probs=182.7

Q ss_pred             CCCCCe-EEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPI-THVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v-~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      ||.+.| +|++|+ +++|++|+.||+|+|||+.++  +++.++.+|.++|++++|+|+ .+|++++.|+.|++|+....+
T Consensus        10 GH~~~vitc~~~~-~~~l~tgs~Dg~i~vWd~~~~--~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~   85 (355)
T d1nexb2          10 GHMTSVITCLQFE-DNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC   85 (355)
T ss_dssp             CCSSSCEEEEEEE-TTEEEEEETTTEEEEEETTTT--EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTE
T ss_pred             CcCCCcEEEEEEC-CCEEEEEeCCCeEEEEECCCC--cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccc
Confidence            898885 677665 789999999999999999987  889999999999999999986 489999999999999998877


Q ss_pred             eeeeeeccCcceeEEE--EeecCCceeeeeeecCCCCeEEEEEcC-----------------------------------
Q psy6859          80 MINMIKLDFTPLTVEC--IHYLGDAIPTAAVSDQDSSRVHIYDCK-----------------------------------  122 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~d~~i~i~d~~-----------------------------------  122 (261)
                      ................  ..+++..++..    +.|+.|++||++                                   
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          86 CTHVFEGHNSTVRCLDIVEYKNIKYIVTG----SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             EEEEECCCSSCEEEEEEEEETTEEEEEEE----ETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             cccccccccccccccccccccccceeeee----cCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence            6655543333222222  22222222222    555666666554                                   


Q ss_pred             ----------------------------CCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccc
Q psy6859         123 ----------------------------GNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPL  174 (261)
Q Consensus       123 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  174 (261)
                                                  +++.+.....  ....+.++.++|++..  +++++.|+.|++||++ ++.++
T Consensus       162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~d~~i~i~d~~-~~~~~  236 (355)
T d1nexb2         162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG--HTDRIYSTIYDHERKR--CISASMDTTIRIWDLE-NGELM  236 (355)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEETTTTE--EEEEETTSCEEEEETT-TCCEE
T ss_pred             ccccccccccceeeeecccceeeeeecccccceeeeec--ccccccccccccccee--eecccccceEEeeecc-ccccc
Confidence                                        3333322222  2345677888888875  7888899999999999 88999


Q ss_pred             eeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccC-------------------------Ceeeeeecccc
Q psy6859         175 HVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKF-------------------------PKCVHFESKLD  229 (261)
Q Consensus       175 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------~~~~~~~~~~~  229 (261)
                      ..+. +|...|.++++++  ++|++++.||.|++||+++.....                         .....|+.+++
T Consensus       237 ~~~~-~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg  313 (355)
T d1nexb2         237 YTLQ-GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSG  313 (355)
T ss_dssp             EEEC-CCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTC
T ss_pred             cccc-ccccccccccccc--ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCC
Confidence            9998 9999999999874  689999999999999987653211                         01134666777


Q ss_pred             ccee-ecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         230 TDLF-EFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       230 ~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +++. .+.+|..+|++++|+|+ .++++++.||
T Consensus       314 ~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg  345 (355)
T d1nexb2         314 KLVHANILKDADQIWSVNFKGK-TLVAAVEKDG  345 (355)
T ss_dssp             CBCCSCTTTTCSEEEEEEEETT-EEEEEEESSS
T ss_pred             CEEEEEecCCCCCEEEEEEcCC-eEEEEEECCC
Confidence            7775 46779999999999997 5788888886

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=212.06  Aligned_cols=234  Identities=17%  Similarity=0.244  Sum_probs=178.3

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      +|...|+|++|+ +++||||+.||+|+|||+++.  +++.++++|.++|++++|  ++++|++|+.|+.|++|++..+..
T Consensus        13 ~~~~~V~c~~~d-~~~l~sgs~Dg~i~vWd~~~~--~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~   87 (293)
T d1p22a2          13 ETSKGVYCLQYD-DQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM   87 (293)
T ss_dssp             SSCCCEEEEECC-SSEEEEEESSSCEEEEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             CCCCCEEEEEEc-CCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCEeeeec--ccceeecccccccccccccccccc
Confidence            477899998764 789999999999999999987  888999999999999887  567999999999999999987654


Q ss_pred             eeeeeccCc-----------------------------------------ceeEEEEeecCCceeeeeeecCCCCeEEEE
Q psy6859          81 INMIKLDFT-----------------------------------------PLTVECIHYLGDAIPTAAVSDQDSSRVHIY  119 (261)
Q Consensus        81 ~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~  119 (261)
                      .........                                         ...+....+....+.    +++.|+.+++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~s~d~~i~~~  163 (293)
T d1p22a2          88 LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV----SASGDRTIKVW  163 (293)
T ss_dssp             EEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE----EEETTSEEEEE
T ss_pred             cccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccc----cccCCCceeee
Confidence            433221110                                         011111122222222    34789999999


Q ss_pred             EcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEE
Q psy6859         120 DCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVS  199 (261)
Q Consensus       120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  199 (261)
                      |+++++.+..+..+  ...+..+.+++..    +++++.|+.|++||++ +.+.+..+. .+...+..  +++++.+|++
T Consensus       164 d~~~~~~~~~~~~~--~~~v~~~~~~~~~----l~~~~~dg~i~i~d~~-~~~~~~~~~-~~~~~v~~--~~~~~~~l~s  233 (293)
T d1p22a2         164 NTSTCEFVRTLNGH--KRGIACLQYRDRL----VVSGSSDNTIRLWDIE-CGACLRVLE-GHEELVRC--IRFDNKRIVS  233 (293)
T ss_dssp             ETTTCCEEEEEECC--SSCEEEEEEETTE----EEEEETTSCEEEEETT-TCCEEEEEC-CCSSCEEE--EECCSSEEEE
T ss_pred             cCCCCcEEEEEccc--ccccccccCCCCe----EEEecCCCEEEEEecc-cceeeeeec-ccceeeee--ccccceEEEE
Confidence            99999988887754  3467777777654    8888999999999999 888888887 78877765  5667889999


Q ss_pred             EcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         200 VDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       200 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++.||.|++||+........      .....++..+.+|.+.|++++|+  +++|++||.||
T Consensus       234 g~~dg~i~iwd~~~~~~~~~------~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg  287 (293)
T d1p22a2         234 GAYDGKIKVWDLVAALDPRA------PAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDD  287 (293)
T ss_dssp             EETTSCEEEEEHHHHTSTTS------CTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSS
T ss_pred             EcCCCEEEEEECCCCccccc------cCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCC
Confidence            99999999999865321110      12234667888999999999994  57899999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-34  Score=218.13  Aligned_cols=240  Identities=14%  Similarity=0.178  Sum_probs=187.0

Q ss_pred             CC-CCCeEEEEEcC---CCeEEEecCCCeEEEEeccCCc------eeeeEEeeccccceeEEEEeeCCCEEEEEeC--CC
Q psy6859           1 MH-RSPITHVVVTK---TDFVITASNDGHIKFWKKQEEG------IEFVKHFRSHLGVIHSICTNYNGTLLCTVAS--DK   68 (261)
Q Consensus         1 gH-~~~v~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg   68 (261)
                      || ...|++++|+|   +.+|++|+.||+|+|||+....      ......+..|.++|.+++|+++++++++++.  ++
T Consensus        60 gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~  139 (325)
T d1pgua1          60 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN  139 (325)
T ss_dssp             TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC
T ss_pred             CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccc
Confidence            56 46899999997   4689999999999999986532      1222345678899999999999999988764  67


Q ss_pred             cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee-cCCcceEEEEEEeCC
Q psy6859          69 AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-DFTPLTVECIHYLGD  147 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~  147 (261)
                      .+++|+..+++.+..+..+..++..+.+.+.+..++.   +++.|+.+++||++..+....+.. ..+...+.+++|+|+
T Consensus       140 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~---~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd  216 (325)
T d1pgua1         140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM---TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD  216 (325)
T ss_dssp             SEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEE---EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred             eEEEEeecccccceeeeecccccccccccccccceEE---EeecccccccccccccccceecccccCCCCccEEeeeccc
Confidence            8999999999999988877788888888887765432   237899999999988776665543 345567999999997


Q ss_pred             CCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc---CCCCEEEEEcCCCeEEEeecccccccCCeeeee
Q psy6859         148 AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN---PIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHF  224 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  224 (261)
                      ... ++++++.|+.|++||++ +++.+..+. .|..++.++.|+   |++++|++++.|+.|+|||+++           
T Consensus       217 ~~~-~l~s~~~d~~i~iwd~~-~~~~~~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~-----------  282 (325)
T d1pgua1         217 SGE-FVITVGSDRKISCFDGK-SGEFLKYIE-DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT-----------  282 (325)
T ss_dssp             TCC-EEEEEETTCCEEEEETT-TCCEEEECC-BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT-----------
T ss_pred             cce-eccccccccceeeeeec-ccccccccc-ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC-----------
Confidence            543 37888899999999999 899999997 788877666665   7899999999999999999954           


Q ss_pred             ecccccceeecCCCcc--ceeeeeECCC-CceEEEeecCC
Q psy6859         225 ESKLDTDLFEFAKNKT--YPSGLSFSPD-GNKFVTISMDR  261 (261)
Q Consensus       225 ~~~~~~~~~~~~~~~~--~v~~~~~s~~-~~~l~s~~~Dg  261 (261)
                          ++++..+..|..  .+..+++.+. +.+|+++|.||
T Consensus       283 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg  318 (325)
T d1pgua1         283 ----SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG  318 (325)
T ss_dssp             ----TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred             ----CCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCC
Confidence                566666555443  3444444433 24788999886

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.8e-34  Score=210.66  Aligned_cols=227  Identities=13%  Similarity=0.134  Sum_probs=170.8

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      ||+++|++++|+|   |+||+.||+|++||+.+.       .++|...|.++.+++++ .+++++.|+++++|++...+.
T Consensus        11 gH~~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~   79 (287)
T d1pgua2          11 GHNKGITALTVNP---LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEF   79 (287)
T ss_dssp             CCSSCEEEEETTT---TEEEETTSCEEETTTTEE-------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEEC
T ss_pred             CCCCceEEEEECc---EEEEeCCCeEEEEECCCC-------CCCCCCCEEEEEecCCC-eEEEEeecccccccccccccc
Confidence            8999999999997   999999999999998753       25789999999998764 678999999999998754321


Q ss_pred             e---eeee--------------------cc--------CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE
Q psy6859          81 I---NMIK--------------------LD--------FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM  129 (261)
Q Consensus        81 ~---~~~~--------------------~~--------~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  129 (261)
                      .   ..+.                    ..        ........+.++++.++..   +..++.+++|++...+....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~v~~~~~~~~~~~~~  156 (287)
T d1pgua2          80 GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVG---LEEGNTIQVFKLSDLEVSFD  156 (287)
T ss_dssp             SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEE---ETTTSCEEEEETTEEEEEEE
T ss_pred             ccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeee---ccccceeeeeeccccceeee
Confidence            0   0000                    00        0001123344455444333   34556899999886655444


Q ss_pred             EeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccce-eeccCcccCeEEEEEcCC----------CCEEE
Q psy6859         130 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLH-VLDRLHTKPVVLIKFNPI----------YQVVV  198 (261)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~----------~~~l~  198 (261)
                      +... +...+.+++|+|++.+  +++|+.||.|++||+. +++.+. .+. .|..+|.+++|+|.          +.+|+
T Consensus       157 ~~~~-~~~~v~~~~~s~~~~~--l~~g~~dg~i~i~d~~-~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~~~~l~  231 (287)
T d1pgua2         157 LKTP-LRAKPSYISISPSETY--IAAGDVMGKILLYDLQ-SREVKTSRWA-FRTSKINAISWKPAEKGANEEEIEEDLVA  231 (287)
T ss_dssp             CSSC-CSSCEEEEEECTTSSE--EEEEETTSCEEEEETT-TTEEEECCSC-CCSSCEEEEEECCCC------CCSCCEEE
T ss_pred             eeec-cCCceeEEEeccCccc--cccccccccccceeec-cccccccccc-ccccccceeeecccccccccccCCCCeeE
Confidence            4332 3457899999999976  8899999999999998 665544 455 89999999999875          45899


Q ss_pred             EEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         199 SVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       199 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +|+.|+.|++||++.              ..+.+..+.+|...|++++|+|++ .|+++|.||
T Consensus       232 sgs~D~~i~iw~~~~--------------~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~  279 (287)
T d1pgua2         232 TGSLDTNIFIYSVKR--------------PMKIIKALNAHKDGVNNLLWETPS-TLVSSGADA  279 (287)
T ss_dssp             EEETTSCEEEEESSC--------------TTCCEEETTSSTTCEEEEEEEETT-EEEEEETTS
T ss_pred             eecCCCeEEEEECCC--------------CCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCC
Confidence            999999999999853              245677788999999999999986 588898886

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.2e-33  Score=206.51  Aligned_cols=202  Identities=18%  Similarity=0.249  Sum_probs=176.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      +|...+.++.|+| ++.+++++.|+.+++|++.+.  +....+.+|...+.+++|++++++|++++.|+.|++|++.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~  176 (317)
T d1vyhc1          99 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE  176 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cccccceeeeccCCCceEEeeccCcceeEeecccc--eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce
Confidence            5788999999999 899999999999999999987  7788899999999999999999999999999999999999998


Q ss_pred             eeeeeeccCcceeEEEEeecCCcee----------------eeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEE
Q psy6859          80 MINMIKLDFTPLTVECIHYLGDAIP----------------TAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIH  143 (261)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  143 (261)
                      ....+..+........+.+......                ...++++.|+.|++||+++++++..+..  +...+.++.
T Consensus       177 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~v~~~~  254 (317)
T d1vyhc1         177 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVL  254 (317)
T ss_dssp             EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEE
T ss_pred             eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC--CCCCEEEEE
Confidence            8888776666666666655432211                1123458899999999999998888876  445789999


Q ss_pred             EeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEee
Q psy6859         144 YLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWS  210 (261)
Q Consensus       144 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  210 (261)
                      ++|++..  +++++.||.|++||++ +++++..+. +|..+|++++|+|++++|++++.||.|++||
T Consensus       255 ~~~~~~~--l~s~~~dg~i~iwd~~-~~~~~~~~~-~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         255 FHSGGKF--ILSCADDKTLRVWDYK-NKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECSSSSC--EEEEETTTEEEEECCT-TSCCCEEEE-CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ECCCCCE--EEEEECCCeEEEEECC-CCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999976  8889999999999999 899999998 9999999999999999999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-32  Score=207.14  Aligned_cols=236  Identities=13%  Similarity=0.125  Sum_probs=185.9

Q ss_pred             CeEEEEEcC-CCeEEEecCCC-eEEEEeccCCceeeeEEeeccc-cceeEEEEee--CCCEEEEEeCCCcEEEEEccccc
Q psy6859           5 PITHVVVTK-TDFVITASNDG-HIKFWKKQEEGIEFVKHFRSHL-GVIHSICTNY--NGTLLCTVASDKAMKVFDVINFD   79 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~s~~~dg~v~~wd~~~~~   79 (261)
                      .+++++|+| ++.|+.++.+. .|+.|+...........+.+|. ..|++++|+|  ++++|++|+.||+|++||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            567899999 88888876554 4667776554445667777875 6799999998  67899999999999999997655


Q ss_pred             eeee--------eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCce
Q psy6859          80 MINM--------IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPT  151 (261)
Q Consensus        80 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (261)
                      ....        +..+..++..+.+++++..++++  +.+.++.+.+|+.++++.+..+..  +...+.+++|+|++...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~  174 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV--GEGRDNFGVFISWDSGNSLGEVSG--HSQRINACHLKQSRPMR  174 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE--ECCSSCSEEEEETTTCCEEEECCS--CSSCEEEEEECSSSSCE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCcccee--eccccceEEEEeecccccceeeee--cccccccccccccccce
Confidence            3332        23445567778888888776654  335688999999999988887765  45578999999998753


Q ss_pred             EEEEecCCCeEEEEEccCCCccceeec--cCcccCeEEEEEcCC-CCEEEEEcCCCeEEEeecccccccCCeeeeeeccc
Q psy6859         152 AAVSDQDSSHVHIYDCKGNGTPLHVLD--RLHTKPVVLIKFNPI-YQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKL  228 (261)
Q Consensus       152 ~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  228 (261)
                       +++++.|+.+++||.. ..+....+.  ..|...|++++|+|+ +.+|++++.|+.|++||++               +
T Consensus       175 -~~~~~~d~~v~~~d~~-~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~---------------~  237 (325)
T d1pgua1         175 -SMTVGDDGSVVFYQGP-PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK---------------S  237 (325)
T ss_dssp             -EEEEETTTEEEEEETT-TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT---------------T
T ss_pred             -EEEeeccccccccccc-ccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec---------------c
Confidence             6778889999999997 665544443  257788999999997 5789999999999999984               4


Q ss_pred             ccceeecCCCccceeeeeEC---CCCceEEEeecCC
Q psy6859         229 DTDLFEFAKNKTYPSGLSFS---PDGNKFVTISMDR  261 (261)
Q Consensus       229 ~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~Dg  261 (261)
                      ++.+..+.+|..++.++.|+   |+|++|++++.||
T Consensus       238 ~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~  273 (325)
T d1pgua1         238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA  273 (325)
T ss_dssp             CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS
T ss_pred             ccccccccccccccccceeeeeccCCCEEEEEeCCC
Confidence            67788888999888888877   7899999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.2e-32  Score=203.69  Aligned_cols=202  Identities=14%  Similarity=0.208  Sum_probs=174.7

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCc--eeeeEE------------------------------------
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEG--IEFVKH------------------------------------   41 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~--~~~~~~------------------------------------   41 (261)
                      +|..+|++++|+| +.++++|+.|+.+++|+.....  ......                                    
T Consensus        95 ~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (340)
T d1tbga_          95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG  174 (340)
T ss_dssp             CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTT
T ss_pred             cccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccc
Confidence            5899999999999 8999999999999999875421  011111                                    


Q ss_pred             -----eeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859          42 -----FRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRV  116 (261)
Q Consensus        42 -----~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i  116 (261)
                           ...+...+....+.+.+.++++++.|+.|++||+.+++.+..+..+..++..+.+++++..++++    +.|+.|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~----s~d~~i  250 (340)
T d1tbga_         175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG----SDDATC  250 (340)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE----ETTSCE
T ss_pred             cccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEE----eCCCeE
Confidence                 11234556777788888899999999999999999999999988888888888999988877766    899999


Q ss_pred             EEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCE
Q psy6859         117 HIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQV  196 (261)
Q Consensus       117 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  196 (261)
                      ++||++....+..+........+.++.|+|++.+  +++|+.||.|++||+. +++++..+. +|..+|++++|+|++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~g~~dg~i~iwd~~-~~~~~~~~~-~H~~~V~~l~~s~d~~~  326 (340)
T d1tbga_         251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRL--LLAGYDDFNCNVWDAL-KADRAGVLA-GHDNRVSCLGVTDDGMA  326 (340)
T ss_dssp             EEEETTTTEEEEEECCTTCCSCEEEEEECSSSCE--EEEEETTSCEEEEETT-TCCEEEEEC-CCSSCEEEEEECTTSSC
T ss_pred             EEEeecccccccccccccccCceEEEEECCCCCE--EEEEECCCEEEEEECC-CCcEEEEEc-CCCCCEEEEEEeCCCCE
Confidence            9999999988888877777778999999999975  8889999999999999 899999998 99999999999999999


Q ss_pred             EEEEcCCCeEEEee
Q psy6859         197 VVSVDKAGILEYWS  210 (261)
Q Consensus       197 l~~~~~dg~i~iwd  210 (261)
                      |++|+.||.|++||
T Consensus       327 l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         327 VATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEETTSCEEEEC
T ss_pred             EEEEccCCEEEEeC
Confidence            99999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-32  Score=210.09  Aligned_cols=254  Identities=12%  Similarity=0.123  Sum_probs=164.4

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCce----eeeEEeeccccceeEEEEe-------eCCCEEEEEeCCCc
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGI----EFVKHFRSHLGVIHSICTN-------YNGTLLCTVASDKA   69 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~----~~~~~~~~~~~~v~~~~~~-------~~~~~l~s~~~dg~   69 (261)
                      ||++.|.++++++ ++++|++.|++|+|||....+.    ........|...+..+...       .+..++++++.||.
T Consensus        12 ~H~~~I~~v~~~~-~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~   90 (393)
T d1sq9a_          12 AHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD   90 (393)
T ss_dssp             CSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred             cccCccEEEEEeC-CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCc
Confidence            7999999999875 6899999999999999765321    1122223344433333221       13357889999999


Q ss_pred             EEEEEccccceeeeee----------ccCcceeEEEEeecCCce-eeeeeecCCCCeEEEEEcCCCce-----------e
Q psy6859          70 MKVFDVINFDMINMIK----------LDFTPLTVECIHYLGDAI-PTAAVSDQDSSRVHIYDCKGNDM-----------I  127 (261)
Q Consensus        70 v~~wd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~d~~i~i~d~~~~~~-----------~  127 (261)
                      +++|++........+.          ..........+.+..... ...+++++.|+.+++|++.....           .
T Consensus        91 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  170 (393)
T d1sq9a_          91 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPT  170 (393)
T ss_dssp             EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCE
T ss_pred             EEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccc
Confidence            9999987543222111          111223333444332211 11123347899999999853210           0


Q ss_pred             e----EE-eecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec-----cCcccCeEEEEEcCCCCEE
Q psy6859         128 N----MI-KLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-----RLHTKPVVLIKFNPIYQVV  197 (261)
Q Consensus       128 ~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l  197 (261)
                      .    .. ........+.+++|+|++   ++++|+.|++|++||+. +++++..++     .+|..+|++++|+|+|++|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~v~~s~dg---~lasgs~Dg~i~iwd~~-~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  246 (393)
T d1sq9a_         171 LELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELS-TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL  246 (393)
T ss_dssp             EEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETT-TTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             eecccceecccCCCCcEEEEEECCCC---EEEEEeCCCcEEEEeec-ccccccccccccccccccceEEEccccccccee
Confidence            0    01 111233457889999998   38899999999999998 777765543     2688999999999999999


Q ss_pred             EEEcCCC---eEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         198 VSVDKAG---ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       198 ~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      ++|+.|+   .|++||++++....  ..............+.+|...|++++|+||+++|++||.||
T Consensus       247 ~sgs~D~t~~~i~lwd~~~g~~~~--~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~  311 (393)
T d1sq9a_         247 AIAHDSNSFGCITLYETEFGERIG--SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  311 (393)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEE--EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             eeecCCCCcceeeecccccceeee--eeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC
Confidence            9999887   48999986542210  01111122233344568999999999999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-31  Score=202.31  Aligned_cols=254  Identities=9%  Similarity=-0.020  Sum_probs=175.3

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCce-eeeEEeeccccceeEEEEeeC-CCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGI-EFVKHFRSHLGVIHSICTNYN-GTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~v~~wd~~~   77 (261)
                      +|++.|++|+|+| +++||+|+.||+|+|||++.... .......+|.++|.+++|+|+ +.+|++|+.|+.|++|++..
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~   88 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence            6999999999999 99999999999999999976421 223334469999999999986 55899999999999999988


Q ss_pred             cceeeeeeccCcce-eEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEe----ecCCcceEEEEEEeCCCCceE
Q psy6859          78 FDMINMIKLDFTPL-TVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIK----LDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        78 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      .............. ......+....+++.    +.++.+++||++.........    ..........+.+.+....  
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  162 (342)
T d1yfqa_          89 SPSFQALTNNEANLGICRICKYGDDKLIAA----SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--  162 (342)
T ss_dssp             SSSEEECBSCCCCSCEEEEEEETTTEEEEE----ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--
T ss_pred             cccccccccccccccccccccccccccccc----ccccccceeeccccccceeeecccccccccceeeeeeeeccCCc--
Confidence            77666555444333 334444555555555    899999999987654333222    1112223334455555543  


Q ss_pred             EEEecCCCeEEEEEccCCCccceeec--cCcccCeEEEEEc-CCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLD--RLHTKPVVLIKFN-PIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLD  229 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  229 (261)
                      +++++.|+.|++||++ .........  ......+....+. +++..+++++.||.+.+|+...................
T Consensus       163 ~~~~~~d~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLP-LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEESTTEEEEEESS-CCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             eeeecCCCcEEEEecc-cCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            7888899999999998 554333221  1344555665555 46678999999999999998654322221111111112


Q ss_pred             cceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         230 TDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       230 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +.......|...|++++|+|++++||+||.||
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg  273 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCC
Confidence            22233456778899999999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.5e-32  Score=201.41  Aligned_cols=205  Identities=15%  Similarity=0.135  Sum_probs=160.1

Q ss_pred             eeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeee-ccCcceeEEEEeecCCceeeeeeecCCCCe
Q psy6859          37 EFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIK-LDFTPLTVECIHYLGDAIPTAAVSDQDSSR  115 (261)
Q Consensus        37 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~  115 (261)
                      +..+.++||.++|++++|+|++++|++|+.||+|++||+.+++....+. .+..++..+.+.+++.. +++    +.|+.
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~----~~d~~   77 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTV----SWDDH   77 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEE----ETTTE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecc----cceee
Confidence            5678899999999999999999999999999999999999998887774 45667788888887753 333    68999


Q ss_pred             EEEEEcCCCcee-------------eEEee-------------------------cCCcceEEEEEEeCCCCceEEEEec
Q psy6859         116 VHIYDCKGNDMI-------------NMIKL-------------------------DFTPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus       116 i~i~d~~~~~~~-------------~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      +++|+.......             ..+..                         ......+.+++++|++..  +++++
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~--l~~g~  155 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF--VAVGG  155 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE--EEEEE
T ss_pred             EEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccc
Confidence            999987542210             00000                         001124677888898875  78889


Q ss_pred             CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         158 DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       158 ~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      .|+.|++||++ +++........|..+|++++|+|++++|++++.|+.|++||+.++.            .......+.+
T Consensus       156 ~dg~i~~~d~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------------~~~~~~~~~~  222 (299)
T d1nr0a2         156 QDSKVHVYKLS-GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF------------ELAHTNSWTF  222 (299)
T ss_dssp             TTSEEEEEEEE-TTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT------------EESCCCCCCC
T ss_pred             ccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc------------cccccccccc
Confidence            99999999998 6654332222688999999999999999999999999999986531            1233445677


Q ss_pred             CccceeeeeECCCCceEEEeecCC
Q psy6859         238 NKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      |...|++++|+|++++|++|+.||
T Consensus       223 h~~~v~~l~~s~~~~~l~sgs~dg  246 (299)
T d1nr0a2         223 HTAKVACVSWSPDNVRLATGSLDN  246 (299)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccceEEEcCCC
Confidence            999999999999999999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.3e-30  Score=199.01  Aligned_cols=220  Identities=13%  Similarity=0.138  Sum_probs=161.1

Q ss_pred             CeEEEecCCCeEEEEeccCCcee--ee-EE-----eeccccceeEEEEeeC-----CCEEEEEeCCCcEEEEEccccce-
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIE--FV-KH-----FRSHLGVIHSICTNYN-----GTLLCTVASDKAMKVFDVINFDM-   80 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~--~~-~~-----~~~~~~~v~~~~~~~~-----~~~l~s~~~dg~v~~wd~~~~~~-   80 (261)
                      .++++++.||.|++|++......  .. ..     ...+...+..++|.++     +.++++++.||.+++|++..... 
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            46889999999999997653211  11 11     1224556778888764     46889999999999999853210 


Q ss_pred             --------------eeee---eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec----CCcceE
Q psy6859          81 --------------INMI---KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD----FTPLTV  139 (261)
Q Consensus        81 --------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~  139 (261)
                                    ....   ........++.+++++ .+    ++|+.|++|++||+++++++..+...    .+...|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~l----asgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V  234 (393)
T d1sq9a_         160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI----ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  234 (393)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE----EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             cceeeeeeccceecccceecccCCCCcEEEEEECCCC-EE----EEEeCCCcEEEEeecccccccccccccccccccceE
Confidence                          0000   1112224455666654 33    34599999999999999887766532    356689


Q ss_pred             EEEEEeCCCCceEEEEecCCC---eEEEEEccCCCccceeec------------cCcccCeEEEEEcCCCCEEEEEcCCC
Q psy6859         140 ECIHYLGDAIPTAAVSDQDSS---HVHIYDCKGNGTPLHVLD------------RLHTKPVVLIKFNPIYQVVVSVDKAG  204 (261)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~d~---~i~i~d~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~~~~~dg  204 (261)
                      .+++|+|++..  +++|+.|+   .|++||++ +++.+..+.            .+|...|++++|+|++++|++++.|+
T Consensus       235 ~~l~~spdg~~--l~sgs~D~t~~~i~lwd~~-~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~  311 (393)
T d1sq9a_         235 RSVKFSPQGSL--LAIAHDSNSFGCITLYETE-FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  311 (393)
T ss_dssp             EEEEECSSTTE--EEEEEEETTEEEEEEEETT-TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             EEcccccccce--eeeecCCCCcceeeecccc-cceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC
Confidence            99999999985  88888776   49999998 777666553            16999999999999999999999999


Q ss_pred             eEEEeecccccccCCeeeeeecccccceeecCCCcccee----eeeECCCCceEEEe
Q psy6859         205 ILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPS----GLSFSPDGNKFVTI  257 (261)
Q Consensus       205 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~s~~~~~l~s~  257 (261)
                      +|++||++               +++++.++++|...|.    .++|+|++..++++
T Consensus       312 ~v~vWd~~---------------~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         312 KLRFWDVK---------------TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             EEEEEETT---------------TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             EEEEEECC---------------CCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            99999994               4788888999988775    47788887766544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.6e-27  Score=179.31  Aligned_cols=238  Identities=12%  Similarity=0.066  Sum_probs=164.6

Q ss_pred             CCCCCeEEEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccc-cceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL-GVIHSICTNYNGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      +|..+|++++|+|  +.+|++|+.|+.|++|+....  ........+. .......+.++...+++++.++.+++||++.
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS--PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS--SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc--cccccccccccccccccccccccccccccccccccceeeccc
Confidence            5899999999998  458999999999999999876  3333333333 3344555667888999999999999999876


Q ss_pred             cceeeeeec------cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee-cCCcceEEEEEEeCCCCc
Q psy6859          78 FDMINMIKL------DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL-DFTPLTVECIHYLGDAIP  150 (261)
Q Consensus        78 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  150 (261)
                      +........      .........+...+..++..    +.|+.|++||++..+....... ........+..+.+....
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (342)
T d1yfqa_         132 YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG----MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE  207 (342)
T ss_dssp             HTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE----ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC
T ss_pred             cccceeeecccccccccceeeeeeeeccCCceeee----cCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCC
Confidence            543332221      11223344555666666555    8999999999987764433322 222334555555554332


Q ss_pred             eEEEEecCCCeEEEEEccCCCccc-----eee------c--cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccccccc
Q psy6859         151 TAAVSDQDSSHVHIYDCKGNGTPL-----HVL------D--RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFK  217 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~~~~~-----~~~------~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  217 (261)
                       .+++++.||.+.+|+........     ..+      .  ..|...+++++|+|++++|++|+.||.|++||+++    
T Consensus       208 -~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~----  282 (342)
T d1yfqa_         208 -GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT----  282 (342)
T ss_dssp             -EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT----
T ss_pred             -EEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC----
Confidence             37788889999999986221111     000      0  14667899999999999999999999999999954    


Q ss_pred             CCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         218 FPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                 ++.+..+..+ ..+..++|+|++++|++++.|+
T Consensus       283 -----------~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         283 -----------RKKIKNFAKF-NEDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             -----------TEEEEECCCC-SSSEEEEEEECSSEEEEEEECT
T ss_pred             -----------CcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCC
Confidence                       5666666543 3445678888999999987763

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.3e-26  Score=170.56  Aligned_cols=197  Identities=13%  Similarity=0.145  Sum_probs=150.2

Q ss_pred             eeEEeeccccce-eEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeE
Q psy6859          38 FVKHFRSHLGVI-HSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRV  116 (261)
Q Consensus        38 ~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i  116 (261)
                      ...++++|.+.| +|+  ++++++|++|+.||+|++||+.+++.+.+++.+..++..+.++++ +.++++    +.|+.|
T Consensus         4 ~~~tL~GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~----s~D~~i   76 (355)
T d1nexb2           4 QRTTLRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSG----STDRTV   76 (355)
T ss_dssp             EEEEEECCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEE----ETTCCE
T ss_pred             CcEEECCcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEE----eccccc
Confidence            356789998886 555  456789999999999999999999999999988888888888764 444444    899999


Q ss_pred             EEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccC---------------------------
Q psy6859         117 HIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKG---------------------------  169 (261)
Q Consensus       117 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---------------------------  169 (261)
                      ++|++...+..................+.++...  +++++.|+.|++||++.                           
T Consensus        77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY--IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEE--EEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccccccce--eeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            9999998877666554444444455555555543  55556666666666541                           


Q ss_pred             -----------------------------------CCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         170 -----------------------------------NGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       170 -----------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                                                         +++.+.... .+...+.++.|+|+++++++++.|+.|++||++  
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--  231 (355)
T d1nexb2         155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLE--  231 (355)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETT--
T ss_pred             eeeeeccccccccccccceeeeecccceeeeeecccccceeeee-ccccccccccccccceeeecccccceEEeeecc--
Confidence                                               333333333 566677889999999999999999999999995  


Q ss_pred             cccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEeecCC
Q psy6859         215 EFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                                   ++..+..+.+|...|.+++|++  ++|++++.||
T Consensus       232 -------------~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg  263 (355)
T d1nexb2         232 -------------NGELMYTLQGHTALVGLLRLSD--KFLVSAAADG  263 (355)
T ss_dssp             -------------TCCEEEEECCCSSCCCEEEECS--SEEEEECTTS
T ss_pred             -------------cccccccccccccccccccccc--ceeeeeeccc
Confidence                         4677888899999999999875  6899999886

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.2e-26  Score=174.87  Aligned_cols=233  Identities=12%  Similarity=0.024  Sum_probs=170.6

Q ss_pred             CCCCCeEEEEEcC-CCeEEEecCCC--eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccc
Q psy6859           1 MHRSPITHVVVTK-TDFVITASNDG--HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVIN   77 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~   77 (261)
                      +|...|++++|+| ++.|++++.+.  .|++|+.+++   ....+..|...|.+++|+|++++|++++.++.+++|++.+
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~---~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  116 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG---KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET  116 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC---CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC---cEEEeeCCCceEEeeeecccccccceeccccccccccccc
Confidence            5899999999999 88887766553  7999999875   3445677999999999999999999999999999999999


Q ss_pred             cceeeeeeccCcceeEEEEeecCCceeeeee------ecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCce
Q psy6859          78 FDMINMIKLDFTPLTVECIHYLGDAIPTAAV------SDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPT  151 (261)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (261)
                      ++....+..+........++++++.++....      .+..++.+++||+.+++......   +......+.|+|++.. 
T Consensus       117 ~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~---~~~~~~~~~~spdg~~-  192 (360)
T d1k32a3         117 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT---ENSHDYAPAFDADSKN-  192 (360)
T ss_dssp             CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC---SSSBEEEEEECTTSCE-
T ss_pred             cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc---cccccccccccCCCCE-
Confidence            9988888877777788889999988765421      23556789999999886554433   3446788999999986 


Q ss_pred             EEEEecCCCeEEEEEccCCCcc-------ceeec-----------------------------------cCcccCeEEEE
Q psy6859         152 AAVSDQDSSHVHIYDCKGNGTP-------LHVLD-----------------------------------RLHTKPVVLIK  189 (261)
Q Consensus       152 ~~~~~~~d~~i~i~d~~~~~~~-------~~~~~-----------------------------------~~~~~~v~~~~  189 (261)
                       +++++.++.+.+||.. ....       ...+.                                   .........+.
T Consensus       193 -l~~~s~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (360)
T d1k32a3         193 -LYYLSYRSLDPSPDRV-VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII  270 (360)
T ss_dssp             -EEEEESCCCCCEECSS-SSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEE
T ss_pred             -EEEEeCCCceEccccc-ccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEee
Confidence             6777889999999864 2110       00000                                   00111222333


Q ss_pred             EcCCC-------------CEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEE
Q psy6859         190 FNPIY-------------QVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       190 ~~~~~-------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  256 (261)
                      ..+++             .++++++.++.|++||+.+               ++.    ..|.+.|.+++|||||++|++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---------------~~~----~~~~~~v~~~~~SpDG~~l~~  331 (360)
T d1k32a3         271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---------------RKV----TEVKNNLTDLRLSADRKTVMV  331 (360)
T ss_dssp             ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT---------------CCE----EEEEEEEEEEEECTTSCEEEE
T ss_pred             ecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCC---------------CeE----EEecCCcCEEEECCCCCEEEE
Confidence            33322             2345566788899999853               221    234567899999999999999


Q ss_pred             eecCC
Q psy6859         257 ISMDR  261 (261)
Q Consensus       257 ~~~Dg  261 (261)
                      ++.||
T Consensus       332 ~~~Dg  336 (360)
T d1k32a3         332 RKDDG  336 (360)
T ss_dssp             EETTS
T ss_pred             EECCC
Confidence            99986

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.8e-26  Score=168.07  Aligned_cols=204  Identities=12%  Similarity=0.122  Sum_probs=150.6

Q ss_pred             CCCCCeEEEEEcCCCeEEEecCCCeEEEEeccCCce----e-----------------eeEEeeccc--------cceeE
Q psy6859           1 MHRSPITHVVVTKTDFVITASNDGHIKFWKKQEEGI----E-----------------FVKHFRSHL--------GVIHS   51 (261)
Q Consensus         1 gH~~~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~----~-----------------~~~~~~~~~--------~~v~~   51 (261)
                      +|+..|.+++++++..+++++.|+++++|+......    .                 .+..+....        .....
T Consensus        44 ~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (287)
T d1pgua2          44 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG  123 (287)
T ss_dssp             CCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred             CCCCCEEEEEecCCCeEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecccccee
Confidence            699999999999977889999999999998653210    0                 000011010        11223


Q ss_pred             EEEeeCCCEEEEEeCCC-cEEEEEccccceeeeeec-cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE
Q psy6859          52 ICTNYNGTLLCTVASDK-AMKVFDVINFDMINMIKL-DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM  129 (261)
Q Consensus        52 ~~~~~~~~~l~s~~~dg-~v~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  129 (261)
                      .+++++++.+++++.++ .+++|++.+.+....+.. ...+...+.+++++..+++.    +.|+.|++||+.+++.+..
T Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g----~~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG----DVMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE----ETTSCEEEEETTTTEEEEC
T ss_pred             eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccc----cccccccceeecccccccc
Confidence            45677788888887765 799999977665555443 34567788889998877766    8999999999998865443


Q ss_pred             EeecCCcceEEEEEEeCCCC--------ceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc
Q psy6859         130 IKLDFTPLTVECIHYLGDAI--------PTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD  201 (261)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  201 (261)
                      . ...+...+.+++|+|.+.        ..++++|+.|+.|++||++...+.+..+. +|...|++++|+|++ .|++++
T Consensus       200 ~-~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~-~h~~~V~~v~~~~~~-~l~s~g  276 (287)
T d1pgua2         200 R-WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-AHKDGVNNLLWETPS-TLVSSG  276 (287)
T ss_dssp             C-SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-SSTTCEEEEEEEETT-EEEEEE
T ss_pred             c-ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeC-CCCCCeEEEEECCCC-EEEEEE
Confidence            2 223456789999987652        12488999999999999984466677776 899999999999987 588888


Q ss_pred             CCCeEEEeec
Q psy6859         202 KAGILEYWSG  211 (261)
Q Consensus       202 ~dg~i~iwd~  211 (261)
                      .|+.|++|++
T Consensus       277 ~D~~v~iW~i  286 (287)
T d1pgua2         277 ADACIKRWNV  286 (287)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.6e-25  Score=165.89  Aligned_cols=184  Identities=17%  Similarity=0.247  Sum_probs=150.9

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeE
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTV   93 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~   93 (261)
                      ...+++++.|+.|++|+....  ..+..+.+|...+..+  .++++++++++.||.|++||+..++.+..+..+....  
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v--  220 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPETE--TCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--  220 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGGT--EEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE--
T ss_pred             cceeeeecCCCeEEEeecccc--eeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEecccccce--
Confidence            567889999999999999877  7788888887666554  4577899999999999999999999888877665544  


Q ss_pred             EEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec-CCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc
Q psy6859          94 ECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD-FTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT  172 (261)
Q Consensus        94 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  172 (261)
                      ..+.++++.++++    +.|+.|++||+...+....+... .+...+.++.++++.    +++++.||.|++||++ +++
T Consensus       221 ~~~~~~~~~l~s~----s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~s~Dg~i~iwd~~-tg~  291 (342)
T d2ovrb2         221 SGMELKDNILVSG----NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF----VITSSDDGTVKLWDLK-TGE  291 (342)
T ss_dssp             EEEEEETTEEEEE----ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSE----EEEEETTSEEEEEETT-TCC
T ss_pred             eEEecCCCEEEEE----cCCCEEEEEecccccccccccccceeeeceeecccCCCe----eEEEcCCCEEEEEECC-CCC
Confidence            4455666766655    89999999999998877777643 245577888887754    8899999999999999 888


Q ss_pred             cceeec----cCcccCeEEEEEcCCCCEEEEEcCCCe----EEEeecc
Q psy6859         173 PLHVLD----RLHTKPVVLIKFNPIYQVVVSVDKAGI----LEYWSGY  212 (261)
Q Consensus       173 ~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~iwd~~  212 (261)
                      .++.+.    .+|...|++++|+|++.+|++|+.||+    |++||++
T Consensus       292 ~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            887764    256778999999999999999999985    9999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.7e-24  Score=156.06  Aligned_cols=191  Identities=14%  Similarity=0.221  Sum_probs=145.5

Q ss_pred             eeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEE
Q psy6859          38 FVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVH  117 (261)
Q Consensus        38 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~  117 (261)
                      .+.....|...|+|+.  +|+++|++|+.||+|++||+.+++++..+..+..++.  ++.++++.++++    +.|+.|+
T Consensus         7 ~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~--~v~~~~~~l~s~----s~D~~i~   78 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL--CLQYDERVIITG----SSDSTVR   78 (293)
T ss_dssp             CEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE--EEECCSSEEEEE----ETTSCEE
T ss_pred             EEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEe--eeecccceeecc----ccccccc
Confidence            3445566778888865  5788999999999999999999999999987766654  455667766555    8999999


Q ss_pred             EEEcCCCceeeEEee-----------------------------------------cCCcceEEEEEEeCCCCceEEEEe
Q psy6859         118 IYDCKGNDMINMIKL-----------------------------------------DFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus       118 i~d~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                      +|++..+........                                         ..+...+..+.+.+..    ++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~  154 (293)
T d1p22a2          79 VWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY----IVSA  154 (293)
T ss_dssp             EEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTE----EEEE
T ss_pred             ccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccc----cccc
Confidence            999987654333211                                         1122234444544443    6677


Q ss_pred             cCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC
Q psy6859         157 QDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA  236 (261)
Q Consensus       157 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (261)
                      +.|+.+++||++ +++++..+. ++...+..+.++  +.++++++.||.|++||+++               .+.+....
T Consensus       155 s~d~~i~~~d~~-~~~~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~---------------~~~~~~~~  215 (293)
T d1p22a2         155 SGDRTIKVWNTS-TCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC---------------GACLRVLE  215 (293)
T ss_dssp             ETTSEEEEEETT-TCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT---------------CCEEEEEC
T ss_pred             cCCCceeeecCC-CCcEEEEEc-ccccccccccCC--CCeEEEecCCCEEEEEeccc---------------ceeeeeec
Confidence            889999999999 888999997 888888887775  56899999999999999954               56677778


Q ss_pred             CCccceeeeeECCCCceEEEeecCC
Q psy6859         237 KNKTYPSGLSFSPDGNKFVTISMDR  261 (261)
Q Consensus       237 ~~~~~v~~~~~s~~~~~l~s~~~Dg  261 (261)
                      +|...+..  +++++.+|++++.||
T Consensus       216 ~~~~~v~~--~~~~~~~l~sg~~dg  238 (293)
T d1p22a2         216 GHEELVRC--IRFDNKRIVSGAYDG  238 (293)
T ss_dssp             CCSSCEEE--EECCSSEEEEEETTS
T ss_pred             ccceeeee--ccccceEEEEEcCCC
Confidence            88887764  566788999999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.3e-24  Score=164.94  Aligned_cols=192  Identities=8%  Similarity=-0.020  Sum_probs=151.9

Q ss_pred             EEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC--cEEEEEccccceeee
Q psy6859           8 HVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK--AMKVFDVINFDMINM   83 (261)
Q Consensus         8 ~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~v~~wd~~~~~~~~~   83 (261)
                      .-.|||  |+++|+++ +|.|.+|+.+++  ...+ + +|...|.+++|+|||++|++++.+.  .|++||..+++..+ 
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~--~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-   80 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGT--YVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-   80 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSS--BEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCC--cEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-
Confidence            457998  67777766 589999999876  4333 3 5899999999999999998877553  79999998776554 


Q ss_pred             eeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE--------E
Q psy6859          84 IKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV--------S  155 (261)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  155 (261)
                      +..+...+..+.++++++.+++.    +.++.+.+|++.+++....+..+  ...+.+++|+|++.++++.        .
T Consensus        81 ~~~~~~~v~~~~~spdg~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~la~~~~~~~~~~~  154 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGKFAVVA----NDRFEIMTVDLETGKPTVIERSR--EAMITDFTISDNSRFIAYGFPLKHGETD  154 (360)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEE----ETTSEEEEEETTTCCEEEEEECS--SSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred             eeCCCceEEeeeeccccccccee----ccccccccccccccceeeeeecc--cccccchhhccceeeeeeecccccccee
Confidence            44566667888999999988877    89999999999999887776653  4467789999999863322        2


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      +..++.+++||+. +++.....  .+...+..++|+|+|++|++++.++.+.+||....
T Consensus       155 ~~~~~~~~v~d~~-~~~~~~~~--~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         155 GYVMQAIHVYDME-GRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             SCCEEEEEEEETT-TTEEEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             eccccceeeeccc-cCceeeec--ccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            3446679999998 66655544  57788899999999999999999999999997543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=3e-23  Score=161.35  Aligned_cols=243  Identities=9%  Similarity=0.074  Sum_probs=157.4

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe---eccccceeEEEEeeCCCEEEEE-eCCCcEEEEEcccc
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF---RSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINF   78 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~   78 (261)
                      ..+..++|+| |+++++++.|++|++||+.+........+   .+|.+.+.+++|+|||++++++ ..++.+++||..++
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence            4689999999 99999999999999999988643443333   3566777888889999987555 57899999999887


Q ss_pred             ceeeeeeccCc-----------cee--------------------------------------------EEEEeecCCce
Q psy6859          79 DMINMIKLDFT-----------PLT--------------------------------------------VECIHYLGDAI  103 (261)
Q Consensus        79 ~~~~~~~~~~~-----------~~~--------------------------------------------~~~~~~~~~~~  103 (261)
                      +....+..+..           ...                                            ...+.++++++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  221 (426)
T d1hzua2         142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYF  221 (426)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEE
T ss_pred             ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEE
Confidence            65544321110           000                                            11112222222


Q ss_pred             eeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC-ceEEEEecCCCeEEEEEccCC------Ccccee
Q psy6859         104 PTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI-PTAAVSDQDSSHVHIYDCKGN------GTPLHV  176 (261)
Q Consensus       104 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~------~~~~~~  176 (261)
                      +.   +...+..+.+++..+++.+........+.......+..... ....+..+.++.+.+|+....      .+....
T Consensus       222 ~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~  298 (426)
T d1hzua2         222 MT---AANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  298 (426)
T ss_dssp             EE---EETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEE
T ss_pred             Ee---eeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEE
Confidence            11   12456677788888887777666544433333344333322 223445566889999987621      256677


Q ss_pred             eccCcccCeEEEEEcCCCCEEEE-------EcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECC
Q psy6859         177 LDRLHTKPVVLIKFNPIYQVVVS-------VDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP  249 (261)
Q Consensus       177 ~~~~~~~~v~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  249 (261)
                      ++ +|...+..++|+|++++|++       ++.+++|++||+.+.+..... .    . ......+..|...|..++|||
T Consensus       299 l~-g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~-~----~-~~~~~~~~~~~~rv~~~~fSp  371 (426)
T d1hzua2         299 LQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV-L----P-IAEWADLGEGAKRVVQPEYNK  371 (426)
T ss_dssp             EE-CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE-E----C-HHHHHCCCSSCCCEEEEEECS
T ss_pred             Ee-cCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE-e----c-cchhcccCCCCccEEEEEECC
Confidence            77 89999999999999999984       556889999999653210000 0    0 000112334667799999999


Q ss_pred             CCceEEE
Q psy6859         250 DGNKFVT  256 (261)
Q Consensus       250 ~~~~l~s  256 (261)
                      ||++|+.
T Consensus       372 DGk~i~v  378 (426)
T d1hzua2         372 RGDEVWF  378 (426)
T ss_dssp             SSSEEEE
T ss_pred             CCCEEEE
Confidence            9997754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=7.5e-21  Score=140.54  Aligned_cols=228  Identities=12%  Similarity=0.150  Sum_probs=172.4

Q ss_pred             CCeEEEEEcC-CCeE-EEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEE-EeCCCcEEEEEccccce
Q psy6859           4 SPITHVVVTK-TDFV-ITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCT-VASDKAMKVFDVINFDM   80 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~v~~wd~~~~~~   80 (261)
                      ..+..++|+| +++| ++++.++.|++||+.+.  +.+..+..+. .+..+.|++++++++. +..++.+.+|+..+++.
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV  108 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC--ceeeeeeccc-cccccccccccccccccccccceeeeccccccee
Confidence            4568899999 8866 57788999999999987  7788887665 4588999999886655 45677899999999988


Q ss_pred             eeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859          81 INMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                      ...+..... .....+.+++..++..   +..++.+.+|+..+...+..+....   ....+.++|++... +++...++
T Consensus       109 ~~~~~~~~~-~~~~~~~~dg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~  180 (301)
T d1l0qa2         109 AGTVKTGKS-PLGLALSPDGKKLYVT---NNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKV-YVANFDSM  180 (301)
T ss_dssp             EEEEECSSS-EEEEEECTTSSEEEEE---ETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEE-EEEETTTT
T ss_pred             eeecccccc-ceEEEeecCCCeeeee---eccccceeeeeccccceeeecccCC---CceEEEeeccccce-eeeccccc
Confidence            888775544 4566777888765443   4778999999999998888777543   45788999998863 45555667


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc---CCCeEEEeecccccccCCeeeeeecccccceeecCC
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD---KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAK  237 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (261)
                      .+.+|+.. ..+....+.  ....+..++++++++.++.+.   .++.|++||+.+               ++.+..+..
T Consensus       181 ~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t---------------~~~~~~~~~  242 (301)
T d1l0qa2         181 SISVIDTV-TNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---------------NKITARIPV  242 (301)
T ss_dssp             EEEEEETT-TTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---------------TEEEEEEEC
T ss_pred             cccccccc-ceeeeeccc--ccCCcceeeccccccccccccccceeeeeeeeecCC---------------CeEEEEEcC
Confidence            88888887 666666664  456678899999999776543   457899999854               455555543


Q ss_pred             CccceeeeeECCCCceE-EEeecCC
Q psy6859         238 NKTYPSGLSFSPDGNKF-VTISMDR  261 (261)
Q Consensus       238 ~~~~v~~~~~s~~~~~l-~s~~~Dg  261 (261)
                       ...+.+++|+|||++| ++++.|+
T Consensus       243 -~~~~~~va~spdg~~l~va~~~~~  266 (301)
T d1l0qa2         243 -GPDPAGIAVTPDGKKVYVALSFCN  266 (301)
T ss_dssp             -CSSEEEEEECTTSSEEEEEETTTT
T ss_pred             -CCCEEEEEEeCCCCEEEEEECCCC
Confidence             3467899999999987 4655554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1e-21  Score=147.39  Aligned_cols=219  Identities=13%  Similarity=0.117  Sum_probs=157.6

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeecc--ccceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeeeeccCcc-
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSH--LGVIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMINMIKLDFTP-   90 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~~~~~~~~~-   90 (261)
                      +++++++.|++|.+||+++.  +.+..+..+  ...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+... 
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~--~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCC--eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            58999999999999999987  777777543  35578999999999874 5678999999999999988877654322 


Q ss_pred             ----eeEEEEeecCCceeeeeee--------cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          91 ----LTVECIHYLGDAIPTAAVS--------DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        91 ----~~~~~~~~~~~~~~~~~~s--------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                          ...+.++++++.++.....        ...+..+.+||..+++.+..+....   .+..+.++|++.+  +++++ 
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~--l~~~~-  153 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSK--LYGLG-  153 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSC--EEEES-
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCE--EEEEc-
Confidence                2345677777776654221        1357889999999998888877543   4567899999987  55554 


Q ss_pred             CCeEEEEEccCCCccceeec------------------------------------------------------------
Q psy6859         159 SSHVHIYDCKGNGTPLHVLD------------------------------------------------------------  178 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~------------------------------------------------------------  178 (261)
                       +.+.+||.. +++....+.                                                            
T Consensus       154 -~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (337)
T d1pbyb_         154 -RDLHVMDPE-AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             -SSEEEEETT-TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             -CCcceeeee-cCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE
Confidence             346677765 432222211                                                            


Q ss_pred             -----cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCce
Q psy6859         179 -----RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNK  253 (261)
Q Consensus       179 -----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  253 (261)
                           ..+...+..+.++|++.+++.+  ++.|++||+.+               ++.+..+. +...+.+++|+|||++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~---------------~~~~~~~~-~~~~~~~~~~s~dG~~  293 (337)
T d1pbyb_         232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK---------------NASIKRVP-LPHSYYSVNVSTDGST  293 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT---------------TEEEEEEE-CSSCCCEEEECTTSCE
T ss_pred             EEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCC---------------CcEEEEEc-CCCCEEEEEECCCCCE
Confidence                 0122334556677777777665  57899999954               55555554 4567899999999999


Q ss_pred             EEEeecCC
Q psy6859         254 FVTISMDR  261 (261)
Q Consensus       254 l~s~~~Dg  261 (261)
                      |++++.||
T Consensus       294 l~v~~~~~  301 (337)
T d1pbyb_         294 VWLGGALG  301 (337)
T ss_dssp             EEEESBSS
T ss_pred             EEEEeCCC
Confidence            99998875

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=5.4e-22  Score=154.21  Aligned_cols=232  Identities=10%  Similarity=0.074  Sum_probs=161.3

Q ss_pred             eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee--eccCcce--
Q psy6859          16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI--KLDFTPL--   91 (261)
Q Consensus        16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~--~~~~~~~--   91 (261)
                      ++++.+.||+|+|||+.+.  +.+.++..|. .+..++|+|||+++++++.|+++++||+.+++.....  .....+.  
T Consensus        34 ~~V~~~~dg~v~vwD~~t~--~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSK--KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             EEEEETTTTEEEEEETTTC--SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCC--cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence            5688899999999999987  7888888774 5899999999999999999999999999988754433  3222221  


Q ss_pred             -eEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC---------CcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          92 -TVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF---------TPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        92 -~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                       ....++++++.+++.   +..++.+.+||..+++++..+..+.         .......+..++++.. ++++....+.
T Consensus       111 ~~s~~~spDG~~l~v~---~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~-~~~~~~~~~~  186 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAG---AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE-FIVNVKETGK  186 (426)
T ss_dssp             EECCSTTCTTTEEEEE---EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE-EEEEETTTTE
T ss_pred             EEeeeecCCCCEEEEe---ecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCE-EEEecCCCCe
Confidence             122334678766544   3578999999999998877665432         1123455666777764 3444455667


Q ss_pred             EEEEEccCCCccce-eeccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccC-------C---ee--------
Q psy6859         162 VHIYDCKGNGTPLH-VLDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKF-------P---KC--------  221 (261)
Q Consensus       162 i~i~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-------~---~~--------  221 (261)
                      +.+++.. ....+. ... .+...+..+.|+|++++++++. .+..+.+++..+++...       +   ..        
T Consensus       187 i~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (426)
T d1hzua2         187 VLLVNYK-DIDNLTVTSI-GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY  264 (426)
T ss_dssp             EEEEECS-SSSSCEEEEE-ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT
T ss_pred             EEEEEec-cccceeeEEe-ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCC
Confidence            7777766 433222 222 5778899999999999876654 66678888877653211       0   00        


Q ss_pred             --------------ee-------eecccccceeecCCCccceeeeeECCCCceEEE
Q psy6859         222 --------------VH-------FESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVT  256 (261)
Q Consensus       222 --------------~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  256 (261)
                                    ..       +.....+....+.+|...+..++|+||+++|++
T Consensus       265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v  320 (426)
T d1hzua2         265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV  320 (426)
T ss_dssp             EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEE
T ss_pred             CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEE
Confidence                          00       001223556678889999999999999999995

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=9.5e-22  Score=152.83  Aligned_cols=249  Identities=7%  Similarity=0.003  Sum_probs=162.7

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe---eccccceeEEEEeeCCCEE-EEEeCCCcEEEEEcccc
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF---RSHLGVIHSICTNYNGTLL-CTVASDKAMKVFDVINF   78 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l-~s~~~dg~v~~wd~~~~   78 (261)
                      ..+..++|+| |+++++++.|+++++||+.+...+....+   .+|.+.+.+..|+|||++| ++++.++++++||..++
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~  141 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  141 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc
Confidence            3689999999 99999999999999999987643334333   3566677777888999986 67778999999999999


Q ss_pred             ceeeeeeccC-----------cceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC
Q psy6859          79 DMINMIKLDF-----------TPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        79 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                      +.+..+..+.           .....+.+++++..++.   +...++.|.+||..+.+......... ......+.++|+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~v---s~~~~~~i~~~d~~~~~~~~~~~i~~-g~~~~~~~~spd  217 (432)
T d1qksa2         142 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV---NVKETGKILLVDYTDLNNLKTTEISA-ERFLHDGGLDGS  217 (432)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE---EETTTTEEEEEETTCSSEEEEEEEEC-CSSEEEEEECTT
T ss_pred             cceeeeccCCccccceeccCCCceeEEEECCCCCEEEE---EEccCCeEEEEEccCCCcceEEEEcc-cCccccceECCC
Confidence            8887765322           11223445555554332   23778999999998877655444332 235688999999


Q ss_pred             CCceEEEEecCCCeEEEEEccCCCccceeecc-------------------------------------------CcccC
Q psy6859         148 AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDR-------------------------------------------LHTKP  184 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------------------------------~~~~~  184 (261)
                      +.++ +++...++.+.++|.. ..+.+..+..                                           .|...
T Consensus       218 g~~~-~va~~~~~~v~v~d~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~  295 (432)
T d1qksa2         218 HRYF-ITAANARNKLVVIDTK-EGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWK  295 (432)
T ss_dssp             SCEE-EEEEGGGTEEEEEETT-TTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred             CCEE-EEeccccceEEEeecc-cceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccE
Confidence            9864 4555567788898886 4433322210                                           11223


Q ss_pred             eEEEEEcCCCCEEEEEcCCCeEEEeecccccccCC---eeeeeeccc------ccce--------eecCCCccceeeeeE
Q psy6859         185 VVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFP---KCVHFESKL------DTDL--------FEFAKNKTYPSGLSF  247 (261)
Q Consensus       185 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~------~~~~--------~~~~~~~~~v~~~~~  247 (261)
                      +....++|++..+++++.+...++|+.........   .....+.+.      .+.+        ..+..|...|..++|
T Consensus       296 v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~f  375 (432)
T d1qksa2         296 ILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEF  375 (432)
T ss_dssp             EEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEE
T ss_pred             EEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEE
Confidence            55566777777777777777788886543211000   000011110      0111        123356778999999


Q ss_pred             CCCCceEEEee
Q psy6859         248 SPDGNKFVTIS  258 (261)
Q Consensus       248 s~~~~~l~s~~  258 (261)
                      ||||++|+.+.
T Consensus       376 S~DG~~v~~S~  386 (432)
T d1qksa2         376 NKDGTEVWFSV  386 (432)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            99999887664

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=3.9e-22  Score=150.24  Aligned_cols=233  Identities=9%  Similarity=-0.065  Sum_probs=149.5

Q ss_pred             EEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeeee
Q psy6859           9 VVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMINMIK   85 (261)
Q Consensus         9 ~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~~~~   85 (261)
                      ++|++ ++++++++.|++|.+||+.+.  +.+.+++ .|...+.+++|+|||++++ ++..++.|.+||+.+++.+..+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~--~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC--CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            46888 899999999999999999988  7788776 3556678999999999874 55678999999999998887766


Q ss_pred             ccCcc------eeEEEEeecCCceeeeeee--------cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCC--
Q psy6859          86 LDFTP------LTVECIHYLGDAIPTAAVS--------DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAI--  149 (261)
Q Consensus        86 ~~~~~------~~~~~~~~~~~~~~~~~~s--------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  149 (261)
                      .....      ...+.++++++.++.....        ...+..+.+||..+++....+.....+..+..+.+.+++.  
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            43321      2345667777666544111        1246667777766554333222211111112222222221  


Q ss_pred             ------------------------------------ce------------------------EEEEecCCCeEEEEEccC
Q psy6859         150 ------------------------------------PT------------------------AAVSDQDSSHVHIYDCKG  169 (261)
Q Consensus       150 ------------------------------------~~------------------------~~~~~~~d~~i~i~d~~~  169 (261)
                                                          ..                        .+.++..+..+.+||+. 
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  238 (346)
T d1jmxb_         160 VAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK-  238 (346)
T ss_dssp             EESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT-
T ss_pred             EeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC-
Confidence                                                10                        01112223345555555 


Q ss_pred             CCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECC
Q psy6859         170 NGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP  249 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  249 (261)
                      ++.........+...+..+.+++++.+++... ++.|.+||+.+               ++.+..+. +...+.+++|||
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~---------------~~~~~~~~-~~~~~~~va~s~  301 (346)
T d1jmxb_         239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ---------------RKLIKAAN-LDHTYYCVAFDK  301 (346)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT---------------TEEEEEEE-CSSCCCEEEECS
T ss_pred             CCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCC---------------CcEEEEEc-CCCCEEEEEEcC
Confidence            33332222115666778888888888877766 45799999854               55555554 345789999999


Q ss_pred             CCceEEEeecCC
Q psy6859         250 DGNKFVTISMDR  261 (261)
Q Consensus       250 ~~~~l~s~~~Dg  261 (261)
                      ||++|++++.||
T Consensus       302 DG~~l~v~~~d~  313 (346)
T d1jmxb_         302 KGDKLYLGGTFN  313 (346)
T ss_dssp             SSSCEEEESBSS
T ss_pred             CCCEEEEEeCCC
Confidence            999999999875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=6.3e-20  Score=135.48  Aligned_cols=214  Identities=13%  Similarity=0.147  Sum_probs=163.5

Q ss_pred             EEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEccccceeeeeeccCcceeEEE
Q psy6859          17 VITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMINMIKLDFTPLTVEC   95 (261)
Q Consensus        17 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~   95 (261)
                      +++++.|++|.+||++++  +.+.++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..+..+ ..+.
T Consensus         5 yV~~~~~~~v~v~D~~t~--~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~-~~~~   80 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSN--KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP-QGVA   80 (301)
T ss_dssp             EEEETTTTEEEEEETTTT--EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE-EEEE
T ss_pred             EEEECCCCEEEEEECCCC--eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccc-cccc
Confidence            457789999999999988  777777744 4568999999999874 6668899999999999999988866654 4556


Q ss_pred             EeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccce
Q psy6859          96 IHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLH  175 (261)
Q Consensus        96 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  175 (261)
                      +.+++..++..   +..++.+.+|+..+++....+....   ...++.++|++.. +++++..++.+.+|+.. +...+.
T Consensus        81 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~-~~~~~~  152 (301)
T d1l0qa2          81 VSPDGKQVYVT---NMASSTLSVIDTTSNTVAGTVKTGK---SPLGLALSPDGKK-LYVTNNGDKTVSVINTV-TKAVIN  152 (301)
T ss_dssp             ECTTSSEEEEE---ETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSE-EEEEETTTTEEEEEETT-TTEEEE
T ss_pred             ccccccccccc---ccccceeeecccccceeeeeccccc---cceEEEeecCCCe-eeeeeccccceeeeecc-ccceee
Confidence            66777655433   4778999999999998888877543   4578999999985 45677778999999998 888888


Q ss_pred             eeccCcccCeEEEEEcCCCCEEEEEcC-CCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceE
Q psy6859         176 VLDRLHTKPVVLIKFNPIYQVVVSVDK-AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKF  254 (261)
Q Consensus       176 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  254 (261)
                      .+.  +...+..+.++|+++.++++.. ++.+.+|+...               .+...... ....+..++|+++++.+
T Consensus       153 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~~g~~~  214 (301)
T d1l0qa2         153 TVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---------------NSVIDTVK-VEAAPSGIAVNPEGTKA  214 (301)
T ss_dssp             EEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---------------TEEEEEEE-CSSEEEEEEECTTSSEE
T ss_pred             ecc--cCCCceEEEeeccccceeeecccccccccccccc---------------eeeeeccc-ccCCcceeecccccccc
Confidence            874  5566889999999998876664 46677777632               23333333 33456789999999988


Q ss_pred             EEeecC
Q psy6859         255 VTISMD  260 (261)
Q Consensus       255 ~s~~~D  260 (261)
                      +.++.|
T Consensus       215 ~v~~~~  220 (301)
T d1l0qa2         215 YVTNVD  220 (301)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            766543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1e-20  Score=146.90  Aligned_cols=237  Identities=10%  Similarity=0.022  Sum_probs=165.4

Q ss_pred             eEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce--eeeeeccCcceeE
Q psy6859          16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM--INMIKLDFTPLTV   93 (261)
Q Consensus        16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~~~~   93 (261)
                      ++++.+.||+|.|||.++.  +.+..+..+ ..+..++|+|||+++++++.|+++++||+.+++.  ...++....+...
T Consensus        34 ~~v~~~d~g~v~v~D~~t~--~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTY--EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             EEEEETTTTEEEEEETTTC--CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCC--cEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            3689999999999999988  888888877 4689999999999999999999999999988764  3344432222222


Q ss_pred             E---EEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC---------CcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          94 E---CIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF---------TPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        94 ~---~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      .   .++++++.+++.   ++.++.|++||..+++++..+..+.         .......+.++|++.. ++++...++.
T Consensus       111 ~~s~~~SpDG~~l~vs---~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~-~~vs~~~~~~  186 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAG---AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE-FIVNVKETGK  186 (432)
T ss_dssp             EECCSTTCTTTEEEEE---EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE-EEEEETTTTE
T ss_pred             EEecccCCCCCEEEEE---cCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE-EEEEEccCCe
Confidence            1   235678776443   3679999999999999887765421         2235567889999875 4677788999


Q ss_pred             EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCC-----------eeee------
Q psy6859         162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFP-----------KCVH------  223 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-----------~~~~------  223 (261)
                      |.+||.. +.+........+...+..++|+|+|+++++++ .++.+.++|..+++....           ....      
T Consensus       187 i~~~d~~-~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  265 (432)
T d1qksa2         187 ILLVDYT-DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF  265 (432)
T ss_dssp             EEEEETT-CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTT
T ss_pred             EEEEEcc-CCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCC
Confidence            9999987 65543322214566789999999999876665 566788888875432110           0000      


Q ss_pred             ----eeccccc-ce-------eecCCCccceeeeeECCCCceEEEeecC
Q psy6859         224 ----FESKLDT-DL-------FEFAKNKTYPSGLSFSPDGNKFVTISMD  260 (261)
Q Consensus       224 ----~~~~~~~-~~-------~~~~~~~~~v~~~~~s~~~~~l~s~~~D  260 (261)
                          .....+. .+       .....|...+....++|++..+++++.|
T Consensus       266 g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p  314 (432)
T d1qksa2         266 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP  314 (432)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred             CceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecC
Confidence                0001111 11       1122355678888999999999888866

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.7e-20  Score=140.65  Aligned_cols=194  Identities=8%  Similarity=0.031  Sum_probs=141.7

Q ss_pred             CCeEEEEEcC-CCeE-EEecCCCeEEEEeccCCceeeeEEeeccc-----cceeEEEEeeCCCEEEEEe-----------
Q psy6859           4 SPITHVVVTK-TDFV-ITASNDGHIKFWKKQEEGIEFVKHFRSHL-----GVIHSICTNYNGTLLCTVA-----------   65 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~~-----------   65 (261)
                      ..+.+++|+| ++++ ++++.++.|.+||+.++  +.+..+..+.     ..+..++|+|++++++++.           
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCC--cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence            4577899999 7876 57788999999999987  6666665442     3457899999999998876           


Q ss_pred             -CCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec-----------
Q psy6859          66 -SDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD-----------  133 (261)
Q Consensus        66 -~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~-----------  133 (261)
                       .+..+.+||..+++....+..... ...+.+++++..++..    +  +.+.+||..+++....+...           
T Consensus       112 ~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~----~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  184 (337)
T d1pbyb_         112 VQPTRVALYDAETLSRRKAFEAPRQ-ITMLAWARDGSKLYGL----G--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPD  184 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSS-CCCEEECTTSSCEEEE----S--SSEEEEETTTTEEEEEECSTTTTTTTBCCCB
T ss_pred             ccccceeeccccCCeEEEeccccCC-ceEEEEcCCCCEEEEE----c--CCcceeeeecCcEEEEeecCCccccceecCC
Confidence             356789999999988888775544 4456778888777664    2  34566776655443332110           


Q ss_pred             -----------------------------------------------------CCcceEEEEEEeCCCCceEEEEecCCC
Q psy6859         134 -----------------------------------------------------FTPLTVECIHYLGDAIPTAAVSDQDSS  160 (261)
Q Consensus       134 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~  160 (261)
                                                                           ........+.++|++..  ++.+  ++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~  260 (337)
T d1pbyb_         185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR--AFGA--YN  260 (337)
T ss_dssp             CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSE--EEEE--ES
T ss_pred             cceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceE--EEEc--cc
Confidence                                                                 01123344555566653  2222  68


Q ss_pred             eEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         161 HVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       161 ~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .|++||+. +++.+..+.  +...+.+++|+|||++|++++.|+.|++||+++
T Consensus       261 ~i~v~d~~-~~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         261 VLESFDLE-KNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EEEEEETT-TTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             cEEEEECC-CCcEEEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            89999999 899888884  667789999999999999999999999999954

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3.9e-19  Score=133.08  Aligned_cols=191  Identities=10%  Similarity=0.114  Sum_probs=122.6

Q ss_pred             eEEEecCCCeEEEEeccCCc-eeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEccccceeeeee---ccCcc
Q psy6859          16 FVITASNDGHIKFWKKQEEG-IEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVINFDMINMIK---LDFTP   90 (261)
Q Consensus        16 ~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~~~~~~~~~---~~~~~   90 (261)
                      .+++++.|++|++|+++..+ .+.++.+ .|.+.+..|+|+|||++|++++ .|+.|++|++........+.   .....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            46788899999999997643 2444444 4778999999999999986555 58999999997654332221   12222


Q ss_pred             eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCC
Q psy6859          91 LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN  170 (261)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  170 (261)
                      ...+.++++++.+++.   ...++.+.+|+...............+..+.++.++|++.+. +.....+..+.+|+....
T Consensus        85 p~~l~~spDg~~l~v~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~-~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVG---SYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL-WVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             CSEEEECTTSSEEEEE---ETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE-EEEEGGGTEEEEEEECTT
T ss_pred             ceEEEEcCCCCEEeec---ccCCCceeeeccccccceecccccCCCccceEEEeeecceee-eccccccceeeEEEeccC
Confidence            4457889999877665   346889999998877666665554455566788889998863 444445677888887622


Q ss_pred             Cccceee----ccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeec
Q psy6859         171 GTPLHVL----DRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSG  211 (261)
Q Consensus       171 ~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~  211 (261)
                      .......    ..........++|++++.+++.. ...+...+|+.
T Consensus       161 ~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         161 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             CcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEee
Confidence            2111110    01223344566666666655333 34444455543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.85  E-value=2.7e-18  Score=130.67  Aligned_cols=225  Identities=12%  Similarity=-0.014  Sum_probs=149.9

Q ss_pred             CCCCCeEEEEEcC-CCeEEEe-----cCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe---------
Q psy6859           1 MHRSPITHVVVTK-TDFVITA-----SNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA---------   65 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~-----~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---------   65 (261)
                      +|..++..++++| ++.++..     +.++.+.+||..++  +.+.++..+..  ..++|+|||++|++++         
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--SILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC--CEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCccccc
Confidence            4678899999999 8776653     34467889998887  77777776544  3799999999999875         


Q ss_pred             -CCCcEEEEEccccceeeeeeccCcce-------eEEE----------------------------------------Ee
Q psy6859          66 -SDKAMKVFDVINFDMINMIKLDFTPL-------TVEC----------------------------------------IH   97 (261)
Q Consensus        66 -~dg~v~~wd~~~~~~~~~~~~~~~~~-------~~~~----------------------------------------~~   97 (261)
                       .++.|.+||..+++.+..+..+....       ....                                        ++
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  173 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIH  173 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEe
Confidence             45789999999988766543222111       0111                                        12


Q ss_pred             ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC-------------------------------------------
Q psy6859          98 YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF-------------------------------------------  134 (261)
Q Consensus        98 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~-------------------------------------------  134 (261)
                      ++++..+   ++.+.|+.+.+|+...++.........                                           
T Consensus       174 ~~g~~~~---v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  250 (373)
T d2madh_         174 PGAPSTF---YLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA  250 (373)
T ss_pred             cCCCcEE---EEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEE
Confidence            2222221   224678888888877654333221000                                           


Q ss_pred             --------------CcceEEEEEEeCCCCceE--------EEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcC
Q psy6859         135 --------------TPLTVECIHYLGDAIPTA--------AVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNP  192 (261)
Q Consensus       135 --------------~~~~~~~~~~~~~~~~~~--------~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~  192 (261)
                                    .+.....+.+++++...+        ++....++.+.+||.. +++.+..+  .+...+..++|+|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-t~~~~~~~--~~~~~~~~~a~sp  327 (373)
T d2madh_         251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL-VGQTSSQI--SLGHDVDAISVAQ  327 (373)
T ss_pred             eeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECC-CCcEEEEe--cCCCCeeEEEECC
Confidence                          000111233344443221        2344557789999998 88888888  4777899999999


Q ss_pred             CCCE--EEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCC
Q psy6859         193 IYQV--VVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPD  250 (261)
Q Consensus       193 ~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  250 (261)
                      ||+.  +++++.|+.|++||+.               +++.+..+..+....+.+++.++
T Consensus       328 DG~~~l~vt~~~d~~v~v~D~~---------------tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         328 DGGPDLYALSAGTEVLHIYDAG---------------AGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCEEEEEEeCCCCeEEEEECC---------------CCCEEEEECCCCCCCcEEEEecC
Confidence            9984  4688899999999994               47888899888777888877654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=2.4e-18  Score=129.26  Aligned_cols=202  Identities=8%  Similarity=-0.071  Sum_probs=130.3

Q ss_pred             CCCCeEEEEEcC-CCeE-EEecCCCeEEEEeccCCceeeeEEeecc------ccceeEEEEeeCCCEEEEEe--------
Q psy6859           2 HRSPITHVVVTK-TDFV-ITASNDGHIKFWKKQEEGIEFVKHFRSH------LGVIHSICTNYNGTLLCTVA--------   65 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~--------   65 (261)
                      |...+.+++|+| ++++ +++..++.|.+||+.+.  +.+..+...      ...+..++|+|||+++++++        
T Consensus        38 ~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~--~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~  115 (346)
T d1jmxb_          38 DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND  115 (346)
T ss_dssp             SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSS
T ss_pred             CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC--eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceee
Confidence            445678999999 7765 66778999999999987  555554422      23467899999999988765        


Q ss_pred             ----CCCcEEEEEccccceeeeeeccCc--ceeEEEEeecCCceeee---------------------------e-----
Q psy6859          66 ----SDKAMKVFDVINFDMINMIKLDFT--PLTVECIHYLGDAIPTA---------------------------A-----  107 (261)
Q Consensus        66 ----~dg~v~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------------------~-----  107 (261)
                          .++.+.+|+..+++....+.....  ........+++ .++..                           .     
T Consensus       116 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (346)
T d1jmxb_         116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDV  194 (346)
T ss_dssp             CEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS-CEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBC
T ss_pred             eeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC-EEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccc
Confidence                467889999888765544332111  11111111111 11110                           0     


Q ss_pred             -----------------------------eecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859         108 -----------------------------VSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus       108 -----------------------------~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                                                   .++..+..+.+||+.++......... ....+....+++++.+  ++... 
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~-  270 (346)
T d1jmxb_         195 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKDPN--QIYGV-  270 (346)
T ss_dssp             CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-CSSCEEEEEECSSCTT--EEEEE-
T ss_pred             cEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeec-ccceeEEEEEeCCCCE--EEEec-
Confidence                                         00011223444555554433332221 2335566777777765  33333 


Q ss_pred             CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         159 SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ++.|.+||.. +++.+..+.  +...+.+++|+|||++|++++.|+.|++||+++
T Consensus       271 ~~~v~v~d~~-~~~~~~~~~--~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         271 LNRLAKYDLK-QRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             ESEEEEEETT-TTEEEEEEE--CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             CCeEEEEECC-CCcEEEEEc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence            5689999998 888888885  556799999999999999999999999999954

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=5.4e-18  Score=128.00  Aligned_cols=223  Identities=13%  Similarity=0.097  Sum_probs=138.1

Q ss_pred             CeEEEEEcC-CCeEEEe-----cCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe----------CCC
Q psy6859           5 PITHVVVTK-TDFVITA-----SNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA----------SDK   68 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~-----~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~dg   68 (261)
                      ++.-.+.+| ++.++..     ..++.|.+||..++  +.+.++..+.  ...++|+|||++|++++          .|+
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg--~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--RVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--EEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCC--cEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence            444456678 7766553     35668999999987  7777776554  44799999999887653          478


Q ss_pred             cEEEEEccccceeeeeeccCcc-------eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC-------
Q psy6859          69 AMKVFDVINFDMINMIKLDFTP-------LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF-------  134 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~-------  134 (261)
                      .|++||+.+++.+..+..+...       ...+.++++++.++..  ..+.+..+.+|+..+++.+..+....       
T Consensus        79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d2bbkh_          79 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY--QFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT  156 (355)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEE--ECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEe--cCCCCceeeeeecCCCcEeeEEecCCcceEeec
Confidence            9999999998887766432211       1223455555544332  22334455555555444333221100       


Q ss_pred             --------------------------------------------------------------------------------
Q psy6859         135 --------------------------------------------------------------------------------  134 (261)
Q Consensus       135 --------------------------------------------------------------------------------  134 (261)
                                                                                                      
T Consensus       157 ~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  236 (355)
T d2bbkh_         157 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA  236 (355)
T ss_dssp             ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEES
T ss_pred             CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCC
Confidence                                                                                            


Q ss_pred             ----------CcceEEEEEEeCCCCceEEEEec--------CCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCC-
Q psy6859         135 ----------TPLTVECIHYLGDAIPTAAVSDQ--------DSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQ-  195 (261)
Q Consensus       135 ----------~~~~~~~~~~~~~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  195 (261)
                                .+.....+++++++...++....        ....|.+||.. +++.+..+.  +...+.+++|+|||+ 
T Consensus       237 ~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~-t~~~~~~~~--~~~~~~~~a~spDG~~  313 (355)
T d2bbkh_         237 LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK-TGERLAKFE--MGHEIDSINVSQDEKP  313 (355)
T ss_dssp             SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEE--EEEEECEEEECCSSSC
T ss_pred             cccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC-CCcEEEEec--CCCCEEEEEEcCCCCe
Confidence                      00011124444444432221111        12357788877 777777774  556688999999998 


Q ss_pred             -EEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCC
Q psy6859         196 -VVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDG  251 (261)
Q Consensus       196 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  251 (261)
                       +++++..|+.|.+||++               +++.++++.++......+.+.++|
T Consensus       314 ~l~v~~~~d~~i~v~D~~---------------tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         314 LLYALSTGDKTLYIHDAE---------------SGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEEEETTTTEEEEEETT---------------TCCEEEEECCCCSSCCEEECCCCC
T ss_pred             EEEEEECCCCEEEEEECC---------------CCCEEEEEeCcCCCccEEEeCCCC
Confidence             45677889999999994               477888888776666666665543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4.3e-16  Score=116.27  Aligned_cols=207  Identities=8%  Similarity=0.082  Sum_probs=125.1

Q ss_pred             CCCCeEEEEEcC-CCeE-EEecCCCeEEEEeccCCceeee-EEeeccccceeEEEEeeCCCEEEEEeC-CCcEEEEEccc
Q psy6859           2 HRSPITHVVVTK-TDFV-ITASNDGHIKFWKKQEEGIEFV-KHFRSHLGVIHSICTNYNGTLLCTVAS-DKAMKVFDVIN   77 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~~   77 (261)
                      |.+.|..|+|+| +++| +++..|+.|++|++........ .....+...+..++|+|||++|++++. ++.+.+|+...
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccc
Confidence            667899999999 8877 4556689999999976432221 112224456788999999999998875 67899998876


Q ss_pred             cceeeeee--ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee---------------------------
Q psy6859          78 FDMINMIK--LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN---------------------------  128 (261)
Q Consensus        78 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~---------------------------  128 (261)
                      ........  ..........++++++.++..   ...+..+.+|+........                           
T Consensus       115 ~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~  191 (333)
T d1ri6a_         115 GLPVGVVDVVEGLDGCHSANISPDNRTLWVP---ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  191 (333)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEE---EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             ccceecccccCCCccceEEEeeecceeeecc---ccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeE
Confidence            55433322  122222334455555443332   1223344444433221100                           


Q ss_pred             --------------------------EEee----cCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec
Q psy6859         129 --------------------------MIKL----DFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus       129 --------------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  178 (261)
                                                .+..    .........+.+++++.+ +++.+..++.+.+|++...+.......
T Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (333)
T d1ri6a_         192 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH-LYACDRTASLITVFSVSEDGSVLSKEG  270 (333)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             EeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc-eeeecccCCeEEEEEEcCCCCEEEEEE
Confidence                                      0000    001123455677888875 456667788999999873333322221


Q ss_pred             -cCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecc
Q psy6859         179 -RLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGY  212 (261)
Q Consensus       179 -~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~  212 (261)
                       ......+..++|+|||++|++++ .++.|++|+++
T Consensus       271 ~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         271 FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence             12345678899999999886665 56899999764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.64  E-value=7.6e-15  Score=111.73  Aligned_cols=248  Identities=10%  Similarity=-0.002  Sum_probs=154.5

Q ss_pred             CCCCeEEEEEcC-CCeE-EEecCCCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCC--EEEEEeCCC--------
Q psy6859           2 HRSPITHVVVTK-TDFV-ITASNDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGT--LLCTVASDK--------   68 (261)
Q Consensus         2 H~~~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~l~s~~~dg--------   68 (261)
                      |.-......++| |++| ++...++.|.++|+++.  +....+. .+...+..++|+|+++  |++..+.+.        
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~--k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIM--KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTT--EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCC--cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            333444555667 7766 55568889999999987  5555443 2456789999999988  444444332        


Q ss_pred             ---------cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeee------------------------------
Q psy6859          69 ---------AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVS------------------------------  109 (261)
Q Consensus        69 ---------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------------------------------  109 (261)
                               .+..+|..+.+...++..... ...+.+++++++++....-                              
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~-p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIVDGN-LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEESSC-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEecCCC-ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                     234578777777776665544 3455666666655443211                              


Q ss_pred             -------cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc--------c
Q psy6859         110 -------DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP--------L  174 (261)
Q Consensus       110 -------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--------~  174 (261)
                             -+.++.+.+++....+.+..+.....   ...+.++||+.+ +++++..+++|.+||+. +...        .
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGky-l~~~~~~~~tvsv~d~~-k~~~~~~~~~~~~  301 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKY-FIANGKLSPTVSVIAID-KLDDLFEDKIELR  301 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCE-EEEECTTSSBEEEEEGG-GHHHHTTTSSCGG
T ss_pred             cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCE-EEEeCCcCCcEEEEEee-hhhhHhhccCCcc
Confidence                   02245566666666666666655433   467899999996 47788999999999987 3211        1


Q ss_pred             eeec--cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCc
Q psy6859         175 HVLD--RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGN  252 (261)
Q Consensus       175 ~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  252 (261)
                      ..+.  ....-.....+|+++|..+.+...|..|..|++......+.............++...+|...+.+.+++|||+
T Consensus       302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             GGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             eEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCc
Confidence            1111  01112234568999999889999999999999853210000000000000011112257999999999999999


Q ss_pred             eEEEe
Q psy6859         253 KFVTI  257 (261)
Q Consensus       253 ~l~s~  257 (261)
                      ||+++
T Consensus       382 ~l~s~  386 (441)
T d1qnia2         382 WLVVL  386 (441)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99999

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=9.3e-15  Score=110.82  Aligned_cols=201  Identities=7%  Similarity=-0.079  Sum_probs=120.5

Q ss_pred             EEEEcC-CCeEEEe----------cCCCeEEEEeccCCceeeeEEeecccc-------ceeEEEEeeCCCEEEEEe-CCC
Q psy6859           8 HVVVTK-TDFVITA----------SNDGHIKFWKKQEEGIEFVKHFRSHLG-------VIHSICTNYNGTLLCTVA-SDK   68 (261)
Q Consensus         8 ~~~~~~-~~~l~s~----------~~d~~i~iw~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~s~~-~dg   68 (261)
                      .++|+| ++.|++.          +.|+.|.+||..+.  ++...+..+..       ....++|+|||++++.+. .++
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~--~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCC--cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCC
Confidence            578999 8777764          34788999999887  56665543322       235789999999998776 578


Q ss_pred             cEEEEEccccceeeeeeccCccee-------EEEEeecCCceeeee--------------------------------ee
Q psy6859          69 AMKVFDVINFDMINMIKLDFTPLT-------VECIHYLGDAIPTAA--------------------------------VS  109 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--------------------------------~s  109 (261)
                      .+.+||+.+++....+..+.....       ...+.+++.......                                .-
T Consensus       147 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  226 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV  226 (368)
T ss_dssp             CEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             eEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence            999999999988887764432210       011111111111000                                00


Q ss_pred             cCCCCeEEEEEcCCCceeeEEeecC----------CcceEEEEEEeCCCCceEEEEecC-------CCeEEEEEccCCCc
Q psy6859         110 DQDSSRVHIYDCKGNDMINMIKLDF----------TPLTVECIHYLGDAIPTAAVSDQD-------SSHVHIYDCKGNGT  172 (261)
Q Consensus       110 ~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~  172 (261)
                      ....+.+.++++.............          .+.....+++++++...+++....       ...|.+||.. +++
T Consensus       227 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~-t~~  305 (368)
T d1mdah_         227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS-VGQ  305 (368)
T ss_dssp             ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS-SCC
T ss_pred             EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC-CCc
Confidence            0122333344433332221111100          011123466677776533322111       2358899998 888


Q ss_pred             cceeeccCcccCeEEEEEcCCCC-E-EEEEcCCCeEEEeeccc
Q psy6859         173 PLHVLDRLHTKPVVLIKFNPIYQ-V-VVSVDKAGILEYWSGYK  213 (261)
Q Consensus       173 ~~~~~~~~~~~~v~~~~~~~~~~-~-l~~~~~dg~i~iwd~~~  213 (261)
                      .+..+.  +...+.+++|+|||+ + ++++..++.|++||..+
T Consensus       306 ~~~~~~--~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         306 TSGPIS--NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEECCE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             EeEEec--CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            888884  566789999999997 3 46777899999999954

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=1.4e-13  Score=104.25  Aligned_cols=124  Identities=12%  Similarity=-0.012  Sum_probs=82.3

Q ss_pred             eccccceeEEEEeeCCCEEEEEe-----CCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeee------ecC
Q psy6859          43 RSHLGVIHSICTNYNGTLLCTVA-----SDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAV------SDQ  111 (261)
Q Consensus        43 ~~~~~~v~~~~~~~~~~~l~s~~-----~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------s~~  111 (261)
                      ..+.+++..++++||++.++...     .++.+.+||..+++.+.++..+..+  ...++++++.++....      .+.
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            34778899999999999987652     3457999999999999887755543  5788999998876522      124


Q ss_pred             CCCeEEEEEcCCCceeeEEeecCCcc-----eEEEEEEeCCCCceEEEEecCCCeEEEEEcc
Q psy6859         112 DSSRVHIYDCKGNDMINMIKLDFTPL-----TVECIHYLGDAIPTAAVSDQDSSHVHIYDCK  168 (261)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  168 (261)
                      .++.|.+||..+++.+..+..+....     ....+.+++++...++.....++.+.+|+..
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~  156 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG  156 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeecc
Confidence            57889999999998877665432211     1123455555554333333334445555544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.54  E-value=2.1e-12  Score=100.92  Aligned_cols=102  Identities=10%  Similarity=0.034  Sum_probs=76.5

Q ss_pred             CCCCCeEEEEEcC-CCeEEEec---------CCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcE
Q psy6859           1 MHRSPITHVVVTK-TDFVITAS---------NDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAM   70 (261)
Q Consensus         1 gH~~~v~~~~~~~-~~~l~s~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v   70 (261)
                      +|...|.++.||| +++|+.++         .++.+.+||+.++  + ...+..+...+..+.|+|||+++|.. .++.+
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~--~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l  134 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR--Q-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDI  134 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--E-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEE
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC--c-ccccccCCccccccccccCcceeeEe-ecccc
Confidence            3567899999999 89888774         3577889999986  3 44567788899999999999999985 56789


Q ss_pred             EEEEccccceeeeeecc------------------CcceeEEEEeecCCceeee
Q psy6859          71 KVFDVINFDMINMIKLD------------------FTPLTVECIHYLGDAIPTA  106 (261)
Q Consensus        71 ~~wd~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~  106 (261)
                      .+|+..+++..+.....                  .......+++|+++.++..
T Consensus       135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~  188 (470)
T d2bgra1         135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (470)
T ss_dssp             EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             eEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcccee
Confidence            99999888765533211                  1112446688888877665

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=2.3e-12  Score=97.45  Aligned_cols=123  Identities=13%  Similarity=-0.026  Sum_probs=84.8

Q ss_pred             CCeEEEEEcC-CCe---EEEecCCCe--EEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe----------CC
Q psy6859           4 SPITHVVVTK-TDF---VITASNDGH--IKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA----------SD   67 (261)
Q Consensus         4 ~~v~~~~~~~-~~~---l~s~~~d~~--i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----------~d   67 (261)
                      ++...++..+ ++.   .+....++.  +.+||..+.  +.+..+..+..+  .++|+|||+.|++++          .|
T Consensus        20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~--~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTT--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCC--cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            3444445555 442   233455555  555576666  777777766543  689999999888764          46


Q ss_pred             CcEEEEEccccceeeeeeccCcc-------eeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec
Q psy6859          68 KAMKVFDVINFDMINMIKLDFTP-------LTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD  133 (261)
Q Consensus        68 g~v~~wd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~  133 (261)
                      +.|.+||..+++.+..+..+...       .....++++++.++..   ...++.+.+||+.+++....+..+
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va---~~~~~~v~~~d~~~~~~~~~~~~~  165 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFF---LFGSSAAAGLSVPGASDDQLTKSA  165 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEE---ECSSSCEEEEEETTTEEEEEEECS
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEE---eCCCCeEEEEECCCCcEeEEeecc
Confidence            78999999999988877643221       2346789999887654   245799999999999887776543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.51  E-value=2.5e-12  Score=97.84  Aligned_cols=232  Identities=9%  Similarity=0.038  Sum_probs=141.3

Q ss_pred             EEEecCCCeEEEEeccCCceeeeEEeec------------------------------cccceeEEEEeeCCCEEEEEe-
Q psy6859          17 VITASNDGHIKFWKKQEEGIEFVKHFRS------------------------------HLGVIHSICTNYNGTLLCTVA-   65 (261)
Q Consensus        17 l~s~~~d~~i~iw~~~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~s~~-   65 (261)
                      +++++.+|.|++|++.+.  +.++.+.-                              |.........+|||++|+... 
T Consensus        14 f~Sgg~sG~V~V~dlpS~--r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSM--RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTT--EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCC--cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            678899999999999876  55554321                              222233444578999987665 


Q ss_pred             CCCcEEEEEccccceeeeeecc-CcceeEEEEeecCCceeeeeeecC-----CC----------CeEEEEEcCCCceeeE
Q psy6859          66 SDKAMKVFDVINFDMINMIKLD-FTPLTVECIHYLGDAIPTAAVSDQ-----DS----------SRVHIYDCKGNDMINM  129 (261)
Q Consensus        66 ~dg~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~-----~d----------~~i~i~d~~~~~~~~~  129 (261)
                      .+++|.++|+.+++....+..+ ......+.++++++..+....+..     .+          ..+..+|..+.+....
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            6789999999999988877654 344566788888876554321100     00          2345688888877777


Q ss_pred             EeecCCcceEEEEEEeCCCCceEEEEec---------------------------------------CCCeEEEEEccCC
Q psy6859         130 IKLDFTPLTVECIHYLGDAIPTAAVSDQ---------------------------------------DSSHVHIYDCKGN  170 (261)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~d~~i~i~d~~~~  170 (261)
                      +....   ....+.++|++.+.++.+..                                       .++.+.+++.. .
T Consensus       172 I~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~-~  247 (441)
T d1qnia2         172 VIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG-E  247 (441)
T ss_dssp             EEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS-S
T ss_pred             EecCC---CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc-C
Confidence            76544   34678889998864322211                                       13344444444 4


Q ss_pred             CccceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECC
Q psy6859         171 GTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP  249 (261)
Q Consensus       171 ~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  249 (261)
                      .+.+..++ .. .....+.++|||+++ +++..++++.+||++.-...+....    .....+.-.....-.....+|.+
T Consensus       248 ~~v~~~IP-vg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~----~~~~~~~~~~~~glgplh~~fd~  321 (441)
T d1qnia2         248 SEFTRYIP-VP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI----ELRDTIVAEPELGLGPLHTTFDG  321 (441)
T ss_dssp             CSSEEEEC-CB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS----CGGGGEEECCBCCSCEEEEEECS
T ss_pred             CceEEEEe-CC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC----CcceEEEeecccccCcccceecC
Confidence            45666664 33 335789999999987 5667999999999864211111000    00011110011111234457999


Q ss_pred             CCceEEEeecC
Q psy6859         250 DGNKFVTISMD  260 (261)
Q Consensus       250 ~~~~l~s~~~D  260 (261)
                      +|+.+.+...|
T Consensus       322 ~g~~yts~~~d  332 (441)
T d1qnia2         322 RGNAYTTLFID  332 (441)
T ss_dssp             SSEEEEEETTT
T ss_pred             CceEEEccccc
Confidence            98877776655

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.51  E-value=7e-11  Score=86.71  Aligned_cols=229  Identities=9%  Similarity=0.034  Sum_probs=145.7

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce-ee
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM-IN   82 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~-~~   82 (261)
                      .+..+++.| |+++++...+++|..|+.+..    ...+......+.+++|+++|+++++...++.+..++...... ..
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~----~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN----QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC----EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC----EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence            467899999 899999999999988886643    222334557789999999999988888888888888754321 11


Q ss_pred             ee-ec-cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee--------cCCcceEEEEEEeCCCCceE
Q psy6859          83 MI-KL-DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL--------DFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        83 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  152 (261)
                      .+ .. .........+.+++..+++-    +.++.+..+|...+........        .........+.+.++.   +
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~---l  177 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTAD----SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF---L  177 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEE----TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE---E
T ss_pred             eccccCCccccceeEEccCCCEEeec----cccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCc---e
Confidence            11 11 22223444555666544433    6778888888877643322211        1111234566666543   4


Q ss_pred             EEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccc
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTD  231 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  231 (261)
                      +++.+..+.|..++.. ......... .........++++++|++.++...++.|..++...+              ...
T Consensus       178 ~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~--------------~~~  242 (302)
T d2p4oa1         178 YVSNTEKMLLLRIPVD-STDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS--------------TTI  242 (302)
T ss_dssp             EEEETTTTEEEEEEBC-TTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC--------------EEE
T ss_pred             eeecCCCCeEEecccc-ccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC--------------EEE
Confidence            6777788999999987 332222111 023344567999999998787778888999986421              112


Q ss_pred             eeecCCCccceeeeeE---CCCCceEEEeec
Q psy6859         232 LFEFAKNKTYPSGLSF---SPDGNKFVTISM  259 (261)
Q Consensus       232 ~~~~~~~~~~v~~~~~---s~~~~~l~s~~~  259 (261)
                      +......-..+++++|   +||++.|..++.
T Consensus       243 ~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         243 IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            2223333455789999   778888776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=4.3e-09  Score=75.46  Aligned_cols=220  Identities=10%  Similarity=0.010  Sum_probs=124.7

Q ss_pred             CCCeEEEEEcC-CCeEEEecCC-C--eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CCcEEEEEcc-
Q psy6859           3 RSPITHVVVTK-TDFVITASND-G--HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DKAMKVFDVI-   76 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d-~--~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~v~~wd~~-   76 (261)
                      ...+..-+||| |+.||-.... +  .+.+.+....   ....+..+........|+|+++.++.... ++...++... 
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             CCceeeeEECCCCCEEEEEEeeccCcceeeeecccC---ceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            35667889999 8888755333 2  3555555543   23344446677888999999998887654 3333333322 


Q ss_pred             -ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEE
Q psy6859          77 -NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVS  155 (261)
Q Consensus        77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (261)
                       ......... .............+..+... ........|.+.++.........   ..........++|++...+ ..
T Consensus       115 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~~~-~~  188 (269)
T d2hqsa1         115 ASGQIRQVTD-GRSNNTEPTWFPDSQNLAFT-SDQAGRPQVYKVNINGGAPQRIT---WEGSQNQDADVSSDGKFMV-MV  188 (269)
T ss_dssp             TTCCEEECCC-CSSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTSSCCEECC---CSSSEEEEEEECTTSSEEE-EE
T ss_pred             ccccceeeee-ccccccccccccccccceec-ccccCCceEeeeecccccceeee---cccccccccccccccceeE-EE
Confidence             222222222 22222233344444443333 11122335666666665433222   2334667788999998743 33


Q ss_pred             ecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcC---CCeEEEeecccccccCCeeeeeecccccce
Q psy6859         156 DQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDK---AGILEYWSGYKQEFKFPKCVHFESKLDTDL  232 (261)
Q Consensus       156 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  232 (261)
                      ....+...+|............  ..........|+|||+.|+..+.   ...|.++++..                ...
T Consensus       189 ~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg----------------~~~  250 (269)
T d2hqsa1         189 SSNGGQQHIAKQDLATGGVQVL--SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG----------------RFK  250 (269)
T ss_dssp             EECSSCEEEEEEETTTCCEEEC--CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS----------------CCE
T ss_pred             eecCCceeeeEeecccccceEe--ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC----------------CCE
Confidence            3445555555554223333333  45566778899999998864442   34677888753                334


Q ss_pred             eecCCCccceeeeeECC
Q psy6859         233 FEFAKNKTYPSGLSFSP  249 (261)
Q Consensus       233 ~~~~~~~~~v~~~~~s~  249 (261)
                      ..+....+.+...+|||
T Consensus       251 ~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         251 ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EECCCSSSEEEEEEECC
T ss_pred             EEEeCCCCcEEeEEeCC
Confidence            45555667788899998

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=5.1e-12  Score=94.71  Aligned_cols=78  Identities=15%  Similarity=0.181  Sum_probs=62.9

Q ss_pred             CCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc
Q psy6859         112 DSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN  191 (261)
Q Consensus       112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~  191 (261)
                      ....|.+||..+++.+..+...   ..+.+++|+|++...+++++..++.|++||.+ +++.++++. .+......+.+.
T Consensus       278 ~~~~v~v~d~~t~~~~~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~-tg~~~~~i~-~~G~~p~~i~~~  352 (355)
T d2bbkh_         278 ASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE-SGEELRSVN-QLGHGPQVITTA  352 (355)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETT-TCCEEEEEC-CCCSSCCEEECC
T ss_pred             CCCeEEEEeCCCCcEEEEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECC-CCCEEEEEe-CcCCCccEEEeC
Confidence            3468999999999988877653   35788999999987778888889999999999 999999997 666666666665


Q ss_pred             CCC
Q psy6859         192 PIY  194 (261)
Q Consensus       192 ~~~  194 (261)
                      ++|
T Consensus       353 d~~  355 (355)
T d2bbkh_         353 DMG  355 (355)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.34  E-value=7.9e-11  Score=91.80  Aligned_cols=139  Identities=6%  Similarity=0.004  Sum_probs=97.3

Q ss_pred             EEEEcC-CCeEEEecCCCeEEEEeccCCceeee---EEeeccccceeEEEEeeCCCEEEEEeC---------CCcEEEEE
Q psy6859           8 HVVVTK-TDFVITASNDGHIKFWKKQEEGIEFV---KHFRSHLGVIHSICTNYNGTLLCTVAS---------DKAMKVFD   74 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~---------dg~v~~wd   74 (261)
                      .+.|.+ ++++.  ..|+.+.+||+.++....+   ..+..|...|.++.|+||+++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            467888 55554  3578899999998732221   123445678999999999999998753         56789999


Q ss_pred             ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCC----------------cce
Q psy6859          75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFT----------------PLT  138 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~----------------~~~  138 (261)
                      +.+++.. .+...........++|+|+.++..     .++.+.+|+..+++..+.......                ...
T Consensus        99 ~~~~~~~-~l~~~~~~~~~~~~SPDG~~ia~~-----~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          99 LNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-----WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             TTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-----ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             CCCCccc-ccccCCccccccccccCcceeeEe-----ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence            9887754 344455567788899999988875     678999999998876544321110                112


Q ss_pred             EEEEEEeCCCCceEEE
Q psy6859         139 VECIHYLGDAIPTAAV  154 (261)
Q Consensus       139 ~~~~~~~~~~~~~~~~  154 (261)
                      ...+.|+||+.+++++
T Consensus       173 ~~~~~wSPDGk~ia~~  188 (470)
T d2bgra1         173 YSALWWSPNGTFLAYA  188 (470)
T ss_dssp             SBCEEECTTSSEEEEE
T ss_pred             ccccEECCCCCcccee
Confidence            3457799999874443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.33  E-value=2.1e-08  Score=73.83  Aligned_cols=232  Identities=11%  Similarity=0.034  Sum_probs=138.9

Q ss_pred             eEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC----CCcEEEEEccccce
Q psy6859           6 ITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS----DKAMKVFDVINFDM   80 (261)
Q Consensus         6 v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----dg~v~~wd~~~~~~   80 (261)
                      +..++|.+ ++++++-...+.|..|+.++.  .....+.........+++.++|+++++...    .+.+...+......
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~--~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETK--EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTC--CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCC--eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            46789988 888888788899998988765  334444444556789999999988776543    23344445444433


Q ss_pred             eeeeecc--CcceeEEEEeecCCceeeeeeec--CCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEe
Q psy6859          81 INMIKLD--FTPLTVECIHYLGDAIPTAAVSD--QDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSD  156 (261)
Q Consensus        81 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (261)
                      .......  ........+.++|+..++-....  ...+.+..++............   -.....++|+|++.. ++++-
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~---~~~pnGia~s~dg~~-lyvad  195 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKV-LWVTE  195 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSE-EEEEE
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeec---cceeeeeeeccccce-EEEec
Confidence            3322211  11223445556665333210000  0123355555444332222221   113467999999874 46777


Q ss_pred             cCCCeEEEEEccCCCccceeec------cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeeccccc
Q psy6859         157 QDSSHVHIYDCKGNGTPLHVLD------RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDT  230 (261)
Q Consensus       157 ~~d~~i~i~d~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  230 (261)
                      +..+.|..||+...+.......      .........++++++|++.++....+.|.+||..                ++
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~----------------G~  259 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR----------------GY  259 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT----------------SC
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC----------------Cc
Confidence            7789999999873333322111      0112335789999999977777788999999953                44


Q ss_pred             ceeecC------CCccceeeeeECCCCceEEEeec
Q psy6859         231 DLFEFA------KNKTYPSGLSFSPDGNKFVTISM  259 (261)
Q Consensus       231 ~~~~~~------~~~~~v~~~~~s~~~~~l~s~~~  259 (261)
                      .+..+.      ++...+++++|.|++..|++...
T Consensus       260 ~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         260 PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            444332      34456789999998877766544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=2.3e-09  Score=76.69  Aligned_cols=225  Identities=12%  Similarity=0.039  Sum_probs=131.8

Q ss_pred             CeEEEEEcC-CCeEEE-ecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q psy6859           5 PITHVVVTK-TDFVIT-ASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMIN   82 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~   82 (261)
                      .-..|++.+ ++++++ .+..+.+..++..... .......+. .....++++++++++++....+.+++++-.+...+.
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~-~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-TTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----C-EEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-EEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            347899998 775554 4556777777665532 222222222 345789999999887776666667666655544443


Q ss_pred             eeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeE
Q psy6859          83 MIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHV  162 (261)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  162 (261)
                      ....... ...+.+.++++..+.-    ..+..+..++........ .... .......+++++++.  ++++...++.|
T Consensus        93 ~~~~~~~-p~~iavd~~g~i~v~d----~~~~~~~~~~~~~~~~~~-~~~~-~~~~p~~i~~~~~g~--~~v~~~~~~~i  163 (260)
T d1rwia_          93 PFDGLNY-PEGLAVDTQGAVYVAD----RGNNRVVKLAAGSKTQTV-LPFT-GLNDPDGVAVDNSGN--VYVTDTDNNRV  163 (260)
T ss_dssp             CCCSCCS-EEEEEECTTCCEEEEE----GGGTEEEEECTTCSSCEE-CCCC-SCCSCCEEEECTTCC--EEEEEGGGTEE
T ss_pred             eeeeeee-cccccccccceeEeec----cccccccccccccceeee-eeec-ccCCcceeeecCCCC--Eeeeccccccc
Confidence            3322222 2345555555433322    345556666655433211 1111 112335788888886  36666778889


Q ss_pred             EEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecC-CCccc
Q psy6859         163 HIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFA-KNKTY  241 (261)
Q Consensus       163 ~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  241 (261)
                      ..+|.. ... ...+....-.....|+++++|+++++....+.|..++...                .....+. ..-..
T Consensus       164 ~~~d~~-~~~-~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~----------------~~~~~~~~~~~~~  225 (260)
T d1rwia_         164 VKLEAE-SNN-QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS----------------TTSTVLPFTGLNT  225 (260)
T ss_dssp             EEECTT-TCC-EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC----------------SCCEECCCCSCCC
T ss_pred             cccccc-cce-eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC----------------CeEEEEccCCCCC
Confidence            999986 332 2222213445678999999999888888888888887642                1111111 12345


Q ss_pred             eeeeeECCCCceEEEee
Q psy6859         242 PSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       242 v~~~~~s~~~~~l~s~~  258 (261)
                      ...|+++++|+++++-.
T Consensus       226 P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         226 PLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             EEEEEECTTCCEEEEEG
T ss_pred             eEEEEEeCCCCEEEEEC
Confidence            68999999998776643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=2e-08  Score=72.51  Aligned_cols=224  Identities=12%  Similarity=0.151  Sum_probs=141.9

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecc------ccceeEEEEeeCC-CEEEEE-eCCCcEEEEEc
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH------LGVIHSICTNYNG-TLLCTV-ASDKAMKVFDV   75 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~s~-~~dg~v~~wd~   75 (261)
                      .-..|++++ ++++++-..+..|++|+.+.   +.+..+...      ......+++.++. .++++. +.++.|..++.
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC---CEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            457899999 88888777788999999764   344444211      1123455655543 344433 34556777775


Q ss_pred             cccceeeeeecc-CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEE
Q psy6859          76 INFDMINMIKLD-FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAV  154 (261)
Q Consensus        76 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (261)
                       .++....+... ........+.+++..+++-    ...+.+.+++.. ++.+..+...........+++.+++.  +++
T Consensus       101 -~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~----~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~--i~v  172 (279)
T d1q7fa_         101 -YGQFVRKFGATILQHPRGVTVDNKGRIIVVE----CKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE--IFI  172 (279)
T ss_dssp             -TSCEEEEECTTTCSCEEEEEECTTSCEEEEE----TTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE--EEE
T ss_pred             -cccceeecCCCcccccceeccccCCcEEEEe----eccceeeEeccC-Cceeecccccccccccceeeecccee--EEe
Confidence             56666555422 1223345555555544433    556677777754 44556655444555677888888875  477


Q ss_pred             EecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCCeeeeeecccccce
Q psy6859         155 SDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLDTDL  232 (261)
Q Consensus       155 ~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  232 (261)
                      +....+.|++||.  .++.+.++. .+.......|+++|+|+++++-. .++.|.+|+..                ++.+
T Consensus       173 ~d~~~~~V~~~d~--~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~----------------G~~~  234 (279)
T d1q7fa_         173 SDNRAHCVKVFNY--EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD----------------GQLI  234 (279)
T ss_dssp             EEGGGTEEEEEET--TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT----------------SCEE
T ss_pred             eeccccceeeeec--CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC----------------CCEE
Confidence            7777899999997  466676663 13445678999999999776654 45579999853                4444


Q ss_pred             eecC--CCccceeeeeECCCCceEEEe
Q psy6859         233 FEFA--KNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       233 ~~~~--~~~~~v~~~~~s~~~~~l~s~  257 (261)
                      ..+.  ........+++.|||+++++.
T Consensus       235 ~~~~~~~~~~~p~~vav~~dG~l~V~~  261 (279)
T d1q7fa_         235 SALESKVKHAQCFDVALMDDGSVVLAS  261 (279)
T ss_dssp             EEEEESSCCSCEEEEEEETTTEEEEEE
T ss_pred             EEEeCCCCCCCEeEEEEeCCCcEEEEe
Confidence            4442  223457899999999866653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.30  E-value=6.5e-09  Score=78.06  Aligned_cols=242  Identities=7%  Similarity=-0.041  Sum_probs=135.0

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEE--EEEe-CCCcEEEEEcccc-
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLL--CTVA-SDKAMKVFDVINF-   78 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~s~~-~dg~v~~wd~~~~-   78 (261)
                      ..+.-|+|+| ++.|.++. .+.+..|.+....................+.++++++.+  +++. ..+.+..+.+... 
T Consensus        40 ~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~  118 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCC
Confidence            3456799999 77776665 467788877653212111111122345677888888743  3332 2355555544221 


Q ss_pred             ceeeee---------------e-ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceee---EEeecCCcceE
Q psy6859          79 DMINMI---------------K-LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMIN---MIKLDFTPLTV  139 (261)
Q Consensus        79 ~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~  139 (261)
                      .....+               . ........+.++|+++++++.   ......|.+|+......+.   ...........
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~---d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA---DLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE---ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe---eCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            111100               0 111124567888899877765   2345678888766433222   22222233467


Q ss_pred             EEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec------------------cCcccCeEEEEEcCCCCEEEEEc
Q psy6859         140 ECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD------------------RLHTKPVVLIKFNPIYQVVVSVD  201 (261)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~l~~~~  201 (261)
                      +.+.|+|++.. ++++...+++|.+|++. ..+......                  .........+.++|+|++|+++.
T Consensus       196 r~i~f~pdg~~-~yv~~e~~~~V~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         196 RWVAMHPTGNY-LYALMEAGNRICEYVID-PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             EEEEECTTSSE-EEEEETTTTEEEEEEEC-TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCce-EEEeccCCCEEEEEEec-CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            89999999985 46677779999999987 443221110                  01123356789999999987764


Q ss_pred             C------CCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECC-CCceEEEeecC
Q psy6859         202 K------AGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSP-DGNKFVTISMD  260 (261)
Q Consensus       202 ~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~D  260 (261)
                      .      .+.|..|++.....     .    .....+............++++| +|++|+++..+
T Consensus       274 r~~~~~~~~~i~~~~~~~~g~-----~----~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~  330 (365)
T d1jofa_         274 RANKFELQGYIAGFKLRDCGS-----I----EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSC-----E----EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             ccCCCccceEEEEEEecCCCc-----e----eeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC
Confidence            2      22366666642100     0    00001111122345668899998 89988877543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.26  E-value=5.6e-08  Score=71.26  Aligned_cols=233  Identities=14%  Similarity=0.063  Sum_probs=132.4

Q ss_pred             eEEEEEcC-CCeEEEecC-------CCeEEEEeccCCceeeeEEee--ccccceeEEEEeeCCCEEEEEeCCCcEEEEEc
Q psy6859           6 ITHVVVTK-TDFVITASN-------DGHIKFWKKQEEGIEFVKHFR--SHLGVIHSICTNYNGTLLCTVASDKAMKVFDV   75 (261)
Q Consensus         6 v~~~~~~~-~~~l~s~~~-------d~~i~iw~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~   75 (261)
                      .-.++|.| ++++++...       +|+|..|+..+..........  ...+.-..++|.++++.++++...+.+...+.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            45678998 776665432       467888888775322222111  11223578999999988888877777888887


Q ss_pred             cccceeee-eeccCcc---eeEEEEeecCCceeeeeee-----------cCCCCeEEEEEcCCCceeeEEeecCCcceEE
Q psy6859          76 INFDMINM-IKLDFTP---LTVECIHYLGDAIPTAAVS-----------DQDSSRVHIYDCKGNDMINMIKLDFTPLTVE  140 (261)
Q Consensus        76 ~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~s-----------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  140 (261)
                      ........ ......+   .....+.+++...++-...           -...+.|..++... +.......-.   ...
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~---~pN  175 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQ---FPN  175 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEES---SEE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCcc---eee
Confidence            54432211 1111111   1234455555433221000           01123444444432 2222222111   235


Q ss_pred             EEEEeCCCC---ceEEEEecCCCeEEEEEccCCCccc-----eeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         141 CIHYLGDAI---PTAAVSDQDSSHVHIYDCKGNGTPL-----HVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       141 ~~~~~~~~~---~~~~~~~~~d~~i~i~d~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      .++++|++.   ..++++.+..+.|..||+...+...     ..+..........+++.++|++.++....+.|.+||.+
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence            677877653   2346777788999999987333221     12221123345789999999977777778899999974


Q ss_pred             cccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEe
Q psy6859         213 KQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  257 (261)
                      .               ++.+..+......+++++|.||++.|...
T Consensus       256 ~---------------g~~~~~i~~p~~~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         256 G---------------GQPKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             C---------------BSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             C---------------CEEEEEEECCCCCEEEEEEeCCCCEEEEE
Confidence            3               44444455555678899999999755443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.3e-08  Score=72.84  Aligned_cols=208  Identities=10%  Similarity=0.026  Sum_probs=116.6

Q ss_pred             eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCC---cEEEEEccccceeeeeeccCcceeEEEEeecCC
Q psy6859          25 HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDK---AMKVFDVINFDMINMIKLDFTPLTVECIHYLGD  101 (261)
Q Consensus        25 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (261)
                      .|.|-|.+..  ... .+..+...+..-+|||||+.||-.....   .+.+.+...+..... ...........+++++.
T Consensus        20 ~l~i~d~dG~--~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGY--NQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSC--SCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-ECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCC--CcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEE-eeeecccccceecCCCC
Confidence            5777777664  222 2233456788899999999998765433   466666655544333 33344456677888888


Q ss_pred             ceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe--EEEEEccCCCccceeecc
Q psy6859         102 AIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH--VHIYDCKGNGTPLHVLDR  179 (261)
Q Consensus       102 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--i~i~d~~~~~~~~~~~~~  179 (261)
                      .++.... ......+..+............   .........++++.... +++...++.  |.+.++.  ......+. 
T Consensus        96 ~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~~~~--~~~~~~~~-  167 (269)
T d2hqsa1          96 KLAFALS-KTGSLNLYVMDLASGQIRQVTD---GRSNNTEPTWFPDSQNL-AFTSDQAGRPQVYKVNIN--GGAPQRIT-  167 (269)
T ss_dssp             EEEEEEC-TTSSCEEEEEETTTCCEEECCC---CSSCEEEEEECTTSSEE-EEEECTTSSCEEEEEETT--SSCCEECC-
T ss_pred             eeeEeee-cCCccceeecccccccceeeee---ccccccccccccccccc-eecccccCCceEeeeecc--cccceeee-
Confidence            7765421 1122233333333333222222   22233445566666543 444444554  4555554  33334443 


Q ss_pred             CcccCeEEEEEcCCCCEEEEEc-CCCeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         180 LHTKPVVLIKFNPIYQVVVSVD-KAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       180 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      ..........|+|+++.++..+ ..+...+|....             ..+ .. ....+........|||||++|+..+
T Consensus       168 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~-------------~~~-~~-~~~~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         168 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL-------------ATG-GV-QVLSSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET-------------TTC-CE-EECCCSSSCEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccceeEEEeecCCceeeeEeec-------------ccc-cc-eEeecCccccceEECCCCCEEEEEE
Confidence            5566677889999999876655 444555554432             111 12 2233455667889999999998665


Q ss_pred             c
Q psy6859         259 M  259 (261)
Q Consensus       259 ~  259 (261)
                      .
T Consensus       233 ~  233 (269)
T d2hqsa1         233 S  233 (269)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.15  E-value=5.8e-08  Score=72.77  Aligned_cols=238  Identities=10%  Similarity=0.005  Sum_probs=123.5

Q ss_pred             eEEEec--CCCeEEEEeccCCc--eeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccc-eeeee--ecc
Q psy6859          16 FVITAS--NDGHIKFWKKQEEG--IEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFD-MINMI--KLD   87 (261)
Q Consensus        16 ~l~s~~--~d~~i~iw~~~~~~--~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~-~~~~~--~~~   87 (261)
                      .|+.|+  ..+.|.++.++...  ...+.... .....+..|+|++++++|+++.. +.+..|.+.... .....  ...
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~   82 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence            356664  46678777665432  23333222 23455678999999999988765 567788776432 22211  111


Q ss_pred             CcceeEEEEeecCCceeeeeeecCCCCeEE------------EEEcCCCcee----eEEeecCCcceEEEEEEeCCCCce
Q psy6859          88 FTPLTVECIHYLGDAIPTAAVSDQDSSRVH------------IYDCKGNDMI----NMIKLDFTPLTVECIHYLGDAIPT  151 (261)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~------------i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  151 (261)
                      ..+ ..+.+.++++.++... .....+.+.            ++.+.....+    ..... .....+.++.|+|++.++
T Consensus        83 ~~p-~~v~~~~~~~~~~v~~-a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-q~~~h~h~v~~sPdG~~l  159 (365)
T d1jofa_          83 GHP-RANDADTNTRAIFLLA-AKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY-QENTGIHGMVFDPTETYL  159 (365)
T ss_dssp             SSG-GGGCTTSCCEEEEEEE-CSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC-CTTCCEEEEEECTTSSEE
T ss_pred             CCc-EEEEECCCCCEEEEEE-ecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCccc-CCCCcceEEEECCCCCEE
Confidence            111 1223333333222211 111233333            3333221111    11111 122246899999999974


Q ss_pred             EEEEecCCCeEEEEEccCCCccc--eeec-cCcccCeEEEEEcCCCCEEE-EEcCCCeEEEeecccccccCCee---eee
Q psy6859         152 AAVSDQDSSHVHIYDCKGNGTPL--HVLD-RLHTKPVVLIKFNPIYQVVV-SVDKAGILEYWSGYKQEFKFPKC---VHF  224 (261)
Q Consensus       152 ~~~~~~~d~~i~i~d~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~---~~~  224 (261)
                       +++......|.+|+....+...  .... .........++|+|++++++ +...++.|.+|++..+.......   ...
T Consensus       160 -~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~  238 (365)
T d1jofa_         160 -YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL  238 (365)
T ss_dssp             -EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred             -EEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecc
Confidence             4444556689999876344322  1111 12356789999999999884 45578899999986532211000   000


Q ss_pred             ec-ccccceeecCCCccceeeeeECCCCceEEEee
Q psy6859         225 ES-KLDTDLFEFAKNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       225 ~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                      .. ...........+......+.++|||++|+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            00 00000001112334566789999999988763

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.02  E-value=9.7e-08  Score=69.59  Aligned_cols=193  Identities=8%  Similarity=0.008  Sum_probs=119.9

Q ss_pred             CCCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe-eccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccce
Q psy6859           3 RSPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF-RSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDM   80 (261)
Q Consensus         3 ~~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~   80 (261)
                      ...+.+++|.+ ++++++...++.+..|+............ .......+.+.+.++++++++.+.++.+..++...+..
T Consensus        67 ~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~  146 (302)
T d2p4oa1          67 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG  146 (302)
T ss_dssp             SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcc
Confidence            35678999999 88888888888888887765321222211 12345678999999999988888888888888776543


Q ss_pred             eeeee--------ccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceE
Q psy6859          81 INMIK--------LDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTA  152 (261)
Q Consensus        81 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (261)
                      .....        ..........+..+++.++..   .+..+.|..+++....................+++.+++.  +
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~--l  221 (302)
T d2p4oa1         147 SIWLEHPMLARSNSESVFPAANGLKRFGNFLYVS---NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN--L  221 (302)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEE---ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC--E
T ss_pred             eeEecCCccceeeccCcccccccccccCCceeee---cCCCCeEEeccccccccccccccccCCCCCcceEECCCCC--E
Confidence            22211        111112223344455544332   3678889888887654332222111122345789999996  3


Q ss_pred             EEEecCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEE---cCCCCEEEEEcCC
Q psy6859         153 AVSDQDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKF---NPIYQVVVSVDKA  203 (261)
Q Consensus       153 ~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d  203 (261)
                      +++...++.|..++..  ++.  +.... ..-...++++|   ++|++.|+.++..
T Consensus       222 ~va~~~~~~V~~i~p~--G~~~~~~~~~-~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         222 YGATHIYNSVVRIAPD--RSTTIIAQAE-QGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEECBTTCCEEEECTT--CCEEEEECGG-GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEEEcCCCcEEEECCC--CCEEEEEecC-CCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            6666668889988875  332  33333 33456799999   6788877665543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=1e-07  Score=67.91  Aligned_cols=193  Identities=11%  Similarity=0.055  Sum_probs=119.8

Q ss_pred             eEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeee
Q psy6859           6 ITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMI   84 (261)
Q Consensus         6 v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~   84 (261)
                      ...+++++ ++++++....+.+++++-.+.  .......+ .....++++.++++++++-..+..+..++..........
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~--~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~  135 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNN--QTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP  135 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSC--CEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccc--eeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeee
Confidence            35678888 777777766666666554433  33333222 245689999999988877666667777776443322211


Q ss_pred             eccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEE
Q psy6859          85 KLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHI  164 (261)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  164 (261)
                      .........+.+.++++.+++.    ..++.|..+|........ +.. ........+++.+++.  ++++....+.|..
T Consensus       136 ~~~~~~p~~i~~~~~g~~~v~~----~~~~~i~~~d~~~~~~~~-~~~-~~~~~p~gi~~d~~g~--l~vsd~~~~~i~~  207 (260)
T d1rwia_         136 FTGLNDPDGVAVDNSGNVYVTD----TDNNRVVKLEAESNNQVV-LPF-TDITAPWGIAVDEAGT--VYVTEHNTNQVVK  207 (260)
T ss_dssp             CCSCCSCCEEEECTTCCEEEEE----GGGTEEEEECTTTCCEEE-CCC-SSCCSEEEEEECTTCC--EEEEETTTTEEEE
T ss_pred             ecccCCcceeeecCCCCEeeec----cccccccccccccceeee-eec-cccCCCccceeeeeee--eeeeecCCCEEEE
Confidence            1112223455666666644443    567789999877654332 211 1223457899999886  3777777888888


Q ss_pred             EEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeec
Q psy6859         165 YDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSG  211 (261)
Q Consensus       165 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  211 (261)
                      ++.. . .....+....-.....|+++++|.++++-..+++|+.++.
T Consensus       208 ~~~~-~-~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         208 LLAG-S-TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ECTT-C-SCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EeCC-C-CeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            8865 2 2333332123346789999999987777777787877765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.98  E-value=1.4e-06  Score=63.13  Aligned_cols=222  Identities=7%  Similarity=-0.048  Sum_probs=135.9

Q ss_pred             EEEEcC--CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeee
Q psy6859           8 HVVVTK--TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIK   85 (261)
Q Consensus         8 ~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~   85 (261)
                      +..|.+  +.++.+--..+.|..||.+++  +. ..+. ....+.++++.+++.++++ +.+ .+.++|..+++......
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g--~~-~~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASG--RK-TVHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTT--EE-EEEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCC--eE-EEEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEee
Confidence            345665  344455456678888888875  22 2222 3356788999999876665 454 58899998887544332


Q ss_pred             cc----CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          86 LD----FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        86 ~~----~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      ..    ........+.++|...++...-....+.-.+|.+..++........   .....+.+++++.. ++++.+..+.
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~---~~~Ng~~~s~d~~~-l~~~dt~~~~  171 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI---SIPNSICFSPDGTT-GYFVDTKVNR  171 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE---SSEEEEEECTTSCE-EEEEETTTCE
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc---CCcceeeecCCCce-EEEeecccce
Confidence            21    1123344555566543332111122344556666666544443322   23467889999875 4677777899


Q ss_pred             EEEEEccCCCcc----ce---eeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceee
Q psy6859         162 VHIYDCKGNGTP----LH---VLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFE  234 (261)
Q Consensus       162 i~i~d~~~~~~~----~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  234 (261)
                      |..|++......    ..   .+. ........+++.++|++.++.-..+.|..||..                ++.+..
T Consensus       172 I~~~~~d~~~~~~~~~~~~~~~~~-~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~----------------G~~~~~  234 (295)
T d2ghsa1         172 LMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD----------------GNHIAR  234 (295)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTEEEEECTT----------------CCEEEE
T ss_pred             eeEeeecccccccccceEEEeccC-cccccccceEEcCCCCEEeeeeCCCceEEecCC----------------CcEeeE
Confidence            999987522111    11   121 344567889999999877666667889999953                566666


Q ss_pred             cCCCccceeeeeEC-CCCceEEE
Q psy6859         235 FAKNKTYPSGLSFS-PDGNKFVT  256 (261)
Q Consensus       235 ~~~~~~~v~~~~~s-~~~~~l~s  256 (261)
                      +.-....+++++|- ||.+.|..
T Consensus       235 i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         235 YEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             EECSCSBEEEEEEESTTSCEEEE
T ss_pred             ecCCCCceEEEEEeCCCCCEEEE
Confidence            66555678999995 67665543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.97  E-value=1.7e-06  Score=63.12  Aligned_cols=200  Identities=14%  Similarity=0.144  Sum_probs=118.5

Q ss_pred             EEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEe-eccc-cceeEEEEeeCCCEEEEEeC---------------CC
Q psy6859           7 THVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHF-RSHL-GVIHSICTNYNGTLLCTVAS---------------DK   68 (261)
Q Consensus         7 ~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~l~s~~~---------------dg   68 (261)
                      ..++|.+ ++.++++...+.|...+.+.......... .+.. ...+.+++.++|++.++-..               +|
T Consensus        74 ~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G  153 (314)
T d1pjxa_          74 AGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             eeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCc
Confidence            4688888 77777777667788888776421111110 1110 13578999999988877432               22


Q ss_pred             cEEEEEccccceeeeeeccCcceeEEEEeecCCc-eeeeeeecCCCCeEEEEEcCCCceeeEE----eec-CCcceEEEE
Q psy6859          69 AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDA-IPTAAVSDQDSSRVHIYDCKGNDMINMI----KLD-FTPLTVECI  142 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~d~~i~i~d~~~~~~~~~~----~~~-~~~~~~~~~  142 (261)
                      .|..++. .++...... ......-+.+.++++. ...+.++-+..+.|..||+.....+...    ... ........+
T Consensus       154 ~v~~~~~-dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi  231 (314)
T d1pjxa_         154 SIYCFTT-DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEECT-TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             eEEEEee-cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceee
Confidence            3433333 333332222 1111233455555431 1112223367888998887644333221    111 112245678


Q ss_pred             EEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeecc
Q psy6859         143 HYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGY  212 (261)
Q Consensus       143 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~  212 (261)
                      ++..++.  ++++....+.|.+||.. .++.+..+. .....+++++|.|+++.| ++.+.+|.|..+++.
T Consensus       232 avD~~Gn--lyVa~~~~g~I~~~dp~-~g~~~~~i~-~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         232 DFDEDNN--LLVANWGSSHIEVFGPD-GGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEBTTCC--EEEEEETTTEEEEECTT-CBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEecCCc--EEEEEcCCCEEEEEeCC-CCEEEEEEE-CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            8999986  35666668899999987 677777775 555678999999999744 666778888887764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=6.3e-07  Score=64.41  Aligned_cols=178  Identities=12%  Similarity=0.148  Sum_probs=113.8

Q ss_pred             cCCCeEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccC--cceeEEEEe
Q psy6859          21 SNDGHIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDF--TPLTVECIH   97 (261)
Q Consensus        21 ~~d~~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--~~~~~~~~~   97 (261)
                      +.++.|..++...   .....+. ........+++.++++++++....+.+.+++. +++.+..+....  .....+.+.
T Consensus        90 ~~~~~i~~~~~~g---~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d  165 (279)
T d1q7fa_          90 SPTHQIQIYNQYG---QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVN  165 (279)
T ss_dssp             GGGCEEEEECTTS---CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEEC
T ss_pred             CCccccccccccc---cceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeec
Confidence            3445666665543   3333332 23345678899999988888777788888885 566666554222  223344555


Q ss_pred             ecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEec-CCCeEEEEEccCCCcccee
Q psy6859          98 YLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-DSSHVHIYDCKGNGTPLHV  176 (261)
Q Consensus        98 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~  176 (261)
                      ++++.+++-    ...+.|++||... +.+..+...........+++.+++..  +++.. .+..|.+|+.  +++.+..
T Consensus       166 ~~g~i~v~d----~~~~~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i--~Vad~~~~~~v~~f~~--~G~~~~~  236 (279)
T d1q7fa_         166 DKQEIFISD----NRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEI--LIADNHNNFNLTIFTQ--DGQLISA  236 (279)
T ss_dssp             SSSEEEEEE----GGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCE--EEEECSSSCEEEEECT--TSCEEEE
T ss_pred             cceeEEeee----ccccceeeeecCC-ceeeeecccccccCCcccccccCCeE--EEEECCCCcEEEEECC--CCCEEEE
Confidence            555433333    5678999999754 45555543333445688999999962  44433 3557999985  5777777


Q ss_pred             ecc-CcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         177 LDR-LHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       177 ~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      +.. ........|++.|+|++++ ++.+..|++|...
T Consensus       237 ~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~  272 (279)
T d1q7fa_         237 LESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYV  272 (279)
T ss_dssp             EEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECS
T ss_pred             EeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEee
Confidence            641 2234578999999997655 4578999999874

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4.2e-07  Score=70.23  Aligned_cols=140  Identities=9%  Similarity=-0.021  Sum_probs=88.3

Q ss_pred             EEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeec-cccceeEEEEeeCCCEEEEEe---------CCCcEEEEEccc
Q psy6859           9 VVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRS-HLGVIHSICTNYNGTLLCTVA---------SDKAMKVFDVIN   77 (261)
Q Consensus         9 ~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~---------~dg~v~~wd~~~   77 (261)
                      ..|.+ +.++ .-..+|.|.+|++.++..+.+..... ..-.+....|+||+++++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~-~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEE-EEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            35777 4444 34567899999998763332222111 223567888999999988763         356788999988


Q ss_pred             cceeeeeec--cCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCc----------------ceE
Q psy6859          78 FDMINMIKL--DFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTP----------------LTV  139 (261)
Q Consensus        78 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~----------------~~~  139 (261)
                      ++.......  .........++|+|+.++.+     .++.|.+.+..++..++........                ..-
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv-----~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI-----FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEE-----ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEE-----ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcccc
Confidence            765443222  22233446788999988776     5788888888776655443221111                012


Q ss_pred             EEEEEeCCCCceEEE
Q psy6859         140 ECIHYLGDAIPTAAV  154 (261)
Q Consensus       140 ~~~~~~~~~~~~~~~  154 (261)
                      ..+-|+||+.+++++
T Consensus       176 ~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         176 IAHWWSPDGTRLAYA  190 (465)
T ss_dssp             EEEEECTTSSEEEEE
T ss_pred             ceEEECCCCCeEEEE
Confidence            467799999985443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.82  E-value=6.5e-06  Score=60.18  Aligned_cols=160  Identities=9%  Similarity=-0.028  Sum_probs=97.4

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecC--CCCeEEEEEcCCC
Q psy6859          47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ--DSSRVHIYDCKGN  124 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~  124 (261)
                      -.+..++|.++|+++++-...+.|..|+...++....+.........+.+.++++.+++.  .+.  ..+.+...+....
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~--~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCY--LGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEE--CTTSSSCCEEEEECTTSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEe--cCCCccceeEEEEcCCCc
Confidence            345789999999977777788899999987665554443233334556677777644432  111  2344555565555


Q ss_pred             ceeeEEeecCCcceEEEEEEeCCCCceEEEEecC------CCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEE-
Q psy6859         125 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD------SSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVV-  197 (261)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-  197 (261)
                      .................+.+.+++..  .++...      .+.+..++.  .++.+..+. ..-...+.++|+|+++.| 
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l--~vtd~~~~~~~~~g~v~~~~~--dg~~~~~~~-~~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGF--YFTDFRGYSTNPLGGVYYVSP--DFRTVTPII-QNISVANGIALSTDEKVLW  192 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCE--EEEECCCBTTBCCEEEEEECT--TSCCEEEEE-EEESSEEEEEECTTSSEEE
T ss_pred             eeeeeccCCCcccCCcceeEEeccce--eecccccccccCcceeEEEec--ccceeEEEe-eccceeeeeeeccccceEE
Confidence            54444433233345678889999962  444321      223444444  344444443 333456889999999866 


Q ss_pred             EEEcCCCeEEEeeccc
Q psy6859         198 VSVDKAGILEYWSGYK  213 (261)
Q Consensus       198 ~~~~~dg~i~iwd~~~  213 (261)
                      ++-+..+.|..|++..
T Consensus       193 vad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         193 VTETTANRLHRIALED  208 (319)
T ss_dssp             EEEGGGTEEEEEEECT
T ss_pred             EecccCCceEEEEEcC
Confidence            5556788999998753

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.2e-05  Score=61.93  Aligned_cols=190  Identities=9%  Similarity=0.029  Sum_probs=110.6

Q ss_pred             CeEEEEEcC-CCeEEEe---------cCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           5 PITHVVVTK-TDFVITA---------SNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~---------~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      .+....||| +++++..         +..+.+.++|+.++....+.........+....|+|||+.+|-.. ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            456678999 7776654         345788899998864444433333445566789999999988764 56788888


Q ss_pred             ccccceeeeeeccC------------------cceeEEEEeecCCceeeeeeecC-------------------------
Q psy6859          75 VINFDMINMIKLDF------------------TPLTVECIHYLGDAIPTAAVSDQ-------------------------  111 (261)
Q Consensus        75 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~s~~-------------------------  111 (261)
                      ...+..++......                  ......+++|+++.++...+--+                         
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~  220 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence            77665544332111                  11246778999988876532100                         


Q ss_pred             ---C--CCeEEEEEcCCCceeeEEee----cCCcceEEEEEEeCCCCceEEEEecCC---CeEEEEEccCCCccceeecc
Q psy6859         112 ---D--SSRVHIYDCKGNDMINMIKL----DFTPLTVECIHYLGDAIPTAAVSDQDS---SHVHIYDCKGNGTPLHVLDR  179 (261)
Q Consensus       112 ---~--d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~~  179 (261)
                         .  ...+.++|+.++........    ......+..+.|.+++.. ++.....+   ..+.++|.. +++....+..
T Consensus       221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~-~~~~~nR~q~~~~i~~~d~~-tg~~~~~~~e  298 (465)
T d1xfda1         221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV-AVTWLNRAQNVSILTLCDAT-TGVCTKKHED  298 (465)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE-EEEEEETTSCEEEEEEEETT-TCCEEEEEEE
T ss_pred             cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeE-EEEEEccccccceEEEEcCC-CCcEEEEEEE
Confidence               0  12455667665533221111    111224677889888863 23332222   247788887 7765544431


Q ss_pred             CcccCe----EEEEEcCCCCEE
Q psy6859         180 LHTKPV----VLIKFNPIYQVV  197 (261)
Q Consensus       180 ~~~~~v----~~~~~~~~~~~l  197 (261)
                      .....|    ....|+|+|+.+
T Consensus       299 ~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         299 ESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             ECSSCCCCCCCCCEECTTSCSE
T ss_pred             cCCceEeccCCceeEccCCCee
Confidence            222222    345799999843

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.45  E-value=8.6e-05  Score=53.40  Aligned_cols=184  Identities=12%  Similarity=0.044  Sum_probs=115.5

Q ss_pred             CCeEEEEEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeecc--ccceeEEEEeeCCCEEEEEeC----CCcEEEEEcc
Q psy6859           4 SPITHVVVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSH--LGVIHSICTNYNGTLLCTVAS----DKAMKVFDVI   76 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~----dg~v~~wd~~   76 (261)
                      ..+.++++.+ +.+++ ++.+ .+.++|..++..+.+......  ...++.+.+.|+|++.++...    .+.-.+|.+.
T Consensus        59 ~~~~~i~~~~dg~l~v-a~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          59 FMGSALAKISDSKQLI-ASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             SCEEEEEEEETTEEEE-EETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCcEEEEEecCCCEEE-EEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec
Confidence            4567788877 55444 4554 577889887643433332221  235788999999987776542    2345677777


Q ss_pred             ccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCc------eeeEEeecCCcceEEEEEEeCCCCc
Q psy6859          77 NFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGND------MINMIKLDFTPLTVECIHYLGDAIP  150 (261)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  150 (261)
                      .++...... .........++++++.++..   -+..+.|..|++....      ................+++..++..
T Consensus       137 ~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~---dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gnl  212 (295)
T d2ghsa1         137 KGKVTKLFA-DISIPNSICFSPDGTTGYFV---DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI  212 (295)
T ss_dssp             TTEEEEEEE-EESSEEEEEECTTSCEEEEE---ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred             CCcEEEEee-ccCCcceeeecCCCceEEEe---ecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCE
Confidence            765544333 22233456667777655433   3678889988875321      1222233334456788899998862


Q ss_pred             eEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEc-CCCCEEE
Q psy6859         151 TAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFN-PIYQVVV  198 (261)
Q Consensus       151 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~  198 (261)
                        .++.-..+.|..||.  .++.+..+. .....+++++|- |+.+.|+
T Consensus       213 --Wva~~~~g~V~~~dp--~G~~~~~i~-lP~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         213 --WNARWGEGAVDRYDT--DGNHIARYE-VPGKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             --EEEEETTTEEEEECT--TCCEEEEEE-CSCSBEEEEEEESTTSCEEE
T ss_pred             --EeeeeCCCceEEecC--CCcEeeEec-CCCCceEEEEEeCCCCCEEE
Confidence              555445788999995  678888886 445678999996 6766553

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.28  E-value=7.4e-05  Score=55.55  Aligned_cols=90  Identities=7%  Similarity=-0.051  Sum_probs=59.5

Q ss_pred             cCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCC------------------CeEEEEEccCCC
Q psy6859         110 DQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDS------------------SHVHIYDCKGNG  171 (261)
Q Consensus       110 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------------------~~i~i~d~~~~~  171 (261)
                      ...+.+|.+.|+++.+..+.++.+. ...+..+...++.....++.++.+                  +.+.++|.. +.
T Consensus       106 Dkan~RVAvIdl~~fkt~kIi~iPn-~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~-tm  183 (459)
T d1fwxa2         106 DKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD-KW  183 (459)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETT-TT
T ss_pred             cCCCceEEEEECcceeeeEEEecCC-CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecC-Cc
Confidence            3568899999999998877766543 335566666554443335554432                  235678887 66


Q ss_pred             ccceeeccCcccCeEEEEEcCCCCEEEEEcCC
Q psy6859         172 TPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA  203 (261)
Q Consensus       172 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  203 (261)
                      +...++.  -......+.++|+|+++++.+.+
T Consensus       184 ~V~~QV~--V~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         184 EVAWQVL--VSGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             EEEEEEE--ESSCCCCEEECSSSSEEEEEESC
T ss_pred             eEEEEee--eCCChhccccCCCCCEEEEEecc
Confidence            6666664  33456778999999999877643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.20  E-value=0.00018  Score=50.85  Aligned_cols=88  Identities=14%  Similarity=0.073  Sum_probs=52.4

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC-CC-----cEEEEEccccceeeeeecc
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS-DK-----AMKVFDVINFDMINMIKLD   87 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg-----~v~~wd~~~~~~~~~~~~~   87 (261)
                      |+.++-.+ ++.|.+.++.++  +. +.+..+.+.+...+|+|||+.|+-... ++     .|.+++...++..+.....
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g--~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~   87 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSG--ST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFS   87 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTC--CE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCC
T ss_pred             CCEEEEEe-CCcEEEEECCCC--CE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecC
Confidence            55665443 456777788876  33 345556678899999999999886542 22     3677777666554322111


Q ss_pred             ------CcceeEEEEeecCCceee
Q psy6859          88 ------FTPLTVECIHYLGDAIPT  105 (261)
Q Consensus        88 ------~~~~~~~~~~~~~~~~~~  105 (261)
                            ........++++++.++.
T Consensus        88 ~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          88 GKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             EEEETTEECSEEEEECTTCCEEEE
T ss_pred             CCccCccccccccccCCCCCEEEE
Confidence                  011234456666665543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.97  E-value=0.00093  Score=49.64  Aligned_cols=193  Identities=10%  Similarity=0.060  Sum_probs=115.3

Q ss_pred             CCeEE-EecCCCeEEEEeccCCceeeeEEeeccccceeEEEEe--eCCCEEEEEeCCC------------------cEEE
Q psy6859          14 TDFVI-TASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTN--YNGTLLCTVASDK------------------AMKV   72 (261)
Q Consensus        14 ~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg------------------~v~~   72 (261)
                      |++|+ .-..++.|.+.|++......+..+. ....+..+...  |+..|++..+.+.                  .+..
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            34544 4557889999999887322233332 23445666654  4566777766532                  2567


Q ss_pred             EEccccceeeeeeccCcceeEEEEeecCCceeeeeeecC-----------C-----------------------CCeEEE
Q psy6859          73 FDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQ-----------D-----------------------SSRVHI  118 (261)
Q Consensus        73 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----------~-----------------------d~~i~i  118 (261)
                      .|..+.+...++..... ...+.++++++++++..+...           .                       -+.+.+
T Consensus       178 ID~~tm~V~~QV~V~g~-ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V  256 (459)
T d1fwxa2         178 VDADKWEVAWQVLVSGN-LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  256 (459)
T ss_dssp             EETTTTEEEEEEEESSC-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EecCCceEEEEeeeCCC-hhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence            88888887777766554 345677777776665422110           0                       022344


Q ss_pred             EEcCCC---ceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCc--------cceeec--cCcccCe
Q psy6859         119 YDCKGN---DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGT--------PLHVLD--RLHTKPV  185 (261)
Q Consensus       119 ~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--------~~~~~~--~~~~~~v  185 (261)
                      .|.+..   ..+..+....   ....+..+||+.+ +++++..+.++.++|++ .-.        +...+.  ....-..
T Consensus       257 VD~~~~~~~~v~~yIPVpK---sPHGV~vSPDGKy-i~VaGKLs~tVSViD~~-Ki~~~~~~~~~~~~~~~~e~elglgP  331 (459)
T d1fwxa2         257 VDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKH-LCVAGKLSPTVTVLDVT-RFDAVFYENADPRSAVVAEPELGLGP  331 (459)
T ss_dssp             EECSGG--CSSEEEEEEES---SCCCEEECTTSSE-EEEECTTSSBEEEEEGG-GHHHHHHSCC-GGGGEEECCBCCSCE
T ss_pred             ecccccCCcceeEEEecCC---CCCceEECCCCCE-EEEeCCcCCcEEEEEeh-hhhhhhcccCCccccEEeecccCcCc
Confidence            444321   1222333222   3457899999997 47888889999999996 211        111110  0123334


Q ss_pred             EEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         186 VLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       186 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ..-+|+..|.-..+---|..|.-|++..
T Consensus       332 Lht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         332 LHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cccccCCCceEEEEeeccceEEEEecch
Confidence            5668988886556666899999999853

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.88  E-value=0.0022  Score=47.46  Aligned_cols=72  Identities=14%  Similarity=0.102  Sum_probs=48.1

Q ss_pred             EEEEcC-CCeEEEecCC-CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCC------CcEEEEEccccc
Q psy6859           8 HVVVTK-TDFVITASND-GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASD------KAMKVFDVINFD   79 (261)
Q Consensus         8 ~~~~~~-~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~v~~wd~~~~~   79 (261)
                      ..++.+ +.+++.|+.+ ..+.+||..+........+.... .-..++..+|+++++.++.+      ..+.+||..+.+
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCccCcccccccccccc-cccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            456667 7788877655 58999999886444433333221 22456667899999988753      368899988765


Q ss_pred             e
Q psy6859          80 M   80 (261)
Q Consensus        80 ~   80 (261)
                      .
T Consensus       159 W  159 (387)
T d1k3ia3         159 W  159 (387)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.70  E-value=0.0005  Score=48.45  Aligned_cols=93  Identities=14%  Similarity=0.146  Sum_probs=57.3

Q ss_pred             EeCC--CCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEc-CC---C--eEEEeeccccc
Q psy6859         144 YLGD--AIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVD-KA---G--ILEYWSGYKQE  215 (261)
Q Consensus       144 ~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d---g--~i~iwd~~~~~  215 (261)
                      .+|+  +...++ +  .++.|.++|+. .++. +.+. .+...+...+|||||+.||... .+   .  .|.+++..++ 
T Consensus         6 ~sPdi~G~~v~f-~--~~~dl~~~d~~-~g~~-~~Lt-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g-   78 (281)
T d1k32a2           6 LNPDIHGDRIIF-V--CCDDLWEHDLK-SGST-RKIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG-   78 (281)
T ss_dssp             EEEEEETTEEEE-E--ETTEEEEEETT-TCCE-EEEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT-
T ss_pred             cCCCCCCCEEEE-E--eCCcEEEEECC-CCCE-EEEe-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC-
Confidence            3466  665333 3  25679999997 6654 4554 5677788999999999887543 22   2  3555555332 


Q ss_pred             ccCCeeeeeecccccceeecC-------CCccceeeeeECCCCceEEEee
Q psy6859         216 FKFPKCVHFESKLDTDLFEFA-------KNKTYPSGLSFSPDGNKFVTIS  258 (261)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~  258 (261)
                                    +. ..+.       ..........|+|||+.|+...
T Consensus        79 --------------~~-~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          79 --------------EI-KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             --------------EE-EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             --------------ce-EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence                          11 1121       1223456788999999988653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.019  Score=40.01  Aligned_cols=198  Identities=9%  Similarity=-0.053  Sum_probs=112.1

Q ss_pred             CeEEEEEcC-CCeE-EEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEE-EEeCCCcEEEEEcccccee
Q psy6859           5 PITHVVVTK-TDFV-ITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLC-TVASDKAMKVFDVINFDMI   81 (261)
Q Consensus         5 ~v~~~~~~~-~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~v~~wd~~~~~~~   81 (261)
                      .+.+|+|.+ .+.| .+-..++.|+..+++...  ....+......+.++++..-+..|. +-...+.|.+.++......
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~  114 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE
Confidence            356788887 5544 444667888888887652  2223333335678999987555555 4455678999998654332


Q ss_pred             eeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCe
Q psy6859          82 NMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSH  161 (261)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (261)
                      ..+.........+.+.+....++... .+.....|.--++...........  .-.....+++++.... ++.+-...+.
T Consensus       115 ~l~~~~l~~p~~l~vdp~~g~ly~t~-~~~~~~~I~r~~~dG~~~~~i~~~--~~~~P~glaiD~~~~~-lYw~d~~~~~  190 (263)
T d1npea_         115 VLFDTGLVNPRGIVTDPVRGNLYWTD-WNRDNPKIETSHMDGTNRRILAQD--NLGLPNGLTFDAFSSQ-LCWVDAGTHR  190 (263)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEE-CCSSSCEEEEEETTSCCCEEEECT--TCSCEEEEEEETTTTE-EEEEETTTTE
T ss_pred             EEecccccCCcEEEEecccCcEEEee-cCCCCcEEEEecCCCCCceeeeee--cccccceEEEeecCcE-EEEEeCCCCE
Confidence            22222223344556666665555431 112233455556665443332221  2235578899887764 3556566789


Q ss_pred             EEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecc
Q psy6859         162 VHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGY  212 (261)
Q Consensus       162 i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  212 (261)
                      |...|+. .......+. +.. ...+|++. ++.+..+-...+.|...|..
T Consensus       191 I~~~~~~-g~~~~~v~~-~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         191 AECLNPA-QPGRRKVLE-GLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             EEEEETT-EEEEEEEEE-CCC-SEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             EEEEECC-CCCeEEEEC-CCC-CcEEEEEE-CCEEEEEECCCCEEEEEECC
Confidence            9999986 333222332 322 34577775 33333444466778888764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.84  E-value=0.068  Score=41.69  Aligned_cols=61  Identities=7%  Similarity=-0.118  Sum_probs=38.3

Q ss_pred             CcEEEEEccccceeeeeeccCc---------ceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeE
Q psy6859          68 KAMKVFDVINFDMINMIKLDFT---------PLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINM  129 (261)
Q Consensus        68 g~v~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  129 (261)
                      ..+.-.|+++++.+..++...+         +.....+..++..... .+.++.+|.+.++|.++++++..
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~-v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL-LSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE-EEEECTTSEEEEEETTTCCEEEE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccc-eeeccccceEEEEecCCCcEeee
Confidence            3577789999998887764322         1122223334433222 23458999999999999987654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.70  E-value=0.051  Score=38.21  Aligned_cols=195  Identities=11%  Similarity=0.080  Sum_probs=110.5

Q ss_pred             EEcC-CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-ceeeeeecc
Q psy6859          10 VVTK-TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINF-DMINMIKLD   87 (261)
Q Consensus        10 ~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~   87 (261)
                      -.+| .+.||.-+ ..++.++|+++.  +.++.+.- ..+|.--.|-.+. .|+-... ..|+-|++... ++.+.+..+
T Consensus        69 IMhP~~~IiALra-g~~LQiFnletK--~klks~~~-~e~VvfWkWis~~-~L~lVT~-taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          69 IMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTT--EEEEEEEC-SSCCCEEEESSSS-EEEEECS-SEEEEEESSSSCCCEEEEECC
T ss_pred             hcCCCCcEEEEec-CCeEEEEehhHh--hhhceEEc-CCCcEEEEecCCC-EEEEEcC-CceEEEcccCCCCchhhhhhc
Confidence            3567 56666554 568999999987  66666663 3567666776544 5555543 47999999532 455555433


Q ss_pred             C----cceeEEEEeecCCceeeeeeecCC---CCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCc-eEEE---Ee
Q psy6859          88 F----TPLTVECIHYLGDAIPTAAVSDQD---SSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIP-TAAV---SD  156 (261)
Q Consensus        88 ~----~~~~~~~~~~~~~~~~~~~~s~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~  156 (261)
                      .    ..+-.....++.++++...++...   .|.+.+|..+.+. -+.++++  ......+....+... .+++   -+
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGh--aa~F~~~~~~g~~~~~~lf~fa~r~  219 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGH--AASFAQFKMEGNAEESTLFCFAVRG  219 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCS--EEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cccccce--eeeeEEEEcCCCCCCceEEEEEECC
Confidence            2    223333444566666666555322   3667889887652 3333332  111112211111100 0111   12


Q ss_pred             cCCCeEEEEEccCCCc--c---ceeec-----cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         157 QDSSHVHIYDCKGNGT--P---LHVLD-----RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       157 ~~d~~i~i~d~~~~~~--~---~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      ...+++++.++.....  +   .+..+     .....-..++..++....++.-+.-|.|.+||+++
T Consensus       220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleT  286 (327)
T d1utca2         220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET  286 (327)
T ss_dssp             TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred             CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccc
Confidence            2346899999862111  1   11111     12245567888998888888889999999999965

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.062  Score=37.28  Aligned_cols=182  Identities=12%  Similarity=0.061  Sum_probs=105.2

Q ss_pred             CeEEEEeccCCce---eeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEccccceeeeeeccCcceeEEEEeec
Q psy6859          24 GHIKFWKKQEEGI---EFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVINFDMINMIKLDFTPLTVECIHYL   99 (261)
Q Consensus        24 ~~i~iw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~   99 (261)
                      +.|+-.+++....   .....+..+...+.+++|.+..+.+.-+. .++.|+..++........+.........+++...
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            4666666654321   11222333445678899998766666554 5677888888654433333322223345566555


Q ss_pred             CCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCC--eEEEEEccCCCccceee
Q psy6859         100 GDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSS--HVHIYDCKGNGTPLHVL  177 (261)
Q Consensus       100 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~  177 (261)
                      ++.++..   -...+.|.+.++........+..  .......++.+|...++ +.+-...+  .|.-.++.  +.....+
T Consensus        90 ~~~lY~~---d~~~~~I~~~~~dg~~~~~l~~~--~l~~p~~l~vdp~~g~l-y~t~~~~~~~~I~r~~~d--G~~~~~i  161 (263)
T d1npea_          90 GRTIFWT---DSQLDRIEVAKMDGTQRRVLFDT--GLVNPRGIVTDPVRGNL-YWTDWNRDNPKIETSHMD--GTNRRIL  161 (263)
T ss_dssp             TTEEEEE---ETTTTEEEEEETTSCSCEEEECS--SCSSEEEEEEETTTTEE-EEEECCSSSCEEEEEETT--SCCCEEE
T ss_pred             CCeEEEe---ccCCCEEEEEecCCceEEEEecc--cccCCcEEEEecccCcE-EEeecCCCCcEEEEecCC--CCCceee
Confidence            5555443   25678999999887654333322  22356888999887653 33432223  34444554  3333333


Q ss_pred             ccCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeeccc
Q psy6859         178 DRLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYK  213 (261)
Q Consensus       178 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~  213 (261)
                      ....-....+|++++.++.|+.+ ...+.|...++..
T Consensus       162 ~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g  198 (263)
T d1npea_         162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ  198 (263)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC
Confidence            21233566899999888877554 5678898888854

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.082  Score=36.69  Aligned_cols=180  Identities=9%  Similarity=-0.037  Sum_probs=104.8

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEe-CCCcEEEEEccccc---eee-eeeccCcceeEEEEee
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVA-SDKAMKVFDVINFD---MIN-MIKLDFTPLTVECIHY   98 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~v~~wd~~~~~---~~~-~~~~~~~~~~~~~~~~   98 (261)
                      ..|+-.++++.....  .+. ....+.++.|++..+.|.-.. .++.|.-.++....   ... .+.........+++.+
T Consensus        10 ~~I~~~~l~~~~~~~--~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~   86 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTS--LIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW   86 (266)
T ss_dssp             SSEEEEETTSCCCEE--EEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred             CeEEEEECCCCccee--eeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEee
Confidence            458888888753222  233 445677899998777766654 45566666654221   111 1112222233456665


Q ss_pred             cCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec
Q psy6859          99 LGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD  178 (261)
Q Consensus        99 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  178 (261)
                      .++.++..   -...+.|.+.++........+...  ......++.+|...+++..-.+..+.|.-.++.  +.....+.
T Consensus        87 ~~~~lY~~---d~~~~~I~v~~~~g~~~~~~~~~~--~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d--Gs~~~~l~  159 (266)
T d1ijqa1          87 IHSNIYWT---DSVLGTVSVADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLV  159 (266)
T ss_dssp             TTTEEEEE---ETTTTEEEEEETTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEE
T ss_pred             ccceEEEE---ecCCCEEEeEecCCceEEEEEcCC--CCCcceEEEEcccCeEEEeccCCCcceeEeccC--CCceeccc
Confidence            56655543   256778999999877654444432  235678888887655433333445667777775  33333332


Q ss_pred             cCcccCeEEEEEcCCCCEEEEE-cCCCeEEEeeccc
Q psy6859         179 RLHTKPVVLIKFNPIYQVVVSV-DKAGILEYWSGYK  213 (261)
Q Consensus       179 ~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~  213 (261)
                      ...-...+++++++.++.|+.+ ...+.|...++..
T Consensus       160 ~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ccccceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence            1233567899999988766554 5678888888754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.11  Score=36.01  Aligned_cols=203  Identities=5%  Similarity=-0.060  Sum_probs=111.2

Q ss_pred             CCeEEEEEcC-CCeEE-EecCCCeEEEEeccCCc--eeeeEEeeccccceeEEEEeeCCCEEEEE-eCCCcEEEEEcccc
Q psy6859           4 SPITHVVVTK-TDFVI-TASNDGHIKFWKKQEEG--IEFVKHFRSHLGVIHSICTNYNGTLLCTV-ASDKAMKVFDVINF   78 (261)
Q Consensus         4 ~~v~~~~~~~-~~~l~-s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~v~~wd~~~~   78 (261)
                      ..+.+|+|.+ .+.|. +=..++.|.--+++...  ......+......+.++++.+.+..|..+ ...+.|.+.++...
T Consensus        30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~  109 (266)
T d1ijqa1          30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (266)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCc
Confidence            3466788887 55444 44456667666654321  01112222233456789998755555544 45678999998655


Q ss_pred             ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecC
Q psy6859          79 DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQD  158 (261)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (261)
                      .....+.........+.+.+....++...  .+..+.|.-.++...........  .......+++++.... ++.+-..
T Consensus       110 ~~~~~~~~~~~~P~~l~vd~~~g~ly~~~--~~~~~~I~r~~~dGs~~~~l~~~--~~~~p~gl~iD~~~~~-lYw~d~~  184 (266)
T d1ijqa1         110 KRKTLFRENGSKPRAIVVDPVHGFMYWTD--WGTPAKIKKGGLNGVDIYSLVTE--NIQWPNGITLDLLSGR-LYWVDSK  184 (266)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEE--CSSSCEEEEEETTSCCEEEEECS--SCSCEEEEEEETTTTE-EEEEETT
T ss_pred             eEEEEEcCCCCCcceEEEEcccCeEEEec--cCCCcceeEeccCCCceeccccc--ccceeeEEEeeccccE-EEEecCC
Confidence            44443333333344556666555554431  13445677777766544333322  2234578888887764 3566667


Q ss_pred             CCeEEEEEccCCCccceeec-cCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         159 SSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       159 d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      .+.|...++. .......+. ........+|++. ++.+..+-..++.|...+..+
T Consensus       185 ~~~I~~~~~d-G~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         185 LHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             TTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             cCEEEEEECC-CCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCC
Confidence            8899999986 332222221 0222345677776 333444445677777777543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.03  E-value=0.15  Score=36.71  Aligned_cols=159  Identities=11%  Similarity=0.060  Sum_probs=83.0

Q ss_pred             eeEEEEeeCCCEEEEEeC------------CCcEEEEEccccce-eeeeecc--------CcceeEEEE-eecCCceeee
Q psy6859          49 IHSICTNYNGTLLCTVAS------------DKAMKVFDVINFDM-INMIKLD--------FTPLTVECI-HYLGDAIPTA  106 (261)
Q Consensus        49 v~~~~~~~~~~~l~s~~~------------dg~v~~wd~~~~~~-~~~~~~~--------~~~~~~~~~-~~~~~~~~~~  106 (261)
                      .-.+...|+|..+++++.            .|.+.++|+.+.+. ...+...        ..|..+-.+ ..++...+.+
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            356777888877766542            48899999876532 2222211        122222111 2233322222


Q ss_pred             eeecCCCCeEEEEEcCCCce-ee---EEeecCCcceEEEEEEeCCCCceEEEEecC---------------CCeEEEEEc
Q psy6859         107 AVSDQDSSRVHIYDCKGNDM-IN---MIKLDFTPLTVECIHYLGDAIPTAAVSDQD---------------SSHVHIYDC  167 (261)
Q Consensus       107 ~~s~~~d~~i~i~d~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------d~~i~i~d~  167 (261)
                      .-......+|.+|++..... +.   .+... .......+...+++.  ++++-..               -+...+|..
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~-~~~~pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTE--EEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCc-cccCccceEEecCCC--EEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            11223566788888754322 11   12111 123456777777664  2555210               122334444


Q ss_pred             cCCCccceeeccCcccCeEEEEEcCCCCEE-EEEcCCCeEEEeeccc
Q psy6859         168 KGNGTPLHVLDRLHTKPVVLIKFNPIYQVV-VSVDKAGILEYWSGYK  213 (261)
Q Consensus       168 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~  213 (261)
                      . .++. .... ..-...+.|+++||+++| ++-...+.|+.|++..
T Consensus       194 ~-~~~~-~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         194 S-PNDV-RVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             C-SSCE-EEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             c-CCce-EEEc-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence            3 3222 2222 234567999999999877 4455778899999864

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.03  E-value=0.074  Score=39.81  Aligned_cols=106  Identities=14%  Similarity=0.065  Sum_probs=61.2

Q ss_pred             eEEEEEEeCCCCceEEE---EecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCC-----------
Q psy6859         138 TVECIHYLGDAIPTAAV---SDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKA-----------  203 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~---~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------  203 (261)
                      .+..+.++|++.++++.   .|++...++++|+. +++.+...  ........+.|.+|++.|+-...+           
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~-tg~~~~~~--i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD-GAKELPDV--LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT-TTEEEEEE--EEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccC-cceecccc--cccccccceEEcCCCCEEEEEEeccccCccccccc
Confidence            34556788999864322   13444569999999 88765422  112223568999999977543322           


Q ss_pred             -----CeEEEeecccccccCCeeeeeecccccceeecCCCccceeeeeECCCCceEEEe
Q psy6859         204 -----GILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNKTYPSGLSFSPDGNKFVTI  257 (261)
Q Consensus       204 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  257 (261)
                           ..+..+.+.+..           .....+.........+..+..++++++|+..
T Consensus       203 ~~~~~~~v~~h~lgt~~-----------~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQ-----------SEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCCCEEEEEETTSCG-----------GGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             ccCCcceEEEEECCCCc-----------cccccccccccCCceEEeeeccCCcceeeEE
Confidence                 246666664321           1122233322233456677889999987654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.00  E-value=0.24  Score=38.58  Aligned_cols=81  Identities=9%  Similarity=0.042  Sum_probs=47.0

Q ss_pred             cEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCCC
Q psy6859          69 AMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGDA  148 (261)
Q Consensus        69 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (261)
                      .+.-||+.+++.+.+.+..... ..-.+.-.+..++    .|+.|+.++.+|.++++.+-.+....... -.-+.|.-++
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~-~gg~lstagglVF----~G~~dg~l~A~Da~TGe~LW~~~~~~~~~-~~P~ty~~~G  531 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPW-NGGTLTTAGNVVF----QGTADGRLVAYHAATGEKLWEAPTGTGVV-AAPSTYMVDG  531 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEE----EECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEETT
T ss_pred             cEEEeCCCCCceEeeecCCCCC-CCceEEEcCCEEE----EECCCCeEEEEECCCCcEeEEEECCCCcc-ccCEEEEECC
Confidence            4666777777776665533221 1112222344443    35899999999999999998887653211 1124444566


Q ss_pred             CceEEEE
Q psy6859         149 IPTAAVS  155 (261)
Q Consensus       149 ~~~~~~~  155 (261)
                      +..+++.
T Consensus       532 kQYv~v~  538 (573)
T d1kb0a2         532 RQYVSVA  538 (573)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5443443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.81  E-value=0.3  Score=38.20  Aligned_cols=51  Identities=12%  Similarity=-0.018  Sum_probs=33.3

Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeeccc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  213 (261)
                      |.|.-||+. +++.+.+..  +..+..+=.++-.+.+++.|+.||.++-+|.++
T Consensus       453 G~l~A~D~~-TG~~~W~~~--~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~T  503 (596)
T d1w6sa_         453 GQIKAYNAI-TGDYKWEKM--ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDT  503 (596)
T ss_dssp             EEEEEECTT-TCCEEEEEE--ESSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ceEEEEeCC-CCceecccC--CCCCCccceeEecCCEEEEECCCCeEEEEECCC
Confidence            467777777 777665553  222222222334567888899999999999954

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.73  E-value=0.22  Score=36.16  Aligned_cols=112  Identities=12%  Similarity=0.061  Sum_probs=63.4

Q ss_pred             CCeEEEecCCC-----------eEEEEeccCCceeeeEEee-ccccceeEEEEeeCCCEEEEEeCC-CcEEEEEccccce
Q psy6859          14 TDFVITASNDG-----------HIKFWKKQEEGIEFVKHFR-SHLGVIHSICTNYNGTLLCTVASD-KAMKVFDVINFDM   80 (261)
Q Consensus        14 ~~~l~s~~~d~-----------~i~iw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d-g~v~~wd~~~~~~   80 (261)
                      ++.++.|+.+.           .+.+||..++......... .|.......++.+++++++.|+.+ ..+.+||..+.+.
T Consensus        31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w  110 (387)
T d1k3ia3          31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW  110 (387)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE
T ss_pred             CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcc
Confidence            66677666421           3678998876443333322 232334566788999999988765 5899999988765


Q ss_pred             eeeeeccCcc-eeEEEEeecCCceeeeeee--cCCCCeEEEEEcCCCc
Q psy6859          81 INMIKLDFTP-LTVECIHYLGDAIPTAAVS--DQDSSRVHIYDCKGND  125 (261)
Q Consensus        81 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s--~~~d~~i~i~d~~~~~  125 (261)
                      ...-...... ........++..++...-.  +..-..+.+||+.+.+
T Consensus       111 ~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         111 IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            4432222221 2233444455433332000  0112468999988765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.60  E-value=0.35  Score=37.49  Aligned_cols=52  Identities=12%  Similarity=-0.006  Sum_probs=35.2

Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQ  214 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  214 (261)
                      |.+.-+|+. +++.+.+++  ...+..+-.+.-.+.+++.++.||.++-+|.+++
T Consensus       438 G~l~A~D~~-tGk~~W~~~--~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tG  489 (560)
T d1kv9a2         438 GALLAWDPV-KQKAAWKVP--YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG  489 (560)
T ss_dssp             EEEEEEETT-TTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             cceEEEeCC-CCeEeeecc--CCCCCCCceeEECCCEEEEECCCCcEEEEECCCC
Confidence            567788887 787777664  2222222223345667888999999999999653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.58  E-value=0.25  Score=35.70  Aligned_cols=154  Identities=12%  Similarity=0.152  Sum_probs=88.4

Q ss_pred             eCCCEEEEEeCCCcEEEEEccccceeeeeeccCc-ceeEEE-EeecCCceeeeeeecCC--CCeEEEEEcCC-CceeeEE
Q psy6859          56 YNGTLLCTVASDKAMKVFDVINFDMINMIKLDFT-PLTVEC-IHYLGDAIPTAAVSDQD--SSRVHIYDCKG-NDMINMI  130 (261)
Q Consensus        56 ~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~s~~~--d~~i~i~d~~~-~~~~~~~  130 (261)
                      |+..+++...+++-|.+||+ +|+.+..+....- .+.+.. +...+.....++++.-.  ...|.+|.+.. ...+..+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEET-TCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             cCccEEEEEcCcCCEEEEcC-CCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            45567887788878999998 5888877653221 111111 11233333223333223  24677887753 2233333


Q ss_pred             eecCCc-------ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCC--C----ccceeeccCcccCeEEEEEcCCCCEE
Q psy6859         131 KLDFTP-------LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGN--G----TPLHVLDRLHTKPVVLIKFNPIYQVV  197 (261)
Q Consensus       131 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~----~~~~~~~~~~~~~v~~~~~~~~~~~l  197 (261)
                      .....+       ..-.|+-.++......++....+|.+..|.+...  +    ++++.+.  ....+..+.+++....|
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~--~~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK--MNSQTEGMAADDEYGSL  194 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE--CSSCEEEEEEETTTTEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC--CCCccceEEEeCCCCcE
Confidence            221111       1233444466544344666677899998877422  2    3455663  45678999999999999


Q ss_pred             EEEcCCCeEEEeecc
Q psy6859         198 VSVDKAGILEYWSGY  212 (261)
Q Consensus       198 ~~~~~dg~i~iwd~~  212 (261)
                      +.+-++..+..++..
T Consensus       195 yisEE~~Giw~~~a~  209 (353)
T d1h6la_         195 YIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEEETTTEEEEEESS
T ss_pred             EEecCccceEEEEec
Confidence            999887766555543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.50  E-value=0.38  Score=37.27  Aligned_cols=82  Identities=7%  Similarity=0.044  Sum_probs=50.2

Q ss_pred             CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC
Q psy6859          68 KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        68 g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                      |.+.-||+.+++.+.+......... -.+.-.+..++    .|+.|+.++-+|.++++.+-.++..... .-.-+.|.-+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~g-g~l~TagglVF----~G~~dg~l~A~Da~tGe~LW~~~l~~~~-~~~P~ty~~d  511 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNG-GTLSTAGNLVF----QGTAAGQMHAYSADKGEALWQFEAQSGI-VAAPMTFELA  511 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCC-CEEEETTTEEE----EECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEET
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCC-ceeEECCCEEE----EECCCCcEEEEECCCCcEeEEEECCCCc-cccCEEEEEC
Confidence            4677788888888777664433211 12222344443    3589999999999999999888765422 1122455556


Q ss_pred             CCceEEEE
Q psy6859         148 AIPTAAVS  155 (261)
Q Consensus       148 ~~~~~~~~  155 (261)
                      ++..+++.
T Consensus       512 Gkqyv~v~  519 (560)
T d1kv9a2         512 GRQYVAIM  519 (560)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
Confidence            65443433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.33  E-value=0.45  Score=37.05  Aligned_cols=82  Identities=10%  Similarity=0.094  Sum_probs=50.8

Q ss_pred             CcEEEEEccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecCCcceEEEEEEeCC
Q psy6859          68 KAMKVFDVINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        68 g~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                      |.+.-+|+.+++.+.+...+... ..-.+.-.+..+    |.|+.|+.++-+|.++++.+-.++..... .-.-+.|..+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~-~~g~lstagglV----F~Gt~dg~l~A~Da~TGe~LW~~~~~~~~-~~~P~ty~~~  539 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPL-WAGVLATAGNLV----FTGTGDGYFKAFDAKSGKELWKFQTGSGI-VSPPITWEQD  539 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCC-CSCCEEETTTEE----EEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEET
T ss_pred             CeEEEEcCCCCcEEeecCCCCCC-ccceeEEcCCeE----EEeCCCCeEEEEECCCCcEeEEEECCCCc-cccCEEEEEC
Confidence            56777888888877776643321 111222334433    34589999999999999999888865432 2223556667


Q ss_pred             CCceEEEE
Q psy6859         148 AIPTAAVS  155 (261)
Q Consensus       148 ~~~~~~~~  155 (261)
                      ++..+++.
T Consensus       540 G~qYv~i~  547 (582)
T d1flga_         540 GEQYLGVT  547 (582)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
Confidence            75444443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.96  E-value=0.59  Score=36.37  Aligned_cols=79  Identities=11%  Similarity=0.191  Sum_probs=48.7

Q ss_pred             CeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEEEeecccccccCCeeeeeecccccceeecCCCc
Q psy6859         160 SHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILEYWSGYKQEFKFPKCVHFESKLDTDLFEFAKNK  239 (261)
Q Consensus       160 ~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (261)
                      |.|.-+|+. +++.+.+.+  ...++.+=.++..+.++++|+.||.++-+|.++               ++.+.+++-..
T Consensus       466 G~l~AiD~~-TG~i~W~~~--~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~T---------------Ge~LW~~~~~~  527 (582)
T d1flga_         466 GSLRAMDPV-SGKVVWEHK--EHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKS---------------GKELWKFQTGS  527 (582)
T ss_dssp             EEEEEECTT-TCCEEEEEE--ESSCCCSCCEEETTTEEEEECTTSEEEEEETTT---------------CCEEEEEECSS
T ss_pred             CeEEEEcCC-CCcEEeecC--CCCCCccceeEEcCCeEEEeCCCCeEEEEECCC---------------CcEeEEEECCC
Confidence            567778887 777777765  222332222345667888899999999999954               66665554311


Q ss_pred             cc-eeeeeECCCCc-eEEE
Q psy6859         240 TY-PSGLSFSPDGN-KFVT  256 (261)
Q Consensus       240 ~~-v~~~~~s~~~~-~l~s  256 (261)
                      .. -.-+.|..+|+ |++.
T Consensus       528 ~~~~~P~ty~~~G~qYv~i  546 (582)
T d1flga_         528 GIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             CCCSCCEEEEETTEEEEEE
T ss_pred             CccccCEEEEECCEEEEEE
Confidence            11 11256667885 4443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.89  E-value=0.6  Score=36.20  Aligned_cols=157  Identities=6%  Similarity=-0.091  Sum_probs=83.6

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeecc---c-cceeEEEEeeCCCEEEEEe------CCCcEEEEEccccceeeee
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSH---L-GVIHSICTNYNGTLLCTVA------SDKAMKVFDVINFDMINMI   84 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~-~~v~~~~~~~~~~~l~s~~------~dg~v~~wd~~~~~~~~~~   84 (261)
                      ..++.++.|+.+.-.|.+++  +........   . ..++.--.-.++ .++.+.      .+|.|+-+|+.+|+.+..+
T Consensus       116 ~~i~~~~~~g~l~alda~tG--~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTG--KINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTC--CEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhh--hhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence            45667788898888888887  443333211   1 112221122244 344444      3678999999999988765


Q ss_pred             eccCcc-------------------------------------e-eEEEEeecCCceeeeeee----------cC--CCC
Q psy6859          85 KLDFTP-------------------------------------L-TVECIHYLGDAIPTAAVS----------DQ--DSS  114 (261)
Q Consensus        85 ~~~~~~-------------------------------------~-~~~~~~~~~~~~~~~~~s----------~~--~d~  114 (261)
                      ......                                     . ....+.+....+....-.          +.  ...
T Consensus       193 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~  272 (571)
T d2ad6a1         193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             eccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccc
Confidence            422110                                     0 111222222222211000          00  135


Q ss_pred             eEEEEEcCCCceeeEEeecCCc---------ceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcccee
Q psy6859         115 RVHIYDCKGNDMINMIKLDFTP---------LTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHV  176 (261)
Q Consensus       115 ~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  176 (261)
                      .+.-.|+++++.+-.++...+.         .....+...... ..+++..+.+|.++++|.. +++++..
T Consensus       273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~-~~~v~~~~k~G~l~vlDr~-tG~~i~~  341 (571)
T d2ad6a1         273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKM-TPLLSHIDRNGILYTLNRE-NGNLIVA  341 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEE-EEEEEEECTTSEEEEEETT-TCCEEEE
T ss_pred             ceeeeeccchhheecccccCccccccccccccceeeeeccCcc-ccceeeccccceEEEEecC-CCcEeee
Confidence            6778899999887766643221         112222222222 2346677889999999988 8877643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.51  E-value=0.34  Score=37.69  Aligned_cols=80  Identities=6%  Similarity=0.026  Sum_probs=52.2

Q ss_pred             CeEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEEccccceeeeeeccCcce-eEEEEeecCCc
Q psy6859          24 GHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFDVINFDMINMIKLDFTPL-TVECIHYLGDA  102 (261)
Q Consensus        24 ~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  102 (261)
                      |.+.-||+.++  +.+...+.. .+...=..+..+.++++++.||.++.+|.++|+.+.++....... ..+.+..++++
T Consensus       457 G~l~AiD~~tG--k~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQ--KAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTT--EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeCCCCC--ceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            46788888887  555555422 222222234467789899999999999999999999988654322 22333456655


Q ss_pred             eeee
Q psy6859         103 IPTA  106 (261)
Q Consensus       103 ~~~~  106 (261)
                      .+++
T Consensus       534 Yv~v  537 (573)
T d1kb0a2         534 YVSV  537 (573)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5444

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.46  Score=32.73  Aligned_cols=56  Identities=7%  Similarity=0.076  Sum_probs=29.9

Q ss_pred             eEEEEeccCCceeeeEEeeccccceeEEEEeeCCCEEEEEeC---------CCcEEEEEccccceee
Q psy6859          25 HIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGTLLCTVAS---------DKAMKVFDVINFDMIN   82 (261)
Q Consensus        25 ~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---------dg~v~~wd~~~~~~~~   82 (261)
                      .+.+||+++.....+..+...... .+++ .-+++.++.|+.         -..+.+||..+.+...
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~   84 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSG-LAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP   84 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE
T ss_pred             eEEEEECCCCeEEECCCCCCccce-eEEE-EECCEEEEEeCcccCCCCccccchhhhcccccccccc
Confidence            577999988755444444322211 1222 235556666653         1356778877655443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.39  E-value=0.39  Score=31.83  Aligned_cols=144  Identities=15%  Similarity=0.227  Sum_probs=69.0

Q ss_pred             CCeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEeeCCC--EEEEE------eCCCcEEEEEccccceeeeee
Q psy6859          14 TDFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNYNGT--LLCTV------ASDKAMKVFDVINFDMINMIK   85 (261)
Q Consensus        14 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~------~~dg~v~~wd~~~~~~~~~~~   85 (261)
                      +++++.+...|.+.++-+...  +.++ +  ...+|.... .|...  ++.-+      -.-..+.+-++..  .-.+++
T Consensus        26 d~ll~~~~seG~vni~~l~g~--~~vk-L--tkePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~--~GEE~~   97 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGG--ETVK-L--NREPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSR--PGEEQR   97 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSS--SCEE-C--CSSCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTS--TTCEEE
T ss_pred             CcEEEEEeccceEEEEEEeCC--EEEE-E--ecccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCC--CCeeeE
Confidence            447888888899999888765  2222 1  123333221 12111  11111      0111233333321  111222


Q ss_pred             cc-CcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeecC-------CcceEEEEEEeCCCCceEEEEec
Q psy6859          86 LD-FTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLDF-------TPLTVECIHYLGDAIPTAAVSDQ  157 (261)
Q Consensus        86 ~~-~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  157 (261)
                      .. ..++.+.....+++.++   |+|+......+|-++.++.......+.       ....|..+.+-..+...++++.-
T Consensus        98 i~spk~vRI~S~~yddk~vv---F~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl  174 (313)
T d2hu7a1          98 LEAVKPMRILSGVDTGEAVV---FTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNL  174 (313)
T ss_dssp             CTTSCSBEEEEEEECSSCEE---EEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred             ecCCceEEEEEeeecCceEE---EecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEec
Confidence            22 23467777777777544   456777888899888887554443321       12234444443333333333333


Q ss_pred             CCCeEEEEEcc
Q psy6859         158 DSSHVHIYDCK  168 (261)
Q Consensus       158 ~d~~i~i~d~~  168 (261)
                      ..|.+++++..
T Consensus       175 ~SG~lri~tpk  185 (313)
T d2hu7a1         175 SSGGLRVFDSG  185 (313)
T ss_dssp             TTEEEEEECCS
T ss_pred             ccCCEEEecCC
Confidence            34555555543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.99  E-value=0.49  Score=31.39  Aligned_cols=154  Identities=14%  Similarity=0.175  Sum_probs=94.2

Q ss_pred             CeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeecc-------ccceeEEEEe-eCCCEEEEEeC-CCcEEEEEc
Q psy6859           5 PITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSH-------LGVIHSICTN-YNGTLLCTVAS-DKAMKVFDV   75 (261)
Q Consensus         5 ~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~-------~~~v~~~~~~-~~~~~l~s~~~-dg~v~~wd~   75 (261)
                      .|.++++...+..++|+......+|-++.+..+.+..+.+.       .+-|..+.+- ++.+-++++.. .|.+++++.
T Consensus       105 RI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tp  184 (313)
T d2hu7a1         105 RILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS  184 (313)
T ss_dssp             EEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECC
T ss_pred             EEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecC
Confidence            46677776667888998888899999998766655555432       2335555553 23334566665 788888888


Q ss_pred             cccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEeec------CCcceEEEEEEeCCCC
Q psy6859          76 INFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKLD------FTPLTVECIHYLGDAI  149 (261)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  149 (261)
                      ..|.....+......+            .+..-+.+...-| -+|+++++... ++.+      ..+..+..+-+.|++.
T Consensus       185 keGS~~~ay~~~gnKV------------~sdyEt~gEsywi-t~D~~s~~yer-ve~P~kd~~sy~p~~I~~~~Y~Pdd~  250 (313)
T d2hu7a1         185 GEGSFSSASISPGMKV------------TAGLETAREARLV-TVDPRDGSVED-LELPSKDFSSYRPTAITWLGYLPDGR  250 (313)
T ss_dssp             SSEEEEEEEECTTSCE------------EEEEEESSCEEEE-EECTTTCCEEE-CCCSSCHHHHHCCSEEEEEEECTTSC
T ss_pred             CCCcccceeEccCcee------------eeccCCCCceEEE-EEecccCceee-eecCcccceeecceEEEeeeeCCCCc
Confidence            7776555444333332            1211111222333 45777664322 2211      2456788899999997


Q ss_pred             ceEEEEecCCCeEEEEEccCCCccceee
Q psy6859         150 PTAAVSDQDSSHVHIYDCKGNGTPLHVL  177 (261)
Q Consensus       150 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~  177 (261)
                      .  ++.+-.||.-++|.   +++.+..-
T Consensus       251 L--~iiakrdG~s~lF~---nGk~in~p  273 (313)
T d2hu7a1         251 L--AVVARREGRSAVFI---DGERVEAP  273 (313)
T ss_dssp             E--EEEEEETTEEEEEE---TTEEECCC
T ss_pred             E--EEEEecCCchheee---cceEecCC
Confidence            3  56667799999987   55665544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.87  E-value=0.79  Score=33.39  Aligned_cols=138  Identities=8%  Similarity=0.053  Sum_probs=76.6

Q ss_pred             cceeEEEEeeCCCEEEEEeCCCcEEEEEcccc-----------ceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCe
Q psy6859          47 GVIHSICTNYNGTLLCTVASDKAMKVFDVINF-----------DMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSR  115 (261)
Q Consensus        47 ~~v~~~~~~~~~~~l~s~~~dg~v~~wd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~  115 (261)
                      ....-++.++...+++.|+.++ +++.....-           ........  ..+..+.+  +++.++.     ..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i--p~v~~vaf--s~d~l~v-----~~~~~  106 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI--PDVIFVCF--HGDQVLV-----STRNA  106 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC--TTEEEEEE--ETTEEEE-----EESSE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC--CCeEEEEe--eCCEEEE-----EeCCC
Confidence            3456788888766888888774 667764321           11111111  12333333  3444333     24567


Q ss_pred             EEEEEcCCCceeeEEeecCCcceEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec----cCcccCeEEEEEc
Q psy6859         116 VHIYDCKGNDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD----RLHTKPVVLIKFN  191 (261)
Q Consensus       116 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~v~~~~~~  191 (261)
                      +..++...-........  ....+..+.++|..    ++....++.+.++++. .++......    ..-...+.+++|+
T Consensus       107 l~~~~~~~l~~~~~~~~--~~~~~~~~~~~p~~----~~l~~~~~~~~~~~l~-~~~~~~~~~~v~~~~~~~~~~~v~ws  179 (381)
T d1xipa_         107 LYSLDLEELSEFRTVTS--FEKPVFQLKNVNNT----LVILNSVNDLSALDLR-TKSTKQLAQNVTSFDVTNSQLAVLLK  179 (381)
T ss_dssp             EEEEESSSTTCEEEEEE--CSSCEEEEEECSSE----EEEEETTSEEEEEETT-TCCEEEEEESEEEEEECSSEEEEEET
T ss_pred             EEEEEeecccccccccc--ccccccceecCCce----eEEEecCCCEEEEEec-cCccccccCCcceEEecCCceEEEEe
Confidence            77787766433333222  22356788888865    3344458999999998 553322111    0123556777888


Q ss_pred             CCCCEEEEEc
Q psy6859         192 PIYQVVVSVD  201 (261)
Q Consensus       192 ~~~~~l~~~~  201 (261)
                      +.|..++++.
T Consensus       180 ~kgkq~v~~~  189 (381)
T d1xipa_         180 DRSFQSFAWR  189 (381)
T ss_dssp             TSCEEEEEEE
T ss_pred             CCcEEEEEeC
Confidence            7777776663

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.79  E-value=1.4  Score=30.86  Aligned_cols=194  Identities=15%  Similarity=0.151  Sum_probs=110.2

Q ss_pred             CeEEEEEcCCCeEEEecCCCeEEEEeccCCceeeeEEeeccc----cceeEEEEeeCCCEEEEEe---C----CCcEEEE
Q psy6859           5 PITHVVVTKTDFVITASNDGHIKFWKKQEEGIEFVKHFRSHL----GVIHSICTNYNGTLLCTVA---S----DKAMKVF   73 (261)
Q Consensus         5 ~v~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~---~----dg~v~~w   73 (261)
                      +|.--.|-..+.|+-... ..|.-|+++... .+.+.+.-|.    ..|..-..+++.++++..+   .    .|.+.+|
T Consensus       104 ~VvfWkWis~~~L~lVT~-taVYHW~~~g~s-~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLY  181 (327)
T d1utca2         104 DVTFWKWISLNTVALVTD-NAVYHWSMEGES-QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY  181 (327)
T ss_dssp             CCCEEEESSSSEEEEECS-SEEEEEESSSSC-CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CcEEEEecCCCEEEEEcC-CceEEEcccCCC-CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEE
Confidence            444445555455655554 589999996533 5677776554    3566777788888877654   2    2567888


Q ss_pred             EccccceeeeeeccCcceeEEEEeecCC----ceeeeeeecCCCCeEEEEEcCCCc------eeeEEeecCC----cceE
Q psy6859          74 DVINFDMINMIKLDFTPLTVECIHYLGD----AIPTAAVSDQDSSRVHIYDCKGND------MINMIKLDFT----PLTV  139 (261)
Q Consensus        74 d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~d~~i~i~d~~~~~------~~~~~~~~~~----~~~~  139 (261)
                      ..+.+ .-+.++  .+......+..+++    .+++.+.-+...+.+++.++....      ..+.......    ..-.
T Consensus       182 S~er~-~sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFP  258 (327)
T d1utca2         182 SVDRK-VSQPIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP  258 (327)
T ss_dssp             ETTTT-EEEEEC--CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCE
T ss_pred             EeccC-cCcccc--ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcE
Confidence            87543 222222  22222222222222    233332233455789999886521      1222222222    2345


Q ss_pred             EEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeeccCcccCeEEEEEcCCCCEEEEEcCCCeEE
Q psy6859         140 ECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSVDKAGILE  207 (261)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  207 (261)
                      .++..++....  +..-+.-|.+++||+. ++.++..-+ -...+|-..+-..+..-++....+|.|.
T Consensus       259 vamqvs~kygi--iyviTK~G~i~lyDle-Tgt~i~~nR-Is~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         259 VAMQISEKHDV--VFLITKYGYIHLYDLE-TGTCIYMNR-ISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEETTTTE--EEEEETTSEEEEEETT-TCCEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEeeccCCE--EEEEecCcEEEEEEcc-cccEEEEee-cCCCceEEeccCCCCceEEEECCCCeEE
Confidence            67888877764  3334568999999999 998887665 5556665444444444444445666654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.48  E-value=2.1  Score=30.52  Aligned_cols=60  Identities=17%  Similarity=0.163  Sum_probs=37.6

Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCccceeec-cCcccCeEEEEEcCC-CCEEEE
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTPLHVLD-RLHTKPVVLIKFNPI-YQVVVS  199 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~  199 (261)
                      ....++++|++.+ ++++.+..++|+.|++. ....+.... ..-...+-.+.+.++ |.+.+.
T Consensus       207 ~pNGI~~s~d~~~-lyVa~t~~~~i~~y~~~-~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         207 FANGINISPDGKY-VYIAELLAHKIHVYEKH-ANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             SEEEEEECTTSSE-EEEEEGGGTEEEEEEEC-TTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             ccceeEECCCCCE-EEEEeCCCCeEEEEEeC-CCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            4578999999985 46677778999999997 333222111 023344566788764 444333

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.10  E-value=3.3  Score=32.14  Aligned_cols=157  Identities=8%  Similarity=-0.068  Sum_probs=85.2

Q ss_pred             eEEEecCCCeEEEEeccCCceeeeEEeeccc----cceeEEEEeeCCCEEEEEeC------CCcEEEEEccccceeeeee
Q psy6859          16 FVITASNDGHIKFWKKQEEGIEFVKHFRSHL----GVIHSICTNYNGTLLCTVAS------DKAMKVFDVINFDMINMIK   85 (261)
Q Consensus        16 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~------dg~v~~wd~~~~~~~~~~~   85 (261)
                      +++.++.|+.|.-.|.+++  +.+..+....    ..++.--.--++ .++.+..      .|.|+-+|+.+|+++..+.
T Consensus       123 ~v~~~t~dg~l~Alda~tG--~~~w~~~~~d~~~~~~~t~~P~v~~~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         123 LILKTQLDGNVAALNAETG--ETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             EEEEECTTSEEEEEETTTC--CEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEeCCCCeEeeccccC--ceeccccccccccccccccCCcEECC-eEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            5788899999988898887  5555443211    112211111133 4555543      4889999999999887654


Q ss_pred             ccCc--------------------------------------ceeEEEEeecCCceeeeeeec---------C---CCCe
Q psy6859          86 LDFT--------------------------------------PLTVECIHYLGDAIPTAAVSD---------Q---DSSR  115 (261)
Q Consensus        86 ~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~s~---------~---~d~~  115 (261)
                      ....                                      .-....+.+..+.++...-.+         .   ....
T Consensus       200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~s  279 (596)
T d1w6sa_         200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (596)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccc
Confidence            2110                                      001112222222222210000         0   1345


Q ss_pred             EEEEEcCCCceeeEEeecCCc-------ceEEEEEE-eCCCC-ceEEEEecCCCeEEEEEccCCCcccee
Q psy6859         116 VHIYDCKGNDMINMIKLDFTP-------LTVECIHY-LGDAI-PTAAVSDQDSSHVHIYDCKGNGTPLHV  176 (261)
Q Consensus       116 i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~  176 (261)
                      +.-.|+++++.+-.++...+.       ....-+.. ..++. ..+++....+|.+.++|.. +++++..
T Consensus       280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~-tG~~i~~  348 (596)
T d1w6sa_         280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRT-DGALVSA  348 (596)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETT-TCCEEEE
T ss_pred             ccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCC-CCceeee
Confidence            778899999887766543221       11112221 22322 2346778889999999988 8877643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.07  E-value=3.4  Score=29.61  Aligned_cols=187  Identities=7%  Similarity=0.102  Sum_probs=99.6

Q ss_pred             CeEEEecCCCeEEEEeccCCceeeeEEeeccccceeEEEEee----C--CCEEEEEe-CC---CcEEEEEccc-cceeee
Q psy6859          15 DFVITASNDGHIKFWKKQEEGIEFVKHFRSHLGVIHSICTNY----N--GTLLCTVA-SD---KAMKVFDVIN-FDMINM   83 (261)
Q Consensus        15 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~v~~~~~~~----~--~~~l~s~~-~d---g~v~~wd~~~-~~~~~~   83 (261)
                      .+++.....+-|.+||++.   +.+..+.  .+.++.+..-.    +  ..-++.++ ++   .+|.+|.+.. ...+..
T Consensus        41 SlI~gTdK~~Gl~vYdL~G---~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLEG---KMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             CEEEEEETTSCCEEEETTC---CEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cEEEEEcCcCCEEEEcCCC---cEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            5677667777899999975   3444443  24555554432    2  22344444 32   3688888752 223333


Q ss_pred             eeccCc-------ceeEEEE--eecCCceeeeeeecCCCCeEEEEEcC---CCc----eeeEEeecCCcceEEEEEEeCC
Q psy6859          84 IKLDFT-------PLTVECI--HYLGDAIPTAAVSDQDSSRVHIYDCK---GND----MINMIKLDFTPLTVECIHYLGD  147 (261)
Q Consensus        84 ~~~~~~-------~~~~~~~--~~~~~~~~~~~~s~~~d~~i~i~d~~---~~~----~~~~~~~~~~~~~~~~~~~~~~  147 (261)
                      +.....       ....+++  .+....+.+  +....+|.+..|.+.   .+.    .++.+..   +..+..+.+.++
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~a--fv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~---~~q~EGCVvDde  190 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYA--MVTGKEGEFEQYELNADKNGYISGKKVRAFKM---NSQTEGMAADDE  190 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEE--EEECSSSEEEEEEEEECTTSSEEEEEEEEEEC---SSCEEEEEEETT
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEE--EEEcCCceEEEEEEEcCCCCceeeEeeeccCC---CCccceEEEeCC
Confidence            321111       1223333  333333322  223678899888763   222    2333433   346788888888


Q ss_pred             CCceEEEEecCCCeEEEEEccCCC----ccceeecc-CcccCeEEEEEc--CCCC--EEEEEcCCCeEEEeeccc
Q psy6859         148 AIPTAAVSDQDSSHVHIYDCKGNG----TPLHVLDR-LHTKPVVLIKFN--PIYQ--VVVSVDKAGILEYWSGYK  213 (261)
Q Consensus       148 ~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~-~~~~~v~~~~~~--~~~~--~l~~~~~dg~i~iwd~~~  213 (261)
                      ...  +..+-++..+..++.....    ..+..... .....+..|+.-  ++++  +|+|.-.+++..+||...
T Consensus       191 ~~~--LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         191 YGS--LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             TTE--EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             CCc--EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            775  5555566666666654221    11212211 235567777654  3333  456666889999999754

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.76  E-value=3.7  Score=29.75  Aligned_cols=179  Identities=7%  Similarity=0.055  Sum_probs=89.8

Q ss_pred             CeEEEEEcC-CCeEEEecCCCeEEEEeccC---------CceeeeEEeeccccceeEEEEeeCCCEEEEEeCCCcEEEEE
Q psy6859           5 PITHVVVTK-TDFVITASNDGHIKFWKKQE---------EGIEFVKHFRSHLGVIHSICTNYNGTLLCTVASDKAMKVFD   74 (261)
Q Consensus         5 ~v~~~~~~~-~~~l~s~~~d~~i~iw~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~v~~wd   74 (261)
                      ..+-++.++ ..+++.|+.++ ++|-..+.         .+........  -..|..++|+.+  .++.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            455677887 66788777775 55665421         1111111111  235788899755  45544 455677787


Q ss_pred             ccccceeeeeeccCcceeEEEEeecCCceeeeeeecCCCCeEEEEEcCCCceeeEEee---cCCcceEEEEEEeCCCCce
Q psy6859          75 VINFDMINMIKLDFTPLTVECIHYLGDAIPTAAVSDQDSSRVHIYDCKGNDMINMIKL---DFTPLTVECIHYLGDAIPT  151 (261)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  151 (261)
                      ...-...........+  ...+.+....+..+    ..++.+.++++..++.......   ..-.....++.|++.+.. 
T Consensus       112 ~~~l~~~~~~~~~~~~--~~~~~~~p~~~~l~----~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq-  184 (381)
T d1xipa_         112 LEELSEFRTVTSFEKP--VFQLKNVNNTLVIL----NSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ-  184 (381)
T ss_dssp             SSSTTCEEEEEECSSC--EEEEEECSSEEEEE----ETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEE-
T ss_pred             eecccccccccccccc--ccceecCCceeEEE----ecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEE-
Confidence            7654333222211222  23333444444444    5789999999988754332210   001124566666666654 


Q ss_pred             EEEEecCCCeEEEE-EccCCCccceeeccCcccCeEEEEEcCCCCEEEEE
Q psy6859         152 AAVSDQDSSHVHIY-DCKGNGTPLHVLDRLHTKPVVLIKFNPIYQVVVSV  200 (261)
Q Consensus       152 ~~~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  200 (261)
                       ++++.. +...+- ++. ....+..-. .....|.+|.|-.+..++++-
T Consensus       185 -~v~~~g-~~~q~k~~i~-~~~~~~~p~-~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         185 -SFAWRN-GEMEKQFEFS-LPSELEELP-VEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             -EEEEET-TEEEEEEEEC-CCHHHHTSC-TTTSEEEEEEESSSSEEEEEE
T ss_pred             -EEEeCC-CceeeccCCC-CccccCCCc-CCCcceeEEEEecCceEEEEE
Confidence             333321 111111 111 111111111 234568899998887777654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.45  E-value=4.9  Score=29.81  Aligned_cols=53  Identities=8%  Similarity=0.101  Sum_probs=35.1

Q ss_pred             eEEEEEEeCCCCceEEEEecCCCeEEEEEccCCCcc--ceeec-----cCcccCeEEEEEcCC
Q psy6859         138 TVECIHYLGDAIPTAAVSDQDSSHVHIYDCKGNGTP--LHVLD-----RLHTKPVVLIKFNPI  193 (261)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~-----~~~~~~v~~~~~~~~  193 (261)
                      ..++|+|.|++..  +++--..|.|++++.. ++..  +..+.     ..-+.....|+|+|+
T Consensus        28 ~P~~la~~pdg~l--lVter~~G~i~~v~~~-~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQI--WLTERATGKILRVNPE-SGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCE--EEEETTTCEEEEECTT-TCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeE--EEEEecCCEEEEEECC-CCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4579999999973  5555447999999876 4432  22221     022456789999996

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.01  E-value=8.3  Score=28.19  Aligned_cols=200  Identities=11%  Similarity=-0.027  Sum_probs=96.1

Q ss_pred             eEEEEEcC-CCeEEEe-----cCCCeEEEEeccCCceeeeE-EeeccccceeEEEEeeCCCEEEEEeCC-----------
Q psy6859           6 ITHVVVTK-TDFVITA-----SNDGHIKFWKKQEEGIEFVK-HFRSHLGVIHSICTNYNGTLLCTVASD-----------   67 (261)
Q Consensus         6 v~~~~~~~-~~~l~s~-----~~d~~i~iw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------   67 (261)
                      +..++++| +++++.+     +..-.+++.|+.++  +.+. .+.  ......++|.+|++.|+-...+           
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg--~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--KELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--EEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcc--eecccccc--cccccceEEcCCCCEEEEEEeccccCccccccc
Confidence            44567888 7776632     23347999999987  4332 232  1223578899999887654332           


Q ss_pred             -----CcEEEEEcccccee--eeeeccCcc--eeEEEEeecCCceeeeeeecCCCC--eEEEEEcCCCce-------eeE
Q psy6859          68 -----KAMKVFDVINFDMI--NMIKLDFTP--LTVECIHYLGDAIPTAAVSDQDSS--RVHIYDCKGNDM-------INM  129 (261)
Q Consensus        68 -----g~v~~wd~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~d~--~i~i~d~~~~~~-------~~~  129 (261)
                           ..|..+.+.+...-  ..+.....+  ......+.+++.++....+ ..+.  .+.+.|+.....       ...
T Consensus       203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE-GCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC-SSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeec-cCCccEEEEEeeCCCcccccccccceeE
Confidence                 25777777665322  222222222  2234455566665443222 2233  344555543211       011


Q ss_pred             EeecCCcceEEEEEEeCCCCceEEEEe--cCCCeEEEEEccCCCcc--ceeeccCcccCeEEEEEcCCCCEEEEE-cCCC
Q psy6859         130 IKLDFTPLTVECIHYLGDAIPTAAVSD--QDSSHVHIYDCKGNGTP--LHVLDRLHTKPVVLIKFNPIYQVVVSV-DKAG  204 (261)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg  204 (261)
                      +. ........-+....+.  .++.+.  ..++.|...++. ....  ...+-..+...+..-.+...+.+|+.. ..++
T Consensus       282 ~~-~~~~~~~~~~~~~~~~--~~~~Tn~~a~~~~L~~~~~~-~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~  357 (430)
T d1qfma1         282 LI-DNFEGEYDYVTNEGTV--FTFKTNRHSPNYRLINIDFT-DPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (430)
T ss_dssp             EE-CSSSSCEEEEEEETTE--EEEEECTTCTTCEEEEEETT-BCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             ee-cccccceEEEecCCce--eecccCcccccceeEEecCC-CCccccceEEecccCcceeeeEEEEECCEEEEEEEcCC
Confidence            11 1111122223322222  223342  124667777766 3221  123321344445444444445555444 4554


Q ss_pred             --eEEEeecccc
Q psy6859         205 --ILEYWSGYKQ  214 (261)
Q Consensus       205 --~i~iwd~~~~  214 (261)
                        .|+++++.++
T Consensus       358 ~~~l~v~~~~~~  369 (430)
T d1qfma1         358 KNTLQLHDLATG  369 (430)
T ss_dssp             EEEEEEEETTTC
T ss_pred             EeEEEEEECCCC
Confidence              4778887643