Psyllid ID: psy6888

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MEFLVRDEIKSTSFKFLIFLVLFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKEVF
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEEcccccHHHHHHccccccEEEEEcccccccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccEEEEEEEEEEHHHHHHHHHHHccccEEEEccccccccEccccccHHHccHHHcc
Coil and Loop (DISEMBL)
MEFLVRDEIKSTSFKFLIFLVLFLSVNNILQTAHLAGGAKKVIisapsadapmfvcgvnldkfewkevf
Flexible Loop (DISEMBL)
meflvrdeikstsFKFLIFLVLFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKEVF
Low Complexity Region (SEG)
MEFLVRDEIKSTSFKFLIFLVLFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKEVF
Disordered region (IsUnstruct)
****VRDEIKSTSFKFLIFLVLFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK***
Disordered Region (DISOPRED)
*****RDEIKSTSFKFLIFLVLFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKF******
Disordered Region (DISEMBL)
MEFLVRDEIKSTSFKFLIFLVLFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKEVF
Disordered Region (DISPRO)
*EFLVRDEIKSTSFKFLIFLVLFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEFLVRDEIKSTSFKFLIFLVLFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKEVF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
P55071	289	Glyceraldehyde-3-phosphat	N/A	N/A	0.507	0.121	0.8	7e-11
P32636	338	Glyceraldehyde-3-phosphat	N/A	N/A	0.521	0.106	0.777	8e-11
O13507	338	Glyceraldehyde-3-phosphat	N/A	N/A	0.478	0.097	0.848	1e-10
Q8TFJ2	337	Glyceraldehyde-3-phosphat	N/A	N/A	0.478	0.097	0.818	3e-10
Q00301	291	Glyceraldehyde-3-phosphat	N/A	N/A	0.507	0.120	0.8	3e-10
Q9UR38	337	Glyceraldehyde-3-phosphat	N/A	N/A	0.478	0.097	0.818	3e-10
Q9C136	337	Glyceraldehyde-3-phosphat	N/A	N/A	0.478	0.097	0.818	5e-10
Q96UF2	338	Glyceraldehyde-3-phosphat	N/A	N/A	0.463	0.094	0.843	6e-10
P56649	333	Glyceraldehyde-3-phosphat	N/A	N/A	0.463	0.096	0.843	6e-10
Q96UF1	339	Glyceraldehyde-3-phosphat	N/A	N/A	0.463	0.094	0.875	6e-10

>sp|P55071|G3P_AMAMU Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Amanita muscaria GN=GPD PE=3 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/35 (80%), Positives = 33/35 (94%)

Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66
           +AHL GGAKK++ISAPSADAPMFVCGVNLDK++ K
Sbjct: 86  SAHLKGGAKKIVISAPSADAPMFVCGVNLDKYDPK 120

Amanita muscaria (taxid: 41956)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp|P32636|G3P2_AGABI Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/36 (77%), Positives = 33/36 (91%)

Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKE 67
           +AHL GGAKKV+ISAPSADAPM+VCGVNLDK+  K+
Sbjct: 107 SAHLKGGAKKVVISAPSADAPMYVCGVNLDKYNPKD 142

Agaricus bisporus (taxid: 5341)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O13507|G3P_PHARH Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/33 (84%), Positives = 31/33 (93%)

Query: 34  HLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66
           HL GGAKKV+ISAPSADAPMFVCGVNLDK++ K
Sbjct: 110 HLKGGAKKVVISAPSADAPMFVCGVNLDKYDPK 142

Phaffia rhodozyma (taxid: 5421)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8TFJ2|G3P_OMPOL Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 31/33 (93%)

Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
           +AHL GGAKKVIISAPSADAPM+VCGVNLD ++
Sbjct: 108 SAHLKGGAKKVIISAPSADAPMYVCGVNLDAYD 140

Omphalotus olearius (taxid: 72120)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q00301|G3P_BOLED Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Boletus edulis GN=GPD PE=3 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/35 (80%), Positives = 32/35 (91%)

Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66
           +AHL GGAKKVIISAPS+DAPMFVCGVNLD ++ K
Sbjct: 87  SAHLKGGAKKVIISAPSSDAPMFVCGVNLDAYDPK 121

Boletus edulis (taxid: 36056)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9UR38|G3P_LENED Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 31/33 (93%)

Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
           +AHL GGAKKVIISAPSADAPM+VCGVNLD ++
Sbjct: 108 SAHLKGGAKKVIISAPSADAPMYVCGVNLDSYD 140

Lentinula edodes (taxid: 5353)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9C136|G3P1_MUCCL Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Mucor circinelloides f. lusitanicus GN=GPD1 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 31/33 (93%)

Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
           +AHL GGAKKVIISAPSADAPMFVCGVNL+ ++
Sbjct: 108 SAHLKGGAKKVIISAPSADAPMFVCGVNLEAYK 140

Mucor circinelloides f. lusitanicus (taxid: 29924)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q96UF2|G3P2_MUCCL Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Mucor circinelloides f. lusitanicus GN=GPD2 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/32 (84%), Positives = 30/32 (93%)

Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           +AHL GGAKKVIISAPS DAPMFVCGVNL+K+
Sbjct: 108 SAHLQGGAKKVIISAPSGDAPMFVCGVNLEKY 139

Mucor circinelloides f. lusitanicus (taxid: 29924)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P56649|G3P_PANVR Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/32 (84%), Positives = 30/32 (93%)

Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           +AH  GGAKKVIISAPSADAPMFVCGVNL+K+
Sbjct: 105 SAHFKGGAKKVIISAPSADAPMFVCGVNLEKY 136

Panulirus versicolor (taxid: 150436)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q96UF1|G3P3_MUCCL Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Mucor circinelloides f. lusitanicus GN=GPD3 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/32 (87%), Positives = 30/32 (93%)

Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           +AHL GGAKKVIISAPSADAPMFV GVNLDK+
Sbjct: 109 SAHLKGGAKKVIISAPSADAPMFVVGVNLDKY 140

Mucor circinelloides f. lusitanicus (taxid: 29924)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
262034831	177	glyceraldehyde 3 phosphate dehydrogenase	0.666	0.259	0.652	5e-10
262034873	177	glyceraldehyde 3 phosphate dehydrogenase	0.681	0.265	0.638	7e-10
384873219	197	glyceraldehyde-3-phosphate dehydrogenase	0.521	0.182	0.833	8e-10
47779455	262	glyceraldehyde 3-phosphate dehydrogenase	0.492	0.129	0.882	9e-10
425875215	184	glyceraldehyde-3-phosphate dehydrogenase	0.550	0.206	0.763	9e-10
57232512	231	glyceraldehyde 3-phosphate dehydrogenase	0.492	0.147	0.882	1e-09
47779469	227	glyceraldehyde 3-phosphate dehydrogenase	0.492	0.149	0.882	1e-09
47779427	282	glyceraldehyde 3-phosphate dehydrogenase	0.492	0.120	0.882	1e-09
408474518	337	glyceraldehyde-3-phosphate dehydrogenase	0.507	0.103	0.857	1e-09
47779471	233	glyceraldehyde 3-phosphate dehydrogenase	0.492	0.145	0.882	1e-09

>gi|262034831|gb|ACY07040.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034833|gb|ACY07041.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034835|gb|ACY07042.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034837|gb|ACY07043.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034839|gb|ACY07044.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034841|gb|ACY07045.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034843|gb|ACY07046.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034845|gb|ACY07047.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034847|gb|ACY07048.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034849|gb|ACY07049.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034851|gb|ACY07050.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034853|gb|ACY07051.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034855|gb|ACY07052.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034857|gb|ACY07053.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034859|gb|ACY07054.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034861|gb|ACY07055.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034863|gb|ACY07056.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034865|gb|ACY07057.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034867|gb|ACY07058.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034869|gb|ACY07059.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum] gi|262034871|gb|ACY07060.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma scalpturatum]

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 37/46 (80%)

Query: 22 LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKE 67
          +F+ ++     AHL GGAKKVIISAPSADAPM+VCGVNLDK++ K 
Sbjct: 5  IFMLISGDRAKAHLNGGAKKVIISAPSADAPMYVCGVNLDKYDSKH 50

Source: Tricholoma scalpturatum

Species: Tricholoma scalpturatum

Genus: Tricholoma

Family: Tricholomataceae

Order: Agaricales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|262034873|gb|ACY07061.1| glyceraldehyde 3 phosphate dehydrogenase [Tricholoma terreum]

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 36/47 (76%)

Query: 23 FLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKEVF 69
          F+ ++     AHL GGAKKVIISAPSADAPM+VCGVNLDK++ K   
Sbjct: 6  FMLISGDRAKAHLNGGAKKVIISAPSADAPMYVCGVNLDKYDSKHTI 52

Source: Tricholoma terreum

Species: Tricholoma terreum

Genus: Tricholoma

Family: Tricholomataceae

Order: Agaricales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|384873219|gb|AFI25463.1| glyceraldehyde-3-phosphate dehydrogenase, partial [Tricholoma sp. LCG-2012]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 33/36 (91%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKEV 68
           AHL GGAKKVIISAPSADAPM+VCGVNLDK+E K +
Sbjct: 67  AHLKGGAKKVIISAPSADAPMYVCGVNLDKYESKHL 102

Source: Tricholoma sp. LCG-2012

Species: Tricholoma sp. LCG-2012

Genus: Tricholoma

Family: Tricholomataceae

Order: Agaricales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|47779455|gb|AAT38654.1| glyceraldehyde 3-phosphate dehydrogenase [Leccinum populinum]

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66
           AHL GGAKKVIISAPSADAPMFVCGVNLDK++ K
Sbjct: 78  AHLKGGAKKVIISAPSADAPMFVCGVNLDKYDAK 111

Source: Leccinum populinum

Species: Leccinum populinum

Genus: Leccinum

Family: Boletaceae

Order: Boletales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|425875215|dbj|BAM68252.1| glyceraldehyde-3-phosphate dehydrogenase, partial [Tricholoma caligatum] gi|425875217|dbj|BAM68253.1| glyceraldehyde-3-phosphate dehydrogenase, partial [Tricholoma caligatum]

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 33/38 (86%)

Query: 32 TAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKEVF 69
          +AHL GGAKKVIISAPSADAPM+VCGVNLDK+  K+  
Sbjct: 3  SAHLKGGAKKVIISAPSADAPMYVCGVNLDKYNPKDTI 40

Source: Tricholoma caligatum

Species: Tricholoma caligatum

Genus: Tricholoma

Family: Tricholomataceae

Order: Agaricales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|57232512|gb|AAW47919.1| glyceraldehyde 3-phosphate dehydrogenase [Leccinum variicolor]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66
           AHL GGAKKVIISAPSADAPMFVCGVNLDK++ K
Sbjct: 79  AHLKGGAKKVIISAPSADAPMFVCGVNLDKYDSK 112

Source: Leccinum variicolor

Species: Leccinum variicolor

Genus: Leccinum

Family: Boletaceae

Order: Boletales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|47779469|gb|AAT38661.1| glyceraldehyde 3-phosphate dehydrogenase [Leccinum variicolor]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66
           AHL GGAKKVIISAPSADAPMFVCGVNLDK++ K
Sbjct: 75  AHLKGGAKKVIISAPSADAPMFVCGVNLDKYDSK 108

Source: Leccinum variicolor

Species: Leccinum variicolor

Genus: Leccinum

Family: Boletaceae

Order: Boletales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|47779427|gb|AAT38640.1| glyceraldehyde 3-phosphate dehydrogenase [Leccinum talamancae]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66
           AHL GGAKKVIISAPSADAPMFVCGVNLDK++ K
Sbjct: 88  AHLKGGAKKVIISAPSADAPMFVCGVNLDKYDSK 121

Source: Leccinum talamancae

Species: Leccinum talamancae

Genus: Leccinum

Family: Boletaceae

Order: Boletales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|408474518|gb|AFU72283.1| glyceraldehyde-3-phosphate dehydrogenase [Amanita strobiliformis]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/35 (85%), Positives = 33/35 (94%)

Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66
           +AHL GGAKKVIISAPSADAPMFVCGVNLDK++ K
Sbjct: 107 SAHLKGGAKKVIISAPSADAPMFVCGVNLDKYDPK 141

Source: Amanita strobiliformis

Species: Amanita strobiliformis

Genus: Amanita

Family: Amanitaceae

Order: Agaricales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|47779471|gb|AAT38662.1| glyceraldehyde 3-phosphate dehydrogenase [Leccinum snellii]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK 66
           AHL GGAKKVIISAPSADAPMFVCGVNLDK++ K
Sbjct: 75  AHLKGGAKKVIISAPSADAPMFVCGVNLDKYDSK 108

Source: Leccinum snellii

Species: Leccinum snellii

Genus: Leccinum

Family: Boletaceae

Order: Boletales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
FB|FBgn0001092	332	Gapdh2 "Glyceraldehyde 3 phosp	0.478	0.099	0.818	2.1e-09
FB|FBgn0001091	332	Gapdh1 "Glyceraldehyde 3 phosp	0.463	0.096	0.843	2.8e-09
UNIPROTKB|Q01597	332	Gapdh1 "Glyceraldehyde-3-phosp	0.463	0.096	0.812	3.5e-09
UNIPROTKB|Q4U3L0	333	Gapdh "Glyceraldehyde-3-phosph	0.463	0.096	0.781	9.9e-09
UNIPROTKB|F8WFP3	208	Gapdh "Glyceraldehyde-3-phosph	0.826	0.274	0.523	1.2e-08
UNIPROTKB|H9KZJ5	145	H9KZJ5 "Uncharacterized protei	0.463	0.220	0.781	1.6e-08
UNIPROTKB|P17244	333	GAPDH "Glyceraldehyde-3-phosph	0.463	0.096	0.812	2.1e-08
POMBASE|SPBC354.12	335	gpd3 "glyceraldehyde 3-phospha	0.521	0.107	0.75	2.1e-08
UNIPROTKB|P51640	312	GAPDH "Glyceraldehyde-3-phosph	0.463	0.102	0.812	2.3e-08
UNIPROTKB|O57672	234	GAPDH "Glyceraldehyde-3-phosph	0.463	0.136	0.781	2.8e-08

FB|FBgn0001092 Gapdh2 "Glyceraldehyde 3 phosphate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 143 (55.4 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 27/33 (81%), Positives = 30/33 (90%)

Query:    32 TAHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
             + HL GGAKKVIISAPSADAPMFVCGVNLD ++
Sbjct:   106 STHLKGGAKKVIISAPSADAPMFVCGVNLDAYK 138

GO:0006096 "glycolysis" evidence=IEP;NAS

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISS;NAS;IDA

GO:0005737 "cytoplasm" evidence=NAS

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

FB|FBgn0001091 Gapdh1 "Glyceraldehyde 3 phosphate dehydrogenase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 142 (55.0 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 27/32 (84%), Positives = 29/32 (90%)

Query:    32 TAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
             + HL GGAKKVIISAPSADAPMFVCGVNLD +
Sbjct:   106 STHLKGGAKKVIISAPSADAPMFVCGVNLDAY 137

GO:0006096 "glycolysis" evidence=IEP;NAS

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISS;NAS;IDA

GO:0005737 "cytoplasm" evidence=NAS

GO:0031430 "M band" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|Q01597 Gapdh1 "Glyceraldehyde-3-phosphate dehydrogenase" [Drosophila hydei (taxid:7224)]

 Score = 141 (54.7 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 26/32 (81%), Positives = 29/32 (90%)

Query:    32 TAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
             + HL GGAKKV+ISAPSADAPMFVCGVNLD +
Sbjct:   106 STHLKGGAKKVVISAPSADAPMFVCGVNLDAY 137

GO:0005737 "cytoplasm" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISS

UNIPROTKB|Q4U3L0 Gapdh "Glyceraldehyde-3-phosphate dehydrogenase" [Glossina morsitans morsitans (taxid:37546)]

 Score = 137 (53.3 bits), Expect = 9.9e-09, P = 9.9e-09
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query:    32 TAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
             +AH  GGAKKV+ISAPSADAPMFVCGVNL+ +
Sbjct:   106 SAHFKGGAKKVVISAPSADAPMFVCGVNLEAY 137

GO:0005737 "cytoplasm" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISS

UNIPROTKB|F8WFP3 Gapdh "Glyceraldehyde-3-phosphate dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 34/65 (52%), Positives = 43/65 (66%)

Query:     6 RDEIKSTSFKFLIFLVLFLSVNNILQT------AHLAGGAKKVIISAPSADAPMFVCGVN 59
             R EI  TS    + LVL +S + +  +      AHL GGAK+VIISAPSADAPMFV GVN
Sbjct:    30 RSEIPLTSNG--VMLVLSMSWSLLASSPPWRRGAHLKGGAKRVIISAPSADAPMFVMGVN 87

Query:    60 LDKFE 64
              +K++
Sbjct:    88 HEKYD 92

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IEA

UNIPROTKB|H9KZJ5 H9KZJ5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query:    33 AHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
             AHL GGAK+VIISAPSADAPMFV GVN +K++
Sbjct:     6 AHLKGGAKRVIISAPSADAPMFVMGVNHEKYD 37

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

UNIPROTKB|P17244 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Cricetulus griseus (taxid:10029)]

 Score = 134 (52.2 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 26/32 (81%), Positives = 29/32 (90%)

Query:    33 AHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
             AHL GGAK+VIISAPSADAPMFV GVN DK++
Sbjct:   108 AHLKGGAKRVIISAPSADAPMFVMGVNQDKYD 139

GO:0000226 "microtubule cytoskeleton organization" evidence=ISS

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISS

GO:0035605 "peptidyl-cysteine S-nitrosylase activity" evidence=ISS

GO:0035606 "peptidyl-cysteine S-trans-nitrosylation" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0051402 "neuron apoptotic process" evidence=ISS

POMBASE|SPBC354.12 gpd3 "glyceraldehyde 3-phosphate dehydrogenase Gpd3" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 134 (52.2 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query:    32 TAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKE 67
             +AHL GGAK+VIISAPS DAPMFV GVNL+KF   E
Sbjct:   109 SAHLKGGAKRVIISAPSKDAPMFVVGVNLEKFNPSE 144

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006096 "glycolysis" evidence=ISO

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|P51640 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Mesocricetus auratus (taxid:10036)]

 Score = 133 (51.9 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 26/32 (81%), Positives = 29/32 (90%)

Query:    33 AHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
             AHL GGAK+VIISAPSADAPMFV GVN DK++
Sbjct:    98 AHLKGGAKRVIISAPSADAPMFVMGVNHDKYD 129

GO:0000226 "microtubule cytoskeleton organization" evidence=ISS

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISS

GO:0035605 "peptidyl-cysteine S-nitrosylase activity" evidence=ISS

GO:0035606 "peptidyl-cysteine S-trans-nitrosylation" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0051402 "neuron apoptotic process" evidence=ISS

UNIPROTKB|O57672 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Meleagris gallopavo (taxid:9103)]

 Score = 129 (50.5 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query:    33 AHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
             AHL GGAK+VIISAPSADAPMFV GVN +K++
Sbjct:    19 AHLKGGAKRVIISAPSADAPMFVMGVNHEKYD 50

GO:0000226 "microtubule cytoskeleton organization" evidence=ISS

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISS

GO:0035605 "peptidyl-cysteine S-nitrosylase activity" evidence=ISS

GO:0035606 "peptidyl-cysteine S-trans-nitrosylation" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0051402 "neuron apoptotic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P17329	G3P2_CAEEL	1, ., 2, ., 1, ., 1, 2	0.8125	0.4637	0.0938	yes	N/A
P17244	G3P_CRIGR	2, ., 6, ., 9, 9, ., -	0.8125	0.4637	0.0960	yes	N/A
P46406	G3P_RABIT	2, ., 6, ., 9, 9, ., -	0.7812	0.4637	0.0960	yes	N/A
P07487	G3P2_DROME	1, ., 2, ., 1, ., 1, 2	0.8181	0.4782	0.0993	yes	N/A
P07486	G3P1_DROME	1, ., 2, ., 1, ., 1, 2	0.8437	0.4637	0.0963	yes	N/A
P0CN74	G3P_CRYNJ	1, ., 2, ., 1, ., 1, 2	0.8387	0.4492	0.0914	yes	N/A
P04797	G3P_RAT	2, ., 6, ., 9, 9, ., -	0.7812	0.4637	0.0960	yes	N/A
P00355	G3P_PIG	2, ., 6, ., 9, 9, ., -	0.7812	0.4637	0.0960	yes	N/A
Q5MJ86	G3P2_DANRE	1, ., 2, ., 1, ., 1, 2	0.5813	0.5942	0.1223	yes	N/A
Q0J8A4	G3PC1_ORYSJ	1, ., 2, ., 1, ., 1, 2	0.8387	0.4492	0.0919	yes	N/A
O44104	G3P2_DROPS	1, ., 2, ., 1, ., 1, 2	0.7878	0.4782	0.0993	yes	N/A
Q6CCU7	G3P_YARLI	1, ., 2, ., 1, ., 1, 2	0.7878	0.4782	0.0976	yes	N/A
O43026	G3P2_SCHPO	1, ., 2, ., 1, ., 1, 2	0.75	0.5217	0.1074	yes	N/A
P17330	G3P3_CAEEL	1, ., 2, ., 1, ., 1, 2	0.8125	0.4637	0.0938	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	69
PLN02272	421	PLN02272, PLN02272, glyceraldehyde-3-phosphate deh	3e-13
pfam00044	148	pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate deh	2e-11
smart00846	149	smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate de	8e-10
PLN02358	338	PLN02358, PLN02358, glyceraldehyde-3-phosphate deh	1e-09
PTZ00023	337	PTZ00023, PTZ00023, glyceraldehyde-3-phosphate deh	2e-09
TIGR01534	326	TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate deh	8e-09
COG0057	335	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrog	5e-07
PLN02237	442	PLN02237, PLN02237, glyceraldehyde-3-phosphate deh	2e-05
PTZ00353	342	PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-ph	3e-05
PLN03096	395	PLN03096, PLN03096, glyceraldehyde-3-phosphate deh	3e-05
PRK15425	331	PRK15425, gapA, glyceraldehyde-3-phosphate dehydro	1e-04
PTZ00434	361	PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-pho	2e-04
PRK13535	336	PRK13535, PRK13535, erythrose 4-phosphate dehydrog	0.001
PRK07403	337	PRK07403, PRK07403, glyceraldehyde-3-phosphate deh	0.003

>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase

 Score = 61.8 bits (150), Expect = 3e-13
 Identities = 24/28 (85%), Positives = 26/28 (92%)

Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVN 59
           +AHL GGAKKV+ISAPSADAPMFV GVN
Sbjct: 192 SAHLKGGAKKVVISAPSADAPMFVVGVN 219

Length = 421

>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

 Score = 54.8 bits (133), Expect = 2e-11
 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 33  AHLAGGAKKVIISAPSAD-APMFVCGVNLDKFE 64
           AHL  GAKKVIISAP+ D  P FV GVN + ++
Sbjct: 106 AHLKAGAKKVIISAPAKDDDPTFVYGVNHEDYD 138

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 148

>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

 Score = 50.6 bits (122), Expect = 8e-10
 Identities = 23/32 (71%), Positives = 25/32 (78%), Gaps = 1/32 (3%)

Query: 33  AHLAGGAKKVIISAPSADA-PMFVCGVNLDKF 63
           AHL  GAKKVIISAPS DA P FV GVN D++
Sbjct: 106 AHLKAGAKKVIISAPSKDADPTFVYGVNHDEY 137

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 149

>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase

 Score = 51.6 bits (123), Expect = 1e-09
 Identities = 23/32 (71%), Positives = 27/32 (84%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
           AHL GGAKKV+ISAPS DAPMFV GVN  +++
Sbjct: 114 AHLKGGAKKVVISAPSKDAPMFVVGVNEHEYK 145

Length = 338

>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 30  LQTAHLAGGAKKVIISAP-SADAPMFVCGVNLDKFEWKEV 68
              AHL GGAKKVI+SAP   D P++V GVN  +++  + 
Sbjct: 106 KAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQR 145

Length = 337

>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type I

 Score = 49.2 bits (118), Expect = 8e-09
 Identities = 17/28 (60%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 33  AHLAGGAKKVIISAPSA-DAPMFVCGVN 59
            HL  GAKKV+ISAPS  D    V GVN
Sbjct: 108 GHLEAGAKKVLISAPSKGDVKTIVYGVN 135

This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two PFAM models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 326

>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

 Score = 44.1 bits (105), Expect = 5e-07
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 33  AHL-AGGAKKVIISAPSADA-PMFVCGVNLDKFE 64
            HL AGGAKKV+ISAP  D     V GVN + ++
Sbjct: 108 KHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYD 141

Length = 335

>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 34  HLAGGAKKVIISAPS--ADAPMFVCGVNLDKFE 64
           H+  GAKKVII+AP+  AD P +V GVN D ++
Sbjct: 185 HIQAGAKKVIITAPAKGADIPTYVVGVNEDDYD 217

Length = 442

>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 34  HLAGGAKKVIISAPSADAPMFVCGVNLDK 62
           H+ GGAK V ++  SADAP  + G N ++
Sbjct: 112 HVTGGAKGVFVAGQSADAPTVMAGSNDER 140

Length = 342

>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A; Provisional

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 34  HLAGGAKKVIISAPS-ADAPMFVCGVNLDKF 63
           H+  GAKKV+I+AP   D P +V GVN D +
Sbjct: 170 HIQAGAKKVLITAPGKGDIPTYVVGVNADDY 200

Length = 395

>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A; Provisional

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 34  HLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKEV 68
           H+  GAKKV+++ PS D  PMFV G N DK+  +++
Sbjct: 109 HITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDI 144

Length = 331

>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 18/27 (66%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 34  HLAGGAKKVIISAP-SADAPMFVCGVN 59
           HL GGAKKV+ISAP S  A   V GVN
Sbjct: 124 HLKGGAKKVVISAPASGGAKTIVMGVN 150

Length = 361

>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 4/30 (13%)

Query: 33  AHLAGGAKKVIISAPSA---DAPMFVCGVN 59
           AH+A GAKKV+ S P +   DA + V GVN
Sbjct: 110 AHIAAGAKKVLFSHPGSNDLDATV-VYGVN 138

Length = 336

>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase; Reviewed

 Score = 33.3 bits (76), Expect = 0.003
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 32  TAHLAGGAKKVIISAP--SADAPMFVCGVNLDKFE 64
           + H+  GAKKV+I+AP    D   +V GVN  +++
Sbjct: 108 SKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYD 142

Length = 337

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	99.87
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	99.86
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	99.86
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	99.77
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	99.72
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	99.71
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	99.69
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	99.68
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	99.68
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	99.68
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	99.67
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	99.67
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	99.65
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	99.65
KOG0657|consensus	285		99.63
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	99.63
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	99.58
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	99.57
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	99.5
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	99.07
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	98.17
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.11
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.86

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=99.87  E-value=6.2e-23  Score=137.70  Aligned_cols=61  Identities=34%  Similarity=0.419  Sum_probs=57.1

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKE   67 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~   67 (69)
                      .+|||.++|+|+|++ ||.|+++++++.||++||||||+|||++| ++||||||||++|++++
T Consensus        79 ~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~  141 (149)
T smart00846       79 ANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPED  141 (149)
T ss_pred             HHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCC
Confidence            589999999999997 99999999999999999999999999987 46999999999999864

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=99.86  E-value=4.9e-23  Score=139.22  Aligned_cols=62  Identities=40%  Similarity=0.468  Sum_probs=56.7

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCCC-CC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEWK-EV   68 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~~-~i   68 (69)
                      ++|||..+|+++|++ ||+|++++.++.|+++||||||+|+|++|  +|||||||||+.|+++ +|
T Consensus        80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~i  145 (151)
T PF00044_consen   80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHI  145 (151)
T ss_dssp             GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSE
T ss_pred             cccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCE
Confidence            689999999999998 99999999999999999999999999986  7899999999999987 54

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=99.86  E-value=1.6e-22  Score=152.86  Aligned_cols=59  Identities=31%  Similarity=0.411  Sum_probs=56.4

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~   65 (69)
                      .||||-++|+++|++ ||+|++++++++||++||||||||||++| .|||||||||++|++
T Consensus        96 ~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~  156 (361)
T PTZ00434         96 ADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSP  156 (361)
T ss_pred             hhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCc
Confidence            589999999999997 99999999999999999999999999987 579999999999987

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=99.77  E-value=2.3e-19  Score=139.57  Aligned_cols=61  Identities=21%  Similarity=0.263  Sum_probs=56.0

Q ss_pred             cccccccccce--eeEe-eeceecHHHHHHHhh-CCCCeEEEcCCCCC-CCeEEecCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFL--IFLV-LFLSVNNILQTAHLA-GGAKKVIISAPSAD-APMFVCGVNLDKFEWKE   67 (69)
Q Consensus         7 ~~i~~t~~~~~--~~~~-tG~~~t~e~a~~HL~-~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~   67 (69)
                      ++|||+++|++  +|+. ||+|++++++++||+ +||||||||||+++ +||+|+||||+.|++++
T Consensus       216 ~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~  281 (477)
T PRK08289        216 EEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDED  281 (477)
T ss_pred             HHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCC
Confidence            68999999999  7775 999999999999999 89999999999986 79999999999998643

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.72  E-value=4.5e-18  Score=127.68  Aligned_cols=60  Identities=27%  Similarity=0.304  Sum_probs=57.2

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~   66 (69)
                      +++||..+|+++|++ ||.|++++++++|+++||||||||+|++|.||+|+||||+.|+++
T Consensus        84 ~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~  144 (342)
T PTZ00353         84 VEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSAS  144 (342)
T ss_pred             ccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCC
Confidence            689999999999997 999999999999999999999999999889999999999999874

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=99.71  E-value=6.8e-18  Score=126.09  Aligned_cols=62  Identities=31%  Similarity=0.498  Sum_probs=57.2

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKEV   68 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~i   68 (69)
                      +++||.++|+++|+. ||.|++++.+.+|+++|||||++|+|+++ .|+||+||||+.|++.+|
T Consensus        81 ~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~I  144 (331)
T PRK15425         81 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDI  144 (331)
T ss_pred             hhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCCCCE
Confidence            689999999999996 99999999999999999999999999875 699999999999976444

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=99.69  E-value=1.3e-17  Score=124.60  Aligned_cols=60  Identities=40%  Similarity=0.500  Sum_probs=56.8

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~   66 (69)
                      +++||.+.|+++|++ ||.|++++.+..|+++|||||++|+|++|.|+||+||||+.|+++
T Consensus        87 ~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~  147 (338)
T PLN02358         87 EDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSD  147 (338)
T ss_pred             ccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCC
Confidence            389999999999997 999999999999999999999999999888999999999999864

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=99.68  E-value=1.8e-17  Score=126.39  Aligned_cols=60  Identities=27%  Similarity=0.393  Sum_probs=56.3

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~   66 (69)
                      +++||.+.|+++|++ ||.|++++.++.|+++|||||++|+|+++ +||+|+||||+.|+++
T Consensus       142 ~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~  203 (395)
T PLN03096        142 LNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHS  203 (395)
T ss_pred             ccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccC
Confidence            689999999999997 99999999999999999999999999875 6999999999999864

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=99.68  E-value=2.2e-17  Score=122.92  Aligned_cols=60  Identities=33%  Similarity=0.413  Sum_probs=56.4

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~   66 (69)
                      +++||.++|+++|+. ||.|++++.+++|+++|||||++|+|++| +||+|+|||++.|+++
T Consensus        82 ~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~  143 (327)
T TIGR01534        82 SDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPE  143 (327)
T ss_pred             ccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCC
Confidence            689999999999997 99999999999999999999999999877 7999999999999864

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=99.68  E-value=3.4e-17  Score=125.82  Aligned_cols=60  Identities=45%  Similarity=0.522  Sum_probs=56.7

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~   66 (69)
                      +++||-++|+|+|++ ||.|++++.+.+|+++||||||||+|++|.|++|+||||+.|+++
T Consensus       166 ~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~  226 (421)
T PLN02272        166 AEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPN  226 (421)
T ss_pred             ccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCC
Confidence            489999999999997 999999999999999999999999998888999999999999864

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.67  E-value=6e-17  Score=121.90  Aligned_cols=61  Identities=28%  Similarity=0.309  Sum_probs=56.9

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhC-CCCeEEEcCCCCC-CCeEEecCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAG-GAKKVIISAPSAD-APMFVCGVNLDKFEWKE   67 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~-GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~   67 (69)
                      ++|||.++|++.|+. ||.|+++|++++|+++ |||||++|+|+++ ++|+||||||+.|++++
T Consensus        81 ~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~  144 (335)
T COG0057          81 ANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGH  144 (335)
T ss_pred             HHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCC
Confidence            689999999999997 9999999999999998 6999999999987 89999999999999643

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=99.67  E-value=3.6e-17  Score=126.43  Aligned_cols=59  Identities=31%  Similarity=0.458  Sum_probs=55.7

Q ss_pred             ccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCCC
Q psy6888           8 EIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEWK   66 (69)
Q Consensus         8 ~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~~   66 (69)
                      ++||.+.|+++|++ ||.|++++.++.|+++|||||++|||++|  +||||+||||+.|+++
T Consensus       158 ~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~  219 (442)
T PLN02237        158 KLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHE  219 (442)
T ss_pred             hCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcC
Confidence            99999999999997 99999999999999999999999999865  6999999999999864

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=99.65  E-value=6.4e-17  Score=121.20  Aligned_cols=59  Identities=24%  Similarity=0.361  Sum_probs=55.6

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~   65 (69)
                      +|+||.++|+++|++ ||.|++++.++.|+++|||||++|+|++|  .||+|+||||+.|++
T Consensus        82 ~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~  143 (337)
T PRK07403         82 LNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDH  143 (337)
T ss_pred             ccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhcc
Confidence            899999999999997 99999999999999999999999999765  499999999999985

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.65  E-value=9.2e-17  Score=120.25  Aligned_cols=60  Identities=33%  Similarity=0.434  Sum_probs=56.3

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~   66 (69)
                      .||||-+.|+++|+. ||.|++++.+..|+++|||||++|+|+++ .|++|+||||+.|+++
T Consensus        82 ~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~  143 (337)
T PTZ00023         82 AAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKS  143 (337)
T ss_pred             hhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCC
Confidence            689999999999997 99999999999999999999999999875 6999999999999864

>KOG0657|consensus

Probab=99.63  E-value=8.1e-17  Score=119.16  Aligned_cols=61  Identities=43%  Similarity=0.459  Sum_probs=57.9

Q ss_pred             ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCC
Q psy6888           6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWK   66 (69)
Q Consensus         6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~   66 (69)
                      ..+|+|-+-|++++.. ||+|++.+++..|+++||||||||||++|.||||||||+++|+++
T Consensus        65 p~~i~w~~~g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~  126 (285)
T KOG0657|consen   65 PAKIPWGAKGADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNS  126 (285)
T ss_pred             cccCccccccceeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccc
Confidence            3579999999999996 999999999999999999999999999999999999999999874

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=99.63  E-value=1.5e-16  Score=119.50  Aligned_cols=59  Identities=29%  Similarity=0.338  Sum_probs=55.4

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~   65 (69)
                      +|+||...|+++|+. ||.|++++.++.|+++|||||++|+|++| ++++|+||||+.|++
T Consensus        81 ~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~  141 (343)
T PRK07729         81 KELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDI  141 (343)
T ss_pred             hhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhcc
Confidence            789999999999997 99999999999999999999999999876 678899999999986

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=99.58  E-value=9.6e-16  Score=114.41  Aligned_cols=58  Identities=22%  Similarity=0.234  Sum_probs=53.5

Q ss_pred             ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCC
Q psy6888           6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEW   65 (69)
Q Consensus         6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~   65 (69)
                      -+++||.  |+++|+. ||.|++++.+..|+++|||||++|+|++|  .|++|+|||++.|++
T Consensus        81 ~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~  141 (334)
T PRK08955         81 IADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDP  141 (334)
T ss_pred             hhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcc
Confidence            3689996  9999997 99999999999999999999999999754  599999999999986

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=99.57  E-value=1.6e-15  Score=113.41  Aligned_cols=61  Identities=28%  Similarity=0.294  Sum_probs=55.7

Q ss_pred             ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-C-CCeEEecCCCCCCCCC
Q psy6888           6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-D-APMFVCGVNLDKFEWK   66 (69)
Q Consensus         6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d-~pt~V~GVN~~~y~~~   66 (69)
                      -+++||-+.|+|+|++ ||.|.+++.+..|+++|||+|++|+|++ | ++++|+||||+.|++.
T Consensus        82 p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~  145 (336)
T PRK13535         82 IASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAE  145 (336)
T ss_pred             cccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcC
Confidence            3689999999999997 9999999999999999999999999986 5 4589999999999864

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=99.50  E-value=1.8e-14  Score=107.01  Aligned_cols=61  Identities=25%  Similarity=0.301  Sum_probs=55.5

Q ss_pred             ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-C-CCeEEecCCCCCCCCC
Q psy6888           6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-D-APMFVCGVNLDKFEWK   66 (69)
Q Consensus         6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d-~pt~V~GVN~~~y~~~   66 (69)
                      -+++||.+.|+|+|++ ||.|.+++.+.+|+++|||+|++|+|++ | ++++|+||||+.|+++
T Consensus        80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~  143 (325)
T TIGR01532        80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAE  143 (325)
T ss_pred             hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCC
Confidence            3689999999999997 9999999999999999999999999976 4 4589999999999864

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=99.07  E-value=1.2e-10  Score=87.20  Aligned_cols=55  Identities=16%  Similarity=0.054  Sum_probs=49.7

Q ss_pred             ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCCCCC
Q psy6888          14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEWKEV   68 (69)
Q Consensus        14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~~~i   68 (69)
                      .++|++++ ||.++.++.++.|+++|+|+|++|+|++|  +++||+|+|+++|++.+|
T Consensus        74 ~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~~  131 (333)
T TIGR01546        74 EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKDY  131 (333)
T ss_pred             hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCce
Confidence            46888887 99999999999999999999999999987  479999999999987664

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=98.17  E-value=1.8e-06  Score=64.19  Aligned_cols=53  Identities=17%  Similarity=-0.011  Sum_probs=45.2

Q ss_pred             ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CC--CeEEecCCCCCCCCCC
Q psy6888          14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DA--PMFVCGVNLDKFEWKE   67 (69)
Q Consensus        14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~--pt~V~GVN~~~y~~~~   67 (69)
                      .++|.|+. ||.+.+.+.+..|+++| ++||+++|++ +.  .+||+|||++.+.+.+
T Consensus        77 ~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~~  133 (341)
T PRK04207         77 EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGKD  133 (341)
T ss_pred             ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCCC
Confidence            36888887 99999999999999999 9999999974 33  4689999999987544

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.11  E-value=0.0032  Score=46.44  Aligned_cols=50  Identities=30%  Similarity=0.241  Sum_probs=40.1

Q ss_pred             cceeeEe-eeceecHHHHHHHhhCCCCeEEE--cCCC--C-CCCeEEecCCCCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVII--SAPS--A-DAPMFVCGVNLDKFEWK   66 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVII--SaPs--~-d~pt~V~GVN~~~y~~~   66 (69)
                      |+|.|+. ||...+++.+.+|+++|+  +||  |++.  + +.|.++.++|++.++..
T Consensus        63 ~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~  118 (334)
T PRK14874         63 GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEH  118 (334)
T ss_pred             CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhh
Confidence            7888886 999999999999999998  555  4432  2 46999999999988653

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.86  E-value=0.0048  Score=45.93  Aligned_cols=50  Identities=28%  Similarity=0.256  Sum_probs=39.6

Q ss_pred             ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC----C-CCCeEEecCCCCCCCC
Q psy6888          14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS----A-DAPMFVCGVNLDKFEW   65 (69)
Q Consensus        14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs----~-d~pt~V~GVN~~~y~~   65 (69)
                      -+++.++. ||...+++.+..|+++|+  +||..++    + +.|.++.+||++.+++
T Consensus        60 ~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~  115 (339)
T TIGR01296        60 EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKE  115 (339)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhh
Confidence            36788776 999999999999999998  3663332    2 4689999999988864

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	69
1ihx_A	333	Crystal Structure Of Two D-Glyceraldehyde-3-Phospha		5e-11
1szj_G	333	Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydr		5e-11
1dss_G	333	Structure Of Active-Site Carboxymethylated D-Glycer		5e-11
1gpd_G	334	Studies Of Asymmetry In The Three-Dimensional Struc		1e-10
4gpd_1	333	The Structure Of Lobster Apo-D-Glyceraldehyde-3-Pho		1e-10
3e6a_O	336	Crystal Structure And Functional Analysis Of Glycer		3e-10
3e5r_O	337	Crystal Structure And Functional Analysis Of Glycer		3e-10
1j0x_O	332	Crystal Structure Of The Rabbit Muscle Glyceraldehy		3e-09
1znq_O	338	Crsytal Structure Of Human Liver Gapdh Length = 338		3e-09
1u8f_O	335	Crystal Structure Of Human Placental Glyceraldehyde		3e-09
3gpd_R	334	Twinning In Crystals Of Human Skeletal Muscle D-Gly		4e-08
2i5p_O	342	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		1e-06
4iq8_A	340	Crystal Structure Of Glyceraldehyde-3-phosphate Deh		4e-06
3pym_A	332	Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Res		4e-06
3h9e_B	346	Crystal Structure Of Human Sperm-Specific Glycerald		6e-06
3sth_A	361	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		1e-05
2b4r_O	345	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		3e-05
1ywg_O	337	The Structure Of Glyceraldehyde-3-Phosphate Dehydro		4e-05
2vyn_D	334	Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet		4e-05
3cif_A	359	Crystal Structure Of C153s Mutant Glyceraldehyde 3-		1e-04
1vsu_A	359	Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate		1e-04
3cps_A	354	Crystal Structure Of Cryptosporidium Parvum Glycera		1e-04
2vyn_A	331	Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet		1e-04
1gad_O	330	Comparison Of The Structures Of Wild Type And A N31		1e-04
1gae_O	330	Comparison Of The Structures Of Wild Type And A N31		1e-04
1s7c_A	331	Crystal Structure Of Mes Buffer Bound Form Of Glyce		1e-04

>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetry Length = 333

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/32 (84%), Positives = 30/32 (93%)
Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           +AH  GGAKKVIISAPSADAPMFVCGVNL+K+
Sbjct: 105 SAHFKGGAKKVIISAPSADAPMFVCGVNLEKY 136

>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase From Palinurus Versicolor Refined 2.0 Angstrom Resolution Length = 333

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/32 (84%), Positives = 30/32 (93%)
Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           +AH  GGAKKVIISAPSADAPMFVCGVNL+K+
Sbjct: 105 SAHFKGGAKKVIISAPSADAPMFVCGVNLEKY 136

>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated D-Glyceraldehyde-3- Phosphate Dehydrogenase From Palinurus Versicolor Length = 333

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/32 (84%), Positives = 30/32 (93%)
Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           +AH  GGAKKVIISAPSADAPMFVCGVNL+K+
Sbjct: 105 SAHFKGGAKKVIISAPSADAPMFVCGVNLEKY 136

>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase Length = 334

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 30/32 (93%)
Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           +AH  GGAKKV+ISAPSADAPMFVCGVNL+K+
Sbjct: 106 SAHFKGGAKKVVISAPSADAPMFVCGVNLEKY 137

>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase At 3.0 Angstroms Resolution Length = 333

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 30/32 (93%)
Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           +AH  GGAKKV+ISAPSADAPMFVCGVNL+K+
Sbjct: 105 SAHFKGGAKKVVISAPSADAPMFVCGVNLEKY 136

>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 336

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/31 (83%), Positives = 28/31 (90%)
Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           AHL GGAKKV+ISAPS DAPMFVCGVN DK+
Sbjct: 111 AHLKGGAKKVVISAPSKDAPMFVCGVNEDKY 141

>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 337

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/31 (83%), Positives = 28/31 (90%)
Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           AHL GGAKKV+ISAPS DAPMFVCGVN DK+
Sbjct: 112 AHLKGGAKKVVISAPSKDAPMFVCGVNEDKY 142

>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) Length = 332

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 29/32 (90%)
Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
           AHL GGAK+VIISAPSADAPMFV GVN +K++
Sbjct: 107 AHLKGGAKRVIISAPSADAPMFVMGVNHEKYD 138

>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh Length = 338

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 29/32 (90%)
Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
           AHL GGAK+VIISAPSADAPMFV GVN +K++
Sbjct: 113 AHLQGGAKRVIISAPSADAPMFVMGVNHEKYD 144

>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3- Phosphate Dehydrogenase At 1.75 Resolution Length = 335

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 29/32 (90%)
Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
           AHL GGAK+VIISAPSADAPMFV GVN +K++
Sbjct: 110 AHLQGGAKRVIISAPSADAPMFVMGVNHEKYD 141

>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle D-Glyceraldehyde-3- Phosphate Dehydrogenase Length = 334

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/31 (74%), Positives = 27/31 (87%)
Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           AHL GGAK+++ISAPSADAPMFV GVN  K+
Sbjct: 109 AHLKGGAKRIVISAPSADAPMFVMGVNHFKY 139

>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase Isoform 1 From K. Marxianus Length = 342

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 34  HLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKEV 68
           H+  GAKKV+I+APS  APMFV GVN DK+  +++
Sbjct: 122 HIDAGAKKVVITAPSKTAPMFVVGVNEDKYNGEKI 156

>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase 3 From Saccharomyces Cerevisiae Length = 340

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 2/36 (5%)
Query: 30  LQTA--HLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           L TA  H+  GAKKV+I+APS+ APMFV GVN +K+
Sbjct: 111 LDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKY 146

>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution Length = 332

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 2/36 (5%)
Query: 30  LQTA--HLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           L TA  H+  GAKKV+I+APS+ APMFV GVN +K+
Sbjct: 103 LDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKY 138

>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Toxoplasma Gondii Length = 361

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 33  AHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKEV 68
           AHL  GAKKVI+SAP  D  PMFV GVN D+++  +V
Sbjct: 130 AHLTNGAKKVIMSAPPKDDTPMFVMGVNNDQYKSSDV 166

>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum At 2.25 Angstrom Resolution Reveals Intriguing Extra Electron Density In The Active Site Length = 345

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 30  LQTAHLAGGAKKVIISAPSA-DAPMFVCGVNLDKFEWKEVF 69
           L ++HL GGAKKVI+SAP   D P++V G+N  +++ K++ 
Sbjct: 115 LASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLI 155

>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum Length = 337

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 30  LQTAHLAGGAKKVIISAPSA-DAPMFVCGVNLDKFEWKEVF 69
           L ++HL GGAKKVI+SAP   D P++V G+N  +++ K++ 
Sbjct: 107 LASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLI 147

>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 334

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 32  TAHLAGGAKKVIISAPSADAPMFVCGVN 59
           + H++ GA++VI++APS DAPM V GVN
Sbjct: 106 SGHISSGARRVIVTAPSPDAPMLVMGVN 133

>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 34  HLAGGAKKVIISAPSAD-APMFVCGVNLDKFE 64
           HL GGAKKVIISAP  D  PM+V GVN  +++
Sbjct: 130 HLKGGAKKVIISAPPKDNVPMYVMGVNNTEYD 161

>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 34  HLAGGAKKVIISAPSAD-APMFVCGVNLDKFE 64
           HL GGAKKVIISAP  D  PM+V GVN  +++
Sbjct: 130 HLKGGAKKVIISAPPKDNVPMYVMGVNNTEYD 161

>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Glyceraldehyde-3-Phosphate Dehydrogenase Length = 354

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 34  HLAGGAKKVIISAPSAD-APMFVCGVNLDKFE 64
           HL GGAKKVIISAP  D  PM+V GVN  +++
Sbjct: 125 HLKGGAKKVIISAPPKDNVPMYVMGVNNTEYD 156

>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 331

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 34  HLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKEV 68
           H+  GAKKV+++ PS D  PMFV G N DK+  +++
Sbjct: 109 HITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDI 144

>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 34  HLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKEV 68
           H+  GAKKV+++ PS D  PMFV G N DK+  +++
Sbjct: 108 HITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDI 143

>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 34  HLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKEV 68
           H+  GAKKV+++ PS D  PMFV G N DK+  +++
Sbjct: 108 HITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDI 143

>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of Glyceraldehyde 3- Phosphate Dehydrogenase From Escherichia Coli Length = 331

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 34  HLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKEV 68
           H+  GAKKV+++ PS D  PMFV G N DK+  +++
Sbjct: 109 HITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDI 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	69
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	2e-17
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	2e-17
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	2e-17
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	4e-17
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	6e-16
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	6e-16
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	1e-15
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	2e-15
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	1e-12
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	1e-12
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	9e-12
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	2e-11
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	3e-11
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	3e-11
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	4e-11
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	4e-11
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	2e-10
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	4e-10
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	4e-09
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	4e-08
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	4e-08
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	2e-07
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	6e-07
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	3e-06

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O Length = 337

 Score = 73.0 bits (180), Expect = 2e-17
 Identities = 26/32 (81%), Positives = 28/32 (87%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
           AHL GGAKKV+ISAPS DAPMFVCGVN DK+ 
Sbjct: 112 AHLKGGAKKVVISAPSKDAPMFVCGVNEDKYT 143

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* Length = 346

 Score = 72.6 bits (179), Expect = 2e-17
 Identities = 18/32 (56%), Positives = 25/32 (78%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
            H++ GA++V+ISAPS DAPMFV GVN + + 
Sbjct: 113 DHISAGAQRVVISAPSPDAPMFVMGVNENDYN 144

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* Length = 332

 Score = 72.6 bits (179), Expect = 2e-17
 Identities = 19/32 (59%), Positives = 25/32 (78%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
            H+  GAKKV+I+APS+ APMFV GVN +K+ 
Sbjct: 108 KHIDAGAKKVVITAPSSTAPMFVMGVNEEKYT 139

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 Length = 335

 Score = 71.9 bits (177), Expect = 4e-17
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKFE 64
           AHL GGAK+VIISAPSADAPMFV GVN +K++
Sbjct: 110 AHLQGGAKRVIISAPSADAPMFVMGVNHEKYD 141

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* Length = 354

 Score = 68.7 bits (169), Expect = 6e-16
 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 33  AHLAGGAKKVIISAPSAD-APMFVCGVNLDKFE 64
            HL GGAKKVIISAP  D  PM+V GVN  +++
Sbjct: 124 LHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYD 156

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* Length = 330

 Score = 68.7 bits (169), Expect = 6e-16
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 33  AHLAGGAKKVIISAPSAD-APMFVCGVNLDKF 63
            H+  GAKKV+++ PS D  PMFV G N DK+
Sbjct: 107 KHITAGAKKVVMTGPSKDNTPMFVKGANFDKY 138

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* Length = 345

 Score = 68.0 bits (167), Expect = 1e-15
 Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)

Query: 33  AHLAGGAKKVIISAPSAD-APMFVCGVNLDKFE 64
           +HL GGAKKVI+SAP  D  P++V G+N  +++
Sbjct: 118 SHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYD 150

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* Length = 359

 Score = 67.6 bits (166), Expect = 2e-15
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 33  AHLAGGAKKVIISAP-SADAPMFVCGVNLDKFE 64
            HL GGA+KV+ISAP S  A   V GVN  ++ 
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYN 154

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* Length = 338

 Score = 59.5 bits (145), Expect = 1e-12
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 33  AHLAGGAKKVIISAPS-ADAPMFVCGVNLDKF 63
           AH+  GAKKV+ISAP+  D    V   N  + 
Sbjct: 110 AHIEAGAKKVLISAPATGDLKTIVFNTNHQEL 141

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* Length = 334

 Score = 59.4 bits (145), Expect = 1e-12
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 33  AHLAGGAKKVIISAPSADA-PMFVCGVNLDKF 63
            HL  GAKKVIISAP+ +     V GVN DK+
Sbjct: 107 KHLEAGAKKVIISAPAKNEDITIVMGVNQDKY 138

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} Length = 342

 Score = 57.1 bits (139), Expect = 9e-12
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 33  AHLAGGAKKVIISAPSADA-PMFVCGVNLDKFEWKE 67
            HL GGAKKVII+AP+ +     V GVN +K+  KE
Sbjct: 108 KHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNPKE 143

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A Length = 380

 Score = 56.0 bits (136), Expect = 2e-11
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 33  AHLAGGAKKVIISAPS--ADAPMFVCGVNLDKF 63
            H+  GAKKV+I+AP        +V GVN  ++
Sbjct: 110 KHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEY 142

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* Length = 339

 Score = 55.2 bits (134), Expect = 3e-11
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 33  AHLAGGAKKVIISAPS--ADAPMFVCGVNLDKF 63
            H+  GAKKV+I+AP        +V GVN  ++
Sbjct: 110 KHIQAGAKKVLITAPGKGEGVGTYVIGVNDSEY 142

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* Length = 331

 Score = 55.2 bits (134), Expect = 3e-11
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 33  AHLAGGAKKVIISAPSADA-PMFVCGVNLDKF 63
           AHL GGAKKVII+AP+       V GVN + +
Sbjct: 105 AHLEGGAKKVIITAPAKGEDITIVMGVNHEAY 136

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} Length = 345

 Score = 55.2 bits (134), Expect = 4e-11
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 33  AHLAGGAKKVIISAPSADA-PMFVCGVNLDKF 63
            H+  GAKKVI++AP  +     V GVN D+ 
Sbjct: 110 LHVEAGAKKVILTAPGKNEDVTIVVGVNEDQL 141

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* Length = 337

 Score = 55.2 bits (134), Expect = 4e-11
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 33  AHLAGGAKKVIISAPSADA-PMFVCGVNLDKF 63
            HL  GAKKV+I+AP     P +V GVN + +
Sbjct: 110 KHLQAGAKKVLITAPGKGDIPTYVVGVNEEGY 141

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Length = 332

 Score = 52.9 bits (128), Expect = 2e-10
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 33  AHLAGGAKKVIISAPSADA-PMFVCGVNLDKF 63
            HL  GAKKVII+AP+       V G N D+ 
Sbjct: 108 LHLQAGAKKVIITAPAKGEDITVVIGCNEDQL 139

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} Length = 356

 Score = 52.2 bits (126), Expect = 4e-10
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 34  HLA-GGAKKVIISAPSADA-PMFVCGVNLDKF 63
           H+   GAKKVI++ P+ D     V GVN    
Sbjct: 131 HVNHAGAKKVILTVPAKDEIKTIVLGVNDHDI 162

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* Length = 335

 Score = 49.8 bits (120), Expect = 4e-09
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 33  AHLAGGAKKVIISAPSADA-PMFVCGVNLDKF 63
            HL  GAK+VI+SAP+  A    V GVN DK 
Sbjct: 110 LHLEAGAKRVIVSAPADGADLTVVYGVNNDKL 141

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* Length = 339

 Score = 46.7 bits (112), Expect = 4e-08
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 33  AHLAGGAKKVIISAPSADA--PMFVCGVNLDKF 63
           AH+A GAKKV+ S P ++      V GVN D+ 
Sbjct: 111 AHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQL 143

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* Length = 335

 Score = 46.7 bits (112), Expect = 4e-08
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 33  AHLAGGAKKVIISAPSADA--PMFVCGVNLDKF 63
           AH+ GGAKKVIISAP         V GVN    
Sbjct: 110 AHIKGGAKKVIISAPGGADVDATVVYGVNHGTL 142

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 Length = 337

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 2/32 (6%)

Query: 33  AHLAGGAKKVIISAPSADAP--MFVCGVNLDK 62
            +   G K +       +     F    N ++
Sbjct: 97  MYKEKGIKAIFQGGEKHEDIGLSFNSLSNYEE 128

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 Length = 334

 Score = 43.2 bits (102), Expect = 6e-07
 Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 2/40 (5%)

Query: 32  TAHLAGGAKKVIISAPSADAP--MFVCGVNLDKFEWKEVF 69
             +   G K +      AD     FV   N +    K   
Sbjct: 97  PLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYV 136

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} Length = 343

 Score = 41.3 bits (97), Expect = 3e-06
 Identities = 3/35 (8%), Positives = 7/35 (20%), Gaps = 3/35 (8%)

Query: 33  AHLAGGAKKVIISAPSADA---PMFVCGVNLDKFE 64
                   K I+            F    + ++  
Sbjct: 100 NIYKPHKVKAILQGGEKAKDVEDNFNALWSYNRCY 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	99.82
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	99.81
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	99.8
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	99.79
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	99.79
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	99.78
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	99.78
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	99.74
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	99.7
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	99.68
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	99.68
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	99.65
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	99.61
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	99.57
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	99.57
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	99.56
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	99.56
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	99.55
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	99.54
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	99.53
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	99.51
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	99.51
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	98.92
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	98.4
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	98.4
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	98.36
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	98.09
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	98.01
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.93
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.92
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.8
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.64
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.27
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.23
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	97.1
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.09
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.07
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.07
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.82
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.79
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.04
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	95.97
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	94.87

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=99.82  E-value=6.7e-21  Score=141.35  Aligned_cols=61  Identities=34%  Similarity=0.379  Sum_probs=57.7

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKE   67 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~~   67 (69)
                      ++|||...|+++|++ ||.|++++++++|+++||||||||+|++|+|||||||||++|++++
T Consensus        81 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~~~~  142 (332)
T 3pym_A           81 ANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDL  142 (332)
T ss_dssp             GGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCTTC
T ss_pred             ccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCCCCCCeEeeccchhhcCccc
Confidence            579999999999996 9999999999999999999999999999999999999999998743

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=99.81  E-value=1.3e-20  Score=140.44  Aligned_cols=59  Identities=32%  Similarity=0.451  Sum_probs=56.9

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~   65 (69)
                      ++|||.+.|+|+|++ ||.|+++++++.|+++||||||||+|++|+||||+||||++|++
T Consensus        86 ~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~d~plvV~gVN~~~~~~  145 (346)
T 3h9e_O           86 KQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNP  145 (346)
T ss_dssp             GGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCT
T ss_pred             hhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeeCcccCHHHcCc
Confidence            579999999999996 99999999999999999999999999999999999999999986

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=99.80  E-value=1.2e-20  Score=140.28  Aligned_cols=61  Identities=48%  Similarity=0.596  Sum_probs=57.7

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKE   67 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~~   67 (69)
                      ++|||...|+++|++ ||.|+++++++.|+++||||||||+|++|+||||+||||++|++++
T Consensus        85 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~~~~  146 (337)
T 3v1y_O           85 DEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDI  146 (337)
T ss_dssp             GGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCCSSSCBCCTTTTGGGCCTTC
T ss_pred             ccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeECCCCCHHHcCCCC
Confidence            579999999999996 9999999999999999999999999999999999999999998743

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=99.79  E-value=3.4e-20  Score=137.93  Aligned_cols=60  Identities=25%  Similarity=0.330  Sum_probs=56.7

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CCCeEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DAPMFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~pt~V~GVN~~~y~~~   66 (69)
                      ++|||...|+++|++ ||.|+++++++.|+++||||||||+|++ |+||||+||||++|+++
T Consensus        83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~  144 (338)
T 3lvf_P           83 SKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGS  144 (338)
T ss_dssp             GGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCCSC
T ss_pred             ccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCCCCCCCEEeccCCHHHcCcc
Confidence            579999999999996 9999999999999999999999999997 68999999999999864

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=99.79  E-value=3.3e-20  Score=137.73  Aligned_cols=61  Identities=31%  Similarity=0.297  Sum_probs=57.0

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKE   67 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~   67 (69)
                      ++|||...|+++|++ ||.|+++++++.|+++||||||||+|++| +||||+||||++|++++
T Consensus        83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~~p~vV~gVN~~~~~~~~  145 (335)
T 3doc_A           83 AELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPADGADLTVVYGVNNDKLTKDH  145 (335)
T ss_dssp             TSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCTTCSEECCTTTTGGGCCTTC
T ss_pred             ccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCCCCCCCEEecccCHHHhCccC
Confidence            579999999999996 99999999999999999999999999987 69999999999998743

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=99.78  E-value=3.1e-20  Score=139.08  Aligned_cols=59  Identities=29%  Similarity=0.387  Sum_probs=56.2

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CCCeEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DAPMFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~pt~V~GVN~~~y~~   65 (69)
                      ++|||...|+++|++ ||.|+++++++.|+++||||||||+|++ |+|||||||||++|++
T Consensus        95 ~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~  155 (359)
T 3ids_C           95 ADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNP  155 (359)
T ss_dssp             TTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCCBSSCEECCTTTTGGGCCT
T ss_pred             ccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCCeEEeccCHHHcCC
Confidence            579999999999996 9999999999999999999999999997 6899999999999987

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=99.78  E-value=5.1e-20  Score=137.35  Aligned_cols=59  Identities=27%  Similarity=0.338  Sum_probs=56.1

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CCCeEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DAPMFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~pt~V~GVN~~~y~~   65 (69)
                      ++|||...|+++|++ ||.|+++++++.|+++||||||||+|++ |+||||+||||++|++
T Consensus        83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~  143 (345)
T 4dib_A           83 KELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDI  143 (345)
T ss_dssp             GGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCT
T ss_pred             hhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHcCc
Confidence            579999999999996 9999999999999999999999999997 5799999999999986

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=99.74  E-value=1.9e-19  Score=134.73  Aligned_cols=60  Identities=22%  Similarity=0.240  Sum_probs=56.5

Q ss_pred             cccccccccceeeEe-eeceec----HHHHHHHhh-CCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVN----NILQTAHLA-GGAKKVIISAPSAD-APMFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t----~e~a~~HL~-~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~   66 (69)
                      ++|||...|+++|++ ||.|++    +++++.|++ +||||||||+|++| +||||+||||++|+++
T Consensus        99 ~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps~d~vp~vV~gVN~~~~~~~  165 (356)
T 3hja_A           99 KNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSD  165 (356)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCCSSCCEECCTTTSGGGCCTT
T ss_pred             hhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCCCCCCCEEeccCCHHHcCcC
Confidence            679999999999996 999999    999999999 99999999999986 6999999999999874

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=99.70  E-value=5.6e-18  Score=125.36  Aligned_cols=60  Identities=33%  Similarity=0.394  Sum_probs=56.4

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CCC-eEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DAP-MFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~p-t~V~GVN~~~y~~~   66 (69)
                      +++||.+.|+++|++ ||.|++++.++.|+++||||||||+|++ |.| |||+|||++.|+++
T Consensus        83 ~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps~~dvp~~vV~gVN~~~~~~~  145 (335)
T 1obf_O           83 AQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKST  145 (335)
T ss_dssp             GGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGGCCTT
T ss_pred             ccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcccCCCCceEEccCCHHHhCcC
Confidence            489999999999997 9999999999999999999999999997 679 99999999999863

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=99.68  E-value=1.1e-17  Score=124.34  Aligned_cols=60  Identities=33%  Similarity=0.528  Sum_probs=56.2

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~   66 (69)
                      +++||.+.|+++|++ ||.|++++.++.|+++||||||||+|+++ .||||+|||++.|+++
T Consensus        91 ~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps~~dvplvV~gVN~~~~~~~  152 (345)
T 2b4r_O           91 SQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTK  152 (345)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCTT
T ss_pred             ccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHhCCC
Confidence            489999999999997 99999999999999999999999999986 6999999999999863

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=99.68  E-value=7.1e-18  Score=125.16  Aligned_cols=58  Identities=31%  Similarity=0.386  Sum_probs=55.9

Q ss_pred             ccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCC-eEEecCCCCCCCC
Q psy6888           8 EIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAP-MFVCGVNLDKFEW   65 (69)
Q Consensus         8 ~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~p-t~V~GVN~~~y~~   65 (69)
                      ++||.+.|+++|++ ||.|++++.++.|+++||||||||+|++|.| |||+|||++.|++
T Consensus        82 ~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps~dvp~~vV~gVN~~~~~~  141 (342)
T 2ep7_A           82 QIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNP  141 (342)
T ss_dssp             GCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCCBSCSEECCTTTSGGGCCT
T ss_pred             hCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCCCCCCceEEcCcCHHHhcc
Confidence            79999999999997 9999999999999999999999999999999 9999999999986

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=99.65  E-value=4.8e-17  Score=119.52  Aligned_cols=59  Identities=32%  Similarity=0.368  Sum_probs=55.4

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~   65 (69)
                      +++||.+.|+|+|++ ||.|++++.++.|+++||||||||+|++| .||+|+|||+++|++
T Consensus        78 ~~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~d~~p~vV~gVN~~~~~~  138 (331)
T 2g82_O           78 KEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDP  138 (331)
T ss_dssp             GGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCT
T ss_pred             hhCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCcCCCCEEeeccCHHHhCc
Confidence            358999999999997 99999999999999999999999999987 699999999999986

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=99.61  E-value=1.9e-16  Score=118.66  Aligned_cols=60  Identities=23%  Similarity=0.333  Sum_probs=55.7

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CC-eEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-AP-MFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~p-t~V~GVN~~~y~~~   66 (69)
                      +++||.+.|+|+|++ ||.|++++.+++||++||||||||+|++| .| |+|||||+++|++.
T Consensus        83 ~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~d~~p~~~V~GVN~e~~~~~  145 (380)
T 2d2i_A           83 LNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHE  145 (380)
T ss_dssp             GGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGGCCTT
T ss_pred             HHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCCCCCCceEEcccCHHHhccc
Confidence            378998889999997 99999999999999999999999999987 68 99999999999873

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=99.57  E-value=5.6e-16  Score=114.17  Aligned_cols=59  Identities=27%  Similarity=0.369  Sum_probs=54.6

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~   65 (69)
                      ++|||.+.|+|+|++ ||.|++++.++.|+++|||+|++|+|+.| .||+|||||+++|++
T Consensus        83 ~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r~d~p~~V~GVN~~~~~~  143 (337)
T 1rm4_O           83 VNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTH  143 (337)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCCBCCTTTTGGGCCT
T ss_pred             hhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECCcccCCCCeEeecCCHHHhCC
Confidence            457898889999997 99999999999999999999999999876 699999999999985

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=99.57  E-value=1e-15  Score=112.46  Aligned_cols=59  Identities=24%  Similarity=0.334  Sum_probs=55.4

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CC-eEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-AP-MFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~p-t~V~GVN~~~y~~   65 (69)
                      +++||.+.|+|+|++ ||.|++++.+..|+++||||||||+|++| .| ++|||||++.|++
T Consensus        83 ~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~~~~p~~~V~gVN~~~~~~  144 (339)
T 3b1j_A           83 LNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKGEGVGTYVIGVNDSEYRH  144 (339)
T ss_dssp             GGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGGCCT
T ss_pred             HHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCCCCCCeeEEcccCHHHhCc
Confidence            388999899999997 99999999999999999999999999986 68 9999999999987

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=99.56  E-value=6.6e-16  Score=114.53  Aligned_cols=59  Identities=39%  Similarity=0.452  Sum_probs=54.9

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~   65 (69)
                      ++|||.+.|+|+|++ ||.|.+++.+.+|+++||||||||+|++| .|++|||||+++|++
T Consensus        97 ~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~padd~~p~~V~GVN~~~~~~  157 (354)
T 3cps_A           97 AEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDP  157 (354)
T ss_dssp             GGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSCCCBCCTTTTGGGCCT
T ss_pred             HHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCCCCCCCEEEeccCHHHhCc
Confidence            468898889999997 99999999999999999999999999986 699999999999986

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=99.56  E-value=1e-15  Score=112.29  Aligned_cols=59  Identities=32%  Similarity=0.340  Sum_probs=55.2

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~   65 (69)
                      +++||.+.|+|+|++ ||.|.+++.+..|+++||||||||+|++| .|++|+|||+++|++
T Consensus        80 ~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~d~~p~~V~eVN~~~i~~  140 (334)
T 3cmc_O           80 ENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDP  140 (334)
T ss_dssp             GGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCT
T ss_pred             hhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCccCCCEeccccCHHHhCc
Confidence            458999899999997 99999999999999999999999999987 689999999999986

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=99.55  E-value=9.1e-16  Score=112.38  Aligned_cols=59  Identities=49%  Similarity=0.628  Sum_probs=55.1

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~   65 (69)
                      +++||...|+|+|++ ||.|.+++.+.+|+++|+||||||+|++|.|++|||||+++|++
T Consensus        85 ~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa~d~p~~V~gvN~~~~~~  144 (337)
T 3e5r_O           85 DEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTS  144 (337)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCT
T ss_pred             HHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCCCCCCEEEeccCHHHhCC
Confidence            467788889999997 99999999999999999999999999988899999999999985

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=99.54  E-value=1.3e-15  Score=111.64  Aligned_cols=59  Identities=27%  Similarity=0.290  Sum_probs=55.2

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCC-eEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAP-MFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~p-t~V~GVN~~~y~~   65 (69)
                      +++||.+.|+|+|+. ||.|.+++.+..|+++||||||||+|++|.| ++|+|||+++|++
T Consensus        81 ~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a~d~p~~~V~eVN~~~i~~  141 (332)
T 1hdg_O           81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKP  141 (332)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCT
T ss_pred             HHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCCCCCCceEEeccCHHHhCC
Confidence            458898889999997 9999999999999999999999999998889 9999999999985

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=99.53  E-value=2.7e-15  Score=109.35  Aligned_cols=59  Identities=46%  Similarity=0.526  Sum_probs=55.4

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~   65 (69)
                      +++||.+.|+|+|++ ||.|.+++.+.+|+++|||+|++|+|++|.|++|||||+++|++
T Consensus        83 ~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~~~~p~~V~gvN~~~~~~  142 (335)
T 1u8f_O           83 SKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDN  142 (335)
T ss_dssp             GGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSSSCBCCTTTTGGGCCT
T ss_pred             HHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCCCCCCeEEeccCHHHhCC
Confidence            478898899999997 99999999999999999999999999878899999999999985

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=99.51  E-value=3.5e-15  Score=109.16  Aligned_cols=62  Identities=31%  Similarity=0.498  Sum_probs=55.6

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKEV   68 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~i   68 (69)
                      ++|||...|+|+|+. ||.|.+++.+..|+++|||+|++|+|+++ .|++|||||+++|+...|
T Consensus        80 ~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~~~~~p~~V~GvN~~~~~~~~i  143 (330)
T 1gad_O           80 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDI  143 (330)
T ss_dssp             GGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCSCSE
T ss_pred             hhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCCCCCCCeEeecCCHHHhCCCCE
Confidence            567898889999997 99999999999999999999999999964 699999999999985444

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=99.51  E-value=4.8e-15  Score=108.77  Aligned_cols=59  Identities=29%  Similarity=0.313  Sum_probs=54.7

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC-CCCC-eEEecCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS-ADAP-MFVCGVNLDKFEW   65 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs-~d~p-t~V~GVN~~~y~~   65 (69)
                      +++||.+.|+|+|++ ||.|++++.+..|+++||||||||+|+ .|.| ++|+|||++.|++
T Consensus        84 ~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ad~d~p~~~V~gvN~~~~~~  145 (339)
T 2x5j_O           84 QSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRA  145 (339)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCCTTSSEECCTTTSGGGCCT
T ss_pred             HHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccccCCCCceeecccCHHHhcC
Confidence            368898889999997 999999999999999999999999998 5778 9999999999986

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=98.92  E-value=1.7e-10  Score=84.46  Aligned_cols=53  Identities=9%  Similarity=-0.078  Sum_probs=46.1

Q ss_pred             cceeeEe-eeceecHHHHH-HHhhCCCCeEEEcCCCC-C-CC-eEEecCCCCCCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQT-AHLAGGAKKVIISAPSA-D-AP-MFVCGVNLDKFEWKEV   68 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~-~HL~~GAKkVIISaPs~-d-~p-t~V~GVN~~~y~~~~i   68 (69)
                      |+|+|++ ||.+.+.+.+. .|+++| ++||+|+|++ | .| +||+|||+++|++..|
T Consensus        81 ~vDiV~eatg~~~s~~~a~~~~l~aG-~~VI~sap~~~d~vp~~vV~gvN~~~~~~~~i  138 (343)
T 2yyy_A           81 DADIVVDGAPKKIGKQNLENIYKPHK-VKAILQGGEKAKDVEDNFNALWSYNRCYGKDY  138 (343)
T ss_dssp             GCSEEEECCCTTHHHHHHHHTTTTTT-CEEEECTTSCGGGSSEEECTTTTHHHHTTCSE
T ss_pred             CCCEEEECCCccccHHHHHHHHHHCC-CEEEECCCccccCCCceEEcccCHHHhccCCE
Confidence            8999997 99998888995 999999 7799999987 5 68 9999999999875433

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=98.40  E-value=3.1e-08  Score=71.25  Aligned_cols=52  Identities=21%  Similarity=0.097  Sum_probs=44.8

Q ss_pred             cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-C-C-CeEEecCCCCCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-D-A-PMFVCGVNLDKFEWKE   67 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d-~-pt~V~GVN~~~y~~~~   67 (69)
                      ++|.|++ |+.+.+.+.+..|+++| |+||+++|.+ | . |++|+|+|+++|++..
T Consensus        79 ~vDvV~~aTp~~~h~~~a~~~l~aG-k~Vi~sap~~~d~~~~~~v~~vn~~~~~~~~  134 (334)
T 2czc_A           79 KVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGEKADVAEVSFVAQANYEAALGKN  134 (334)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHT-CEEEECTTSCGGGSSEEECHHHHGGGGTTCS
T ss_pred             CCCEEEECCCccccHHHHHHHHHcC-CceEeecccccccccceEEeccCHHHHhhCC
Confidence            8899987 99998899999999999 7799999986 4 3 5999999999887544

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=98.40  E-value=6.2e-08  Score=70.17  Aligned_cols=51  Identities=22%  Similarity=0.062  Sum_probs=45.1

Q ss_pred             cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC--C-CCCeEEecCCCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS--A-DAPMFVCGVNLDKFEW   65 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs--~-d~pt~V~GVN~~~y~~   65 (69)
                      |+|+|++ ||.+.+++.+..|+++|+|.|.+|++.  + |.|++|++||++.|++
T Consensus        61 ~~DvV~~a~g~~~s~~~a~~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~  115 (331)
T 2yv3_A           61 PVDLVLASAGGGISRAKALVWAEGGALVVDNSSAWRYEPWVPLVVPEVNREKIFQ  115 (331)
T ss_dssp             CCSEEEECSHHHHHHHHHHHHHHTTCEEEECSSSSTTCTTSCBCCTTSCGGGGGG
T ss_pred             CCCEEEECCCccchHHHHHHHHHCCCEEEECCCccccCCCCCEEEcCcCHHHhcC
Confidence            8999997 999999999999999999877777774  3 5799999999999986

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=98.36  E-value=4.3e-08  Score=71.16  Aligned_cols=53  Identities=13%  Similarity=-0.022  Sum_probs=45.6

Q ss_pred             cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CC--CeEEecCCCCCCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DA--PMFVCGVNLDKFEWKEV   68 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~--pt~V~GVN~~~y~~~~i   68 (69)
                      ++|.|+. ||.+.+++.+..|+++|+ +||.++|.+ |.  |++|+|+|++.+++..|
T Consensus        78 ~vDvV~~atp~~~~~~~a~~~l~aG~-~VId~sp~~~d~~~~~~V~gvN~e~~~~~~i  134 (337)
T 1cf2_P           78 EADIVIDCTPEGIGAKNLKMYKEKGI-KAIFQGGEKHEDIGLSFNSLSNYEESYGKDY  134 (337)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHTC-CEEECTTSCHHHHSCEECHHHHGGGGTTCSE
T ss_pred             CCCEEEECCCchhhHHHHHHHHHcCC-EEEEecCCCCccCCCeEEeeeCHHHhcCCCE
Confidence            7888887 999999999999999995 599999985 33  89999999999876444

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=98.09  E-value=2.4e-07  Score=67.27  Aligned_cols=50  Identities=12%  Similarity=-0.033  Sum_probs=43.6

Q ss_pred             cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFE   64 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~   64 (69)
                      ++|.|++ ||.+.+++.+..|+++|+|+|.+|+|..+  +++||+|+|++++.
T Consensus        77 ~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~~~~~v~~vN~~~~~  129 (340)
T 1b7g_O           77 TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEAL  129 (340)
T ss_dssp             HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGSSCEECHHHHHHHHT
T ss_pred             CCCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCCCCEEEcCcchHHHc
Confidence            6888887 99999999999999999999999999764  47999999965543

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=98.01  E-value=3.7e-07  Score=67.17  Aligned_cols=51  Identities=22%  Similarity=0.078  Sum_probs=45.9

Q ss_pred             cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-----CCCeEEecCCCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-----DAPMFVCGVNLDKFEW   65 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-----d~pt~V~GVN~~~y~~   65 (69)
                      |+|+|+. ||.+.+++.+..|+++|+|+|+|++|++     +.|++|.+||++.|++
T Consensus        65 ~~DvVf~a~g~~~s~~~a~~~~~~G~k~vVID~ss~~R~~~~~~~~vpevN~~~i~~  121 (367)
T 1t4b_A           65 ALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITD  121 (367)
T ss_dssp             TCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHHHCCCCEEEEcCChhhccCCCCcEEeCCcCHHHHhh
Confidence            8899987 9999999999999999999999999986     4689999999887753

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.93  E-value=1.1e-06  Score=63.64  Aligned_cols=53  Identities=15%  Similarity=0.135  Sum_probs=45.6

Q ss_pred             ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCCC
Q psy6888          14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEWK   66 (69)
Q Consensus        14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~~   66 (69)
                      .|+|.|+. ||.+.+++.+..|+++|+|+|.+|+|..|  .|++|.+||++.|++.
T Consensus        67 ~~~DvV~~a~g~~~s~~~a~~~~~aG~kvId~Sa~~rd~~~~~~vpevN~~~i~~~  122 (340)
T 2hjs_A           67 SSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAERLASQ  122 (340)
T ss_dssp             GGCSEEEECSCHHHHHHHHHHHHHTTCEEEETTCTTTTTTSCBCCHHHHGGGGGGS
T ss_pred             cCCCEEEEcCCcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCeEEcCcCHHHHhcC
Confidence            38899887 99999999999999999998889999753  4788888999998753

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.92  E-value=3e-06  Score=61.35  Aligned_cols=54  Identities=15%  Similarity=0.006  Sum_probs=46.1

Q ss_pred             ccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC---CCCCeEEecCCCCCCCC
Q psy6888          10 KSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS---ADAPMFVCGVNLDKFEW   65 (69)
Q Consensus        10 ~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs---~d~pt~V~GVN~~~y~~   65 (69)
                      +|  .|+|+|+. ||.+.+++.+..|+++|++.|.+|++.   ++.|++|.+||++.|++
T Consensus        62 ~~--~~vDvVf~a~g~~~s~~~a~~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~  119 (336)
T 2r00_A           62 DW--SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAE  119 (336)
T ss_dssp             CG--GGCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGG
T ss_pred             Hh--cCCCEEEECCCchHHHHHHHHHHHcCCEEEEcCCccccCCCCCeEeccCCHHHhcc
Confidence            56  38999987 999999999999999999877788885   24689999999999874

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.80  E-value=1.4e-06  Score=64.67  Aligned_cols=51  Identities=22%  Similarity=0.066  Sum_probs=44.9

Q ss_pred             ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-----CCCeEEecCCCCCCC
Q psy6888          14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-----DAPMFVCGVNLDKFE   64 (69)
Q Consensus        14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-----d~pt~V~GVN~~~y~   64 (69)
                      -|+|+|+. ||.+.+++.+..|+++|+|++||+.|++     |.|++|.+||++.++
T Consensus        63 ~~~Dvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~  119 (370)
T 3pzr_A           63 KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQIL  119 (370)
T ss_dssp             TTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHH
T ss_pred             ccCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHh
Confidence            37889886 9999999999999999999999999984     358999999998775

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.64  E-value=4.1e-06  Score=62.33  Aligned_cols=51  Identities=24%  Similarity=0.122  Sum_probs=44.6

Q ss_pred             ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-----CCCeEEecCCCCCCC
Q psy6888          14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-----DAPMFVCGVNLDKFE   64 (69)
Q Consensus        14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-----d~pt~V~GVN~~~y~   64 (69)
                      .|+|+|+. ||.+.+++.+..|+++|+|++||+.|++     |.|++|.+||++.++
T Consensus        67 ~~vDvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~  123 (377)
T 3uw3_A           67 KKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIK  123 (377)
T ss_dssp             HTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHH
T ss_pred             cCCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHh
Confidence            37888886 9999999999999999999999999984     358999999998775

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.27  E-value=4.6e-05  Score=56.40  Aligned_cols=52  Identities=19%  Similarity=0.043  Sum_probs=45.3

Q ss_pred             ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC--C-CCCeEEecCCCCCCCC
Q psy6888          14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS--A-DAPMFVCGVNLDKFEW   65 (69)
Q Consensus        14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs--~-d~pt~V~GVN~~~y~~   65 (69)
                      .|+|.|+. ||.+.+++.+..|+++|++.|-+|++.  + +.|++|.+||++.+++
T Consensus        63 ~~~Dvvf~a~~~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpevN~~~i~~  118 (366)
T 3pwk_A           63 EGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDA  118 (366)
T ss_dssp             TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGTT
T ss_pred             cCCCEEEECCChHhHHHHHHHHHHCCCEEEEcCCccccCCCceEEEccCCHHHHcC
Confidence            37889886 999999999999999999887788885  3 4699999999998875

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.23  E-value=5e-05  Score=54.95  Aligned_cols=48  Identities=19%  Similarity=0.308  Sum_probs=41.2

Q ss_pred             cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-----CCCeEEecCCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-----DAPMFVCGVNLDKFE   64 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-----d~pt~V~GVN~~~y~   64 (69)
                      |+|.|++ ||.+.+++.+..|+++|+|  +|+.|++     +.|++|.++|++.|+
T Consensus        77 ~vDvVf~atp~~~s~~~a~~~~~aG~~--VId~s~~~R~~~~~~~~vpevn~~~~~  130 (350)
T 2ep5_A           77 DVDVVLSALPNELAESIELELVKNGKI--VVSNASPFRMDPDVPLINPEINWEHLE  130 (350)
T ss_dssp             TCSEEEECCCHHHHHHHHHHHHHTTCE--EEECSSTTTTCTTSCBCCHHHHGGGGG
T ss_pred             CCCEEEECCChHHHHHHHHHHHHCCCE--EEECCccccCCCCCCeeCCccCHHHhc
Confidence            7888887 9999999999999999988  5666654     468999999999886

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=97.10  E-value=0.0001  Score=54.09  Aligned_cols=52  Identities=19%  Similarity=0.158  Sum_probs=43.9

Q ss_pred             ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC---CCCCeEEecCCC-CCCCC
Q psy6888          14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS---ADAPMFVCGVNL-DKFEW   65 (69)
Q Consensus        14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs---~d~pt~V~GVN~-~~y~~   65 (69)
                      .|+|+|+. ||.+.+++.+..|+++|++.|-+|++.   ++.|++|.+||+ +.+++
T Consensus        62 ~~~Dvvf~a~~~~~s~~~a~~~~~~G~~vID~Sa~~R~~~~~p~~vpevN~~~~i~~  118 (344)
T 3tz6_A           62 SGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHR  118 (344)
T ss_dssp             TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTSHHHHTTC
T ss_pred             ccCCEEEECCChHHHHHHHHHHHhCCCEEEECCCccccCCCccEEEccCCCHHHhhh
Confidence            47888886 999999999999999999766677774   356999999999 87765

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.09  E-value=0.00013  Score=52.68  Aligned_cols=48  Identities=27%  Similarity=0.342  Sum_probs=41.8

Q ss_pred             cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-----CCCeEEecCCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-----DAPMFVCGVNLDKFE   64 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-----d~pt~V~GVN~~~y~   64 (69)
                      |+|.|++ ||.+.+++.+..|+++|+|  ||++|++     +.|+++.++|++.|+
T Consensus        83 ~~DvV~~atp~~~~~~~a~~~~~aG~~--VId~s~~~R~~~~~~~~vpevn~~~~~  136 (354)
T 1ys4_A           83 DVDIVFSALPSDLAKKFEPEFAKEGKL--IFSNASAYRMEEDVPLVIPEVNADHLE  136 (354)
T ss_dssp             TCCEEEECCCHHHHHHHHHHHHHTTCE--EEECCSTTTTCTTSCBCCHHHHGGGGG
T ss_pred             CCCEEEECCCchHHHHHHHHHHHCCCE--EEECCchhcCCCCCCccCcccCHHHhc
Confidence            8999987 9999999999999999987  6788874     368999999998886

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=97.07  E-value=0.00021  Score=52.45  Aligned_cols=50  Identities=16%  Similarity=0.156  Sum_probs=44.3

Q ss_pred             cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC---CCCeEEecCCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA---DAPMFVCGVNLDKFE   64 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~---d~pt~V~GVN~~~y~   64 (69)
                      ++|.|+. ||.+.+++.+..|+++|+|.|.+|++..   +.|.+|.+||.+.++
T Consensus        79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~  132 (359)
T 4dpk_A           79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTIS  132 (359)
T ss_dssp             TCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGG
T ss_pred             CCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHh
Confidence            7888886 9999999999999999999999999963   468999999998874

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=97.07  E-value=0.00021  Score=52.45  Aligned_cols=50  Identities=16%  Similarity=0.156  Sum_probs=44.3

Q ss_pred             cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC---CCCeEEecCCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA---DAPMFVCGVNLDKFE   64 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~---d~pt~V~GVN~~~y~   64 (69)
                      ++|.|+. ||.+.+++.+..|+++|+|.|.+|++..   +.|.+|.+||.+.++
T Consensus        79 ~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~  132 (359)
T 4dpl_A           79 DVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTIS  132 (359)
T ss_dssp             TCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGG
T ss_pred             CCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHh
Confidence            7888886 9999999999999999999999999963   468999999998874

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.82  E-value=0.00012  Score=53.37  Aligned_cols=53  Identities=13%  Similarity=0.021  Sum_probs=41.6

Q ss_pred             cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CC------------------CeEEecC---CCCCCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DA------------------PMFVCGV---NLDKFEWKEV   68 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~------------------pt~V~GV---N~~~y~~~~i   68 (69)
                      |+|.|++ ||.+.+++.+..| ++|++.|-+|++.. ++                  +++|||+   |++.+++..|
T Consensus        82 ~vDvVf~atp~~~s~~~a~~~-~aG~~VId~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~n~~~i~~~~i  157 (359)
T 1xyg_A           82 TVDAVFCCLPHGTTQEIIKEL-PTALKIVDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEILREDIKKARL  157 (359)
T ss_dssp             GCSEEEECCCTTTHHHHHHTS-CTTCEEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHHHHHHHTCSE
T ss_pred             CCCEEEEcCCchhHHHHHHHH-hCCCEEEECCccccCCchhhhhhhhcCCcCChhhcCCceEECCccCHHHhccCCE
Confidence            8899887 9999999999999 99997555666643 22                  5899999   9887765443

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.79  E-value=0.00016  Score=52.34  Aligned_cols=54  Identities=19%  Similarity=-0.037  Sum_probs=42.5

Q ss_pred             ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CC-----------------CeEEecC---CCCCCCCCC
Q psy6888          14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DA-----------------PMFVCGV---NLDKFEWKE   67 (69)
Q Consensus        14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~-----------------pt~V~GV---N~~~y~~~~   67 (69)
                      .|+|.|+. ||.+.+++.+..|+++|+|.|.+|++.. ++                 +++|||+   |++.++...
T Consensus        67 ~~vDvV~~a~g~~~s~~~a~~~~~aG~~VId~Sa~~r~~~~~~y~~~y~~h~~~e~l~~~vygvpE~n~~~i~~~~  142 (345)
T 2ozp_A           67 EPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYGEHPRPDLLGRFVYAVPELYREALKGAD  142 (345)
T ss_dssp             CCCSEEEECCCTTHHHHTHHHHHTTCSEEEECSSTTSCSCHHHHHHHHCCCSSGGGTTSSEECCHHHHHHHHHTCS
T ss_pred             cCCCEEEEcCCcHHHHHHHHHHHHCCCEEEEcCccccCCChHHHHhhhccccchhhhccCcEeccccCHHHhhcCC
Confidence            38888886 9999999999999999998555677643 22                 5899999   988776533

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.04  E-value=0.001  Score=48.49  Aligned_cols=54  Identities=15%  Similarity=0.068  Sum_probs=43.4

Q ss_pred             ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC--CC--C---------------CeEEecC---CCCCCCCCC
Q psy6888          14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS--AD--A---------------PMFVCGV---NLDKFEWKE   67 (69)
Q Consensus        14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs--~d--~---------------pt~V~GV---N~~~y~~~~   67 (69)
                      .++|.|+. ||.+.+++.+..|+++|+|.|-+|++.  +|  .               +++|||+   |++.++...
T Consensus        74 ~~~Dvvf~a~p~~~s~~~~~~~~~~g~~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglPEvn~~~i~~~~  150 (337)
T 3dr3_A           74 PGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLKEAN  150 (337)
T ss_dssp             TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCTTTCCHHHHTCS
T ss_pred             cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCccccCCcccchhhccccccChhhhcceEEEccccCHHHhCCCC
Confidence            37888886 999999999999999999988899996  23  1               2679999   887775443

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=95.97  E-value=0.0035  Score=46.53  Aligned_cols=51  Identities=18%  Similarity=0.211  Sum_probs=44.0

Q ss_pred             ccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCC--C-CCCeEEecCCCCCCC
Q psy6888          14 FKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPS--A-DAPMFVCGVNLDKFE   64 (69)
Q Consensus        14 ~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs--~-d~pt~V~GVN~~~y~   64 (69)
                      .++|.|+. +|-..+++.+..++++|++.|-+|++.  + |.|+++.+||.+.|.
T Consensus        92 ~~~Dvvf~alp~~~s~~~~~~~~~~G~~VIDlSa~fR~~~~vplvv~~vn~~~~~  146 (381)
T 3hsk_A           92 LECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKNYRREKDVPLVVPIVNPEHID  146 (381)
T ss_dssp             GGCSEEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCTTSCEECTTTCGGGGH
T ss_pred             ccCCEEEECCChhHHHHHHHHHHhCCCEEEEcCCcccCCCCCcEEecccCHHHcC
Confidence            37888886 999999999999999999988899986  2 468999999988774

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=94.87  E-value=0.0028  Score=46.32  Aligned_cols=50  Identities=10%  Similarity=0.023  Sum_probs=40.3

Q ss_pred             cceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CCCe-------------EEecC-----CCCCCCC
Q psy6888          15 KFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DAPM-------------FVCGV-----NLDKFEW   65 (69)
Q Consensus        15 ~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~pt-------------~V~GV-----N~~~y~~   65 (69)
                      |+|.|+. +|...+++.+..+ ++|++.|.+|+|.. +++.             ++||+     |.+.++.
T Consensus        80 ~~DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv~~n~~~i~~  149 (352)
T 2nqt_A           80 GHDAVFLALPHGHSAVLAQQL-SPETLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELPGARDQLRG  149 (352)
T ss_dssp             TCSEEEECCTTSCCHHHHHHS-CTTSEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTSTTHHHHHTT
T ss_pred             CCCEEEECCCCcchHHHHHHH-hCCCEEEEECCCccCCcchhhhhhccccCCCCeeEEecccccCHHHHhc
Confidence            7888887 9999999999999 99988777899875 3434             48999     8777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	69
d2czca2	172	c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosp	1e-04
d1cf2o1	171	c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosp	1e-04
d1u8fo1	169	c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosp	0.002

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.7 bits (82), Expect = 1e-04
 Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 2/29 (6%)

Query: 33  AHLAGGAKKVIISAPSADA--PMFVCGVN 59
            +   G K +      AD     FV   N
Sbjct: 98  LYEKAGVKAIFQGGEKADVAEVSFVAQAN 126

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

 Score = 35.3 bits (81), Expect = 1e-04
 Identities = 4/33 (12%), Positives = 9/33 (27%), Gaps = 2/33 (6%)

Query: 33  AHLAGGAKKVIISAPSADAP--MFVCGVNLDKF 63
            +   G K +       +     F    N ++ 
Sbjct: 97  MYKEKGIKAIFQGGEKHEDIGLSFNSLSNYEES 129

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

 Score = 31.8 bits (72), Expect = 0.002
 Identities = 25/31 (80%), Positives = 28/31 (90%)

Query: 33  AHLAGGAKKVIISAPSADAPMFVCGVNLDKF 63
           AHL GGAK+VIISAPSADAPMFV GVN +K+
Sbjct: 108 AHLQGGAKRVIISAPSADAPMFVMGVNHEKY 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	69
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.89
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.89
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.88
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.88
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.88
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.88
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.87
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.87
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.87
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.87
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.64
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.47
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.46

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=5.2e-25  Score=148.68  Aligned_cols=63  Identities=30%  Similarity=0.490  Sum_probs=59.5

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKEVF   69 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~i~   69 (69)
                      +||||-++|+|+|++ ||+|++++++++||++||||||+|||++| +||+||||||++|++++|+
T Consensus        80 ~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~d~~~~iV~GvN~~~~~~~~ii  144 (166)
T d1gado1          80 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIV  144 (166)
T ss_dssp             GGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCSCSEE
T ss_pred             HHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccccccCCEEEeCccccccCCCCEE
Confidence            699999999999997 99999999999999999999999999987 8999999999999987653

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=99.89  E-value=1.8e-24  Score=145.94  Aligned_cols=61  Identities=31%  Similarity=0.378  Sum_probs=57.7

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEWKE   67 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~~~   67 (69)
                      ++|||-.+|+++|++ ||+|++++++++||++||||||||||+++  +||+||||||++|+++|
T Consensus        83 ~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~~~d~tiV~GVN~~~~~~~~  146 (173)
T d1obfo1          83 AQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTD  146 (173)
T ss_dssp             GGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGGCCTTC
T ss_pred             HHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCCCCCCcceEEEecchhhcCCCC
Confidence            699999999999997 99999999999999999999999999975  69999999999999864

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.88  E-value=2.1e-24  Score=144.86  Aligned_cols=61  Identities=33%  Similarity=0.529  Sum_probs=57.9

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKE   67 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~   67 (69)
                      +++||-.+|+++|++ ||.|++++++++||++||||||+|||++| +||+||||||++|+++|
T Consensus        80 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd~~~tiV~GVN~~~~~~~~  142 (166)
T d2b4ro1          80 SQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQ  142 (166)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCTTC
T ss_pred             HHccccccCCCEEEEecccccchhhhhhhhccCCCEEEEecccccccceeeeecchhhcCCCC
Confidence            689999999999997 99999999999999999999999999975 89999999999999865

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=2.2e-24  Score=145.65  Aligned_cols=61  Identities=26%  Similarity=0.277  Sum_probs=57.9

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWKE   67 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~~   67 (69)
                      ++|||-.+|+|+|++ ||+|++++++++||++||||||||||++| ++|+||||||++|++++
T Consensus        81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~kd~~~tiV~GvN~~~~~~~~  143 (169)
T d1hdgo1          81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEH  143 (169)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTC
T ss_pred             hhCCccccCCCEEEEecceeccccchhhhccCCCceEEEecccCCCcceeEEecchhhcCCcC
Confidence            799999999999997 99999999999999999999999999976 67999999999999875

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=99.88  E-value=2.9e-24  Score=144.96  Aligned_cols=62  Identities=45%  Similarity=0.581  Sum_probs=59.1

Q ss_pred             ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCCC
Q psy6888           6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKE   67 (69)
Q Consensus         6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~~   67 (69)
                      .+||||-.+|+++|++ ||+|++++++++||++||||||||||++|+||+||||||++|++++
T Consensus        78 p~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d~~~iV~GVN~~~~~~~~  140 (169)
T d1dssg1          78 PENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDM  140 (169)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSSCBCCTTTSGGGCCTTC
T ss_pred             hHHCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCccccceeeecccccccCCCC
Confidence            3799999999999997 9999999999999999999999999999999999999999999864

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.88  E-value=3.8e-24  Score=144.39  Aligned_cols=62  Identities=27%  Similarity=0.383  Sum_probs=57.9

Q ss_pred             ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCC-CCCeEEecCCCCCCCCCC
Q psy6888           6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSA-DAPMFVCGVNLDKFEWKE   67 (69)
Q Consensus         6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~-d~pt~V~GVN~~~y~~~~   67 (69)
                      -++|||-.+|+++|++ ||+|++++++++||++||||||||||++ ++||+||||||+.|++++
T Consensus        81 p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~k~~~~tiV~GVN~~~~~~~~  144 (172)
T d1rm4a1          81 PVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHAD  144 (172)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCCBSSCCBCCTTTTGGGCCTTC
T ss_pred             hHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeecccccceeeEEeecchhhcCCCC
Confidence            3689999999999997 9999999999999999999999999996 479999999999999764

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=99.87  E-value=1.3e-23  Score=141.70  Aligned_cols=61  Identities=44%  Similarity=0.494  Sum_probs=58.6

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCCCCeEEecCCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSADAPMFVCGVNLDKFEWKE   67 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d~pt~V~GVN~~~y~~~~   67 (69)
                      +||||-.+|+++|++ ||+|++++.+++||++||||||+|||++|+||+||||||++|++++
T Consensus        81 ~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~d~~tiV~GvN~~~~~~~~  142 (169)
T d1u8fo1          81 SKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSL  142 (169)
T ss_dssp             GGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSSSCBCCTTTTGGGCCTTC
T ss_pred             hhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccccccceEEeecCHHHcCCCC
Confidence            799999999999997 9999999999999999999999999999999999999999999863

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=99.87  E-value=1.3e-23  Score=140.93  Aligned_cols=60  Identities=32%  Similarity=0.362  Sum_probs=56.9

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~   66 (69)
                      ++|||-.+|+++|++ ||.|++++++++||++||||||+|||++| +||+||||||++|+++
T Consensus        78 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd~~~~iV~GvN~~~y~~~  139 (168)
T d2g82a1          78 KEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPS  139 (168)
T ss_dssp             GGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTT
T ss_pred             HHCcccccCCceeEeccccccchHHhhhhhccccceeeeccccccccceeEeeccHHHccCC
Confidence            689999999999997 99999999999999999999999999976 6899999999999974

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.87  E-value=7.4e-24  Score=144.60  Aligned_cols=60  Identities=28%  Similarity=0.381  Sum_probs=56.8

Q ss_pred             cccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888           7 DEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWK   66 (69)
Q Consensus         7 ~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~   66 (69)
                      ++|||..+|+++|++ ||+|+++++++.||++||||||||||+++ +||+||||||++|+++
T Consensus        95 ~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~~~~tiV~GVN~~~y~~~  156 (190)
T d1k3ta1          95 ADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPS  156 (190)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCCTT
T ss_pred             hHCCHhhcCCcEEEEecccccccccchhhcccCcceeeeccCCcccCCeEEeccCHhhcCCc
Confidence            689999999999997 99999999999999999999999999874 7999999999999974

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=99.87  E-value=1.5e-23  Score=141.63  Aligned_cols=61  Identities=33%  Similarity=0.342  Sum_probs=57.1

Q ss_pred             ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC-CCeEEecCCCCCCCCC
Q psy6888           6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD-APMFVCGVNLDKFEWK   66 (69)
Q Consensus         6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d-~pt~V~GVN~~~y~~~   66 (69)
                      .++|||..+|+++|++ ||+|++++++++||++||||||||||++| ++|+||||||++|+++
T Consensus        79 p~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~d~~~t~V~GvN~~~~~~~  141 (171)
T d3cmco1          79 PENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPK  141 (171)
T ss_dssp             GGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCTT
T ss_pred             HHHccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecccccccceeeeccchheecCC
Confidence            3789999999999997 99999999999999999999999999987 5699999999999964

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.64  E-value=3.8e-18  Score=113.69  Aligned_cols=62  Identities=16%  Similarity=0.062  Sum_probs=53.9

Q ss_pred             ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCCCC
Q psy6888           6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEWKE   67 (69)
Q Consensus         6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~~~   67 (69)
                      ..+++|-..++|+|++ ||.|+++++++.|+++|||+||+|+|++|  ++||||||||++|.+++
T Consensus        70 ~~~~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~~~~~~t~v~GvNh~~~~~~~  134 (172)
T d2czca2          70 AGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKN  134 (172)
T ss_dssp             SCBHHHHHTTCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCGGGSSEEECHHHHGGGGTTCS
T ss_pred             cchhhhhhccCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCcccCCCeeEecccchhhcCCC
Confidence            3456666679999997 99999999999999999999999999875  47999999999987654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.47  E-value=1.3e-15  Score=102.01  Aligned_cols=59  Identities=12%  Similarity=-0.023  Sum_probs=50.3

Q ss_pred             eecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC---CCeEEecCCCCCCC
Q psy6888           5 VRDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD---APMFVCGVNLDKFE   64 (69)
Q Consensus         5 ~~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d---~pt~V~GVN~~~y~   64 (69)
                      +-..++|-..++|+|++ ||.|+++++++.|+++| ||||+|+|+++   ++||||||||++|.
T Consensus        67 v~g~~~~~~~~vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~~~~~~~~~t~V~GvN~~~~~  129 (178)
T d1b7go1          67 VAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGGEKAEVADISFSALCNYNEAL  129 (178)
T ss_dssp             CCCCHHHHHHHCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTSCGGGSSCEECHHHHHHHHT
T ss_pred             cCCchhhhhhcCCEEEECCCCcCCHHHHHHHHHcC-CEEEEECCCCccccCCeEEeCcchHHhc
Confidence            34467787889999997 99999999999999999 68889999763   45999999999864

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=99.46  E-value=8.2e-16  Score=102.26  Aligned_cols=62  Identities=10%  Similarity=-0.041  Sum_probs=48.8

Q ss_pred             ecccccccccceeeEe-eeceecHHHHHHHhhCCCCeEEEcCCCCC--CCeEEecCCCCCCCCCC
Q psy6888           6 RDEIKSTSFKFLIFLV-LFLSVNNILQTAHLAGGAKKVIISAPSAD--APMFVCGVNLDKFEWKE   67 (69)
Q Consensus         6 ~~~i~~t~~~~~~~~~-tG~~~t~e~a~~HL~~GAKkVIISaPs~d--~pt~V~GVN~~~y~~~~   67 (69)
                      ..+++|...++|+|++ ||.|+++++++.|+++|+|+|++++|++|  +.+|||||||++|.+++
T Consensus        69 ~g~~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~~~~~~~~~v~GvN~~~~~~~~  133 (171)
T d1cf2o1          69 AGTVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEKHEDIGLSFNSLSNYEESYGKD  133 (171)
T ss_dssp             CEEHHHHHHTCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCHHHHSCEECHHHHHHHHTTCS
T ss_pred             CCChhHhhcCCCEEEEccCCCCCHHHHHHHHHcCCCEEEECCCCccCCCceeEeccChhhhcCCC
Confidence            3455666678999997 99999999999999999865555455444  45899999999987643