Psyllid ID: psy6925

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL
Secondary Structure (PSIPRED)
cccEEEEEEEEcccEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccHHHcHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEcccEccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccHccHHHcccEEEEEHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccEcHHHHccc
Coil and Loop (DISEMBL)
MSTYLVAVVVGEFDyveetssdgvlvrvytpvgkreqgqFALHVASKVLpfykdyfniayplpkidlvavpdfscgamenwgLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL
Flexible Loop (DISEMBL)
MSTYLVAVVVGEfdyveetssdgvlVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL
Low Complexity Region (SEG)
MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL
Disordered region (IsUnstruct)
***YLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWT**
Disordered Region (DISOPRED)
MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL
Disordered Region (DISEMBL)
MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL
Disordered Region (DISPRO)
*STYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
P55786	919	Puromycin-sensitive amino	yes	N/A	1.0	0.142	0.763	1e-57
Q11011	920	Puromycin-sensitive amino	yes	N/A	1.0	0.142	0.763	2e-57
A6NEC2	478	Puromycin-sensitive amino	no	N/A	0.992	0.271	0.746	6e-55
Q9EQH2	930	Endoplasmic reticulum ami	no	N/A	1.0	0.140	0.572	4e-40
Q9NZ08	941	Endoplasmic reticulum ami	no	N/A	1.0	0.139	0.564	1e-39
Q9JJ22	930	Endoplasmic reticulum ami	no	N/A	1.0	0.140	0.564	3e-39
A6QPT7	954	Endoplasmic reticulum ami	no	N/A	1.0	0.137	0.557	1e-38
Q10737	972	Aminopeptidase N OS=Haemo	N/A	N/A	1.0	0.134	0.511	3e-38
P37898	856	Alanine/arginine aminopep	yes	N/A	0.992	0.151	0.572	4e-38
Q5RFP3	960	Endoplasmic reticulum ami	no	N/A	1.0	0.136	0.541	8e-38

>sp|P55786|PSA_HUMAN Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2

 Score =  221 bits (562), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 100/131 (76%), Positives = 114/131 (87%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA VVGE+D+VE  S DGV VRVYTPVGK EQG+FAL VA+K LPFYKDYFN+ Y
Sbjct: 241 MSTYLVAFVVGEYDFVETRSKDGVCVRVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPY 300

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPKIDL+A+ DF+ GAMENWGLVTYRE  LL+D +N+ + +RQ +ALVVGHELAHQWFG
Sbjct: 301 PLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFG 360

Query: 121 NLVTMEWWTHL 131
           NLVTMEWWTHL
Sbjct: 361 NLVTMEWWTHL 371

Aminopeptidase with broad substrate specificity for several peptides. Involved in proteolytic events essential for cell growth and viability. May act as regulator of neuropeptide activity. Plays a role in the antigen-processing pathway for MHC class I molecules. Involved in the N-terminal trimming of cytotoxic T-cell epitope precursors. Digests the poly-Q peptides found in many cellular proteins. Digests tau from normal brain more efficiently than tau from Alzheimer disease brain.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 4

>sp|Q11011|PSA_MOUSE Puromycin-sensitive aminopeptidase OS=Mus musculus GN=Npepps PE=1 SV=2

 Score =  220 bits (561), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 100/131 (76%), Positives = 114/131 (87%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA VVGE+D+VE  S DGV VRVYTPVGK EQG+FAL VA+K LPFYKDYFN+ Y
Sbjct: 242 MSTYLVAFVVGEYDFVETRSKDGVCVRVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPY 301

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPKIDL+A+ DF+ GAMENWGLVTYRE  LL+D +N+ + +RQ +ALVVGHELAHQWFG
Sbjct: 302 PLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFG 361

Query: 121 NLVTMEWWTHL 131
           NLVTMEWWTHL
Sbjct: 362 NLVTMEWWTHL 372

Aminopeptidase with broad substrate specificity for several peptides. Involved in proteolytic events essential for cell growth and viability. May act as regulator of neuropeptide activity. Plays a role in the antigen-processing pathway for MHC class I molecules. Involved in the N-terminal trimming of cytotoxic T-cell epitope precursors. Digests the poly-Q peptides found in many cellular proteins.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 4

>sp|A6NEC2|PSAL_HUMAN Puromycin-sensitive aminopeptidase-like protein OS=Homo sapiens GN=NPEPPSL1 PE=2 SV=3

 Score =  212 bits (539), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 111/130 (85%)

Query: 2   STYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYP 61
           STYLVA VVGE+D+VE  S DGV V VYTPVGK EQG+FAL VA+K LPFYKDYFN+ YP
Sbjct: 242 STYLVAFVVGEYDFVETRSKDGVCVCVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPYP 301

Query: 62  LPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGN 121
           LPKIDL+A+ DF+ GAMENW LVTYRE  LL+D +N+ + +RQ +ALVVGHELAHQWFGN
Sbjct: 302 LPKIDLIAIADFAAGAMENWDLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFGN 361

Query: 122 LVTMEWWTHL 131
           LVTMEWWTHL
Sbjct: 362 LVTMEWWTHL 371

Aminopeptidase with broad substrate specificity to several peptides.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9EQH2|ERAP1_MOUSE Endoplasmic reticulum aminopeptidase 1 OS=Mus musculus GN=Erap1 PE=2 SV=2

 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 90/131 (68%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA ++ +F  V + +  GV V VY    K  Q  +AL  A  +L FY+DYFNI Y
Sbjct: 231 MSTYLVAFIISDFKSVSKMTKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFNIPY 290

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPK DL A+PDF  GAMENWGL TYRE  LL D + +SA ++  I ++V HELAHQWFG
Sbjct: 291 PLPKQDLAAIPDFQSGAMENWGLTTYRESSLLYDKEKSSASSKLGITMIVSHELAHQWFG 350

Query: 121 NLVTMEWWTHL 131
           NLVTMEWW  L
Sbjct: 351 NLVTMEWWNDL 361

Aminopeptidase that plays a central role in peptide trimming, a step required for the generation of most HLA class I-binding peptides. Peptide trimming is essential to customize longer precursor peptides to fit them to the correct length required for presentation on MHC class I molecules. Strongly prefers substrates 9-16 residues long. Rapidly degrades 13-mer to a 9-mer and then stops. Preferentially hydrolyzes the residue Leu and peptides with a hydrophobic C-terminus, while it has weak activity toward peptides with charged C-terminus. May play a role in the inactivation of peptide hormones. May be involved in the regulation of blood pressure through the inactivation of angiotensin II and/or the generation of bradykinin in the kidney.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9NZ08|ERAP1_HUMAN Endoplasmic reticulum aminopeptidase 1 OS=Homo sapiens GN=ERAP1 PE=1 SV=3

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/131 (56%), Positives = 91/131 (69%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA ++ +F+ V + +  GV V VY    K  Q  +AL  A  +L FY+DYF+I Y
Sbjct: 242 MSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPY 301

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPK DL A+PDF  GAMENWGL TYRE  LL D++ +SA ++  I + V HELAHQWFG
Sbjct: 302 PLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFG 361

Query: 121 NLVTMEWWTHL 131
           NLVTMEWW  L
Sbjct: 362 NLVTMEWWNDL 372

Aminopeptidase that plays a central role in peptide trimming, a step required for the generation of most HLA class I-binding peptides. Peptide trimming is essential to customize longer precursor peptides to fit them to the correct length required for presentation on MHC class I molecules. Strongly prefers substrates 9-16 residues long. Rapidly degrades 13-mer to a 9-mer and then stops. Preferentially hydrolyzes the residue Leu and peptides with a hydrophobic C-terminus, while it has weak activity toward peptides with charged C-terminus. May play a role in the inactivation of peptide hormones. May be involved in the regulation of blood pressure through the inactivation of angiotensin II and/or the generation of bradykinin in the kidney.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9JJ22|ERAP1_RAT Endoplasmic reticulum aminopeptidase 1 OS=Rattus norvegicus GN=Erap1 PE=2 SV=2

 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/131 (56%), Positives = 89/131 (67%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA ++ +F  V + +  GV V VY    K  Q  +AL  A  +L FY+DYF+I Y
Sbjct: 231 MSTYLVAFIISDFKSVSKMTKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPY 290

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPK DL A+PDF  GAMENWGL TYRE  LL D + +SA ++  I + V HELAHQWFG
Sbjct: 291 PLPKQDLAAIPDFQSGAMENWGLTTYRESALLYDKEKSSASSKLGITMTVSHELAHQWFG 350

Query: 121 NLVTMEWWTHL 131
           NLVTMEWW  L
Sbjct: 351 NLVTMEWWNDL 361

Aminopeptidase that plays a central role in peptide trimming, a step required for the generation of most HLA class I-binding peptides. Peptide trimming is essential to customize longer precursor peptides to fit them to the correct length required for presentation on MHC class I molecules. Strongly prefers substrates 9-16 residues long. Rapidly degrades 13-mer to a 9-mer and then stops. Preferentially hydrolyzes the residue Leu and peptides with a hydrophobic C-terminus, while it has weak activity toward peptides with charged C-terminus. May play a role in the inactivation of peptide hormones. May be involved in the regulation of blood pressure through the inactivation of angiotensin II and/or the generation of bradykinin in the kidney.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|A6QPT7|ERAP2_BOVIN Endoplasmic reticulum aminopeptidase 2 OS=Bos taurus GN=ERAP2 PE=2 SV=1

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/131 (55%), Positives = 93/131 (70%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA +V +F  V  T+S GV V +Y    K  Q  +AL  + K+L FY++YF+I Y
Sbjct: 253 MSTYLVAYIVCDFTSVSGTASSGVKVSIYASPDKWSQTHYALEASVKLLDFYENYFDIHY 312

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPK+DLVA+PDF+ GAMENWGL+TYRE  LL D + +S   +  +  V+ HELAHQWFG
Sbjct: 313 PLPKLDLVAIPDFASGAMENWGLITYRETSLLFDPKTSSTSDKLWVTKVIAHELAHQWFG 372

Query: 121 NLVTMEWWTHL 131
           NLVTMEWW  +
Sbjct: 373 NLVTMEWWNDI 383

Aminopeptidase that plays a central role in peptide trimming, a step required for the generation of most HLA class I-binding peptides. Peptide trimming is essential to customize longer precursor peptides to fit them to the correct length required for presentation on MHC class I molecules. Preferentially hydrolyzes the basic residues Arg and Lys.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q10737|AMPN_HAECO Aminopeptidase N OS=Haemonchus contortus PE=2 SV=2

 Score =  157 bits (396), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/131 (51%), Positives = 96/131 (73%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MS+YL+AV+V EF+Y+E  +  GV  R+++    ++  Q+AL    K + FY+D+F+I +
Sbjct: 268 MSSYLLAVMVSEFEYIEGETKTGVRFRIWSRPEAKKMTQYALQSGIKCIEFYEDFFDIRF 327

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PL K D++A+PDFS GAMENWGL+TYRE  LL D +  + + +Q IA +V HELAHQWFG
Sbjct: 328 PLKKQDMIALPDFSAGAMENWGLITYRENSLLYDDRFYAPMNKQRIARIVAHELAHQWFG 387

Query: 121 NLVTMEWWTHL 131
           +LVTM+WW +L
Sbjct: 388 DLVTMKWWDNL 398

Haemonchus contortus (taxid: 6289)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

>sp|P37898|AAP1_YEAST Alanine/arginine aminopeptidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AAP1 PE=1 SV=2

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 99/131 (75%), Gaps = 1/131 (0%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA +V +  YVE +++  + VRVY+  G  + GQFA ++A++ L F++D FNI Y
Sbjct: 190 MSTYLVAFIVADLRYVE-SNNFRIPVRVYSTPGDEKFGQFAANLAARTLRFFEDTFNIEY 248

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPK+D+VAV +FS GAMENWGLVTYR + LL+D +N+S    Q +A V+ HELAHQWFG
Sbjct: 249 PLPKMDMVAVHEFSAGAMENWGLVTYRVIDLLLDIENSSLDRIQRVAEVIQHELAHQWFG 308

Query: 121 NLVTMEWWTHL 131
           NLVTM+WW  L
Sbjct: 309 NLVTMDWWEGL 319

Positive effector of glycogen accumulation. May be involved in nutrient-sensing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q5RFP3|ERAP2_PONAB Endoplasmic reticulum aminopeptidase 2 OS=Pongo abelii GN=ERAP2 PE=2 SV=1

 Score =  155 bits (391), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 92/131 (70%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA +V +F  V   +S GV V +Y    K+ Q  +AL  + K+L FY+ YF+I Y
Sbjct: 259 MSTYLVAYIVCDFHSVSGITSSGVKVSIYASPDKQNQTHYALQASLKLLDFYEKYFDIYY 318

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PL K+DL+A+PDF+ GAMENWGL+TYRE  LL D + +SA  +  +  V+ HELAHQWFG
Sbjct: 319 PLSKLDLIAIPDFASGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFG 378

Query: 121 NLVTMEWWTHL 131
           NLVTMEWW  +
Sbjct: 379 NLVTMEWWNDI 389

Aminopeptidase that plays a central role in peptide trimming, a step required for the generation of most HLA class I-binding peptides. Peptide trimming is essential to customize longer precursor peptides to fit them to the correct length required for presentation on MHC class I molecules. Preferentially hydrolyzes the basic residues Arg and Lys.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
345486260	958	PREDICTED: puromycin-sensitive aminopept	1.0	0.136	0.816	8e-61
380013202	836	PREDICTED: puromycin-sensitive aminopept	1.0	0.156	0.839	1e-60
242015848	876	Aminopeptidase N precursor, putative [Pe	1.0	0.149	0.809	2e-60
270016293	742	aminopeptidase-like protein [Tribolium c	1.0	0.176	0.832	2e-60
189242399	713	PREDICTED: similar to AGAP005728-PA, par	1.0	0.183	0.832	3e-60
357619269	866	putative Aminopeptidase N precursor [Dan	1.0	0.151	0.832	4e-60
66499419	867	PREDICTED: puromycin-sensitive aminopept	1.0	0.151	0.832	5e-60
340716768	867	PREDICTED: puromycin-sensitive aminopept	1.0	0.151	0.832	5e-60
389568604	944	aminopeptidase N-10 [Bombyx mori]	1.0	0.138	0.816	5e-60
350421831	867	PREDICTED: puromycin-sensitive aminopept	1.0	0.151	0.832	6e-60

>gi|345486260|ref|XP_001599897.2| PREDICTED: puromycin-sensitive aminopeptidase-like [Nasonia vitripennis]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 107/131 (81%), Positives = 120/131 (91%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA+V+GEFDY+E+ SSDGVLVRVYTP GK+EQG+FALHVA+KVLP+YK YF+I Y
Sbjct: 286 MSTYLVAIVIGEFDYIEDRSSDGVLVRVYTPKGKQEQGRFALHVATKVLPYYKSYFDIPY 345

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPKIDL+A+ DFS GAMENWGLVTYRE CLLVD  NTSA+ +Q IALVVGHELAHQWFG
Sbjct: 346 PLPKIDLIAIADFSAGAMENWGLVTYRETCLLVDPHNTSAVVKQWIALVVGHELAHQWFG 405

Query: 121 NLVTMEWWTHL 131
           NLVTMEWWTHL
Sbjct: 406 NLVTMEWWTHL 416

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013202|ref|XP_003690655.1| PREDICTED: puromycin-sensitive aminopeptidase [Apis florea]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 110/131 (83%), Positives = 119/131 (90%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVAVVVGEFDY+E+TSSDGVLVRVYTP  K+EQGQFAL VA+KVLP+YK YF IAY
Sbjct: 197 MSTYLVAVVVGEFDYIEDTSSDGVLVRVYTPKSKKEQGQFALEVATKVLPYYKTYFGIAY 256

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPKIDL+A+ DFS GAMENWGLVTYRE CLLVD QNTSA+ +Q IALVV HELAHQWFG
Sbjct: 257 PLPKIDLIAIADFSSGAMENWGLVTYRETCLLVDPQNTSAVRKQWIALVVAHELAHQWFG 316

Query: 121 NLVTMEWWTHL 131
           NLVTMEWWTHL
Sbjct: 317 NLVTMEWWTHL 327

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015848|ref|XP_002428559.1| Aminopeptidase N precursor, putative [Pediculus humanus corporis] gi|212513193|gb|EEB15821.1| Aminopeptidase N precursor, putative [Pediculus humanus corporis]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/131 (80%), Positives = 122/131 (93%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVAVV+GE+DY+E+ S DGV+VRVYTPVGK+EQG+FAL VA+KVLP+YK+YFNIAY
Sbjct: 202 MSTYLVAVVIGEYDYIEDVSKDGVIVRVYTPVGKKEQGKFALEVATKVLPYYKEYFNIAY 261

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPKIDL+A+ DFS GAMENWGLVTYRE CLLVD +NTSA ++Q IA+VVGHELAHQWFG
Sbjct: 262 PLPKIDLIAIADFSAGAMENWGLVTYRETCLLVDPKNTSASSKQWIAIVVGHELAHQWFG 321

Query: 121 NLVTMEWWTHL 131
           NLVTMEWWTHL
Sbjct: 322 NLVTMEWWTHL 332

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270016293|gb|EFA12739.1| aminopeptidase-like protein [Tribolium castaneum]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 119/131 (90%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA VVGE+DYVE+ S+DGV VRVYTP GK+EQG FAL VA+KVLP+YKDYFNIAY
Sbjct: 181 MSTYLVACVVGEYDYVEDKSTDGVQVRVYTPRGKKEQGLFALEVATKVLPYYKDYFNIAY 240

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPKIDL+A+ DFS GAMENWGLVTYRE CLLVD QNTSA+ +Q IALVVGHELAHQWFG
Sbjct: 241 PLPKIDLIAIADFSAGAMENWGLVTYRETCLLVDPQNTSAVQKQWIALVVGHELAHQWFG 300

Query: 121 NLVTMEWWTHL 131
           NLVTMEWWTHL
Sbjct: 301 NLVTMEWWTHL 311

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189242399|ref|XP_968099.2| PREDICTED: similar to AGAP005728-PA, partial [Tribolium castaneum]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 119/131 (90%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA VVGE+DYVE+ S+DGV VRVYTP GK+EQG FAL VA+KVLP+YKDYFNIAY
Sbjct: 154 MSTYLVACVVGEYDYVEDKSTDGVQVRVYTPRGKKEQGLFALEVATKVLPYYKDYFNIAY 213

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPKIDL+A+ DFS GAMENWGLVTYRE CLLVD QNTSA+ +Q IALVVGHELAHQWFG
Sbjct: 214 PLPKIDLIAIADFSAGAMENWGLVTYRETCLLVDPQNTSAVQKQWIALVVGHELAHQWFG 273

Query: 121 NLVTMEWWTHL 131
           NLVTMEWWTHL
Sbjct: 274 NLVTMEWWTHL 284

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357619269|gb|EHJ71913.1| putative Aminopeptidase N precursor [Danaus plexippus]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 121/131 (92%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVAVVVGE+DYVE+TS DGVLVRVYTPVGK +QG FAL VA+KVLP+YK+YF+IAY
Sbjct: 197 MSTYLVAVVVGEYDYVEKTSRDGVLVRVYTPVGKSKQGMFALEVAAKVLPYYKEYFDIAY 256

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPKIDL+A+ DFS GAMENWGLVTYRE CLLVD ++TSA+ RQ IALVVGHELAHQWFG
Sbjct: 257 PLPKIDLIAIADFSAGAMENWGLVTYRETCLLVDEEHTSAVRRQWIALVVGHELAHQWFG 316

Query: 121 NLVTMEWWTHL 131
           NLVTMEWWTHL
Sbjct: 317 NLVTMEWWTHL 327

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66499419|ref|XP_394245.2| PREDICTED: puromycin-sensitive aminopeptidase isoform 1 [Apis mellifera]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVAVVVGEFDY+E+ SSDGVLVRVYTP  K+EQGQFAL VA+KVLP+YK YF IAY
Sbjct: 197 MSTYLVAVVVGEFDYIEDKSSDGVLVRVYTPKSKKEQGQFALEVATKVLPYYKTYFGIAY 256

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPKIDL+A+ DFS GAMENWGLVTYRE CLLVD QNTSA+ +Q IALVV HELAHQWFG
Sbjct: 257 PLPKIDLIAIADFSSGAMENWGLVTYRETCLLVDPQNTSAVRKQWIALVVAHELAHQWFG 316

Query: 121 NLVTMEWWTHL 131
           NLVTMEWWTHL
Sbjct: 317 NLVTMEWWTHL 327

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716768|ref|XP_003396865.1| PREDICTED: puromycin-sensitive aminopeptidase-like [Bombus terrestris]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVAVVVGEFDY+E+ SSDGVLVRVYTP  K+EQGQFAL VA+KVLP+YK YF IAY
Sbjct: 197 MSTYLVAVVVGEFDYIEDKSSDGVLVRVYTPKSKKEQGQFALEVATKVLPYYKTYFGIAY 256

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPKIDL+A+ DFS GAMENWGLVTYRE CLLVD QNTSA+ +Q IALVV HELAHQWFG
Sbjct: 257 PLPKIDLIAIADFSSGAMENWGLVTYRETCLLVDPQNTSAVRKQWIALVVAHELAHQWFG 316

Query: 121 NLVTMEWWTHL 131
           NLVTMEWWTHL
Sbjct: 317 NLVTMEWWTHL 327

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389568604|gb|AFK85026.1| aminopeptidase N-10 [Bombyx mori]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 107/131 (81%), Positives = 121/131 (92%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVAVVVGE+DYVE+ S+DG+LVRVYTPVGK +QG FAL VA++VLP+YKDYF+IAY
Sbjct: 275 MSTYLVAVVVGEYDYVEKKSNDGILVRVYTPVGKSKQGLFALEVAARVLPYYKDYFDIAY 334

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPKIDL+A+ DFS GAMENWGLVTYRE CLLVD ++TSA+ RQ IALVVGHELAHQWFG
Sbjct: 335 PLPKIDLIAIADFSAGAMENWGLVTYRETCLLVDEEHTSAVRRQWIALVVGHELAHQWFG 394

Query: 121 NLVTMEWWTHL 131
           NLVTMEWWTHL
Sbjct: 395 NLVTMEWWTHL 405

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421831|ref|XP_003492971.1| PREDICTED: puromycin-sensitive aminopeptidase-like [Bombus impatiens]

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 118/131 (90%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVAVVVGEFDY+E+ SSDGVLVRVYTP  K+EQGQFAL VA+KVLP+YK YF IAY
Sbjct: 197 MSTYLVAVVVGEFDYIEDKSSDGVLVRVYTPKSKKEQGQFALEVATKVLPYYKTYFGIAY 256

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPKIDL+A+ DFS GAMENWGLVTYRE CLLVD QNTSA+ +Q IALVV HELAHQWFG
Sbjct: 257 PLPKIDLIAIADFSSGAMENWGLVTYRETCLLVDPQNTSAVRKQWIALVVAHELAHQWFG 316

Query: 121 NLVTMEWWTHL 131
           NLVTMEWWTHL
Sbjct: 317 NLVTMEWWTHL 327

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
FB|FBgn0261243	1075	Psa "Puromycin sensitive amino	1.0	0.121	0.801	7.6e-55
UNIPROTKB|F1P455	394	NPEPPS "Uncharacterized protei	1.0	0.332	0.770	7e-54
UNIPROTKB|F1P456	837	NPEPPS "Uncharacterized protei	1.0	0.156	0.770	1.7e-53
UNIPROTKB|B7Z463	839	NPEPPS "cDNA FLJ53354, highly	1.0	0.156	0.763	3.8e-53
ZFIN|ZDB-GENE-060524-3	925	npepps "aminopeptidase puromyc	1.0	0.141	0.763	4.6e-53
UNIPROTKB|F1P7M0	860	NPEPPS "Uncharacterized protei	1.0	0.152	0.763	4.7e-53
UNIPROTKB|E9PLK3	915	NPEPPS "Puromycin-sensitive am	1.0	0.143	0.763	7.1e-53
UNIPROTKB|P55786	919	NPEPPS "Puromycin-sensitive am	1.0	0.142	0.763	7.3e-53
MGI|MGI:1101358	920	Npepps "aminopeptidase puromyc	1.0	0.142	0.763	7.4e-53
UNIPROTKB|F1M9V7	920	Npepps "Protein Npepps" [Rattu	1.0	0.142	0.763	7.4e-53

FB|FBgn0261243 Psa "Puromycin sensitive aminopeptidase" [Drosophila melanogaster (taxid:7227)]

 Score = 575 (207.5 bits), Expect = 7.6e-55, P = 7.6e-55
 Identities = 105/131 (80%), Positives = 118/131 (90%)

Query:     1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
             MSTYLVAVVVGE+DYVE  S DGVLVRV+TPVGKREQG FAL VA+KVLP+YKDYFNIAY
Sbjct:   404 MSTYLVAVVVGEYDYVEGKSDDGVLVRVFTPVGKREQGTFALEVATKVLPYYKDYFNIAY 463

Query:    61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
             PLPK+DL+A+ DFS GAMENWGLVTYRE  +LVD +NTS + +Q+IAL VGHE+AHQWFG
Sbjct:   464 PLPKMDLIAISDFSAGAMENWGLVTYRETFVLVDPKNTSLMRKQSIALTVGHEIAHQWFG 523

Query:   121 NLVTMEWWTHL 131
             NLVTMEWWTHL
Sbjct:   524 NLVTMEWWTHL 534

GO:0004177 "aminopeptidase activity" evidence=IEA;NAS

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1P455 NPEPPS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 101/131 (77%), Positives = 115/131 (87%)

Query:     1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
             MSTYLVA VVGE+D+VE  S DGVLVRVYTPVGK EQG+FAL VA+K LPFYKDYFN+ Y
Sbjct:   158 MSTYLVAFVVGEYDFVETRSLDGVLVRVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPY 217

Query:    61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
             PLPKIDL+A+ DF+ GAMENWGLVTYRE  LL+D +N+ + +RQ +ALVVGHELAHQWFG
Sbjct:   218 PLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFG 277

Query:   121 NLVTMEWWTHL 131
             NLVTMEWWTHL
Sbjct:   278 NLVTMEWWTHL 288

GO:0004177 "aminopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1P456 NPEPPS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 557 (201.1 bits), Expect = 1.7e-53, P = 1.7e-53
 Identities = 101/131 (77%), Positives = 115/131 (87%)

Query:     1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
             MSTYLVA VVGE+D+VE  S DGVLVRVYTPVGK EQG+FAL VA+K LPFYKDYFN+ Y
Sbjct:   158 MSTYLVAFVVGEYDFVETRSLDGVLVRVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPY 217

Query:    61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
             PLPKIDL+A+ DF+ GAMENWGLVTYRE  LL+D +N+ + +RQ +ALVVGHELAHQWFG
Sbjct:   218 PLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFG 277

Query:   121 NLVTMEWWTHL 131
             NLVTMEWWTHL
Sbjct:   278 NLVTMEWWTHL 288

GO:0004177 "aminopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|B7Z463 NPEPPS "cDNA FLJ53354, highly similar to Puromycin-sensitive aminopeptidase (EC 3.4.11.-)" [Homo sapiens (taxid:9606)]

 Score = 554 (200.1 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 100/131 (76%), Positives = 114/131 (87%)

Query:     1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
             MSTYLVA VVGE+D+VE  S DGV VRVYTPVGK EQG+FAL VA+K LPFYKDYFN+ Y
Sbjct:   161 MSTYLVAFVVGEYDFVETRSKDGVCVRVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPY 220

Query:    61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
             PLPKIDL+A+ DF+ GAMENWGLVTYRE  LL+D +N+ + +RQ +ALVVGHELAHQWFG
Sbjct:   221 PLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFG 280

Query:   121 NLVTMEWWTHL 131
             NLVTMEWWTHL
Sbjct:   281 NLVTMEWWTHL 291

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004177 "aminopeptidase activity" evidence=IEA

ZFIN|ZDB-GENE-060524-3 npepps "aminopeptidase puromycin sensitive" [Danio rerio (taxid:7955)]

 Score = 556 (200.8 bits), Expect = 4.6e-53, P = 4.6e-53
 Identities = 100/131 (76%), Positives = 115/131 (87%)

Query:     1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
             MSTYLVA V+GE+D+VE  SSDGV VRVYTPVGK EQG+FAL VA+K LPFYKDYF++ Y
Sbjct:   249 MSTYLVAFVIGEYDFVESQSSDGVTVRVYTPVGKAEQGKFALEVATKTLPFYKDYFSVPY 308

Query:    61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
             PLPKIDL+A+ DF+ GAMENWGLVTYRE  LL+D +N+ A +RQ +ALVVGHELAHQWFG
Sbjct:   309 PLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCASSRQWVALVVGHELAHQWFG 368

Query:   121 NLVTMEWWTHL 131
             NLVTMEWWTHL
Sbjct:   369 NLVTMEWWTHL 379

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0004177 "aminopeptidase activity" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1P7M0 NPEPPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 554 (200.1 bits), Expect = 4.7e-53, P = 4.7e-53
 Identities = 100/131 (76%), Positives = 114/131 (87%)

Query:     1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
             MSTYLVA VVGE+D+VE  S DGV VRVYTPVGK EQG+FAL VA+K LPFYKDYFN+ Y
Sbjct:   182 MSTYLVAFVVGEYDFVETRSKDGVCVRVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPY 241

Query:    61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
             PLPKIDL+A+ DF+ GAMENWGLVTYRE  LL+D +N+ + +RQ +ALVVGHELAHQWFG
Sbjct:   242 PLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFG 301

Query:   121 NLVTMEWWTHL 131
             NLVTMEWWTHL
Sbjct:   302 NLVTMEWWTHL 312

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004177 "aminopeptidase activity" evidence=IEA

UNIPROTKB|E9PLK3 NPEPPS "Puromycin-sensitive aminopeptidase" [Homo sapiens (taxid:9606)]

 Score = 554 (200.1 bits), Expect = 7.1e-53, P = 7.1e-53
 Identities = 100/131 (76%), Positives = 114/131 (87%)

Query:     1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
             MSTYLVA VVGE+D+VE  S DGV VRVYTPVGK EQG+FAL VA+K LPFYKDYFN+ Y
Sbjct:   237 MSTYLVAFVVGEYDFVETRSKDGVCVRVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPY 296

Query:    61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
             PLPKIDL+A+ DF+ GAMENWGLVTYRE  LL+D +N+ + +RQ +ALVVGHELAHQWFG
Sbjct:   297 PLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFG 356

Query:   121 NLVTMEWWTHL 131
             NLVTMEWWTHL
Sbjct:   357 NLVTMEWWTHL 367

GO:0004177 "aminopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|P55786 NPEPPS "Puromycin-sensitive aminopeptidase" [Homo sapiens (taxid:9606)]

 Score = 554 (200.1 bits), Expect = 7.3e-53, P = 7.3e-53
 Identities = 100/131 (76%), Positives = 114/131 (87%)

Query:     1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
             MSTYLVA VVGE+D+VE  S DGV VRVYTPVGK EQG+FAL VA+K LPFYKDYFN+ Y
Sbjct:   241 MSTYLVAFVVGEYDFVETRSKDGVCVRVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPY 300

Query:    61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
             PLPKIDL+A+ DF+ GAMENWGLVTYRE  LL+D +N+ + +RQ +ALVVGHELAHQWFG
Sbjct:   301 PLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFG 360

Query:   121 NLVTMEWWTHL 131
             NLVTMEWWTHL
Sbjct:   361 NLVTMEWWTHL 371

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004177 "aminopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0071456 "cellular response to hypoxia" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

MGI|MGI:1101358 Npepps "aminopeptidase puromycin sensitive" [Mus musculus (taxid:10090)]

 Score = 554 (200.1 bits), Expect = 7.4e-53, P = 7.4e-53
 Identities = 100/131 (76%), Positives = 114/131 (87%)

Query:     1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
             MSTYLVA VVGE+D+VE  S DGV VRVYTPVGK EQG+FAL VA+K LPFYKDYFN+ Y
Sbjct:   242 MSTYLVAFVVGEYDFVETRSKDGVCVRVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPY 301

Query:    61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
             PLPKIDL+A+ DF+ GAMENWGLVTYRE  LL+D +N+ + +RQ +ALVVGHELAHQWFG
Sbjct:   302 PLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFG 361

Query:   121 NLVTMEWWTHL 131
             NLVTMEWWTHL
Sbjct:   362 NLVTMEWWTHL 372

GO:0004177 "aminopeptidase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0071456 "cellular response to hypoxia" evidence=ISO

UNIPROTKB|F1M9V7 Npepps "Protein Npepps" [Rattus norvegicus (taxid:10116)]

 Score = 554 (200.1 bits), Expect = 7.4e-53, P = 7.4e-53
 Identities = 100/131 (76%), Positives = 114/131 (87%)

Query:     1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
             MSTYLVA VVGE+D+VE  S DGV VRVYTPVGK EQG+FAL VA+K LPFYKDYFN+ Y
Sbjct:   242 MSTYLVAFVVGEYDFVETRSKDGVCVRVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPY 301

Query:    61 PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
             PLPKIDL+A+ DF+ GAMENWGLVTYRE  LL+D +N+ + +RQ +ALVVGHELAHQWFG
Sbjct:   302 PLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFG 361

Query:   121 NLVTMEWWTHL 131
             NLVTMEWWTHL
Sbjct:   362 NLVTMEWWTHL 372

GO:0004177 "aminopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0071456 "cellular response to hypoxia" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q11011	PSA_MOUSE	3, ., 4, ., 1, 1, ., 1, 4	0.7633	1.0	0.1423	yes	N/A
Q9USX1	APE1_SCHPO	3, ., 4, ., 1, 1, ., -	0.5333	0.9923	0.1473	yes	N/A
P37898	AAP1_YEAST	3, ., 4, ., 1, 1, ., -	0.5725	0.9923	0.1518	yes	N/A
Q10730	AMPN_LACHE	3, ., 4, ., 1, 1, ., 2	0.5151	1.0	0.1552	yes	N/A
Q10736	AMPN_ACEPA	3, ., 4, ., 1, 1, ., 2	0.5075	0.9923	0.3661	yes	N/A
P55786	PSA_HUMAN	3, ., 4, ., 1, 1, ., 1, 4	0.7633	1.0	0.1425	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.11	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	131
cd09601	446	cd09601, M1_APN_2, Peptidase M1 Aminopeptidase N f	2e-85
pfam01433	390	pfam01433, Peptidase_M1, Peptidase family M1	2e-74
COG0308	859	COG0308, PepN, Aminopeptidase N [Amino acid transp	6e-51
cd09602	438	cd09602, M1_APN_3, Peptidase M1 family containing	1e-33
TIGR02412	831	TIGR02412, pepN_strep_liv, aminopeptidase N, Strep	2e-27
cd09603	415	cd09603, M1_APN_4, Peptidase M1 family Aminopeptid	5e-26
cd09595	407	cd09595, M1, Peptidase M1 family contains aminopep	9e-26
TIGR02414	863	TIGR02414, pepN_proteo, aminopeptidase N, Escheric	1e-22
cd09600	861	cd09600, M1_APN_1, Peptidase M1 family containing	2e-20
cd09604	435	cd09604, M1_APN_5, Peptidase M1 family containing	9e-13
PRK14015	875	PRK14015, pepN, aminopeptidase N; Provisional	1e-09
cd09599	442	cd09599, M1_LTA4H, Peptidase M1 family contains le	1e-07
TIGR02411	602	TIGR02411, leuko_A4_hydro, leukotriene A-4 hydrola	2e-07
pfam13485	128	pfam13485, Peptidase_MA_2, Peptidase MA superfamil	9e-04

>gnl|CDD|189008 cd09601, M1_APN_2, Peptidase M1 Aminopeptidase N family incudes tricorn interacting factor F3, Endoplasmic reticulum aminopeptidase 1 (ERAP1), Aminopeptidase Q (APQ)

 Score =  255 bits (655), Expect = 2e-85
 Identities = 88/131 (67%), Positives = 104/131 (79%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA VVG+FDYVE T+ +GV VRVY   GK EQG +AL VA K+L F++DYF I Y
Sbjct: 181 MSTYLVAFVVGDFDYVEGTTKNGVPVRVYARPGKIEQGDYALEVAPKILEFFEDYFGIPY 240

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPK+DLVA+PDF+ GAMENWGL+TYRE  LL D + +SA  +Q +A VV HELAHQWFG
Sbjct: 241 PLPKLDLVAIPDFAAGAMENWGLITYRETALLYDPKTSSASNKQRVATVVAHELAHQWFG 300

Query: 121 NLVTMEWWTHL 131
           NLVTM+WW  L
Sbjct: 301 NLVTMKWWDDL 311

This M1 peptidase family includes eukaryotic and bacterial members: aminopeptidase N (APN), aminopeptidase Q (APQ, laeverin), endoplasmic reticulum aminopeptidase 1 (ERAP1) as well as tricorn interacting factor F3. Aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC 3.4.11.2), a Type II integral membrane protease, consists of a small N-terminal cytoplasmic domain, a single transmembrane domain and a large extracellular ectodomain that contains the active site. It preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is considered a marker of differentiation since it is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. ERAP1 also known as endoplasmic reticulum aminopeptidase associated with antigen processing (ERAAP), adipocyte derived leucine aminopeptidase (A-LAP) or aminopeptidase regulating tumor necrosis factor receptor I (THFRI) shedding (ARTS-1), associates with the closely related ER aminopeptidase ERAP2, for the final trimming of peptides within the ER for presentation by MHC class I molecules. ERAP1 is associated with ankylosing spondylitis (AS), an inflammatory arthritis that predominantly affects the spine. ERAP1 also aids in the shedding of membrane-bound cytokine receptors. The tricorn interacting factor F3, together with factors F1 and F2, degrades the tricorn protease products, producing free amino acids, thus completing the proteasomal degradation pathway. F3 is homologous to F2, but not F1, and shows a strong preference for glutamate in the P1' position. APQ, also known as laeverin, is specifically expressed in human embryo-derived extravillous trophoblasts (EVTs) that invade the uterus during early placentation. It cleaves the N-terminal amino acid of various peptides such as angiotensin III, endokinin C, and kisspeptin-10, all expressed in the placenta in large quantities. APN is a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs are also putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established. Length = 446

>gnl|CDD|216501 pfam01433, Peptidase_M1, Peptidase family M1

 Score =  226 bits (577), Expect = 2e-74
 Identities = 76/131 (58%), Positives = 95/131 (72%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYL+A  VG+ +Y+E  +  GV VRVY   G    GQ+AL V  K+L F++DYF   Y
Sbjct: 190 MSTYLLAFAVGDLEYLETKTKSGVPVRVYARPGAINAGQYALEVTQKLLEFFEDYFGFPY 249

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPK+D VA+PDFS GAMENWGL+TYRE  LL D  N+++  +Q +A V+ HELAHQWFG
Sbjct: 250 PLPKLDQVALPDFSAGAMENWGLITYREPALLYDPGNSTSSDKQRVAEVIAHELAHQWFG 309

Query: 121 NLVTMEWWTHL 131
           NLVTM+WW  L
Sbjct: 310 NLVTMDWWDDL 320

Members of this family are aminopeptidases. The members differ widely in specificity, hydrolysing acidic, basic or neutral N-terminal residues. This family includes leukotriene-A4 hydrolase, this enzyme also has an aminopeptidase activity. Length = 390

>gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and metabolism]

 Score =  171 bits (436), Expect = 6e-51
 Identities = 64/134 (47%), Positives = 87/134 (64%), Gaps = 4/134 (2%)

Query: 1   MSTYLVAVVVGEFDYVEE---TSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFN 57
           M TYL A+V G+ +   +   T S  V + +Y P G  ++ ++AL    + + FY++YF 
Sbjct: 200 MPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFG 259

Query: 58  IAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQ 117
           + Y LP  D+VAVPDFS GAMENWGLVT+RE  LL D +  +    +N+  V+ HELAHQ
Sbjct: 260 LPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAHQ 318

Query: 118 WFGNLVTMEWWTHL 131
           WFGNLVTM+WW  L
Sbjct: 319 WFGNLVTMKWWDDL 332

Length = 859

>gnl|CDD|189009 cd09602, M1_APN_3, Peptidase M1 family containing Aminopeptidase N

 Score =  120 bits (304), Expect = 1e-33
 Identities = 51/135 (37%), Positives = 74/135 (54%), Gaps = 12/135 (8%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLP-------FYK 53
           +STYL A V G +  + +   DG+ + +Y    +    Q     A ++         F++
Sbjct: 175 LSTYLFAFVAGPYHVISDKEHDGIPLGLYC---RESLAQALDRDADEIFEITKQGLDFFE 231

Query: 54  DYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHE 113
           +YF I YP  K D V VP+F+ GAMEN G VT+RE   +   + T+A  R   A  + HE
Sbjct: 232 EYFGIPYPFGKYDQVFVPEFNFGAMENPGCVTFREN-YVFREEVTTAQ-RLRRANTIAHE 289

Query: 114 LAHQWFGNLVTMEWW 128
           +AH WFG+LVTM+WW
Sbjct: 290 MAHMWFGDLVTMKWW 304

This family contains bacterial and eukaryotic aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC 3.4.11.2), a Type II integral membrane protease belonging to the M1 gluzincin family. APN consists of a small N-terminal cytoplasmic domain, a single transmembrane domain and a large extracellular ectodomain that contains the active site. It preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets, Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established. Length = 438

>gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans type

 Score =  105 bits (263), Expect = 2e-27
 Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQ--GQFALHVASKVLPFYKDYFNI 58
           +STYL AV  G + +  +  S    + +Y      +         +  + L F+   F  
Sbjct: 183 LSTYLTAVAAGPY-HSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGY 241

Query: 59  AYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW 118
            YP  K D + VP+F+ GAMEN G VT+ E   L  ++ T A  ++N A V+ HE+AH W
Sbjct: 242 PYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAEATRA-EKENRAGVILHEMAHMW 299

Query: 119 FGNLVTMEWWTHL 131
           FG+LVTM WW  L
Sbjct: 300 FGDLVTMRWWNDL 312

This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site). Length = 831

>gnl|CDD|189010 cd09603, M1_APN_4, Peptidase M1 family Aminopeptidase N

 Score =   99 bits (250), Expect = 5e-26
 Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 10/131 (7%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           M+TYLV + VG ++ +E+T++ GV V  Y P G     + A     ++L F+++ F   Y
Sbjct: 170 MATYLVTLAVGRYEVLEDTTAGGVPVVYYVPPGLAADARRAFARTPEMLDFFEELF-GPY 228

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           P  K   V V DF  G MEN     Y    L  D  +           ++ HELAHQWFG
Sbjct: 229 PFEKYGQVVVDDFLGGGMENQTRTVYGAGFLDGDRSSER---------LIAHELAHQWFG 279

Query: 121 NLVTMEWWTHL 131
           + VT   W+ +
Sbjct: 280 DSVTCADWSDI 290

This family contains mostly bacterial and some archaeal aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC 3.4.11.2), a Type II integral membrane protease belonging to the M1 gluzincin family. APN consists of a small N-terminal cytoplasmic domain, a single transmembrane domain and a large extracellular ectodomain that contains the active site. It preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets, Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established. Length = 415

>gnl|CDD|189002 cd09595, M1, Peptidase M1 family contains aminopeptidase N and leukotriene A4 hydrolase

 Score = 99.4 bits (248), Expect = 9e-26
 Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 8/132 (6%)

Query: 1   MSTYLVAVVVGEFDY-VEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIA 59
           ++ YL+A+VVG+ +Y V E +  G+ + +Y            L  A     FY+      
Sbjct: 169 IAPYLIALVVGDLEYPVREQTVQGIPLHLYFLTPLAVDTVLRLQSAFL---FYETDLGGP 225

Query: 60  YPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
           YP  + D+V VP+F  GAMEN GL+ + +  LL           + +  V+ HELAHQWF
Sbjct: 226 YPYSEYDVVEVPEFPSGAMENPGLIFFSQSLLLAMIDAGD----ELLENVIAHELAHQWF 281

Query: 120 GNLVTMEWWTHL 131
           GNLVT   W  L
Sbjct: 282 GNLVTGARWNDL 293

M1 Peptidase family includes aminopeptidase N (APN) and leukotriene A4 hydrolase (LTA4H). All peptidases in this family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. APN consists of a small N-terminal cytoplasmic domain, a single transmembrane domain and a large extracellular ectodomain that contains the active site. It preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and is present in a variety of human tissues and cell types. APN expression is dysregulated in many inflammatory diseases and is enhanced in numerous tumor cells, making it a lead target in the development of anti-cancer and anti-inflammatory drugs. LTA4H is a bifunctional enzyme, possessing an aminopeptidase as well as an epoxide hydrolase activity. The two activities occupy different, but overlapping sites. The activity and physiological relevance of the aminopeptidase in LTA4H is as yet unknown while the epoxide hydrolase converts leukotriene A4 (LTA4) into leukotriene B4 (LTB4), a potent chemotaxin that is fundamental to the inflammatory response of mammals. Length = 407

>gnl|CDD|233858 TIGR02414, pepN_proteo, aminopeptidase N, Escherichia coli type

 Score = 92.0 bits (229), Expect = 1e-22
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 4   YLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIA 59
           YL A+V G+ D +E+T    S   V +RVY   G +++   A+    K + + ++ F + 
Sbjct: 177 YLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLE 236

Query: 60  YPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
           Y L    +VAV DF+ GAMEN GL  +    +L D +  +    + I  V+ HE  H W 
Sbjct: 237 YDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWT 296

Query: 120 GNLVTMEWWTHL 131
           GN VT   W  L
Sbjct: 297 GNRVTCRDWFQL 308

The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile (see SP|P04825 for a description of catalytic activity). This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 863

>gnl|CDD|189007 cd09600, M1_APN_1, Peptidase M1 family containing Aminopeptidase N

 Score = 85.0 bits (211), Expect = 2e-20
 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 4/132 (3%)

Query: 4   YLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIA 59
           YL A+V G+   +E+     S   V + +Y   G   +   A+    K + + +D F + 
Sbjct: 177 YLFALVAGDLGVLEDKFTTKSGRKVALEIYVEPGDESKCAHAMESLKKSMKWDEDRFGLE 236

Query: 60  YPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
           Y L   ++VAV DF+ GAMEN GL  +    +L D +  +    + I  V+GHE  H W 
Sbjct: 237 YDLDLFNIVAVDDFNMGAMENKGLNIFNSKLVLADPETATDADYERIESVIGHEYFHNWT 296

Query: 120 GNLVTMEWWTHL 131
           GN VT   W  L
Sbjct: 297 GNRVTCRDWFQL 308

This family contains aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC 3.4.11.2), a Type II integral membrane protease belonging to the M1 gluzincin family. It includes bacterial-type alanyl aminopeptidases as well as PfA-M1 aminopeptidase (Plasmodium falciparum-type). APN consists of a small N-terminal cytoplasmic domain, a single transmembrane domain and a large extracellular ectodomain that contains the active site. It preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets, Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established. Length = 861

>gnl|CDD|189011 cd09604, M1_APN_5, Peptidase M1 family containing bacterial Aminopeptidase N

 Score = 63.1 bits (154), Expect = 9e-13
 Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 14/118 (11%)

Query: 7   AVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKID 66
           A+       V+E + DG+ VR Y      E  +  L  A K L FY + F   YP  +  
Sbjct: 201 ALAASPKFIVDEATVDGIKVRAYYFPEDAELAKRYLDAAKKALEFYSELF-GPYPYKEFS 259

Query: 67  LVAVPDFSCGAMENWGLVT-YREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLV 123
           +V  P    G ME  GL      V  L     T          V+ HE+AHQW+  +V
Sbjct: 260 VVENPFP--GGMEYPGLTLIGGRVLRLPFILET----------VLAHEIAHQWWYGIV 305

This family contains bacterial aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC 3.4.11.2), a Type II integral membrane protease belonging to the M1 gluzincin family. APN consists of a small N-terminal cytoplasmic domain, a single transmembrane domain and a large extracellular ectodomain that contains the active site. It preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets, Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established. Length = 435

>gnl|CDD|237585 PRK14015, pepN, aminopeptidase N; Provisional

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 30/138 (21%)

Query: 4   YLVAVVVGEFDYVEE---TSSDG--VLVRVYTPVGKREQGQFALHVASKVLPFYK----- 53
           YL A+V G+ D +E+   T S G  V + +Y   G  ++   A+   S  L   K     
Sbjct: 190 YLFALVAGDLDVLEDTFTTRS-GREVALEIYVEPGNLDKCDHAM--DS--L---KKSMKW 241

Query: 54  --DYFNIAYPLPKIDL-----VAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNI 106
             + F + Y     DL     VAV DF+ GAMEN GL  +    +L D +  +    + I
Sbjct: 242 DEERFGLEY-----DLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERI 296

Query: 107 ALVVGHELAHQWFGNLVT 124
             V+ HE  H W GN VT
Sbjct: 297 ESVIAHEYFHNWTGNRVT 314

Length = 875

>gnl|CDD|189006 cd09599, M1_LTA4H, Peptidase M1 family contains leukotriene A4 hydrolase

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 67  LVAVPDFSCGAMENWGLVTYREVCLLV-DSQNTSAITRQNIALVVGHELAHQWFGNLVTM 125
           LV  P F  G MEN  L T+    L+  D              VV HE+AH W GNLVT 
Sbjct: 252 LVLPPSFPYGGMENPCL-TFATPTLIAGDRSLVD---------VVAHEIAHSWSGNLVTN 301

Query: 126 EWWTHL 131
             W H 
Sbjct: 302 ATWEHF 307

This family includes leukotriene A4 hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog cold-active aminopeptidase (Colwellia psychrerythraea-type peptidase; ColAP), both members of the aminopeptidase M1 family. LTA4H, is a bifunctional enzyme possessing an aminopeptidase as well as an epoxide hydrolase activity. The two activities occupy different, but overlapping sites. The activity and physiological relevance of the aminopeptidase is as yet unknown while the epoxide hydrolase converts leukotriene A4 (LTA4) into leukotriene B4 (LTB4), a potent chemotaxin that is fundamental to the inflammatory response of mammals. It accepts a variety of substrates, including some opioid, di- and tripeptides, as well as chromogenic aminoacyl-p-nitroanilide derivatives. The aminopeptidase activity of LTA4H is possibly involved in the processing of peptides related to inflammation and host defense. Kinetic analysis shows that LTA4H hydrolyzes arginyl tripeptides with high efficiency and specificity, indicating its function as an arginyl aminopeptidase. LTA4H is overexpressed in certain human cancers, and has been identified as a functionally important target for mediating anticancer properties of resveratrol, a well known red wine polyphenolic compound with cancer chemopreventive activity. Length = 442

>gnl|CDD|233856 TIGR02411, leuko_A4_hydro, leukotriene A-4 hydrolase/aminopeptidase

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 67  LVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTME 126
           LV  P F  G MEN  L T+    L+       A  R N+  V+ HELAH W GNLVT  
Sbjct: 249 LVLPPSFPYGGMENPNL-TFATPTLI-------AGDRSNVD-VIAHELAHSWSGNLVTNC 299

Query: 127 WWTH 130
            W H
Sbjct: 300 SWEH 303

Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known. Length = 602

>gnl|CDD|222169 pfam13485, Peptidase_MA_2, Peptidase MA superfamily

 Score = 36.4 bits (84), Expect = 9e-04
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 80  NWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL 131
             G V Y    L+V     +      +  V+ HELAH   GNLV        
Sbjct: 1   WTGGVYYPGSRLIVP--RVAPGDPDELRGVLAHELAHVVLGNLVGGNGNLPR 50

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
KOG1046|consensus	882		100.0
TIGR02414	863	pepN_proteo aminopeptidase N, Escherichia coli typ	100.0
PRK14015	875	pepN aminopeptidase N; Provisional	100.0
PF01433	390	Peptidase_M1: Peptidase family M1 This is family M	100.0
TIGR02412	831	pepN_strep_liv aminopeptidase N, Streptomyces livi	100.0
COG0308	859	PepN Aminopeptidase N [Amino acid transport and me	100.0
TIGR02411	601	leuko_A4_hydro leukotriene A-4 hydrolase/aminopept	100.0
KOG1047|consensus	613		99.94
KOG1932|consensus	1180		99.76
COG3975	558	Predicted protease with the C-terminal PDZ domain	98.1
PF13485	128	Peptidase_MA_2: Peptidase MA superfamily	96.63
PRK04860	160	hypothetical protein; Provisional	96.3
smart00731	146	SprT SprT homologues. Predicted to have roles in t	95.33
PF01863	205	DUF45: Protein of unknown function DUF45; InterPro	94.94
PF12725	318	DUF3810: Protein of unknown function (DUF3810); In	94.23
COG4783	484	Putative Zn-dependent protease, contains TPR repea	94.19
PRK03001	283	M48 family peptidase; Provisional	92.78
PRK03982	288	heat shock protein HtpX; Provisional	92.54
PF06114	122	DUF955: Domain of unknown function (DUF955); Inter	92.32
PF01435	226	Peptidase_M48: Peptidase family M48 This is family	92.29
PRK04351	149	hypothetical protein; Provisional	92.03
PF01447	150	Peptidase_M4: Thermolysin metallopeptidase, cataly	91.35
PRK01345	317	heat shock protein HtpX; Provisional	91.28
PF13699	79	DUF4157: Domain of unknown function (DUF4157)	91.22
cd04269	194	ZnMc_adamalysin_II_like Zinc-dependent metalloprot	91.16
COG1451	223	Predicted metal-dependent hydrolase [General funct	90.91
cd04272	220	ZnMc_salivary_gland_MPs Zinc-dependent metalloprot	90.6
PF10026	195	DUF2268: Predicted Zn-dependent protease (DUF2268)	90.52
PRK04897	298	heat shock protein HtpX; Provisional	90.37
PRK02391	296	heat shock protein HtpX; Provisional	90.3
PHA02456	141	zinc metallopeptidase motif-containing protein	90.22
cd04279	156	ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM	89.71
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	89.53
PF01421	199	Reprolysin: Reprolysin (M12B) family zinc metallop	88.91
PF13574	173	Reprolysin_2: Metallo-peptidase family M12B Reprol	88.8
PRK01265	324	heat shock protein HtpX; Provisional	88.59
PRK05457	284	heat shock protein HtpX; Provisional	88.1
PF10460	366	Peptidase_M30: Peptidase M30; InterPro: IPR019501	86.62
PF08325	186	WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1	86.42
COG3091	156	SprT Zn-dependent metalloprotease, SprT family [Ge	86.32
PRK02870	336	heat shock protein HtpX; Provisional	85.89
PRK03072	288	heat shock protein HtpX; Provisional	85.24
KOG2661|consensus	424		84.62
KOG2719|consensus	428		84.45
KOG3607|consensus	716		83.32
PF13688	196	Reprolysin_5: Metallo-peptidase family M12; PDB: 2	81.44
COG0501	302	HtpX Zn-dependent protease with chaperone function	80.71
COG4324	376	Predicted aminopeptidase [General function predict	80.68

>KOG1046|consensus

Probab=100.00  E-value=3.9e-42  Score=270.84  Aligned_cols=131  Identities=68%  Similarity=1.141  Sum_probs=127.9

Q ss_pred             CCceeeeeEEecceEeeeeecCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhh
Q psy6925           1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMEN   80 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~   80 (131)
                      ||||++||+||+|...+..+.+|+++++|++|+...+.+++++.+++.+++|+++||+|||.+|+|+|++|++..|+|||
T Consensus       219 MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMEN  298 (882)
T KOG1046|consen  219 MSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMEN  298 (882)
T ss_pred             CchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhc
Confidence            89999999999999998888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          81 WGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        81 ~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      +|+++|++..+|+++..++..++++++.+||||+|||||||+||++||+||
T Consensus       299 wGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dL  349 (882)
T KOG1046|consen  299 WGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDL  349 (882)
T ss_pred             CcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhh
Confidence            999999999999999999999999999999999999999999999999986

>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type

Probab=100.00  E-value=1.3e-38  Score=249.56  Aligned_cols=131  Identities=34%  Similarity=0.594  Sum_probs=120.3

Q ss_pred             CCceeeeeEEecceEeeee----ecCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCc
Q psy6925           1 MSTYLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCG   76 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~   76 (131)
                      ||+|+|||++|+|+++++.    .++++++++|++|+..+..+++++.+++++++||++||.|||++|+++|++|++..|
T Consensus       174 mptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~G  253 (863)
T TIGR02414       174 KPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMG  253 (863)
T ss_pred             cChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCc
Confidence            7999999999999998753    234689999999998888899999999999999999999999999999999999999


Q ss_pred             chhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          77 AMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        77 ~me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      ||||+|+++|++..++.++...+...+..+..+++||+|||||||+||++||+|+
T Consensus       254 aMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~L  308 (863)
T TIGR02414       254 AMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQL  308 (863)
T ss_pred             cccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhh
Confidence            9999999999999998888776777788888999999999999999999999875

The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.

>PRK14015 pepN aminopeptidase N; Provisional

Probab=100.00  E-value=3.7e-38  Score=247.42  Aligned_cols=131  Identities=33%  Similarity=0.565  Sum_probs=119.3

Q ss_pred             CCceeeeeEEecceEeeee----ecCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCc
Q psy6925           1 MSTYLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCG   76 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~   76 (131)
                      ||+||++|++|+|+++++.    .++++++++|++|+..+.++.+++.++++|++||++||.|||++++++|++|++..|
T Consensus       187 mpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~G  266 (875)
T PRK14015        187 KPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMG  266 (875)
T ss_pred             cccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCc
Confidence            7999999999999998753    224599999999999888899999999999999999998899999999999999999


Q ss_pred             chhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          77 AMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        77 ~me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      ||||+|+++|++..++.+++..+..++..+..+|+||+|||||||+||++||+|+
T Consensus       267 aMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dL  321 (875)
T PRK14015        267 AMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQL  321 (875)
T ss_pred             ccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhh
Confidence            9999999999999888887766666777788999999999999999999999885

>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification

Probab=100.00  E-value=2.2e-38  Score=231.82  Aligned_cols=131  Identities=56%  Similarity=1.009  Sum_probs=115.2

Q ss_pred             CCceeeeeEEecceEeeeeecCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhh
Q psy6925           1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMEN   80 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~   80 (131)
                      ||+|++||++|+|...+....+++++++|++|+..+..+.+++.+++++++|+++||+|||++|+++|++|++..+|||+
T Consensus       190 ~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~  269 (390)
T PF01433_consen  190 MPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMEN  269 (390)
T ss_dssp             EEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--
T ss_pred             cCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeEEEEeccccccccc
Confidence            78999999999999987766556999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          81 WGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        81 ~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      +|+++++++.++++++..+...+..+..+||||+|||||||+||+++|+|+
T Consensus       270 ~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~  320 (390)
T PF01433_consen  270 WGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDL  320 (390)
T ss_dssp             TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGH
T ss_pred             cccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhh
Confidence            999999999999999888888889999999999999999999999999984

; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....

>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type

Probab=100.00  E-value=6.3e-38  Score=246.55  Aligned_cols=128  Identities=37%  Similarity=0.675  Sum_probs=113.3

Q ss_pred             CCceeeeeEEecceEeeeeecCCeEEEEEecCCccch--HHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCcch
Q psy6925           1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQ--GQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAM   78 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~m   78 (131)
                      ||||+++|++|+|+.++.. .+|+++++|++|+..+.  .+.+++.+++++++|+++||+||||+|+++|++|++..|||
T Consensus       183 mstYL~a~~vG~f~~~~~~-~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaM  261 (831)
T TIGR02412       183 LSTYLTAVAAGPYHSVQDE-SRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAM  261 (831)
T ss_pred             cccceEEEEEeceEEEeec-CCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCcc
Confidence            8999999999999998764 47899999999987654  56789999999999999999999999999999999999999


Q ss_pred             hhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          79 ENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        79 e~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      ||+|++++++.. +.++. .+...++.+..+++||+|||||||+||++||+|+
T Consensus       262 En~Glit~~e~~-l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dl  312 (831)
T TIGR02412       262 ENAGCVTFAENF-LHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDL  312 (831)
T ss_pred             cccceeeechhh-ccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccch
Confidence            999999999984 44433 3355667788999999999999999999999985

This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).

>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-35  Score=232.80  Aligned_cols=130  Identities=48%  Similarity=0.950  Sum_probs=121.2

Q ss_pred             CCceeeeeEEecceEeeeeec---CCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCcc
Q psy6925           1 MSTYLVAVVVGEFDYVEETSS---DGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGA   77 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~   77 (131)
                      ||||||++++|+|++.++...   +++++++|++++....+++.++.+++++++++++||+|||+++ ++|.+|++..|+
T Consensus       200 mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~Ga  278 (859)
T COG0308         200 MPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGA  278 (859)
T ss_pred             cchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCcc
Confidence            899999999999998877642   4899999999987888999999999999999999999999999 899999999999


Q ss_pred             hhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          78 MENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        78 me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      |||+|++++++..++.++...+...++++.++++||+|||||||+||++||+|+
T Consensus       279 MEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~l  332 (859)
T COG0308         279 MENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDL  332 (859)
T ss_pred             ccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHH
Confidence            999999999999988888788888889999999999999999999999999985

>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase

Probab=100.00  E-value=2.3e-33  Score=214.26  Aligned_cols=117  Identities=30%  Similarity=0.514  Sum_probs=98.2

Q ss_pred             CCceeeeeEEecceEeeeeecCCeEEEEEecCCccchHHHHHH-HHHHHHHHHHHhhccccCCCcccEEEe-cCCCCcch
Q psy6925           1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALH-VASKVLPFYKDYFNIAYPLPKIDLVAV-PDFSCGAM   78 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~yP~~~~~~v~~-p~~~~~~m   78 (131)
                      ||+||+||+||+|+..+    .|.++++|++|+..+.++..+. .++++++++|+++| ||||+|+|+|++ |+++.|||
T Consensus       186 mptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgM  260 (601)
T TIGR02411       186 IPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGM  260 (601)
T ss_pred             cchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCccccccc
Confidence            89999999999998753    4667999999988777777777 89999999999887 999999999887 68999999


Q ss_pred             hhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          79 ENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        79 e~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      ||+|++ +.+..++.+. .      . ...++|||+|||||||+||++||+|+
T Consensus       261 EN~~lt-f~~~~ll~~d-~------s-~~~viaHElAHqWfGNlVT~~~W~d~  304 (601)
T TIGR02411       261 ENPNLT-FATPTLIAGD-R------S-NVDVIAHELAHSWSGNLVTNCSWEHF  304 (601)
T ss_pred             ccccce-eeccccccCC-h------h-hhhhHHHHHHhhccCceeecCCchHH
Confidence            999965 4555455432 1      1 24699999999999999999999984

Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.

>KOG1047|consensus

Probab=99.94  E-value=9.1e-28  Score=176.76  Aligned_cols=117  Identities=31%  Similarity=0.507  Sum_probs=100.4

Q ss_pred             CCceeeeeEEecceEeeeeecCCeEEEEEecCCccchHHHHHH-HHHHHHHHHHHhhccccCCCcccEEEec-CCCCcch
Q psy6925           1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALH-VASKVLPFYKDYFNIAYPLPKIDLVAVP-DFSCGAM   78 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~yP~~~~~~v~~p-~~~~~~m   78 (131)
                      +|+|++||++|+....+    -|.+.+||+.|...+.++.-+. .+.++|..-|+.+| ||+|++||++++| +|++|||
T Consensus       195 IP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDllvlPpSFP~gGM  269 (613)
T KOG1047|consen  195 IPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDLLVLPPSFPFGGM  269 (613)
T ss_pred             chhhhHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceEEEecCCCCcccc
Confidence            58999999999997653    3667899999999888877666 89999999999999 9999999999885 8999999


Q ss_pred             hhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          79 ENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        79 e~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      |||.+++...+. |.. +.       ....+|||||||.||||+||.++|++.
T Consensus       270 ENPcltF~TpTl-laG-Dr-------sl~~vIaHEIAHSWtGNlVTN~sWehf  313 (613)
T KOG1047|consen  270 ENPCLTFVTPTL-LAG-DR-------SLVDVIAHEIAHSWTGNLVTNASWEHF  313 (613)
T ss_pred             cCcceeeecchh-hcC-Cc-------chhhHHHHHhhhhhcccccccCccchh
Confidence            999999988873 332 22       224699999999999999999999873

>KOG1932|consensus

Probab=99.76  E-value=1.4e-18  Score=136.28  Aligned_cols=126  Identities=17%  Similarity=0.242  Sum_probs=106.7

Q ss_pred             CCceeeeeEEecceEeeeeecCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhh
Q psy6925           1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMEN   80 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~   80 (131)
                      |++..++||||+|+....  +.+++|..+|.|+.+..++...-.+.++++|||+.+|+.|||+.|++|++|.....-+.+
T Consensus       241 vA~~~I~~AiG~F~~~~~--P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~  318 (1180)
T KOG1932|consen  241 VAPSNIGFAIGPFKSYVE--PSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSY  318 (1180)
T ss_pred             CCccccceeeccccccCC--CccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeec
Confidence            467789999999998854  458899999999999999999999999999999999988999999999999766666777


Q ss_pred             hchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          81 WGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        81 ~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      .++.+++.+ +|++.+..++  .......++-.+|.||||.++||.+|+|.
T Consensus       319 asl~I~st~-lLy~~~iIDq--~~~tr~~La~aLA~Q~fg~yIsp~~wsD~  366 (1180)
T KOG1932|consen  319 ASLSIFSTS-LLYSKNIIDQ--TFLTRRKLAWALASQWFGVYISPVDWSDF  366 (1180)
T ss_pred             ceeeeeecc-ccchHhhhhH--HHHHHHHHHHHHHHhhhEEEeeccchhhh
Confidence            767666655 7887665443  44455799999999999999999999983

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=98.10  E-value=3.7e-05  Score=58.09  Aligned_cols=100  Identities=14%  Similarity=0.055  Sum_probs=67.9

Q ss_pred             CeEEEEEecCCc-cchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEe-cCCCCcchhhhchhhhhccccccCCCCCCH
Q psy6925          23 GVLVRVYTPVGK-REQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAV-PDFSCGAMENWGLVTYREVCLLVDSQNTSA  100 (131)
Q Consensus        23 ~~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~-p~~~~~~me~~g~i~~~~~~~l~~~~~~~~  100 (131)
                      |.+.++-..... ..+.+...+.++++++.--+.|| +-||.+|.+++. .+-..||+|+-....+..+...    .++.
T Consensus       167 g~ph~~~~~g~~p~~d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~l~~~r~~----~~~~  241 (558)
T COG3975         167 GAPHTIALRGELPNFDKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTALIYDRFG----FTDQ  241 (558)
T ss_pred             CCceeEEEeeccccccHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceecccccccccccc----ccch
Confidence            344443333332 34566777889999999999999 899999988764 3446679998754444333211    1222


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCccCccc
Q psy6925         101 ITRQNIALVVGHELAHQWFGNLVTMEW  127 (131)
Q Consensus       101 ~~~~~~~~~iahEiaHqWfG~~vt~~~  127 (131)
                      ...+....+++||..|-|=+-.+.|+.
T Consensus       242 ~ky~~~l~llsHEyfH~WNvKrIrpa~  268 (558)
T COG3975         242 DKYQDLLGLLSHEYFHAWNVKRIRPAA  268 (558)
T ss_pred             hHHHHHHHHHHHHHHHhccceeccccc
Confidence            334666789999999999988887764

>PF13485 Peptidase_MA_2: Peptidase MA superfamily

Probab=96.63  E-value=0.0015  Score=40.22  Aligned_cols=21  Identities=52%  Similarity=0.930  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHhhcCccC
Q psy6925         104 QNIALVVGHELAHQWFGNLVT  124 (131)
Q Consensus       104 ~~~~~~iahEiaHqWfG~~vt  124 (131)
                      .....+++||++|+|+++.+.
T Consensus        23 ~~~~~~l~HE~~H~~~~~~~~   43 (128)
T PF13485_consen   23 DWLDRVLAHELAHQWFGNYFG   43 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC
Confidence            344579999999999998885

>PRK04860 hypothetical protein; Provisional

Probab=96.30  E-value=0.009  Score=39.10  Aligned_cols=72  Identities=19%  Similarity=0.199  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6925          41 ALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF  119 (131)
Q Consensus        41 ~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWf  119 (131)
                      +...+...+..-+++||.|++-++..+-.  ....+|+...     ....+-++|..-.......+..+|.||+||-|-
T Consensus         5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~--R~rtaG~~~l-----~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~   76 (160)
T PRK04860          5 VMRRLRECLAQANLYFKRTFPEPKVSYTQ--RGTSAGTAWL-----QSNEIRLNPVLLLENQQAFIDEVVPHELAHLLV   76 (160)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCEEEEee--cchhhcchhH-----hcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHH
Confidence            44556667777778888888776544322  1222444322     112122222221122345667899999999875

>smart00731 SprT SprT homologues

Probab=95.33  E-value=0.026  Score=36.32  Aligned_cols=17  Identities=24%  Similarity=0.243  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy6925         104 QNIALVVGHELAHQWFG  120 (131)
Q Consensus       104 ~~~~~~iahEiaHqWfG  120 (131)
                      ..+..+|.||++|.+..
T Consensus        57 ~~l~~~l~HEm~H~~~~   73 (146)
T smart00731       57 DRLRETLLHELCHAALY   73 (146)
T ss_pred             HHHHhhHHHHHHHHHHH
Confidence            45677999999999985

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori

Probab=94.94  E-value=0.09  Score=35.40  Aligned_cols=68  Identities=25%  Similarity=0.302  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6925          41 ALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF  119 (131)
Q Consensus        41 ~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWf  119 (131)
                      +...+...++.+++.+|.  +.+++.+=-.- ...|.-..-|.|.++-..+..++        .-+..+++||++|--.
T Consensus       110 ~~~~l~~~~~~~~~~~~~--~~~~i~ir~~k-srWGsc~~~~~I~ln~~L~~~P~--------~~idYVvvHEL~Hl~~  177 (205)
T PF01863_consen  110 AKEYLPERLKKYAKKLGL--PPPKIKIRDMK-SRWGSCSSKGNITLNWRLVMAPP--------EVIDYVVVHELCHLRH  177 (205)
T ss_pred             HHHHHHHHHHHHHHHcCC--CcceEEEeehh-hccccCCCCCcEEeecccccCCc--------cHHHHHHHHHHHHhcc
Confidence            345566777778888885  33443332222 23454455667777766554443        3456799999999743

The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.

>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised

Probab=94.23  E-value=0.025  Score=41.07  Aligned_cols=10  Identities=60%  Similarity=0.926  Sum_probs=9.3

Q ss_pred             HHHHHHHHHH
Q psy6925         108 LVVGHELAHQ  117 (131)
Q Consensus       108 ~~iahEiaHq  117 (131)
                      -+++||+|||
T Consensus       198 ~T~~HElAHq  207 (318)
T PF12725_consen  198 FTICHELAHQ  207 (318)
T ss_pred             HHHHHHHHHH
Confidence            5999999999

Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=94.19  E-value=0.056  Score=41.04  Aligned_cols=51  Identities=25%  Similarity=0.268  Sum_probs=32.8

Q ss_pred             CCCcccEEEecCCCCcchhhhc-hhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy6925          61 PLPKIDLVAVPDFSCGAMENWG-LVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQ  117 (131)
Q Consensus        61 P~~~~~~v~~p~~~~~~me~~g-~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHq  117 (131)
                      |-..++++.|.+-..++...+| .|.++...++..++      ...+..|||||++|-
T Consensus        90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae~------esElagViAHEigHv  141 (484)
T COG4783          90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAEN------ESELAGVIAHEIGHV  141 (484)
T ss_pred             CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcCC------HHHHHHHHHHHHHHH
Confidence            3445678888766677777765 44445444443322      245678999999994

>PRK03001 M48 family peptidase; Provisional

Probab=92.78  E-value=0.21  Score=35.65  Aligned_cols=63  Identities=19%  Similarity=0.202  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhh-----hchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy6925          44 VASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMEN-----WGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQ  117 (131)
Q Consensus        44 ~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~-----~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHq  117 (131)
                      .+.+.++-+.+..|.|.  +++  .++++...++...     .+.|.+.+. ++ +. .    +.+.+..++|||++|-
T Consensus        68 ~L~~~v~~la~~~g~~~--p~v--~v~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-l----~~~El~aVlAHElgHi  135 (283)
T PRK03001         68 QFYRMVRELAQRAGLPM--PKV--YLINEDQPNAFATGRNPEHAAVAATTG-IL-RV-L----SEREIRGVMAHELAHV  135 (283)
T ss_pred             HHHHHHHHHHHHcCCCC--CeE--EEecCCCcceEEecCCCCCeEEEecHH-HH-hh-C----CHHHHHHHHHHHHHHH
Confidence            45677788888888654  443  3334322222221     122333333 11 11 1    2356778999999994

>PRK03982 heat shock protein HtpX; Provisional

Probab=92.54  E-value=0.25  Score=35.37  Aligned_cols=64  Identities=23%  Similarity=0.308  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhh-----hchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy6925          44 VASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMEN-----WGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW  118 (131)
Q Consensus        44 ~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~-----~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqW  118 (131)
                      .+.+.++-+.+..|.|-  +++-  ++++...+++..     -+.+.+.+. ++ +. .    +.+.+..++|||++|-=
T Consensus        69 ~L~~~v~~la~~~g~~~--p~v~--v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~~-l----~~~El~AVlAHElgHi~  137 (288)
T PRK03982         69 ELYRIVERLAERANIPK--PKVA--IVPTQTPNAFATGRDPKHAVVAVTEG-IL-NL-L----NEDELEGVIAHELTHIK  137 (288)
T ss_pred             HHHHHHHHHHHHcCCCC--CeEE--EEeCCCcceEEeccCCCCeEEEeehH-HH-hh-C----CHHHHHHHHHHHHHHHH
Confidence            45677777778887553  4433  334322233322     223333333 21 11 1    23567789999999953

>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function

Probab=92.32  E-value=0.17  Score=30.56  Aligned_cols=30  Identities=17%  Similarity=0.261  Sum_probs=18.2

Q ss_pred             cccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCc
Q psy6925          89 VCLLVDSQNTSAITRQNIALVVGHELAHQWFGNL  122 (131)
Q Consensus        89 ~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~  122 (131)
                      ..++++++.+. .   +..-+++||++|.+++..
T Consensus        29 ~~I~in~~~~~-~---~~~f~laHELgH~~~~~~   58 (122)
T PF06114_consen   29 PIIFINSNLSP-E---RQRFTLAHELGHILLHHG   58 (122)
T ss_dssp             TEEEEESSS-H-H---HHHHHHHHHHHHHHHHH-
T ss_pred             CEEEECCCCCH-H---HHHHHHHHHHHHHHhhhc
Confidence            33555555322 2   223599999999998754

A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.

>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification

Probab=92.29  E-value=0.13  Score=34.87  Aligned_cols=71  Identities=18%  Similarity=0.278  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhhhc----hhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6925          44 VASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWG----LVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF  119 (131)
Q Consensus        44 ~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~~g----~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWf  119 (131)
                      .+.+.++-+.+..|.+.|-++  +.++++...++...++    .|.+... ++..      .....+..+++||++|---
T Consensus        32 ~L~~~v~~l~~~~~~~~~~~~--v~v~~~~~~NA~~~g~~~~~~I~v~~~-ll~~------~~~~el~aVlaHElgH~~~  102 (226)
T PF01435_consen   32 ELRRIVEELARRAGLGIPPPR--VYVIDSPSPNAFATGGGPRKRIVVTSG-LLES------LSEDELAAVLAHELGHIKH  102 (226)
T ss_dssp             HHHHHHHHHHHHHHCTSS--E--EEEE--SSEEEEEETTTC--EEEEEHH-HHHH------SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCCCCe--EEEEcCCCCcEEEEccCCCcEEEEeCh-hhhc------ccHHHHHHHHHHHHHHHHc
Confidence            344555555555554555544  4444432233332222    1333333 2211      1124567899999999876


Q ss_pred             cCcc
Q psy6925         120 GNLV  123 (131)
Q Consensus       120 G~~v  123 (131)
                      ++..
T Consensus       103 ~h~~  106 (226)
T PF01435_consen  103 RHIL  106 (226)
T ss_dssp             THCC
T ss_pred             CCcc
Confidence            6543

; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.

>PRK04351 hypothetical protein; Provisional

Probab=92.03  E-value=0.12  Score=33.50  Aligned_cols=16  Identities=25%  Similarity=0.432  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHh
Q psy6925         103 RQNIALVVGHELAHQW  118 (131)
Q Consensus       103 ~~~~~~~iahEiaHqW  118 (131)
                      ...+..+|.||++|-.
T Consensus        58 ~~~l~~vv~HElcH~~   73 (149)
T PRK04351         58 LEELIGIIKHELCHYH   73 (149)
T ss_pred             HHHHHhhHHHHHHHHH
Confidence            4667789999999954

>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site

Probab=91.35  E-value=0.88  Score=29.47  Aligned_cols=73  Identities=22%  Similarity=0.239  Sum_probs=37.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhccccCCCc--ccEEEecCCC---Ccchhhhchhhhhcccc-ccCCCCCCHHHHHHHHHHH
Q psy6925          37 QGQFALHVASKVLPFYKDYFNIAYPLPK--IDLVAVPDFS---CGAMENWGLVTYREVCL-LVDSQNTSAITRQNIALVV  110 (131)
Q Consensus        37 ~~~~~~~~~~~~l~~~~~~~g~~yP~~~--~~~v~~p~~~---~~~me~~g~i~~~~~~~-l~~~~~~~~~~~~~~~~~i  110 (131)
                      .+..+...+.++.++|.+.|| .=++..  ..++..-.++   ..+.-+-..+.|++..- ...+       ......++
T Consensus        68 ~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~g~~m~yGdG~~~~f~~-------~~~~lDVv  139 (150)
T PF01447_consen   68 AAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWNGSQMVYGDGDGQIFKP-------FASSLDVV  139 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE-SSSEEEE---SSSBS--------GGG-HHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCccccCCEEEEECCCCccccc-------Ccccccee
Confidence            345667788999999999999 777762  2333221111   12333333444443321 1111       11224699


Q ss_pred             HHHHHHH
Q psy6925         111 GHELAHQ  117 (131)
Q Consensus       111 ahEiaHq  117 (131)
                      |||++|-
T Consensus       140 aHEltHG  146 (150)
T PF01447_consen  140 AHELTHG  146 (150)
T ss_dssp             HHHHHHH
T ss_pred             eeccccc
Confidence            9999995

This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....

>PRK01345 heat shock protein HtpX; Provisional

Probab=91.28  E-value=0.4  Score=34.90  Aligned_cols=64  Identities=20%  Similarity=0.193  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhh-----hchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy6925          44 VASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMEN-----WGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW  118 (131)
Q Consensus        44 ~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~-----~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqW  118 (131)
                      .+.+.++-+.+..|.|  -+++-  ++++...++...     -+.|.+.+. ++ +. .    +.+.+..++|||++|.=
T Consensus        68 ~L~~~v~~La~~agi~--~p~v~--vid~~~~NAFa~G~~~~~~~V~vt~g-LL-~~-L----~~dEL~aVlAHElgHi~  136 (317)
T PRK01345         68 ELYRMVRDLARRAGLP--MPKVY--IIDNPQPNAFATGRNPENAAVAATTG-LL-QR-L----SPEEVAGVMAHELAHVK  136 (317)
T ss_pred             HHHHHHHHHHHHcCCC--CCcEE--EEcCCCcceEEecCCCCCeEEEechH-HH-hh-C----CHHHHHHHHHHHHHHHH
Confidence            3567778888888865  34543  344322222222     123433333 22 11 1    22567789999999963

>PF13699 DUF4157: Domain of unknown function (DUF4157)

Probab=91.22  E-value=0.18  Score=28.96  Aligned_cols=21  Identities=10%  Similarity=0.127  Sum_probs=14.0

Q ss_pred             HHHHHHHhhccccCCCcccEEEe
Q psy6925          48 VLPFYKDYFNIAYPLPKIDLVAV   70 (131)
Q Consensus        48 ~l~~~~~~~g~~yP~~~~~~v~~   70 (131)
                      +...+|..||.+  ++..++-.-
T Consensus         6 ~r~~~e~~~G~d--l~~Vrvh~~   26 (79)
T PF13699_consen    6 IRSRLERAFGAD--LSDVRVHTG   26 (79)
T ss_pred             HHHHHHHHhCCC--ccceEEEeC
Confidence            456788899844  676666543

>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily

Probab=91.16  E-value=1.5  Score=29.21  Aligned_cols=14  Identities=36%  Similarity=0.582  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHh
Q psy6925         105 NIALVVGHELAHQW  118 (131)
Q Consensus       105 ~~~~~iahEiaHqW  118 (131)
                      ....++|||++|+.
T Consensus       130 ~~a~~~AHElGH~l  143 (194)
T cd04269         130 LFAVTMAHELGHNL  143 (194)
T ss_pred             HHHHHHHHHHHhhc
Confidence            44579999999984

Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.

>COG1451 Predicted metal-dependent hydrolase [General function prediction only]

Probab=90.91  E-value=0.59  Score=32.31  Aligned_cols=71  Identities=20%  Similarity=0.183  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy6925          40 FALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF  119 (131)
Q Consensus        40 ~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWf  119 (131)
                      .+.+.....++.+.+.+|.++.--++.  .+ .-..|+-...|.+.++......+        ...+..+++||+||-=.
T Consensus       120 ~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~-k~~WGScs~~~~i~~~~~l~~~p--------~~~i~YVvvHELaHLke  188 (223)
T COG1451         120 ILREILEIRLKEYAKKLGVPPRAIKLK--NM-KRRWGSCSKAGEIRFNWRLVMAP--------EEVIDYVVVHELAHLKE  188 (223)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccceeee--ec-cceeeeecCCCcEEeehhhhcCC--------HHHHHHHHHHHHHHHhh
Confidence            344566777778888888665432222  11 22334444444444443322111        24556799999999755


Q ss_pred             cC
Q psy6925         120 GN  121 (131)
Q Consensus       120 G~  121 (131)
                      .|
T Consensus       189 ~n  190 (223)
T COG1451         189 KN  190 (223)
T ss_pred             hh
Confidence            54

>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs

Probab=90.60  E-value=1.2  Score=30.49  Aligned_cols=12  Identities=42%  Similarity=0.565  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHh
Q psy6925         107 ALVVGHELAHQW  118 (131)
Q Consensus       107 ~~~iahEiaHqW  118 (131)
                      ..++|||++|..
T Consensus       146 ~~~~AHElGH~l  157 (220)
T cd04272         146 VYTMTHELAHLL  157 (220)
T ss_pred             HHHHHHHHHHHh
Confidence            479999999974

Metalloproteases secreted by the salivary glands of arthropods.

>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function

Probab=90.52  E-value=1.7  Score=29.30  Aligned_cols=18  Identities=17%  Similarity=0.336  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHhhcC
Q psy6925         104 QNIALVVGHELAHQWFGN  121 (131)
Q Consensus       104 ~~~~~~iahEiaHqWfG~  121 (131)
                      ..+..++|||+-|.+--.
T Consensus        63 ~~l~~~iaHE~hH~~r~~   80 (195)
T PF10026_consen   63 EELPALIAHEYHHNCRYE   80 (195)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            467789999999996543

>PRK04897 heat shock protein HtpX; Provisional

Probab=90.37  E-value=0.5  Score=34.06  Aligned_cols=64  Identities=22%  Similarity=0.282  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHhhccccCCCcccEEEecCCCCcchh-----hhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy6925          44 VASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAME-----NWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW  118 (131)
Q Consensus        44 ~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me-----~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqW  118 (131)
                      ...+.++-+.+..|.|  -+++-++  ++...++..     .-+.+.+.+. ++ +     .-..+.+..++|||++|-=
T Consensus        81 ~L~~~v~~la~~~gip--~p~v~v~--~~~~~NAfa~G~~~~~~~v~vt~g-Ll-~-----~l~~~El~aVlAHElgHi~  149 (298)
T PRK04897         81 ELWHIVEDMAMVAQIP--MPRVFII--DDPSPNAFATGSSPKNAAVAVTTG-LL-A-----IMNREELEGVIGHEISHIR  149 (298)
T ss_pred             HHHHHHHHHHHHcCCC--CCcEEEe--cCCCCceEEeccCCCCcEEEeehH-HH-h-----hCCHHHHHHHHHHHHHHHh
Confidence            4667788888888754  4555443  322222221     1123333322 11 1     0113567789999999953

>PRK02391 heat shock protein HtpX; Provisional

Probab=90.30  E-value=0.51  Score=34.02  Aligned_cols=67  Identities=13%  Similarity=0.147  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHhhccccCCCcccEEEecCCCCcchh-----hhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy6925          44 VASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAME-----NWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW  118 (131)
Q Consensus        44 ~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me-----~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqW  118 (131)
                      ...+.++-+.+..|.|-  +++-++  ++...++..     .-+.+.+.+. ++ + ..    +...+..++|||++|--
T Consensus        77 ~L~~~v~~la~~~~~~~--p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~-~L----~~~El~aVlaHElgHi~  145 (296)
T PRK02391         77 ELHAMVERLCALADLPK--PRVAVA--DSDVPNAFATGRSPKNAVVCVTTG-LM-R-RL----DPDELEAVLAHELSHVK  145 (296)
T ss_pred             HHHHHHHHHHHHcCCCC--CcEEEE--eCCCCceEEecCCCCCcEEEecHH-HH-h-hC----CHHHHHHHHHHHHHHHH
Confidence            45667777778888553  454433  321111111     1123333332 22 1 11    13556789999999954


Q ss_pred             hcC
Q psy6925         119 FGN  121 (131)
Q Consensus       119 fG~  121 (131)
                      =++
T Consensus       146 ~~d  148 (296)
T PRK02391        146 NRD  148 (296)
T ss_pred             cCC
Confidence            433

>PHA02456 zinc metallopeptidase motif-containing protein

Probab=90.22  E-value=0.26  Score=30.20  Aligned_cols=15  Identities=33%  Similarity=0.616  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHhh
Q psy6925         105 NIALVVGHELAHQWF  119 (131)
Q Consensus       105 ~~~~~iahEiaHqWf  119 (131)
                      .+..+++||++|-|=
T Consensus        78 GC~~TL~HEL~H~WQ   92 (141)
T PHA02456         78 GCRDTLAHELNHAWQ   92 (141)
T ss_pred             chHHHHHHHHHHHHh
Confidence            345699999999994

>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1

Probab=89.71  E-value=2.9  Score=26.88  Aligned_cols=37  Identities=14%  Similarity=0.172  Sum_probs=25.2

Q ss_pred             eEEEEEecCCcc---chHHHHHHHHHHHHHHHHHhhcccc
Q psy6925          24 VLVRVYTPVGKR---EQGQFALHVASKVLPFYKDYFNIAY   60 (131)
Q Consensus        24 ~~i~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~y   60 (131)
                      .+|++|..+...   .......+.+.+++...++..++.+
T Consensus         2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~F   41 (156)
T cd04279           2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLKF   41 (156)
T ss_pred             CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeEE
Confidence            467777776532   2345567888999999988766443

A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=89.53  E-value=0.41  Score=30.82  Aligned_cols=18  Identities=22%  Similarity=0.170  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy6925         103 RQNIALVVGHELAHQWFG  120 (131)
Q Consensus       103 ~~~~~~~iahEiaHqWfG  120 (131)
                      ...+..+|.||++|.|..
T Consensus        57 ~~~~~~tL~HEm~H~~~~   74 (157)
T PF10263_consen   57 EEELIDTLLHEMAHAAAY   74 (157)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            456778999999999983

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site

Probab=88.91  E-value=1.2  Score=29.94  Aligned_cols=14  Identities=36%  Similarity=0.762  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHH
Q psy6925         104 QNIALVVGHELAHQ  117 (131)
Q Consensus       104 ~~~~~~iahEiaHq  117 (131)
                      .....++|||++|.
T Consensus       129 ~~~a~~~AHelGH~  142 (199)
T PF01421_consen  129 LSFAVIIAHELGHN  142 (199)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            34557999999995

; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....

>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A

Probab=88.80  E-value=0.33  Score=32.08  Aligned_cols=12  Identities=42%  Similarity=0.498  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHh
Q psy6925         107 ALVVGHELAHQW  118 (131)
Q Consensus       107 ~~~iahEiaHqW  118 (131)
                      ..++|||++||+
T Consensus       112 ~~~~aHElGH~l  123 (173)
T PF13574_consen  112 IDTFAHELGHQL  123 (173)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             eeeehhhhHhhc
Confidence            468999999995

...

>PRK01265 heat shock protein HtpX; Provisional

Probab=88.59  E-value=0.83  Score=33.40  Aligned_cols=63  Identities=24%  Similarity=0.251  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhh-----hchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy6925          44 VASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMEN-----WGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQ  117 (131)
Q Consensus        44 ~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~-----~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHq  117 (131)
                      ...+.++-+.+..|.|  -+++-++  ++...++..+     ...+.+.+. ++ +.     -..+.+..++|||++|-
T Consensus        84 ~L~~~v~~la~~~g~~--~p~vyv~--~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHi  151 (324)
T PRK01265         84 WLYSIVAEVAKYNGIR--VPKVYIA--DVPFPNAFAYGSPIAGKRIAITLP-LL-KI-----LNRDEIKAVAGHELGHL  151 (324)
T ss_pred             HHHHHHHHHHHHcCCC--CCeEEEe--cCCCCCeEEeccCCCCCEEEEehH-HH-hh-----CCHHHHHHHHHHHHHHH
Confidence            3566777777888754  4554433  3211111111     122333333 22 11     12356778999999994

>PRK05457 heat shock protein HtpX; Provisional

Probab=88.10  E-value=1  Score=32.28  Aligned_cols=68  Identities=24%  Similarity=0.391  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhhccccCCCcccEEEecCC---CCcchhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy6925          45 ASKVLPFYKDYFNIAYPLPKIDLVAVPDF---SCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGN  121 (131)
Q Consensus        45 ~~~~l~~~~~~~g~~yP~~~~~~v~~p~~---~~~~me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~  121 (131)
                      ..+.++-+.+..|.  |-+++.++-.+..   ..|.-...+.+.+.+. ++ +     .-+.+.+..++|||++|.==|+
T Consensus        79 L~~~v~~la~~~g~--p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~-----~L~~~El~aVlAHElgHi~~~d  149 (284)
T PRK05457         79 LVETVARQARQAGI--GMPEVAIYHSPEINAFATGASKNNSLVAVSTG-LL-Q-----NMSRDEVEAVLAHEISHIANGD  149 (284)
T ss_pred             HHHHHHHHHHhCCC--CCCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hh-h-----hCCHHHHHHHHHHHHHHHHcCC
Confidence            55677777888874  4565554432210   1111112223333332 11 1     1123567789999999975544

>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.62  E-value=5.8  Score=29.62  Aligned_cols=15  Identities=20%  Similarity=0.381  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHh
Q psy6925         104 QNIALVVGHELAHQW  118 (131)
Q Consensus       104 ~~~~~~iahEiaHqW  118 (131)
                      .....++|||+-|.=
T Consensus       137 ~~~~sTlAHEfQHmI  151 (366)
T PF10460_consen  137 DTVYSTLAHEFQHMI  151 (366)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            446789999999963

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.

>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase

Probab=86.42  E-value=0.61  Score=31.33  Aligned_cols=21  Identities=33%  Similarity=0.392  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcC
Q psy6925         101 ITRQNIALVVGHELAHQWFGN  121 (131)
Q Consensus       101 ~~~~~~~~~iahEiaHqWfG~  121 (131)
                      -....+..++.||+||.++|+
T Consensus        77 l~~~~i~~t~lHELaH~~~~~   97 (186)
T PF08325_consen   77 LPYETILGTMLHELAHNVHGP   97 (186)
T ss_pred             eeHHHHHHHHHHHHHhcccCC
Confidence            345677889999999999886

Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.

>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]

Probab=86.32  E-value=1.1  Score=28.94  Aligned_cols=14  Identities=57%  Similarity=0.662  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHH
Q psy6925         103 RQNIALVVGHELAH  116 (131)
Q Consensus       103 ~~~~~~~iahEiaH  116 (131)
                      ...+..+|.||+||
T Consensus        58 ~~f~~~vV~HELaH   71 (156)
T COG3091          58 EDFIEQVVPHELAH   71 (156)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34567899999987

>PRK02870 heat shock protein HtpX; Provisional

Probab=85.89  E-value=1.7  Score=32.01  Aligned_cols=64  Identities=20%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhh-----hchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy6925          44 VASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMEN-----WGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQ  117 (131)
Q Consensus        44 ~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~-----~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHq  117 (131)
                      .+.++++-+.+..|.|+ -+++.+  +++...++...     -+.|.+.+. ++ + ..    ..+.+..++|||++|-
T Consensus       116 ~L~~~ve~La~~ag~p~-~p~V~v--i~~~~~NAFA~G~~~~~~~Ivvt~G-LL-~-~L----~~dEL~aVlAHELgHi  184 (336)
T PRK02870        116 QLYNVVEELLVAAGLRF-MPKVYI--IDAPYMNAFASGYSEKSAMVAITTG-LL-E-KL----DRDELQAVMAHELSHI  184 (336)
T ss_pred             HHHHHHHHHHHHcCCCC-CCeEEE--EcCCCCceEEecCCCCCcEEEEehH-Hh-h-hC----CHHHHHHHHHHHHHHH
Confidence            34566677777777543 234333  34322222221     233443333 22 1 11    2356778999999995

>PRK03072 heat shock protein HtpX; Provisional

Probab=85.24  E-value=1.7  Score=31.20  Aligned_cols=63  Identities=19%  Similarity=0.299  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhh---h--chhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy6925          44 VASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMEN---W--GLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQ  117 (131)
Q Consensus        44 ~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~---~--g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHq  117 (131)
                      ...+.++-+.+..|.|  -+++-+  +++...++...   +  ..+...+. ++ +     ....+.+..++|||++|-
T Consensus        71 ~L~~~v~~la~~~g~p--~p~vyv--~~~~~~NAFa~G~~~~~~~v~vt~g-Ll-~-----~l~~~El~aVlAHElgHi  138 (288)
T PRK03072         71 AMYRIVRELSTAARQP--MPRLYI--SPTAAPNAFATGRNPRNAAVCCTEG-IL-Q-----ILNERELRGVLGHELSHV  138 (288)
T ss_pred             HHHHHHHHHHHHcCCC--CCCEEE--ecCCCCceEEecCCCCCcEEEecHH-HH-H-----hCCHHHHHHHHHHHHHHH
Confidence            4667888888888854  455433  33322222221   1  12222222 22 1     112356778999999994

>KOG2661|consensus

Probab=84.62  E-value=0.64  Score=34.08  Aligned_cols=18  Identities=39%  Similarity=0.582  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy6925         103 RQNIALVVGHELAHQWFG  120 (131)
Q Consensus       103 ~~~~~~~iahEiaHqWfG  120 (131)
                      ...++.+++||+|||=-+
T Consensus       272 ddglAtvLgHE~aHaVar  289 (424)
T KOG2661|consen  272 DDGLATVLGHEIAHAVAR  289 (424)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            356778999999999554

>KOG2719|consensus

Probab=84.45  E-value=1.5  Score=33.16  Aligned_cols=68  Identities=21%  Similarity=0.381  Sum_probs=34.2

Q ss_pred             HHHHHHHHHhhccccCCCcccEEEe--cCCCCc----chh-hhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy6925          46 SKVLPFYKDYFNIAYPLPKIDLVAV--PDFSCG----AME-NWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW  118 (131)
Q Consensus        46 ~~~l~~~~~~~g~~yP~~~~~~v~~--p~~~~~----~me-~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqW  118 (131)
                      +.-++.+.+-.|  +|.+++.++-.  ++...+    |.. +-.+++|+ + ++.++..   ...+.+..+++||++|-=
T Consensus       220 ~~~Ie~la~s~g--fp~~k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyD-t-Ll~~~~~---~~~eel~AVl~HELGHW~  292 (428)
T KOG2719|consen  220 KEKIERLADSVG--FPLSKYRVIDGSKRSSHSNAYFYGLCKNKRIVIYD-T-LLLEEEH---LNNEELVAVLAHELGHWK  292 (428)
T ss_pred             HHHHHHHHHhcC--CCceEEEEEecCCCCCCCCeeeeeccccceEEEeh-h-hhhhhhc---cccHHHHHHHHHHhhHHH
Confidence            455666666665  88888888764  211111    111 11122222 1 1110000   123567789999999954


Q ss_pred             hc
Q psy6925         119 FG  120 (131)
Q Consensus       119 fG  120 (131)
                      -|
T Consensus       293 ~~  294 (428)
T KOG2719|consen  293 LN  294 (428)
T ss_pred             Hh
Confidence            33

>KOG3607|consensus

Probab=83.32  E-value=5.5  Score=32.45  Aligned_cols=88  Identities=17%  Similarity=0.216  Sum_probs=41.6

Q ss_pred             EEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCC--CCcchhhhchhh---hhccccccCCCCCC
Q psy6925          25 LVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDF--SCGAMENWGLVT---YREVCLLVDSQNTS   99 (131)
Q Consensus        25 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~--~~~~me~~g~i~---~~~~~~l~~~~~~~   99 (131)
                      .+++|..++.....+.+.+.+...++|=..++...-|.+..-++..-.+  ...|+++.+-+-   ++.. +  ......
T Consensus       242 ~lE~Wt~~dki~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~g-v--~~~~~~  318 (716)
T KOG3607|consen  242 GLEIWTDGNKIDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGG-V--NKFHSD  318 (716)
T ss_pred             EEEecCCCCeecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccc-e--eecCcc
Confidence            3567777766554444545555555554554543335444333332111  122444444221   1111 1  111111


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy6925         100 AITRQNIALVVGHELAHQ  117 (131)
Q Consensus       100 ~~~~~~~~~~iahEiaHq  117 (131)
                        .....+.++||||+|.
T Consensus       319 --~~~~~a~v~AhelgH~  334 (716)
T KOG3607|consen  319 --ILLAFAVVLAHELGHN  334 (716)
T ss_pred             --cchhHHHHHHHHHHhh
Confidence              1244567999999995

>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B

Probab=81.44  E-value=1.3  Score=29.53  Aligned_cols=15  Identities=33%  Similarity=0.496  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHh
Q psy6925         104 QNIALVVGHELAHQW  118 (131)
Q Consensus       104 ~~~~~~iahEiaHqW  118 (131)
                      .....++||||+|.+
T Consensus       140 ~~~~~~~AHEiGH~l  154 (196)
T PF13688_consen  140 YNGAITFAHEIGHNL  154 (196)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             CceehhhHHhHHHhc
Confidence            334579999999984

...

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

Probab=80.71  E-value=1.2  Score=31.67  Aligned_cols=20  Identities=25%  Similarity=0.358  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHhhcCcc
Q psy6925         104 QNIALVVGHELAHQWFGNLV  123 (131)
Q Consensus       104 ~~~~~~iahEiaHqWfG~~v  123 (131)
                      +.+..+++||++|.=-++.+
T Consensus       155 dEl~aVlaHElgHi~~rd~~  174 (302)
T COG0501         155 DELEAVLAHELGHIKNRHTL  174 (302)
T ss_pred             HHHHHHHHHHHHHHhcccHH
Confidence            56778999999997655544

>COG4324 Predicted aminopeptidase [General function prediction only]

Probab=80.68  E-value=1.2  Score=31.74  Aligned_cols=17  Identities=41%  Similarity=0.386  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHhhc
Q psy6925         104 QNIALVVGHELAHQWFG  120 (131)
Q Consensus       104 ~~~~~~iahEiaHqWfG  120 (131)
                      ..+..+|-||+|||=+.
T Consensus       195 ~~lA~LIFHELAHQk~Y  211 (376)
T COG4324         195 TYLASLIFHELAHQKIY  211 (376)
T ss_pred             HHHHHHHHHHHhhheEe
Confidence            46678999999999653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	131
3mdj_A	921	Er Aminopeptidase, Erap1, Bound To The Zinc Aminope		7e-41
3qnf_A	954	Crystal Structure Of The Open State Of Human Endopl		1e-40
2yd0_A	897	Crystal Structure Of The Soluble Domain Of Human En		1e-40
3se6_A	967	Crystal Structure Of The Human Endoplasmic Reticulu		9e-39
4e36_A	967	Crystal Structure Of The Human Endoplasmic Reticulu		9e-39
4f5c_A	959	Crystal Structure Of The Spike Receptor Binding Dom		5e-38
4h5h_A	908	Crystal Structure Of Porcine Aminopeptidase-N Compl		5e-38
4fke_A	909	Crystal Structure Of Porcine Aminopeptidase-N Lengt		5e-38
4fyq_A	903	Human Aminopeptidase N (Cd13) Length = 903		8e-38
4hol_A	908	Crystal Structure Of Porcine Aminopeptidase-N Compl		1e-37
3q7j_A	780	Engineered Thermoplasma Acidophilum F3 Factor Mimic		3e-30
1z1w_A	780	Crystal Structures Of The Tricorn Interacting Facor		6e-30
3t8v_A	895	A Bestatin-Based Chemical Biology Strategy Reveals		1e-17
3ebi_A	890	Structure Of The M1 Alanylaminopeptidase From Malar		1e-17
3ebg_A	889	Structure Of The M1 Alanylaminopeptidase From Malar		1e-17
3q43_A	891	X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin		1e-17
2gtq_A	867	Crystal Structure Of Aminopeptidase N From Human Pa		5e-13
2hpo_A	891	Structure Of Aminopeptidase N From E. Coli Suggests		1e-11
3puu_A	891	Crystal Structure Of Glu121gln Mutant Of E. Coli Am		1e-11
2dq6_A	870	Crystal Structure Of Aminopeptidase N From Escheric		2e-11
3u9w_A	608	Structure Of Human Leukotriene A4 Hydrolase In Comp		1e-05
1sqm_A	610	Structure Of [r563a] Leukotriene A4 Hydrolase Lengt		1e-05
1gw6_A	610	Structure Of Leukotriene A4 Hydrolase D375n Mutant		1e-05
2r59_A	616	Leukotriene A4 Hydrolase Complexed With Inhibitor R		1e-05
3cho_A	610	Crystal Structure Of Leukotriene A4 Hydrolase In Co		1e-05
1hs6_A	611	Structure Of Leukotriene A4 Hydrolase Complexed Wit		1e-05
3cia_A	605	Crystal Structure Of Cold-Aminopeptidase From Colwe		3e-05
3b7s_A	616	[e296q]lta4h In Complex With Rsr Substrate Length =		4e-05
1h19_A	611	Structure Of [e271q] Leukotriene A4 Hydrolase Lengt		4e-05

>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase Inhibitor, Bestatin Length = 921

Iteration: 1
 Score =  162 bits (409), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 74/131 (56%), Positives = 92/131 (70%)
Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA ++ +F+ V + +  GV V VY    K  Q  +AL  A  +L FY+DYF+I Y
Sbjct: 206 MSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPY 265
Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPK DL A+PDF  GAMENWGL TYRE  LL D++ +SA ++ +I + V HELAHQWFG
Sbjct: 266 PLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLDITMTVAHELAHQWFG 325
Query: 121 NLVTMEWWTHL 131
           NLVTMEWW  L
Sbjct: 326 NLVTMEWWNDL 336

>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 954

Iteration: 1
 Score =  160 bits (406), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 74/131 (56%), Positives = 91/131 (69%)
Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA ++ +F+ V + +  GV V VY    K  Q  +AL  A  +L FY+DYF+I Y
Sbjct: 248 MSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPY 307
Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPK DL A+PDF  GAMENWGL TYRE  LL D++ +SA ++  I + V HELAHQWFG
Sbjct: 308 PLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFG 367
Query: 121 NLVTMEWWTHL 131
           NLVTMEWW  L
Sbjct: 368 NLVTMEWWNDL 378

>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 897

Iteration: 1
 Score =  160 bits (406), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 74/131 (56%), Positives = 91/131 (69%)
Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA ++ +F+ V + +  GV V VY    K  Q  +AL  A  +L FY+DYF+I Y
Sbjct: 197 MSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPY 256
Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PLPK DL A+PDF  GAMENWGL TYRE  LL D++ +SA ++  I + V HELAHQWFG
Sbjct: 257 PLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFG 316
Query: 121 NLVTMEWWTHL 131
           NLVTMEWW  L
Sbjct: 317 NLVTMEWWNDL 327

>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Length = 967

Iteration: 1
 Score =  154 bits (390), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 92/131 (70%)
Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA +V +F  +   +S GV V +Y    KR Q  +AL  + K+L FY+ YF+I Y
Sbjct: 259 MSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYY 318
Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PL K+DL+A+PDF+ GAMENWGL+TYRE  LL D + +SA  +  +  V+ HELAHQWFG
Sbjct: 319 PLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFG 378
Query: 121 NLVTMEWWTHL 131
           NLVTMEWW  +
Sbjct: 379 NLVTMEWWNDI 389

>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Variant N392k Length = 967

Iteration: 1
 Score =  154 bits (390), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 92/131 (70%)
Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA +V +F  +   +S GV V +Y    KR Q  +AL  + K+L FY+ YF+I Y
Sbjct: 259 MSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYY 318
Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PL K+DL+A+PDF+ GAMENWGL+TYRE  LL D + +SA  +  +  V+ HELAHQWFG
Sbjct: 319 PLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFG 378
Query: 121 NLVTMEWWTHL 131
           NLVTMEWW  +
Sbjct: 379 NLVTMEWWNDI 389

>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of A Porcine Respiratory Coronavirus In Complex With The Pig Aminopeptidase N Ectodomain Length = 959

Iteration: 1
 Score =  152 bits (384), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 95/133 (71%), Gaps = 2/133 (1%)
Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYT-PVGKRE-QGQFALHVASKVLPFYKDYFNI 58
           MSTYL+A +V EF  V ET+ +GVL+R++  P    E  G +AL+V   +L F+ +++N 
Sbjct: 252 MSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNT 311
Query: 59  AYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW 118
           +YPLPK D +A+PDF+ GAMENWGLVTYRE  LL D Q++S   ++ +  V+ HELAHQW
Sbjct: 312 SYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQW 371
Query: 119 FGNLVTMEWWTHL 131
           FGNLVT+ WW  L
Sbjct: 372 FGNLVTLAWWNDL 384

>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Cleaved Poly-Alanine Length = 908

Iteration: 1
 Score =  152 bits (384), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 95/133 (71%), Gaps = 2/133 (1%)
Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYT-PVGKRE-QGQFALHVASKVLPFYKDYFNI 58
           MSTYL+A +V EF  V ET+ +GVL+R++  P    E  G +AL+V   +L F+ +++N 
Sbjct: 208 MSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNT 267
Query: 59  AYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW 118
           +YPLPK D +A+PDF+ GAMENWGLVTYRE  LL D Q++S   ++ +  V+ HELAHQW
Sbjct: 268 SYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQW 327
Query: 119 FGNLVTMEWWTHL 131
           FGNLVT+ WW  L
Sbjct: 328 FGNLVTLAWWNDL 340

>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Length = 909

Iteration: 1
 Score =  152 bits (384), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 95/133 (71%), Gaps = 2/133 (1%)
Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYT-PVGKRE-QGQFALHVASKVLPFYKDYFNI 58
           MSTYL+A +V EF  V ET+ +GVL+R++  P    E  G +AL+V   +L F+ +++N 
Sbjct: 209 MSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNT 268
Query: 59  AYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW 118
           +YPLPK D +A+PDF+ GAMENWGLVTYRE  LL D Q++S   ++ +  V+ HELAHQW
Sbjct: 269 SYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQW 328
Query: 119 FGNLVTMEWWTHL 131
           FGNLVT+ WW  L
Sbjct: 329 FGNLVTLAWWNDL 341

>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13) Length = 903

Iteration: 1
 Score =  151 bits (382), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 68/133 (51%), Positives = 94/133 (70%), Gaps = 2/133 (1%)
Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGK--REQGQFALHVASKVLPFYKDYFNI 58
           MSTYL+A +V EFDYVE+ +S+GVL+R++          G +AL+V   +L F+  +++ 
Sbjct: 211 MSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDT 270
Query: 59  AYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW 118
            YPLPK D + +PDF+ GAMENWGLVTYRE  LL D  ++S+  ++ +  V+ HELAHQW
Sbjct: 271 PYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQW 330
Query: 119 FGNLVTMEWWTHL 131
           FGNLVT+EWW  L
Sbjct: 331 FGNLVTIEWWNDL 343

>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Poly- Alanine Length = 908

Iteration: 1
 Score =  151 bits (381), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 95/133 (71%), Gaps = 2/133 (1%)
Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYT-PVGKRE-QGQFALHVASKVLPFYKDYFNI 58
           MSTYL+A +V EF  V ET+ +GVL+R++  P    E  G +AL+V   +L F+ +++N 
Sbjct: 208 MSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNT 267
Query: 59  AYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW 118
           +YPLPK D +A+PDF+ GAMENWGLVTYRE  LL D Q++S   ++ +  V+ H+LAHQW
Sbjct: 268 SYPLPKSDQIALPDFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHQLAHQW 327
Query: 119 FGNLVTMEWWTHL 131
           FGNLVT+ WW  L
Sbjct: 328 FGNLVTLAWWNDL 340

>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human Aminopeptidase N (Apn) As A Target For Anticancer Drug Development Length = 780

Iteration: 1
 Score =  126 bits (316), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/131 (44%), Positives = 88/131 (67%), Gaps = 4/131 (3%)
Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYL+ V +G+F Y  E   D  L+       K  + ++ L +A K + FY++YF I Y
Sbjct: 158 MSTYLLYVGIGKFRYEYEKYRDIDLILASL---KDIRSKYPLDMARKSVEFYENYFGIPY 214
Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
            LPK+ L++VP+F  GAMENWG +T+RE+ + + ++N++   ++N A V+ HE+AHQWFG
Sbjct: 215 ALPKMHLISVPEFGAGAMENWGAITFREIYMDI-AENSAVTVKRNSATVIAHEIAHQWFG 273
Query: 121 NLVTMEWWTHL 131
           +LVTM+WW  L
Sbjct: 274 DLVTMKWWNDL 284

>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3 From Thermoplasma Acidophilum, A Zinc Aminopeptidase In Three Different Conformations Length = 780

Iteration: 1
 Score =  125 bits (314), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/131 (44%), Positives = 88/131 (67%), Gaps = 4/131 (3%)
Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYL+ V +G+F Y  E   D  L+       K  + ++ L +A K + FY++YF I Y
Sbjct: 158 MSTYLLYVGIGKFRYEYEKYRDIDLILASL---KDIRSKYPLDMARKSVEFYENYFGIPY 214
Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
            LPK+ L++VP+F  GAMENWG +T+RE+ + + ++N++   ++N A V+ HE+AHQWFG
Sbjct: 215 ALPKMHLISVPEFGAGAMENWGAITFREIYMDI-AENSAVTVKRNSANVIAHEIAHQWFG 273
Query: 121 NLVTMEWWTHL 131
           +LVTM+WW  L
Sbjct: 274 DLVTMKWWNDL 284

>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- And M17-Family Aminopeptidases Length = 895

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 4   YLVAVVVGEFD-----YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNI 58
           YL AVV G+       Y+ + +   V + V++      + Q+AL    K + F +DYF +
Sbjct: 188 YLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGL 247
Query: 59  AYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW 118
            Y L +++LVAV DF+ GAMEN GL  +    LL   +N+   +   I  VVGHE  HQ+
Sbjct: 248 EYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQY 307
Query: 119 FGNLVTMEWWTHL 131
            GN VT+  W  L
Sbjct: 308 TGNRVTLRDWFQL 320

>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria Complexed With The Phosphinate Dipeptide Analog Length = 890

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 4   YLVAVVVGEFD-----YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNI 58
           YL AVV G+       Y+ + +   V + V++      + Q+AL    K + F +DYF +
Sbjct: 189 YLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGL 248
Query: 59  AYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW 118
            Y L +++LVAV DF+ GAMEN GL  +    LL   +N+   +   I  VVGHE  HQ+
Sbjct: 249 EYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQY 308
Query: 119 FGNLVTMEWWTHL 131
            GN VT+  W  L
Sbjct: 309 TGNRVTLRDWFQL 321

>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria Length = 889

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 4   YLVAVVVGEFD-----YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNI 58
           YL AVV G+       Y+ + +   V + V++      + Q+AL    K + F +DYF +
Sbjct: 188 YLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGL 247
Query: 59  AYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW 118
            Y L +++LVAV DF+ GAMEN GL  +    LL   +N+   +   I  VVGHE  HQ+
Sbjct: 248 EYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQY 307
Query: 119 FGNLVTMEWWTHL 131
            GN VT+  W  L
Sbjct: 308 TGNRVTLRDWFQL 320

>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin Derivative 15 Length = 891

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 4   YLVAVVVGEFD-----YVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNI 58
           YL AVV G+       Y+ + +   V + V++      + Q+AL    K + F +DYF +
Sbjct: 189 YLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGL 248
Query: 59  AYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW 118
            Y L +++LVAV DF+ GAMEN GL  +    LL   +N+   +   I  VVGHE  HQ+
Sbjct: 249 EYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQY 308
Query: 119 FGNLVTMEWWTHL 131
            GN VT+  W  L
Sbjct: 309 TGNRVTLRDWFQL 321

>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen Neisseria Meningitidis Length = 867

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 3   TYLVAVVVGEF----DYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNI 58
           +YL A+V G+     DY    S   V +  YT    + +  FA+        + +  F +
Sbjct: 180 SYLFALVAGDLAVTEDYFTTXSGRNVKIEFYTTEADKPKVGFAVESLKNAXKWDETRFGL 239
Query: 59  AYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW 118
            Y L    +VAV DF+ GA EN GL  +    +L DS+  +    + I  VVGHE  H W
Sbjct: 240 EYDLDIFXVVAVGDFNXGAXENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNW 299
Query: 119 FGNLVTMEWWTHL 131
            GN VT   W  L
Sbjct: 300 TGNRVTCRDWFQL 312

>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A Compartmentalized, Gated Active Site Length = 891

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 4   YLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIA 59
           YL A+V G+FD + +T    S   V + +Y   G  ++  +A+      + + ++ F + 
Sbjct: 206 YLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLE 265
Query: 60  YPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
           Y L    +VAV  F+ GAMEN GL  +    +L  +   +     +I  V+GHE  H W 
Sbjct: 266 YDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWT 325
Query: 120 GNLVTMEWWTHL 131
           GN VT   W  L
Sbjct: 326 GNRVTCRDWFQL 337

>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli Aminopeptidase N Length = 891

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 4   YLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIA 59
           YL A+V G+FD + +T    S   V + +Y   G  ++  +A+      + + ++ F + 
Sbjct: 206 YLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLE 265
Query: 60  YPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
           Y L    +VAV  F+ GAMEN GL  +    +L  +   +     +I  V+GHE  H W 
Sbjct: 266 YDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWT 325
Query: 120 GNLVTMEWWTHL 131
           GN VT   W  L
Sbjct: 326 GNRVTCRDWFQL 337

>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia Coli Length = 870

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 4   YLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIA 59
           YL A+V G+FD + +T    S   V + +Y   G  ++  +A+      + + ++ F + 
Sbjct: 185 YLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLE 244
Query: 60  YPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
           Y L    +VAV  F+ GAMEN GL  +    +L  +   +     +I  V+GHE  H W 
Sbjct: 245 YDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWT 304
Query: 120 GNLVTMEWWTHL 131
           GN VT   W  L
Sbjct: 305 GNRVTCRDWFQL 316

>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex With Inhibitor Sc57461a Length = 608

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 4   YLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLP 63
           YL+A+VVG      E+   G    V++   + E+  +       +L   +D     Y   
Sbjct: 198 YLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWG 252
Query: 64  KIDLVAVP-DFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNL 122
           + DL+ +P  F  G MEN  L       L  D         ++++ V+ HE++H W GNL
Sbjct: 253 QYDLLVLPPSFPYGGMENPCLTFVTPTLLAGD---------KSLSNVIAHEISHSWTGNL 303
Query: 123 VTMEWWTHL 131
           VT + W H 
Sbjct: 304 VTNKTWDHF 312

>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase Length = 610

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 4   YLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLP 63
           YL+A+VVG      E+   G    V++   + E+  +       +L   +D     Y   
Sbjct: 200 YLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWG 254
Query: 64  KIDLVAVP-DFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNL 122
           + DL+ +P  F  G MEN  L       L  D         ++++ V+ HE++H W GNL
Sbjct: 255 QYDLLVLPPSFPYGGMENPCLTFVTPTLLAGD---------KSLSNVIAHEISHSWTGNL 305
Query: 123 VTMEWWTHL 131
           VT + W H 
Sbjct: 306 VTNKTWDHF 314

>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant Length = 610

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 4   YLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLP 63
           YL+A+VVG      E+   G    V++   + E+  +       +L   +D     Y   
Sbjct: 200 YLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWG 254
Query: 64  KIDLVAVP-DFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNL 122
           + DL+ +P  F  G MEN  L       L  D         ++++ V+ HE++H W GNL
Sbjct: 255 QYDLLVLPPSFPYGGMENPCLTFVTPTLLAGD---------KSLSNVIAHEISHSWTGNL 305
Query: 123 VTMEWWTHL 131
           VT + W H 
Sbjct: 306 VTNKTWDHF 314

>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041 Length = 616

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 4   YLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLP 63
           YL+A+VVG      E+   G    V++   + E+  +       +L   +D     Y   
Sbjct: 206 YLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWG 260
Query: 64  KIDLVAVP-DFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNL 122
           + DL+ +P  F  G MEN  L       L  D         ++++ V+ HE++H W GNL
Sbjct: 261 QYDLLVLPPSFPYGGMENPCLTFVTPTLLAGD---------KSLSNVIAHEISHSWTGNL 311
Query: 123 VTMEWWTHL 131
           VT + W H 
Sbjct: 312 VTNKTWDHF 320

>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide Length = 610

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 4   YLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLP 63
           YL+A+VVG      E+   G    V++   + E+  +       +L   +D     Y   
Sbjct: 200 YLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWG 254
Query: 64  KIDLVAVP-DFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNL 122
           + DL+ +P  F  G MEN  L       L  D         ++++ V+ HE++H W GNL
Sbjct: 255 QYDLLVLPPSFPYGGMENPCLTFVTPTLLAGD---------KSLSNVIAHEISHSWTGNL 305
Query: 123 VTMEWWTHL 131
           VT + W H 
Sbjct: 306 VTNKTWDHF 314

>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With Bestatin. Length = 611

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 4   YLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLP 63
           YL+A+VVG      E+   G    V++   + E+  +       +L   +D     Y   
Sbjct: 201 YLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWG 255
Query: 64  KIDLVAVP-DFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNL 122
           + DL+ +P  F  G MEN  L       L  D         ++++ V+ HE++H W GNL
Sbjct: 256 QYDLLVLPPSFPYGGMENPCLTFVTPTLLAGD---------KSLSNVIAHEISHSWTGNL 306
Query: 123 VTMEWWTHL 131
           VT + W H 
Sbjct: 307 VTNKTWDHF 315

>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia Psychrerythraea Length = 605

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 4   YLVAVVVGEFDYVEETSSDGVLVRVY---TPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           YL+A+ VG+ ++   +   G+    Y     V + +  Q  +  A ++   Y  Y    Y
Sbjct: 205 YLIAIGVGDLEFKAMSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQM---YGKYRWGRY 261
Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
            L    L+  P F  G MEN  L       +  D         +++  ++ HELAH W G
Sbjct: 262 DL----LMLPPSFPFGGMENPRLSFITPTVVAGD---------KSLVNLIAHELAHSWSG 308
Query: 121 NLVTMEWWTHL 131
           NLVT E W  L
Sbjct: 309 NLVTNESWRDL 319

>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate Length = 616

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 4   YLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLP 63
           YL+A+VVG      E+   G    V++   + E+  +       +L   +D     Y   
Sbjct: 206 YLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWG 260
Query: 64  KIDLVAVP-DFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNL 122
           + DL+ +P  F  G MEN  L       L  D         ++++ V+ H+++H W GNL
Sbjct: 261 QYDLLVLPPSFPYGGMENPCLTFVTPTLLAGD---------KSLSNVIAHQISHSWTGNL 311
Query: 123 VTMEWWTHL 131
           VT + W H 
Sbjct: 312 VTNKTWDHF 320

>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase Length = 611

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 4   YLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLP 63
           YL+A+VVG      E+   G    V++   + E+  +       +L   +D     Y   
Sbjct: 201 YLIALVVGAL----ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAED-LGGPYVWG 255
Query: 64  KIDLVAVP-DFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNL 122
           + DL+ +P  F  G M+N  L       L  D         ++++ V+ HE++H W GNL
Sbjct: 256 QYDLLVLPPSFPYGGMQNPCLTFVTPTLLAGD---------KSLSNVIAHEISHSWTGNL 306
Query: 123 VTMEWWTHL 131
           VT + W H 
Sbjct: 307 VTNKTWDHF 315

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
2xdt_A	897	Endoplasmic reticulum aminopeptidase 1; glycoprote	5e-80
3se6_A	967	Endoplasmic reticulum aminopeptidase 2; thermolysi	2e-79
1z5h_A	780	Tricorn protease interacting factor F3; zinc amino	6e-76
3ebh_A	889	PFA-M1, M1 family aminopeptidase; hydrolase, metal	6e-60
2xq0_A	632	LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B	1e-59
3b7s_A	616	Leukotriene A-4 hydrolase; transition state, analo	2e-56
3cia_A	605	Cold-active aminopeptidase; psychrohilic, hydrolas	1e-53
2gtq_A	867	Aminopeptidase N; alanine aminopeptidase, M1 famil	1e-53
3b34_A	891	Aminopeptidase N; protease, hydrolase, thermolysin	5e-52

>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} Length = 967

 Score =  250 bits (641), Expect = 2e-79
 Identities = 71/131 (54%), Positives = 92/131 (70%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYLVA +V +F  +   +S GV V +Y    KR Q  +AL  + K+L FY+ YF+I Y
Sbjct: 259 MSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYY 318

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
           PL K+DL+A+PDF+ GAMENWGL+TYRE  LL D + +SA  +  +  V+ HELAHQWFG
Sbjct: 319 PLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFG 378

Query: 121 NLVTMEWWTHL 131
           NLVTMEWW  +
Sbjct: 379 NLVTMEWWNDI 389

>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Length = 780

 Score =  238 bits (609), Expect = 6e-76
 Identities = 57/131 (43%), Positives = 87/131 (66%), Gaps = 4/131 (3%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           MSTYL+ V +G+F Y  E   D   + +     K  + ++ L +A K + FY++YF I Y
Sbjct: 158 MSTYLLYVGIGKFRYEYEKYRD---IDLILASLKDIRSKYPLDMARKSVEFYENYFGIPY 214

Query: 61  PLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFG 120
            LPK+ L++VP+F  GAMENWG +T+RE+ + +  +N++   ++N A V+ HE+AHQWFG
Sbjct: 215 ALPKMHLISVPEFGAGAMENWGAITFREIYMDIA-ENSAVTVKRNSANVIAHEIAHQWFG 273

Query: 121 NLVTMEWWTHL 131
           +LVTM+WW  L
Sbjct: 274 DLVTMKWWNDL 284

>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Length = 889

 Score =  196 bits (500), Expect = 6e-60
 Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 5/136 (3%)

Query: 1   MSTYLVAVVVGEFDYVEET-----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDY 55
              YL AVV G+  ++  T     +   V + V++      + Q+AL    K + F +DY
Sbjct: 185 KPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDY 244

Query: 56  FNIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELA 115
           F + Y L +++LVAV DF+ GAMEN GL  +    LL   +N+   +   I  VVGHE  
Sbjct: 245 FGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYF 304

Query: 116 HQWFGNLVTMEWWTHL 131
           HQ+ GN VT+  W  L
Sbjct: 305 HQYTGNRVTLRDWFQL 320

>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632

 Score =  192 bits (490), Expect = 1e-59
 Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 14/132 (10%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           +  YL+ +  G+          G    VYT   + +  Q+      +      +     Y
Sbjct: 202 IPAYLIGIASGDLSSAP----IGPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIFEY 257

Query: 61  PLPKID-LVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
                D LV V  +  G ME+  +       L  D  N           V+ HELAH W 
Sbjct: 258 EWGTYDILVNVDSYPYGGMESPNMTFATPTLLAHDRSNID---------VIAHELAHSWS 308

Query: 120 GNLVTMEWWTHL 131
           GNLVT   W H 
Sbjct: 309 GNLVTNCSWNHF 320

>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide, hydrolysis, hydrolase, leukotriene biosynthesis, metal-binding, metalloprotease; 1.47A {Homo sapiens} SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L* 2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ... Length = 616

 Score =  184 bits (468), Expect = 2e-56
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           +  YL+A+VVG  +  +     G    V++   + E+  +       +L   +D     Y
Sbjct: 203 IPCYLIALVVGALESRQ----IGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG-GPY 257

Query: 61  PLPKIDLVAVP-DFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
              + DL+ +P  F  G MEN  L       L  D         ++++ V+ H+++H W 
Sbjct: 258 VWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGD---------KSLSNVIAHQISHSWT 308

Query: 120 GNLVTMEWWTHL 131
           GNLVT + W H 
Sbjct: 309 GNLVTNKTWDHF 320

>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Length = 605

 Score =  176 bits (448), Expect = 1e-53
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 15/132 (11%)

Query: 1   MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAY 60
           +  YL+A+ VG+ ++            +Y      +           ++   +  +   Y
Sbjct: 202 IPPYLIAIGVGDLEFKA----MSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMY-GKY 256

Query: 61  PLPKIDLVAVP-DFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWF 119
              + DL+ +P  F  G MEN  L       +  D         +++  ++ HELAH W 
Sbjct: 257 RWGRYDLLMLPPSFPFGGMENPRLSFITPTVVAGD---------KSLVNLIAHELAHSWS 307

Query: 120 GNLVTMEWWTHL 131
           GNLVT E W  L
Sbjct: 308 GNLVTNESWRDL 319

>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Length = 867

 Score =  178 bits (454), Expect = 1e-53
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 4/135 (2%)

Query: 1   MSTYLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF 56
             +YL A+V G+    E+     S   V +  YT    + +  FA+      + + +  F
Sbjct: 178 KPSYLFALVAGDLAVTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRF 237

Query: 57  NIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAH 116
            + Y L    +VAV DF+ GAMEN GL  +    +L DS+  +    + I  VVGHE  H
Sbjct: 238 GLEYDLDIFMVVAVGDFNMGAMENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFH 297

Query: 117 QWFGNLVTMEWWTHL 131
            W GN VT   W  L
Sbjct: 298 NWTGNRVTCRDWFQL 312

>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Length = 891

 Score =  174 bits (443), Expect = 5e-52
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 4/135 (2%)

Query: 1   MSTYLVAVVVGEFDYVEET----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYF 56
              YL A+V G+FD + +T    S   V + +Y   G  ++  +A+      + + ++ F
Sbjct: 203 KPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERF 262

Query: 57  NIAYPLPKIDLVAVPDFSCGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAH 116
            + Y L    +VAV  F+ GAMEN GL  +    +L  +   +     +I  V+GHE  H
Sbjct: 263 GLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFH 322

Query: 117 QWFGNLVTMEWWTHL 131
            W GN VT   W  L
Sbjct: 323 NWTGNRVTCRDWFQL 337

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
3se6_A	967	Endoplasmic reticulum aminopeptidase 2; thermolysi	100.0
2xdt_A	897	Endoplasmic reticulum aminopeptidase 1; glycoprote	100.0
3ebh_A	889	PFA-M1, M1 family aminopeptidase; hydrolase, metal	100.0
4fke_A	909	Aminopeptidase N; zinc aminopeptidase, hydrolase;	100.0
3b34_A	891	Aminopeptidase N; protease, hydrolase, thermolysin	100.0
1z5h_A	780	Tricorn protease interacting factor F3; zinc amino	100.0
2gtq_A	867	Aminopeptidase N; alanine aminopeptidase, M1 famil	100.0
3u9w_A	608	Leukotriene A-4 hydrolase; hydrolase-hydrolase inh	100.0
3cia_A	605	Cold-active aminopeptidase; psychrohilic, hydrolas	99.97
2xq0_A	632	LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B	99.97
4fgm_A	597	Aminopeptidase N family protein; structural genomi	99.81
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	94.84
1r55_A	214	ADAM 33; metalloprotease, inhibitor, asthma, hydro	91.36
1yp1_A	202	FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}	89.76
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	89.1
1bud_A	197	Protein (acutolysin A); metalloproteinase, snake v	89.04
2w15_A	202	Zinc metalloproteinase BAP1; hydrolase inhibitor c	88.37
1atl_A	202	Atrolysin C; metalloendopeptidase, hydrolase-hydro	88.28
1qua_A	197	Acutolysin-C, hemorrhagin III; metalloprotease, he	88.2
2ejq_A	130	Hypothetical protein TTHA0227; NPPSFA, national pr	87.9
2ero_A	427	VAP-1, vascular apoptosis-inducing protein 1; meta	87.79
1kuf_A	203	Atrolysin E, metalloproteinase; alpha/beta protein	86.8
2e3x_A	427	Coagulation factor X-activating enzyme light CHAI;	85.11
2dw0_A	419	Catrocollastatin; apoptotic toxin, SVMP, metallopr	84.29
3k7l_A	422	Atragin; SVMP, metalloprotease, hydrolase; HET: NA	83.22
3nqx_A	306	MCP-02, secreted metalloprotease MCP02; zinc metal	82.82
1u4g_A	301	Elastase, pseudolysin; , inhibition, peptidase fam	82.51
4ger_A	304	Gentlyase metalloprotease; metalloproteinase, tiss	81.44
3k7n_A	397	K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {	81.2
4dd8_A	208	Disintegrin and metalloproteinase domain-containi	80.47

>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*

Probab=100.00  E-value=7e-40  Score=259.55  Aligned_cols=131  Identities=54%  Similarity=0.989  Sum_probs=124.7

Q ss_pred             CCceeeeeEEecceEeeeeecCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhh
Q psy6925           1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMEN   80 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~   80 (131)
                      ||+|++||+||+|+.++..+.+|+++++|++|+..+.++++++.+++++++|+++||+|||++|+++|++|++..||||+
T Consensus       259 mstYLva~~vg~f~~~~~~~~~gv~v~v~~~p~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vPdf~~GaMEn  338 (967)
T 3se6_A          259 MSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMEN  338 (967)
T ss_dssp             BCGGGCCEEEECCEEEEEECTTCCEEEEEECGGGGGGGHHHHHHHHHHHHHHHHHHTCCCCSSEEEEEEESSCSSSEECC
T ss_pred             ccceeEEEEEeceEEEEeecCCCcEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccEEEecCCCCccccc
Confidence            89999999999999987765679999999999998899999999999999999999999999999999999999999999


Q ss_pred             hchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          81 WGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        81 ~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      +|+++|+++.++++++.++...++++..+||||+|||||||+||++||+|+
T Consensus       339 ~Glity~e~~ll~d~~~s~~~~k~~~~~vIaHElAHqWFGnlVT~~wW~dl  389 (967)
T 3se6_A          339 WGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDI  389 (967)
T ss_dssp             TTEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHGGGTBTTTEEESSGGGT
T ss_pred             CCccccchhheecCcccCCHHhhHhHHHHHHHHHHHHHhcCccccCCCccc
Confidence            999999999999999888888899999999999999999999999999985

>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*

Probab=100.00  E-value=2.5e-39  Score=253.71  Aligned_cols=131  Identities=37%  Similarity=0.587  Sum_probs=120.3

Q ss_pred             CCceeeeeEEecceEeeee-----ecCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCC
Q psy6925           1 MSTYLVAVVVGEFDYVEET-----SSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSC   75 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~   75 (131)
                      ||+|+++|++|+|++++..     .+.++++++|++|+..+.++++++.+++++++|+++||+||||+|+++|++|++..
T Consensus       185 mstYLvA~~vG~f~~~~~~~~t~~~G~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~kyd~VavPdF~~  264 (889)
T 3ebh_A          185 KPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNV  264 (889)
T ss_dssp             ECGGGCCEEEECEEEEEEEEECSSSCCEEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSS
T ss_pred             cchhheeeEEecceEEeeeeeecCCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCCCceEEEEeccccc
Confidence            7999999999999988753     22348899999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          76 GAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        76 ~~me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      ||||++|+++|+++.++.++...+...+..+..+|+||+|||||||+|||+||+|+
T Consensus       265 GaMEN~GLvtf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHQWFGNlVT~~~W~dl  320 (889)
T 3ebh_A          265 GAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQL  320 (889)
T ss_dssp             SEECCTTEEEEEGGGTCCCTTTSCTHHHHHHHHHHHHHHHTTTBTTTBEESSGGGH
T ss_pred             hhhcCCceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhcCeeeecccccc
Confidence            99999999999999999888777777788888999999999999999999999984

>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*

Probab=100.00  E-value=1.1e-39  Score=257.79  Aligned_cols=131  Identities=52%  Similarity=0.989  Sum_probs=122.9

Q ss_pred             CCceeeeeEEecceEeeeeecCCeEEEEEecCCccc--hHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCcch
Q psy6925           1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKRE--QGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAM   78 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~m   78 (131)
                      ||||++||++|+|+.++..+.+|+++++|++|+..+  ..+++++.+++++++|+++||.|||++|+++|++|++..|||
T Consensus       209 mstYL~a~~vg~f~~~~~~~~~g~~~~v~~~p~~~~~~~~~~al~~~~~~l~~~e~~~~~~Yp~~k~d~v~vpdf~~gaM  288 (909)
T 4fke_A          209 MSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQIALPDFNAGAM  288 (909)
T ss_dssp             BCGGGCCEEEESCEEEEEECTTSCEEEEEECHHHHHTTTTHHHHHHHHHHHHHHHHHTTSCCSSSEEEEEEETTCTTCEE
T ss_pred             ccceeeEEEecceEEEeeccCCCcEEEEEEecchhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccEEEecCCCCccc
Confidence            899999999999999888777899999999998654  456889999999999999998899999999999999999999


Q ss_pred             hhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          79 ENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        79 e~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      |++|+++|+++.+|++++.++...+.++..+||||+|||||||+||++||+|+
T Consensus       289 En~glit~~e~~ll~d~~~s~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dl  341 (909)
T 4fke_A          289 ENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDL  341 (909)
T ss_dssp             CCTTEEEEEHHHHCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGH
T ss_pred             ccCcccccccceeecCcccCChHHHHHHHHHHHHHHHhhhhcCeecccccCcc
Confidence            99999999999999999999999999999999999999999999999999984

>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*

Probab=100.00  E-value=1.1e-37  Score=245.16  Aligned_cols=131  Identities=31%  Similarity=0.533  Sum_probs=120.6

Q ss_pred             CCceeeeeEEecceEeeee--e--cCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCc
Q psy6925           1 MSTYLVAVVVGEFDYVEET--S--SDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCG   76 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~--~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~   76 (131)
                      ||+|++||++|+|++++..  +  ++++++++|++|+..+.++++++.+++++++|+++||+|||++++++|++|++..|
T Consensus       203 mstYL~A~~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~diVavPdf~~G  282 (891)
T 3b34_A          203 KPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMG  282 (891)
T ss_dssp             ECGGGCCEEEECCEEEEEEEECTTCCEEEEEEEECTTCGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSS
T ss_pred             ccceeeEEEeccceEEeeeeeccCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCcC
Confidence            7999999999999988753  2  23589999999999888999999999999999999999999999999999999999


Q ss_pred             chhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          77 AMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        77 ~me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      |||++|+++|+++.++.++...+...+..+..+|+||+|||||||+|||+||+|+
T Consensus       283 aMEn~GLitf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHqWFGNlVT~~~W~dl  337 (891)
T 3b34_A          283 AMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQL  337 (891)
T ss_dssp             EECCTTEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGH
T ss_pred             ccccCceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhCCCCcccchhhc
Confidence            9999999999999999988877777888889999999999999999999999874

>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*

Probab=100.00  E-value=6.8e-38  Score=244.46  Aligned_cols=127  Identities=43%  Similarity=0.881  Sum_probs=118.0

Q ss_pred             CCceeeeeEEecceEeeeeecCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhh
Q psy6925           1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMEN   80 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~   80 (131)
                      ||+|++||++|+|+..+.... |+++++|++|+  +..+++++.+++++++|+++||+|||++|+++|++|++..||||+
T Consensus       158 mstYL~a~~vg~f~~~~~~~~-gv~~~v~~~~~--~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn  234 (780)
T 1z5h_A          158 MSTYLLYVGIGKFRYEYEKYR-DIDLILASLKD--IRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMEN  234 (780)
T ss_dssp             BCGGGCCEEEECCEEEEEEET-TEEEEEEESSC--CCCSHHHHHHHHHHHHHHHHHSSCCSSSEEEEEEETTCTTCEECC
T ss_pred             ccceEEEEEEeccEEEeeccC-CeeEEEEEccc--hhHHHHHHHHHHHHHHHHHHhCCCCCCccCCEEEcCCCCCCcccc
Confidence            799999999999999887654 99999999998  567889999999999999999999999999999999999999999


Q ss_pred             hchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          81 WGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        81 ~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      +|+++|+++.++++ +.++...++++..+++||+|||||||+|||+||+|+
T Consensus       235 ~glit~~e~~ll~~-~~~~~~~~~~~~~viaHElaHqWfGnlVT~~~W~dl  284 (780)
T 1z5h_A          235 WGAITFREIYMDIA-ENSAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDL  284 (780)
T ss_dssp             TTEEEEEHHHHSCC-TTSCHHHHHHHHHHHHHHHHHTTBTTTEEESSGGGH
T ss_pred             cCeeEeecceEeec-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCcccc
Confidence            99999999988888 677778888889999999999999999999999984

>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}

Probab=100.00  E-value=1.7e-37  Score=243.97  Aligned_cols=131  Identities=33%  Similarity=0.536  Sum_probs=120.7

Q ss_pred             CCceeeeeEEecceEeeee--e--cCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCCc
Q psy6925           1 MSTYLVAVVVGEFDYVEET--S--SDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCG   76 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~--~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~   76 (131)
                      ||+|++||++|+|..++..  +  ++++++++|++|+..+.++++++.+++++++|+++||+|||++++++|++|++..|
T Consensus       178 mstYL~A~~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~d~Vavpdf~~G  257 (867)
T 2gtq_A          178 KPSYLFALVAGDLAVTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMG  257 (867)
T ss_dssp             BCGGGCCEEEECCEEEEEEEECTTSCEEEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESSCSSS
T ss_pred             ccccceeEEEecceEeeeceeccCCCceEEEEEeccccHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCcc
Confidence            7999999999999988763  2  23589999999999888899999999999999999999999999999999999999


Q ss_pred             chhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          77 AMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        77 ~me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      |||++|+++|+++.++.+++..+...+..+..+|+||+|||||||+|||+||+|+
T Consensus       258 aMEn~glitf~e~~ll~~~~~~~~~~~~~i~~vIaHElAHqWfGnlVT~~~W~dl  312 (867)
T 2gtq_A          258 AMENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQL  312 (867)
T ss_dssp             EECCTTEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTBEESSGGGH
T ss_pred             ccccCCceeecccccccCcccCcHHHHHHHHHHHHHHHHHHhcCcEEEecccccc
Confidence            9999999999999999888887878888889999999999999999999999874

>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...

Probab=100.00  E-value=2.6e-34  Score=219.40  Aligned_cols=117  Identities=30%  Similarity=0.514  Sum_probs=103.4

Q ss_pred             CCceeeeeEEecceEeeeeecCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEe-cCCCCcchh
Q psy6925           1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAV-PDFSCGAME   79 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~-p~~~~~~me   79 (131)
                      ||+|++||+||+|+..+    .|+++++|++|+..+.++..++.+++++++|++++| |||+++++++++ |+++.||||
T Consensus       195 mstYL~a~~vg~f~~~~----~~~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~~g-~Yp~~~~~~vv~~p~f~~GgME  269 (608)
T 3u9w_A          195 IPCYLIALVVGALESRQ----IGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGME  269 (608)
T ss_dssp             ECGGGCCEEEESCEEEE----EETTEEEEECHHHHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEEC
T ss_pred             cccEEEEEEEeeeeeEe----cCCceEEEeChhhHHHHHHHHHHHHHHHHhHHhcCC-CCCchhhceeeecccccchhhh
Confidence            79999999999998764    356788999999888888999999999999999999 999999998887 788999999


Q ss_pred             hhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          80 NWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        80 ~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      ++|+++++++.++.+..         +..+||||+|||||||+||++||+|+
T Consensus       270 n~gl~~~~~~~l~~~~~---------~~~viaHElAHqWfGnlVT~~~W~d~  312 (608)
T 3u9w_A          270 NPCLTFVTPTLLAGDKS---------LSNVIAHEISHSWTGNLVTNKTWDHF  312 (608)
T ss_dssp             CTTEEEECGGGCCSSST---------TTHHHHHHHHTTTBTTTEEESSGGGH
T ss_pred             cCcceeeeeeeecccch---------hHHHHHHHhhhhhhcCcCccccccch
Confidence            99999999986654432         23699999999999999999999984

>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}

Probab=99.97  E-value=8.3e-33  Score=211.06  Aligned_cols=117  Identities=26%  Similarity=0.468  Sum_probs=101.0

Q ss_pred             CCceeeeeEEecceEeeeeecCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEec-CCCCcchh
Q psy6925           1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVP-DFSCGAME   79 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p-~~~~~~me   79 (131)
                      ||+|++||++|+|+..+    .|+++++|++|+..+.++..++.+++++++++++|| |||++++++|++| +++.||||
T Consensus       202 mstYl~a~~vg~f~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~fG-~YP~~k~d~v~~p~~f~~GgME  276 (605)
T 3cia_A          202 IPPYLIAIGVGDLEFKA----MSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYG-KYRWGRYDLLMLPPSFPFGGME  276 (605)
T ss_dssp             ECGGGCCEEEESCEEEE----SSSSEEEEECSTTHHHHHHHSTTHHHHHHHHHHHHC-CCTTSCEEEEECCTTCSSSEEC
T ss_pred             ccceeEEEEEeeeeEec----CCCeEEEEeccChHHHHHHHHHHHHHHHHHHHHHhC-CCCCccccEEEECCccCCCccc
Confidence            79999999999999875    366799999999888888888899999999999999 9999999999985 88999999


Q ss_pred             hhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          80 NWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        80 ~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      ++|+++ .+..++.++..        ...+||||+|||||||+|||+||+|+
T Consensus       277 n~gltf-~~~~ll~~~~~--------~~~viaHElaHqWfGnlVT~~~W~dl  319 (605)
T 3cia_A          277 NPRLSF-ITPTVVAGDKS--------LVNLIAHELAHSWSGNLVTNESWRDL  319 (605)
T ss_dssp             CTTEEE-ECGGGCCSSSC--------STHHHHHHHHHTTBTTTEEESSTTST
T ss_pred             CCcEEE-ecchhccCcHH--------HHHHHHHHHHHHhhccccccCcchHh
Confidence            999864 45545544321        24699999999999999999999985

>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*

Probab=99.97  E-value=5.5e-33  Score=212.82  Aligned_cols=117  Identities=26%  Similarity=0.416  Sum_probs=100.2

Q ss_pred             CCceeeeeEEecceEeeeeecCCeEEEEEecCCccchHHHHHH-HHHHHHHHHHHhhccccCCCcccEEEec-CCCCcch
Q psy6925           1 MSTYLVAVVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALH-VASKVLPFYKDYFNIAYPLPKIDLVAVP-DFSCGAM   78 (131)
Q Consensus         1 ms~y~~~~~vg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~yP~~~~~~v~~p-~~~~~~m   78 (131)
                      ||+|++||++|+|+..+.    |+++++|++|+..+.++..++ .+++++++|+++|| |||++++++|++| +++.|||
T Consensus       202 mstYLva~~vg~f~~~~~----g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~fG-pYP~~k~d~v~~pp~f~~GgM  276 (632)
T 2xq0_A          202 IPAYLIGIASGDLSSAPI----GPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIF-EYEWGTYDILVNVDSYPYGGM  276 (632)
T ss_dssp             ECGGGCCEEESSCEEEEE----ETTEEEEECHHHHHHHHHHHTTTHHHHHHHHHHHSC-CCCSSCCCEEECCTTCCSSEE
T ss_pred             cchhheeeeEecceeecc----CCeeEEEEccchHHHHHHHHHHHHHHHHHHHHHhcc-cCCcccccEEEECCCCCCCcc
Confidence            799999999999998753    557899999988778888888 89999999999999 9999999999984 8899999


Q ss_pred             hhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925          79 ENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus        79 e~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                      |++|+++..+. ++.++..        ...++|||+|||||||+||++||+|+
T Consensus       277 En~glt~~~~~-ll~~~~~--------~~~viaHElAHqWfGnlVT~~~W~dl  320 (632)
T 2xq0_A          277 ESPNMTFATPT-LLAHDRS--------NIDVIAHELAHSWSGNLVTNCSWNHF  320 (632)
T ss_dssp             CCTTCEEECGG-GCCSSSC--------STHHHHHHHHHTTBTTTEEESSGGGT
T ss_pred             ccceEEEeece-eccCchh--------HHHHHHHHHHHHHhcCCCccCCcchh
Confidence            99998655444 5544321        24699999999999999999999985

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=99.81  E-value=2.2e-19  Score=136.80  Aligned_cols=119  Identities=13%  Similarity=0.132  Sum_probs=88.8

Q ss_pred             eEEecceEeeeeecCCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEe-cCCCCcchhhhchhh-
Q psy6925           8 VVVGEFDYVEETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAV-PDFSCGAMENWGLVT-   85 (131)
Q Consensus         8 ~~vg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~-p~~~~~~me~~g~i~-   85 (131)
                      +.+|+|+..+... +|+++++........+.+..+..+++++++++++|| +|||++|++++. ++.+.||||+.+..+ 
T Consensus       168 v~~G~~~~~~~~~-~g~p~~l~v~~~~~~d~~~~~~~~~~~~~~~~~~fG-~yP~~~Y~fl~~~~~~~~GgmEh~~st~l  245 (597)
T 4fgm_A          168 FLIGDLTIEEFIA-HGIKHSLVLSGRHYADTSRITADLAKICETQISLFE-EAPFQSYTFLTMVVGNGFGGLEHRNSTAL  245 (597)
T ss_dssp             EEEESCEEEEEEE-TTEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHT-SCSCSEEEEEEEEESSCCEEEECSSEEEE
T ss_pred             hcccCcEEEEecc-CCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC-CCCCCceEEEEEccCCCCcccccCCceEE
Confidence            5688998877654 688888655444444568888999999999999999 999999999764 345788999998644 


Q ss_pred             -hhccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcCccCcccc
Q psy6925          86 -YREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWW  128 (131)
Q Consensus        86 -~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqWfG~~vt~~~W  128 (131)
                       +++..+.......+.........+++||++|||||+.|+|+.|
T Consensus       246 ~~~~~~l~~~~~~~~~~~~~~~~~liaHE~~H~W~g~~i~p~~~  289 (597)
T 4fgm_A          246 LCSRKDLISAHQYEMNDNYQTFLSLCCHEYFHSWNIKTLKPKAF  289 (597)
T ss_dssp             EEEGGGSCCTTCCSCCHHHHHHHHHHHHHHHHTTBTTTBCBGGG
T ss_pred             EeCchhccccccccchhhhhchhhhHhhhhheeecccccccccc
Confidence             3444322111112234556667899999999999999999887

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.84  E-value=0.051  Score=32.18  Aligned_cols=67  Identities=21%  Similarity=0.198  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhhccccCCCcccEEEecCCCCcchhhh-----chhhhhccccccCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy6925          44 VASKVLPFYKDYFNIAYPLPKIDLVAVPDFSCGAMENW-----GLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQW  118 (131)
Q Consensus        44 ~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~~~me~~-----g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEiaHqW  118 (131)
                      .+.+.++-+.+..|.+.  +  ++.++++...++...+     +.+.+... ++ +. .    ....+..+++||++|-=
T Consensus        27 ~L~~~~~~l~~~~~~~~--~--~v~v~~~~~~NAf~~g~~~~~~~i~v~~g-Ll-~~-l----~~~El~aVlaHElgH~~   95 (107)
T 3cqb_A           27 WLLETVGRQAQQAGIGM--P--TVAIYDSADINAFATGAKRDDSLVAVSTG-LL-HN-M----TRDEAEAVLAHEVSHIA   95 (107)
T ss_dssp             HHHHHHHHHHHHHTCCC--C--EEEEECCSSEEEEEECCC--CCEEEEEHH-HH-HH-S----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCC--C--eEEEEECCCcCEEEEecCCCCCEEEEcHH-HH-hh-C----CHHHHHHHHHHHHHHHH
Confidence            45667777777888553  3  3444443222222222     22333332 22 10 1    12456789999999964


Q ss_pred             hcC
Q psy6925         119 FGN  121 (131)
Q Consensus       119 fG~  121 (131)
                      -++
T Consensus        96 ~~h   98 (107)
T 3cqb_A           96 NGD   98 (107)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            443

>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*

Probab=91.36  E-value=0.42  Score=31.63  Aligned_cols=13  Identities=31%  Similarity=0.537  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHh
Q psy6925         106 IALVVGHELAHQW  118 (131)
Q Consensus       106 ~~~~iahEiaHqW  118 (131)
                      ...++|||++|+.
T Consensus       136 ~a~~~AHElGHnl  148 (214)
T 1r55_A          136 AAATMAHEIGHSL  148 (214)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            4579999999984

>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}

Probab=89.76  E-value=1  Score=29.41  Aligned_cols=13  Identities=46%  Similarity=0.828  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHh
Q psy6925         106 IALVVGHELAHQW  118 (131)
Q Consensus       106 ~~~~iahEiaHqW  118 (131)
                      ...++|||++|+.
T Consensus       135 ~a~~~AHElGH~l  147 (202)
T 1yp1_A          135 MAVVMAHELGHNL  147 (202)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            4679999999983

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}

Probab=89.10  E-value=0.53  Score=32.02  Aligned_cols=14  Identities=36%  Similarity=0.603  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHH
Q psy6925         104 QNIALVVGHELAHQ  117 (131)
Q Consensus       104 ~~~~~~iahEiaHq  117 (131)
                      ..+..+|+||++|-
T Consensus        98 ~ELaaVLaHElgH~  111 (253)
T 3c37_A           98 TELAGVLAHEINHA  111 (253)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            45678999999995

>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A

Probab=89.04  E-value=1.3  Score=28.73  Aligned_cols=13  Identities=38%  Similarity=0.805  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHh
Q psy6925         106 IALVVGHELAHQW  118 (131)
Q Consensus       106 ~~~~iahEiaHqW  118 (131)
                      ...++|||++|+.
T Consensus       133 ~a~~~AHElGH~l  145 (197)
T 1bud_A          133 VAITLAHEMAHNL  145 (197)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhc
Confidence            4679999999984

>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A

Probab=88.37  E-value=1.4  Score=28.74  Aligned_cols=13  Identities=38%  Similarity=0.756  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHh
Q psy6925         106 IALVVGHELAHQW  118 (131)
Q Consensus       106 ~~~~iahEiaHqW  118 (131)
                      ...++|||++|+.
T Consensus       136 ~a~~~AHElGH~l  148 (202)
T 2w15_A          136 VAVTMAHELGHNL  148 (202)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhc
Confidence            4679999999983

>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A

Probab=88.28  E-value=1.1  Score=29.29  Aligned_cols=13  Identities=31%  Similarity=0.693  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHh
Q psy6925         106 IALVVGHELAHQW  118 (131)
Q Consensus       106 ~~~~iahEiaHqW  118 (131)
                      ...++|||++|+.
T Consensus       136 ~a~~~AHElGHnl  148 (202)
T 1atl_A          136 MGVTMAHELGHNL  148 (202)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             eEEEehhhhcccc
Confidence            4579999999983

>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9

Probab=88.20  E-value=1.1  Score=29.10  Aligned_cols=13  Identities=38%  Similarity=0.741  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHh
Q psy6925         106 IALVVGHELAHQW  118 (131)
Q Consensus       106 ~~~~iahEiaHqW  118 (131)
                      ...++|||++|+.
T Consensus       135 ~a~~~AHElGH~l  147 (197)
T 1qua_A          135 MAVTMAHELGHNL  147 (197)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            4579999999983

>2ejq_A Hypothetical protein TTHA0227; NPPSFA, national project on protein structural and functional analyses; 2.08A {Thermus thermophilus} SCOP: d.92.1.17

Probab=87.90  E-value=0.26  Score=30.30  Aligned_cols=27  Identities=19%  Similarity=0.149  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCccCccccC
Q psy6925         102 TRQNIALVVGHELAHQWFGNLVTMEWWT  129 (131)
Q Consensus       102 ~~~~~~~~iahEiaHqWfG~~vt~~~W~  129 (131)
                      -...+..++.||+||. ||.+-....|+
T Consensus        85 L~~~V~~tvvHEiaHh-fe~lag~~gls  111 (130)
T 2ejq_A           85 WEAEVWETMLHELRHH-LESLAGRDDLV  111 (130)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHTTC---
T ss_pred             HHHHHHHHHHHHhHHH-HHhhcccCCCC
Confidence            3456678999999998 44444444443

>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*

Probab=87.79  E-value=1.3  Score=32.52  Aligned_cols=14  Identities=29%  Similarity=0.629  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHh
Q psy6925         105 NIALVVGHELAHQW  118 (131)
Q Consensus       105 ~~~~~iahEiaHqW  118 (131)
                      ....++||||+|++
T Consensus       145 ~~a~t~AHElGHnl  158 (427)
T 2ero_A          145 LVAIAMAHEMGHNL  158 (427)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            44579999999984

>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A

Probab=86.80  E-value=1.2  Score=29.09  Aligned_cols=13  Identities=38%  Similarity=0.716  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHh
Q psy6925         106 IALVVGHELAHQW  118 (131)
Q Consensus       106 ~~~~iahEiaHqW  118 (131)
                      ...++|||++|..
T Consensus       138 ~a~~~AHElGH~l  150 (203)
T 1kuf_A          138 VAVTMTHELGHNL  150 (203)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             hHHHHHHHhhhhc
Confidence            5679999999983

>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}

Probab=85.11  E-value=1.2  Score=32.71  Aligned_cols=14  Identities=36%  Similarity=0.722  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHh
Q psy6925         105 NIALVVGHELAHQW  118 (131)
Q Consensus       105 ~~~~~iahEiaHqW  118 (131)
                      ....++||||+|+.
T Consensus       138 ~~a~t~AHElGHnl  151 (427)
T 2e3x_A          138 KTAVIMAHELSHNL  151 (427)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             eeeeehHHHHHHhh
Confidence            44579999999984

>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*

Probab=84.29  E-value=1.7  Score=31.87  Aligned_cols=14  Identities=29%  Similarity=0.695  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHh
Q psy6925         105 NIALVVGHELAHQW  118 (131)
Q Consensus       105 ~~~~~iahEiaHqW  118 (131)
                      ....++||||+|+.
T Consensus       136 ~~a~t~AHElGHnl  149 (419)
T 2dw0_A          136 VVAVIMAHEMGHNL  149 (419)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHc
Confidence            34579999999984

>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}

Probab=83.22  E-value=3.2  Score=30.46  Aligned_cols=13  Identities=31%  Similarity=0.713  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHH
Q psy6925         105 NIALVVGHELAHQ  117 (131)
Q Consensus       105 ~~~~~iahEiaHq  117 (131)
                      ..+.++||||+|.
T Consensus       143 ~~a~t~AHElGHn  155 (422)
T 3k7l_A          143 MVAITMAHEMGHN  155 (422)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHH
Confidence            4567899999997

>3nqx_A MCP-02, secreted metalloprotease MCP02; zinc metalloprotease, alpha/beta protein, hydrolase; 1.70A {Pseudoalteromonas SP} PDB: 3nqy_B 3nqz_B

Probab=82.82  E-value=2.8  Score=29.47  Aligned_cols=72  Identities=19%  Similarity=0.208  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCC---CcchhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHH
Q psy6925          38 GQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFS---CGAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHEL  114 (131)
Q Consensus        38 ~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~---~~~me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEi  114 (131)
                      +..+.-.+.+..++|.++|| .-|+. ..++..-.++   ..+.-....+.|++..-...+ ..+       ..+++||+
T Consensus        74 ~~DAhy~a~~t~d~y~~~~g-r~~id-~~l~~~VHyg~~y~NAfWdg~~m~fGDG~~~~~~-~~s-------lDVv~HE~  143 (306)
T 3nqx_A           74 LNDAHFFGNVIFNMYNDWLG-TAPLS-FQLQMRVHYSSNYENAFWDGSAMTFGDGQNTFYP-LVS-------LDVSAHEV  143 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS-SCSSS-SCEEEEEEESSSCCCEEECSSCEEEECCCSSBSC-SCC-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcC-CCCCC-CceEEEEecCCCccCccccCCEEEEeCCCccccc-ccc-------cchhhhhh
Confidence            44556677899999999999 77765 2332211111   123333334455544321111 111       36999999


Q ss_pred             HHHhh
Q psy6925         115 AHQWF  119 (131)
Q Consensus       115 aHqWf  119 (131)
                      .|-=-
T Consensus       144 tHGvt  148 (306)
T 3nqx_A          144 SHGFT  148 (306)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            99644

>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*

Probab=82.51  E-value=4.6  Score=28.29  Aligned_cols=73  Identities=18%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCCC---cchhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHHHH
Q psy6925          39 QFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFSC---GAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELA  115 (131)
Q Consensus        39 ~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~~---~~me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahEia  115 (131)
                      ..+.-.+.++.++|.+.|| +-++.. .++..-.++.   .+.-....+.|++..-...+ ..       ...+++||++
T Consensus        74 ~DAhy~a~~~~d~y~~~~g-r~~id~-~l~~~Vhyg~~y~NAfWdG~~M~fGDG~~~~~p-~~-------~lDVv~HE~t  143 (301)
T 1u4g_A           74 NDAHFFGGVVFKLYRDWFG-TSPLTH-KLYMKVHYGRSVENAYWDGTAMLFGDGATMFYP-LV-------SLDVAAHEVS  143 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-SCSSSS-CEEEEESCTTTCCCEEECSSCEEECCCCSSBSC-SC-------CHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHcC-CCCCCC-ceEEEEecCCCccCcEecCcEEEeeCCCccccc-cc-------ccceeeeccc
Confidence            4455677899999999999 777763 3433222221   12222223344432211111 11       1369999999


Q ss_pred             HHhhcC
Q psy6925         116 HQWFGN  121 (131)
Q Consensus       116 HqWfG~  121 (131)
                      |-=.-.
T Consensus       144 HGVt~~  149 (301)
T 1u4g_A          144 HGFTEQ  149 (301)
T ss_dssp             HHHHHT
T ss_pred             cceecc
Confidence            975443

>4ger_A Gentlyase metalloprotease; metalloproteinase, tissue disaggregation, thermoly protease, hydrolase; HET: LYS; 1.59A {Paenibacillus polymyxa}

Probab=81.44  E-value=4.7  Score=28.33  Aligned_cols=74  Identities=26%  Similarity=0.184  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCc--ccEE--E-ecCCCCcchhhhchhhhhccc-cccCCCCCCHHHHHHHHHHHH
Q psy6925          38 GQFALHVASKVLPFYKDYFNIAYPLPK--IDLV--A-VPDFSCGAMENWGLVTYREVC-LLVDSQNTSAITRQNIALVVG  111 (131)
Q Consensus        38 ~~~~~~~~~~~l~~~~~~~g~~yP~~~--~~~v--~-~p~~~~~~me~~g~i~~~~~~-~l~~~~~~~~~~~~~~~~~ia  111 (131)
                      +..+...+.+..+||.+.|| .-++..  ..++  + ...--..+.-....+.|++.+ ....+ .      .....+++
T Consensus        63 avdA~~~~~~t~d~y~~~~g-rnsid~~G~~l~~~VHyg~~y~NAfW~g~~m~fGDGdg~~f~~-~------~~slDVva  134 (304)
T 4ger_A           63 GVDAHTYAAKTYDYYKAKFG-RNSIDGRGLQLRSTVHYGSRYNNAFWNGSQMTYGDGDGSTFIA-F------SGDPDVVG  134 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEEEESSSCCCEEECSSCEEEECCCSSSBCC-G------GGSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeEEEEEeCCCCccCceecCCEEEEeCCCCccccc-c------ccccchhh
Confidence            44667788999999999999 777652  2222  1 121112244444445555432 01111 0      11136999


Q ss_pred             HHHHHHhh
Q psy6925         112 HELAHQWF  119 (131)
Q Consensus       112 hEiaHqWf  119 (131)
                      ||+.|-=.
T Consensus       135 HEltHGVt  142 (304)
T 4ger_A          135 HELTHGVT  142 (304)
T ss_dssp             HHHHHHHH
T ss_pred             hccccccc
Confidence            99999644

>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}

Probab=81.20  E-value=4  Score=29.69  Aligned_cols=13  Identities=38%  Similarity=0.595  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHH
Q psy6925         105 NIALVVGHELAHQ  117 (131)
Q Consensus       105 ~~~~~iahEiaHq  117 (131)
                      ..+.++||||+|.
T Consensus       138 ~~a~t~AHElGHn  150 (397)
T 3k7n_A          138 LVASTITHELGHN  150 (397)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHH
Confidence            4457999999997

>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}

Probab=80.47  E-value=7.1  Score=25.46  Aligned_cols=12  Identities=33%  Similarity=0.714  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHH
Q psy6925         106 IALVVGHELAHQ  117 (131)
Q Consensus       106 ~~~~iahEiaHq  117 (131)
                      .+.++|||++|.
T Consensus       133 ~a~~~AHElGH~  144 (208)
T 4dd8_A          133 VACTMAHEMGHN  144 (208)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            456899999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d3b7sa3	252	d.92.1.13 (A:209-460) Leukotriene A4 hydrolase cat	2e-19

>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 252

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 2e-19
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 11/115 (9%)

Query: 18  ETSSDGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAV-PDFSCG 76
           E+   G    V++   + E+  +       +L   +D     Y   + DL+ + P F  G
Sbjct: 2   ESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG-GPYVWGQYDLLVLPPSFPYG 60

Query: 77  AMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHELAHQWFGNLVTMEWWTHL 131
            MEN  L       L            ++++ V+ H+++H W GNLVT + W H 
Sbjct: 61  GMENPCLTFVTPTLL---------AGDKSLSNVIAHQISHSWTGNLVTNKTWDHF 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d3b7sa3	252	Leukotriene A4 hydrolase catalytic domain {Human (	99.97
d1r55a_	203	ADAM33 {Human (Homo sapiens) [TaxId: 9606]}	95.25
d1bswa_	197	Snake venom metalloprotease {Five-pace snake (Agki	94.6
d1nd1a_	202	Snake venom metalloprotease {Terciopelo (Bothrops	93.82
d1quaa_	197	Snake venom metalloprotease {Chinese five-pace sna	93.6
d1atla_	200	Snake venom metalloprotease {Western diamonback ra	92.89
d1kufa_	201	Snake venom metalloprotease {Taiwan habu (Trimeres	90.7
d1u4ga_	298	Elastase {Pseudomonas aeruginosa [TaxId: 287]}	90.6

>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-32  Score=187.49  Aligned_cols=100  Identities=28%  Similarity=0.471  Sum_probs=88.3

Q ss_pred             CCeEEEEEecCCccchHHHHHHHHHHHHHHHHHhhccccCCCcccEEEe-cCCCCcchhhhchhhhhccccccCCCCCCH
Q psy6925          22 DGVLVRVYTPVGKREQGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAV-PDFSCGAMENWGLVTYREVCLLVDSQNTSA  100 (131)
Q Consensus        22 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~-p~~~~~~me~~g~i~~~~~~~l~~~~~~~~  100 (131)
                      .|++|++|++|+..+.++.+++.+++++++|++++| ||||+|+++|++ |++..||||++|+++++++.++.+..    
T Consensus         6 ~g~~vrv~~~p~~~~~~~~~l~~~~~~l~~~e~~~g-~YP~~k~d~v~~~~~~~~ggmE~~~l~~~~~~~~~~~~~----   80 (252)
T d3b7sa3           6 IGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKS----   80 (252)
T ss_dssp             EETTEEEEECGGGHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCTTEEEECGGGCCSSST----
T ss_pred             cCCceEEEEccchHHHHHHHHHHHHHHHHHHHHhCC-CCCchhcCEEEeCCCccccccccceeeeecchhccccch----
Confidence            378999999999999999999999999999999999 999999999998 57788899999999998885543322    


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCccCccccCCC
Q psy6925         101 ITRQNIALVVGHELAHQWFGNLVTMEWWTHL  131 (131)
Q Consensus       101 ~~~~~~~~~iahEiaHqWfG~~vt~~~W~d~  131 (131)
                           +..++|||+|||||||+||+++|+|+
T Consensus        81 -----~~~~iaHE~aHqWfG~~Vt~~~w~~~  106 (252)
T d3b7sa3          81 -----LSNVIAHQISHSWTGNLVTNKTWDHF  106 (252)
T ss_dssp             -----TTHHHHHHHHTTTBTTTEEESSGGGH
T ss_pred             -----HHHHHHHHHHHHHHhhhceeccccch
Confidence                 23589999999999999999999873

>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: ADAM33
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.015  Score=36.59  Aligned_cols=13  Identities=31%  Similarity=0.537  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHh
Q psy6925         106 IALVVGHELAHQW  118 (131)
Q Consensus       106 ~~~~iahEiaHqW  118 (131)
                      ...++||||+|.+
T Consensus       132 ~a~v~AHElGH~l  144 (203)
T d1r55a_         132 AAATMAHEIGHSL  144 (203)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            3468999999984

>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]

Probab=94.60  E-value=0.049  Score=33.87  Aligned_cols=12  Identities=42%  Similarity=0.786  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHh
Q psy6925         107 ALVVGHELAHQW  118 (131)
Q Consensus       107 ~~~iahEiaHqW  118 (131)
                      ..++|||++|+.
T Consensus       134 a~~~AHElGH~l  145 (197)
T d1bswa_         134 AITLAHEMAHNL  145 (197)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hHHHHHHHHhhc
Confidence            458999999973

>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo (Bothrops asper), bap1 [TaxId: 8722]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Terciopelo (Bothrops asper), bap1 [TaxId: 8722]

Probab=93.82  E-value=0.046  Score=34.28  Aligned_cols=14  Identities=36%  Similarity=0.617  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHh
Q psy6925         105 NIALVVGHELAHQW  118 (131)
Q Consensus       105 ~~~~~iahEiaHqW  118 (131)
                      ....++|||++|.+
T Consensus       135 ~~a~~~AHElGH~l  148 (202)
T d1nd1a_         135 WVAVTMAHELGHNL  148 (202)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhc
Confidence            33468999999984

>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese five-pace snake (Agkistrodon acutus), acutolysin C [TaxId: 36307]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Chinese five-pace snake (Agkistrodon acutus), acutolysin C [TaxId: 36307]

Probab=93.60  E-value=0.069  Score=33.21  Aligned_cols=13  Identities=38%  Similarity=0.741  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHh
Q psy6925         106 IALVVGHELAHQW  118 (131)
Q Consensus       106 ~~~~iahEiaHqW  118 (131)
                      ...++|||++|.+
T Consensus       135 ~~~~~AHElGH~l  147 (197)
T d1quaa_         135 MAVTMAHELGHNL  147 (197)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhc
Confidence            3468999999973

>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]

Probab=92.89  E-value=0.11  Score=32.35  Aligned_cols=11  Identities=36%  Similarity=0.764  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHH
Q psy6925         107 ALVVGHELAHQ  117 (131)
Q Consensus       107 ~~~iahEiaHq  117 (131)
                      ..++|||++|.
T Consensus       135 a~~~AHElGH~  145 (200)
T d1atla_         135 GVTMAHELGHN  145 (200)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            46899999998

>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]

Probab=90.70  E-value=0.19  Score=31.23  Aligned_cols=13  Identities=38%  Similarity=0.716  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHh
Q psy6925         106 IALVVGHELAHQW  118 (131)
Q Consensus       106 ~~~~iahEiaHqW  118 (131)
                      ...++|||++|.+
T Consensus       136 ~a~~~AHElGH~l  148 (201)
T d1kufa_         136 VAVTMTHELGHNL  148 (201)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            3468999999985

>d1u4ga_ d.92.1.2 (A:) Elastase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Thermolysin-like
domain: Elastase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.60  E-value=0.38  Score=32.06  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhccccCCCcccEEEecCCC--C-cchhhhchhhhhccccccCCCCCCHHHHHHHHHHHHHH
Q psy6925          37 QGQFALHVASKVLPFYKDYFNIAYPLPKIDLVAVPDFS--C-GAMENWGLVTYREVCLLVDSQNTSAITRQNIALVVGHE  113 (131)
Q Consensus        37 ~~~~~~~~~~~~l~~~~~~~g~~yP~~~~~~v~~p~~~--~-~~me~~g~i~~~~~~~l~~~~~~~~~~~~~~~~~iahE  113 (131)
                      .+..+...+.++.++|.+.|| .-|+.. +++..-.+.  . .+.-....+.|++..-...+-. +       ..+++||
T Consensus        72 ~~~dA~y~~~~~~d~y~~~~g-r~~ld~-~~~~~vh~g~~~~NAfW~g~~m~fGdG~~~~~~~~-s-------lDVvaHE  141 (298)
T d1u4ga_          72 PLNDAHFFGGVVFKLYRDWFG-TSPLTH-KLYMKVHYGRSVENAYWDGTAMLFGDGATMFYPLV-S-------LDVAAHE  141 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS-SCSSSS-CEEEEESCTTTCCCEEECSSCEEECCCCSSBSCSC-C-------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCCcCC-CceEEEecCCccccceeccceeeeecCCCcccccc-c-------cceeeee
Confidence            355677888999999999999 668764 222222222  1 2333333444443321111111 1       3599999


Q ss_pred             HHHHhhcC
Q psy6925         114 LAHQWFGN  121 (131)
Q Consensus       114 iaHqWfG~  121 (131)
                      ++|-=--.
T Consensus       142 ~tHGvt~~  149 (298)
T d1u4ga_         142 VSHGFTEQ  149 (298)
T ss_dssp             HHHHHHHT
T ss_pred             ccceeeec
Confidence            99975433