Psyllid ID: psy7107

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70------
MVFLVVLSCGGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK
cEEEEEEccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHcc
cEEEEEEcccccccccccccccccccHHccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHc
MVFLVVLScgglpykvysghegvltekrkQRRIRTTFTSAQLKELERAFQethypdiytrEEIAMKIDLTEARVQK
MVFLVVLscgglpykvysghegvltekrkqrrirttfTSAQLKELErafqethypdiytreeIAMKIDLTEARVQK
MVFLVVLSCGGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK
*VFLVVLSCGGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKID********
*VF********************************TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLT*A*V**
MVFLVVLSCGGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK
MVFLVVLSCG***********************RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEA****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVFLVVLSCGGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query76 2.2.26 [Sep-21-2011]
O35690 314 Paired mesoderm homeobox yes N/A 0.855 0.207 0.787 1e-23
Q99453 314 Paired mesoderm homeobox yes N/A 0.855 0.207 0.787 1e-23
Q62066 280 Paired mesoderm homeobox no N/A 0.842 0.228 0.784 1e-22
Q62782 281 Paired mesoderm homeobox no N/A 0.842 0.227 0.784 2e-22
O14813 284 Paired mesoderm homeobox no N/A 0.842 0.225 0.784 2e-22
Q26602 288 Homeobox protein SMOX-3 ( N/A N/A 0.644 0.170 0.897 1e-19
Q96QS3 562 Homeobox protein ARX OS=H no N/A 0.697 0.094 0.781 9e-19
A6YP92 566 Homeobox protein ARX OS=R no N/A 0.697 0.093 0.781 1e-18
O35085 564 Homeobox protein ARX OS=M no N/A 0.697 0.093 0.781 2e-18
O42115 453 Aristaless-related homeob no N/A 0.697 0.116 0.781 5e-18
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1 SV=1 Back     alignment and function desciption
 Score =  108 bits (269), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/66 (78%), Positives = 58/66 (87%), Gaps = 1/66 (1%)

Query: 10  GGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDL 69
             +PYK+++ H G L EKRKQRRIRTTFTSAQLKELER F ETHYPDIYTREE+A+KIDL
Sbjct: 79  AAVPYKLFTDHGG-LNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDL 137

Query: 70  TEARVQ 75
           TEARVQ
Sbjct: 138 TEARVQ 143

Mus musculus (taxid: 10090)
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1 SV=2 Back     alignment and function description
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2 SV=1 Back     alignment and function description
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a PE=2 SV=1 Back     alignment and function description
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1 SV=2 Back     alignment and function description
>sp|Q26602|SMOX3_SCHMA Homeobox protein SMOX-3 (Fragment) OS=Schistosoma mansoni GN=SMOX-3 PE=2 SV=1 Back     alignment and function description
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1 Back     alignment and function description
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1 Back     alignment and function description
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3 Back     alignment and function description
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query76
270005124169 hypothetical protein TcasGA2_TC007133 [T 0.973 0.437 0.891 2e-31
189236734 268 PREDICTED: similar to paired box protein 0.855 0.242 0.969 3e-30
242019572168 Paired mesoderm homeobox protein 2B, put 0.907 0.410 0.927 5e-30
170045356 479 paired box protein [Culex quinquefasciat 0.855 0.135 0.953 7e-30
118792272108 AGAP012303-PA [Anopheles gambiae str. PE 0.881 0.620 0.910 2e-28
157129916 283 paired box protein, putative [Aedes aegy 0.855 0.229 0.953 2e-28
340726685 314 PREDICTED: hypothetical protein LOC10064 0.842 0.203 0.923 1e-26
332027511 212 Paired mesoderm homeobox protein 2B [Acr 0.855 0.306 0.909 1e-26
328788663 196 PREDICTED: paired mesoderm homeobox prot 0.842 0.326 0.923 2e-26
322797345 185 hypothetical protein SINV_02900 [Solenop 0.842 0.345 0.923 3e-26
>gi|270005124|gb|EFA01572.1| hypothetical protein TcasGA2_TC007133 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 70/74 (94%)

Query: 2  VFLVVLSCGGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTRE 61
          V+ + +S GGLPYKVY GH+GVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTRE
Sbjct: 12 VYFLSISRGGLPYKVYPGHDGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTRE 71

Query: 62 EIAMKIDLTEARVQ 75
          EIAMKIDLTEARVQ
Sbjct: 72 EIAMKIDLTEARVQ 85

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189236734|ref|XP_001815189.1| PREDICTED: similar to paired box protein [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242019572|ref|XP_002430234.1| Paired mesoderm homeobox protein 2B, putative [Pediculus humanus corporis] gi|212515334|gb|EEB17496.1| Paired mesoderm homeobox protein 2B, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|170045356|ref|XP_001850278.1| paired box protein [Culex quinquefasciatus] gi|167868438|gb|EDS31821.1| paired box protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|118792272|ref|XP_320238.3| AGAP012303-PA [Anopheles gambiae str. PEST] gi|116116821|gb|EAA00674.4| AGAP012303-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157129916|ref|XP_001661815.1| paired box protein, putative [Aedes aegypti] gi|108872028|gb|EAT36253.1| AAEL011647-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|340726685|ref|XP_003401684.1| PREDICTED: hypothetical protein LOC100649005 [Bombus terrestris] Back     alignment and taxonomy information
>gi|332027511|gb|EGI67588.1| Paired mesoderm homeobox protein 2B [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328788663|ref|XP_001120833.2| PREDICTED: paired mesoderm homeobox protein 2B [Apis mellifera] Back     alignment and taxonomy information
>gi|322797345|gb|EFZ19457.1| hypothetical protein SINV_02900 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query76
UNIPROTKB|H0YAD2180 PHOX2B "Paired mesoderm homeob 0.842 0.355 0.815 1.4e-23
UNIPROTKB|F1NMR5229 F1NMR5 "Uncharacterized protei 0.828 0.275 0.812 4.8e-23
UNIPROTKB|F1NMR6213 F1NMR6 "Uncharacterized protei 0.828 0.295 0.812 4.8e-23
UNIPROTKB|E1BME7 315 PHOX2B "Uncharacterized protei 0.828 0.2 0.812 4.8e-23
UNIPROTKB|E2RMY1 314 PHOX2B "Uncharacterized protei 0.828 0.200 0.812 4.8e-23
UNIPROTKB|Q99453 314 PHOX2B "Paired mesoderm homeob 0.828 0.200 0.812 4.8e-23
MGI|MGI:1100882 314 Phox2b "paired-like homeobox 2 0.828 0.200 0.812 4.8e-23
UNIPROTKB|F2Z3R9 314 Phox2b "Protein Phox2b" [Rattu 0.828 0.200 0.812 4.8e-23
ZFIN|ZDB-GENE-050407-3 285 phox2bb "paired-like homeobox 0.815 0.217 0.825 6.1e-23
UNIPROTKB|F1NMR7116 F1NMR7 "Uncharacterized protei 0.815 0.534 0.809 1.6e-22
UNIPROTKB|H0YAD2 PHOX2B "Paired mesoderm homeobox protein 2B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 53/65 (81%), Positives = 58/65 (89%)

Query:    11 GLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLT 70
             G PYK+++ H G L EKRKQRRIRTTFTSAQLKELER F ETHYPDIYTREE+A+KIDLT
Sbjct:    20 GFPYKLFTDHGG-LNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLT 78

Query:    71 EARVQ 75
             EARVQ
Sbjct:    79 EARVQ 83
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
UNIPROTKB|F1NMR5 F1NMR5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NMR6 F1NMR6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BME7 PHOX2B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMY1 PHOX2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q99453 PHOX2B "Paired mesoderm homeobox protein 2B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1100882 Phox2b "paired-like homeobox 2b" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z3R9 Phox2b "Protein Phox2b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050407-3 phox2bb "paired-like homeobox 2bb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NMR7 F1NMR7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q99453PHX2B_HUMANNo assigned EC number0.78780.85520.2070yesN/A
O35690PHX2B_MOUSENo assigned EC number0.78780.85520.2070yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query76
pfam0004657 pfam00046, Homeobox, Homeobox domain 5e-17
cd0008659 cd00086, homeodomain, Homeodomain; DNA binding dom 6e-14
smart0038957 smart00389, HOX, Homeodomain 2e-13
COG5576156 COG5576, COG5576, Homeodomain-containing transcrip 9e-06
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain Back     alignment and domain information 
 Score = 67.1 bits (165), Expect = 5e-17
 Identities = 24/45 (53%), Positives = 32/45 (71%)

Query: 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
          RR RTTFT  QL+ELE+ F++  YP    REE+A K+ LTE +V+
Sbjct: 1  RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVK 45

Length = 57
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>gnl|CDD|197696 smart00389, HOX, Homeodomain Back     alignment and domain information
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 76
KOG0488|consensus309 99.47
KOG0484|consensus125 99.44
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 99.37
KOG2251|consensus 228 99.36
KOG0842|consensus 307 99.34
KOG0850|consensus245 99.34
KOG0843|consensus197 99.3
KOG0489|consensus261 99.28
KOG0493|consensus342 99.26
KOG0487|consensus308 99.2
PF0004657 Homeobox: Homeobox domain not present here.; Inter 99.19
KOG0485|consensus 268 99.16
KOG0494|consensus 332 99.05
KOG0486|consensus 351 99.02
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 99.02
KOG0492|consensus246 99.02
cd0008659 homeodomain Homeodomain; DNA binding domains invol 98.94
KOG0844|consensus 408 98.93
KOG0848|consensus317 98.91
KOG0491|consensus194 98.85
KOG0490|consensus 235 98.6
KOG0849|consensus 354 98.57
COG5576156 Homeodomain-containing transcription factor [Trans 98.42
KOG3802|consensus398 98.02
KOG0847|consensus288 97.98
KOG0483|consensus 198 97.89
KOG2252|consensus558 97.72
KOG4577|consensus 383 97.53
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 96.73
KOG0774|consensus334 96.28
KOG0490|consensus235 95.72
KOG0775|consensus304 95.71
KOG1168|consensus385 94.66
PF0496753 HTH_10: HTH DNA binding domain; InterPro: IPR00705 92.69
PF0421853 CENP-B_N: CENP-B N-terminal DNA-binding domain; In 92.48
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 88.62
COG3413215 Predicted DNA binding protein [General function pr 84.96
KOG1146|consensus 1406 82.27
>KOG0488|consensus Back     alignment and domain information 
Probab=99.47  E-value=9.4e-14  Score=91.23  Aligned_cols=54  Identities=35%  Similarity=0.540  Sum_probs=49.7

Q ss_pred             CCCccccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107          22 GVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ   75 (76)
Q Consensus        22 ~~~~~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk   75 (76)
                      .....++|+|+.||.||..|+.+||+.|++..|++..+|.+||..|||++.|||
T Consensus       164 ~~~~~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVK  217 (309)
T KOG0488|consen  164 YQRSTPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVK  217 (309)
T ss_pred             cccCCCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHH
Confidence            344456888899999999999999999999999999999999999999999997

>KOG0484|consensus Back     alignment and domain information
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>KOG2251|consensus Back     alignment and domain information
>KOG0842|consensus Back     alignment and domain information
>KOG0850|consensus Back     alignment and domain information
>KOG0843|consensus Back     alignment and domain information
>KOG0489|consensus Back     alignment and domain information
>KOG0493|consensus Back     alignment and domain information
>KOG0487|consensus Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>KOG0485|consensus Back     alignment and domain information
>KOG0494|consensus Back     alignment and domain information
>KOG0486|consensus Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>KOG0492|consensus Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>KOG0844|consensus Back     alignment and domain information
>KOG0848|consensus Back     alignment and domain information
>KOG0491|consensus Back     alignment and domain information
>KOG0490|consensus Back     alignment and domain information
>KOG0849|consensus Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>KOG3802|consensus Back     alignment and domain information
>KOG0847|consensus Back     alignment and domain information
>KOG0483|consensus Back     alignment and domain information
>KOG2252|consensus Back     alignment and domain information
>KOG4577|consensus Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>KOG0774|consensus Back     alignment and domain information
>KOG0490|consensus Back     alignment and domain information
>KOG0775|consensus Back     alignment and domain information
>KOG1168|consensus Back     alignment and domain information
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif Back     alignment and domain information
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information
>COG3413 Predicted DNA binding protein [General function prediction only] Back     alignment and domain information
>KOG1146|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query76
3a01_B67 Crystal Structure Of Aristaless And Clawless Homeod 1e-16
2m0c_A75 Solution Nmr Structure Of Homeobox Domain Of Human 1e-15
1fjl_A81 Homeodomain From The Drosophila Paired Protein Boun 2e-15
3cmy_A61 Structure Of A Homeodomain In Complex With Dna Leng 1e-14
3lnq_A58 Structure Of Aristaless Homeodomain In Complex With 5e-14
3a02_A60 Crystal Structure Of Aristaless Homeodomain Length 1e-12
2l7m_P68 Solution Structure Of The Pitx2 Homeodomain R24h Mu 3e-11
2dms_A80 Solution Structure Of The Homeobox Domain Of Homeob 1e-10
2cue_A80 Solution Structure Of The Homeobox Domain Of The Hu 2e-10
2l7f_P68 Solution Structure Of The Pitx2 Homeodomain Length 3e-10
2dmu_A70 Solution Structure Of The Homeobox Domain Of Homeob 6e-08
1ig7_A58 Msx-1 HomeodomainDNA COMPLEX STRUCTURE Length = 58 8e-04
2m34_A71 Nmr Structure Of The Homeodomain Transcription Fact 8e-04
>pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless Homeodomains Bo Length = 67 Back     alignment and structure 
Iteration: 1

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 44/49 (89%)
Query: 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
          KRKQRR RTTFTS QL+ELE+AF  THYPD++TREE+AMKI LTEAR+Q
Sbjct: 3  KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 51
>pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4, Northeast Structural Genomics Consortium (Nesg) Target Hr4490c Length = 75 Back     alignment and structure
>pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein Bound To A Dna Oligonucleotide Length = 81 Back     alignment and structure
>pdb|3CMY|A Chain A, Structure Of A Homeodomain In Complex With Dna Length = 61 Back     alignment and structure
>pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna Length = 58 Back     alignment and structure
>pdb|3A02|A Chain A, Crystal Structure Of Aristaless Homeodomain Length = 60 Back     alignment and structure
>pdb|2L7M|P Chain P, Solution Structure Of The Pitx2 Homeodomain R24h Mutant Length = 68 Back     alignment and structure
>pdb|2DMS|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox Protein Otx2 Length = 80 Back     alignment and structure
>pdb|2CUE|A Chain A, Solution Structure Of The Homeobox Domain Of The Human Paired Box Protein Pax-6 Length = 80 Back     alignment and structure
>pdb|2L7F|P Chain P, Solution Structure Of The Pitx2 Homeodomain Length = 68 Back     alignment and structure
>pdb|2DMU|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox Protein Goosecoid Length = 70 Back     alignment and structure
>pdb|1IG7|A Chain A, Msx-1 HomeodomainDNA COMPLEX STRUCTURE Length = 58 Back     alignment and structure
>pdb|2M34|A Chain A, Nmr Structure Of The Homeodomain Transcription Factor Gbx1 From Homo Sapiens Length = 71 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query76
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 4e-31
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 2e-30
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 8e-30
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 9e-30
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 4e-28
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 8e-28
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 3e-26
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 6e-26
3a02_A60 Homeobox protein aristaless; homeodomain, developm 1e-25
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 2e-23
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 8e-23
1uhs_A72 HOP, homeodomain only protein; structural genomics 4e-21
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 2e-20
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 2e-20
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 5e-19
3d1n_I151 POU domain, class 6, transcription factor 1; prote 7e-17
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 9e-17
1lfb_A99 Liver transcription factor (LFB1); transcription r 3e-15
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 6e-15
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 1e-14
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 1e-13
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 3e-13
2xsd_C164 POU domain, class 3, transcription factor 1; trans 3e-13
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 3e-13
1e3o_C160 Octamer-binding transcription factor 1; transcript 1e-12
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 4e-12
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 3e-11
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 4e-11
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 5e-11
3a01_A93 Homeodomain-containing protein; homeodomain, prote 6e-11
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 9e-11
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 1e-10
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 2e-10
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 3e-10
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 3e-10
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 3e-10
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 4e-10
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 1e-09
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 4e-09
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 6e-09
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 9e-09
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 2e-08
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 5e-08
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 1e-07
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 2e-07
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 2e-07
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 7e-07
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 2e-06
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 4e-06
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 5e-06
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 1e-05
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 1e-05
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 1e-05
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 2e-05
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 5e-05
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 2e-04
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Length = 81 Back     alignment and structure
 Score =  102 bits (257), Expect = 4e-31
 Identities = 36/55 (65%), Positives = 45/55 (81%)

Query: 21 EGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
          E  +  KRKQRR RTTF+++QL ELERAF+ T YPDIYTREE+A + +LTEAR+Q
Sbjct: 9  EPGIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 63
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 80 Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Length = 80 Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Length = 68 Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Length = 67 Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Length = 60 Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 66 Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 80 Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 95 Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Length = 151 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Length = 99 Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Length = 194 Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Length = 221 Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Length = 155 Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Length = 146 Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Length = 164 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Length = 160 Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Length = 84 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61 Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Length = 93 Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Length = 77 Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Length = 58 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Length = 58 Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Length = 62 Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 68 Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Length = 61 Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Length = 56 Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Length = 68 Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Length = 97 Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Length = 63 Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Length = 88 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Length = 81 Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Length = 68 Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Length = 73 Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70 Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Length = 77 Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query76
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 99.54
1wh5_A80 ZF-HD homeobox family protein; structural genomics 99.54
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 99.53
1wh7_A80 ZF-HD homeobox family protein; homeobox domain, st 99.51
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 99.49
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 99.48
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 99.47
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 99.47
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.47
3a01_A93 Homeodomain-containing protein; homeodomain, prote 99.47
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 99.47
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 99.46
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 99.45
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 99.44
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 99.44
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 99.44
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 99.44
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.44
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 99.44
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 99.44
2m0c_A75 Homeobox protein aristaless-like 4; structural gen 99.44
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 99.44
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 99.43
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 99.43
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 99.43
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 99.42
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 99.41
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 99.41
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 99.41
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 99.4
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 99.39
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 99.38
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 99.38
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 99.37
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 99.37
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 99.36
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 99.36
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 99.36
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 99.34
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 99.33
2ly9_A74 Zinc fingers and homeoboxes protein 1; structural 99.32
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 99.31
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 99.31
3a02_A60 Homeobox protein aristaless; homeodomain, developm 99.31
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 99.3
1uhs_A72 HOP, homeodomain only protein; structural genomics 99.28
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 99.27
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 99.27
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 99.26
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 99.25
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 99.25
1lfb_A99 Liver transcription factor (LFB1); transcription r 99.24
1e3o_C160 Octamer-binding transcription factor 1; transcript 99.24
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 99.23
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 99.22
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 99.21
3d1n_I151 POU domain, class 6, transcription factor 1; prote 99.21
2xsd_C164 POU domain, class 3, transcription factor 1; trans 99.21
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 99.2
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 99.2
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 99.19
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 99.19
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 99.19
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 99.14
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 99.13
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 99.11
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 99.08
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 99.07
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 99.06
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 99.05
2e19_A64 Transcription factor 8; homeobox domain, structura 99.0
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 98.98
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 98.82
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 98.77
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 98.47
2da7_A71 Zinc finger homeobox protein 1B; homeobox domain, 98.31
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 98.23
2rgt_A169 Fusion of LIM/homeobox protein LHX3, linker, INSU 86.18
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Back     alignment and structure
Probab=99.54  E-value=5.3e-14  Score=75.98  Aligned_cols=51  Identities=27%  Similarity=0.414  Sum_probs=47.4

Q ss_pred             ccccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107          25 TEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ   75 (76)
Q Consensus        25 ~~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk   75 (76)
                      ....+.++.||.|+..|+..||..|..++||+...+..||..|||++.+|+
T Consensus        17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~   67 (84)
T 2kt0_A           17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK   67 (84)
T ss_dssp             CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHH
Confidence            345667889999999999999999999999999999999999999999986
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Back     alignment and structure
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 76
d1pufa_77 a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m 3e-16
d2cuea168 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H 2e-14
d9anta_56 a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila 1e-13
d1fjla_65 a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila 1e-13
d2craa158 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( 2e-13
d2e1oa157 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo 6e-13
d2cufa182 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HM 6e-13
d1p7ia_53 a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel 1e-12
d1yz8p160 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo 2e-12
d1b72a_88 a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo 2e-12
d1bw5a_66 a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { 2e-12
d1s7ea150 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M 4e-12
d1vnda_77 a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophi 6e-12
d1jgga_57 a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( 1e-11
d1le8a_53 a.4.1.1 (A:) Mating type protein A1 Homeodomain {B 2e-11
d1ig7a_58 a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculu 2e-11
d1zq3p167 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fl 3e-11
d1ocpa_67 a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus 8e-11
d1au7a158 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra 1e-10
d1ftta_68 a.4.1.1 (A:) Thyroid transcription factor 1 homeod 4e-10
d1uhsa_72 a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse 5e-10
d1lfba_78 a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HN 1e-09
d1wh7a_80 a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha 2e-09
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 2e-09
d1x2ma152 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 3e-09
d1wi3a_71 a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom 3e-09
d1pufb_73 a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 5e-09
d2cqxa159 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 1e-08
d1e3oc157 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human ( 2e-08
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 4e-08
d2ecba176 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote 5e-06
d2ecca176 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein H 1e-04
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein hox-a9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.1 bits (156), Expect = 3e-16
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 28 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
          R  R+ R  +T  Q  ELE+ F    Y     R E+A  ++LTE +V+
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 77 Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 58 Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67 Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Length = 78 Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 Back     information, alignment and structure
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query76
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 99.55
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 99.54
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 99.54
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 99.53
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 99.53
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 99.52
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 99.5
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 99.5
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 99.5
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 99.5
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 99.49
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 99.45
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 99.44
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 99.44
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 99.43
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 99.42
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 99.4
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 99.4
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 99.36
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.35
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 99.34
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 99.33
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 99.29
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 99.23
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.11
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 99.08
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 99.06
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 99.05
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 98.91
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 98.81
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 98.77
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 98.71
d1ijwc_47 HIN recombinase (DNA-binding domain) {Synthetic} 83.81
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Msx-1 homeodomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=4.4e-15  Score=74.33  Aligned_cols=45  Identities=44%  Similarity=0.672  Sum_probs=43.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107          31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ   75 (76)
Q Consensus        31 rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk   75 (76)
                      |+.|+.||++|+..||..|+.++||+...+.+||..|||++.+|+
T Consensus         1 rr~Rt~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~   45 (58)
T d1ig7a_           1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK   45 (58)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhhee
Confidence            467999999999999999999999999999999999999999986
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Back     information, alignment and structure