Psyllid ID: psy7269

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGHKIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTVDVIVMSSRTGAYAVTSEFKICRYKLMLFFFIFKTASMIV
cHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHccHHHHcccccccccEEEEEcccccccccHHHHHHHHHHcccccccccEEEcccEEcccccccEEEEccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccc
cHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccEEccEEEEEEccHHHHccHHHHHcccccccccHHHHcccccccEEEEEEcccHEEEEEEHHHHHHHHccccccccccEEEcEEEEEcccccccccccEEccHHHHHccccccccccccccccHHccccHHHHHHHHccEEcccccccHHHEEHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcc
iedklqswVSETSDQWSSNARVICKAWLkdglkprcitrdlkwgipvplpgfenkvFYVWFDAPIGYMSLTQSYCGQYEAwwksapqskITLYQfmakdnvpfhsimfpatlvaagdqyTKVNHIMatghkigtpaplfRKIEQAQVDEWKlkyggqqskessnnkketkqaeITFSSVEELEAAVATQGALLGTVDVIVMSsrtgayavtsEFKICRYKLMLFFFIFKTASMIV
iedklqswvsetsdqwssnaRVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGHKIGTPAPLFRKIEQAQVDEWKLKYggqqskessnnkketkqAEITFSSVEELEAAVATQGALLGTVDVIVMSSRTGAYAVTSEFKICRYKLMLFFFIFKTASMIV
IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGHKIGTPAPLFRKIEQAQVDEWKLKYGGqqskessnnkkeTKQAEITFSSVEELEAAVATQGALLGTVDVIVMSSRTGAYAVTSEFKICRYKLMLFFFIFKTASMIV
***************WSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGHKIGTPAPLFRKIEQAQVDEWKLKY************************VEELEAAVATQGALLGTVDVIVMSSRTGAYAVTSEFKICRYKLMLFFFIFKTA****
IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGHKIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTVDVIVMSSRTGAYAVTSEFKICRYKLMLFFFIFKTASMIV
*****************SNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGHKIGTPAPLFRKIEQAQVDEWKLKYG*****************EITFSSVEELEAAVATQGALLGTVDVIVMSSRTGAYAVTSEFKICRYKLMLFFFIFKTASMIV
IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGHKIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTVDVIVMSSRTGAYAVTSEFKICRYKLMLFFFIFKTASMIV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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IEDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGHKIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELEAAVATQGALLGTVDVIVMSSRTGAYAVTSEFKICRYKLMLFFFIFKTASMIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
FB|FBgn0034401 1022 CG15100 [Drosophila melanogast 0.540 0.124 0.598 2.2e-51
UNIPROTKB|A6NC17 635 MARS "Methionine--tRNA ligase, 0.536 0.198 0.592 3.3e-49
MGI|MGI:1345633 902 Mars "methionine-tRNA syntheta 0.536 0.139 0.6 9.3e-48
UNIPROTKB|F6XD28 898 MARS "Uncharacterized protein" 0.536 0.140 0.592 1.5e-47
UNIPROTKB|E2QZ06 900 MARS "Uncharacterized protein" 0.536 0.14 0.592 1.5e-47
UNIPROTKB|P56192 900 MARS "Methionine--tRNA ligase, 0.536 0.14 0.592 2.5e-47
UNIPROTKB|I3LCC2 893 LOC100516610 "Uncharacterized 0.536 0.141 0.584 3e-47
ZFIN|ZDB-GENE-030219-83 951 mars "methionine-tRNA syntheta 0.536 0.132 0.592 7.2e-47
UNIPROTKB|F1MDW1 898 MARS "Methionine--tRNA ligase, 0.523 0.136 0.598 8.3e-47
UNIPROTKB|Q2T9L8 898 MARS "Methionine--tRNA ligase, 0.523 0.136 0.598 8.3e-47
FB|FBgn0034401 CG15100 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 450 (163.5 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
 Identities = 76/127 (59%), Positives = 100/127 (78%)

Query:     2 EDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWF 61
             E +L+ WV ++   W+ NA+VI +AWLK+GLKPRCITRDLKWGIPVP  GFE KVFYVWF
Sbjct:   450 EPQLKEWVDKSEGGWTHNAKVITRAWLKEGLKPRCITRDLKWGIPVPHEGFEKKVFYVWF 509

Query:    62 DAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTK 121
             DAP GY+S+T+ Y  +Y+ WW+ A  + + L+QFMAKDNVPFHS+++P+ L+A    +T 
Sbjct:   510 DAPFGYVSMTKRYTKEYQQWWQPAKGTDVELFQFMAKDNVPFHSVVWPSVLLAINKGHTL 569

Query:   122 VNHIMAT 128
             V+HIMAT
Sbjct:   570 VSHIMAT 576
GO:0004825 "methionine-tRNA ligase activity" evidence=ISS
GO:0006431 "methionyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|A6NC17 MARS "Methionine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1345633 Mars "methionine-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F6XD28 MARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ06 MARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P56192 MARS "Methionine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LCC2 LOC100516610 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030219-83 mars "methionine-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MDW1 MARS "Methionine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2T9L8 MARS "Methionine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
PLN02610 801 PLN02610, PLN02610, probable methionyl-tRNA synthe 2e-58
PRK12268 556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 3e-56
pfam09334388 pfam09334, tRNA-synt_1g, tRNA synthetases class I 6e-50
cd00814319 cd00814, MetRS_core, catalytic core domain of meth 7e-50
PRK00133 673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 1e-46
COG0143 558 COG0143, MetG, Methionyl-tRNA synthetase [Translat 3e-39
TIGR00398 530 TIGR00398, metG, methionyl-tRNA synthetase 3e-33
PRK12267 648 PRK12267, PRK12267, methionyl-tRNA synthetase; Rev 9e-14
PRK11893 511 PRK11893, PRK11893, methionyl-tRNA synthetase; Rev 1e-11
cd00668312 cd00668, Ile_Leu_Val_MetRS_core, catalytic core do 4e-11
PLN02224 616 PLN02224, PLN02224, methionine-tRNA ligase 5e-09
PLN02610 801 PLN02610, PLN02610, probable methionyl-tRNA synthe 2e-05
PRK12268556 PRK12268, PRK12268, methionyl-tRNA synthetase; Rev 2e-04
PRK00133673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 9e-04
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase Back     alignment and domain information 
 Score =  197 bits (502), Expect = 2e-58
 Identities = 74/130 (56%), Positives = 99/130 (76%), Gaps = 4/130 (3%)

Query: 1   IEDKLQSWVSETSDQ--WSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFY 58
           ++DKL  +++ETS    WS NA     AWL+DGLKPRCITRDLKWG+PVPL  +++KVFY
Sbjct: 212 LKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLEKYKDKVFY 271

Query: 59  VWFDAPIGYMSLTQSYCGQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ 118
           VWFDAPIGY+S+T  Y  ++E WWK+ P++ + LYQFM KDNVPFH++MFP+TL+  G+ 
Sbjct: 272 VWFDAPIGYVSITACYTPEWEKWWKN-PEN-VELYQFMGKDNVPFHTVMFPSTLLGTGEN 329

Query: 119 YTKVNHIMAT 128
           +T +  I  T
Sbjct: 330 WTMMKTISVT 339

Length = 801
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) Back     alignment and domain information
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase Back     alignment and domain information
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 235
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 100.0
PLN02610 801 probable methionyl-tRNA synthetase 100.0
KOG0436|consensus 578 100.0
PRK12267 648 methionyl-tRNA synthetase; Reviewed 100.0
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 100.0
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 100.0
PLN02224 616 methionine-tRNA ligase 100.0
KOG1247|consensus 567 100.0
TIGR00398 530 metG methionyl-tRNA synthetase. The methionyl-tRNA 100.0
PRK12268 556 methionyl-tRNA synthetase; Reviewed 100.0
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 100.0
PRK11893 511 methionyl-tRNA synthetase; Reviewed 100.0
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 100.0
TIGR00422 861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 99.97
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 99.97
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 99.97
PLN02943 958 aminoacyl-tRNA ligase 99.96
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 99.96
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 99.95
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 99.95
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 99.95
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 99.95
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 99.95
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 99.94
PLN02882 1159 aminoacyl-tRNA ligase 99.94
PRK13208 800 valS valyl-tRNA synthetase; Reviewed 99.94
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 99.94
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 99.93
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 99.92
PLN02381 1066 valyl-tRNA synthetase 99.91
PLN02843 974 isoleucyl-tRNA synthetase 99.91
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 99.91
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 99.9
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 99.89
PLN02959 1084 aminoacyl-tRNA ligase 99.85
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 99.84
KOG0432|consensus 995 99.8
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 99.77
KOG0433|consensus 937 99.7
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 99.67
PLN02563 963 aminoacyl-tRNA ligase 99.65
KOG0434|consensus 1070 99.47
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 99.07
KOG0435|consensus 876 98.98
PTZ00399 651 cysteinyl-tRNA-synthetase; Provisional 98.82
PRK14536 490 cysS cysteinyl-tRNA synthetase; Provisional 98.15
PRK14534 481 cysS cysteinyl-tRNA synthetase; Provisional 98.04
TIGR00435 465 cysS cysteinyl-tRNA synthetase. This model finds t 97.7
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 97.59
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 97.54
KOG0437|consensus 1080 97.33
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 96.87
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 95.94
PRK12418384 cysteinyl-tRNA synthetase; Provisional 95.79
cd00674353 LysRS_core_class_I catalytic core domain of class 95.12
PLN02946 557 cysteine-tRNA ligase 94.59
PRK00750 510 lysK lysyl-tRNA synthetase; Reviewed 94.53
KOG1247|consensus567 93.88
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 93.86
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 89.18
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 88.57
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 85.15
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 83.81
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 82.36
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=8.2e-52  Score=397.22  Aligned_cols=198  Identities=31%  Similarity=0.528  Sum_probs=182.0

Q ss_pred             ChHHHHHHHHhCCCC-CChhHHHHHHHHHhcCCCCcccee-ccCCccccCCCCCCCCeEEEeccCccchhhcccccc---
Q psy7269           1 IEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITR-DLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSYC---   75 (235)
Q Consensus         1 ~~~~L~e~~~~~~~~-~p~~~~~~~~~~l~~gL~Dw~ISR-~~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~~---   75 (235)
                      |+++|++|+++++.+ ||++.++.+.+||++||.|||||| +.+||||||.+  ++||+||||||++||+|++..+.   
T Consensus       197 ~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~--p~kv~YVWfDAligYisa~~~~~~~~  274 (558)
T COG0143         197 FQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGD--PGKVIYVWFDALIGYISALGELAEIG  274 (558)
T ss_pred             hHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCCC--CCCEEEEeeccHHHHHHHhcchhccC
Confidence            689999999998754 999999999999999999999999 99999999944  99999999999999999997764   


Q ss_pred             --hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccCCCCChHHHHh
Q psy7269          76 --GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIGTPAPLFRKIE  143 (235)
Q Consensus        76 --~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiGn~~~~~~~i~  143 (235)
                        ++|.+||++  + ++++||||||||++||||+|||||++.|.+  +|+++++|||          |.||++.+.+.++
T Consensus       275 ~~~~~~~~W~~--~-~~e~vhfIGKDii~FHav~wPamL~~~~~~--lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~  349 (558)
T COG0143         275 DDEDFKKFWPA--D-DTELVHFIGKDIIRFHAVYWPAMLMAAGLP--LPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLE  349 (558)
T ss_pred             ChHHHHhhCCC--C-CceEEEEeccccCcchhhHHHHHHHhCCCC--CCCEEEeeeeEEECCccccccCCcEEeHHHHHH
Confidence              379999994  4 889999999999999999999999999976  9999999998          4677777889999


Q ss_pred             hhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccccccc
Q psy7269         144 QAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYAVTSE  213 (235)
Q Consensus       144 ~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~~~~~  213 (235)
                      ++++|.|||        ++++..|+++|++||+++|.++.  +|+|++||+++|+++|+.|+-.|..|..+.
T Consensus       350 ~~~~D~lRY--------yL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~  413 (558)
T COG0143         350 QYGVDALRY--------YLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGA  413 (558)
T ss_pred             HcCchHhHH--------HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCcccc
Confidence            999999998        55788899999999999999976  999999999999999999999999998873

>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>KOG0436|consensus Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>KOG1247|consensus Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0432|consensus Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG0433|consensus Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>KOG0434|consensus Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0435|consensus Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG0437|consensus Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1247|consensus Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 5e-60
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 3e-04
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 4e-59
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 5e-08
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 5e-15
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 1e-14
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 3e-14
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 3e-14
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 5e-14
3tun_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 2e-09
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
 Score =  197 bits (502), Expect = 5e-60
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 2   EDKLQSWVSETSDQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFENKVFYVWF 61
            + LQ+W    S           + W + GL+   I+RD  +     +P    K FYVW 
Sbjct: 211 SEMLQAWTR--SGALQEQVANKMQEWFESGLQQWDISRDAPY-FGFEIPNAPGKYFYVWL 267

Query: 62  DAPIGYMSLTQSYCGQ------YEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAA 115
           DAPIG M   ++ C +      ++ +WK    ++  LY F+ KD V F S+ +PA L  +
Sbjct: 268 DAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAE--LYHFIGKDIVYFLSLFWPAMLEGS 325

Query: 116 GDQYTKVNHIMATGH 130
              + K +++   G+
Sbjct: 326 N--FRKPSNLFVHGY 338
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Back     alignment and structure
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 100.0
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 100.0
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 100.0
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 100.0
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 100.0
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 100.0
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 99.98
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 99.97
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 99.94
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 99.93
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 99.92
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 99.92
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 99.9
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 99.76
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 99.75
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 99.52
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 99.31
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 98.9
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 97.96
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 97.9
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 97.64
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 97.11
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 96.89
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
Probab=100.00  E-value=2.4e-41  Score=326.03  Aligned_cols=191  Identities=19%  Similarity=0.313  Sum_probs=166.9

Q ss_pred             ChHHHHHHHHhCCCC-CChhHHHHHHHHHhcCCCCcccee----ccCCccccCCCCCCCCeEEEeccCccchhhccccc-
Q psy7269           1 IEDKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITR----DLKWGIPVPLPGFENKVFYVWFDAPIGYMSLTQSY-   74 (235)
Q Consensus         1 ~~~~L~e~~~~~~~~-~p~~~~~~~~~~l~~gL~Dw~ISR----~~~WGIpvP~~~~~~~viyVWfDa~~~yls~~~~~-   74 (235)
                      |+++|.+|+++++.+ +|++.++++.+||++||+||||||    +++||||||.+  +++|+||||||+++|+|++ +| 
T Consensus       198 ~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~--~~~v~yVWfDa~~~y~s~~-~~~  274 (564)
T 3kfl_A          198 FRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGD--ERHCIYVWLDALFNYYTGA-LTR  274 (564)
T ss_dssp             GHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHH-HEE
T ss_pred             HHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCC--CCCEEEEeccCcHHHHHHh-Ccc
Confidence            578999999988765 588999999999998999999999    89999999965  8999999999999999986 55 


Q ss_pred             chh---------h--hhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeecccc----------ccC
Q psy7269          75 CGQ---------Y--EAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMATGH----------KIG  133 (235)
Q Consensus        75 ~~~---------~--~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~~G~----------kiG  133 (235)
                      +++         +  +++||++       +|++||||++||+++|||+|++.|.  .+|++|++|||          |.|
T Consensus       275 ~~~~~~~~~~~~~~~~~~wp~d-------v~~~GkDii~FH~~~wpa~L~a~g~--~~~~~v~~hg~v~~~G~KMSKS~G  345 (564)
T 3kfl_A          275 VATDGTETLDEDHHALNRWPAD-------VHVVGKDILKFHAIYWPAFLMSAEL--PLPERLVSHGWWTKDHKKISKSLG  345 (564)
T ss_dssp             ECTTSCEEECSSSTTTTCCSCS-------EEEEEGGGHHHHHTHHHHHHHHTTC--CCCSCEEEECCEEETTEECCTTTT
T ss_pred             ccccccccchhcchhhhcCccc-------eEEEeecccchHHHHHHHHHHhCCC--CCCcEEEEcccEeeCCccccccCC
Confidence            532         7  8899953       9999999999999999999999985  48999999998          578


Q ss_pred             CCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHHHH--HHHHHhhhhHhhhhhhhhcccccccccc
Q psy7269         134 TPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEELE--AAVATQGALLGTVDVIVMSSRTGAYAVT  211 (235)
Q Consensus       134 n~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~~~--~lv~~~GNlV~R~~~~~~~~~~~~~~~~  211 (235)
                      |++.|.+.|+++|+|++|+++        ++..|.++|.+|+++.+++..  ++++.+||+++|+++++. +-.|..|..
T Consensus       346 NvV~p~d~i~~~G~DalR~~l--------l~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~-~~~g~~p~~  416 (564)
T 3kfl_A          346 NAFDPVEKAKEFGIDALKYFL--------MRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKI-NVNGMWPEP  416 (564)
T ss_dssp             CCCCHHHHHHHHCHHHHHHHH--------HHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTT-STTSBCCCC
T ss_pred             CCCCHHHHHHHcCcHHHHHHH--------HHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcCCCC
Confidence            999999999999999999844        444678899999999998853  799999999999999987 555666654


Q ss_pred             c
Q psy7269         212 S  212 (235)
Q Consensus       212 ~  212 (235)
                      +
T Consensus       417 ~  417 (564)
T 3kfl_A          417 A  417 (564)
T ss_dssp             C
T ss_pred             C
Confidence            3
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 235
d1rqga2361 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe 2e-08
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 15/132 (11%)

Query: 14  DQWSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPGFE--NKVFYVWFDAPIGYMSLT 71
             W  N + +  +W+++GL+ R ITRDL WGIPVPL   +   KV YVWF+APIGY+S+T
Sbjct: 171 QPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISIT 230

Query: 72  QSYCGQYEAW-----WKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQ-------- 118
             +  +         +      +  +  F+ KDN+PFH+I +PA L+A G          
Sbjct: 231 IEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAE 290

Query: 119 YTKVNHIMATGH 130
           +     I A  +
Sbjct: 291 WNLPYDIPANEY 302

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.9
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.89
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 99.87
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.86
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.84
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.61
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 98.95
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 98.68
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 97.66
d2d5ba1 152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 95.84
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1e-24  Score=198.34  Aligned_cols=161  Identities=13%  Similarity=0.188  Sum_probs=130.0

Q ss_pred             HHHHHHHHhCCCC-CChhHHHHHHHHHhcCCCCccceeccCCccccCCCC------------------------------
Q psy7269           3 DKLQSWVSETSDQ-WSSNARVICKAWLKDGLKPRCITRDLKWGIPVPLPG------------------------------   51 (235)
Q Consensus         3 ~~L~e~~~~~~~~-~p~~~~~~~~~~l~~gL~Dw~ISR~~~WGIpvP~~~------------------------------   51 (235)
                      +.+..+.+..... .|++.+.....|++ ++.||||||++.||+|+|...                              
T Consensus       215 ~~~~~~~~~~~~~~~pe~~~~~~~~~~~-~l~d~~isr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (425)
T d1ivsa4         215 EEVLKGLRRGDIAFVPERWKKVNMDWLE-NVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRL  293 (425)
T ss_dssp             HHHHHHHHHTCCEESSSTHHHHHHHHHH-TCCCEECEECCSSSCCCCCEEETTTCCEECCCGGGTTCCCCSCTTTCCSCE
T ss_pred             ccchhhhhcCCcceeccccceeeehhhh-hcCcceeecccccCCccceeeccCcceeecCccccccccccccccccCccc
Confidence            4566666666543 57788889999996 799999999999999999610                              


Q ss_pred             -CCCCeEEEeccCccchhhcccccc---hhhhhhcCCCCCCCceeEEEeecCCcchhhhHHHHHHHHhCCCcccceeeec
Q psy7269          52 -FENKVFYVWFDAPIGYMSLTQSYC---GQYEAWWKSAPQSKITLYQFMAKDNVPFHSIMFPATLVAAGDQYTKVNHIMA  127 (235)
Q Consensus        52 -~~~~viyVWfDa~~~yls~~~~~~---~~~~~~W~~~~~~~~~~v~fiGkDi~~Fhai~wpa~L~~~~~~~~~p~~i~~  127 (235)
                       ...+++++|+||+++|++.+ +++   +.+..+||.+       +|++|+||++||++.|||++++.+.. .+++++++
T Consensus       294 ~~~~~v~~~~~da~~~~~~~~-~~~~~~~~~~~~~p~d-------i~~~G~Di~~~h~~~~~a~~~~~~~~-~p~~~v~~  364 (425)
T d1ivsa4         294 KRDEDVFDTWFSSALWPLSTL-GWPEETEDLKAFYPGD-------VLVTGYDILFLWVSRMEVSGYHFMGE-RPFKTVLL  364 (425)
T ss_dssp             EECCCEECHHHHHTSCTTTTT-TTTTTCSHHHHSCSBS-------CEEEEGGGTTTTHHHHHHHHHHHSSS-CSBSEEEE
T ss_pred             cccCccccccccchhHHHHhh-CCCcChHHHhCCCCce-------EEEEEehhhhHHHHHHHHHHHHhcCC-CccceEEE
Confidence             24679999999999999876 444   3466777743       89999999999999999999988753 34588999


Q ss_pred             ccc-----------ccCCCCChHHHHhhhhhHHHHHHhcCCCccccccCcccccccCCCHhHHHH
Q psy7269         128 TGH-----------KIGTPAPLFRKIEQAQVDEWKLKYGGQQSKESSNNKKETKQAEITFSSVEE  181 (235)
Q Consensus       128 ~G~-----------kiGn~~~~~~~i~~~~~d~lR~~f~G~~~~~l~~~~pe~~D~~fs~~~~~~  181 (235)
                      |||           |.||++.+.+.|++||+|++|+        ++++.+|+++|++|+++.+++
T Consensus       365 hg~~L~~~G~KMSKS~Gn~I~~~e~l~~~g~D~lR~--------~L~~~~~~~~d~dF~~~~~~~  421 (425)
T d1ivsa4         365 HGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRF--------ALIYLATGGQDIRLDLRWLEM  421 (425)
T ss_dssp             ECCEECTTSSBCBTTTTBCCCHHHHHHHHCHHHHHH--------HHHHHCCTTCCEECCHHHHHH
T ss_pred             cceEECCCCCCcCCCCCCCcCHHHHHHHcCchHHHH--------HHHhcCCCCCCCccCHHHhhh
Confidence            886           4577777889999999999998        345677899999999998754
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure