Psyllid ID: psy7275

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWASCDRGNCNLPTDKVPKTKGRKTV
Secondary Structure (PSIPRED)
cccccccEEEEEEcccccccHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHcHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mydtgfpytELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVgfssvsgegTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREqhfalptpqplwascdrgncnlptdkvpktkgrktv
Flexible Loop (DISEMBL)
mydtgfpytELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQhfalptpqplwascdrgncnlptdkvpktkgrktv
Low Complexity Region (SEG)
MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWASCDRGNCNLPTDKVPKTKGRKTV
Disordered region (IsUnstruct)
****GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLR***********************LWASC*********************
Disordered Region (DISOPRED)
MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEA*SSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEW*****************************************************
Disordered Region (DISEMBL)
MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWASCDRGNCNLPTDKV*********
Disordered Region (DISPRO)
MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSE******************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWASCDRGNCNLPTDKVPKTKGRKTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
UNIPROTKB|B4DQM4	388	GPN1 "cDNA FLJ61157, highly si	0.766	0.296	0.504	5e-28
UNIPROTKB|Q9HCN4	374	GPN1 "GPN-loop GTPase 1" [Homo	0.766	0.307	0.504	5e-28
UNIPROTKB|H9GWN5	276	LOC607762 "Uncharacterized pro	0.766	0.416	0.495	1.7e-27
UNIPROTKB|J9PBE9	215	LOC607762 "Uncharacterized pro	0.766	0.534	0.495	1.7e-27
RGD|1589985	373	Gpn1 "GPN-loop GTPase 1" [Ratt	0.766	0.308	0.495	1.7e-27
ZFIN|ZDB-GENE-040801-154	400	zgc:100927 "zgc:100927" [Danio	0.766	0.287	0.504	2.2e-27
UNIPROTKB|F1NUD1	383	XAB1 "Uncharacterized protein"	0.766	0.300	0.495	2.8e-27
UNIPROTKB|A4FUD1	373	GPN1 "GPN-loop GTPase 1" [Bos	0.766	0.308	0.486	3.5e-27
UNIPROTKB|E2RNQ3	390	LOC475707 "Uncharacterized pro	0.766	0.294	0.486	3.5e-27
MGI|MGI:1921504	372	Gpn1 "GPN-loop GTPase 1" [Mus	0.766	0.309	0.486	3.5e-27

UNIPROTKB|B4DQM4 GPN1 "cDNA FLJ61157, highly similar to XPA-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 58/115 (50%), Positives = 83/115 (72%)

Query:     1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS 60
             +Y T  P+  ++   DI++H +A+EWMQDFE FQ+AL  +++Y+SNLTRSMSL LDEFYS
Sbjct:   191 LYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYS 250

Query:    61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQ 115
             +L+VVG S+V G G +EL   +  A E+YE+ YR E+ RL+   A +E  ++REQ
Sbjct:   251 SLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAESQQQREQ 305

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q9HCN4 GPN1 "GPN-loop GTPase 1" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 58/115 (50%), Positives = 83/115 (72%)

Query:     1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS 60
             +Y T  P+  ++   DI++H +A+EWMQDFE FQ+AL  +++Y+SNLTRSMSL LDEFYS
Sbjct:   177 LYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYS 236

Query:    61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQ 115
             +L+VVG S+V G G +EL   +  A E+YE+ YR E+ RL+   A +E  ++REQ
Sbjct:   237 SLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAESQQQREQ 291

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|H9GWN5 LOC607762 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 57/115 (49%), Positives = 82/115 (71%)

Query:     1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS 60
             +Y T  P+  ++   DI++H +A+EWMQDFE FQ+AL  +++Y+SNLTRSMSL LDEFYS
Sbjct:    80 LYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYS 139

Query:    61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQ 115
             +LKVVG S+V G G +EL   +  A E+YE+ YR E+ RL+   A ++   ++EQ
Sbjct:   140 SLKVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAQSQHQKEQ 194

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9PBE9 LOC607762 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 57/115 (49%), Positives = 82/115 (71%)

Query:     1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS 60
             +Y T  P+  ++   DI++H +A+EWMQDFE FQ+AL  +++Y+SNLTRSMSL LDEFYS
Sbjct:    72 LYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYS 131

Query:    61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQ 115
             +LKVVG S+V G G +EL   +  A E+YE+ YR E+ RL+   A ++   ++EQ
Sbjct:   132 SLKVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAQSQHQKEQ 186

GO:0000166 "nucleotide binding" evidence=IEA

RGD|1589985 Gpn1 "GPN-loop GTPase 1" [Rattus norvegicus (taxid:10116)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 57/115 (49%), Positives = 83/115 (72%)

Query:     1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS 60
             +Y T  P+  ++   DI++H +A+EWMQDFE FQ+AL  +++Y+SNLTRSMSL LDEFYS
Sbjct:   177 LYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYS 236

Query:    61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQ 115
             +L+VVG S+V G G +EL   +  A E+YE+ YR E+ RL+   A ++  E++EQ
Sbjct:   237 SLRVVGVSAVVGTGFDELCAQVTSAAEEYEREYRPEYERLKKSLASAQSNEQKEQ 291

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

ZFIN|ZDB-GENE-040801-154 zgc:100927 "zgc:100927" [Danio rerio (taxid:7955)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 58/115 (50%), Positives = 84/115 (73%)

Query:     1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS 60
             +Y T  P+  ++   DI++H +A+EWMQDFEVFQ+AL  ++SYISNLTRSMSL LDEFY+
Sbjct:   202 LYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEVFQDALNQETSYISNLTRSMSLVLDEFYT 261

Query:    61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQ 115
              L+VVG S+V+G G +EL   +  A ++YE  YR E+ RL  E A+++  +++EQ
Sbjct:   262 NLRVVGVSAVTGSGLDELFVQVADAAKEYETEYRPEYERLHRELAEAQSQKQQEQ 316

GO:0000166 "nucleotide binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NUD1 XAB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 57/115 (49%), Positives = 82/115 (71%)

Query:     1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS 60
             +Y T  P+  ++   DI++H +A+EWMQDFE FQ+AL  ++SY+SNLTRSMSL LDEFYS
Sbjct:   183 LYKTKLPFIVVMNKTDIIDHSFAVEWMQDFETFQDALNQETSYVSNLTRSMSLVLDEFYS 242

Query:    61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQ 115
             +LKVVG S+V G G ++    +  A E+YE+ YR E+ RLR    K++  +K++Q
Sbjct:   243 SLKVVGVSAVLGTGLDDFFVQLSKAVEEYEREYRPEYERLRKTLEKAQNKQKKDQ 297

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|A4FUD1 GPN1 "GPN-loop GTPase 1" [Bos taurus (taxid:9913)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 56/115 (48%), Positives = 83/115 (72%)

Query:     1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS 60
             +Y T  P+  ++   DI++H +A+EWMQDFE FQ+AL  +++Y+SNLTRSMSL LDEFYS
Sbjct:   177 LYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYS 236

Query:    61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQ 115
             +L+VVG S+V G G +EL   +  A E+YE+ YR E+ RL+   A ++  +++EQ
Sbjct:   237 SLRVVGVSAVLGTGLDELFVQVASATEEYEREYRPEYERLKKSLASAQSQQQKEQ 291

GO:0005737 "cytoplasm" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|E2RNQ3 LOC475707 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 56/115 (48%), Positives = 82/115 (71%)

Query:     1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS 60
             +Y T  P+  ++   DI++H +A+EWMQDFE FQ+AL  +++Y+SNLTRSMSL LDEFYS
Sbjct:   193 LYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYS 252

Query:    61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQ 115
             +L+VVG S+V G G +EL   +  A E+YE+ YR E+ RL+   A ++   ++EQ
Sbjct:   253 SLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAQSQHQKEQ 307

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

MGI|MGI:1921504 Gpn1 "GPN-loop GTPase 1" [Mus musculus (taxid:10090)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 56/115 (48%), Positives = 83/115 (72%)

Query:     1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS 60
             +Y T  P+  ++   DI++H +A+EWMQDFE FQ+AL  +++Y+SNLTRSMSL LDEFYS
Sbjct:   177 LYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYS 236

Query:    61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQ 115
             +L+VVG S+V G G +EL   +  A E+YE+ YR E+ RL+   A ++  +++EQ
Sbjct:   237 SLRVVGVSAVVGTGFDELCTQVTSAAEEYEREYRPEYERLKKSLANAQSNQQKEQ 291

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	150
pfam03029	235	pfam03029, ATP_bind_1, Conserved hypothetical ATP	8e-14
PRK13768	253	PRK13768, PRK13768, GTPase; Provisional	0.001

>gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein

 Score = 65.8 bits (161), Expect = 8e-14
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 1   MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS 60
           M   G P+   +   D+++ ++A++W  D +  Q  LE D S    L  ++  ALD FY 
Sbjct: 151 MLRLGLPFVVALNKFDLLSLEFALKWFTDPDDLQLLLELDPSK---LNEAIREALDLFYL 207

Query: 61  TLKVVGFSSVSGEGTEELLQLI 82
             + +  +  +GE  E+LL LI
Sbjct: 208 VPRFLPDARETGESMEDLLTLI 229

Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity. Length = 235

>gnl|CDD|237498 PRK13768, PRK13768, GTPase; Provisional

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 24  IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEEL---LQ 80
           ++W++D E   E L+ +      L+  +  AL+E    ++V+  S+ +GEG +EL   +Q
Sbjct: 184 LKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQ 243

Query: 81  LIKLAGEDYE 90
            +   GED  
Sbjct: 244 EVFCGGEDLT 253

Length = 253

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG1532|consensus	366		100.0
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.22
PRK13768	253	GTPase; Provisional	98.73
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.57
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.51
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.43
PRK00089	292	era GTPase Era; Reviewed	98.41
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.4
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.36
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.36
PRK14845	1049	translation initiation factor IF-2; Provisional	98.34
PRK04213	201	GTP-binding protein; Provisional	98.32
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.31
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.3
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.29
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.29
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.28
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.27
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.25
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.24
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.22
PRK12289	352	GTPase RsgA; Reviewed	98.21
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.21
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.21
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.21
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.2
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.2
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.2
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.18
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.17
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	98.16
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.15
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.15
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.14
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.14
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.13
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.13
PRK12298	390	obgE GTPase CgtA; Reviewed	98.12
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.12
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.12
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.11
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.11
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.1
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.09
cd00881	189	GTP_translation_factor GTP translation factor fami	98.09
PRK15494	339	era GTPase Era; Provisional	98.09
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.08
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.08
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.08
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.08
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.08
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.08
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.07
PRK04004	586	translation initiation factor IF-2; Validated	98.07
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.06
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.06
PRK00093	435	GTP-binding protein Der; Reviewed	98.05
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.05
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.05
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.04
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.04
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.04
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.04
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.03
COG1159	298	Era GTPase [General function prediction only]	98.03
PRK12296	500	obgE GTPase CgtA; Reviewed	98.03
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.03
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.02
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.01
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.01
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.01
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.01
PRK03003	472	GTP-binding protein Der; Reviewed	98.0
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.0
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	98.0
PRK12299	335	obgE GTPase CgtA; Reviewed	97.99
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	97.99
PRK12288	347	GTPase RsgA; Reviewed	97.99
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	97.99
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	97.99
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	97.99
PTZ00099	176	rab6; Provisional	97.98
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	97.98
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.98
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.98
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.98
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	97.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	97.98
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	97.98
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	97.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.97
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.97
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.96
PLN00223	181	ADP-ribosylation factor; Provisional	97.96
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	97.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	97.95
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	97.95
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	97.95
COG2262	411	HflX GTPases [General function prediction only]	97.95
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.94
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.94
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.94
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	97.93
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	97.93
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	97.92
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.92
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	97.91
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	97.91
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	97.9
PRK12297	424	obgE GTPase CgtA; Reviewed	97.9
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	97.9
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.9
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.9
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	97.9
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	97.9
PRK00098	298	GTPase RsgA; Reviewed	97.9
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	97.89
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	97.89
cd01896	233	DRG The developmentally regulated GTP-binding prot	97.89
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	97.89
PTZ00369	189	Ras-like protein; Provisional	97.89
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.89
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.88
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	97.87
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	97.87
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	97.87
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	97.87
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	97.87
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.86
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	97.86
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.86
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	97.84
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	97.84
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	97.83
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	97.83
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	97.82
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	97.82
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	97.82
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.81
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	97.81
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.8
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	97.8
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	97.8
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.76
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.76
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	97.76
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	97.75
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.75
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	97.75
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	97.75
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	97.75
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.75
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.75
PLN03110	216	Rab GTPase; Provisional	97.74
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	97.73
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	97.73
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	97.73
PTZ00133	182	ADP-ribosylation factor; Provisional	97.72
COG0536	369	Obg Predicted GTPase [General function prediction	97.72
KOG1489|consensus	366		97.71
COG1160	444	Predicted GTPases [General function prediction onl	97.71
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	97.71
PRK04000	411	translation initiation factor IF-2 subunit gamma;	97.7
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	97.7
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	97.69
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	97.69
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	97.69
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.67
KOG1145|consensus	683		97.65
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	97.64
PRK05306	787	infB translation initiation factor IF-2; Validated	97.62
PRK11058	426	GTPase HflX; Provisional	97.61
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.61
PLN03118	211	Rab family protein; Provisional	97.6
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	97.58
CHL00189	742	infB translation initiation factor 2; Provisional	97.55
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.54
PRK01889	356	GTPase RsgA; Reviewed	97.54
PLN03108	210	Rab family protein; Provisional	97.53
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	97.53
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	97.53
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.53
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	97.52
smart00178	184	SAR Sar1p-like members of the Ras-family of small	97.52
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	97.51
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	97.5
COG1160	444	Predicted GTPases [General function prediction onl	97.49
COG0486	454	ThdF Predicted GTPase [General function prediction	97.49
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	97.48
PRK13796	365	GTPase YqeH; Provisional	97.46
PRK03003	472	GTP-binding protein Der; Reviewed	97.45
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.43
PRK12736	394	elongation factor Tu; Reviewed	97.41
PRK05433	600	GTP-binding protein LepA; Provisional	97.38
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	97.35
KOG0462|consensus	650		97.34
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.34
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.34
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	97.33
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	97.28
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.27
PRK00093	435	GTP-binding protein Der; Reviewed	97.25
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	97.25
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	97.23
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	97.22
COG1162	301	Predicted GTPases [General function prediction onl	97.18
PRK09866	741	hypothetical protein; Provisional	97.18
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.16
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.15
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.12
COG0218	200	Predicted GTPase [General function prediction only	97.08
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	97.07
PRK12317	425	elongation factor 1-alpha; Reviewed	97.07
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.05
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	97.04
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.03
COG1163	365	DRG Predicted GTPase [General function prediction	97.02
PLN00043	447	elongation factor 1-alpha; Provisional	97.02
PTZ00141	446	elongation factor 1- alpha; Provisional	96.97
KOG1144|consensus	1064		96.95
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	96.93
PRK12735	396	elongation factor Tu; Reviewed	96.92
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	96.92
CHL00071	409	tufA elongation factor Tu	96.92
KOG0092|consensus	200		96.91
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	96.89
KOG1423|consensus	379		96.86
TIGR00485	394	EF-Tu translation elongation factor TU. This align	96.82
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	96.8
PRK00049	396	elongation factor Tu; Reviewed	96.79
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	96.74
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	96.68
PLN03127	447	Elongation factor Tu; Provisional	96.6
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	96.58
PLN03126	478	Elongation factor Tu; Provisional	96.53
PRK10218	607	GTP-binding protein; Provisional	96.49
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	96.43
COG3276	447	SelB Selenocysteine-specific translation elongatio	96.42
PRK09602	396	translation-associated GTPase; Reviewed	96.38
KOG0078|consensus	207		96.3
COG1161	322	Predicted GTPases [General function prediction onl	96.28
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	96.19
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.09
PRK12740	668	elongation factor G; Reviewed	95.96
KOG0461|consensus	522		95.83
KOG0094|consensus	221		95.76
cd04105	203	SR_beta Signal recognition particle receptor, beta	95.66
KOG0394|consensus	210		95.58
KOG0093|consensus	193		95.58
PRK13351	687	elongation factor G; Reviewed	95.54
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	95.51
KOG0076|consensus	197		95.49
KOG0395|consensus	196		95.39
COG2229	187	Predicted GTPase [General function prediction only	95.26
KOG0073|consensus	185		95.24
KOG0088|consensus	218		95.24
KOG0084|consensus	205		95.2
KOG0072|consensus	182		95.12
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	95.08
KOG1143|consensus	591		95.01
PRK00741	526	prfC peptide chain release factor 3; Provisional	94.9
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	94.65
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	94.44
COG1084	346	Predicted GTPase [General function prediction only	94.4
PRK12739	691	elongation factor G; Reviewed	94.35
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	94.16
PRK00007	693	elongation factor G; Reviewed	94.13
COG1100	219	GTPase SAR1 and related small G proteins [General	93.9
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	93.89
KOG4252|consensus	246		93.81
COG1217	603	TypA Predicted membrane GTPase involved in stress	93.46
KOG0086|consensus	214		93.28
KOG0098|consensus	216		93.17
KOG0458|consensus	603		93.06
KOG0087|consensus	222		92.66
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	92.53
KOG1490|consensus	620		92.49
TIGR00503	527	prfC peptide chain release factor 3. This translat	91.98
KOG0081|consensus	219		91.97
KOG0466|consensus	466		91.88
KOG1487|consensus	358		91.4
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	91.37
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	91.01
KOG1191|consensus	531		90.81
KOG1424|consensus	562		90.2
KOG0410|consensus	410		90.09
KOG0079|consensus	198		89.63
KOG0070|consensus	181		89.19
KOG0075|consensus	186		89.04
KOG0091|consensus	213		88.65
KOG3905|consensus	473		88.46
KOG1707|consensus	625		88.18
KOG0083|consensus	192		88.11
KOG0393|consensus	198		87.63
PRK07560	731	elongation factor EF-2; Reviewed	86.73
KOG0463|consensus	641		86.49
KOG0090|consensus	238		85.88
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	85.8
KOG2484|consensus	435		85.62
KOG0097|consensus	215		84.86
KOG2486|consensus	320		83.14
KOG2485|consensus	335		81.81
PF08438	109	MMR_HSR1_C: GTPase of unknown function C-terminal;	81.65
COG0050	394	TufB GTPases - translation elongation factors [Tra	80.59

>KOG1532|consensus

Probab=100.00  E-value=3.7e-39  Score=270.44  Aligned_cols=128  Identities=40%  Similarity=0.689  Sum_probs=125.4

Q ss_pred             CCCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhh-chhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHH
Q psy7275           1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEA-DSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus         1 lyk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~-e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~   79 (150)
                      |||+++|+|+||||+|+.+++|+.+||+|||+|++++.. +++|+++|++||||+|+|||+++++|+|||.||+|+++|+
T Consensus       177 lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~  256 (366)
T KOG1532|consen  177 LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFF  256 (366)
T ss_pred             HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHH
Confidence            799999999999999999999999999999999999996 8899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCcc
Q psy7275          80 QLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWAS  128 (150)
Q Consensus        80 ~~I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  128 (150)
                      .+|.+.++||.++|+|++||++++++..+++++++++++|+|||++.+-
T Consensus       257 ~av~~~vdEy~~~ykp~~Ek~k~~k~~~ee~~k~k~le~l~kdm~~~~~  305 (366)
T KOG1532|consen  257 TAVDESVDEYEEEYKPEYEKKKAEKRLAEEERKKKQLEKLMKDMHVSPL  305 (366)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHhccCcccc
Confidence            9999999999999999999999999999999999999999999998876

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.22  E-value=9.4e-12  Score=101.87  Aligned_cols=83  Identities=30%  Similarity=0.560  Sum_probs=67.6

Q ss_pred             CCCCCCCEEEeeecCCCCC--chhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHH
Q psy7275           1 MYDTGFPYTELVVGIDIVN--HKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEEL   78 (150)
Q Consensus         1 lyk~~lP~IlV~NKiDl~~--~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL   78 (150)
                      |+|+++|+|+|+||+|+.+  .++..+|+.|++.+...+..+   ...+.++++..+++|+..++++++|+.+++|+++|
T Consensus       152 ~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~---~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L  228 (238)
T PF03029_consen  152 MLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESD---YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEEL  228 (238)
T ss_dssp             HHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHH
T ss_pred             HhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHH---HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHH
Confidence            4678999999999999998  666789999999999888754   67899999999999987779999999999999999


Q ss_pred             HHHHHHHH
Q psy7275          79 LQLIKLAG   86 (150)
Q Consensus        79 ~~~I~e~~   86 (150)
                      +..|+++.
T Consensus       229 ~~~id~a~  236 (238)
T PF03029_consen  229 LAAIDKAN  236 (238)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999875

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK13768 GTPase; Provisional

Probab=98.73  E-value=6.5e-08  Score=79.54  Aligned_cols=84  Identities=24%  Similarity=0.367  Sum_probs=67.6

Q ss_pred             CCCCCEEEeeecCCCCCchhh---HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYA---IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~---~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~   79 (150)
                      +.++|+|+|+||+|+.+.+..   ..++.+++.+...+..+.++...+.+++...+..+....+++++||.+|+|+++|.
T Consensus       160 ~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~  239 (253)
T PRK13768        160 RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELY  239 (253)
T ss_pred             HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHH
Confidence            467899999999999876443   46777877777777655555677888888777887766799999999999999999


Q ss_pred             HHHHHHH
Q psy7275          80 QLIKLAG   86 (150)
Q Consensus        80 ~~I~e~~   86 (150)
                      +.|.+.+
T Consensus       240 ~~I~~~l  246 (253)
T PRK13768        240 AAIQEVF  246 (253)
T ss_pred             HHHHHHc
Confidence            9998765

>TIGR00436 era GTP-binding protein Era

Probab=98.57  E-value=7.5e-08  Score=79.17  Aligned_cols=106  Identities=10%  Similarity=0.057  Sum_probs=69.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.+...+++.+       +                  ...+...++++|||++|.|+++|++.|.
T Consensus       106 ~~~p~ilV~NK~Dl~~~~~~~~~~~~-------~------------------~~~~~~~~v~~iSA~~g~gi~~L~~~l~  160 (270)
T TIGR00436       106 LKRPVVLTRNKLDNKFKDKLLPLIDK-------Y------------------AILEDFKDIVPISALTGDNTSFLAAFIE  160 (270)
T ss_pred             cCCCEEEEEECeeCCCHHHHHHHHHH-------H------------------HhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence            56899999999999754332111110       0                  0112223899999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCcccCCCcc
Q psy7275          84 LAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWASCDRGNC  134 (150)
Q Consensus        84 e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  134 (150)
                      +.+.+-...|.++.---+.++....+--+++-+..+.+.++-+.+...-+.
T Consensus       161 ~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~  211 (270)
T TIGR00436       161 VHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERK  211 (270)
T ss_pred             HhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEE
Confidence            988776666666544444444444455566678888888766555544333

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.51  E-value=3.4e-07  Score=69.10  Aligned_cols=58  Identities=14%  Similarity=0.186  Sum_probs=42.6

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..+.|+|+|+||+|+.+.+...+|+..+.                         +. ....++.+||.+|.|+++|.+.+
T Consensus        27 ~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~-------------------------~~-~~~~ii~vSa~~~~gi~~L~~~i   80 (155)
T cd01849          27 EKGKKLILVLNKADLVPKEVLRKWLAYLR-------------------------HS-YPTIPFKISATNGQGIEKKESAF   80 (155)
T ss_pred             cCCCCEEEEEechhcCCHHHHHHHHHHHH-------------------------hh-CCceEEEEeccCCcChhhHHHHH
Confidence            45789999999999976654456652221                         11 13478999999999999999988


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+..
T Consensus        81 ~~~~   84 (155)
T cd01849          81 TKQT   84 (155)
T ss_pred             HHHh
Confidence            6553

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.43  E-value=8.6e-07  Score=65.00  Aligned_cols=58  Identities=9%  Similarity=0.037  Sum_probs=39.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+...  .+..+...+.                     .+ + +.+++.+||++|+|+++++..+.
T Consensus       104 ~~~piiiv~NK~D~~~~~~--~~~~~~~~~~---------------------~~-~-~~~~~~~Sa~~~~gi~~l~~~l~  158 (164)
T cd04139         104 DNVPLLLVGNKCDLEDKRQ--VSSEEAANLA---------------------RQ-W-GVPYVETSAKTRQNVEKAFYDLV  158 (164)
T ss_pred             CCCCEEEEEEccccccccc--cCHHHHHHHH---------------------HH-h-CCeEEEeeCCCCCCHHHHHHHHH
Confidence            4789999999999865211  0111111111                     11 1 36899999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       159 ~~~  161 (164)
T cd04139         159 REI  161 (164)
T ss_pred             HHH
Confidence            654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK00089 era GTPase Era; Reviewed

Probab=98.41  E-value=3.3e-07  Score=75.63  Aligned_cols=101  Identities=20%  Similarity=0.246  Sum_probs=68.9

Q ss_pred             CCCCEEEeeecCCCCCc-hhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNH-KYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~-~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+|+|+||+|+... +...+.+       +.+                  .+.+...+++++||.+|.|+++|++.+
T Consensus       112 ~~~pvilVlNKiDl~~~~~~l~~~~-------~~l------------------~~~~~~~~i~~iSA~~~~gv~~L~~~L  166 (292)
T PRK00089        112 VKTPVILVLNKIDLVKDKEELLPLL-------EEL------------------SELMDFAEIVPISALKGDNVDELLDVI  166 (292)
T ss_pred             cCCCEEEEEECCcCCCCHHHHHHHH-------HHH------------------HhhCCCCeEEEecCCCCCCHHHHHHHH
Confidence            36799999999999743 3221111       111                  112234689999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCccc
Q psy7275          83 KLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWASC  129 (150)
Q Consensus        83 ~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  129 (150)
                      .+.+.+-...|.++.-.-...+.-..+--+++-+..+.+.++-..+.
T Consensus       167 ~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v  213 (292)
T PRK00089        167 AKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAV  213 (292)
T ss_pred             HHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEE
Confidence            99887666666665444444555555555678888888887655443

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.40  E-value=7.4e-07  Score=81.76  Aligned_cols=88  Identities=19%  Similarity=0.307  Sum_probs=50.0

Q ss_pred             CCCCCEEEeeecCCCCCch---hhHHHhhcHHHHHHHHhhc-hhhhhhhHHHHH---------HHHHHhhcCCcEEEeec
Q psy7275           3 DTGFPYTELVVGIDIVNHK---YAIEWMQDFEVFQEALEAD-SSYISNLTRSMS---------LALDEFYSTLKVVGFSS   69 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~---~~~ewm~D~e~f~eal~~e-~~y~~~L~~sls---------l~l~efy~~l~vv~VSA   69 (150)
                      ..++|+|+|+||+|+.+.-   ....|++........+..+ ......+...+.         ..+.+|+...++|+|||
T Consensus       119 ~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA  198 (590)
T TIGR00491       119 MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISA  198 (590)
T ss_pred             HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeec
Confidence            3578999999999986421   1112333222222111110 001111111111         11236777789999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q psy7275          70 VSGEGTEELLQLIKLAGEDYE   90 (150)
Q Consensus        70 ~TGeGideL~~~I~e~~~ey~   90 (150)
                      +||+|+++|+..|....+.|.
T Consensus       199 ~tGeGideLl~~l~~l~~~~l  219 (590)
T TIGR00491       199 ITGEGIPELLTMLAGLAQQYL  219 (590)
T ss_pred             CCCCChhHHHHHHHHHHHHHh
Confidence            999999999998877655554

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.36  E-value=8.9e-07  Score=68.52  Aligned_cols=63  Identities=25%  Similarity=0.472  Sum_probs=40.0

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-h---cCCcEEEeecCCCCCHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-Y---STLKVVGFSSVSGEGTEEL   78 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y---~~l~vv~VSA~TGeGideL   78 (150)
                      ..++|+|+|+||+|+...++ .+..   +.++..+                 +.++ +   ...+++++||.+|.|+++|
T Consensus       120 ~~~~p~ivvlNK~D~~~~~~-~~~~---~~~~~~l-----------------~~~~~~~~~~~~~vi~~Sa~~g~gi~~L  178 (188)
T PF00009_consen  120 ELGIPIIVVLNKMDLIEKEL-EEII---EEIKEKL-----------------LKEYGENGEEIVPVIPISALTGDGIDEL  178 (188)
T ss_dssp             HTT-SEEEEEETCTSSHHHH-HHHH---HHHHHHH-----------------HHHTTSTTTSTEEEEEEBTTTTBTHHHH
T ss_pred             ccccceEEeeeeccchhhhH-HHHH---HHHHHHh-----------------ccccccCccccceEEEEecCCCCCHHHH
Confidence            46789999999999972221 1111   1111111                 1111 1   1358999999999999999


Q ss_pred             HHHHHHHH
Q psy7275          79 LQLIKLAG   86 (150)
Q Consensus        79 ~~~I~e~~   86 (150)
                      +++|.+.+
T Consensus       179 l~~l~~~~  186 (188)
T PF00009_consen  179 LEALVELL  186 (188)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhC
Confidence            99998754

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.36  E-value=7.5e-07  Score=70.19  Aligned_cols=26  Identities=15%  Similarity=0.077  Sum_probs=22.9

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      ..++++|||++|+|+++|++.|.+.+
T Consensus       173 ~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         173 NAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            46899999999999999999987654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.34  E-value=2e-06  Score=83.43  Aligned_cols=36  Identities=31%  Similarity=0.521  Sum_probs=30.0

Q ss_pred             HHHhhcCCcEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy7275          55 LDEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYE   90 (150)
Q Consensus        55 l~efy~~l~vv~VSA~TGeGideL~~~I~e~~~ey~   90 (150)
                      ..+|...+++|+|||+||+|+++|...|....+.|.
T Consensus       641 ~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l  676 (1049)
T PRK14845        641 VQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYL  676 (1049)
T ss_pred             hhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhh
Confidence            456778889999999999999999998877665544

>PRK04213 GTP-binding protein; Provisional

Probab=98.32  E-value=1.3e-06  Score=67.45  Aligned_cols=66  Identities=23%  Similarity=0.277  Sum_probs=41.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc--CCcEEEeecCCCCCHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS--TLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~--~l~vv~VSA~TGeGideL~~~   81 (150)
                      .++|+|+|+||+|+.+...  +.+   +.+.+.+.                +...|.  ..+++++||++| |++++++.
T Consensus       129 ~~~p~iiv~NK~Dl~~~~~--~~~---~~~~~~~~----------------~~~~~~~~~~~~~~~SA~~g-gi~~l~~~  186 (201)
T PRK04213        129 LGIPPIVAVNKMDKIKNRD--EVL---DEIAERLG----------------LYPPWRQWQDIIAPISAKKG-GIEELKEA  186 (201)
T ss_pred             cCCCeEEEEECccccCcHH--HHH---HHHHHHhc----------------CCccccccCCcEEEEecccC-CHHHHHHH
Confidence            4689999999999865431  111   11111111                000111  136899999999 99999999


Q ss_pred             HHHHHHHHHh
Q psy7275          82 IKLAGEDYEK   91 (150)
Q Consensus        82 I~e~~~ey~~   91 (150)
                      |.+.+.++.+
T Consensus       187 l~~~~~~~~~  196 (201)
T PRK04213        187 IRKRLHEAKR  196 (201)
T ss_pred             HHHhhcCccc
Confidence            9887765543

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.31  E-value=1.6e-06  Score=64.45  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=39.0

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+.....+       ..+.                   .. ....+++.+||++|.|++++++.+.+
T Consensus       113 ~~pvilv~NK~Dl~~~~~~~~-------~~~~-------------------~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~  165 (168)
T cd01897         113 NKPVIVVLNKIDLLTFEDLSE-------IEEE-------------------EE-LEGEEVLKISTLTEEGVDEVKNKACE  165 (168)
T ss_pred             cCCeEEEEEccccCchhhHHH-------HHHh-------------------hh-hccCceEEEEecccCCHHHHHHHHHH
Confidence            689999999999975433211       0000                   01 12468999999999999999999876


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       166 ~~  167 (168)
T cd01897         166 LL  167 (168)
T ss_pred             Hh
Confidence            53

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.30  E-value=1.8e-06  Score=63.12  Aligned_cols=58  Identities=24%  Similarity=0.236  Sum_probs=40.4

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +.+.|+|+|+||+|+.+......+.   +    .+.                 ..  .+.+++.+||.+|.|++++++.+
T Consensus        99 ~~~~~~iiv~NK~Dl~~~~~~~~~~---~----~~~-----------------~~--~~~~~~~iSa~~~~~~~~l~~~l  152 (158)
T cd01879          99 ELGLPVVVALNMIDEAEKRGIKIDL---D----KLS-----------------EL--LGVPVVPTSARKGEGIDELKDAI  152 (158)
T ss_pred             HcCCCEEEEEehhhhcccccchhhH---H----HHH-----------------Hh--hCCCeEEEEccCCCCHHHHHHHH
Confidence            3578999999999997654322111   1    110                 01  13689999999999999999988


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      ...+
T Consensus       153 ~~~~  156 (158)
T cd01879         153 AELA  156 (158)
T ss_pred             HHHh
Confidence            7753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.29  E-value=2.5e-06  Score=62.28  Aligned_cols=56  Identities=11%  Similarity=0.100  Sum_probs=37.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....   ..+...+.                     ..  .+.+++.+||++|.|++++++.+.
T Consensus       105 ~~~piivv~nK~Dl~~~~~~---~~~~~~~~---------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138         105 DDVPMVLVGNKCDLAARTVS---SRQGQDLA---------------------KS--YGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             CCCCEEEEEECcccccceec---HHHHHHHH---------------------HH--hCCeEEEecCCCCCCHHHHHHHHH
Confidence            46899999999998653221   10100000                     01  145899999999999999999886


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       159 ~~  160 (162)
T cd04138         159 RE  160 (162)
T ss_pred             HH
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.29  E-value=3.8e-07  Score=70.86  Aligned_cols=54  Identities=30%  Similarity=0.396  Sum_probs=37.7

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+++|+|+|+||+|.......   .-|.+.+.+.+                       +.+++++||.+|+|+++|+++|
T Consensus       103 e~g~P~vvvlN~~D~a~~~g~---~id~~~Ls~~L-----------------------g~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  103 ELGIPVVVVLNKMDEAERKGI---EIDAEKLSERL-----------------------GVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             HTTSSEEEEEETHHHHHHTTE---EE-HHHHHHHH-----------------------TS-EEEEBTTTTBTHHHHHHHH
T ss_pred             HcCCCEEEEEeCHHHHHHcCC---EECHHHHHHHh-----------------------CCCEEEEEeCCCcCHHHHHhhC
Confidence            368999999999997543321   11333333322                       5799999999999999999886

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01859 MJ1464 MJ1464

Probab=98.28  E-value=2.1e-06  Score=64.38  Aligned_cols=57  Identities=21%  Similarity=0.229  Sum_probs=40.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.....+|.    .+.                     ..  .+.++++|||++|.|+++|++.+.
T Consensus        40 ~~~p~iiv~NK~Dl~~~~~~~~~~----~~~---------------------~~--~~~~~~~iSa~~~~gi~~L~~~l~   92 (156)
T cd01859          40 LGKKLLIVLNKADLVPKEVLEKWK----SIK---------------------ES--EGIPVVYVSAKERLGTKILRRTIK   92 (156)
T ss_pred             CCCcEEEEEEhHHhCCHHHHHHHH----HHH---------------------Hh--CCCcEEEEEccccccHHHHHHHHH
Confidence            468999999999986543222221    000                     01  235789999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus        93 ~~~~   96 (156)
T cd01859          93 ELAK   96 (156)
T ss_pred             HHHh
Confidence            7654

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=1.4e-06  Score=78.77  Aligned_cols=69  Identities=29%  Similarity=0.375  Sum_probs=51.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+++||+|..+.+..        .....+.           +..+..++|.....+|++||+||+|+++|+..|.
T Consensus       106 a~vP~iVAiNKiDk~~~np~--------~v~~el~-----------~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il  166 (509)
T COG0532         106 AGVPIVVAINKIDKPEANPD--------KVKQELQ-----------EYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL  166 (509)
T ss_pred             CCCCEEEEEecccCCCCCHH--------HHHHHHH-----------HcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence            57899999999999755432        1112221           1133566788788999999999999999999999


Q ss_pred             HHHHHHHh
Q psy7275          84 LAGEDYEK   91 (150)
Q Consensus        84 e~~~ey~~   91 (150)
                      ...+-|+-
T Consensus       167 l~aev~el  174 (509)
T COG0532         167 LLAEVLEL  174 (509)
T ss_pred             HHHHHHhh
Confidence            88877733

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.25  E-value=1.1e-06  Score=65.23  Aligned_cols=60  Identities=20%  Similarity=0.271  Sum_probs=37.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+....       +...+.+...              ..+. ....+++.+||++|+|++++++.|
T Consensus       106 ~~~p~ilv~NK~D~~~~~~~-------~~~~~~~~~~--------------~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l  164 (167)
T cd04160         106 EGVPLLILANKQDLPDALSV-------EEIKEVFQDK--------------AEEIGRRDCLVLPVSALEGTGVREGIEWL  164 (167)
T ss_pred             cCCCEEEEEEccccccCCCH-------HHHHHHhccc--------------cccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence            46899999999998654221       1111111100              0000 123589999999999999999887


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      .+
T Consensus       165 ~~  166 (167)
T cd04160         165 VE  166 (167)
T ss_pred             hc
Confidence            53

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04171 SelB SelB subfamily

Probab=98.24  E-value=3.6e-06  Score=61.68  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=21.4

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..+++++||++|+|+++++..+..
T Consensus       140 ~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         140 DAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             CCcEEEEeCCCCcCHHHHHHHHhh
Confidence            568999999999999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01858 NGP_1 NGP-1

Probab=98.22  E-value=2.3e-06  Score=64.59  Aligned_cols=55  Identities=16%  Similarity=0.141  Sum_probs=39.0

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|.|+|+||+|+.+++....|+..+.                         +.+ ...++++||.+|.|+++|.+.|.+
T Consensus        39 ~~p~ilVlNKiDl~~~~~~~~~~~~~~-------------------------~~~-~~~~~~iSa~~~~~~~~L~~~l~~   92 (157)
T cd01858          39 HKHLIFVLNKCDLVPTWVTARWVKILS-------------------------KEY-PTIAFHASINNPFGKGSLIQLLRQ   92 (157)
T ss_pred             CCCEEEEEEchhcCCHHHHHHHHHHHh-------------------------cCC-cEEEEEeeccccccHHHHHHHHHH
Confidence            489999999999986554444542211                         112 123688999999999999998865


Q ss_pred             H
Q psy7275          85 A   85 (150)
Q Consensus        85 ~   85 (150)
                      .
T Consensus        93 ~   93 (157)
T cd01858          93 F   93 (157)
T ss_pred             H
Confidence            4

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.21  E-value=2e-06  Score=74.42  Aligned_cols=55  Identities=20%  Similarity=0.291  Sum_probs=40.8

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|+||+|+++.+....|+..+.                         .  .+++++.|||.+|.|+++|+..+
T Consensus       118 ~~~ip~ILVlNK~DLv~~~~~~~~~~~~~-------------------------~--~g~~v~~iSA~tg~GI~eL~~~L  170 (352)
T PRK12289        118 STGLEIVLCLNKADLVSPTEQQQWQDRLQ-------------------------Q--WGYQPLFISVETGIGLEALLEQL  170 (352)
T ss_pred             HCCCCEEEEEEchhcCChHHHHHHHHHHH-------------------------h--cCCeEEEEEcCCCCCHHHHhhhh
Confidence            35789999999999986554444542211                         0  13578999999999999999888


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      ..
T Consensus       171 ~~  172 (352)
T PRK12289        171 RN  172 (352)
T ss_pred             cc
Confidence            54

>cd00157 Rho Rho (Ras homology) family

Probab=98.21  E-value=2.1e-06  Score=63.64  Aligned_cols=68  Identities=15%  Similarity=0.195  Sum_probs=41.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+|+|+||+|+.++....+|+....   ..          ............+...+++.+||++|.|+++++..|.
T Consensus       103 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~---~~----------v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  169 (171)
T cd00157         103 PNVPIILVGTKIDLRDDENTLKKLEKGK---EP----------ITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAI  169 (171)
T ss_pred             CCCCEEEEEccHHhhhchhhhhhcccCC---Cc----------cCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHh
Confidence            4689999999999987654333320000   00          0000011122334445899999999999999999886


Q ss_pred             H
Q psy7275          84 L   84 (150)
Q Consensus        84 e   84 (150)
                      +
T Consensus       170 ~  170 (171)
T cd00157         170 R  170 (171)
T ss_pred             h
Confidence            4

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04175 Rap1 Rap1 subgroup

Probab=98.21  E-value=4e-06  Score=62.27  Aligned_cols=58  Identities=9%  Similarity=0.023  Sum_probs=38.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.+.....  ..+.+    .+          .       ..+  +.+++.+||++|.|+++++..|.
T Consensus       105 ~~~piilv~nK~Dl~~~~~~~--~~~~~----~~----------~-------~~~--~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175         105 EDVPMILVGNKCDLEDERVVG--KEQGQ----NL----------A-------RQW--GCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             CCCCEEEEEECCcchhccEEc--HHHHH----HH----------H-------HHh--CCEEEEeeCCCCCCHHHHHHHHH
Confidence            468999999999986532210  00000    00          0       111  36899999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       160 ~~l  162 (164)
T cd04175         160 RQI  162 (164)
T ss_pred             HHh
Confidence            644

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01862 Rab7 Rab7 subfamily

Probab=98.21  E-value=4.9e-06  Score=61.74  Aligned_cols=62  Identities=15%  Similarity=0.126  Sum_probs=41.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+++|+||+|+..+...  +.   +......                   +-+...+++.+||.+|.|++++++.|.
T Consensus       108 ~~~p~ilv~nK~Dl~~~~~~--~~---~~~~~~~-------------------~~~~~~~~~~~Sa~~~~gv~~l~~~i~  163 (172)
T cd01862         108 ENFPFVVLGNKIDLEEKRQV--ST---KKAQQWC-------------------QSNGNIPYFETSAKEAINVEQAFETIA  163 (172)
T ss_pred             CCceEEEEEECccccccccc--CH---HHHHHHH-------------------HHcCCceEEEEECCCCCCHHHHHHHHH
Confidence            37899999999999742211  00   0001110                   112246899999999999999999998


Q ss_pred             HHHHHH
Q psy7275          84 LAGEDY   89 (150)
Q Consensus        84 e~~~ey   89 (150)
                      +.+-+.
T Consensus       164 ~~~~~~  169 (172)
T cd01862         164 RKALEQ  169 (172)
T ss_pred             HHHHhc
Confidence            876544

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.20  E-value=2.7e-06  Score=65.49  Aligned_cols=26  Identities=23%  Similarity=0.134  Sum_probs=22.6

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      .+++++||++|+|+++++..|.+.+.
T Consensus       145 ~~~~~~SA~~~~gi~~l~~~l~~~l~  170 (183)
T cd04152         145 WHVQPACAIIGEGLQEGLEKLYEMIL  170 (183)
T ss_pred             eEEEEeecccCCCHHHHHHHHHHHHH
Confidence            46889999999999999999976663

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00880 Era_like Era (E

Probab=98.20  E-value=3.2e-06  Score=59.96  Aligned_cols=61  Identities=23%  Similarity=0.297  Sum_probs=44.1

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +.+.|+|+|+||+|+..+.....|..       ...               .........+++.+||.+|.|+++++..+
T Consensus       102 ~~~~~~ivv~nK~D~~~~~~~~~~~~-------~~~---------------~~~~~~~~~~~~~~sa~~~~~v~~l~~~l  159 (163)
T cd00880         102 ERGKPVLLVLNKIDLLPEEEEEELLE-------LRL---------------LILLLLLGLPVIAVSALTGEGIDELREAL  159 (163)
T ss_pred             hcCCeEEEEEEccccCChhhHHHHHH-------HHH---------------hhcccccCCceEEEeeeccCCHHHHHHHH
Confidence            56789999999999987665443321       000               01123456799999999999999999988


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       160 ~~~  162 (163)
T cd00880         160 IEA  162 (163)
T ss_pred             Hhh
Confidence            764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01889 SelB_euk SelB subfamily

Probab=98.20  E-value=5.5e-06  Score=64.07  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=41.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+|+|+||+|+...+....   ..+.+.+.+.              ..+.++ +.+.+++++||++|+|+++|++.+
T Consensus       119 ~~~~~iiv~NK~Dl~~~~~~~~---~~~~~~~~l~--------------~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l  181 (192)
T cd01889         119 LCKKLIVVLNKIDLIPEEERER---KIEKMKKKLQ--------------KTLEKTRFKNSPIIPVSAKPGGGEAELGKDL  181 (192)
T ss_pred             cCCCEEEEEECcccCCHHHHHH---HHHHHHHHHH--------------HHHHhcCcCCCCEEEEeccCCCCHHHHHHHH
Confidence            3679999999999875432111   0111111110              001111 235799999999999999999998


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      ....
T Consensus       182 ~~~~  185 (192)
T cd01889         182 NNLI  185 (192)
T ss_pred             Hhcc
Confidence            8654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01898 Obg Obg subfamily

Probab=98.18  E-value=3.9e-06  Score=62.31  Aligned_cols=56  Identities=25%  Similarity=0.392  Sum_probs=40.2

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+.....+|+.++      .                  .+. ...+++.+||++|.|++++++.|.+
T Consensus       114 ~~p~ivv~NK~Dl~~~~~~~~~~~~~------~------------------~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~  168 (170)
T cd01898         114 EKPRIVVLNKIDLLDEEELFELLKEL------L------------------KEL-WGKPVFPISALTGEGLDELLRKLAE  168 (170)
T ss_pred             ccccEEEEEchhcCCchhhHHHHHHH------H------------------hhC-CCCCEEEEecCCCCCHHHHHHHHHh
Confidence            67999999999997655433333211      0                  010 2468999999999999999998875


Q ss_pred             H
Q psy7275          85 A   85 (150)
Q Consensus        85 ~   85 (150)
                      .
T Consensus       169 ~  169 (170)
T cd01898         169 L  169 (170)
T ss_pred             h
Confidence            4

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04157 Arl6 Arl6 subfamily

Probab=98.17  E-value=4.2e-06  Score=61.49  Aligned_cols=58  Identities=17%  Similarity=0.292  Sum_probs=37.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+.....       .+.+.+.                +.... ...+++.+||++|+|+++++..|
T Consensus       103 ~~~p~iiv~NK~Dl~~~~~~~-------~~~~~l~----------------~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l  159 (162)
T cd04157         103 RRVPILFFANKMDLPDALTAV-------KITQLLG----------------LENIKDKPWHIFASNALTGEGLDEGVQWL  159 (162)
T ss_pred             CCCCEEEEEeCccccCCCCHH-------HHHHHhC----------------CccccCceEEEEEeeCCCCCchHHHHHHH
Confidence            478999999999986542211       1112211                00111 12468899999999999999987


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      .+
T Consensus       160 ~~  161 (162)
T cd04157         160 QA  161 (162)
T ss_pred             hc
Confidence            53

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04147 Ras_dva Ras-dva subfamily

Probab=98.16  E-value=5.9e-06  Score=64.28  Aligned_cols=77  Identities=14%  Similarity=0.061  Sum_probs=47.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.........       .....            .  ....  ....++.+||++|.|++++++.+.
T Consensus       103 ~~~piilv~NK~Dl~~~~~~v~~-------~~~~~------------~--~~~~--~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147         103 KFVPIVVVGNKADSLEEERQVPA-------KDALS------------T--VELD--WNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCcEEEEEEccccccccccccH-------HHHHH------------H--HHhh--cCCcEEEecCCCCCCHHHHHHHHH
Confidence            46899999999998653211100       01100            0  0001  135789999999999999999998


Q ss_pred             HHHHHHHhhhHHHHHHHHHHH
Q psy7275          84 LAGEDYEKNYRVEWIRLRDEK  104 (150)
Q Consensus        84 e~~~ey~~~y~pe~e~~~~~~  104 (150)
                      +.+. -..-..|.++++++.-
T Consensus       160 ~~~~-~~~~~~~~~~~~~~~~  179 (198)
T cd04147         160 RQAN-LPYNLSPALRRRRESL  179 (198)
T ss_pred             HHhh-cccccchhhHHHHhhc
Confidence            7664 2233356666665543

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.15  E-value=7.7e-06  Score=60.19  Aligned_cols=58  Identities=12%  Similarity=0.038  Sum_probs=38.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+......     ..+.....                  ...  .+.+++.+||++|.|+++++..|.
T Consensus       106 ~~~piiiv~NK~Dl~~~~~~-----~~~~~~~~------------------~~~--~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145         106 DEFPMILVGNKADLEHQRKV-----SREEGQEL------------------ARK--LKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             CCCCEEEEeeCcccccccee-----cHHHHHHH------------------HHH--cCCcEEEeeCCCCCCHHHHHHHHH
Confidence            47899999999998653221     00000000                  011  136889999999999999999887


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            653

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04136 Rap_like Rap-like subfamily

Probab=98.15  E-value=5.7e-06  Score=60.83  Aligned_cols=56  Identities=13%  Similarity=0.092  Sum_probs=37.5

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+.....  .++-    ..+                 ... + +.+++.+||++|.|+++++..+.+
T Consensus       106 ~~piilv~nK~Dl~~~~~~~--~~~~----~~~-----------------~~~-~-~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136         106 NVPMVLVGNKCDLEDERVVS--REEG----QAL-----------------ARQ-W-GCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             CCCEEEEEECccccccceec--HHHH----HHH-----------------HHH-c-CCeEEEecCCCCCCHHHHHHHHHH
Confidence            68999999999986532210  0000    000                 011 2 268999999999999999998865


Q ss_pred             H
Q psy7275          85 A   85 (150)
Q Consensus        85 ~   85 (150)
                      .
T Consensus       161 ~  161 (163)
T cd04136         161 Q  161 (163)
T ss_pred             h
Confidence            3

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.14  E-value=7.7e-06  Score=62.13  Aligned_cols=58  Identities=9%  Similarity=0.064  Sum_probs=40.2

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|+|+|+||+|+.+.+.        +.+.+.+.                  +.....+++.|||++|+|++++++.+.+
T Consensus        91 ~~~ii~v~nK~Dl~~~~~--------~~~~~~~~------------------~~~~~~p~~~~Sa~~g~gi~~l~~~l~~  144 (158)
T PRK15467         91 SKRQIAVISKTDMPDADV--------AATRKLLL------------------ETGFEEPIFELNSHDPQSVQQLVDYLAS  144 (158)
T ss_pred             CCCeEEEEEccccCcccH--------HHHHHHHH------------------HcCCCCCEEEEECCCccCHHHHHHHHHH
Confidence            569999999999854221        11111111                  1111258999999999999999999988


Q ss_pred             HHHH
Q psy7275          85 AGED   88 (150)
Q Consensus        85 ~~~e   88 (150)
                      ...+
T Consensus       145 ~~~~  148 (158)
T PRK15467        145 LTKQ  148 (158)
T ss_pred             hchh
Confidence            7743

>cd01855 YqeH YqeH

Probab=98.14  E-value=7.5e-06  Score=63.42  Aligned_cols=64  Identities=20%  Similarity=0.229  Sum_probs=39.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+|+|+||+|+.+.+...+....+   ..+..                .... +....++.|||++|.|+++|+..|
T Consensus        60 ~~~~~ilV~NK~Dl~~~~~~~~~~~~~---~~~~~----------------~~~~~~~~~~i~~vSA~~~~gi~eL~~~l  120 (190)
T cd01855          60 GNNPVILVGNKIDLLPKDKNLVRIKNW---LRAKA----------------AAGLGLKPKDVILISAKKGWGVEELINAI  120 (190)
T ss_pred             CCCcEEEEEEchhcCCCCCCHHHHHHH---HHHHH----------------HhhcCCCcccEEEEECCCCCCHHHHHHHH
Confidence            357999999999997543321111100   00000                0000 112368999999999999999999


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+..
T Consensus       121 ~~~l  124 (190)
T cd01855         121 KKLA  124 (190)
T ss_pred             HHHh
Confidence            8765

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.13  E-value=1.1e-05  Score=62.72  Aligned_cols=60  Identities=15%  Similarity=0.036  Sum_probs=40.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.+....     ..+...+..                   .-+....++.+||++|.|+++++..|.
T Consensus       109 ~~~piilv~NK~Dl~~~~~~-----~~~~~~~~~-------------------~~~~~~~~~e~Sak~~~~v~e~f~~l~  164 (201)
T cd04107         109 EPIPCLLLANKCDLKKRLAK-----DGEQMDQFC-------------------KENGFIGWFETSAKEGINIEEAMRFLV  164 (201)
T ss_pred             CCCcEEEEEECCCccccccc-----CHHHHHHHH-------------------HHcCCceEEEEeCCCCCCHHHHHHHHH
Confidence            57899999999999642211     111111111                   111225789999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       165 ~~l~  168 (201)
T cd04107         165 KNIL  168 (201)
T ss_pred             HHHH
Confidence            7663

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.13  E-value=9.7e-06  Score=59.94  Aligned_cols=59  Identities=10%  Similarity=-0.024  Sum_probs=39.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+|+|.||+|+.+.....     .+..+..                  . +.+ +.+++.+||++|.|++++++.|.
T Consensus       104 ~~~pii~v~nK~Dl~~~~~~~-----~~~~~~~------------------~-~~~-~~~~~~~Sa~~~~~i~~l~~~l~  158 (164)
T smart00173      104 DDVPIVLVGNKCDLESERVVS-----TEEGKEL------------------A-RQW-GCPFLETSAKERVNVDEAFYDLV  158 (164)
T ss_pred             CCCCEEEEEECccccccceEc-----HHHHHHH------------------H-HHc-CCEEEEeecCCCCCHHHHHHHHH
Confidence            367999999999986532110     0000000                  1 111 36899999999999999999987


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       159 ~~~~  162 (164)
T smart00173      159 REIR  162 (164)
T ss_pred             HHHh
Confidence            6543

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.12  E-value=7e-06  Score=71.84  Aligned_cols=69  Identities=22%  Similarity=0.088  Sum_probs=46.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|.|+|+||+|+.+.+...+.+       ..+.                 ..+....++++|||++|.|+++|++.|.+
T Consensus       275 ~kP~IlVlNKiDl~~~~el~~~l-------~~l~-----------------~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~  330 (390)
T PRK12298        275 EKPRWLVFNKIDLLDEEEAEERA-------KAIV-----------------EALGWEGPVYLISAASGLGVKELCWDLMT  330 (390)
T ss_pred             CCCEEEEEeCCccCChHHHHHHH-------HHHH-----------------HHhCCCCCEEEEECCCCcCHHHHHHHHHH
Confidence            57999999999987543321111       1110                 11111247899999999999999999999


Q ss_pred             HHHHHHhhhHHHH
Q psy7275          85 AGEDYEKNYRVEW   97 (150)
Q Consensus        85 ~~~ey~~~y~pe~   97 (150)
                      .+.+....|.++.
T Consensus       331 ~L~~~~~~~~~~~  343 (390)
T PRK12298        331 FIEENPREEAEEA  343 (390)
T ss_pred             HhhhCcccCCccc
Confidence            8877666565543

>cd04112 Rab26 Rab26 subfamily

Probab=98.12  E-value=5.1e-06  Score=64.18  Aligned_cols=64  Identities=14%  Similarity=0.043  Sum_probs=42.9

Q ss_pred             CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|.||+|+..+... .++.       ..+                 ...+  +.+++.+||++|.|+++++..|
T Consensus       105 ~~~piiiv~NK~Dl~~~~~~~~~~~-------~~l-----------------~~~~--~~~~~e~Sa~~~~~v~~l~~~l  158 (191)
T cd04112         105 EDVVIMLLGNKADMSGERVVKREDG-------ERL-----------------AKEY--GVPFMETSAKTGLNVELAFTAV  158 (191)
T ss_pred             CCCcEEEEEEcccchhccccCHHHH-------HHH-----------------HHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence            46899999999998643221 0100       010                 0111  3589999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy7275          83 KLAGEDYEKNY   93 (150)
Q Consensus        83 ~e~~~ey~~~y   93 (150)
                      .+.+.+-..+|
T Consensus       159 ~~~~~~~~~~~  169 (191)
T cd04112         159 AKELKHRKYEQ  169 (191)
T ss_pred             HHHHHHhcccc
Confidence            88775544444

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.12  E-value=5.9e-06  Score=67.72  Aligned_cols=54  Identities=17%  Similarity=0.222  Sum_probs=38.9

Q ss_pred             CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+.... .+|+..+.                         .  .+.+++.+||++|+|+++|+..+
T Consensus        66 ~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-------------------------~--~g~~v~~~SAktg~gi~eLf~~l  118 (245)
T TIGR00157        66 QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-------------------------N--IGYQVLMTSSKNQDGLKELIEAL  118 (245)
T ss_pred             CCCCEEEEEECcccCCCHHHHHHHHHHHH-------------------------H--CCCeEEEEecCCchhHHHHHhhh
Confidence            57899999999999754332 13332110                         1  24688999999999999999888


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      ..
T Consensus       119 ~~  120 (245)
T TIGR00157       119 QN  120 (245)
T ss_pred             cC
Confidence            64

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.11  E-value=7.2e-06  Score=70.86  Aligned_cols=68  Identities=25%  Similarity=0.358  Sum_probs=45.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+......      ++.+...+..              .+ .+....+++++||++|.|++++++.+.
T Consensus       282 ~~~~iiiv~NK~Dl~~~~~~------~~~~~~~~~~--------------~~-~~~~~~~vi~~SA~~g~~v~~l~~~i~  340 (429)
T TIGR03594       282 AGKALVIVVNKWDLVKDEKT------REEFKKELRR--------------KL-PFLDFAPIVFISALTGQGVDKLLDAID  340 (429)
T ss_pred             cCCcEEEEEECcccCCCHHH------HHHHHHHHHH--------------hc-ccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence            46899999999999732211      1111222210              00 122346999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy7275          84 LAGEDYEKN   92 (150)
Q Consensus        84 e~~~ey~~~   92 (150)
                      +..+.+...
T Consensus       341 ~~~~~~~~~  349 (429)
T TIGR03594       341 EVYENANRR  349 (429)
T ss_pred             HHHHHhcCc
Confidence            887766443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.11  E-value=6.7e-06  Score=60.76  Aligned_cols=68  Identities=25%  Similarity=0.317  Sum_probs=42.4

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +.++|+|+|+||+|+.+... .       .+.+.+..   +...       ..+.+....+++++||.+|+|++++++.|
T Consensus       100 ~~~~p~ivv~NK~Dl~~~~~-~-------~~~~~~~~---~~~~-------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T cd01887         100 AANVPFIVALNKIDKPNANP-E-------RVKNELSE---LGLQ-------GEDEWGGDVQIVPTSAKTGEGIDDLLEAI  161 (168)
T ss_pred             HcCCCEEEEEEceecccccH-H-------HHHHHHHH---hhcc-------ccccccCcCcEEEeecccCCCHHHHHHHH
Confidence            35789999999999864321 1       11111110   0000       00012234689999999999999999999


Q ss_pred             HHHHHH
Q psy7275          83 KLAGED   88 (150)
Q Consensus        83 ~e~~~e   88 (150)
                      .+...+
T Consensus       162 ~~~~~~  167 (168)
T cd01887         162 LLLAEK  167 (168)
T ss_pred             HHhhhc
Confidence            877643

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04151 Arl1 Arl1 subfamily

Probab=98.10  E-value=3.3e-06  Score=62.69  Aligned_cols=57  Identities=21%  Similarity=0.217  Sum_probs=37.2

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      +.|+|+|+||+|+.+....       +.+.+.+.                ...+ -.+.+++++||++|.|++++++.+.
T Consensus       100 ~~piiiv~nK~Dl~~~~~~-------~~i~~~~~----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  156 (158)
T cd04151         100 GAVLLVFANKQDMPGALSE-------AEISEKLG----------------LSELKDRTWSIFKTSAIKGEGLDEGMDWLV  156 (158)
T ss_pred             CCcEEEEEeCCCCCCCCCH-------HHHHHHhC----------------ccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence            6899999999998654311       11111111                0011 0124799999999999999999875


Q ss_pred             H
Q psy7275          84 L   84 (150)
Q Consensus        84 e   84 (150)
                      +
T Consensus       157 ~  157 (158)
T cd04151         157 N  157 (158)
T ss_pred             c
Confidence            4

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.09  E-value=9.1e-06  Score=61.85  Aligned_cols=31  Identities=16%  Similarity=0.050  Sum_probs=26.4

Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHHHHHHhhh
Q psy7275          63 KVVGFSSVSGEGTEELLQLIKLAGEDYEKNY   93 (150)
Q Consensus        63 ~vv~VSA~TGeGideL~~~I~e~~~ey~~~y   93 (150)
                      +++.+||++|.|+++++..+.+.+......+
T Consensus       143 ~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~  173 (187)
T cd04132         143 AYLECSAKTMENVEEVFDTAIEEALKKEGKA  173 (187)
T ss_pred             EEEEccCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence            7899999999999999999988876555444

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.09  E-value=7.7e-06  Score=61.25  Aligned_cols=74  Identities=23%  Similarity=0.173  Sum_probs=41.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+++|+||+|+...+......+   ...+.+........   ...  . ..+....+++++||++|.|+++++..+.
T Consensus       113 ~~~~i~iv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~--~-~~~~~~~~v~~~Sa~~g~gi~~l~~~l~  183 (189)
T cd00881         113 GGLPIIVAINKIDRVGEEDLEEVLR---EIKELLGLIGFIST---KEE--G-TRNGLLVPIVPGSALTGIGVEELLEAIV  183 (189)
T ss_pred             CCCCeEEEEECCCCcchhcHHHHHH---HHHHHHccccccch---hhh--h-cccCCcceEEEEecccCcCHHHHHHHHH
Confidence            4789999999999986332211111   11111110000000   000  0 0012356899999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      ..+
T Consensus       184 ~~l  186 (189)
T cd00881         184 EHL  186 (189)
T ss_pred             hhC
Confidence            653

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK15494 era GTPase Era; Provisional

Probab=98.09  E-value=3.7e-06  Score=71.89  Aligned_cols=100  Identities=16%  Similarity=0.115  Sum_probs=66.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|.|+|+||+|+.+..     .   +...+.+                  .+......+++|||++|.|+++|++.|.
T Consensus       159 ~~~p~IlViNKiDl~~~~-----~---~~~~~~l------------------~~~~~~~~i~~iSAktg~gv~eL~~~L~  212 (339)
T PRK15494        159 LNIVPIFLLNKIDIESKY-----L---NDIKAFL------------------TENHPDSLLFPISALSGKNIDGLLEYIT  212 (339)
T ss_pred             cCCCEEEEEEhhcCcccc-----H---HHHHHHH------------------HhcCCCcEEEEEeccCccCHHHHHHHHH
Confidence            456899999999985421     1   1111111                  1112235799999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCccc
Q psy7275          84 LAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWASC  129 (150)
Q Consensus        84 e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  129 (150)
                      +.+.+-...|.++.--=+.++.-..+-=+++-+..+...++-+.+.
T Consensus       213 ~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v  258 (339)
T PRK15494        213 SKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTV  258 (339)
T ss_pred             HhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEE
Confidence            9988777777666544444454555555667788888876654443

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.08  E-value=6.5e-06  Score=66.63  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=42.4

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhch----hh-h---hhhHHHHHHHHHHhhcCCcEEEeecCCCCC
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADS----SY-I---SNLTRSMSLALDEFYSTLKVVGFSSVSGEG   74 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~----~y-~---~~L~~slsl~l~efy~~l~vv~VSA~TGeG   74 (150)
                      ..++|+|+|+||+|+.+.+...+   ..+.+.+.+....    .+ .   ...+...  ....+....+++.|||+||+|
T Consensus       136 ~~~ip~ivvvNK~D~~~~~~~~~---~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~--~~~~~~~~~pi~~vSavtg~G  210 (224)
T cd04165         136 ALNIPVFVVVTKIDLAPANILQE---TLKDLKRILKVPGVRKLPVPVKSDDDVVLAA--SNFSSERIVPIFQVSNVTGEG  210 (224)
T ss_pred             HcCCCEEEEEECccccCHHHHHH---HHHHHHHHhcCCCccccceeeecccceeehh--hcCCccccCcEEEeeCCCccC
Confidence            46789999999999876543222   1222223322100    00 0   0000000  000122345999999999999


Q ss_pred             HHHHHHHHHH
Q psy7275          75 TEELLQLIKL   84 (150)
Q Consensus        75 ideL~~~I~e   84 (150)
                      +++|...|..
T Consensus       211 i~~L~~~L~~  220 (224)
T cd04165         211 LDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHh
Confidence            9999988864

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04124 RabL2 RabL2 subfamily

Probab=98.08  E-value=1.4e-05  Score=59.86  Aligned_cols=29  Identities=21%  Similarity=0.188  Sum_probs=25.3

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey   89 (150)
                      +.+++.+||++|.|++++++.+.+.+.+|
T Consensus       132 ~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         132 NLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999998776655

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.08  E-value=9.7e-06  Score=58.98  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=19.5

Q ss_pred             CcEEEeecCCCCCHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+++.+||++|.|+++++..+.
T Consensus       120 ~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       120 EPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             CcEEEEecCCCCCHHHHHHHHh
Confidence            3789999999999999998873

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01890 LepA LepA subfamily

Probab=98.08  E-value=1.3e-05  Score=60.26  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=37.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....        ...+.+.          ..+     . ....+++.+||++|+|++++++.+.
T Consensus       118 ~~~~iiiv~NK~Dl~~~~~~--------~~~~~~~----------~~~-----~-~~~~~~~~~Sa~~g~gi~~l~~~l~  173 (179)
T cd01890         118 NNLEIIPVINKIDLPSADPE--------RVKQQIE----------DVL-----G-LDPSEAILVSAKTGLGVEDLLEAIV  173 (179)
T ss_pred             cCCCEEEEEECCCCCcCCHH--------HHHHHHH----------HHh-----C-CCcccEEEeeccCCCCHHHHHHHHH
Confidence            46899999999998643221        0011111          000     0 1113589999999999999999987


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       174 ~~  175 (179)
T cd01890         174 ER  175 (179)
T ss_pred             hh
Confidence            64

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01895 EngA2 EngA2 subfamily

Probab=98.08  E-value=1e-05  Score=59.24  Aligned_cols=62  Identities=21%  Similarity=0.365  Sum_probs=40.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+....     ..+.....+...              + ......+++++||++|+|++++++.+.
T Consensus       112 ~~~~~iiv~nK~Dl~~~~~~-----~~~~~~~~~~~~--------------~-~~~~~~~~~~~Sa~~~~~i~~~~~~l~  171 (174)
T cd01895         112 EGKALVIVVNKWDLVEKDSK-----TMKEFKKEIRRK--------------L-PFLDYAPIVFISALTGQGVDKLFDAID  171 (174)
T ss_pred             cCCCEEEEEeccccCCccHH-----HHHHHHHHHHhh--------------c-ccccCCceEEEeccCCCCHHHHHHHHH
Confidence            46899999999999765310     011111222110              0 011246899999999999999999987


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      ++
T Consensus       172 ~~  173 (174)
T cd01895         172 EV  173 (174)
T ss_pred             Hh
Confidence            64

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.08  E-value=1e-05  Score=69.18  Aligned_cols=56  Identities=23%  Similarity=0.280  Sum_probs=39.1

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+.....++       .+.+.                 ++ + ..++++|||++|+|+++++..|.+
T Consensus       273 ~kp~IIV~NK~DL~~~~~~~~~-------~~~l~-----------------~~-~-~~~vi~iSAktg~GI~eL~~~I~~  326 (329)
T TIGR02729       273 EKPRIVVLNKIDLLDEEELAEL-------LKELK-----------------KA-L-GKPVFPISALTGEGLDELLYALAE  326 (329)
T ss_pred             cCCEEEEEeCccCCChHHHHHH-------HHHHH-----------------HH-c-CCcEEEEEccCCcCHHHHHHHHHH
Confidence            6799999999999754321111       11111                 01 1 358999999999999999999876


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       327 ~l  328 (329)
T TIGR02729       327 LL  328 (329)
T ss_pred             Hh
Confidence            53

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01893 Miro1 Miro1 subfamily

Probab=98.07  E-value=1.5e-05  Score=59.86  Aligned_cols=62  Identities=15%  Similarity=0.043  Sum_probs=40.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....    +.+.....                 ....|....+++.+||++|.|+++++..+.
T Consensus       102 ~~~pviiv~nK~Dl~~~~~~~----~~~~~~~~-----------------~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~  160 (166)
T cd01893         102 VKVPIILVGNKSDLRDGSSQA----GLEEEMLP-----------------IMNEFREIETCVECSAKTLINVSEVFYYAQ  160 (166)
T ss_pred             CCCCEEEEEEchhcccccchh----HHHHHHHH-----------------HHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence            468999999999996543210    00000000                 112232223789999999999999999998


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       161 ~~~  163 (166)
T cd01893         161 KAV  163 (166)
T ss_pred             HHh
Confidence            765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.07  E-value=1.5e-05  Score=73.11  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=28.2

Q ss_pred             HHhhcCCcEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy7275          56 DEFYSTLKVVGFSSVSGEGTEELLQLIKLAGEDYE   90 (150)
Q Consensus        56 ~efy~~l~vv~VSA~TGeGideL~~~I~e~~~ey~   90 (150)
                      .+|+..+++++|||+||+|+++|++.+...+++|.
T Consensus       187 ~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l  221 (586)
T PRK04004        187 KDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYL  221 (586)
T ss_pred             hccCCCceEeeccCCCCCChHHHHHHHHHHHHHHH
Confidence            35667789999999999999999998866555443

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.06  E-value=1.4e-05  Score=58.90  Aligned_cols=56  Identities=14%  Similarity=0.189  Sum_probs=37.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+........  ++...+.                      +- .+.+++.+||++|.|+++++..|.
T Consensus       105 ~~~p~iiv~nK~Dl~~~~~v~~--~~~~~~~----------------------~~-~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106         105 GDIPMVLVQTKIDLLDQAVITN--EEAEALA----------------------KR-LQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             CCCCEEEEEEChhcccccCCCH--HHHHHHH----------------------HH-cCCeEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999865432100  0000000                      11 145899999999999999999886


Q ss_pred             H
Q psy7275          84 L   84 (150)
Q Consensus        84 e   84 (150)
                      .
T Consensus       160 ~  160 (162)
T cd04106         160 E  160 (162)
T ss_pred             H
Confidence            5

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01864 Rab19 Rab19 subfamily

Probab=98.06  E-value=1.2e-05  Score=59.83  Aligned_cols=58  Identities=22%  Similarity=0.196  Sum_probs=38.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+......     ..+   ++..                +.+.+....++.+||++|.|++++++.+.
T Consensus       107 ~~~p~ivv~nK~Dl~~~~~~-----~~~---~~~~----------------~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~  162 (165)
T cd01864         107 SNVVLLLIGNKCDLEEQREV-----LFE---EACT----------------LAEKNGMLAVLETSAKESQNVEEAFLLMA  162 (165)
T ss_pred             CCCcEEEEEECccccccccc-----CHH---HHHH----------------HHHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence            46899999999998654221     000   1100                11112234789999999999999999887


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       163 ~~  164 (165)
T cd01864         163 TE  164 (165)
T ss_pred             Hh
Confidence            53

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.05  E-value=1e-05  Score=70.23  Aligned_cols=68  Identities=26%  Similarity=0.395  Sum_probs=46.1

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +.+.|+|+|+||+|+.+.+...++       .+.+..          .    + .+....+++++||++|.|++++++.+
T Consensus       282 ~~~~~~ivv~NK~Dl~~~~~~~~~-------~~~~~~----------~----l-~~~~~~~i~~~SA~~~~gv~~l~~~i  339 (435)
T PRK00093        282 EAGRALVIVVNKWDLVDEKTMEEF-------KKELRR----------R----L-PFLDYAPIVFISALTGQGVDKLLEAI  339 (435)
T ss_pred             HcCCcEEEEEECccCCCHHHHHHH-------HHHHHH----------h----c-ccccCCCEEEEeCCCCCCHHHHHHHH
Confidence            346899999999999754332111       111110          0    0 12235799999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy7275          83 KLAGEDYEKN   92 (150)
Q Consensus        83 ~e~~~ey~~~   92 (150)
                      ....+++...
T Consensus       340 ~~~~~~~~~~  349 (435)
T PRK00093        340 DEAYENANRR  349 (435)
T ss_pred             HHHHHHHcCc
Confidence            9887766543

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.05  E-value=1.1e-05  Score=59.16  Aligned_cols=58  Identities=17%  Similarity=0.153  Sum_probs=38.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|.||+|+.+....     +.+.....                  ..+  .+.+++.+||++|+|++++++.|.
T Consensus       109 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~------------------~~~--~~~~~~~~Sa~~~~gi~~l~~~l~  163 (168)
T cd04119         109 ENIVVVVCANKIDLTKHRAV-----SEDEGRLW------------------AES--KGFKYFETSACTGEGVNEMFQTLF  163 (168)
T ss_pred             CCceEEEEEEchhccccccc-----CHHHHHHH------------------HHH--cCCeEEEEECCCCCCHHHHHHHHH
Confidence            46899999999998642211     00100110                  011  136889999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       164 ~~l  166 (168)
T cd04119         164 SSI  166 (168)
T ss_pred             HHH
Confidence            654

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.05  E-value=8.4e-06  Score=60.51  Aligned_cols=56  Identities=23%  Similarity=0.176  Sum_probs=40.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.....+|.        ..                 ...+....+++.+||++|.|++++++.+.
T Consensus       119 ~~~p~ivv~NK~Dl~~~~~~~~~~--------~~-----------------~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~  173 (176)
T cd01881         119 TAKPVIYVLNKIDLDDAEELEEEL--------VR-----------------ELALEEGAEVVPISAKTEEGLDELIRAIY  173 (176)
T ss_pred             hhCCeEEEEEchhcCchhHHHHHH--------HH-----------------HHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence            468999999999997655433321        00                 01123356899999999999999999875


Q ss_pred             H
Q psy7275          84 L   84 (150)
Q Consensus        84 e   84 (150)
                      .
T Consensus       174 ~  174 (176)
T cd01881         174 E  174 (176)
T ss_pred             h
Confidence            4

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04163 Era Era subfamily

Probab=98.04  E-value=1.3e-05  Score=57.82  Aligned_cols=57  Identities=23%  Similarity=0.325  Sum_probs=39.6

Q ss_pred             CCCCEEEeeecCCCCC-chhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVN-HKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~-~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+++|+||+|+.. ++...+|+.       .+.                  ......+++.+|+++|.|+++|++.|
T Consensus       110 ~~~~~iiv~nK~Dl~~~~~~~~~~~~-------~~~------------------~~~~~~~~~~~s~~~~~~~~~l~~~l  164 (168)
T cd04163         110 SKTPVILVLNKIDLVKDKEDLLPLLE-------KLK------------------ELGPFAEIFPISALKGENVDELLEEI  164 (168)
T ss_pred             hCCCEEEEEEchhccccHHHHHHHHH-------HHH------------------hccCCCceEEEEeccCCChHHHHHHH
Confidence            3579999999999974 333333331       111                  11224588999999999999999998


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       165 ~~~  167 (168)
T cd04163         165 VKY  167 (168)
T ss_pred             Hhh
Confidence            753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04127 Rab27A Rab27a subfamily

Probab=98.04  E-value=1.9e-05  Score=59.55  Aligned_cols=57  Identities=11%  Similarity=-0.016  Sum_probs=38.5

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|.||+|+.+.....     .+...+.                  ..+  .+++++.+||++|.|++++++.+.+
T Consensus       120 ~~piiiv~nK~Dl~~~~~v~-----~~~~~~~------------------~~~--~~~~~~e~Sak~~~~v~~l~~~l~~  174 (180)
T cd04127         120 NPDIVLCGNKADLEDQRQVS-----EEQAKAL------------------ADK--YGIPYFETSAATGTNVEKAVERLLD  174 (180)
T ss_pred             CCcEEEEEeCccchhcCccC-----HHHHHHH------------------HHH--cCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            67999999999986532210     0000110                  011  1468899999999999999999876


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       175 ~~  176 (180)
T cd04127         175 LV  176 (180)
T ss_pred             HH
Confidence            54

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.04  E-value=1e-05  Score=72.35  Aligned_cols=62  Identities=15%  Similarity=0.108  Sum_probs=39.7

Q ss_pred             CC-CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           5 GF-PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~l-P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ++ |+|+|+||+|+.+.+...+-+   +.+.+.+           ..      .+....++++|||++|+|++.|+++|.
T Consensus       170 gi~~iIVvlNKiDlv~~~~~~~~~---~ei~~~l-----------~~------~~~~~~~iipVSA~~G~nI~~Ll~~L~  229 (460)
T PTZ00327        170 KLKHIIILQNKIDLVKEAQAQDQY---EEIRNFV-----------KG------TIADNAPIIPISAQLKYNIDVVLEYIC  229 (460)
T ss_pred             CCCcEEEEEecccccCHHHHHHHH---HHHHHHH-----------Hh------hccCCCeEEEeeCCCCCCHHHHHHHHH
Confidence            44 578999999997644322211   1111111           00      122456999999999999999999988


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       230 ~~l  232 (460)
T PTZ00327        230 TQI  232 (460)
T ss_pred             hhC
Confidence            643

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.04  E-value=1.9e-05  Score=58.69  Aligned_cols=58  Identities=14%  Similarity=0.145  Sum_probs=39.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+...... .    .+   ++..        +       ...  .+.+++.+||++|+|+++++..+.
T Consensus       106 ~~~~~iiv~nK~Dl~~~~~~-~----~~---~~~~--------~-------~~~--~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869         106 ENVNKLLVGNKCDLTDKRVV-D----YS---EAQE--------F-------ADE--LGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             CCCcEEEEEEChhcccccCC-C----HH---HHHH--------H-------HHH--cCCeEEEEECCCCcCHHHHHHHHH
Confidence            36899999999998653321 0    01   1100        0       001  146899999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       161 ~~~  163 (166)
T cd01869         161 REI  163 (166)
T ss_pred             HHH
Confidence            755

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04140 ARHI_like ARHI subfamily

Probab=98.03  E-value=1.6e-05  Score=59.49  Aligned_cols=56  Identities=14%  Similarity=0.048  Sum_probs=37.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.......     .+   ++..        +       ...  ...+++.+||++|+|+++++..|.
T Consensus       107 ~~~piilv~nK~Dl~~~~~v~-----~~---~~~~--------~-------~~~--~~~~~~e~SA~~g~~v~~~f~~l~  161 (165)
T cd04140         107 EKIPIMLVGNKCDESHKREVS-----SN---EGAA--------C-------ATE--WNCAFMETSAKTNHNVQELFQELL  161 (165)
T ss_pred             CCCCEEEEEECccccccCeec-----HH---HHHH--------H-------HHH--hCCcEEEeecCCCCCHHHHHHHHH
Confidence            468999999999986522210     00   1100        0       001  135889999999999999999886


Q ss_pred             H
Q psy7275          84 L   84 (150)
Q Consensus        84 e   84 (150)
                      +
T Consensus       162 ~  162 (165)
T cd04140         162 N  162 (165)
T ss_pred             h
Confidence            5

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>COG1159 Era GTPase [General function prediction only]

Probab=98.03  E-value=1.6e-05  Score=67.70  Aligned_cols=98  Identities=21%  Similarity=0.224  Sum_probs=69.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ++.|+|+++||+|...++...      ..+.+.+.                  .-....++++|||++|.|++.|.+.+.
T Consensus       113 ~~~pvil~iNKID~~~~~~~l------~~~~~~~~------------------~~~~f~~ivpiSA~~g~n~~~L~~~i~  168 (298)
T COG1159         113 TKTPVILVVNKIDKVKPKTVL------LKLIAFLK------------------KLLPFKEIVPISALKGDNVDTLLEIIK  168 (298)
T ss_pred             cCCCeEEEEEccccCCcHHHH------HHHHHHHH------------------hhCCcceEEEeeccccCCHHHHHHHHH
Confidence            367999999999988776520      01111111                  112334999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCC
Q psy7275          84 LAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPL  125 (150)
Q Consensus        84 e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~  125 (150)
                      ..+.|-...|.+++---+.++--..+--+++-+..+...++-
T Consensus       169 ~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPh  210 (298)
T COG1159         169 EYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPH  210 (298)
T ss_pred             HhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCc
Confidence            999988888877766556666555555666667777776543

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.03  E-value=1.4e-05  Score=72.39  Aligned_cols=60  Identities=22%  Similarity=0.225  Sum_probs=42.9

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|+|+|+||+|+.+.....+++      ...+                  .+  ...++++|||++|+|+++|+.+|.+
T Consensus       284 ~kP~IVVlNKiDL~da~el~e~l------~~~l------------------~~--~g~~Vf~ISA~tgeGLdEL~~~L~e  337 (500)
T PRK12296        284 ERPRLVVLNKIDVPDARELAEFV------RPEL------------------EA--RGWPVFEVSAASREGLRELSFALAE  337 (500)
T ss_pred             CCCEEEEEECccchhhHHHHHHH------HHHH------------------HH--cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999986443221111      1111                  11  1468999999999999999999999


Q ss_pred             HHHHHH
Q psy7275          85 AGEDYE   90 (150)
Q Consensus        85 ~~~ey~   90 (150)
                      .+.++.
T Consensus       338 ll~~~r  343 (500)
T PRK12296        338 LVEEAR  343 (500)
T ss_pred             HHHhhh
Confidence            887654

>cd04122 Rab14 Rab14 subfamily

Probab=98.03  E-value=2.4e-05  Score=58.47  Aligned_cols=58  Identities=16%  Similarity=0.092  Sum_probs=38.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|.||+|+.+....     ..+...+.                  ..+  .+.+++.+||++|+|+++++..+.
T Consensus       106 ~~~~iiiv~nK~Dl~~~~~~-----~~~~~~~~------------------~~~--~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122         106 PNTVIFLIGNKADLEAQRDV-----TYEEAKQF------------------ADE--NGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             CCCeEEEEEECcccccccCc-----CHHHHHHH------------------HHH--cCCEEEEEECCCCCCHHHHHHHHH
Confidence            46799999999998654321     00100110                  011  246899999999999999988876


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      ..+
T Consensus       161 ~~~  163 (166)
T cd04122         161 KKI  163 (166)
T ss_pred             HHH
Confidence            544

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04144 Ras2 Ras2 subfamily

Probab=98.02  E-value=1.7e-05  Score=61.15  Aligned_cols=58  Identities=16%  Similarity=0.051  Sum_probs=38.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|.||+|+.......     .+   +...        +       ... + +.+++.+||++|.|+++++..+.
T Consensus       105 ~~~piilvgNK~Dl~~~~~v~-----~~---~~~~--------~-------~~~-~-~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144         105 ADVPIMIVGNKCDKVYEREVS-----TE---EGAA--------L-------ARR-L-GCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCCEEEEEEChhccccCccC-----HH---HHHH--------H-------HHH-h-CCEEEEecCCCCCCHHHHHHHHH
Confidence            468999999999986432210     00   0000        0       011 1 35889999999999999999997


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       160 ~~l  162 (190)
T cd04144         160 RAL  162 (190)
T ss_pred             HHH
Confidence            655

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01856 YlqF YlqF

Probab=98.01  E-value=1.6e-05  Score=60.88  Aligned_cols=55  Identities=24%  Similarity=0.320  Sum_probs=38.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|.|+|+||+|+.+.+...+|++       .+.                  .  ...+++.+||.+|.|+++|...+.+
T Consensus        46 ~k~~ilVlNK~Dl~~~~~~~~~~~-------~~~------------------~--~~~~vi~iSa~~~~gi~~L~~~l~~   98 (171)
T cd01856          46 NKPRIIVLNKADLADPKKTKKWLK-------YFE------------------S--KGEKVLFVNAKSGKGVKKLLKAAKK   98 (171)
T ss_pred             CCCEEEEEehhhcCChHHHHHHHH-------HHH------------------h--cCCeEEEEECCCcccHHHHHHHHHH
Confidence            569999999999965433223331       110                  0  1247899999999999999999877


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      ..
T Consensus        99 ~l  100 (171)
T cd01856          99 LL  100 (171)
T ss_pred             HH
Confidence            54

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01868 Rab11_like Rab11-like

Probab=98.01  E-value=2.1e-05  Score=58.29  Aligned_cols=56  Identities=13%  Similarity=0.085  Sum_probs=37.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|.||+|+......  ..   +..+...                  .+  ...+++.+||++|.|++++++.+..
T Consensus       108 ~~pi~vv~nK~Dl~~~~~~--~~---~~~~~~~------------------~~--~~~~~~~~Sa~~~~~v~~l~~~l~~  162 (165)
T cd01868         108 NIVIMLVGNKSDLRHLRAV--PT---EEAKAFA------------------EK--NGLSFIETSALDGTNVEEAFKQLLT  162 (165)
T ss_pred             CCeEEEEEECccccccccC--CH---HHHHHHH------------------HH--cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999998653221  00   1111110                  01  2468999999999999999999875


Q ss_pred             H
Q psy7275          85 A   85 (150)
Q Consensus        85 ~   85 (150)
                      .
T Consensus       163 ~  163 (165)
T cd01868         163 E  163 (165)
T ss_pred             H
Confidence            4

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04154 Arl2 Arl2 subfamily

Probab=98.01  E-value=1.2e-05  Score=60.80  Aligned_cols=57  Identities=25%  Similarity=0.269  Sum_probs=37.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+|+|+||+|+..+...       +.+.+.+..                .+. -...+++.+||++|.|+++++..+
T Consensus       114 ~~~p~iiv~nK~Dl~~~~~~-------~~~~~~~~~----------------~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  170 (173)
T cd04154         114 AGATLLILANKQDLPGALSE-------EEIREALEL----------------DKISSHHWRIQPCSAVTGEGLLQGIDWL  170 (173)
T ss_pred             cCCCEEEEEECcccccCCCH-------HHHHHHhCc----------------cccCCCceEEEeccCCCCcCHHHHHHHH
Confidence            46799999999998653211       111222210                000 124589999999999999999887


Q ss_pred             H
Q psy7275          83 K   83 (150)
Q Consensus        83 ~   83 (150)
                      .
T Consensus       171 ~  171 (173)
T cd04154         171 V  171 (173)
T ss_pred             h
Confidence            4

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01892 Miro2 Miro2 subfamily

Probab=98.01  E-value=1.3e-05  Score=60.90  Aligned_cols=58  Identities=17%  Similarity=0.216  Sum_probs=38.0

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|.||+|+.+....  ...+.+.+...                      +....++.+||.+|.|+++++..+.+
T Consensus       108 ~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~----------------------~~~~~~~~~Sa~~~~~v~~lf~~l~~  163 (169)
T cd01892         108 EIPCLFVAAKADLDEQQQR--YEVQPDEFCRK----------------------LGLPPPLHFSSKLGDSSNELFTKLAT  163 (169)
T ss_pred             CCeEEEEEEcccccccccc--cccCHHHHHHH----------------------cCCCCCEEEEeccCccHHHHHHHHHH
Confidence            6899999999998643211  11111111111                      11124589999999999999999987


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       164 ~~  165 (169)
T cd01892         164 AA  165 (169)
T ss_pred             Hh
Confidence            65

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.00  E-value=2.7e-05  Score=69.09  Aligned_cols=68  Identities=15%  Similarity=0.227  Sum_probs=45.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.+.. ..      +...+..          .    + .+....+++.+||++|.|+++++..|.
T Consensus       321 ~~~piIiV~NK~Dl~~~~~~-~~------~~~~i~~----------~----l-~~~~~~~~~~~SAk~g~gv~~lf~~i~  378 (472)
T PRK03003        321 AGRALVLAFNKWDLVDEDRR-YY------LEREIDR----------E----L-AQVPWAPRVNISAKTGRAVDKLVPALE  378 (472)
T ss_pred             cCCCEEEEEECcccCChhHH-HH------HHHHHHH----------h----c-ccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            56899999999999754321 00      1111110          0    0 011235889999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy7275          84 LAGEDYEKNY   93 (150)
Q Consensus        84 e~~~ey~~~y   93 (150)
                      +..+.+....
T Consensus       379 ~~~~~~~~~i  388 (472)
T PRK03003        379 TALESWDTRI  388 (472)
T ss_pred             HHHHHhcccC
Confidence            8887776544

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.00  E-value=7.4e-05  Score=62.71  Aligned_cols=28  Identities=29%  Similarity=0.289  Sum_probs=24.3

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~ey   89 (150)
                      .++++|||++|+|+++|++.|.+.....
T Consensus       213 ~~v~~iSA~~g~Gi~~L~~~i~~~~~~~  240 (300)
T TIGR00750       213 PPVLTTSAVEGRGIDELWDAIEEHKTFL  240 (300)
T ss_pred             CCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence            3689999999999999999999876533

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd04142 RRP22 RRP22 subfamily

Probab=98.00  E-value=2e-05  Score=62.11  Aligned_cols=60  Identities=12%  Similarity=0.014  Sum_probs=40.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+......     +.+..+...                  .. ..+.+++.+||++|.|++++|..+.
T Consensus       115 ~~~piiivgNK~Dl~~~~~~-----~~~~~~~~~------------------~~-~~~~~~~e~Sak~g~~v~~lf~~i~  170 (198)
T cd04142         115 KEPPIVVVGNKRDQQRHRFA-----PRHVLSVLV------------------RK-SWKCGYLECSAKYNWHILLLFKELL  170 (198)
T ss_pred             CCCCEEEEEECccccccccc-----cHHHHHHHH------------------HH-hcCCcEEEecCCCCCCHHHHHHHHH
Confidence            56899999999999654321     111111100                  00 0146899999999999999999988


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      ...-
T Consensus       171 ~~~~  174 (198)
T cd04142         171 ISAT  174 (198)
T ss_pred             HHhh
Confidence            7554

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04123 Rab21 Rab21 subfamily

Probab=98.00  E-value=2.5e-05  Score=56.90  Aligned_cols=56  Identities=18%  Similarity=0.131  Sum_probs=37.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+..+....     .+...+..                  ..  .+.+++.+||++|.|++++++.+..
T Consensus       105 ~~piiiv~nK~D~~~~~~~~-----~~~~~~~~------------------~~--~~~~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123         105 NISLVIVGNKIDLERQRVVS-----KSEAEEYA------------------KS--VGAKHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             CCeEEEEEECcccccccCCC-----HHHHHHHH------------------HH--cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            68999999999987533210     01011100                  11  1457899999999999999999866


Q ss_pred             H
Q psy7275          85 A   85 (150)
Q Consensus        85 ~   85 (150)
                      .
T Consensus       160 ~  160 (162)
T cd04123         160 R  160 (162)
T ss_pred             H
Confidence            4

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.00  E-value=1.8e-05  Score=58.32  Aligned_cols=60  Identities=18%  Similarity=0.186  Sum_probs=39.3

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|+||+|+......       +.+...+....               ......+++.+||++|.|++++++.|
T Consensus        98 ~~~~piiiv~nK~D~~~~~~~-------~~~~~~~~~~~---------------~~~~~~~~~~~Sa~~~~gv~~~~~~l  155 (158)
T cd00878          98 LKGVPLLIFANKQDLPGALSV-------SELIEKLGLEK---------------ILGRRWHIQPCSAVTGDGLDEGLDWL  155 (158)
T ss_pred             cCCCcEEEEeeccCCccccCH-------HHHHHhhChhh---------------ccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence            357899999999998754321       11111111000               01234589999999999999999987


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      ..
T Consensus       156 ~~  157 (158)
T cd00878         156 LQ  157 (158)
T ss_pred             hh
Confidence            53

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01870 RhoA_like RhoA-like subfamily

Probab=98.00  E-value=2.9e-05  Score=58.06  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=22.6

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      ..+++.+||++|.|+++++..|.+.+
T Consensus       149 ~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         149 AFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             CcEEEEeccccCcCHHHHHHHHHHHh
Confidence            45899999999999999999987653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=97.99  E-value=2.6e-05  Score=66.97  Aligned_cols=59  Identities=25%  Similarity=0.253  Sum_probs=40.4

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+.....+         +.+..              ....  ...+++++||++|+|+++|++.|.+
T Consensus       271 ~kp~IIV~NKiDL~~~~~~~~---------~~~~~--------------~~~~--~~~~i~~iSAktg~GI~eL~~~L~~  325 (335)
T PRK12299        271 DKPRILVLNKIDLLDEEEERE---------KRAAL--------------ELAA--LGGPVFLISAVTGEGLDELLRALWE  325 (335)
T ss_pred             cCCeEEEEECcccCCchhHHH---------HHHHH--------------HHHh--cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            579999999999875432110         00000              0011  1368999999999999999999988


Q ss_pred             HHHH
Q psy7275          85 AGED   88 (150)
Q Consensus        85 ~~~e   88 (150)
                      .+.+
T Consensus       326 ~l~~  329 (335)
T PRK12299        326 LLEE  329 (335)
T ss_pred             HHHh
Confidence            7654

>cd01865 Rab3 Rab3 subfamily

Probab=97.99  E-value=3.2e-05  Score=57.83  Aligned_cols=57  Identities=9%  Similarity=0.031  Sum_probs=38.4

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|+|+|.||+|+.+....     ..+   +...        +.       ..  .+.+++.+||++|.|++++++.+..
T Consensus       106 ~~piivv~nK~Dl~~~~~~-----~~~---~~~~--------~~-------~~--~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865         106 NAQVILVGNKCDMEDERVV-----SSE---RGRQ--------LA-------DQ--LGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             CCCEEEEEECcccCccccc-----CHH---HHHH--------HH-------HH--cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999654321     000   0000        00       01  1357999999999999999999987


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       161 ~~  162 (165)
T cd01865         161 II  162 (165)
T ss_pred             HH
Confidence            64

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PRK12288 GTPase RsgA; Reviewed

Probab=97.99  E-value=1.7e-05  Score=68.48  Aligned_cols=54  Identities=24%  Similarity=0.259  Sum_probs=38.3

Q ss_pred             CCCCEEEeeecCCCCCchhh---HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYA---IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~---~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~   80 (150)
                      .++|.|+|+||+|+.+....   .+|+..+                         ..  .+.+++.|||.+|+|+++|++
T Consensus       149 ~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y-------------------------~~--~g~~v~~vSA~tg~GideL~~  201 (347)
T PRK12288        149 LGIEPLIVLNKIDLLDDEGRAFVNEQLDIY-------------------------RN--IGYRVLMVSSHTGEGLEELEA  201 (347)
T ss_pred             cCCCEEEEEECccCCCcHHHHHHHHHHHHH-------------------------Hh--CCCeEEEEeCCCCcCHHHHHH
Confidence            46899999999999765421   1222110                         01  135899999999999999998


Q ss_pred             HHHH
Q psy7275          81 LIKL   84 (150)
Q Consensus        81 ~I~e   84 (150)
                      .|..
T Consensus       202 ~L~~  205 (347)
T PRK12288        202 ALTG  205 (347)
T ss_pred             HHhh
Confidence            8864

>cd01894 EngA1 EngA1 subfamily

Probab=97.99  E-value=1.8e-05  Score=57.46  Aligned_cols=54  Identities=17%  Similarity=0.177  Sum_probs=38.0

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +.+.|+|+|+||+|+.+....   .       ..+                  .+. ...+++.+||++|.|++++++.+
T Consensus       103 ~~~~piiiv~nK~D~~~~~~~---~-------~~~------------------~~~-~~~~~~~~Sa~~~~gv~~l~~~l  153 (157)
T cd01894         103 KSKKPVILVVNKVDNIKEEDE---A-------AEF------------------YSL-GFGEPIPISAEHGRGIGDLLDAI  153 (157)
T ss_pred             hcCCCEEEEEECcccCChHHH---H-------HHH------------------Hhc-CCCCeEEEecccCCCHHHHHHHH
Confidence            346899999999999765431   0       000                  011 11278999999999999999998


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       154 ~~~  156 (157)
T cd01894         154 LEL  156 (157)
T ss_pred             Hhh
Confidence            753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=97.99  E-value=4.8e-06  Score=61.37  Aligned_cols=58  Identities=24%  Similarity=0.308  Sum_probs=37.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~   81 (150)
                      .+.|+|+|+||+|+......       +.+...+.                +.++.  ...+++.+||++|+|++++++.
T Consensus       100 ~~~piilv~nK~Dl~~~~~~-------~~i~~~~~----------------~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~  156 (160)
T cd04156         100 KGVPVVLLANKQDLPGALTA-------EEITRRFK----------------LKKYCSDRDWYVQPCSAVTGEGLAEAFRK  156 (160)
T ss_pred             cCCCEEEEEECcccccCcCH-------HHHHHHcC----------------CcccCCCCcEEEEecccccCCChHHHHHH
Confidence            46899999999998543211       11111111                00111  2347889999999999999998


Q ss_pred             HHH
Q psy7275          82 IKL   84 (150)
Q Consensus        82 I~e   84 (150)
                      |.+
T Consensus       157 i~~  159 (160)
T cd04156         157 LAS  159 (160)
T ss_pred             Hhc
Confidence            853

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04134 Rho3 Rho3 subfamily

Probab=97.99  E-value=2.4e-05  Score=60.40  Aligned_cols=27  Identities=15%  Similarity=0.128  Sum_probs=23.3

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      ..+++.+||++|.|++++|..+.+.+.
T Consensus       148 ~~~~~e~SAk~~~~v~e~f~~l~~~~~  174 (189)
T cd04134         148 ALRYLECSAKLNRGVNEAFTEAARVAL  174 (189)
T ss_pred             CCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence            367899999999999999999887653

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PTZ00099 rab6; Provisional

Probab=97.98  E-value=2.8e-05  Score=60.34  Aligned_cols=57  Identities=14%  Similarity=0.135  Sum_probs=37.4

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      .+|+|+|.||+|+......     +.+   ++..        +       ..++  +..++.+||++|+|++++|..|.+
T Consensus        85 ~~piilVgNK~DL~~~~~v-----~~~---e~~~--------~-------~~~~--~~~~~e~SAk~g~nV~~lf~~l~~  139 (176)
T PTZ00099         85 DVIIALVGNKTDLGDLRKV-----TYE---EGMQ--------K-------AQEY--NTMFHETSAKAGHNIKVLFKKIAA  139 (176)
T ss_pred             CCeEEEEEECcccccccCC-----CHH---HHHH--------H-------HHHc--CCEEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999998643211     000   1111        0       0111  356789999999999999998876


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       140 ~l  141 (176)
T PTZ00099        140 KL  141 (176)
T ss_pred             HH
Confidence            54

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=97.98  E-value=2.6e-05  Score=58.85  Aligned_cols=59  Identities=15%  Similarity=0.120  Sum_probs=39.1

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|.||+|+......     +.+... .+                 ..++  ..+++++||++|.|+++++..+
T Consensus       104 ~~~~p~ilv~NK~Dl~~~~~~-----~~~~~~-~~-----------------~~~~--~~~~~~~Sa~~~~gv~~l~~~l  158 (180)
T cd04137         104 KESVPIVLVGNKSDLHTQRQV-----STEEGK-EL-----------------AESW--GAAFLESSARENENVEEAFELL  158 (180)
T ss_pred             CCCCCEEEEEEchhhhhcCcc-----CHHHHH-HH-----------------HHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence            357899999999998643221     000000 00                 0111  3578999999999999999999


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       159 ~~~~  162 (180)
T cd04137         159 IEEI  162 (180)
T ss_pred             HHHH
Confidence            7654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.98  E-value=1.8e-05  Score=62.64  Aligned_cols=58  Identities=16%  Similarity=0.177  Sum_probs=39.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|.|+|+||+|+.+....     +.+.+.+.+                  .+.++..+++.+||++|+|++++++.+.+
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~-----~~~~~~~~l------------------~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~  204 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGF-----DVEKMKADA------------------KKINPEAEIILMSLKTGEGLDEWLEFLEG  204 (207)
T ss_pred             hhCCEEEEEHHHccccchh-----hHHHHHHHH------------------HHhCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999754221     011111111                  12345579999999999999999999876


Q ss_pred             H
Q psy7275          85 A   85 (150)
Q Consensus        85 ~   85 (150)
                      .
T Consensus       205 ~  205 (207)
T TIGR00073       205 Q  205 (207)
T ss_pred             h
Confidence            4

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.98  E-value=2.2e-05  Score=65.12  Aligned_cols=56  Identities=18%  Similarity=0.377  Sum_probs=41.1

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+.....+|.+.++                         +  ...+++.|||.+|.|+++|.+.+.+
T Consensus        48 ~kp~IiVlNK~DL~~~~~~~~~~~~~~-------------------------~--~~~~vi~iSa~~~~gi~~L~~~i~~  100 (276)
T TIGR03596        48 NKPRLIVLNKADLADPAVTKQWLKYFE-------------------------E--KGIKALAINAKKGKGVKKIIKAAKK  100 (276)
T ss_pred             CCCEEEEEEccccCCHHHHHHHHHHHH-------------------------H--cCCeEEEEECCCcccHHHHHHHHHH
Confidence            579999999999976544445552211                         0  1247899999999999999998877


Q ss_pred             HHH
Q psy7275          85 AGE   87 (150)
Q Consensus        85 ~~~   87 (150)
                      .+.
T Consensus       101 ~~~  103 (276)
T TIGR03596       101 LLK  103 (276)
T ss_pred             HHH
Confidence            653

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.98  E-value=6.1e-05  Score=64.90  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=24.2

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      .+++.|||++|.|+++|.+.|.+...
T Consensus       235 ~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        235 PPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999875

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=97.98  E-value=2.2e-05  Score=71.85  Aligned_cols=63  Identities=24%  Similarity=0.309  Sum_probs=40.6

Q ss_pred             CCCC-EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHH--hhcCCcEEEeecCCCCCHHHHHH
Q psy7275           4 TGFP-YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDE--FYSTLKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         4 ~~lP-~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~e--fy~~l~vv~VSA~TGeGideL~~   80 (150)
                      .++| +|+|+||+|+.+.+..    ...   .+.+.       .       .+..  |..+.++++|||++|+|+++++.
T Consensus       101 lgi~~iIVVlNK~Dlv~~~~~----~~~---~~ei~-------~-------~l~~~~~~~~~~ii~vSA~tG~GI~eL~~  159 (581)
T TIGR00475       101 LGIPHTIVVITKADRVNEEEI----KRT---EMFMK-------Q-------ILNSYIFLKNAKIFKTSAKTGQGIGELKK  159 (581)
T ss_pred             cCCCeEEEEEECCCCCCHHHH----HHH---HHHHH-------H-------HHHHhCCCCCCcEEEEeCCCCCCchhHHH
Confidence            4678 9999999999764421    111   11111       0       0111  11257999999999999999998


Q ss_pred             HHHHHHH
Q psy7275          81 LIKLAGE   87 (150)
Q Consensus        81 ~I~e~~~   87 (150)
                      .+....+
T Consensus       160 ~L~~l~~  166 (581)
T TIGR00475       160 ELKNLLE  166 (581)
T ss_pred             HHHHHHH
Confidence            7765543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04135 Tc10 TC10 subfamily

Probab=97.98  E-value=2.2e-05  Score=58.68  Aligned_cols=25  Identities=20%  Similarity=0.137  Sum_probs=21.8

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+++.+||++|.|++++++.+.+.+
T Consensus       149 ~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         149 HCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             CEEEEecCCcCCCHHHHHHHHHHHh
Confidence            4789999999999999999987653

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>smart00175 RAB Rab subfamily of small GTPases

Probab=97.98  E-value=3e-05  Score=56.86  Aligned_cols=58  Identities=12%  Similarity=0.056  Sum_probs=39.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+++|+||+|+......     +.+....           +       ...  .+.+++.+||.+|.|++++++.|.
T Consensus       104 ~~~pivvv~nK~D~~~~~~~-----~~~~~~~-----------~-------~~~--~~~~~~e~Sa~~~~~i~~l~~~i~  158 (164)
T smart00175      104 PNVVIMLVGNKSDLEDQRQV-----SREEAEA-----------F-------AEE--HGLPFFETSAKTNTNVEEAFEELA  158 (164)
T ss_pred             CCCeEEEEEEchhcccccCC-----CHHHHHH-----------H-------HHH--cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            46899999999998653221     1110000           0       011  246799999999999999999998


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       159 ~~~  161 (164)
T smart00175      159 REI  161 (164)
T ss_pred             HHH
Confidence            765

Rab GTPases are implicated in vesicle trafficking.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=97.97  E-value=2.6e-05  Score=59.50  Aligned_cols=62  Identities=21%  Similarity=0.170  Sum_probs=41.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+++|+||+|+.+........       +.+.              ..+...  ..+++++||++|+|++++++.|.
T Consensus       134 ~~~~~iiv~nK~Dl~~~~~~~~~~-------~~i~--------------~~l~~~--~~~~~~~Sa~~~~gi~~l~~~i~  190 (196)
T PRK00454        134 YGIPVLIVLTKADKLKKGERKKQL-------KKVR--------------KALKFG--DDEVILFSSLKKQGIDELRAAIA  190 (196)
T ss_pred             cCCcEEEEEECcccCCHHHHHHHH-------HHHH--------------HHHHhc--CCceEEEEcCCCCCHHHHHHHHH
Confidence            468999999999987653321111       1111              011111  46899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      ..+.|
T Consensus       191 ~~~~~  195 (196)
T PRK00454        191 KWLAE  195 (196)
T ss_pred             HHhcC
Confidence            77653

>cd04129 Rho2 Rho2 subfamily

Probab=97.97  E-value=1.6e-05  Score=61.22  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=22.1

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+++.+||++|.|++++++.+.+.+
T Consensus       148 ~~~~e~Sa~~~~~v~~~f~~l~~~~  172 (187)
T cd04129         148 KKYMECSALTGEGVDDVFEAATRAA  172 (187)
T ss_pred             cEEEEccCCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999998654

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.97  E-value=1.8e-05  Score=56.06  Aligned_cols=53  Identities=11%  Similarity=0.229  Sum_probs=37.0

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      +.|+|+|+||+|+..+.....       ....+                  .. ....+++++||.+|.|++++++.|.
T Consensus       108 ~~p~ivv~nK~D~~~~~~~~~-------~~~~~------------------~~-~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       108 NVPIILVGNKIDLRDAKLKTH-------VAFLF------------------AK-LNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             CCcEEEEEEcccCCcchhhHH-------HHHHH------------------hh-ccCCceEEeecCCCCCHHHHHHHhh
Confidence            789999999999976542110       00111                  11 2345799999999999999998874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.97  E-value=8.4e-06  Score=61.25  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=19.7

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..++.+||+||.|++++++.|.+
T Consensus       136 ~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         136 WYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             EEEEEeeCCCCCCHHHHHHHHhc
Confidence            46779999999999999988753

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04155 Arl3 Arl3 subfamily

Probab=97.96  E-value=1.1e-05  Score=60.21  Aligned_cols=58  Identities=26%  Similarity=0.327  Sum_probs=37.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+++|+||+|+.++....+       +.+.+.                +..+ ....+++.+||++|+|++++++.|
T Consensus       114 ~~~p~ivv~nK~D~~~~~~~~~-------i~~~l~----------------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  170 (173)
T cd04155         114 AGVPVLVFANKQDLATAAPAEE-------IAEALN----------------LHDLRDRTWHIQACSAKTGEGLQEGMNWV  170 (173)
T ss_pred             cCCCEEEEEECCCCccCCCHHH-------HHHHcC----------------CcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence            4689999999999866433211       112111                0011 112367899999999999999987


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      .+
T Consensus       171 ~~  172 (173)
T cd04155         171 CK  172 (173)
T ss_pred             hc
Confidence            53

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=97.96  E-value=2.7e-05  Score=60.21  Aligned_cols=59  Identities=19%  Similarity=0.107  Sum_probs=37.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      +.|+|+|.||+|+.+....       +.+.+.+.                +..+- ....++.+||+||+|++++++.|.
T Consensus       118 ~~piilv~NK~Dl~~~~~~-------~~~~~~l~----------------l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~  174 (181)
T PLN00223        118 DAVLLVFANKQDLPNAMNA-------AEITDKLG----------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
T ss_pred             CCCEEEEEECCCCCCCCCH-------HHHHHHhC----------------ccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence            6799999999998653221       11222221                11110 112466899999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       175 ~~~  177 (181)
T PLN00223        175 NNI  177 (181)
T ss_pred             HHH
Confidence            654

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=97.96  E-value=1.6e-05  Score=59.48  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.1

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+++.+||++|.|+++++..+.+.+
T Consensus       147 ~~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      147 VKYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999987654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=97.95  E-value=2.7e-05  Score=58.38  Aligned_cols=58  Identities=12%  Similarity=0.011  Sum_probs=39.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.+....  +.++.   ...                  ...  ...+++.+||++|.|+++++..+.
T Consensus       107 ~~~p~iiv~nK~Dl~~~~~~--~~~~~---~~~------------------~~~--~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867         107 EDVERMLVGNKCDMEEKRVV--SKEEG---EAL------------------ADE--YGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             CCCcEEEEEECcccccccCC--CHHHH---HHH------------------HHH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            46899999999999753221  11111   110                  011  135889999999999999999988


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       162 ~~~  164 (167)
T cd01867         162 KDI  164 (167)
T ss_pred             HHH
Confidence            765

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=97.95  E-value=2.7e-05  Score=59.27  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=24.0

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGED   88 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~e   88 (150)
                      .+++.+||++|.|++++++.+...+.+
T Consensus       140 ~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         140 AEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            578899999999999999999887754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04109 Rab28 Rab28 subfamily

Probab=97.95  E-value=3.2e-05  Score=61.08  Aligned_cols=28  Identities=14%  Similarity=0.101  Sum_probs=23.9

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGED   88 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~e   88 (150)
                      +.+++.+||++|+|++++++.|.+.+..
T Consensus       140 ~~~~~~iSAktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         140 GMESCLVSAKTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3678999999999999999999876543

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>COG2262 HflX GTPases [General function prediction only]

Probab=97.95  E-value=1.6e-05  Score=70.30  Aligned_cols=55  Identities=24%  Similarity=0.227  Sum_probs=40.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+|+|+||+|.+......          ..+.                  . +.+ ..|+|||++|+|++.|++.|.
T Consensus       303 ~~~p~i~v~NKiD~~~~~~~~----------~~~~------------------~-~~~-~~v~iSA~~~~gl~~L~~~i~  352 (411)
T COG2262         303 DEIPIILVLNKIDLLEDEEIL----------AELE------------------R-GSP-NPVFISAKTGEGLDLLRERII  352 (411)
T ss_pred             CCCCEEEEEecccccCchhhh----------hhhh------------------h-cCC-CeEEEEeccCcCHHHHHHHHH
Confidence            357999999999987654310          1111                  0 112 699999999999999999999


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+..
T Consensus       353 ~~l~~  357 (411)
T COG2262         353 ELLSG  357 (411)
T ss_pred             HHhhh
Confidence            98863

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.94  E-value=2.1e-05  Score=60.12  Aligned_cols=60  Identities=15%  Similarity=0.001  Sum_probs=37.7

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+++|.||+|+.+....       +.+.+.+.-.               ........++++||++|+|+++++..|.+
T Consensus       114 ~~piilv~NK~Dl~~~~~~-------~~i~~~~~~~---------------~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  171 (175)
T smart00177      114 DAVILVFANKQDLPDAMKA-------AEITEKLGLH---------------SIRDRNWYIQPTCATSGDGLYEGLTWLSN  171 (175)
T ss_pred             CCcEEEEEeCcCcccCCCH-------HHHHHHhCcc---------------ccCCCcEEEEEeeCCCCCCHHHHHHHHHH
Confidence            5799999999998643211       1111221100               00011245778999999999999999876


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      ..
T Consensus       172 ~~  173 (175)
T smart00177      172 NL  173 (175)
T ss_pred             Hh
Confidence            54

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.94  E-value=3.8e-05  Score=71.56  Aligned_cols=68  Identities=13%  Similarity=0.161  Sum_probs=46.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.+.. ++      +...+..              .+ .+....+++++||++|.|+++|++.+.
T Consensus       560 ~~~piIiV~NK~DL~~~~~~-~~------~~~~~~~--------------~l-~~~~~~~ii~iSAktg~gv~~L~~~i~  617 (712)
T PRK09518        560 AGRALVLVFNKWDLMDEFRR-QR------LERLWKT--------------EF-DRVTWARRVNLSAKTGWHTNRLAPAMQ  617 (712)
T ss_pred             cCCCEEEEEEchhcCChhHH-HH------HHHHHHH--------------hc-cCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999764321 11      1111110              00 122345889999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy7275          84 LAGEDYEKNY   93 (150)
Q Consensus        84 e~~~ey~~~y   93 (150)
                      +...++....
T Consensus       618 ~~~~~~~~~i  627 (712)
T PRK09518        618 EALESWDQRI  627 (712)
T ss_pred             HHHHHhcccC
Confidence            9887776544

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.94  E-value=3.1e-05  Score=59.34  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=22.3

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      ...++.+||+||+|++++++.+..+
T Consensus       149 ~~~~~e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         149 AVKYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHH
Confidence            3689999999999999999998764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04176 Rap2 Rap2 subgroup

Probab=97.93  E-value=2.4e-05  Score=57.91  Aligned_cols=57  Identities=18%  Similarity=0.117  Sum_probs=37.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.......     .+   +...        +       ...+  +.+++++||++|.|+++++..+.
T Consensus       105 ~~~piviv~nK~Dl~~~~~~~-----~~---~~~~--------~-------~~~~--~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176         105 EKVPIILVGNKVDLESEREVS-----SA---EGRA--------L-------AEEW--GCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             CCCCEEEEEECccchhcCccC-----HH---HHHH--------H-------HHHh--CCEEEEecCCCCCCHHHHHHHHH
Confidence            468999999999986432110     00   0000        0       0111  35889999999999999998886


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       160 ~~  161 (163)
T cd04176         160 RQ  161 (163)
T ss_pred             Hh
Confidence            53

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04114 Rab30 Rab30 subfamily

Probab=97.93  E-value=3.3e-05  Score=57.31  Aligned_cols=56  Identities=11%  Similarity=0.116  Sum_probs=38.1

Q ss_pred             CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|.|+|.||+|+.+.... .+..+++                         .+- ....++.+||++|.|+++++..|
T Consensus       111 ~~~~~i~v~NK~D~~~~~~i~~~~~~~~-------------------------~~~-~~~~~~~~Sa~~~~gv~~l~~~i  164 (169)
T cd04114         111 NKVITILVGNKIDLAERREVSQQRAEEF-------------------------SDA-QDMYYLETSAKESDNVEKLFLDL  164 (169)
T ss_pred             CCCeEEEEEECcccccccccCHHHHHHH-------------------------HHH-cCCeEEEeeCCCCCCHHHHHHHH
Confidence            46899999999998643321 1111100                         011 13578999999999999999998


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      ...
T Consensus       165 ~~~  167 (169)
T cd04114         165 ACR  167 (169)
T ss_pred             HHH
Confidence            753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04158 ARD1 ARD1 subfamily

Probab=97.92  E-value=2.9e-05  Score=58.60  Aligned_cols=27  Identities=22%  Similarity=0.137  Sum_probs=22.5

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGED   88 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~e   88 (150)
                      +.++.+||++|.|+++++..|.+...+
T Consensus       136 ~~~~~~Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158         136 WYIQGCDARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             EEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence            467889999999999999998765543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.92  E-value=3.9e-05  Score=55.61  Aligned_cols=61  Identities=23%  Similarity=0.379  Sum_probs=41.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+++|+||+|+.+...........   ..                  .+..++...+++++||++|.|++++++.|.
T Consensus       109 ~~~~vi~v~nK~D~~~~~~~~~~~~~~---~~------------------~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~  167 (170)
T cd01876         109 LGIPFLVVLTKADKLKKSELAKALKEI---KK------------------ELKLFEIDPPIILFSSLKGQGIDELRALIE  167 (170)
T ss_pred             cCCCEEEEEEchhcCChHHHHHHHHHH---HH------------------HHHhccCCCceEEEecCCCCCHHHHHHHHH
Confidence            357999999999987654322211111   01                  111134557899999999999999999987


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       168 ~~  169 (170)
T cd01876         168 KW  169 (170)
T ss_pred             Hh
Confidence            64

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.91  E-value=3.6e-05  Score=58.15  Aligned_cols=55  Identities=15%  Similarity=0.110  Sum_probs=38.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|.||+|+..+... .         +...                +.+ ....+++.+||++|.|++++++.|.+
T Consensus       104 ~~piiiv~nK~Dl~~~~~~-~---------~~~~----------------~~~-~~~~~~~e~Sa~~~~~v~~~f~~l~~  156 (166)
T cd00877         104 NIPIVLCGNKVDIKDRKVK-A---------KQIT----------------FHR-KKNLQYYEISAKSNYNFEKPFLWLAR  156 (166)
T ss_pred             CCcEEEEEEchhcccccCC-H---------HHHH----------------HHH-HcCCEEEEEeCCCCCChHHHHHHHHH
Confidence            6899999999998633210 0         0000                001 13568999999999999999999986


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       157 ~~  158 (166)
T cd00877         157 KL  158 (166)
T ss_pred             HH
Confidence            65

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=97.91  E-value=2.8e-05  Score=71.74  Aligned_cols=26  Identities=15%  Similarity=0.185  Sum_probs=22.7

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      ..++++|||++|+|+++|++.|....
T Consensus       140 ~~~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        140 EAKLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence            46899999999999999999887644

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=97.90  E-value=4.2e-05  Score=58.32  Aligned_cols=58  Identities=16%  Similarity=0.152  Sum_probs=38.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+......     +.+   +...        +.+       ++  +.+++.+||++|.|++++|..+.
T Consensus       106 ~~~piilvgNK~Dl~~~~~v-----~~~---~~~~--------~a~-------~~--~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141         106 EDIPLVLVGNKVDLESQRQV-----TTE---EGRN--------LAR-------EF--NCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             CCCCEEEEEEChhhhhcCcc-----CHH---HHHH--------HHH-------Hh--CCEEEEEecCCCCCHHHHHHHHH
Confidence            46899999999998643221     011   0000        101       11  46899999999999999999887


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      ..+
T Consensus       161 ~~~  163 (172)
T cd04141         161 REI  163 (172)
T ss_pred             HHH
Confidence            654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=97.90  E-value=3.5e-05  Score=68.32  Aligned_cols=28  Identities=32%  Similarity=0.407  Sum_probs=24.8

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~ey   89 (150)
                      .++++|||++|+|+++|++.|.+.+.+.
T Consensus       302 ~~i~~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        302 PKVFPISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            5789999999999999999998877654

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=97.90  E-value=3.9e-05  Score=61.28  Aligned_cols=59  Identities=12%  Similarity=0.063  Sum_probs=40.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+......      .+    .+.        +.        . ..+++++.+||++|.|++++|..|.
T Consensus       116 ~~~piilvgNK~Dl~~~~v~------~~----~~~--------~~--------~-~~~~~~~e~SAk~~~~i~~~f~~l~  168 (219)
T PLN03071        116 ENIPIVLCGNKVDVKNRQVK------AK----QVT--------FH--------R-KKNLQYYEISAKSNYNFEKPFLYLA  168 (219)
T ss_pred             CCCcEEEEEEchhhhhccCC------HH----HHH--------HH--------H-hcCCEEEEcCCCCCCCHHHHHHHHH
Confidence            46899999999998543211      00    000        00        0 1246889999999999999999998


Q ss_pred             HHHHHH
Q psy7275          84 LAGEDY   89 (150)
Q Consensus        84 e~~~ey   89 (150)
                      ..+.+.
T Consensus       169 ~~~~~~  174 (219)
T PLN03071        169 RKLAGD  174 (219)
T ss_pred             HHHHcC
Confidence            777544

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.90  E-value=2e-05  Score=56.71  Aligned_cols=58  Identities=16%  Similarity=0.130  Sum_probs=38.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHH-hhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDE-FYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~e-fy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+++|+||+|+.+.....++.       ..+.                +.. .....+++.+||++|.|++++++.|
T Consensus       100 ~~~p~iiv~nK~D~~~~~~~~~~~-------~~~~----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  156 (159)
T cd04159         100 EGIPLLVLGNKNDLPGALSVDELI-------EQMN----------------LKSITDREVSCYSISCKEKTNIDIVLDWL  156 (159)
T ss_pred             cCCCEEEEEeCccccCCcCHHHHH-------HHhC----------------cccccCCceEEEEEEeccCCChHHHHHHH
Confidence            467999999999986543211111       1110                000 0123578999999999999999988


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      .+
T Consensus       157 ~~  158 (159)
T cd04159         157 IK  158 (159)
T ss_pred             hh
Confidence            64

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.90  E-value=3.8e-05  Score=62.95  Aligned_cols=59  Identities=7%  Similarity=-0.021  Sum_probs=39.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+......     ..+.+.+.+.                  . .....++.+||++|.|+++++..|.
T Consensus       112 ~~~piIivgNK~Dl~~~~~v-----~~~ei~~~~~------------------~-~~~~~~~evSAktg~gI~elf~~L~  167 (247)
T cd04143         112 VKIPMVICGNKADRDFPREV-----QRDEVEQLVG------------------G-DENCAYFEVSAKKNSNLDEMFRALF  167 (247)
T ss_pred             CCCcEEEEEECccchhcccc-----CHHHHHHHHH------------------h-cCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            36899999999998642211     1111111111                  0 1246789999999999999999998


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      ...
T Consensus       168 ~~~  170 (247)
T cd04143         168 SLA  170 (247)
T ss_pred             HHh
Confidence            755

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04113 Rab4 Rab4 subfamily

Probab=97.90  E-value=3.5e-05  Score=56.89  Aligned_cols=58  Identities=16%  Similarity=0.111  Sum_probs=38.7

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+++|+||+|+......     +.+......                  .+ + +.+++.+||++|.|+++++..+
T Consensus       103 ~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~------------------~~-~-~~~~~~~Sa~~~~~i~~~~~~~  157 (161)
T cd04113         103 SPNIVVILVGNKSDLADQREV-----TFLEASRFA------------------QE-N-GLLFLETSALTGENVEEAFLKC  157 (161)
T ss_pred             CCCCeEEEEEEchhcchhccC-----CHHHHHHHH------------------HH-c-CCEEEEEECCCCCCHHHHHHHH
Confidence            357899999999998653211     111111110                  11 1 3789999999999999999988


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       158 ~~~  160 (161)
T cd04113         158 ARS  160 (161)
T ss_pred             HHh
Confidence            653

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04116 Rab9 Rab9 subfamily

Probab=97.90  E-value=3e-05  Score=57.91  Aligned_cols=56  Identities=16%  Similarity=0.089  Sum_probs=37.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+......   .   +..++..                  .+ +...+++.+||++|.|+++++..+.
T Consensus       113 ~~~piilv~nK~Dl~~~~~~---~---~~~~~~~------------------~~-~~~~~~~e~Sa~~~~~v~~~~~~~~  167 (170)
T cd04116         113 ESFPFVVLGNKNDIPERQVS---T---EEAQAWC------------------RE-NGDYPYFETSAKDATNVAAAFEEAV  167 (170)
T ss_pred             CCCcEEEEEECccccccccC---H---HHHHHHH------------------HH-CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            46899999999998632211   0   1111111                  11 1224789999999999999999886


Q ss_pred             H
Q psy7275          84 L   84 (150)
Q Consensus        84 e   84 (150)
                      +
T Consensus       168 ~  168 (170)
T cd04116         168 R  168 (170)
T ss_pred             h
Confidence            4

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PRK00098 GTPase RsgA; Reviewed

Probab=97.90  E-value=1.8e-05  Score=66.48  Aligned_cols=53  Identities=25%  Similarity=0.344  Sum_probs=36.2

Q ss_pred             CCCCEEEeeecCCCCCch-hhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHK-YAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~-~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+.. ...+|...+                         ..  .+.+++.+||.+|+|+++|+..+
T Consensus       110 ~~ip~iIVlNK~DL~~~~~~~~~~~~~~-------------------------~~--~g~~v~~vSA~~g~gi~~L~~~l  162 (298)
T PRK00098        110 NGIKPIIVLNKIDLLDDLEEARELLALY-------------------------RA--IGYDVLELSAKEGEGLDELKPLL  162 (298)
T ss_pred             CCCCEEEEEEhHHcCCCHHHHHHHHHHH-------------------------HH--CCCeEEEEeCCCCccHHHHHhhc
Confidence            478999999999996322 112222110                         01  13588999999999999998876


Q ss_pred             H
Q psy7275          83 K   83 (150)
Q Consensus        83 ~   83 (150)
                      .
T Consensus       163 ~  163 (298)
T PRK00098        163 A  163 (298)
T ss_pred             c
Confidence            4

>cd04120 Rab12 Rab12 subfamily

Probab=97.89  E-value=4e-05  Score=60.98  Aligned_cols=59  Identities=5%  Similarity=0.002  Sum_probs=38.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+........     +   +...        +.       .+ ..+..++.+||++|.|++++|..+.
T Consensus       104 ~~~piilVgNK~DL~~~~~v~~-----~---~~~~--------~a-------~~-~~~~~~~etSAktg~gV~e~F~~l~  159 (202)
T cd04120         104 EDAELLLVGNKLDCETDREISR-----Q---QGEK--------FA-------QQ-ITGMRFCEASAKDNFNVDEIFLKLV  159 (202)
T ss_pred             CCCcEEEEEECcccccccccCH-----H---HHHH--------HH-------Hh-cCCCEEEEecCCCCCCHHHHHHHHH
Confidence            3689999999999864322100     0   0000        00       01 1246789999999999999998887


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       160 ~~~  162 (202)
T cd04120         160 DDI  162 (202)
T ss_pred             HHH
Confidence            544

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04177 RSR1 RSR1 subgroup

Probab=97.89  E-value=4.7e-05  Score=57.10  Aligned_cols=59  Identities=8%  Similarity=0.127  Sum_probs=39.3

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|.||+|+.+.....  .      .+...        +        .+-+...+++.+||++|.|+++++..|
T Consensus       104 ~~~~piiiv~nK~D~~~~~~~~--~------~~~~~--------~--------~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177         104 SDNVPMVLVGNKADLEDDRQVS--R------EDGVS--------L--------SQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             CCCCCEEEEEEChhccccCccC--H------HHHHH--------H--------HHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            3578999999999986543210  0      01000        0        111334789999999999999999988


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      ...
T Consensus       160 ~~~  162 (168)
T cd04177         160 VRQ  162 (168)
T ss_pred             HHH
Confidence            653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=97.89  E-value=2.4e-05  Score=63.41  Aligned_cols=50  Identities=18%  Similarity=0.026  Sum_probs=38.0

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      .+|+|+|+||+|+.+.+...                                .+.....++.+||.+|.|++++++.|.+
T Consensus       176 y~p~iiV~NK~Dl~~~~~~~--------------------------------~~~~~~~~~~~SA~~g~gi~~l~~~i~~  223 (233)
T cd01896         176 YIPCLYVYNKIDLISIEELD--------------------------------LLARQPNSVVISAEKGLNLDELKERIWD  223 (233)
T ss_pred             EeeEEEEEECccCCCHHHHH--------------------------------HHhcCCCEEEEcCCCCCCHHHHHHHHHH
Confidence            46999999999997654321                                1112346899999999999999999887


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       224 ~L  225 (233)
T cd01896         224 KL  225 (233)
T ss_pred             Hh
Confidence            54

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=97.89  E-value=2.4e-05  Score=67.45  Aligned_cols=50  Identities=30%  Similarity=0.336  Sum_probs=36.1

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+....           ....                  .  ...+++.|||++|+|+++|++.|.+
T Consensus       301 ~~piIlV~NK~Dl~~~~~v-----------~~~~------------------~--~~~~~i~iSAktg~GI~eL~~~I~~  349 (351)
T TIGR03156       301 DIPQLLVYNKIDLLDEPRI-----------ERLE------------------E--GYPEAVFVSAKTGEGLDLLLEAIAE  349 (351)
T ss_pred             CCCEEEEEEeecCCChHhH-----------HHHH------------------h--CCCCEEEEEccCCCCHHHHHHHHHh
Confidence            6799999999998653221           0000                  0  1236899999999999999999875


Q ss_pred             H
Q psy7275          85 A   85 (150)
Q Consensus        85 ~   85 (150)
                      .
T Consensus       350 ~  350 (351)
T TIGR03156       350 R  350 (351)
T ss_pred             h
Confidence            3

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PTZ00369 Ras-like protein; Provisional

Probab=97.89  E-value=5e-05  Score=58.56  Aligned_cols=57  Identities=14%  Similarity=0.074  Sum_probs=38.1

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|.||+|+.+.....     .+   ++..        +       ...+  ..+++.+||++|.|+++++..+.+
T Consensus       110 ~~piiiv~nK~Dl~~~~~i~-----~~---~~~~--------~-------~~~~--~~~~~e~Sak~~~gi~~~~~~l~~  164 (189)
T PTZ00369        110 RVPMILVGNKCDLDSERQVS-----TG---EGQE--------L-------AKSF--GIPFLETSAKQRVNVDEAFYELVR  164 (189)
T ss_pred             CCCEEEEEECcccccccccC-----HH---HHHH--------H-------HHHh--CCEEEEeeCCCCCCHHHHHHHHHH
Confidence            68999999999985432110     00   0000        0       0111  358899999999999999999976


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       165 ~l  166 (189)
T PTZ00369        165 EI  166 (189)
T ss_pred             HH
Confidence            55

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.89  E-value=3.1e-05  Score=65.76  Aligned_cols=57  Identities=19%  Similarity=0.254  Sum_probs=39.9

Q ss_pred             CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275           6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      .+-|+|+||+|+++....     |.+.+.+.+                  ...++..++++|||++|+|+++|.++|.+.
T Consensus       231 ~ADIVVLNKiDLl~~~~~-----dle~~~~~l------------------r~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNF-----DVEKCIACA------------------REVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHH-----HHHHHHHHH------------------HhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999753210     112222222                  233567899999999999999999998763

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.88  E-value=2.3e-05  Score=59.90  Aligned_cols=52  Identities=19%  Similarity=0.239  Sum_probs=32.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTE   76 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGid   76 (150)
                      .+.|+|+|+||+|+.++...   ....+.+.+.                  +..+....+++++||++|+|++
T Consensus       128 ~~~pviiv~nK~D~~~~~~~---~~~~~~i~~~------------------l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       128 RGIPVLIVLTKADKLKKSEL---NKQLKKIKKA------------------LKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cCCCEEEEEECcccCCHHHH---HHHHHHHHHH------------------HhhccCCCceEEEECCCCCCCC
Confidence            46899999999998754321   1111111111                  1122234589999999999984

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd04128 Spg1 Spg1p

Probab=97.87  E-value=5.1e-05  Score=58.79  Aligned_cols=26  Identities=4%  Similarity=0.075  Sum_probs=23.1

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      .+++.+||++|.|+++++..+.+.+.
T Consensus       141 ~~~~e~SAk~g~~v~~lf~~l~~~l~  166 (182)
T cd04128         141 APLIFCSTSHSINVQKIFKIVLAKAF  166 (182)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999987663

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04149 Arf6 Arf6 subfamily

Probab=97.87  E-value=2.8e-05  Score=59.12  Aligned_cols=56  Identities=20%  Similarity=0.103  Sum_probs=35.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      +.|+|+|+||+|+.+...       .+...+.+.                +.... ....++++||+||+|+++++..|.
T Consensus       110 ~~piilv~NK~Dl~~~~~-------~~~i~~~~~----------------~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         110 DALLLVFANKQDLPDAMK-------PHEIQEKLG----------------LTRIRDRNWYVQPSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             CCcEEEEEECcCCccCCC-------HHHHHHHcC----------------CCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence            579999999999854211       111122211                00001 123678999999999999998875

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=97.87  E-value=3.5e-05  Score=72.81  Aligned_cols=59  Identities=20%  Similarity=0.282  Sum_probs=41.9

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +.++|+|+|+||+|+.......   .|.+.+.+.                     +  +.+++++||.+|+|++++.+.+
T Consensus       110 e~giPvIvVlNK~Dl~~~~~i~---id~~~L~~~---------------------L--G~pVvpiSA~~g~GIdeL~~~I  163 (772)
T PRK09554        110 ELGIPCIVALNMLDIAEKQNIR---IDIDALSAR---------------------L--GCPVIPLVSTRGRGIEALKLAI  163 (772)
T ss_pred             HcCCCEEEEEEchhhhhccCcH---HHHHHHHHH---------------------h--CCCEEEEEeecCCCHHHHHHHH
Confidence            4578999999999986432211   122222211                     1  4699999999999999999999


Q ss_pred             HHHHH
Q psy7275          83 KLAGE   87 (150)
Q Consensus        83 ~e~~~   87 (150)
                      .+...
T Consensus       164 ~~~~~  168 (772)
T PRK09554        164 DRHQA  168 (772)
T ss_pred             HHhhh
Confidence            88653

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=97.87  E-value=3e-05  Score=71.14  Aligned_cols=58  Identities=31%  Similarity=0.263  Sum_probs=40.1

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +.+.|+|+|+||+|+.+.....   .|.+    .+.                  +- -+.+++++||++|+|++++++.+
T Consensus        97 ~~~~PiIIVlNK~Dl~~~~~i~---~d~~----~L~------------------~~-lg~pvv~tSA~tg~Gi~eL~~~i  150 (591)
T TIGR00437        97 ELGIPMILALNLVDEAEKKGIR---IDEE----KLE------------------ER-LGVPVVPTSATEGRGIERLKDAI  150 (591)
T ss_pred             hcCCCEEEEEehhHHHHhCCCh---hhHH----HHH------------------HH-cCCCEEEEECCCCCCHHHHHHHH
Confidence            3578999999999985432211   0111    111                  11 14799999999999999999999


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+..
T Consensus       151 ~~~~  154 (591)
T TIGR00437       151 RKAI  154 (591)
T ss_pred             HHHh
Confidence            8754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01863 Rab18 Rab18 subfamily

Probab=97.87  E-value=5.5e-05  Score=55.71  Aligned_cols=56  Identities=11%  Similarity=0.064  Sum_probs=38.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+++|.||+|+.......   ++...+.                      . ....+++.+||++|.|++++++.+.
T Consensus       105 ~~~~~~iv~nK~D~~~~~~~~---~~~~~~~----------------------~-~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863         105 NDIVKMLVGNKIDKENREVTR---EEGLKFA----------------------R-KHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             CCCcEEEEEECCcccccccCH---HHHHHHH----------------------H-HcCCEEEEEecCCCCCHHHHHHHHH
Confidence            467999999999997332211   1111111                      0 1246899999999999999999876


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            54

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.86  E-value=5.5e-05  Score=63.13  Aligned_cols=57  Identities=19%  Similarity=0.402  Sum_probs=41.4

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|.|+|+||+|+.+.....+|++-++                         +  .+.+++.|||.+|.|+++|.+.+.+
T Consensus        51 ~kp~iiVlNK~DL~~~~~~~~~~~~~~-------------------------~--~~~~vi~vSa~~~~gi~~L~~~l~~  103 (287)
T PRK09563         51 NKPRLLILNKSDLADPEVTKKWIEYFE-------------------------E--QGIKALAINAKKGQGVKKILKAAKK  103 (287)
T ss_pred             CCCEEEEEEchhcCCHHHHHHHHHHHH-------------------------H--cCCeEEEEECCCcccHHHHHHHHHH
Confidence            579999999999976543345542111                         0  1247899999999999999999877


Q ss_pred             HHHH
Q psy7275          85 AGED   88 (150)
Q Consensus        85 ~~~e   88 (150)
                      .+.+
T Consensus       104 ~l~~  107 (287)
T PRK09563        104 LLKE  107 (287)
T ss_pred             HHHH
Confidence            6643

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=97.86  E-value=2.9e-05  Score=56.12  Aligned_cols=51  Identities=18%  Similarity=0.270  Sum_probs=39.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+....             .                   ......+++.+||.+|.|+++|++.|.
T Consensus       106 ~~~~vi~v~nK~D~~~~~~~-------------~-------------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~  153 (157)
T cd04164         106 ADKPIIVVLNKSDLLPDSEL-------------L-------------------SLLAGKPIIAISAKTGEGLDELKEALL  153 (157)
T ss_pred             cCCCEEEEEEchhcCCcccc-------------c-------------------cccCCCceEEEECCCCCCHHHHHHHHH
Confidence            46899999999998764431             0                   012346899999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       154 ~~~  156 (157)
T cd04164         154 ELA  156 (157)
T ss_pred             Hhh
Confidence            653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00101 ureG urease accessory protein UreG

Probab=97.86  E-value=3.7e-05  Score=61.21  Aligned_cols=29  Identities=10%  Similarity=0.109  Sum_probs=24.8

Q ss_pred             HhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275          57 EFYSTLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus        57 efy~~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      .+....+++.+||+||+|++++++.+.+.
T Consensus       166 ~~~~~~~i~~~Sa~~g~gi~el~~~i~~~  194 (199)
T TIGR00101       166 KMRGEKPFIFTNLKTKEGLDTVIDWIEHY  194 (199)
T ss_pred             HhCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34556899999999999999999998854

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01878 HflX HflX subfamily

Probab=97.84  E-value=3.7e-05  Score=59.63  Aligned_cols=51  Identities=27%  Similarity=0.312  Sum_probs=37.4

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+....  +        ...                    .....+++.+||++|.|++++++.|..
T Consensus       153 ~~~viiV~NK~Dl~~~~~~--~--------~~~--------------------~~~~~~~~~~Sa~~~~gi~~l~~~L~~  202 (204)
T cd01878         153 DIPMILVLNKIDLLDDEEL--E--------ERL--------------------EAGRPDAVFISAKTGEGLDELLEAIEE  202 (204)
T ss_pred             CCCEEEEEEccccCChHHH--H--------HHh--------------------hcCCCceEEEEcCCCCCHHHHHHHHHh
Confidence            5799999999999765431  1        000                    012358999999999999999998865


Q ss_pred             H
Q psy7275          85 A   85 (150)
Q Consensus        85 ~   85 (150)
                      .
T Consensus       203 ~  203 (204)
T cd01878         203 L  203 (204)
T ss_pred             h
Confidence            4

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01861 Rab6 Rab6 subfamily

Probab=97.84  E-value=4.2e-05  Score=56.21  Aligned_cols=55  Identities=15%  Similarity=0.093  Sum_probs=37.8

Q ss_pred             CCCEEEeeecCCCCCchh-hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKY-AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~-~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      +.|+|+|.||+|+..+.. ..++.      ...                   ... .+.+++.+||++|.|++++++.+.
T Consensus       105 ~~~iilv~nK~D~~~~~~~~~~~~------~~~-------------------~~~-~~~~~~~~Sa~~~~~v~~l~~~i~  158 (161)
T cd01861         105 DVIIVLVGNKTDLSDKRQVSTEEG------EKK-------------------AKE-LNAMFIETSAKAGHNVKELFRKIA  158 (161)
T ss_pred             CCEEEEEEEChhccccCccCHHHH------HHH-------------------HHH-hCCEEEEEeCCCCCCHHHHHHHHH
Confidence            589999999999854322 11111      000                   011 247899999999999999999987


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       159 ~~  160 (161)
T cd01861         159 SA  160 (161)
T ss_pred             Hh
Confidence            64

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04118 Rab24 Rab24 subfamily

Probab=97.83  E-value=5.7e-05  Score=57.86  Aligned_cols=61  Identities=20%  Similarity=0.216  Sum_probs=38.5

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|.||+|+..+......+ +.+..+.           +       ..++  ..+++.+||++|.|++++++.+.+
T Consensus       105 ~~piilv~nK~Dl~~~~~~~~~v-~~~~~~~-----------~-------~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~  163 (193)
T cd04118         105 HCKIYLCGTKSDLIEQDRSLRQV-DFHDVQD-----------F-------ADEI--KAQHFETSSKTGQNVDELFQKVAE  163 (193)
T ss_pred             CCCEEEEEEcccccccccccCcc-CHHHHHH-----------H-------HHHc--CCeEEEEeCCCCCCHHHHHHHHHH
Confidence            68999999999986542110000 0000000           0       0111  357899999999999999999876


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       164 ~~  165 (193)
T cd04118         164 DF  165 (193)
T ss_pred             HH
Confidence            55

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01871 Rac1_like Rac1-like subfamily

Probab=97.83  E-value=4.2e-05  Score=58.53  Aligned_cols=24  Identities=13%  Similarity=0.206  Sum_probs=21.3

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..+++.+||+||+|++++++.+.+
T Consensus       149 ~~~~~e~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         149 AVKYLECSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             CcEEEEecccccCCHHHHHHHHHH
Confidence            358899999999999999998865

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=97.82  E-value=7.8e-05  Score=55.05  Aligned_cols=57  Identities=19%  Similarity=0.233  Sum_probs=37.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|.||+|+.+......     . ....+.                  . ..+.+++.+||++|.|++++++.+.
T Consensus       106 ~~~p~ilv~nK~Dl~~~~~~~~-----~-~~~~~~------------------~-~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (164)
T cd04101         106 KHMPGVLVGNKMDLADKAEVTD-----A-QAQAFA------------------Q-ANQLKFFKTSALRGVGYEEPFESLA  160 (164)
T ss_pred             CCCCEEEEEECcccccccCCCH-----H-HHHHHH------------------H-HcCCeEEEEeCCCCCChHHHHHHHH
Confidence            3589999999999865432100     0 000000                  0 1135789999999999999999887


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       161 ~~  162 (164)
T cd04101         161 RA  162 (164)
T ss_pred             HH
Confidence            65

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04121 Rab40 Rab40 subfamily

Probab=97.82  E-value=6.7e-05  Score=58.97  Aligned_cols=58  Identities=10%  Similarity=0.057  Sum_probs=38.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|.||+|+.......     .+..++           +.+       .  .+.+++.+||++|.|++++|..+.
T Consensus       109 ~~~piilVGNK~DL~~~~~v~-----~~~~~~-----------~a~-------~--~~~~~~e~SAk~g~~V~~~F~~l~  163 (189)
T cd04121         109 PGVPKILVGNRLHLAFKRQVA-----TEQAQA-----------YAE-------R--NGMTFFEVSPLCNFNITESFTELA  163 (189)
T ss_pred             CCCCEEEEEECccchhccCCC-----HHHHHH-----------HHH-------H--cCCEEEEecCCCCCCHHHHHHHHH
Confidence            468999999999985422110     000000           101       1  246899999999999999999998


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       164 ~~i  166 (189)
T cd04121         164 RIV  166 (189)
T ss_pred             HHH
Confidence            655

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd01873 RhoBTB RhoBTB subfamily

Probab=97.82  E-value=3.4e-05  Score=60.82  Aligned_cols=25  Identities=16%  Similarity=0.090  Sum_probs=21.7

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      +.+++.+||+||+|++++|..+.++
T Consensus       170 ~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         170 GIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            3589999999999999999988653

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.81  E-value=3.5e-05  Score=64.46  Aligned_cols=54  Identities=19%  Similarity=0.188  Sum_probs=37.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|.|+|+||+|+.+......|..       ..                  .  ..+.+++.+||.+|.|+++|...|.
T Consensus       108 ~~ip~iIVlNK~DL~~~~~~~~~~~-------~~------------------~--~~g~~v~~vSA~~g~gi~~L~~~L~  160 (287)
T cd01854         108 AGIEPVIVLTKADLLDDEEEELELV-------EA------------------L--ALGYPVLAVSAKTGEGLDELREYLK  160 (287)
T ss_pred             cCCCEEEEEEHHHCCChHHHHHHHH-------HH------------------H--hCCCeEEEEECCCCccHHHHHhhhc
Confidence            5789999999999976432112210       00                  0  1246899999999999999988776


Q ss_pred             H
Q psy7275          84 L   84 (150)
Q Consensus        84 e   84 (150)
                      .
T Consensus       161 ~  161 (287)
T cd01854         161 G  161 (287)
T ss_pred             c
Confidence            4

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd04126 Rab20 Rab20 subfamily

Probab=97.81  E-value=5.9e-05  Score=60.96  Aligned_cols=26  Identities=15%  Similarity=0.056  Sum_probs=22.6

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      .+++.+||+||.|++++|..+.+.+.
T Consensus       165 ~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         165 KMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            47899999999999999998886553

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04148 RGK RGK subfamily

Probab=97.80  E-value=5.3e-05  Score=60.58  Aligned_cols=59  Identities=17%  Similarity=0.047  Sum_probs=40.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.+.....     .+. ...+                 ...+  +.+++.+||++|.|++++++.+.
T Consensus       105 ~~~piilV~NK~Dl~~~~~v~-----~~~-~~~~-----------------a~~~--~~~~~e~SA~~~~gv~~l~~~l~  159 (221)
T cd04148         105 EDRPIILVGNKSDLARSREVS-----VQE-GRAC-----------------AVVF--DCKFIETSAGLQHNVDELLEGIV  159 (221)
T ss_pred             CCCCEEEEEEChhccccceec-----HHH-HHHH-----------------HHHc--CCeEEEecCCCCCCHHHHHHHHH
Confidence            468999999999986543210     000 0000                 0112  35789999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      ..+.
T Consensus       160 ~~~~  163 (221)
T cd04148         160 RQIR  163 (221)
T ss_pred             HHHH
Confidence            7664

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04110 Rab35 Rab35 subfamily

Probab=97.80  E-value=7.6e-05  Score=58.18  Aligned_cols=59  Identities=14%  Similarity=0.009  Sum_probs=39.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+|+|.||+|+.......     .+   +...        +.       ..  .+.+++.+||++|.|+++++..|.
T Consensus       109 ~~~piivVgNK~Dl~~~~~~~-----~~---~~~~--------~~-------~~--~~~~~~e~Sa~~~~gi~~lf~~l~  163 (199)
T cd04110         109 DDVCKVLVGNKNDDPERKVVE-----TE---DAYK--------FA-------GQ--MGISLFETSAKENINVEEMFNCIT  163 (199)
T ss_pred             CCCCEEEEEECcccccccccC-----HH---HHHH--------HH-------HH--cCCEEEEEECCCCcCHHHHHHHHH
Confidence            357999999999987543210     00   0000        00       01  136899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      ..+-
T Consensus       164 ~~~~  167 (199)
T cd04110         164 ELVL  167 (199)
T ss_pred             HHHH
Confidence            7663

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01860 Rab5_related Rab5-related subfamily

Probab=97.80  E-value=8.7e-05  Score=54.62  Aligned_cols=57  Identities=23%  Similarity=0.158  Sum_probs=38.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+|+|.||+|+.+....     +.+......                  .+ + +.+++.+||++|.|+++++..|.
T Consensus       105 ~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~------------------~~-~-~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd01860         105 PNIIIALVGNKADLESKRQV-----STEEAQEYA------------------DE-N-GLLFFETSAKTGENVNELFTEIA  159 (163)
T ss_pred             CCCeEEEEEECccccccCcC-----CHHHHHHHH------------------HH-c-CCEEEEEECCCCCCHHHHHHHHH
Confidence            46799999999998642211     011001100                  01 1 36899999999999999999987


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       160 ~~  161 (163)
T cd01860         160 KK  161 (163)
T ss_pred             HH
Confidence            65

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.76  E-value=6e-05  Score=69.24  Aligned_cols=62  Identities=21%  Similarity=0.337  Sum_probs=40.3

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|+||+|+.+.+.        +.....+..           .....+.|....+++++||++|+|+++|++.|
T Consensus       185 ~~~vPiIVviNKiDl~~~~~--------e~v~~~L~~-----------~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I  245 (587)
T TIGR00487       185 AANVPIIVAINKIDKPEANP--------DRVKQELSE-----------YGLVPEDWGGDTIFVPVSALTGDGIDELLDMI  245 (587)
T ss_pred             HcCCCEEEEEECcccccCCH--------HHHHHHHHH-----------hhhhHHhcCCCceEEEEECCCCCChHHHHHhh
Confidence            35789999999999865322        111111110           00112234345689999999999999999988


Q ss_pred             H
Q psy7275          83 K   83 (150)
Q Consensus        83 ~   83 (150)
                      .
T Consensus       246 ~  246 (587)
T TIGR00487       246 L  246 (587)
T ss_pred             h
Confidence            6

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.76  E-value=0.00011  Score=51.06  Aligned_cols=58  Identities=21%  Similarity=0.180  Sum_probs=40.2

Q ss_pred             CCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHH
Q psy7275           2 YDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         2 yk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~   81 (150)
                      ...+.|+|+|+||+|+.+........     ....                  . ......+++.+||.+|.|++++++.
T Consensus        99 ~~~~~~~ivv~nk~D~~~~~~~~~~~-----~~~~------------------~-~~~~~~~~~~~s~~~~~~i~~~~~~  154 (157)
T cd00882          99 EGENIPIILVGNKIDLPEERVVSEEE-----LAEQ------------------L-AKELGVPYFETSAKTGENVEELFEE  154 (157)
T ss_pred             ccCCCcEEEEEeccccccccchHHHH-----HHHH------------------H-HhhcCCcEEEEecCCCCChHHHHHH
Confidence            34678999999999997665431110     0000                  0 1124579999999999999999998


Q ss_pred             HH
Q psy7275          82 IK   83 (150)
Q Consensus        82 I~   83 (150)
                      |.
T Consensus       155 l~  156 (157)
T cd00882         155 LA  156 (157)
T ss_pred             Hh
Confidence            75

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01875 RhoG RhoG subfamily

Probab=97.76  E-value=5.6e-05  Score=58.66  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=22.5

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+++.+||++|+|++++|..+.+.+
T Consensus       152 ~~~~e~SAk~g~~v~e~f~~l~~~~  176 (191)
T cd01875         152 VKYLECSALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            5899999999999999999998755

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=97.75  E-value=6.4e-05  Score=65.63  Aligned_cols=59  Identities=19%  Similarity=0.261  Sum_probs=38.4

Q ss_pred             CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275           7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus         7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      |+|+|+||+|+.+.+...+.   ++.+.+.+.           .      .+....+++++||++|+|+++|+++|...
T Consensus       136 ~iIVvvNK~Dl~~~~~~~~~---~~~i~~~l~-----------~------~~~~~~~ii~vSA~~g~gi~~L~e~L~~~  194 (406)
T TIGR03680       136 NIVIVQNKIDLVSKEKALEN---YEEIKEFVK-----------G------TVAENAPIIPVSALHNANIDALLEAIEKF  194 (406)
T ss_pred             eEEEEEEccccCCHHHHHHH---HHHHHhhhh-----------h------cccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence            68999999999765432111   111111111           0      01235689999999999999999998764

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.75  E-value=9.2e-05  Score=57.01  Aligned_cols=56  Identities=25%  Similarity=0.350  Sum_probs=36.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      +..|+|=|+||+|+...+...++.      .+.|.                  .- .--+++.|||.+|+|+++|.+.|.
T Consensus        88 f~~pvIGVITK~Dl~~~~~~i~~a------~~~L~------------------~a-G~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   88 FNKPVIGVITKIDLPSDDANIERA------KKWLK------------------NA-GVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             cCCCEEEEEECccCccchhhHHHH------HHHHH------------------Hc-CCCCeEEEECCCCcCHHHHHHHHh
Confidence            357999999999998322211111      11111                  00 112679999999999999999886


Q ss_pred             H
Q psy7275          84 L   84 (150)
Q Consensus        84 e   84 (150)
                      +
T Consensus       143 ~  143 (143)
T PF10662_consen  143 E  143 (143)
T ss_pred             C
Confidence            4

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd00154 Rab Rab family

Probab=97.75  E-value=9.2e-05  Score=53.05  Aligned_cols=55  Identities=25%  Similarity=0.278  Sum_probs=36.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+++|+||+|+..+...     +.+......                  .+  ...+++.+||.+|.|+++++..|.
T Consensus       104 ~~~p~ivv~nK~D~~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         104 ENIPIILVGNKIDLEDQRQV-----STEEAQQFA------------------KE--NGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             CCCcEEEEEEcccccccccc-----cHHHHHHHH------------------HH--cCCeEEEEecCCCCCHHHHHHHHh
Confidence            36899999999998632221     011111110                  11  246899999999999999999875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=97.75  E-value=7.3e-05  Score=56.80  Aligned_cols=57  Identities=23%  Similarity=0.226  Sum_probs=36.3

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ++|+++|+||+|+.+...       .+.+.+.+....             ..+  ...+++++||++|+|+++++..|.
T Consensus       116 ~~p~viv~NK~Dl~~~~~-------~~~i~~~l~~~~-------------~~~--~~~~~~~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         116 KAVLLVLANKQDLKGAMT-------PAEISESLGLTS-------------IRD--HTWHIQGCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             CCCEEEEEECCCCCCCCC-------HHHHHHHhCccc-------------ccC--CceEEEecccCCCCCHHHHHHHHh
Confidence            579999999999864211       111222221000             000  134789999999999999999875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd01866 Rab2 Rab2 subfamily

Probab=97.75  E-value=0.00014  Score=54.62  Aligned_cols=57  Identities=12%  Similarity=0.017  Sum_probs=38.5

Q ss_pred             CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+|+|.||+|+...... .+..      ..           +       ...  ....++.+||++|+|+++++..+
T Consensus       108 ~~~pvivv~nK~Dl~~~~~~~~~~~------~~-----------~-------~~~--~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866         108 SNMTIMLIGNKCDLESRREVSYEEG------EA-----------F-------AKE--HGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             CCCcEEEEEECcccccccCCCHHHH------HH-----------H-------HHH--cCCEEEEEeCCCCCCHHHHHHHH
Confidence            36899999999998643211 1111      00           0       001  14678999999999999999888


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       162 ~~~~  165 (168)
T cd01866         162 AKEI  165 (168)
T ss_pred             HHHH
Confidence            7665

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd00879 Sar1 Sar1 subfamily

Probab=97.75  E-value=3.1e-05  Score=59.07  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      .+++.+||++|+|+++++..+.+
T Consensus       166 ~~~~~~Sa~~~~gv~e~~~~l~~  188 (190)
T cd00879         166 IEVFMCSVVKRQGYGEAFRWLSQ  188 (190)
T ss_pred             EEEEEeEecCCCChHHHHHHHHh
Confidence            47899999999999999998865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04133 Rop_like Rop subfamily

Probab=97.75  E-value=6.6e-05  Score=58.30  Aligned_cols=24  Identities=8%  Similarity=0.027  Sum_probs=21.9

Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          63 KVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        63 ~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .++.+||++|.|++++|..+.+.+
T Consensus       149 ~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         149 AYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             EEEECCCCcccCHHHHHHHHHHHH
Confidence            689999999999999999998765

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PLN03110 Rab GTPase; Provisional

Probab=97.74  E-value=0.00012  Score=58.18  Aligned_cols=60  Identities=20%  Similarity=0.112  Sum_probs=40.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.......+     +. ...+                  .. ...++++.+||++|.|++++++.|.
T Consensus       116 ~~~piiiv~nK~Dl~~~~~~~~-----~~-~~~l------------------~~-~~~~~~~e~SA~~g~~v~~lf~~l~  170 (216)
T PLN03110        116 SNIVIMMAGNKSDLNHLRSVAE-----ED-GQAL------------------AE-KEGLSFLETSALEATNVEKAFQTIL  170 (216)
T ss_pred             CCCeEEEEEEChhcccccCCCH-----HH-HHHH------------------HH-HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            3689999999999854322100     00 0111                  11 1257999999999999999999987


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      ..+.+
T Consensus       171 ~~i~~  175 (216)
T PLN03110        171 LEIYH  175 (216)
T ss_pred             HHHHH
Confidence            76644

>cd04103 Centaurin_gamma Centaurin gamma

Probab=97.73  E-value=4.6e-05  Score=57.65  Aligned_cols=24  Identities=13%  Similarity=0.025  Sum_probs=21.3

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ...++.+||++|.|++++|..+.+
T Consensus       133 ~~~~~e~SAk~~~~i~~~f~~~~~  156 (158)
T cd04103         133 RCSYYETCATYGLNVERVFQEAAQ  156 (158)
T ss_pred             CCcEEEEecCCCCCHHHHHHHHHh
Confidence            468999999999999999998864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd00876 Ras Ras family

Probab=97.73  E-value=0.0001  Score=53.54  Aligned_cols=57  Identities=18%  Similarity=0.163  Sum_probs=38.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+++|.||+|+......     +.+   .+..        +       ...  ...+++.+||++|.|++++++.|.
T Consensus       103 ~~~p~ivv~nK~D~~~~~~~-----~~~---~~~~--------~-------~~~--~~~~~~~~S~~~~~~i~~l~~~l~  157 (160)
T cd00876         103 EDIPIVLVGNKCDLENERQV-----SKE---EGKA--------L-------AKE--WGCPFIETSAKDNINIDEVFKLLV  157 (160)
T ss_pred             CCCcEEEEEECCccccccee-----cHH---HHHH--------H-------HHH--cCCcEEEeccCCCCCHHHHHHHHH
Confidence            46899999999998753221     011   1110        0       001  126899999999999999999987


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      ..
T Consensus       158 ~~  159 (160)
T cd00876         158 RE  159 (160)
T ss_pred             hh
Confidence            53

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.73  E-value=0.00013  Score=57.97  Aligned_cols=58  Identities=12%  Similarity=0.067  Sum_probs=40.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+......      .+.    +.        +.        . ..++.++.+||++|+|++++|..|.
T Consensus        98 ~~~piilvgNK~Dl~~~~v~------~~~----~~--------~~--------~-~~~~~~~e~SAk~~~~v~~~F~~l~  150 (200)
T smart00176       98 ENIPIVLCGNKVDVKDRKVK------AKS----IT--------FH--------R-KKNLQYYDISAKSNYNFEKPFLWLA  150 (200)
T ss_pred             CCCCEEEEEECcccccccCC------HHH----HH--------HH--------H-HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            46899999999998542210      011    00        00        0 1357899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      ..+.+
T Consensus       151 ~~i~~  155 (200)
T smart00176      151 RKLIG  155 (200)
T ss_pred             HHHHh
Confidence            77644

Ran is involved in the active transport of proteins through nuclear pores.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=97.72  E-value=5.8e-05  Score=58.26  Aligned_cols=60  Identities=15%  Similarity=0.097  Sum_probs=38.0

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      +.|+|+|+||+|+......       +.+...+.                ++.+ .....++.+||+||.|++++++.|.
T Consensus       118 ~~piilv~NK~Dl~~~~~~-------~~i~~~l~----------------~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~  174 (182)
T PTZ00133        118 DAVLLVFANKQDLPNAMST-------TEVTEKLG----------------LHSVRQRNWYIQGCCATTAQGLYEGLDWLS  174 (182)
T ss_pred             CCCEEEEEeCCCCCCCCCH-------HHHHHHhC----------------CCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence            5799999999998543211       11112211                0001 1123566899999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       175 ~~i~  178 (182)
T PTZ00133        175 ANIK  178 (182)
T ss_pred             HHHH
Confidence            7553

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.72  E-value=0.00011  Score=63.95  Aligned_cols=63  Identities=22%  Similarity=0.215  Sum_probs=41.7

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|.|+|+||+|+...+.      .++.+..++.                  +.......++|||.|++|+++|...+.+
T Consensus       275 ~K~~ivv~NKiD~~~~~e------~~~~~~~~l~------------------~~~~~~~~~~ISa~t~~g~~~L~~~~~~  330 (369)
T COG0536         275 EKPRIVVLNKIDLPLDEE------ELEELKKALA------------------EALGWEVFYLISALTREGLDELLRALAE  330 (369)
T ss_pred             cCceEEEEeccCCCcCHH------HHHHHHHHHH------------------HhcCCCcceeeehhcccCHHHHHHHHHH
Confidence            459999999999654432      1223333332                  1111223333999999999999999999


Q ss_pred             HHHHHHh
Q psy7275          85 AGEDYEK   91 (150)
Q Consensus        85 ~~~ey~~   91 (150)
                      .++++..
T Consensus       331 ~l~~~~~  337 (369)
T COG0536         331 LLEETKA  337 (369)
T ss_pred             HHHHhhh
Confidence            8877653

>KOG1489|consensus

Probab=97.71  E-value=4.4e-05  Score=66.09  Aligned_cols=54  Identities=30%  Similarity=0.369  Sum_probs=36.4

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|.++|.||+|+.+.+.      +   +          .++|.+.        ..+..+++|||++|+|+.+|+..+.+
T Consensus       312 ~rp~liVaNKiD~~eae~------~---~----------l~~L~~~--------lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  312 DRPALIVANKIDLPEAEK------N---L----------LSSLAKR--------LQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             cCceEEEEeccCchhHHH------H---H----------HHHHHHH--------cCCCcEEEeeeccccchHHHHHHHhh
Confidence            459999999999853221      0   1          1111111        12335999999999999999998865


Q ss_pred             H
Q psy7275          85 A   85 (150)
Q Consensus        85 ~   85 (150)
                      .
T Consensus       365 ~  365 (366)
T KOG1489|consen  365 L  365 (366)
T ss_pred             c
Confidence            3

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.71  E-value=0.00012  Score=65.53  Aligned_cols=71  Identities=25%  Similarity=0.281  Sum_probs=50.5

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +.+.|.|+|+||.|+...+..  -|   +.+...+..               .-.|....++++|||.+|.|++.+++++
T Consensus       287 ~~g~~~vIvvNKWDl~~~~~~--~~---~~~k~~i~~---------------~l~~l~~a~i~~iSA~~~~~i~~l~~~i  346 (444)
T COG1160         287 EAGRGIVIVVNKWDLVEEDEA--TM---EEFKKKLRR---------------KLPFLDFAPIVFISALTGQGLDKLFEAI  346 (444)
T ss_pred             HcCCCeEEEEEccccCCchhh--HH---HHHHHHHHH---------------HhccccCCeEEEEEecCCCChHHHHHHH
Confidence            567899999999999876321  11   122222221               1134445699999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy7275          83 KLAGEDYEKNY   93 (150)
Q Consensus        83 ~e~~~ey~~~y   93 (150)
                      .++.+.+..--
T Consensus       347 ~~~~~~~~~ri  357 (444)
T COG1160         347 KEIYECATRRI  357 (444)
T ss_pred             HHHHHHhcccc
Confidence            99998886544

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=97.71  E-value=0.0001  Score=57.07  Aligned_cols=61  Identities=15%  Similarity=0.083  Sum_probs=33.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~   81 (150)
                      .++|+|+|+||+|+...... .-.   +.+.+.+.           .+.... + ..+.+++++||++|.|++++...
T Consensus       116 ~~~p~iiv~NK~Dl~~~~~~-~~~---~~~~~~~~-----------~~~~~~-~-~~~~~iv~~Sa~~g~~~~~~~~~  176 (194)
T cd01891         116 LGLKPIVVINKIDRPDARPE-EVV---DEVFDLFI-----------ELGATE-E-QLDFPVLYASAKNGWASLNLEDP  176 (194)
T ss_pred             cCCCEEEEEECCCCCCCCHH-HHH---HHHHHHHH-----------HhCCcc-c-cCccCEEEeehhccccccccccc
Confidence            47899999999999654321 001   11111100           000000 0 11468999999999998666443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=97.70  E-value=7e-05  Score=65.68  Aligned_cols=59  Identities=17%  Similarity=0.281  Sum_probs=37.9

Q ss_pred             CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275           7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus         7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      |+|+|+||+|+.+.+...+   .++.+.+.+.           .      .+....+++++||++|+|+++|++.|...
T Consensus       141 ~iiVVlNK~Dl~~~~~~~~---~~~~i~~~l~-----------~------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~  199 (411)
T PRK04000        141 NIVIVQNKIDLVSKERALE---NYEQIKEFVK-----------G------TVAENAPIIPVSALHKVNIDALIEAIEEE  199 (411)
T ss_pred             cEEEEEEeeccccchhHHH---HHHHHHHHhc-----------c------ccCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence            6899999999976443211   1111111111           0      01234689999999999999999988754

>cd04111 Rab39 Rab39 subfamily

Probab=97.70  E-value=0.00015  Score=57.51  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=24.5

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey   89 (150)
                      +..++.+||++|.|++++++.|.+.+.+.
T Consensus       140 ~~~~~e~Sak~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         140 GMKYIETSARTGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            37899999999999999999998765443

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04125 RabA_like RabA-like subfamily

Probab=97.69  E-value=0.00019  Score=54.93  Aligned_cols=26  Identities=15%  Similarity=0.043  Sum_probs=23.2

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      +++++.+||++|.|+++++..+.+.+
T Consensus       136 ~~~~~evSa~~~~~i~~~f~~l~~~~  161 (188)
T cd04125         136 NIPFFETSAKQSINVEEAFILLVKLI  161 (188)
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            45899999999999999999988765

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=97.69  E-value=0.00011  Score=54.59  Aligned_cols=58  Identities=14%  Similarity=0.137  Sum_probs=37.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCC-CCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSG-EGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TG-eGideL~~~I   82 (150)
                      .++|+|+|.||+|+......   -  .+   ++..        +       ..++  +.+++.+||++| .|++++|..+
T Consensus       105 ~~~piilv~nK~Dl~~~~~v---~--~~---~~~~--------~-------~~~~--~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146         105 REIPVILVGNKADLLHYRQV---S--TE---EGEK--------L-------ASEL--GCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             CCCCEEEEEECCchHHhCcc---C--HH---HHHH--------H-------HHHc--CCEEEEeCCCCCchhHHHHHHHH
Confidence            47899999999998532211   0  00   0000        0       0111  357899999999 5999999998


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       160 ~~~~  163 (165)
T cd04146         160 CREV  163 (165)
T ss_pred             HHHH
Confidence            7654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=97.69  E-value=0.00011  Score=55.50  Aligned_cols=22  Identities=14%  Similarity=0.256  Sum_probs=20.0

Q ss_pred             cEEEeecCCCCCHHHHHHHHHH
Q psy7275          63 KVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus        63 ~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +++.+||++|.|++++++.+.-
T Consensus       150 ~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         150 EYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHh
Confidence            8999999999999999988753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.67  E-value=7.2e-05  Score=60.63  Aligned_cols=55  Identities=22%  Similarity=0.240  Sum_probs=38.8

Q ss_pred             EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275           8 YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus         8 ~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      =|+|+||+|+.+.-.+     |.+.+.+..                  .+..+..+++.+|++||+|+++++..+...
T Consensus       145 DllVInK~DLa~~v~~-----dlevm~~da------------------~~~np~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         145 DLLVINKTDLAPYVGA-----DLEVMARDA------------------KEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             eEEEEehHHhHHHhCc-----cHHHHHHHH------------------HHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence            3789999999764322     222222222                  234678899999999999999998877653

>KOG1145|consensus

Probab=97.65  E-value=0.00014  Score=66.95  Aligned_cols=65  Identities=22%  Similarity=0.296  Sum_probs=47.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+|+++||||..+.+.        +.....|.           ++.++++++..+.++|+|||+||+|++.|.++|.
T Consensus       252 A~VpiVvAinKiDkp~a~p--------ekv~~eL~-----------~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eail  312 (683)
T KOG1145|consen  252 ANVPIVVAINKIDKPGANP--------EKVKRELL-----------SQGIVVEDLGGDVQVIPISALTGENLDLLEEAIL  312 (683)
T ss_pred             cCCCEEEEEeccCCCCCCH--------HHHHHHHH-----------HcCccHHHcCCceeEEEeecccCCChHHHHHHHH
Confidence            4679999999999765432        22222221           2234677888889999999999999999999987


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      -.++
T Consensus       313 l~Ae  316 (683)
T KOG1145|consen  313 LLAE  316 (683)
T ss_pred             HHHH
Confidence            5543

>cd01884 EF_Tu EF-Tu subfamily

Probab=97.64  E-value=0.00021  Score=56.64  Aligned_cols=53  Identities=15%  Similarity=0.303  Sum_probs=31.2

Q ss_pred             CCCCC-EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-h--cCCcEEEeecCCCCCH
Q psy7275           3 DTGFP-YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-Y--STLKVVGFSSVSGEGT   75 (150)
Q Consensus         3 k~~lP-~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y--~~l~vv~VSA~TGeGi   75 (150)
                      +.++| +|+|+||+|+...+...+++      .+.+.       .       .+..+ |  .++++++|||++|.++
T Consensus       115 ~~~~~~iIvviNK~D~~~~~~~~~~~------~~~i~-------~-------~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         115 QVGVPYIVVFLNKADMVDDEELLELV------EMEVR-------E-------LLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HcCCCcEEEEEeCCCCCCcHHHHHHH------HHHHH-------H-------HHHHhcccccCCeEEEeeCccccCC
Confidence            35677 78999999987433222211      11111       0       11111 1  2479999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.62  E-value=0.00011  Score=69.72  Aligned_cols=63  Identities=27%  Similarity=0.357  Sum_probs=40.9

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|+||+|+.+.+.        +.....+..           .....+++....++++|||++|+|+++|++.|
T Consensus       387 ~~~vPiIVviNKiDl~~a~~--------e~V~~eL~~-----------~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I  447 (787)
T PRK05306        387 AAGVPIIVAINKIDKPGANP--------DRVKQELSE-----------YGLVPEEWGGDTIFVPVSAKTGEGIDELLEAI  447 (787)
T ss_pred             hcCCcEEEEEECccccccCH--------HHHHHHHHH-----------hcccHHHhCCCceEEEEeCCCCCCchHHHHhh
Confidence            35789999999999965332        111111110           00012233345789999999999999999988


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      ..
T Consensus       448 ~~  449 (787)
T PRK05306        448 LL  449 (787)
T ss_pred             hh
Confidence            64

>PRK11058 GTPase HflX; Provisional

Probab=97.61  E-value=0.00016  Score=64.09  Aligned_cols=24  Identities=25%  Similarity=0.207  Sum_probs=21.7

Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          64 VVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        64 vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      ++.|||++|+|+++|++.|.+.+.
T Consensus       339 ~v~ISAktG~GIdeL~e~I~~~l~  362 (426)
T PRK11058        339 RVWLSAQTGAGIPLLFQALTERLS  362 (426)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHhh
Confidence            588999999999999999988764

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.61  E-value=0.00042  Score=58.34  Aligned_cols=41  Identities=27%  Similarity=0.313  Sum_probs=30.4

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEK  104 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~ey~~~y~pe~e~~~~~~  104 (150)
                      .+++.+||.+|+|+++|.++|.+..+-..+.  .+++++|.++
T Consensus       205 ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s--g~~~~rr~~q  245 (266)
T PF03308_consen  205 PPVLKTSALEGEGIDELWEAIDEHRDYLKES--GELEERRREQ  245 (266)
T ss_dssp             -EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT--THHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc--chHHHHHHHH
Confidence            5999999999999999999999887665543  2344444433

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PLN03118 Rab family protein; Provisional

Probab=97.60  E-value=0.00029  Score=55.25  Aligned_cols=58  Identities=16%  Similarity=0.082  Sum_probs=38.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.......     .+   +...        +.       .+  ....++.+||++|.|+++++..|.
T Consensus       119 ~~~~~ilv~NK~Dl~~~~~i~-----~~---~~~~--------~~-------~~--~~~~~~e~SAk~~~~v~~l~~~l~  173 (211)
T PLN03118        119 QDCVKMLVGNKVDRESERDVS-----RE---EGMA--------LA-------KE--HGCLFLECSAKTRENVEQCFEELA  173 (211)
T ss_pred             CCCCEEEEEECccccccCccC-----HH---HHHH--------HH-------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            357999999999986432210     00   0000        00       01  135789999999999999999998


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      ..+
T Consensus       174 ~~~  176 (211)
T PLN03118        174 LKI  176 (211)
T ss_pred             HHH
Confidence            776

>cd04117 Rab15 Rab15 subfamily

Probab=97.58  E-value=0.00018  Score=53.80  Aligned_cols=57  Identities=11%  Similarity=0.084  Sum_probs=37.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||.|+........        .++..        +        .+-+ +.+++.+||++|.|+++++..|.
T Consensus       104 ~~~~iilvgnK~Dl~~~~~v~~--------~~~~~--------~--------~~~~-~~~~~e~Sa~~~~~v~~~f~~l~  158 (161)
T cd04117         104 EGVQKILIGNKADEEQKRQVGD--------EQGNK--------L--------AKEY-GMDFFETSACTNSNIKESFTRLT  158 (161)
T ss_pred             CCCeEEEEEECcccccccCCCH--------HHHHH--------H--------HHHc-CCEEEEEeCCCCCCHHHHHHHHH
Confidence            3689999999999864332100        01100        0        0111 36789999999999999999887


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       159 ~~  160 (161)
T cd04117         159 EL  160 (161)
T ss_pred             hh
Confidence            53

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.55  E-value=0.00018  Score=67.95  Aligned_cols=64  Identities=20%  Similarity=0.275  Sum_probs=41.3

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|+||+|+.+.+.        +.....+...           .+..+++....++++|||++|.|+++|++.|
T Consensus       345 ~~~iPiIVViNKiDl~~~~~--------e~v~~eL~~~-----------~ll~e~~g~~vpvv~VSAktG~GIdeLle~I  405 (742)
T CHL00189        345 AANVPIIVAINKIDKANANT--------ERIKQQLAKY-----------NLIPEKWGGDTPMIPISASQGTNIDKLLETI  405 (742)
T ss_pred             hcCceEEEEEECCCccccCH--------HHHHHHHHHh-----------ccchHhhCCCceEEEEECCCCCCHHHHHHhh
Confidence            35789999999999865432        1111221100           0011223334689999999999999999988


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      ...
T Consensus       406 ~~l  408 (742)
T CHL00189        406 LLL  408 (742)
T ss_pred             hhh
Confidence            665

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.54  E-value=0.00013  Score=67.92  Aligned_cols=77  Identities=27%  Similarity=0.238  Sum_probs=55.1

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+++|++|.....-.   -=|.+.+++.+                       +.++|++||++|.|+++++.++
T Consensus       106 E~g~p~ilaLNm~D~A~~~Gi---~ID~~~L~~~L-----------------------GvPVv~tvA~~g~G~~~l~~~i  159 (653)
T COG0370         106 ELGIPMILALNMIDEAKKRGI---RIDIEKLSKLL-----------------------GVPVVPTVAKRGEGLEELKRAI  159 (653)
T ss_pred             HcCCCeEEEeccHhhHHhcCC---cccHHHHHHHh-----------------------CCCEEEEEeecCCCHHHHHHHH
Confidence            468899999999997543221   11333333322                       5899999999999999999999


Q ss_pred             HHHHH----HHHhhhHHHHHHHHHHHH
Q psy7275          83 KLAGE----DYEKNYRVEWIRLRDEKA  105 (150)
Q Consensus        83 ~e~~~----ey~~~y~pe~e~~~~~~~  105 (150)
                      .+..+    .+.-.|.+++|+..++-+
T Consensus       160 ~~~~~~~~~~~~~~y~~~ie~~i~~l~  186 (653)
T COG0370         160 IELAESKTTPREVDYGEEIEEEIKELE  186 (653)
T ss_pred             HHhccccccccccccchHHHHHHHHHH
Confidence            87553    344677777777766554

>PRK01889 GTPase RsgA; Reviewed

Probab=97.54  E-value=0.00023  Score=61.51  Aligned_cols=54  Identities=17%  Similarity=0.306  Sum_probs=36.4

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|.|+|+||+|+.+...  ++...+   .                      .+..+.+++.|||.+|.|+++|...|
T Consensus       140 ~~~i~piIVLNK~DL~~~~~--~~~~~~---~----------------------~~~~g~~Vi~vSa~~g~gl~~L~~~L  192 (356)
T PRK01889        140 ESGAEPVIVLTKADLCEDAE--EKIAEV---E----------------------ALAPGVPVLAVSALDGEGLDVLAAWL  192 (356)
T ss_pred             HcCCCEEEEEEChhcCCCHH--HHHHHH---H----------------------HhCCCCcEEEEECCCCccHHHHHHHh
Confidence            46789999999999976421  121111   0                      11224588888999999988888887


Q ss_pred             H
Q psy7275          83 K   83 (150)
Q Consensus        83 ~   83 (150)
                      .
T Consensus       193 ~  193 (356)
T PRK01889        193 S  193 (356)
T ss_pred             h
Confidence            5

>PLN03108 Rab family protein; Provisional

Probab=97.53  E-value=0.00046  Score=54.49  Aligned_cols=57  Identities=14%  Similarity=0.041  Sum_probs=37.5

Q ss_pred             CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..+|+|+|+||+|+...... .+..   +   +.                  ..+  .+++++.+||++|.|++++|..+
T Consensus       110 ~~~piiiv~nK~Dl~~~~~~~~~~~---~---~~------------------~~~--~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108        110 ANMTIMLIGNKCDLAHRRAVSTEEG---E---QF------------------AKE--HGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             CCCcEEEEEECccCccccCCCHHHH---H---HH------------------HHH--cCCEEEEEeCCCCCCHHHHHHHH
Confidence            36899999999998653221 0100   0   00                  011  14689999999999999998777


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      ...+
T Consensus       164 ~~~~  167 (210)
T PLN03108        164 AAKI  167 (210)
T ss_pred             HHHH
Confidence            6443

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=97.53  E-value=0.00025  Score=57.97  Aligned_cols=24  Identities=13%  Similarity=0.155  Sum_probs=21.1

Q ss_pred             cEEEeecCCCC-CHHHHHHHHHHHH
Q psy7275          63 KVVGFSSVSGE-GTEELLQLIKLAG   86 (150)
Q Consensus        63 ~vv~VSA~TGe-GideL~~~I~e~~   86 (150)
                      .++.+||+||+ |++++|..+....
T Consensus       163 ~~~EtSAktg~~~V~e~F~~~~~~~  187 (232)
T cd04174         163 VYLECSAFTSEKSIHSIFRSASLLC  187 (232)
T ss_pred             EEEEccCCcCCcCHHHHHHHHHHHH
Confidence            57899999998 8999999987755

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.53  E-value=0.0002  Score=55.08  Aligned_cols=58  Identities=24%  Similarity=0.290  Sum_probs=40.2

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +.|+++++||.|+.++...       +.+.+.+.                +++..  ....++.+||.+|+|+.+.++.|
T Consensus       115 ~~piLIl~NK~D~~~~~~~-------~~i~~~l~----------------l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL  171 (175)
T PF00025_consen  115 DIPILILANKQDLPDAMSE-------EEIKEYLG----------------LEKLKNKRPWSVFSCSAKTGEGVDEGLEWL  171 (175)
T ss_dssp             TSEEEEEEESTTSTTSSTH-------HHHHHHTT----------------GGGTTSSSCEEEEEEBTTTTBTHHHHHHHH
T ss_pred             cceEEEEeccccccCcchh-------hHHHhhhh----------------hhhcccCCceEEEeeeccCCcCHHHHHHHH
Confidence            5799999999998764321       11222221                11121  35689999999999999999998


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       172 ~~~  174 (175)
T PF00025_consen  172 IEQ  174 (175)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.53  E-value=0.0002  Score=61.86  Aligned_cols=57  Identities=30%  Similarity=0.447  Sum_probs=38.1

Q ss_pred             CCCEEEeeecCCCCCchh----hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKY----AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~----~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~   79 (150)
                      ..|+|+|+||+|+.+.+.    ..+|+.++      .                  .++ +....++.+||++|.|+++|+
T Consensus        90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~------~------------------k~~g~~~~~i~~vSAk~g~gv~eL~  145 (360)
T TIGR03597        90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKR------A------------------KELGLKPVDIILVSAKKGNGIDELL  145 (360)
T ss_pred             CCCEEEEEEchhhCCCCCCHHHHHHHHHHH------H------------------HHcCCCcCcEEEecCCCCCCHHHHH
Confidence            569999999999975432    23343211      0                  011 111258899999999999999


Q ss_pred             HHHHHH
Q psy7275          80 QLIKLA   85 (150)
Q Consensus        80 ~~I~e~   85 (150)
                      ..|.+.
T Consensus       146 ~~l~~~  151 (360)
T TIGR03597       146 DKIKKA  151 (360)
T ss_pred             HHHHHH
Confidence            998653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=97.52  E-value=0.0002  Score=55.80  Aligned_cols=24  Identities=17%  Similarity=0.357  Sum_probs=21.4

Q ss_pred             CcEEEeecCCCCC-HHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEG-TEELLQLIKLA   85 (150)
Q Consensus        62 l~vv~VSA~TGeG-ideL~~~I~e~   85 (150)
                      .+++.+||+||+| ++++|..+.++
T Consensus       154 ~~~~E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         154 ATYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             CEEEECCcCCCCCCHHHHHHHHHHH
Confidence            4789999999998 99999988774

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=97.52  E-value=0.00012  Score=56.31  Aligned_cols=25  Identities=24%  Similarity=0.147  Sum_probs=21.8

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      ...++++||++|+|++++++.|.+.
T Consensus       159 ~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      159 PLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             eeEEEEeecccCCChHHHHHHHHhh
Confidence            4579999999999999999998653

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=97.51  E-value=0.00015  Score=64.27  Aligned_cols=52  Identities=23%  Similarity=0.208  Sum_probs=40.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.....             .                    ....+++.|||++|.|+++|++.|.
T Consensus       320 ~~~piiiV~NK~DL~~~~~~~-------------~--------------------~~~~~~i~iSAktg~GI~~L~~~L~  366 (449)
T PRK05291        320 KDKPVIVVLNKADLTGEIDLE-------------E--------------------ENGKPVIRISAKTGEGIDELREAIK  366 (449)
T ss_pred             CCCCcEEEEEhhhccccchhh-------------h--------------------ccCCceEEEEeeCCCCHHHHHHHHH
Confidence            367999999999996543210             0                    1235789999999999999999999


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+..
T Consensus       367 ~~l~~  371 (449)
T PRK05291        367 ELAFG  371 (449)
T ss_pred             HHHhh
Confidence            88754

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=97.50  E-value=0.00011  Score=58.52  Aligned_cols=54  Identities=17%  Similarity=0.284  Sum_probs=31.3

Q ss_pred             CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-h--cCCcEEEeecCCCCCHH
Q psy7275           6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-Y--STLKVVGFSSVSGEGTE   76 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y--~~l~vv~VSA~TGeGid   76 (150)
                      .|+|+|+||+|+..++...+   +++.+.+.+..              .+..+ +  ...++++|||++|+|++
T Consensus       138 ~~iiivvNK~Dl~~~~~~~~---~~~~i~~~l~~--------------~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         138 KQLIVAVNKMDDVTVNWSEE---RYDEIKKELSP--------------FLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             CeEEEEEEccccccccccHH---HHHHHHHHHHH--------------HHHHcCCCcCCceEEEeecCcCCCCC
Confidence            47899999999975321111   12222222210              11121 1  13689999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.49  E-value=0.00012  Score=65.35  Aligned_cols=56  Identities=25%  Similarity=0.221  Sum_probs=42.3

Q ss_pred             CCCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcC--CcEEEeecCCCCCHHHH
Q psy7275           1 MYDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYST--LKVVGFSSVSGEGTEEL   78 (150)
Q Consensus         1 lyk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~--l~vv~VSA~TGeGideL   78 (150)
                      |++.+.|+|+|+||+|-...+..                               ..|||+-  -++++|||.-|.|+++|
T Consensus       108 Lr~~~kpviLvvNK~D~~~~e~~-------------------------------~~efyslG~g~~~~ISA~Hg~Gi~dL  156 (444)
T COG1160         108 LRRSKKPVILVVNKIDNLKAEEL-------------------------------AYEFYSLGFGEPVPISAEHGRGIGDL  156 (444)
T ss_pred             HHhcCCCEEEEEEcccCchhhhh-------------------------------HHHHHhcCCCCceEeehhhccCHHHH
Confidence            45677899999999997532210                               1244432  38999999999999999


Q ss_pred             HHHHHHHHH
Q psy7275          79 LQLIKLAGE   87 (150)
Q Consensus        79 ~~~I~e~~~   87 (150)
                      +++|.+.+.
T Consensus       157 ld~v~~~l~  165 (444)
T COG1160         157 LDAVLELLP  165 (444)
T ss_pred             HHHHHhhcC
Confidence            999998863

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=97.49  E-value=0.00019  Score=64.32  Aligned_cols=58  Identities=17%  Similarity=0.137  Sum_probs=43.7

Q ss_pred             CCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHH
Q psy7275           2 YDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         2 yk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~   81 (150)
                      .+.+.|+|+|.||+|+.+..+..           .+                   +.....+++.|||+||+|++.|.++
T Consensus       321 ~~~~~~~i~v~NK~DL~~~~~~~-----------~~-------------------~~~~~~~~i~iSa~t~~Gl~~L~~~  370 (454)
T COG0486         321 LPKKKPIIVVLNKADLVSKIELE-----------SE-------------------KLANGDAIISISAKTGEGLDALREA  370 (454)
T ss_pred             cccCCCEEEEEechhcccccccc-----------hh-------------------hccCCCceEEEEecCccCHHHHHHH
Confidence            35678999999999998765420           00                   1123457999999999999999999


Q ss_pred             HHHHHHHH
Q psy7275          82 IKLAGEDY   89 (150)
Q Consensus        82 I~e~~~ey   89 (150)
                      |......-
T Consensus       371 i~~~~~~~  378 (454)
T COG0486         371 IKQLFGKG  378 (454)
T ss_pred             HHHHHhhc
Confidence            99887544

>cd04131 Rnd Rnd subfamily

Probab=97.48  E-value=0.00025  Score=54.79  Aligned_cols=24  Identities=13%  Similarity=0.243  Sum_probs=20.9

Q ss_pred             CcEEEeecCCCCC-HHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEG-TEELLQLIKLA   85 (150)
Q Consensus        62 l~vv~VSA~TGeG-ideL~~~I~e~   85 (150)
                      ..++.+||++|+| ++++|..+.++
T Consensus       150 ~~~~E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         150 EIYLECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             CEEEECccCcCCcCHHHHHHHHHHH
Confidence            3789999999995 99999988874

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK13796 GTPase YqeH; Provisional

Probab=97.46  E-value=0.00026  Score=61.24  Aligned_cols=57  Identities=23%  Similarity=0.349  Sum_probs=38.6

Q ss_pred             CCCEEEeeecCCCCCchh----hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKY----AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~----~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~   79 (150)
                      +.|+|+|+||+|+.+.+.    ..+|+.++.   .                     .+ +....++.+||++|.|+++|+
T Consensus        96 ~kpviLViNK~DLl~~~~~~~~i~~~l~~~~---k---------------------~~g~~~~~v~~vSAk~g~gI~eL~  151 (365)
T PRK13796         96 NNPVLLVGNKADLLPKSVKKNKVKNWLRQEA---K---------------------ELGLRPVDVVLISAQKGHGIDELL  151 (365)
T ss_pred             CCCEEEEEEchhhCCCccCHHHHHHHHHHHH---H---------------------hcCCCcCcEEEEECCCCCCHHHHH
Confidence            579999999999975432    233442211   0                     00 112368999999999999999


Q ss_pred             HHHHHH
Q psy7275          80 QLIKLA   85 (150)
Q Consensus        80 ~~I~e~   85 (150)
                      +.|.+.
T Consensus       152 ~~I~~~  157 (365)
T PRK13796        152 EAIEKY  157 (365)
T ss_pred             HHHHHh
Confidence            998653

>PRK03003 GTP-binding protein Der; Reviewed

Probab=97.45  E-value=0.00022  Score=63.43  Aligned_cols=55  Identities=18%  Similarity=0.145  Sum_probs=36.9

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +.+.|+|+|+||+|+...+..      ...+.               ++     .+   -..++|||++|.|+++|++.|
T Consensus       144 ~~~~piilV~NK~Dl~~~~~~------~~~~~---------------~~-----g~---~~~~~iSA~~g~gi~eL~~~i  194 (472)
T PRK03003        144 RSGKPVILAANKVDDERGEAD------AAALW---------------SL-----GL---GEPHPVSALHGRGVGDLLDAV  194 (472)
T ss_pred             HcCCCEEEEEECccCCccchh------hHHHH---------------hc-----CC---CCeEEEEcCCCCCcHHHHHHH
Confidence            357899999999998543210      00000               00     01   145799999999999999998


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      ...+
T Consensus       195 ~~~l  198 (472)
T PRK03003        195 LAAL  198 (472)
T ss_pred             Hhhc
Confidence            7665

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.43  E-value=0.00024  Score=64.48  Aligned_cols=59  Identities=19%  Similarity=0.177  Sum_probs=40.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++.+|.|+||+||..++.        +.....++.-.+                ...-..+.+||+||.|+++++++|.
T Consensus       127 ~~LeIiPViNKIDLP~Adp--------ervk~eIe~~iG----------------id~~dav~~SAKtG~gI~~iLe~Iv  182 (603)
T COG0481         127 NNLEIIPVLNKIDLPAADP--------ERVKQEIEDIIG----------------IDASDAVLVSAKTGIGIEDVLEAIV  182 (603)
T ss_pred             cCcEEEEeeecccCCCCCH--------HHHHHHHHHHhC----------------CCcchheeEecccCCCHHHHHHHHH
Confidence            4678999999999976543        222222221000                1123789999999999999999998


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       183 ~~i  185 (603)
T COG0481         183 EKI  185 (603)
T ss_pred             hhC
Confidence            765

>PRK12736 elongation factor Tu; Reviewed

Probab=97.41  E-value=0.0003  Score=61.22  Aligned_cols=19  Identities=21%  Similarity=0.555  Sum_probs=14.5

Q ss_pred             CCCCC-EEEeeecCCCCCch
Q psy7275           3 DTGFP-YTELVVGIDIVNHK   21 (150)
Q Consensus         3 k~~lP-~IlV~NKiDl~~~~   21 (150)
                      ..++| +|+|+||+|+.+.+
T Consensus       125 ~~g~~~~IvviNK~D~~~~~  144 (394)
T PRK12736        125 QVGVPYLVVFLNKVDLVDDE  144 (394)
T ss_pred             HcCCCEEEEEEEecCCcchH
Confidence            35788 67899999997543

>PRK05433 GTP-binding protein LepA; Provisional

Probab=97.38  E-value=0.00044  Score=63.69  Aligned_cols=57  Identities=19%  Similarity=0.212  Sum_probs=38.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~   81 (150)
                      .++|+|+|+||+|+.+....        ...+.+.                  +..  ...+++++||++|.|+++|+++
T Consensus       125 ~~lpiIvViNKiDl~~a~~~--------~v~~ei~------------------~~lg~~~~~vi~iSAktG~GI~~Ll~~  178 (600)
T PRK05433        125 NDLEIIPVLNKIDLPAADPE--------RVKQEIE------------------DVIGIDASDAVLVSAKTGIGIEEVLEA  178 (600)
T ss_pred             CCCCEEEEEECCCCCcccHH--------HHHHHHH------------------HHhCCCcceEEEEecCCCCCHHHHHHH
Confidence            57899999999998653321        1111111                  101  1125899999999999999999


Q ss_pred             HHHHH
Q psy7275          82 IKLAG   86 (150)
Q Consensus        82 I~e~~   86 (150)
                      |.+.+
T Consensus       179 I~~~l  183 (600)
T PRK05433        179 IVERI  183 (600)
T ss_pred             HHHhC
Confidence            97654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=97.35  E-value=0.00027  Score=61.12  Aligned_cols=53  Identities=25%  Similarity=0.281  Sum_probs=39.0

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCC-cEEEeecCCCCCHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STL-KVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l-~vv~VSA~TGeGideL~~   80 (150)
                      +.+.|+|+|+||+|+.+.+...         +                      +|+ .++ ++++|||.+|.|++++++
T Consensus       105 ~~~~piilVvNK~D~~~~~~~~---------~----------------------~~~~lg~~~~~~vSa~~g~gv~~ll~  153 (429)
T TIGR03594       105 KSGKPVILVANKIDGKKEDAVA---------A----------------------EFYSLGFGEPIPISAEHGRGIGDLLD  153 (429)
T ss_pred             HhCCCEEEEEECccCCcccccH---------H----------------------HHHhcCCCCeEEEeCCcCCChHHHHH
Confidence            4578999999999986543210         0                      111 123 789999999999999999


Q ss_pred             HHHHHH
Q psy7275          81 LIKLAG   86 (150)
Q Consensus        81 ~I~e~~   86 (150)
                      .+....
T Consensus       154 ~i~~~l  159 (429)
T TIGR03594       154 AILELL  159 (429)
T ss_pred             HHHHhc
Confidence            987665

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0462|consensus

Probab=97.34  E-value=0.00033  Score=64.41  Aligned_cols=59  Identities=24%  Similarity=0.273  Sum_probs=41.4

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~   81 (150)
                      ..++-+|+|+||+|+.+++.        +.....+.                 +-|- ..-+++.|||++|.|+++++++
T Consensus       175 e~~L~iIpVlNKIDlp~adp--------e~V~~q~~-----------------~lF~~~~~~~i~vSAK~G~~v~~lL~A  229 (650)
T KOG0462|consen  175 EAGLAIIPVLNKIDLPSADP--------ERVENQLF-----------------ELFDIPPAEVIYVSAKTGLNVEELLEA  229 (650)
T ss_pred             HcCCeEEEeeeccCCCCCCH--------HHHHHHHH-----------------HHhcCCccceEEEEeccCccHHHHHHH
Confidence            46788999999999976543        11111111                 1121 2349999999999999999999


Q ss_pred             HHHHH
Q psy7275          82 IKLAG   86 (150)
Q Consensus        82 I~e~~   86 (150)
                      |.+.+
T Consensus       230 II~rV  234 (650)
T KOG0462|consen  230 IIRRV  234 (650)
T ss_pred             HHhhC
Confidence            98865

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.34  E-value=0.00032  Score=52.07  Aligned_cols=23  Identities=13%  Similarity=0.183  Sum_probs=16.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHh
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWM   27 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm   27 (150)
                      +.|+|+|+||+|+.+.+...+|.
T Consensus        42 ~k~~iivlNK~DL~~~~~~~~~~   64 (141)
T cd01857          42 RKKNILLLNKADLLTEEQRKAWA   64 (141)
T ss_pred             CCcEEEEEechhcCCHHHHHHHH
Confidence            68999999999997644333333

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.34  E-value=0.00023  Score=53.83  Aligned_cols=58  Identities=22%  Similarity=0.225  Sum_probs=37.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh----cCCcEEEeecCCC------C
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY----STLKVVGFSSVSG------E   73 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy----~~l~vv~VSA~TG------e   73 (150)
                      .+.|+++|.||+|+.+.....+..       +.+.                ++++-    ....++.+||++|      .
T Consensus        99 ~~~piliv~NK~Dl~~~~~~~~i~-------~~~~----------------l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          99 SGKPILVLANKQDKKNALLGADVI-------EYLS----------------LEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             cCCcEEEEEeCCCCcCCCCHHHHH-------HhcC----------------cccccCCCCceEEEEEeEceeCCCCcccc
Confidence            368999999999997654322211       1111                11111    1347888999999      8


Q ss_pred             CHHHHHHHHHH
Q psy7275          74 GTEELLQLIKL   84 (150)
Q Consensus        74 GideL~~~I~e   84 (150)
                      |+++-++.|.+
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999988753

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>TIGR01393 lepA GTP-binding protein LepA

Probab=97.33  E-value=0.0005  Score=63.25  Aligned_cols=59  Identities=19%  Similarity=0.234  Sum_probs=38.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.+.        +...+.+..          .+     . +...+++.+||++|.|+++|++.|.
T Consensus       121 ~~ipiIiViNKiDl~~~~~--------~~~~~el~~----------~l-----g-~~~~~vi~vSAktG~GI~~Lle~I~  176 (595)
T TIGR01393       121 NDLEIIPVINKIDLPSADP--------ERVKKEIEE----------VI-----G-LDASEAILASAKTGIGIEEILEAIV  176 (595)
T ss_pred             cCCCEEEEEECcCCCccCH--------HHHHHHHHH----------Hh-----C-CCcceEEEeeccCCCCHHHHHHHHH
Confidence            5789999999999864322        111111110          00     0 0112589999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       177 ~~l  179 (595)
T TIGR01393       177 KRV  179 (595)
T ss_pred             HhC
Confidence            654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=97.28  E-value=0.00046  Score=60.35  Aligned_cols=19  Identities=11%  Similarity=0.254  Sum_probs=16.2

Q ss_pred             CCcEEEeecCCCCCHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~   79 (150)
                      ..++++|||.+|+|++++.
T Consensus       171 ~~~iipiSA~~g~ni~~~~  189 (406)
T TIGR02034       171 DVTFIPLSALKGDNVVSRS  189 (406)
T ss_pred             CccEEEeecccCCCCcccc
Confidence            4689999999999998643

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.27  E-value=0.00042  Score=60.53  Aligned_cols=60  Identities=17%  Similarity=0.237  Sum_probs=45.4

Q ss_pred             CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275           7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus         7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      -+|+|-||+|+++.+.+.|   .|+...+.++.                 ..-.+.++++|||.-+.++|.|+++|.+.+
T Consensus       142 ~iiIvQNKIDlV~~E~AlE---~y~qIk~FvkG-----------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         142 NIIIVQNKIDLVSRERALE---NYEQIKEFVKG-----------------TVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             eEEEEecccceecHHHHHH---HHHHHHHHhcc-----------------cccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence            4799999999999887644   55555554432                 123467999999999999999999887654

>PRK00093 GTP-binding protein Der; Reviewed

Probab=97.25  E-value=0.00046  Score=59.96  Aligned_cols=51  Identities=27%  Similarity=0.292  Sum_probs=36.1

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc-CC-cEEEeecCCCCCHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS-TL-KVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~-~l-~vv~VSA~TGeGideL~~   80 (150)
                      +.+.|+|+|+||+|..+.+.         ..+                      +|+. ++ .+++|||.+|.|++++++
T Consensus       107 ~~~~piilv~NK~D~~~~~~---------~~~----------------------~~~~lg~~~~~~iSa~~g~gv~~l~~  155 (435)
T PRK00093        107 KSNKPVILVVNKVDGPDEEA---------DAY----------------------EFYSLGLGEPYPISAEHGRGIGDLLD  155 (435)
T ss_pred             HcCCcEEEEEECccCccchh---------hHH----------------------HHHhcCCCCCEEEEeeCCCCHHHHHH
Confidence            45789999999999654211         001                      1111 22 578999999999999999


Q ss_pred             HHHH
Q psy7275          81 LIKL   84 (150)
Q Consensus        81 ~I~e   84 (150)
                      .|..
T Consensus       156 ~I~~  159 (435)
T PRK00093        156 AILE  159 (435)
T ss_pred             HHHh
Confidence            9876

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=97.25  E-value=0.0011  Score=49.83  Aligned_cols=57  Identities=7%  Similarity=0.093  Sum_probs=36.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCC---CCCHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVS---GEGTEELLQ   80 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~T---GeGideL~~   80 (150)
                      ..+|+|+|.||+|+.......     .+ ....+                  .+- ...+++.+||++   +.|+++++.
T Consensus       108 ~~~p~iiv~nK~Dl~~~~~~~-----~~-~~~~~------------------~~~-~~~~~~e~Sa~~~~~~~~i~~~f~  162 (170)
T cd04115         108 NEVPRILVGNKCDLREQIQVP-----TD-LAQRF------------------ADA-HSMPLFETSAKDPSENDHVEAIFM  162 (170)
T ss_pred             CCCCEEEEEECccchhhcCCC-----HH-HHHHH------------------HHH-cCCcEEEEeccCCcCCCCHHHHHH
Confidence            468999999999986432210     00 00111                  011 146899999999   888888887


Q ss_pred             HHHHH
Q psy7275          81 LIKLA   85 (150)
Q Consensus        81 ~I~e~   85 (150)
                      .+...
T Consensus       163 ~l~~~  167 (170)
T cd04115         163 TLAHK  167 (170)
T ss_pred             HHHHH
Confidence            77543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=97.23  E-value=0.00028  Score=53.28  Aligned_cols=57  Identities=19%  Similarity=0.230  Sum_probs=36.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCC------CCCH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVS------GEGT   75 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~T------GeGi   75 (150)
                      .+.|+|+|.||+|+.++...       +.+...+.                +..+-  ....++.+||++      |+|+
T Consensus        98 ~~~piilv~NK~Dl~~~~~~-------~~i~~~~~----------------~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v  154 (164)
T cd04162          98 PDLPLVVLANKQDLPAARSV-------QEIHKELE----------------LEPIARGRRWILQGTSLDDDGSPSRMEAV  154 (164)
T ss_pred             CCCcEEEEEeCcCCcCCCCH-------HHHHHHhC----------------ChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence            46899999999998654321       11111111                01111  135778889988      9999


Q ss_pred             HHHHHHHH
Q psy7275          76 EELLQLIK   83 (150)
Q Consensus        76 deL~~~I~   83 (150)
                      +++|+.+.
T Consensus       155 ~~~~~~~~  162 (164)
T cd04162         155 KDLLSQLI  162 (164)
T ss_pred             HHHHHHHh
Confidence            99998765

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=97.22  E-value=0.00042  Score=54.72  Aligned_cols=17  Identities=12%  Similarity=0.333  Sum_probs=14.7

Q ss_pred             CcEEEeecCCCCCHHHH
Q psy7275          62 LKVVGFSSVSGEGTEEL   78 (150)
Q Consensus        62 l~vv~VSA~TGeGideL   78 (150)
                      .++++|||.+|.|+++.
T Consensus       169 ~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         169 ITFIPISALDGDNVVSR  185 (208)
T ss_pred             ceEEEEeCCCCCCCccC
Confidence            56999999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.18  E-value=0.00075  Score=57.75  Aligned_cols=57  Identities=23%  Similarity=0.274  Sum_probs=40.1

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc--CCcEEEeecCCCCCHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS--TLKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~--~l~vv~VSA~TGeGideL~~   80 (150)
                      ..++..|+|+||+|+++.+....  +...                         .+|.  +.+++.+|+++++|+++|.+
T Consensus       108 ~~gi~pvIvlnK~DL~~~~~~~~--~~~~-------------------------~~y~~~gy~v~~~s~~~~~~~~~l~~  160 (301)
T COG1162         108 AGGIEPVIVLNKIDLLDDEEAAV--KELL-------------------------REYEDIGYPVLFVSAKNGDGLEELAE  160 (301)
T ss_pred             HcCCcEEEEEEccccCcchHHHH--HHHH-------------------------HHHHhCCeeEEEecCcCcccHHHHHH
Confidence            46788899999999987665321  0011                         1222  34889999999999999998


Q ss_pred             HHHHHH
Q psy7275          81 LIKLAG   86 (150)
Q Consensus        81 ~I~e~~   86 (150)
                      .+....
T Consensus       161 ~l~~~~  166 (301)
T COG1162         161 LLAGKI  166 (301)
T ss_pred             HhcCCe
Confidence            887643

>PRK09866 hypothetical protein; Provisional

Probab=97.18  E-value=0.00079  Score=63.17  Aligned_cols=60  Identities=15%  Similarity=0.114  Sum_probs=38.4

Q ss_pred             CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHH-HhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALD-EFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~-efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      .|+|+|+||+|..+.+..     +.+.+.+.+..              .+. .....-++++|||++|.|+++|++.|..
T Consensus       290 ~PVILVVNKIDl~dreed-----dkE~Lle~V~~--------------~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        290 VPLYVLVNKFDQQDRNSD-----DADQVRALISG--------------TLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCEEEEEEcccCCCcccc-----hHHHHHHHHHH--------------HHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            599999999998643220     11112222110              011 1123458999999999999999999987

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.16  E-value=0.0014  Score=48.14  Aligned_cols=57  Identities=18%  Similarity=0.135  Sum_probs=38.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|+|+|.||+|+.+....     +.+..++..                   .-+ +.+++.+||++|.|+.+++..+.+
T Consensus       104 ~~~iivvg~K~D~~~~~~v-----~~~~~~~~~-------------------~~~-~~~~~e~Sa~~~~~v~~~f~~~i~  158 (162)
T PF00071_consen  104 DIPIIVVGNKSDLSDEREV-----SVEEAQEFA-------------------KEL-GVPYFEVSAKNGENVKEIFQELIR  158 (162)
T ss_dssp             TSEEEEEEETTTGGGGSSS-----CHHHHHHHH-------------------HHT-TSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred             cccceeeeccccccccccc-----hhhHHHHHH-------------------HHh-CCEEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999998652221     111111111                   112 389999999999999999998876


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       159 ~i  160 (162)
T PF00071_consen  159 KI  160 (162)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.15  E-value=0.00075  Score=63.01  Aligned_cols=53  Identities=25%  Similarity=0.242  Sum_probs=37.1

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc--CCcEEEeecCCCCCHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS--TLKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~--~l~vv~VSA~TGeGideL~~   80 (150)
                      +.+.|+|+|+||+|+......         ..                      +|+.  .-..++|||++|.|+++|++
T Consensus       381 ~~~~pvIlV~NK~D~~~~~~~---------~~----------------------~~~~lg~~~~~~iSA~~g~GI~eLl~  429 (712)
T PRK09518        381 RAGKPVVLAVNKIDDQASEYD---------AA----------------------EFWKLGLGEPYPISAMHGRGVGDLLD  429 (712)
T ss_pred             hcCCCEEEEEECcccccchhh---------HH----------------------HHHHcCCCCeEEEECCCCCCchHHHH
Confidence            457899999999998542110         00                      1110  12467999999999999999


Q ss_pred             HHHHHH
Q psy7275          81 LIKLAG   86 (150)
Q Consensus        81 ~I~e~~   86 (150)
                      .|.+.+
T Consensus       430 ~i~~~l  435 (712)
T PRK09518        430 EALDSL  435 (712)
T ss_pred             HHHHhc
Confidence            987765

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.12  E-value=0.0018  Score=55.68  Aligned_cols=28  Identities=32%  Similarity=0.329  Sum_probs=25.0

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~ey   89 (150)
                      .+++.+||.+|+|+++|+++|.++.+..
T Consensus       229 ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         229 PPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             CceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence            5999999999999999999999877543

>COG0218 Predicted GTPase [General function prediction only]

Probab=97.08  E-value=0.0022  Score=52.05  Aligned_cols=64  Identities=22%  Similarity=0.193  Sum_probs=42.0

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCC--cEEEeecCCCCCHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTL--KVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l--~vv~VSA~TGeGideL~~   80 (150)
                      ..++|+++|+||+|.++....   -.-.....+.+.                   +...-  .++.+|+.++.|++++..
T Consensus       133 ~~~i~~~vv~tK~DKi~~~~~---~k~l~~v~~~l~-------------------~~~~~~~~~~~~ss~~k~Gi~~l~~  190 (200)
T COG0218         133 ELGIPVIVVLTKADKLKKSER---NKQLNKVAEELK-------------------KPPPDDQWVVLFSSLKKKGIDELKA  190 (200)
T ss_pred             HcCCCeEEEEEccccCChhHH---HHHHHHHHHHhc-------------------CCCCccceEEEEecccccCHHHHHH
Confidence            468999999999998875432   111111111111                   11111  289999999999999999


Q ss_pred             HHHHHHHH
Q psy7275          81 LIKLAGED   88 (150)
Q Consensus        81 ~I~e~~~e   88 (150)
                      .|.+.+.+
T Consensus       191 ~i~~~~~~  198 (200)
T COG0218         191 KILEWLKE  198 (200)
T ss_pred             HHHHHhhc
Confidence            99877643

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=97.07  E-value=0.0008  Score=58.88  Aligned_cols=20  Identities=15%  Similarity=0.228  Sum_probs=16.9

Q ss_pred             CCcEEEeecCCCCCHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~   80 (150)
                      ..++++|||++|.|+++...
T Consensus       181 ~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       181 TVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             cceEEEeecccccccccccc
Confidence            36899999999999987554

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=97.07  E-value=0.00092  Score=58.39  Aligned_cols=19  Identities=11%  Similarity=0.247  Sum_probs=16.5

Q ss_pred             CcEEEeecCCCCCHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~   80 (150)
                      .++++|||++|+|++++.+
T Consensus       180 ~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        180 IPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             ceEEEeecccCCCcccccc
Confidence            5899999999999988653

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.05  E-value=0.0024  Score=50.14  Aligned_cols=58  Identities=10%  Similarity=0.061  Sum_probs=39.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+++|.||+|+.+.....+..       ...                   + ..++.++.+||++|.|+++.+..|.
T Consensus       112 ~~~~i~lv~nK~Dl~~~~~~~~~~-------~~~-------------------~-~~~~~~~e~Sa~~~~~v~~~f~~ia  164 (215)
T PTZ00132        112 ENIPIVLVGNKVDVKDRQVKARQI-------TFH-------------------R-KKNLQYYDISAKSNYNFEKPFLWLA  164 (215)
T ss_pred             CCCCEEEEEECccCccccCCHHHH-------HHH-------------------H-HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            358999999999986432211100       000                   0 1246889999999999999999988


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+..
T Consensus       165 ~~l~~  169 (215)
T PTZ00132        165 RRLTN  169 (215)
T ss_pred             HHHhh
Confidence            77643

>cd01899 Ygr210 Ygr210 subfamily

Probab=97.04  E-value=0.0008  Score=57.55  Aligned_cols=58  Identities=14%  Similarity=-0.020  Sum_probs=40.2

Q ss_pred             CCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH-
Q psy7275           2 YDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ-   80 (150)
Q Consensus         2 yk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~-   80 (150)
                      +.+..|+|+|+||+|+.+.+.   +.       +.+.                  ..+...++++|||..|.|+++|.+ 
T Consensus       211 llt~KPvI~VlNK~Dl~~~~~---~~-------~~l~------------------~~~~~~~iI~iSA~~e~~L~~L~~~  262 (318)
T cd01899         211 RKRSKPMVIAANKADIPDAEN---NI-------SKLR------------------LKYPDEIVVPTSAEAELALRRAAKQ  262 (318)
T ss_pred             HhcCCcEEEEEEHHHccChHH---HH-------HHHH------------------hhCCCCeEEEEeCcccccHHHHHHh
Confidence            356789999999999754332   11       1111                  112346899999999999999987 


Q ss_pred             HHHHHHH
Q psy7275          81 LIKLAGE   87 (150)
Q Consensus        81 ~I~e~~~   87 (150)
                      .+.+.+.
T Consensus       263 ~i~~~lP  269 (318)
T cd01899         263 GLIKYDP  269 (318)
T ss_pred             hHHHhCC
Confidence            4777663

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.03  E-value=0.0014  Score=58.45  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHH-HHHHHHHhhc-CCcEEEeecCCCCCHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRS-MSLALDEFYS-TLKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~s-lsl~l~efy~-~l~vv~VSA~TGeGideL~~   80 (150)
                      -.++|+|+|++|+|+++.+......++..++...+..-.....+.--. ++-....... -.|++.+||+||+|++-|.+
T Consensus       253 a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e  332 (527)
T COG5258         253 AMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE  332 (527)
T ss_pred             hhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence            467899999999999988776666666666665543211000000000 0001112222 24899999999999876655


Q ss_pred             HHHH
Q psy7275          81 LIKL   84 (150)
Q Consensus        81 ~I~e   84 (150)
                      .+..
T Consensus       333 ~f~~  336 (527)
T COG5258         333 FFLL  336 (527)
T ss_pred             HHHh
Confidence            5443

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=97.02  E-value=0.0013  Score=57.20  Aligned_cols=51  Identities=24%  Similarity=0.070  Sum_probs=39.5

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      -+|.|+|+||+|+.+.+..           +.+                     ....++++|||.+|.|+++|.+.|..
T Consensus       239 Y~p~l~v~NKiD~~~~e~~-----------~~l---------------------~~~~~~v~isa~~~~nld~L~e~i~~  286 (365)
T COG1163         239 YKPALYVVNKIDLPGLEEL-----------ERL---------------------ARKPNSVPISAKKGINLDELKERIWD  286 (365)
T ss_pred             eeeeEEEEecccccCHHHH-----------HHH---------------------HhccceEEEecccCCCHHHHHHHHHH
Confidence            3699999999999874332           111                     12248999999999999999999998


Q ss_pred             HHH
Q psy7275          85 AGE   87 (150)
Q Consensus        85 ~~~   87 (150)
                      .+.
T Consensus       287 ~L~  289 (365)
T COG1163         287 VLG  289 (365)
T ss_pred             hhC
Confidence            764

>PLN00043 elongation factor 1-alpha; Provisional

Probab=97.02  E-value=0.0017  Score=57.74  Aligned_cols=56  Identities=14%  Similarity=0.193  Sum_probs=33.6

Q ss_pred             CCCC-EEEeeecCCCCCchhhHHHh-hcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh---cCCcEEEeecCCCCCHHH
Q psy7275           4 TGFP-YTELVVGIDIVNHKYAIEWM-QDFEVFQEALEADSSYISNLTRSMSLALDEFY---STLKVVGFSSVSGEGTEE   77 (150)
Q Consensus         4 ~~lP-~IlV~NKiDl~~~~~~~ewm-~D~e~f~eal~~e~~y~~~L~~slsl~l~efy---~~l~vv~VSA~TGeGide   77 (150)
                      .++| +|+|+||+|+.+.+    |. .+|+...+.+.              ..+.++.   ..+++++|||++|+|+.+
T Consensus       143 ~gi~~iIV~vNKmD~~~~~----~~~~~~~~i~~ei~--------------~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        143 LGVKQMICCCNKMDATTPK----YSKARYDEIVKEVS--------------SYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             cCCCcEEEEEEcccCCchh----hhHHHHHHHHHHHH--------------HHHHHcCCCcccceEEEEeccccccccc
Confidence            5776 68889999986322    32 23433333322              1112211   146899999999999864

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=96.97  E-value=0.0018  Score=57.51  Aligned_cols=59  Identities=14%  Similarity=0.262  Sum_probs=32.9

Q ss_pred             CCCC-EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHH
Q psy7275           4 TGFP-YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEE   77 (150)
Q Consensus         4 ~~lP-~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGide   77 (150)
                      .++| +|+|+||+|....++..+   +|+...+.+..       +...+     .|. ..+++|+|||.+|+|+.+
T Consensus       143 ~gi~~iiv~vNKmD~~~~~~~~~---~~~~i~~~i~~-------~l~~~-----g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        143 LGVKQMIVCINKMDDKTVNYSQE---RYDEIKKEVSA-------YLKKV-----GYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cCCCeEEEEEEccccccchhhHH---HHHHHHHHHHH-------HHHhc-----CCCcccceEEEeecccCCCccc
Confidence            5677 578999999543222111   23332232221       11111     111 247899999999999965

>KOG1144|consensus

Probab=96.95  E-value=0.0025  Score=60.69  Aligned_cols=31  Identities=29%  Similarity=0.396  Sum_probs=26.3

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHHHHhh
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGEDYEKN   92 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~ey~~~   92 (150)
                      +.+||.||.+|+|+.+|+..|.+..+-+...
T Consensus       662 vsiVPTSA~sGeGipdLl~llv~ltQk~m~~  692 (1064)
T KOG1144|consen  662 VSIVPTSAISGEGIPDLLLLLVQLTQKTMVE  692 (1064)
T ss_pred             EEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence            4779999999999999999999888766543

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=96.93  E-value=0.0019  Score=59.59  Aligned_cols=67  Identities=21%  Similarity=0.149  Sum_probs=39.3

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCC---------
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGE---------   73 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGe---------   73 (150)
                      ..++|+|+|+||+|+.+..+. +...+...+...+..+               ++ ...++++++||.+|.         
T Consensus       114 ~~~ip~IVviNKiD~~~a~~~-~v~~ei~~l~~~~g~~---------------~e-~l~~pvl~~SA~~g~~~~~~~~~~  176 (594)
T TIGR01394       114 ELGLKPIVVINKIDRPSARPD-EVVDEVFDLFAELGAD---------------DE-QLDFPIVYASGRAGWASLDLDDPS  176 (594)
T ss_pred             HCCCCEEEEEECCCCCCcCHH-HHHHHHHHHHHhhccc---------------cc-cccCcEEechhhcCcccccCcccc
Confidence            457899999999998654331 1111111110000000               00 113689999999996         


Q ss_pred             -CHHHHHHHHHHHH
Q psy7275          74 -GTEELLQLIKLAG   86 (150)
Q Consensus        74 -GideL~~~I~e~~   86 (150)
                       |++.|++.|.+.+
T Consensus       177 ~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       177 DNMAPLFDAIVRHV  190 (594)
T ss_pred             cCHHHHHHHHHHhC
Confidence             7888888776654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12735 elongation factor Tu; Reviewed

Probab=96.92  E-value=0.0022  Score=55.86  Aligned_cols=25  Identities=12%  Similarity=0.081  Sum_probs=18.5

Q ss_pred             CCcEEEeecCCCC----------CHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGE----------GTEELLQLIKLA   85 (150)
Q Consensus        61 ~l~vv~VSA~TGe----------GideL~~~I~e~   85 (150)
                      ..+++++||.+|.          |+..|+++|...
T Consensus       167 ~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        167 DTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             ceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence            3689999999995          566666666553

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=96.92  E-value=0.0015  Score=60.06  Aligned_cols=20  Identities=10%  Similarity=0.217  Sum_probs=16.4

Q ss_pred             cCCcEEEeecCCCCCHHHHH
Q psy7275          60 STLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus        60 ~~l~vv~VSA~TGeGideL~   79 (150)
                      ...++++|||++|.|++++-
T Consensus       194 ~~~~iipiSA~~g~ni~~~~  213 (632)
T PRK05506        194 HDVTFIPISALKGDNVVTRS  213 (632)
T ss_pred             CCccEEEEecccCCCccccc
Confidence            34679999999999998643

>CHL00071 tufA elongation factor Tu

Probab=96.92  E-value=0.0021  Score=56.20  Aligned_cols=19  Identities=21%  Similarity=0.359  Sum_probs=14.9

Q ss_pred             CCCCC-EEEeeecCCCCCch
Q psy7275           3 DTGFP-YTELVVGIDIVNHK   21 (150)
Q Consensus         3 k~~lP-~IlV~NKiDl~~~~   21 (150)
                      +.++| +|+|+||+|+.+.+
T Consensus       125 ~~g~~~iIvvvNK~D~~~~~  144 (409)
T CHL00071        125 QVGVPNIVVFLNKEDQVDDE  144 (409)
T ss_pred             HcCCCEEEEEEEccCCCCHH
Confidence            46789 77899999997643

>KOG0092|consensus

Probab=96.91  E-value=0.0018  Score=52.45  Aligned_cols=28  Identities=25%  Similarity=0.218  Sum_probs=24.9

Q ss_pred             cCCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          60 STLKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        60 ~~l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      .++.++.+||+||.|++++|..|.+.+-
T Consensus       140 ~gll~~ETSAKTg~Nv~~if~~Ia~~lp  167 (200)
T KOG0092|consen  140 QGLLFFETSAKTGENVNEIFQAIAEKLP  167 (200)
T ss_pred             cCCEEEEEecccccCHHHHHHHHHHhcc
Confidence            3689999999999999999999988763

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=96.89  E-value=0.0015  Score=58.50  Aligned_cols=19  Identities=16%  Similarity=0.335  Sum_probs=16.8

Q ss_pred             CCcEEEeecCCCCCHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~   79 (150)
                      ..++++|||++|+|++++.
T Consensus       199 ~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        199 DIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             CceEEEEEeecCCCccccc
Confidence            5789999999999998764

>KOG1423|consensus

Probab=96.86  E-value=0.0013  Score=57.10  Aligned_cols=62  Identities=18%  Similarity=0.205  Sum_probs=41.5

Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCC
Q psy7275          63 KVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQP  124 (150)
Q Consensus        63 ~vv~VSA~TGeGideL~~~I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~  124 (150)
                      +++.|||++|+|+++|.+.+-..+..-.=.|....---...++-+-+--+++-|+.+..+.+
T Consensus       247 ~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVP  308 (379)
T KOG1423|consen  247 RVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVP  308 (379)
T ss_pred             eEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccC
Confidence            69999999999999999999887754333333322222233344445556677888888764

>TIGR00485 EF-Tu translation elongation factor TU

Probab=96.82  E-value=0.0021  Score=55.79  Aligned_cols=19  Identities=16%  Similarity=0.134  Sum_probs=14.5

Q ss_pred             CcEEEeecCCCC-CHHHHHH
Q psy7275          62 LKVVGFSSVSGE-GTEELLQ   80 (150)
Q Consensus        62 l~vv~VSA~TGe-GideL~~   80 (150)
                      .+++++||++|. |..++++
T Consensus       168 ~~ii~vSa~~g~~g~~~~~~  187 (394)
T TIGR00485       168 TPIIRGSALKALEGDAEWEA  187 (394)
T ss_pred             ccEEECccccccccCCchhH
Confidence            689999999995 5555544

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=96.80  E-value=0.0044  Score=50.17  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             CcEEEeecCCCC-CHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGE-GTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGe-GideL~~~I~e~~   86 (150)
                      ..++.+||++|+ |++++|.....+.
T Consensus       150 ~~y~E~SAk~~~~~V~~~F~~~~~~~  175 (222)
T cd04173         150 VSYVECSSRSSERSVRDVFHVATVAS  175 (222)
T ss_pred             CEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence            589999999999 4999999988764

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PRK00049 elongation factor Tu; Reviewed

Probab=96.79  E-value=0.0028  Score=55.31  Aligned_cols=18  Identities=28%  Similarity=0.613  Sum_probs=13.9

Q ss_pred             CCCCCEE-EeeecCCCCCc
Q psy7275           3 DTGFPYT-ELVVGIDIVNH   20 (150)
Q Consensus         3 k~~lP~I-lV~NKiDl~~~   20 (150)
                      ..++|.| +|+||+|+.+.
T Consensus       125 ~~g~p~iiVvvNK~D~~~~  143 (396)
T PRK00049        125 QVGVPYIVVFLNKCDMVDD  143 (396)
T ss_pred             HcCCCEEEEEEeecCCcch
Confidence            4578976 58999999753

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=96.74  E-value=0.0016  Score=57.36  Aligned_cols=50  Identities=16%  Similarity=0.251  Sum_probs=35.7

Q ss_pred             CEEEeeecCCCCCchhh--HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHH
Q psy7275           7 PYTELVVGIDIVNHKYA--IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTE   76 (150)
Q Consensus         7 P~IlV~NKiDl~~~~~~--~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGid   76 (150)
                      -+|+++||+||++-+..  .+...||.+|.+.+.                    .....+||+||..|.++-
T Consensus       141 hvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~--------------------~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         141 HVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLG--------------------LKDVRFIPISALLGDNVV  192 (431)
T ss_pred             EEEEEEeeecccccCHHHHHHHHHHHHHHHHHcC--------------------CCcceEEechhccCCccc
Confidence            47899999999986543  345556666655543                    124599999999999863

>cd04168 TetM_like Tet(M)-like subfamily

Probab=96.68  E-value=0.0029  Score=51.58  Aligned_cols=24  Identities=38%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      +|++.-||.++.|++.|++.|...
T Consensus       210 ~Pv~~gsa~~~~Gv~~ll~~~~~~  233 (237)
T cd04168         210 FPVYHGSALKGIGIEELLEGITKL  233 (237)
T ss_pred             EEEEEccccCCcCHHHHHHHHHHh
Confidence            366677999999999999998764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PLN03127 Elongation factor Tu; Provisional

Probab=96.60  E-value=0.0042  Score=55.36  Aligned_cols=18  Identities=22%  Similarity=0.569  Sum_probs=14.2

Q ss_pred             CCCCC-EEEeeecCCCCCc
Q psy7275           3 DTGFP-YTELVVGIDIVNH   20 (150)
Q Consensus         3 k~~lP-~IlV~NKiDl~~~   20 (150)
                      ..++| +|+|+||+|+++.
T Consensus       174 ~~gip~iIvviNKiDlv~~  192 (447)
T PLN03127        174 QVGVPSLVVFLNKVDVVDD  192 (447)
T ss_pred             HcCCCeEEEEEEeeccCCH
Confidence            46789 4789999999753

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=96.58  E-value=0.0058  Score=54.39  Aligned_cols=54  Identities=17%  Similarity=0.243  Sum_probs=36.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+...+.        +.+..                       ..+.+++.|||++ .|++++++.+.
T Consensus       309 ~~~piIlV~NK~Dl~~~~~--------~~~~~-----------------------~~~~~~~~vSak~-~gI~~~~~~L~  356 (442)
T TIGR00450       309 SKKPFILVLNKIDLKINSL--------EFFVS-----------------------SKVLNSSNLSAKQ-LKIKALVDLLT  356 (442)
T ss_pred             CCCCEEEEEECccCCCcch--------hhhhh-----------------------hcCCceEEEEEec-CCHHHHHHHHH
Confidence            4679999999999864311        11110                       0135788999998 58888888887


Q ss_pred             HHHHHH
Q psy7275          84 LAGEDY   89 (150)
Q Consensus        84 e~~~ey   89 (150)
                      +.+.+.
T Consensus       357 ~~i~~~  362 (442)
T TIGR00450       357 QKINAF  362 (442)
T ss_pred             HHHHHH
Confidence            776543

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PLN03126 Elongation factor Tu; Provisional

Probab=96.53  E-value=0.0047  Score=55.61  Aligned_cols=18  Identities=22%  Similarity=0.381  Sum_probs=14.3

Q ss_pred             CCCCC-EEEeeecCCCCCc
Q psy7275           3 DTGFP-YTELVVGIDIVNH   20 (150)
Q Consensus         3 k~~lP-~IlV~NKiDl~~~   20 (150)
                      ..++| +|+|+||+|+.+.
T Consensus       194 ~~gi~~iIvvvNK~Dl~~~  212 (478)
T PLN03126        194 QVGVPNMVVFLNKQDQVDD  212 (478)
T ss_pred             HcCCCeEEEEEecccccCH
Confidence            35788 6789999999764

>PRK10218 GTP-binding protein; Provisional

Probab=96.49  E-value=0.0049  Score=57.08  Aligned_cols=67  Identities=12%  Similarity=0.039  Sum_probs=38.6

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCC---------
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGE---------   73 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGe---------   73 (150)
                      ..++|.|+|+||+|+.+..+. +-+   +.+.+.+.           .+.  ..+-...++++++||++|.         
T Consensus       118 ~~gip~IVviNKiD~~~a~~~-~vl---~ei~~l~~-----------~l~--~~~~~~~~PVi~~SA~~G~~~~~~~~~~  180 (607)
T PRK10218        118 AYGLKPIVVINKVDRPGARPD-WVV---DQVFDLFV-----------NLD--ATDEQLDFPIVYASALNGIAGLDHEDMA  180 (607)
T ss_pred             HcCCCEEEEEECcCCCCCchh-HHH---HHHHHHHh-----------ccC--ccccccCCCEEEeEhhcCcccCCccccc
Confidence            467899999999998765432 111   11111110           000  0001124689999999998         


Q ss_pred             -CHHHHHHHHHHHH
Q psy7275          74 -GTEELLQLIKLAG   86 (150)
Q Consensus        74 -GideL~~~I~e~~   86 (150)
                       |+..|+++|.+.+
T Consensus       181 ~~i~~Lld~Ii~~i  194 (607)
T PRK10218        181 EDMTPLYQAIVDHV  194 (607)
T ss_pred             cchHHHHHHHHHhC
Confidence             5777777665543

>cd04167 Snu114p Snu114p subfamily

Probab=96.43  E-value=0.0088  Score=47.16  Aligned_cols=16  Identities=25%  Similarity=0.407  Sum_probs=13.7

Q ss_pred             CCCCEEEeeecCCCCC
Q psy7275           4 TGFPYTELVVGIDIVN   19 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~   19 (150)
                      .+.|+|+|+||+|++.
T Consensus       122 ~~~p~iiviNK~D~~~  137 (213)
T cd04167         122 EGLPIVLVINKIDRLI  137 (213)
T ss_pred             cCCCEEEEEECcccCc
Confidence            4689999999999863

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.42  E-value=0.0056  Score=54.87  Aligned_cols=60  Identities=20%  Similarity=0.202  Sum_probs=42.1

Q ss_pred             CCCE-EEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPY-TELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~-IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      +++- |+|+||+|.+++....+.+       ..          +..+++      +...+++.+|+.+|+|+++|.+.|.
T Consensus       102 gi~~giivltk~D~~d~~r~e~~i-------~~----------Il~~l~------l~~~~i~~~s~~~g~GI~~Lk~~l~  158 (447)
T COG3276         102 GIKNGIIVLTKADRVDEARIEQKI-------KQ----------ILADLS------LANAKIFKTSAKTGRGIEELKNELI  158 (447)
T ss_pred             CCCceEEEEeccccccHHHHHHHH-------HH----------HHhhcc------cccccccccccccCCCHHHHHHHHH
Confidence            4554 9999999998765432211       11          112221      4567889999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +..+
T Consensus       159 ~L~~  162 (447)
T COG3276         159 DLLE  162 (447)
T ss_pred             Hhhh
Confidence            8775

>PRK09602 translation-associated GTPase; Reviewed

Probab=96.38  E-value=0.0037  Score=55.00  Aligned_cols=65  Identities=12%  Similarity=-0.128  Sum_probs=43.4

Q ss_pred             CCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHH-HHH
Q psy7275           2 YDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEE-LLQ   80 (150)
Q Consensus         2 yk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGide-L~~   80 (150)
                      +.+..|+|+|+||+|+...+.   ++       ..+                  .++ ....+++|||..|.++++ |.+
T Consensus       214 l~t~KPvI~VlNK~D~~~~~~---~l-------~~i------------------~~~-~~~~vvpISA~~e~~l~~~l~~  264 (396)
T PRK09602        214 RKISKPMVIAANKADLPPAEE---NI-------ERL------------------KEE-KYYIVVPTSAEAELALRRAAKA  264 (396)
T ss_pred             hhcCCCEEEEEEchhcccchH---HH-------HHH------------------Hhc-CCCcEEEEcchhhhhHHHHHHH
Confidence            456789999999999753221   11       111                  011 345799999999999999 777


Q ss_pred             HHHHHHHHHHhhhHH
Q psy7275          81 LIKLAGEDYEKNYRV   95 (150)
Q Consensus        81 ~I~e~~~ey~~~y~p   95 (150)
                      .+.+.+.+-...|.+
T Consensus       265 ~i~~~lp~~p~~~~~  279 (396)
T PRK09602        265 GLIDYIPGDSDFEIL  279 (396)
T ss_pred             hHHhhCCCCCccCcc
Confidence            777766554444444

>KOG0078|consensus

Probab=96.30  E-value=0.011  Score=48.20  Aligned_cols=59  Identities=17%  Similarity=0.056  Sum_probs=40.4

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|.|+|-||+|+......     ..+ .-+++.                 .|+  ++.++.+||++|.++++.|-.+.+
T Consensus       117 ~v~~~LvGNK~D~~~~R~V-----~~e-~ge~lA-----------------~e~--G~~F~EtSAk~~~NI~eaF~~La~  171 (207)
T KOG0078|consen  117 DVVKILVGNKCDLEEKRQV-----SKE-RGEALA-----------------REY--GIKFFETSAKTNFNIEEAFLSLAR  171 (207)
T ss_pred             CCcEEEeeccccccccccc-----cHH-HHHHHH-----------------HHh--CCeEEEccccCCCCHHHHHHHHHH
Confidence            6799999999998653221     011 011111                 122  689999999999999999888877


Q ss_pred             HHHH
Q psy7275          85 AGED   88 (150)
Q Consensus        85 ~~~e   88 (150)
                      .+.+
T Consensus       172 ~i~~  175 (207)
T KOG0078|consen  172 DILQ  175 (207)
T ss_pred             HHHh
Confidence            6644

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.28  E-value=0.0085  Score=51.19  Aligned_cols=57  Identities=18%  Similarity=0.264  Sum_probs=45.2

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|.|+|+||+|+++......|.+-|..                        +  ..+..+.+|+.++.|...+..++..
T Consensus        61 ~k~~i~vlNK~DL~~~~~~~~W~~~~~~------------------------~--~~~~~~~v~~~~~~~~~~i~~~~~~  114 (322)
T COG1161          61 EKPKLLVLNKADLAPKEVTKKWKKYFKK------------------------E--EGIKPIFVSAKSRQGGKKIRKALEK  114 (322)
T ss_pred             cCCcEEEEehhhcCCHHHHHHHHHHHHh------------------------c--CCCccEEEEeecccCccchHHHHHH
Confidence            4577999999999998888899854431                        1  1568899999999999988888777


Q ss_pred             HHH
Q psy7275          85 AGE   87 (150)
Q Consensus        85 ~~~   87 (150)
                      ..+
T Consensus       115 ~~~  117 (322)
T COG1161         115 LSE  117 (322)
T ss_pred             HHH
Confidence            665

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=96.19  E-value=0.028  Score=43.96  Aligned_cols=28  Identities=14%  Similarity=-0.082  Sum_probs=23.9

Q ss_pred             CCcEEEeecC--CCCCHHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSV--SGEGTEELLQLIKLAGED   88 (150)
Q Consensus        61 ~l~vv~VSA~--TGeGideL~~~I~e~~~e   88 (150)
                      ..+++.||+.  .|.|+..|.+.|...+.+
T Consensus       156 ~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         156 EPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             CCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence            3589999999  789999999999887755

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.09  E-value=0.0044  Score=48.31  Aligned_cols=28  Identities=14%  Similarity=0.287  Sum_probs=23.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFE   31 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e   31 (150)
                      .+.|.|+|+||+|+++.+...+|++.+.
T Consensus        29 ~~kp~IlVlNK~DL~~~~~l~~~~~~~~   56 (172)
T cd04178          29 GNKKLVLVLNKIDLVPKENVEKWLKYLR   56 (172)
T ss_pred             CCCCEEEEEehhhcCCHHHHHHHHHHHH
Confidence            4689999999999998777778885543

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK12740 elongation factor G; Reviewed

Probab=95.96  E-value=0.017  Score=53.34  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=22.0

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      ++++.+||++|.|++.|+++|...+
T Consensus       237 ~Pv~~gSA~~~~Gv~~LLd~i~~~l  261 (668)
T PRK12740        237 VPVFCGSALKNKGVQRLLDAVVDYL  261 (668)
T ss_pred             EEEEeccccCCccHHHHHHHHHHHC
Confidence            4788889999999999999988754

>KOG0461|consensus

Probab=95.83  E-value=0.024  Score=50.36  Aligned_cols=64  Identities=17%  Similarity=0.194  Sum_probs=42.2

Q ss_pred             CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHH--HhhcCCcEEEeecCCC----CCHHHHHH
Q psy7275           7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALD--EFYSTLKVVGFSSVSG----EGTEELLQ   80 (150)
Q Consensus         7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~--efy~~l~vv~VSA~TG----eGideL~~   80 (150)
                      ..|+|+||+|+.+......-+   +.              +...+...|+  .|..+.++++|||..|    +++.+|.+
T Consensus       124 klvvvinkid~lpE~qr~ski---~k--------------~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e  186 (522)
T KOG0461|consen  124 KLVVVINKIDVLPENQRASKI---EK--------------SAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKE  186 (522)
T ss_pred             ceEEEEeccccccchhhhhHH---HH--------------HHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHH
Confidence            478999999998765431111   11              1112222233  3666689999999999    88999988


Q ss_pred             HHHHHHH
Q psy7275          81 LIKLAGE   87 (150)
Q Consensus        81 ~I~e~~~   87 (150)
                      ++.....
T Consensus       187 ~l~s~if  193 (522)
T KOG0461|consen  187 ALESRIF  193 (522)
T ss_pred             HHHHhhc
Confidence            8877653

>KOG0094|consensus

Probab=95.76  E-value=0.02  Score=46.86  Aligned_cols=30  Identities=23%  Similarity=0.286  Sum_probs=25.3

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYE   90 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey~   90 (150)
                      +..++.+||++|.++.+||..|...+.+.+
T Consensus       159 ~a~f~etsak~g~NVk~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  159 NAEFIETSAKAGENVKQLFRRIAAALPGME  188 (221)
T ss_pred             CcEEEEecccCCCCHHHHHHHHHHhccCcc
Confidence            358899999999999999999888775543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=95.66  E-value=0.025  Score=44.66  Aligned_cols=82  Identities=18%  Similarity=0.078  Sum_probs=42.0

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhch--hhhhh---hHHHHHHH---HH--Hh---hcCCcEEEeec
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADS--SYISN---LTRSMSLA---LD--EF---YSTLKVVGFSS   69 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~--~y~~~---L~~slsl~---l~--ef---y~~l~vv~VSA   69 (150)
                      +.++|+|+|.||+|+..........+.++.-...+....  .....   -.....+.   -.  +|   -..+.+++.|+
T Consensus       107 ~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~  186 (203)
T cd04105         107 KNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSV  186 (203)
T ss_pred             cCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEE
Confidence            357899999999998765443333333333222222110  00000   00000000   00  11   12357899999


Q ss_pred             CCCC-CHHHHHHHHHH
Q psy7275          70 VSGE-GTEELLQLIKL   84 (150)
Q Consensus        70 ~TGe-GideL~~~I~e   84 (150)
                      ..+. |++.+.+.|.+
T Consensus       187 ~~~~~~~~~~~~w~~~  202 (203)
T cd04105         187 KVDGGGIDGWEEWIDE  202 (203)
T ss_pred             ecCCCChHhHHHHHhh
Confidence            8887 68888887764

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0394|consensus

Probab=95.58  E-value=0.028  Score=45.67  Aligned_cols=28  Identities=11%  Similarity=0.076  Sum_probs=24.2

Q ss_pred             cCCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          60 STLKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        60 ~~l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      .+++.+.+||+.+.++++-|..+.+.+-
T Consensus       151 gnipyfEtSAK~~~NV~~AFe~ia~~aL  178 (210)
T KOG0394|consen  151 GNIPYFETSAKEATNVDEAFEEIARRAL  178 (210)
T ss_pred             CCceeEEecccccccHHHHHHHHHHHHH
Confidence            4689999999999999999988877653

>KOG0093|consensus

Probab=95.58  E-value=0.024  Score=44.91  Aligned_cols=62  Identities=8%  Similarity=-0.036  Sum_probs=41.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|+|+|-||||+-+.....     .|.-+           .|...|         +++++..||+...++.++|+++..
T Consensus       126 naqvilvgnKCDmd~eRvis-----~e~g~-----------~l~~~L---------GfefFEtSaK~NinVk~~Fe~lv~  180 (193)
T KOG0093|consen  126 NAQVILVGNKCDMDSERVIS-----HERGR-----------QLADQL---------GFEFFETSAKENINVKQVFERLVD  180 (193)
T ss_pred             CceEEEEecccCCccceeee-----HHHHH-----------HHHHHh---------ChHHhhhcccccccHHHHHHHHHH
Confidence            57999999999986544320     01000           011111         357778999999999999999988


Q ss_pred             HHHHHHh
Q psy7275          85 AGEDYEK   91 (150)
Q Consensus        85 ~~~ey~~   91 (150)
                      ++.+-..
T Consensus       181 ~Ic~kms  187 (193)
T KOG0093|consen  181 IICDKMS  187 (193)
T ss_pred             HHHHHhh
Confidence            7765543

>PRK13351 elongation factor G; Reviewed

Probab=95.54  E-value=0.025  Score=52.54  Aligned_cols=25  Identities=24%  Similarity=0.089  Sum_probs=21.9

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      ++++..||++|.|++.|+++|...+
T Consensus       253 ~PV~~gSA~~~~Gv~~LLd~I~~~l  277 (687)
T PRK13351        253 VPVLFGSALKNIGIEPLLDAVVDYL  277 (687)
T ss_pred             EEEEecccCcCccHHHHHHHHHHHC
Confidence            4677789999999999999998866

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=95.51  E-value=0.0083  Score=49.09  Aligned_cols=100  Identities=14%  Similarity=0.158  Sum_probs=54.7

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|.++|+||+|....++        +...+.+.                 +.|....-.+.++..+|.|+..+.+.+
T Consensus       114 ~~~~p~iivvNK~D~~~~~~--------~~~~~~l~-----------------~~~~~~~~~~~ip~~~~~~~~~~vd~~  168 (268)
T cd04170         114 EAGIPRIIFINKMDRERADF--------DKTLAALQ-----------------EAFGRPVVPLQLPIGEGDDFKGVVDLL  168 (268)
T ss_pred             HcCCCEEEEEECCccCCCCH--------HHHHHHHH-----------------HHhCCCeEEEEecccCCCceeEEEEcc
Confidence            35789999999999876543        11112221                 112122233455678888887777777


Q ss_pred             HHHHHHH-----------HhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCCCCc
Q psy7275          83 KLAGEDY-----------EKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQPLWA  127 (150)
Q Consensus        83 ~e~~~ey-----------~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  127 (150)
                      ....-.|           ..++..+.++.+.+--+.-...-++-++++..+-.+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~  224 (268)
T cd04170         169 TEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTE  224 (268)
T ss_pred             cCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCH
Confidence            5443333           12344444444444444444555666666666655544

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG0076|consensus

Probab=95.49  E-value=0.011  Score=47.50  Aligned_cols=64  Identities=22%  Similarity=0.159  Sum_probs=41.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|.++..||-|+.+.-.+.|.=       ..+.    . ..+         .--+..++.+|||++|+|+++=...+.
T Consensus       125 eg~p~L~lankqd~q~~~~~~El~-------~~~~----~-~e~---------~~~rd~~~~pvSal~gegv~egi~w~v  183 (197)
T KOG0076|consen  125 EGAPVLVLANKQDLQNAMEAAELD-------GVFG----L-AEL---------IPRRDNPFQPVSALTGEGVKEGIEWLV  183 (197)
T ss_pred             cCCchhhhcchhhhhhhhhHHHHH-------HHhh----h-hhh---------cCCccCccccchhhhcccHHHHHHHHH
Confidence            367999999999997765432211       1110    0 000         001346889999999999999888887


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      ...+.
T Consensus       184 ~~~~k  188 (197)
T KOG0076|consen  184 KKLEK  188 (197)
T ss_pred             HHHhh
Confidence            76643

>KOG0395|consensus

Probab=95.39  E-value=0.066  Score=42.66  Aligned_cols=60  Identities=12%  Similarity=0.043  Sum_probs=39.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+|+|.||+|+........        .+...        +        ...+ ...++.+||+...+++++|..+.
T Consensus       107 ~~~PivlVGNK~Dl~~~R~V~~--------eeg~~--------l--------a~~~-~~~f~E~Sak~~~~v~~~F~~L~  161 (196)
T KOG0395|consen  107 DDVPIILVGNKCDLERERQVSE--------EEGKA--------L--------ARSW-GCAFIETSAKLNYNVDEVFYELV  161 (196)
T ss_pred             CCCCEEEEEEcccchhccccCH--------HHHHH--------H--------HHhc-CCcEEEeeccCCcCHHHHHHHHH
Confidence            3579999999999965322210        01000        1        1112 35699999999999999999887


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      .....
T Consensus       162 r~~~~  166 (196)
T KOG0395|consen  162 REIRL  166 (196)
T ss_pred             HHHHh
Confidence            76543

>COG2229 Predicted GTPase [General function prediction only]

Probab=95.26  E-value=0.054  Score=43.60  Aligned_cols=55  Identities=22%  Similarity=0.355  Sum_probs=40.2

Q ss_pred             CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275           6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      +|++|+.||.|+-+...       ++..++++..+                  ..++++|+++|..|+|..+.+..+...
T Consensus       122 ip~vVa~NK~DL~~a~p-------pe~i~e~l~~~------------------~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         122 IPVVVAINKQDLFDALP-------PEKIREALKLE------------------LLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             CCEEEEeeccccCCCCC-------HHHHHHHHHhc------------------cCCCceeeeecccchhHHHHHHHHHhh
Confidence            89999999999976533       22334444310                  036899999999999999888877654

>KOG0073|consensus

Probab=95.24  E-value=0.095  Score=41.91  Aligned_cols=57  Identities=26%  Similarity=0.267  Sum_probs=35.1

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +.|++++.||.|+.+.-..       +++..++                -|++..  .+.+++.+||.||+|+.+=+..+
T Consensus       117 G~~~Lvlank~dl~~~l~~-------~~i~~~~----------------~L~~l~ks~~~~l~~cs~~tge~l~~gidWL  173 (185)
T KOG0073|consen  117 GAPLLVLANKQDLPGALSL-------EEISKAL----------------DLEELAKSHHWRLVKCSAVTGEDLLEGIDWL  173 (185)
T ss_pred             CCceEEEEecCcCccccCH-------HHHHHhh----------------CHHHhccccCceEEEEeccccccHHHHHHHH
Confidence            5699999999998743221       1111221                123332  24699999999997766555544


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      ..
T Consensus       174 ~~  175 (185)
T KOG0073|consen  174 CD  175 (185)
T ss_pred             HH
Confidence            33

>KOG0088|consensus

Probab=95.24  E-value=0.062  Score=43.10  Aligned_cols=58  Identities=17%  Similarity=0.134  Sum_probs=37.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+-.++|-||+|+-.....        ..+++..    |+.+.             +...+..||+...|+.++|..+.
T Consensus       117 nei~l~IVGNKiDLEeeR~V--------t~qeAe~----YAesv-------------GA~y~eTSAk~N~Gi~elFe~Lt  171 (218)
T KOG0088|consen  117 NEIELLIVGNKIDLEEERQV--------TRQEAEA----YAESV-------------GALYMETSAKDNVGISELFESLT  171 (218)
T ss_pred             CeeEEEEecCcccHHHhhhh--------hHHHHHH----HHHhh-------------chhheecccccccCHHHHHHHHH
Confidence            34678999999998433221        1223322    21111             34667899999999999999886


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      ...
T Consensus       172 ~~M  174 (218)
T KOG0088|consen  172 AKM  174 (218)
T ss_pred             HHH
Confidence            544

>KOG0084|consensus

Probab=95.20  E-value=0.046  Score=44.51  Aligned_cols=57  Identities=16%  Similarity=0.156  Sum_probs=36.7

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCc-EEEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLK-VVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~-vv~VSA~TGeGideL~~~I~   83 (150)
                      ..|.++|.||+|+.++...     .++   ++-.    |    ..       +  .+++ +..+||+++.++++.|..+.
T Consensus       114 ~v~~lLVGNK~Dl~~~~~v-----~~~---~a~~----f----a~-------~--~~~~~f~ETSAK~~~NVe~~F~~la  168 (205)
T KOG0084|consen  114 NVPKLLVGNKCDLTEKRVV-----STE---EAQE----F----AD-------E--LGIPIFLETSAKDSTNVEDAFLTLA  168 (205)
T ss_pred             CCCeEEEeeccccHhheec-----CHH---HHHH----H----HH-------h--cCCcceeecccCCccCHHHHHHHHH
Confidence            3699999999998654322     111   1100    0    00       0  1345 89999999999998888776


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      ..+
T Consensus       169 ~~l  171 (205)
T KOG0084|consen  169 KEL  171 (205)
T ss_pred             HHH
Confidence            544

>KOG0072|consensus

Probab=95.12  E-value=0.048  Score=43.06  Aligned_cols=26  Identities=23%  Similarity=0.380  Sum_probs=23.3

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      ..+|..||.+|+|+|+.++.+++-+.
T Consensus       154 ~~Iv~tSA~kg~Gld~~~DWL~~~l~  179 (182)
T KOG0072|consen  154 WQIVKTSAVKGEGLDPAMDWLQRPLK  179 (182)
T ss_pred             eEEEeeccccccCCcHHHHHHHHHHh
Confidence            58899999999999999999988664

>TIGR00484 EF-G translation elongation factor EF-G

Probab=95.08  E-value=0.034  Score=51.87  Aligned_cols=25  Identities=20%  Similarity=0.115  Sum_probs=21.5

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      ++++..||.+|.|++.|+++|...+
T Consensus       254 ~PV~~gSa~~~~Gv~~LLd~I~~~l  278 (689)
T TIGR00484       254 FPVLCGSAFKNKGVQLLLDAVVDYL  278 (689)
T ss_pred             EEEEeccccCCccHHHHHHHHHHHC
Confidence            3677779999999999999998766

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1143|consensus

Probab=95.01  E-value=0.072  Score=47.86  Aligned_cols=79  Identities=19%  Similarity=0.280  Sum_probs=44.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhc--hhhhhhhHHHHHHHHHHhhcC-CcEEEeecCCCCCHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEAD--SSYISNLTRSMSLALDEFYST-LKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e--~~y~~~L~~slsl~l~efy~~-l~vv~VSA~TGeGideL~~   80 (150)
                      +++||.++++|+|+++..-.+.-++|.+.+..-..--  .-.+.+--...+-.-+..-.+ .+++.||+++|+|++=|..
T Consensus       302 L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~  381 (591)
T KOG1143|consen  302 LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT  381 (591)
T ss_pred             hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence            5789999999999999876665566655443322100  000000000000000011122 4999999999999976655


Q ss_pred             HH
Q psy7275          81 LI   82 (150)
Q Consensus        81 ~I   82 (150)
                      .+
T Consensus       382 fL  383 (591)
T KOG1143|consen  382 FL  383 (591)
T ss_pred             HH
Confidence            44

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=94.90  E-value=0.062  Score=48.96  Aligned_cols=25  Identities=20%  Similarity=0.065  Sum_probs=22.7

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+++..||.+|.|+..|+++|...+
T Consensus       249 ~PV~~GSA~~n~Gv~~LLd~i~~~~  273 (526)
T PRK00741        249 TPVFFGSALNNFGVQEFLDAFVEWA  273 (526)
T ss_pred             EEEEEeecccCcCHHHHHHHHHHHC
Confidence            4789999999999999999998876

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=94.65  E-value=0.019  Score=47.78  Aligned_cols=20  Identities=15%  Similarity=0.262  Sum_probs=16.1

Q ss_pred             CCCCCEEEeeecCCCCCchh
Q psy7275           3 DTGFPYTELVVGIDIVNHKY   22 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~   22 (150)
                      +.++|+|+|+||+|+.+.++
T Consensus       114 ~~~~p~ivviNK~D~~~a~~  133 (270)
T cd01886         114 RYNVPRIAFVNKMDRTGADF  133 (270)
T ss_pred             HcCCCEEEEEECCCCCCCCH
Confidence            45789999999999876543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=94.44  E-value=0.062  Score=48.06  Aligned_cols=56  Identities=16%  Similarity=0.257  Sum_probs=32.9

Q ss_pred             CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc-CCcEEEeecCCCCCHHHHH
Q psy7275           7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS-TLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus         7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~-~l~vv~VSA~TGeGideL~   79 (150)
                      -.|+++||+|..+-+.     +.|+.....+       +.|.+.+     .|.. +++++||||.+|.++.+--
T Consensus       147 ~lIVavNKMD~v~wde-----~rf~ei~~~v-------~~l~k~~-----G~~~~~v~FIPiSg~~G~Nl~~~s  203 (428)
T COG5256         147 QLIVAVNKMDLVSWDE-----ERFEEIVSEV-------SKLLKMV-----GYNPKDVPFIPISGFKGDNLTKKS  203 (428)
T ss_pred             eEEEEEEcccccccCH-----HHHHHHHHHH-------HHHHHHc-----CCCccCCeEEecccccCCcccccC
Confidence            3789999999876221     1233222222       1132222     2222 4789999999999986543

>COG1084 Predicted GTPase [General function prediction only]

Probab=94.40  E-value=0.079  Score=46.22  Aligned_cols=56  Identities=20%  Similarity=0.286  Sum_probs=38.5

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|+|+|+||+|+.+.+...+    .+   ..+.                 .+  .....+.+|+..|.|.+.+...+..
T Consensus       280 ~~p~v~V~nK~D~~~~e~~~~----~~---~~~~-----------------~~--~~~~~~~~~~~~~~~~d~~~~~v~~  333 (346)
T COG1084         280 KAPIVVVINKIDIADEEKLEE----IE---ASVL-----------------EE--GGEEPLKISATKGCGLDKLREEVRK  333 (346)
T ss_pred             CCCeEEEEecccccchhHHHH----HH---HHHH-----------------hh--ccccccceeeeehhhHHHHHHHHHH
Confidence            479999999999976554311    11   1111                 01  1245789999999999999988887


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       334 ~a  335 (346)
T COG1084         334 TA  335 (346)
T ss_pred             Hh
Confidence            75

>PRK12739 elongation factor G; Reviewed

Probab=94.35  E-value=0.066  Score=50.03  Aligned_cols=25  Identities=20%  Similarity=0.146  Sum_probs=22.0

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      ++++..||.+|.|++.|++.|...+
T Consensus       253 ~Pv~~gSa~~~~Gv~~LLd~I~~~l  277 (691)
T PRK12739        253 FPVLCGSAFKNKGVQPLLDAVVDYL  277 (691)
T ss_pred             EEEEeccccCCccHHHHHHHHHHHC
Confidence            3677889999999999999998866

>cd04169 RF3 RF3 subfamily

Probab=94.16  E-value=0.19  Score=41.64  Aligned_cols=24  Identities=25%  Similarity=0.130  Sum_probs=21.0

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      +|++..||.++.|+..|+++|...
T Consensus       240 ~Pv~~gsa~~~~Gv~~Lld~i~~~  263 (267)
T cd04169         240 TPVFFGSALNNFGVQELLDALVDL  263 (267)
T ss_pred             EEEEecccccCcCHHHHHHHHHHH
Confidence            378888999999999999998764

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK00007 elongation factor G; Reviewed

Probab=94.13  E-value=0.058  Score=50.46  Aligned_cols=25  Identities=20%  Similarity=0.143  Sum_probs=21.7

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      ++++..||.++.|++.|++.|...+
T Consensus       255 ~Pv~~gSa~~~~Gv~~LLd~I~~~l  279 (693)
T PRK00007        255 VPVLCGSAFKNKGVQPLLDAVVDYL  279 (693)
T ss_pred             EEEEecccccCcCHHHHHHHHHHHC
Confidence            4677779999999999999998866

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=93.90  E-value=0.38  Score=37.11  Aligned_cols=29  Identities=14%  Similarity=0.099  Sum_probs=24.0

Q ss_pred             cEEEeecC--CCCCHHHHHHHHHHHHHHHHh
Q psy7275          63 KVVGFSSV--SGEGTEELLQLIKLAGEDYEK   91 (150)
Q Consensus        63 ~vv~VSA~--TGeGideL~~~I~e~~~ey~~   91 (150)
                      .++.+||.  ++.|+++++..+...+.+-..
T Consensus       159 ~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~  189 (219)
T COG1100         159 ALLETSAKSLTGPNVNELFKELLRKLLEEIE  189 (219)
T ss_pred             ceeEeecccCCCcCHHHHHHHHHHHHHHhhh
Confidence            48899999  999999999998887754433

>cd01882 BMS1 Bms1

Probab=93.89  E-value=0.17  Score=40.70  Aligned_cols=53  Identities=17%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             CCCCEE-EeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCH
Q psy7275           4 TGFPYT-ELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGT   75 (150)
Q Consensus         4 ~~lP~I-lV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGi   75 (150)
                      .++|.+ +|+||+|+.+....      ++.....+..          .   ...+|....++++|||++.--+
T Consensus       131 ~g~p~vi~VvnK~D~~~~~~~------~~~~~~~l~~----------~---~~~~~~~~~ki~~iSa~~~~~~  184 (225)
T cd01882         131 HGFPRVMGVLTHLDLFKKNKT------LRKTKKRLKH----------R---FWTEVYQGAKLFYLSGIVHGRY  184 (225)
T ss_pred             cCCCeEEEEEeccccCCcHHH------HHHHHHHHHH----------H---HHHhhCCCCcEEEEeeccCCCC
Confidence            467855 59999998754321      1111122210          0   1234556779999999998443

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG4252|consensus

Probab=93.81  E-value=0.075  Score=43.40  Aligned_cols=58  Identities=12%  Similarity=0.026  Sum_probs=38.9

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|.++|-||||+++...+..     + ..+.          +.+-         -+.+.+.+|++...++-..|..+.+
T Consensus       124 ~IPtV~vqNKIDlveds~~~~-----~-evE~----------lak~---------l~~RlyRtSvked~NV~~vF~YLae  178 (246)
T KOG4252|consen  124 RIPTVFVQNKIDLVEDSQMDK-----G-EVEG----------LAKK---------LHKRLYRTSVKEDFNVMHVFAYLAE  178 (246)
T ss_pred             cCCeEEeeccchhhHhhhcch-----H-HHHH----------HHHH---------hhhhhhhhhhhhhhhhHHHHHHHHH
Confidence            689999999999986554311     0 0011          1111         1457789999999999999888876


Q ss_pred             HHH
Q psy7275          85 AGE   87 (150)
Q Consensus        85 ~~~   87 (150)
                      .+.
T Consensus       179 K~~  181 (246)
T KOG4252|consen  179 KLT  181 (246)
T ss_pred             HHH
Confidence            653

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=93.46  E-value=0.17  Score=46.48  Aligned_cols=65  Identities=22%  Similarity=0.216  Sum_probs=41.1

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhc--HHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCC-------
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQD--FEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGE-------   73 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D--~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGe-------   73 (150)
                      +.+++.|+|+||+|..++..  +|.-|  |+-|.+ +..+                +-.-.++++.-||..|.       
T Consensus       118 ~~gL~PIVVvNKiDrp~Arp--~~Vvd~vfDLf~~-L~A~----------------deQLdFPivYAS~~~G~a~~~~~~  178 (603)
T COG1217         118 ALGLKPIVVINKIDRPDARP--DEVVDEVFDLFVE-LGAT----------------DEQLDFPIVYASARNGTASLDPED  178 (603)
T ss_pred             HcCCCcEEEEeCCCCCCCCH--HHHHHHHHHHHHH-hCCC----------------hhhCCCcEEEeeccCceeccCccc
Confidence            46889999999999876543  34322  222222 1111                11225799999999885       


Q ss_pred             ---CHHHHHHHHHHHH
Q psy7275          74 ---GTEELLQLIKLAG   86 (150)
Q Consensus        74 ---GideL~~~I~e~~   86 (150)
                         .+..||+.|.+.+
T Consensus       179 ~~~~m~pLfe~I~~hv  194 (603)
T COG1217         179 EADDMAPLFETILDHV  194 (603)
T ss_pred             cccchhHHHHHHHHhC
Confidence               3777888877765

>KOG0086|consensus

Probab=93.28  E-value=0.19  Score=40.17  Aligned_cols=56  Identities=20%  Similarity=0.121  Sum_probs=37.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~   81 (150)
                      ..+-+|++-||.|+.+....        .|.++-.                   |.  +.+-+...||+||++++|-|-.
T Consensus       113 ~nIvviL~GnKkDL~~~R~V--------tflEAs~-------------------FaqEnel~flETSa~TGeNVEEaFl~  165 (214)
T KOG0086|consen  113 PNIVVILCGNKKDLDPEREV--------TFLEASR-------------------FAQENELMFLETSALTGENVEEAFLK  165 (214)
T ss_pred             CcEEEEEeCChhhcChhhhh--------hHHHHHh-------------------hhcccceeeeeecccccccHHHHHHH
Confidence            34567888999999765432        2333322                   22  2467889999999999987776


Q ss_pred             HHHHH
Q psy7275          82 IKLAG   86 (150)
Q Consensus        82 I~e~~   86 (150)
                      +...+
T Consensus       166 c~~tI  170 (214)
T KOG0086|consen  166 CARTI  170 (214)
T ss_pred             HHHHH
Confidence            65544

>KOG0098|consensus

Probab=93.17  E-value=0.15  Score=41.72  Aligned_cols=55  Identities=16%  Similarity=0.102  Sum_probs=35.9

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      .+-++++-||+||.......+  ++=++|.+                     +  ..+.+...||+||+|++|.|.-+..
T Consensus       111 NmvImLiGNKsDL~~rR~Vs~--EEGeaFA~---------------------e--hgLifmETSakt~~~VEEaF~nta~  165 (216)
T KOG0098|consen  111 NMVIMLIGNKSDLEARREVSK--EEGEAFAR---------------------E--HGLIFMETSAKTAENVEEAFINTAK  165 (216)
T ss_pred             CcEEEEEcchhhhhccccccH--HHHHHHHH---------------------H--cCceeehhhhhhhhhHHHHHHHHHH
Confidence            456889999999976654311  01112221                     1  2567779999999999998866543

>KOG0458|consensus

Probab=93.06  E-value=0.16  Score=47.19  Aligned_cols=54  Identities=31%  Similarity=0.433  Sum_probs=30.8

Q ss_pred             CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHH
Q psy7275           7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTE   76 (150)
Q Consensus         7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGid   76 (150)
                      -.|+++||+|+++      |-+|  .|++....   ..+.|..+.     .|. .++.+||||+.+|+|+-
T Consensus       317 qlivaiNKmD~V~------Wsq~--RF~eIk~~---l~~fL~~~~-----gf~es~v~FIPiSGl~GeNL~  371 (603)
T KOG0458|consen  317 QLIVAINKMDLVS------WSQD--RFEEIKNK---LSSFLKESC-----GFKESSVKFIPISGLSGENLI  371 (603)
T ss_pred             eEEEEeecccccC------ccHH--HHHHHHHH---HHHHHHHhc-----CcccCCcceEecccccCCccc
Confidence            3789999999865      4322  23332211   011111222     122 34699999999999974

>KOG0087|consensus

Probab=92.66  E-value=0.25  Score=40.71  Aligned_cols=55  Identities=15%  Similarity=0.109  Sum_probs=36.4

Q ss_pred             CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..+++++|-||+||...... .+   |-..|+                      | ..++.++.+||..+.+++..|..+
T Consensus       118 ~nivimLvGNK~DL~~lraV~te---~~k~~A----------------------e-~~~l~f~EtSAl~~tNVe~aF~~~  171 (222)
T KOG0087|consen  118 SNIVIMLVGNKSDLNHLRAVPTE---DGKAFA----------------------E-KEGLFFLETSALDATNVEKAFERV  171 (222)
T ss_pred             CCeEEEEeecchhhhhccccchh---hhHhHH----------------------H-hcCceEEEecccccccHHHHHHHH
Confidence            57899999999998652111 00   000111                      1 136899999999999999988655


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      ..
T Consensus       172 l~  173 (222)
T KOG0087|consen  172 LT  173 (222)
T ss_pred             HH
Confidence            43

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=92.53  E-value=0.21  Score=40.50  Aligned_cols=16  Identities=13%  Similarity=0.059  Sum_probs=13.8

Q ss_pred             CCCCCEEEeeecCCCC
Q psy7275           3 DTGFPYTELVVGIDIV   18 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~   18 (150)
                      +.++|+|+|+||+|+.
T Consensus       123 ~~~~p~ilviNKiD~~  138 (222)
T cd01885         123 KERVKPVLVINKIDRL  138 (222)
T ss_pred             HcCCCEEEEEECCCcc
Confidence            3578999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG1490|consensus

Probab=92.49  E-value=0.23  Score=45.80  Aligned_cols=55  Identities=18%  Similarity=0.155  Sum_probs=35.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~   81 (150)
                      ..|+|+|+||+|+..++.+.+   .-.++.+.+.                 ++  .+++++..|..+-+|+-++...
T Consensus       281 NK~~IlvlNK~D~m~~edL~~---~~~~ll~~~~-----------------~~--~~v~v~~tS~~~eegVm~Vrt~  335 (620)
T KOG1490|consen  281 NKVTILVLNKIDAMRPEDLDQ---KNQELLQTII-----------------DD--GNVKVVQTSCVQEEGVMDVRTT  335 (620)
T ss_pred             CCceEEEeecccccCccccCH---HHHHHHHHHH-----------------hc--cCceEEEecccchhceeeHHHH
Confidence            459999999999988766421   1111111111                 11  2478999999999998776543

>TIGR00503 prfC peptide chain release factor 3

Probab=91.98  E-value=0.71  Score=42.17  Aligned_cols=25  Identities=12%  Similarity=0.012  Sum_probs=22.3

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+++.-||.++.|++.|++.|...+
T Consensus       250 ~PV~~GSA~~n~Gv~~LLd~i~~~~  274 (527)
T TIGR00503       250 TPVFFGTALGNFGVDHFLDGLLQWA  274 (527)
T ss_pred             eEEEEeecccCccHHHHHHHHHHHC
Confidence            3778889999999999999998876

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG0081|consensus

Probab=91.97  E-value=0.62  Score=37.48  Aligned_cols=57  Identities=19%  Similarity=0.175  Sum_probs=36.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..-.+|++-||+|+.+.....+        .++.                .|.+-| .++.+..||.||.++++-.+.+.
T Consensus       123 E~PDivlcGNK~DL~~~R~Vs~--------~qa~----------------~La~ky-glPYfETSA~tg~Nv~kave~Ll  177 (219)
T KOG0081|consen  123 ENPDIVLCGNKADLEDQRVVSE--------DQAA----------------ALADKY-GLPYFETSACTGTNVEKAVELLL  177 (219)
T ss_pred             CCCCEEEEcCccchhhhhhhhH--------HHHH----------------HHHHHh-CCCeeeeccccCcCHHHHHHHHH
Confidence            3445889999999965443311        0111                122324 69999999999999987666654


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      ..
T Consensus       178 dl  179 (219)
T KOG0081|consen  178 DL  179 (219)
T ss_pred             HH
Confidence            43

>KOG0466|consensus

Probab=91.88  E-value=0.13  Score=45.17  Aligned_cols=67  Identities=13%  Similarity=0.102  Sum_probs=46.6

Q ss_pred             CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275           7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus         7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      -+|++-||+|+...+.+.|-   +++.+..+..                 ..-.+.++++|||.-+.++|-+.+.|.+.+
T Consensus       181 hiiilQNKiDli~e~~A~eq---~e~I~kFi~~-----------------t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  181 HIIILQNKIDLIKESQALEQ---HEQIQKFIQG-----------------TVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             eEEEEechhhhhhHHHHHHH---HHHHHHHHhc-----------------cccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            47888999999988776543   3333433321                 112356999999999999999999888766


Q ss_pred             HHHHhhh
Q psy7275          87 EDYEKNY   93 (150)
Q Consensus        87 ~ey~~~y   93 (150)
                      ..=.++|
T Consensus       241 PvPvRdf  247 (466)
T KOG0466|consen  241 PVPVRDF  247 (466)
T ss_pred             CCCcccc
Confidence            5444443

>KOG1487|consensus

Probab=91.40  E-value=0.15  Score=43.80  Aligned_cols=51  Identities=20%  Similarity=0.164  Sum_probs=39.3

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      -+|.|.|+||+|-.+-+..                                +=.|.....++|||-+|.++|+|++.+.+
T Consensus       231 yVp~iyvLNkIdsISiEEL--------------------------------dii~~iphavpISA~~~wn~d~lL~~mwe  278 (358)
T KOG1487|consen  231 YVPCIYVLNKIDSISIEEL--------------------------------DIIYTIPHAVPISAHTGWNFDKLLEKMWE  278 (358)
T ss_pred             eeeeeeeecccceeeeecc--------------------------------ceeeeccceeecccccccchHHHHHHHhh
Confidence            4699999999996554431                                11245568899999999999999999887


Q ss_pred             HHH
Q psy7275          85 AGE   87 (150)
Q Consensus        85 ~~~   87 (150)
                      -..
T Consensus       279 yL~  281 (358)
T KOG1487|consen  279 YLK  281 (358)
T ss_pred             cch
Confidence            654

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=91.37  E-value=0.55  Score=36.28  Aligned_cols=50  Identities=20%  Similarity=0.279  Sum_probs=35.9

Q ss_pred             CCEEEeeecCCCCCchhh---HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           6 FPYTELVVGIDIVNHKYA---IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~~~---~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .|+|-|++|+|+..+...   +.|+                            -|-. .-+++.+||....|+++|++.+
T Consensus        91 k~vIgvVTK~DLaed~dI~~~~~~L----------------------------~eaG-a~~IF~~s~~d~~gv~~l~~~L  141 (148)
T COG4917          91 KKVIGVVTKADLAEDADISLVKRWL----------------------------REAG-AEPIFETSAVDNQGVEELVDYL  141 (148)
T ss_pred             cceEEEEecccccchHhHHHHHHHH----------------------------HHcC-CcceEEEeccCcccHHHHHHHH
Confidence            379999999999753221   2232                            1111 3589999999999999999887


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      ..
T Consensus       142 ~~  143 (148)
T COG4917         142 AS  143 (148)
T ss_pred             Hh
Confidence            64

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=91.01  E-value=0.88  Score=35.17  Aligned_cols=63  Identities=14%  Similarity=0.142  Sum_probs=39.9

Q ss_pred             CCEEEeeecCCCCCchhhHHHhhcH-HHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEe-----ecCCCCCHHHHH
Q psy7275           6 FPYTELVVGIDIVNHKYAIEWMQDF-EVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGF-----SSVSGEGTEELL   79 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~~~~ewm~D~-e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~V-----SA~TGeGideL~   79 (150)
                      .++|+|||+.|-.......+|+.+. ..++..+                  ...  +-+++.+     |+..+.++++|+
T Consensus       117 ~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~------------------~~c--~~r~~~f~~~~~~~~~~~q~~~Ll  176 (196)
T cd01852         117 DHTIVLFTRGDDLEGGTLEDYLENSCEALKRLL------------------EKC--GGRYVAFNNKAKGEEQEQQVKELL  176 (196)
T ss_pred             hcEEEEEECccccCCCcHHHHHHhccHHHHHHH------------------HHh--CCeEEEEeCCCCcchhHHHHHHHH
Confidence            4789999999977655444554333 2222222                  221  2233344     456788999999


Q ss_pred             HHHHHHHHH
Q psy7275          80 QLIKLAGED   88 (150)
Q Consensus        80 ~~I~e~~~e   88 (150)
                      +.|.+.+.+
T Consensus       177 ~~i~~~~~~  185 (196)
T cd01852         177 AKVESMVKE  185 (196)
T ss_pred             HHHHHHHHh
Confidence            999999987

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1191|consensus

Probab=90.81  E-value=0.27  Score=45.00  Aligned_cols=61  Identities=21%  Similarity=0.140  Sum_probs=38.3

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcE-EEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKV-VGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~v-v~VSA~TGeGideL~~~I~   83 (150)
                      +-|+|+|.||+|+.+.-....|.        -+    -|.+.          +-.+.+++ +.||++|++|++.|.+++.
T Consensus       389 ~~~~i~~~nk~D~~s~~~~~~~~--------~~----~~~~~----------~~~~~~~i~~~vs~~tkeg~~~L~~all  446 (531)
T KOG1191|consen  389 KQRIILVANKSDLVSKIPEMTKI--------PV----VYPSA----------EGRSVFPIVVEVSCTTKEGCERLSTALL  446 (531)
T ss_pred             ccceEEEechhhccCccccccCC--------ce----ecccc----------ccCcccceEEEeeechhhhHHHHHHHHH
Confidence            45899999999998652111221        00    00000          00123444 4599999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       447 ~~~~  450 (531)
T KOG1191|consen  447 NIVE  450 (531)
T ss_pred             HHHH
Confidence            8764

>KOG1424|consensus

Probab=90.20  E-value=0.29  Score=45.11  Aligned_cols=38  Identities=24%  Similarity=0.398  Sum_probs=29.9

Q ss_pred             CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCC
Q psy7275           7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVS   71 (150)
Q Consensus         7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~T   71 (150)
                      -.++++||+||++++....|-+-|.                           -++|++|+-||.-
T Consensus       207 ~~~LLvNKaDLl~~~qr~aWa~YF~---------------------------~~ni~~vf~SA~~  244 (562)
T KOG1424|consen  207 ANVLLVNKADLLPPEQRVAWAEYFR---------------------------QNNIPVVFFSALA  244 (562)
T ss_pred             ceEEEEehhhcCCHHHHHHHHHHHH---------------------------hcCceEEEEeccc
Confidence            3689999999999998889974332                           1358999999887

>KOG0410|consensus

Probab=90.09  E-value=0.17  Score=44.52  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=22.0

Q ss_pred             EEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          64 VVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        64 vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      .++|||.||.|+++|.+++..++.
T Consensus       318 ~v~isaltgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  318 DVGISALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             ccccccccCccHHHHHHHHHHHhh
Confidence            789999999999999999988764

>KOG0079|consensus

Probab=89.63  E-value=0.76  Score=36.59  Aligned_cols=58  Identities=14%  Similarity=0.067  Sum_probs=39.5

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      .+|-|+|-||.|..+......     +   +|-        .+..+         .+++++..||+..++++..|..|.+
T Consensus       112 sv~~vLVGNK~d~~~RrvV~t-----~---dAr--------~~A~~---------mgie~FETSaKe~~NvE~mF~cit~  166 (198)
T KOG0079|consen  112 SVPKVLVGNKNDDPERRVVDT-----E---DAR--------AFALQ---------MGIELFETSAKENENVEAMFHCITK  166 (198)
T ss_pred             cccceecccCCCCccceeeeh-----H---HHH--------HHHHh---------cCchheehhhhhcccchHHHHHHHH
Confidence            368899999999865433210     0   110        01111         2689999999999999999999987


Q ss_pred             HHH
Q psy7275          85 AGE   87 (150)
Q Consensus        85 ~~~   87 (150)
                      .+-
T Consensus       167 qvl  169 (198)
T KOG0079|consen  167 QVL  169 (198)
T ss_pred             HHH
Confidence            663

>KOG0070|consensus

Probab=89.19  E-value=1  Score=36.07  Aligned_cols=60  Identities=22%  Similarity=0.207  Sum_probs=39.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc-CCcEEEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS-TLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~-~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..|+++..||.|+.++-.+.+       +.+.+.                ++++.. .-.+-+.+|.+|+|+.|-++.+.
T Consensus       118 ~~~llv~aNKqD~~~als~~e-------i~~~L~----------------l~~l~~~~w~iq~~~a~~G~GL~egl~wl~  174 (181)
T KOG0070|consen  118 NAPLLVFANKQDLPGALSAAE-------ITNKLG----------------LHSLRSRNWHIQSTCAISGEGLYEGLDWLS  174 (181)
T ss_pred             CceEEEEechhhccccCCHHH-------HHhHhh----------------hhccCCCCcEEeeccccccccHHHHHHHHH
Confidence            469999999999876533211       112221                222222 23778899999999999999888


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       175 ~~~~  178 (181)
T KOG0070|consen  175 NNLK  178 (181)
T ss_pred             HHHh
Confidence            7654

>KOG0075|consensus

Probab=89.04  E-value=0.89  Score=36.10  Aligned_cols=61  Identities=18%  Similarity=0.157  Sum_probs=40.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +++|+++.-||+|+.++-...       ++.+.+.                |... -..+-++.||++...+||-..+.+
T Consensus       121 ~gip~LVLGnK~d~~~AL~~~-------~li~rmg----------------L~sitdREvcC~siScke~~Nid~~~~Wl  177 (186)
T KOG0075|consen  121 TGIPLLVLGNKIDLPGALSKI-------ALIERMG----------------LSSITDREVCCFSISCKEKVNIDITLDWL  177 (186)
T ss_pred             cCCcEEEecccccCcccccHH-------HHHHHhC----------------ccccccceEEEEEEEEcCCccHHHHHHHH
Confidence            467999999999997653221       1111111                1111 123578999999999999999999


Q ss_pred             HHHHH
Q psy7275          83 KLAGE   87 (150)
Q Consensus        83 ~e~~~   87 (150)
                      .+...
T Consensus       178 i~hsk  182 (186)
T KOG0075|consen  178 IEHSK  182 (186)
T ss_pred             HHHhh
Confidence            87653

>KOG0091|consensus

Probab=88.65  E-value=1.9  Score=34.80  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=23.3

Q ss_pred             cCCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          60 STLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        60 ~~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .++.+|..||++|.++++-+.-|...+
T Consensus       146 hgM~FVETSak~g~NVeEAF~mlaqeI  172 (213)
T KOG0091|consen  146 HGMAFVETSAKNGCNVEEAFDMLAQEI  172 (213)
T ss_pred             cCceEEEecccCCCcHHHHHHHHHHHH
Confidence            467999999999999999988887655

>KOG3905|consensus

Probab=88.46  E-value=2  Score=38.27  Aligned_cols=68  Identities=18%  Similarity=0.220  Sum_probs=43.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      +++|++||.+|+|.++--..   -.||-  .+.    ..|..+..|..+|.    | +...|..|++...+++-|+..|.
T Consensus       221 lGi~vlVV~TK~D~~s~lek---e~eyr--Deh----fdfiq~~lRkFCLr----~-GaaLiyTSvKE~KNidllyKYiv  286 (473)
T KOG3905|consen  221 LGIPVLVVCTKCDAVSVLEK---EHEYR--DEH----FDFIQSHLRKFCLR----Y-GAALIYTSVKETKNIDLLYKYIV  286 (473)
T ss_pred             CCCcEEEEEeccchhhHhhh---cchhh--HHH----HHHHHHHHHHHHHH----c-CceeEEeecccccchHHHHHHHH
Confidence            68999999999998432110   00110  011    13444555555544    2 46788999999999999998886


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      ..
T Consensus       287 hr  288 (473)
T KOG3905|consen  287 HR  288 (473)
T ss_pred             HH
Confidence            53

>KOG1707|consensus

Probab=88.18  E-value=0.25  Score=46.05  Aligned_cols=74  Identities=16%  Similarity=0.052  Sum_probs=48.5

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|-||+|..+....    .+ |                 ..+.-++.+|-.--.+|.+||++-..+.|+|..-++
T Consensus       115 ~~PVILvGNK~d~~~~~~~----s~-e-----------------~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqK  172 (625)
T KOG1707|consen  115 ETPVILVGNKSDNGDNENN----SD-E-----------------VNTLPIMIAFAEIETCIECSALTLANVSELFYYAQK  172 (625)
T ss_pred             cCCEEEEeeccCCcccccc----ch-h-----------------HHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhh
Confidence            6799999999998754431    00 0                 011123334443347889999999999999999988


Q ss_pred             HH-HHHHhhhHHHHHHH
Q psy7275          85 AG-EDYEKNYRVEWIRL  100 (150)
Q Consensus        85 ~~-~ey~~~y~pe~e~~  100 (150)
                      ++ ..-...|-++=+.+
T Consensus       173 aVihPt~PLyda~~qel  189 (625)
T KOG1707|consen  173 AVIHPTSPLYDAEEQEL  189 (625)
T ss_pred             eeeccCccccccccccc
Confidence            77 44455665553333

>KOG0083|consensus

Probab=88.11  E-value=0.39  Score=37.66  Aligned_cols=32  Identities=16%  Similarity=0.115  Sum_probs=25.5

Q ss_pred             HHhhcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q psy7275          56 DEFYSTLKVVGFSSVSGEGTEELLQLIKLAGED   88 (150)
Q Consensus        56 ~efy~~l~vv~VSA~TGeGideL~~~I~e~~~e   88 (150)
                      .+-| ++++...||+||-++|--|-+|.+....
T Consensus       130 a~~y-~ipfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen  130 AEAY-GIPFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             HHHH-CCCceeccccccccHhHHHHHHHHHHHH
Confidence            3445 6999999999999999888888765543

>KOG0393|consensus

Probab=87.63  E-value=1.3  Score=35.98  Aligned_cols=71  Identities=17%  Similarity=0.199  Sum_probs=40.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      -+.|+|+|.+|.||.+....          .+.+...  .....+.+=...+.........+..||++..|+.+.|+.-.
T Consensus       108 p~vpiiLVGtk~DLr~d~~~----------~~~l~~~--~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~  175 (198)
T KOG0393|consen  108 PNVPIILVGTKADLRDDPST----------LEKLQRQ--GLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAI  175 (198)
T ss_pred             CCCCEEEEeehHHhhhCHHH----------HHHHHhc--cCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHH
Confidence            46899999999999743211          1111100  00000000011122223346889999999999988887766


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      ..+
T Consensus       176 ~~~  178 (198)
T KOG0393|consen  176 RAA  178 (198)
T ss_pred             HHH
Confidence            554

>PRK07560 elongation factor EF-2; Reviewed

Probab=86.73  E-value=1.4  Score=41.66  Aligned_cols=19  Identities=5%  Similarity=0.006  Sum_probs=15.3

Q ss_pred             CCCCCEEEeeecCCCCCch
Q psy7275           3 DTGFPYTELVVGIDIVNHK   21 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~   21 (150)
                      +.++|.|+++||+|....+
T Consensus       137 ~~~~~~iv~iNK~D~~~~~  155 (731)
T PRK07560        137 RERVKPVLFINKVDRLIKE  155 (731)
T ss_pred             HcCCCeEEEEECchhhccc
Confidence            4578999999999987544

>KOG0463|consensus

Probab=86.49  E-value=0.52  Score=42.60  Aligned_cols=77  Identities=22%  Similarity=0.230  Sum_probs=44.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhch-hhhhhhHHHHHHHH---HHhhc--CCcEEEeecCCCCCHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADS-SYISNLTRSMSLAL---DEFYS--TLKVVGFSSVSGEGTEE   77 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~-~y~~~L~~slsl~l---~efy~--~l~vv~VSA~TGeGide   77 (150)
                      +..|+.+|++|||.+++....|-|....   ..+.... --.--+.+++--+.   ..|-+  --+++.||.+||++++-
T Consensus       272 L~VPVfvVVTKIDMCPANiLqEtmKll~---rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L  348 (641)
T KOG0463|consen  272 LHVPVFVVVTKIDMCPANILQETMKLLT---RLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL  348 (641)
T ss_pred             hcCcEEEEEEeeccCcHHHHHHHHHHHH---HHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH
Confidence            5679999999999999888777664433   3332110 00001222221111   12221  13889999999999976


Q ss_pred             HHHHHH
Q psy7275          78 LLQLIK   83 (150)
Q Consensus        78 L~~~I~   83 (150)
                      |...+.
T Consensus       349 LkmFLN  354 (641)
T KOG0463|consen  349 LKMFLN  354 (641)
T ss_pred             HHHHHh
Confidence            655443

>KOG0090|consensus

Probab=85.88  E-value=1.5  Score=36.52  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=19.5

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      +.+.+-|+++| +++++.+.|.++
T Consensus       215 V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  215 VTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             eEEeecccCcC-ChHHHHHHHHHh
Confidence            46788899999 999999988765

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=85.80  E-value=2.2  Score=38.71  Aligned_cols=68  Identities=15%  Similarity=0.215  Sum_probs=41.6

Q ss_pred             CCCCEEEeeecCCCCCchh-hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKY-AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~-~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +++|++||.+|+|....-. -..|-+.          ...|+...+|.+++-     .+...|.+|++...+++-|+..|
T Consensus       195 lGipi~VV~tksD~~~~Lek~~~~~~e----------~~DfIqq~LR~~cL~-----yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  195 LGIPIVVVCTKSDKIETLEKETDWKEE----------HFDFIQQYLRTFCLK-----YGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             cCcceEEEEecccHHHHHhhhcccchh----------hHHHHHHHHHHHHHh-----cCCeEEEeeccccccHHHHHHHH
Confidence            5789999999999743110 0112211          012333344554433     25678888999999998888777


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      ...+
T Consensus       260 ~h~l  263 (472)
T PF05783_consen  260 LHRL  263 (472)
T ss_pred             HHHh
Confidence            6544

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG2484|consensus

Probab=85.62  E-value=0.82  Score=41.03  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=19.9

Q ss_pred             CCEEEeeecCCCCCchhhHHHh
Q psy7275           6 FPYTELVVGIDIVNHKYAIEWM   27 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~~~~ewm   27 (150)
                      .-.|+|+||+|+++.+...+|+
T Consensus       178 KkLILVLNK~DLVPrEv~e~Wl  199 (435)
T KOG2484|consen  178 KKLILVLNKIDLVPREVVEKWL  199 (435)
T ss_pred             ceEEEEeehhccCCHHHHHHHH
Confidence            4589999999999999988998

>KOG0097|consensus

Probab=84.86  E-value=3  Score=33.03  Aligned_cols=20  Identities=20%  Similarity=0.336  Sum_probs=16.5

Q ss_pred             cCCcEEEeecCCCCCHHHHH
Q psy7275          60 STLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus        60 ~~l~vv~VSA~TGeGideL~   79 (150)
                      +++-++..||+||+++++-|
T Consensus       146 ngl~fle~saktg~nvedaf  165 (215)
T KOG0097|consen  146 NGLMFLEASAKTGQNVEDAF  165 (215)
T ss_pred             cCeEEEEecccccCcHHHHH
Confidence            36788999999999997644

>KOG2486|consensus

Probab=83.14  E-value=0.31  Score=41.99  Aligned_cols=25  Identities=32%  Similarity=0.251  Sum_probs=20.1

Q ss_pred             cCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275          60 STLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus        60 ~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..++-+.||+.|+.|++.|+--|..
T Consensus       289 ~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  289 VDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ccCCceeeecccccCceeeeeehhh
Confidence            3467788999999999998766654

>KOG2485|consensus

Probab=81.81  E-value=8.8  Score=33.55  Aligned_cols=80  Identities=19%  Similarity=0.193  Sum_probs=43.5

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHH------HHHHHHhhc-hhhhhhhHHHH---HHHHHHhhc---CCcEEEeecCC
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFE------VFQEALEAD-SSYISNLTRSM---SLALDEFYS---TLKVVGFSSVS   71 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e------~f~eal~~e-~~y~~~L~~sl---sl~l~efy~---~l~vv~VSA~T   71 (150)
                      ..|-|+|+||+||.++......|+-++      .+......+ .-..+++...+   +..+..|..   .-..+.|=.+-
T Consensus        73 ~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvP  152 (335)
T KOG2485|consen   73 PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVP  152 (335)
T ss_pred             CCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCC
Confidence            458899999999998655443332221      111111111 11122222222   223334443   23567788889


Q ss_pred             CCCHHHHHHHHHH
Q psy7275          72 GEGTEELLQLIKL   84 (150)
Q Consensus        72 GeGideL~~~I~e   84 (150)
                      +.|-..|++++..
T Consensus       153 NVGKSsLINa~r~  165 (335)
T KOG2485|consen  153 NVGKSSLINALRN  165 (335)
T ss_pred             CCChHHHHHHHHH
Confidence            9999999996654

>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins

Probab=81.65  E-value=1.3  Score=32.72  Aligned_cols=37  Identities=19%  Similarity=0.138  Sum_probs=12.8

Q ss_pred             hcCCcEEEeecCCCCCHHHHHHHHHHHHHHHHhhhHH---HHHHHHH
Q psy7275          59 YSTLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNYRV---EWIRLRD  102 (150)
Q Consensus        59 y~~l~vv~VSA~TGeGideL~~~I~e~~~ey~~~y~p---e~e~~~~  102 (150)
                      |.+..+|++||..       --++.++...-.-+|.|   +++-...
T Consensus        21 ~~~~~vVp~SA~a-------El~Lr~a~k~g~I~Y~pGd~~F~i~~~   60 (109)
T PF08438_consen   21 YPDEPVVPTSAAA-------ELALRKAAKAGLIDYIPGDSDFEITDD   60 (109)
T ss_dssp             HTT-EEEEE-HHH-------HHHHHS-SSS----S------------
T ss_pred             CCCCceeeccHHH-------HHHHHHHHHCCCEEeCCCCCceEeecc
Confidence            5678999999853       22344444444455666   4554443

; PDB: 1WXQ_A.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=80.59  E-value=3.8  Score=36.00  Aligned_cols=20  Identities=20%  Similarity=0.478  Sum_probs=13.9

Q ss_pred             CCC-EEEeeecCCCCCchhhH
Q psy7275           5 GFP-YTELVVGIDIVNHKYAI   24 (150)
Q Consensus         5 ~lP-~IlV~NKiDl~~~~~~~   24 (150)
                      +.| +|+++||+|+++.+...
T Consensus       127 Gvp~ivvflnK~Dmvdd~ell  147 (394)
T COG0050         127 GVPYIVVFLNKVDMVDDEELL  147 (394)
T ss_pred             CCcEEEEEEecccccCcHHHH
Confidence            456 45667999999865543

---

Homologous Structure Templates

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	1e-17

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262

 Score = 76.3 bits (187), Expect = 1e-17
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 1   MYDTGFPYTELVVGIDIV---NHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDE 57
               G      +  +D++     +   ++ +D +     L+ D S    +   M   + E
Sbjct: 167 DLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTE 226

Query: 58  FYSTLKVVGFSSVSGEGTEELLQLIKLA---GED 88
               ++V+  S+ + EG E+L  L         D
Sbjct: 227 VLPPVRVLYLSAKTREGFEDLETLAYEHYCTCGD 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.65
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.62
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.6
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.59
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.52
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.52
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.47
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.47
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.46
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.46
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.44
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.42
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.42
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.4
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.38
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.38
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.38
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.37
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.37
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.37
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.37
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.36
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.36
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.35
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.35
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.35
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.35
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.34
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.34
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.34
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.33
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.33
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.32
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.31
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.31
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.31
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.31
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.3
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.28
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.28
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.28
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.28
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.28
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.27
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.27
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.27
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.27
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.26
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.26
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.26
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.26
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.26
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.26
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.26
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.26
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.25
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.25
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.25
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.24
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.24
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.24
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.24
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.23
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.23
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.23
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.23
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.22
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.22
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.22
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.22
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.21
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.21
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.21
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.2
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.2
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.19
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.19
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.19
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.18
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.18
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.18
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.17
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.17
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.16
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.16
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.15
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.15
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.15
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.15
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.15
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.14
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.13
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.13
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.13
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.12
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.12
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.11
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.11
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.1
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.1
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.09
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.09
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.09
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.08
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.07
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.33
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.06
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.04
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.04
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.03
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.03
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.02
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.02
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.02
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.0
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.99
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.98
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.98
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	97.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	97.97
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	97.97
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.97
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.96
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	97.94
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.94
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.92
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	97.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.87
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.82
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.82
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	97.81
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.8
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.78
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.76
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.75
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	97.75
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.74
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	97.74
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	97.73
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	97.73
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.71
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	97.69
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.69
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.67
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.67
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.66
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.55
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.54
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	97.53
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.49
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.48
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.48
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.47
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	97.42
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.4
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.38
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	97.37
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	97.35
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.32
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	97.29
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.26
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.26
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.22
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.17
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.15
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.15
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.11
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.11
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.1
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.06
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.04
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.01
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.91
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.87
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	96.81
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	96.8
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.72
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	96.71
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.66
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	96.66
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.57
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	96.57
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.45
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.43
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.35
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	96.29
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	96.24
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	96.18
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	96.08
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	96.0
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	95.97
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	95.71
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	95.66
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	95.09
1wxq_A	397	GTP-binding protein; structural genomics, riken st	94.87
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	94.81
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	94.56
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	94.5
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	93.71
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	92.97
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	92.5
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	92.46
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	92.44
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	90.15
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	83.38
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	82.9
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	80.65

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.65  E-value=1.9e-08  Score=73.65  Aligned_cols=64  Identities=6%  Similarity=0.099  Sum_probs=44.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....+..   ..+.                     ..+  +.+++.+||++|.|+++++..|.
T Consensus       108 ~~~p~i~v~nK~Dl~~~~~~~~~~---~~~~---------------------~~~--~~~~~~~Sa~~g~gi~~l~~~l~  161 (189)
T 4dsu_A          108 EDVPMVLVGNKCDLPSRTVDTKQA---QDLA---------------------RSY--GIPFIETSAKTRQGVDDAFYTLV  161 (189)
T ss_dssp             SCCCEEEEEECTTSSSCSSCHHHH---HHHH---------------------HHH--TCCEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEEECccCcccccCHHHH---HHHH---------------------HHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence            478999999999997543321111   0000                     011  46899999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy7275          84 LAGEDYEKNY   93 (150)
Q Consensus        84 e~~~ey~~~y   93 (150)
                      +.+.+....+
T Consensus       162 ~~~~~~~~~~  171 (189)
T 4dsu_A          162 REIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhhhhc
Confidence            8886655443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.62  E-value=1.5e-07  Score=73.60  Aligned_cols=83  Identities=17%  Similarity=0.245  Sum_probs=56.4

Q ss_pred             CCCCEEEeeecCCCCCchh---hHHHhhcHHHHHHHHhhc---hhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKY---AIEWMQDFEVFQEALEAD---SSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEE   77 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~---~~ewm~D~e~f~eal~~e---~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGide   77 (150)
                      .++|+++|+||+|+.+...   ..+|+++++.+.+.+..+   ..|.. +  ++...+.++....+++++||++|+|+++
T Consensus       170 ~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~--~l~~~~~~~~~~~~~~~~SA~~~~gi~~  246 (262)
T 1yrb_A          170 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMA-Y--KMCSMMTEVLPPVRVLYLSAKTREGFED  246 (262)
T ss_dssp             HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHH-H--HHHHHHHHHSCCCCCEECCTTTCTTHHH
T ss_pred             cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhH-h--HHHHHHHHhcCcccceEEEecCcccHHH
Confidence            4689999999999876542   245666666555544211   12222 1  3333445665556899999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy7275          78 LLQLIKLAGEDY   89 (150)
Q Consensus        78 L~~~I~e~~~ey   89 (150)
                      |++.|.+...+.
T Consensus       247 l~~~i~~~~~~~  258 (262)
T 1yrb_A          247 LETLAYEHYCTC  258 (262)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhccc
Confidence            999998877543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.60  E-value=8e-08  Score=70.64  Aligned_cols=62  Identities=26%  Similarity=0.414  Sum_probs=42.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.+......+..   .+.+                   ..+...+++.+||++|+|++++++.|.
T Consensus       132 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~---~~~~-------------------~~~~~~~~~~~Sa~~~~gv~~l~~~l~  189 (195)
T 3pqc_A          132 LNIPFTIVLTKMDKVKMSERAKKLEEH---RKVF-------------------SKYGEYTIIPTSSVTGEGISELLDLIS  189 (195)
T ss_dssp             TTCCEEEEEECGGGSCGGGHHHHHHHH---HHHH-------------------HSSCCSCEEECCTTTCTTHHHHHHHHH
T ss_pred             cCCCEEEEEEChhcCChHHHHHHHHHH---HHHH-------------------hhcCCCceEEEecCCCCCHHHHHHHHH
Confidence            368999999999998655432221111   1110                   112346999999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       190 ~~l~  193 (195)
T 3pqc_A          190 TLLK  193 (195)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            7663

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.59  E-value=1e-07  Score=71.00  Aligned_cols=60  Identities=8%  Similarity=0.120  Sum_probs=41.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+......                  ..+  +++++.+||++|.|+++++..|.
T Consensus       118 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~~--~~~~~~~Sa~~g~gi~~l~~~l~  172 (206)
T 2bov_A          118 ENVPFLLVGNKSDLEDKRQV-----SVEEAKNRA------------------EQW--NVNYVETSAKTRANVDKVFFDLM  172 (206)
T ss_dssp             SCCCEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HHH--TCEEEEECTTTCTTHHHHHHHHH
T ss_pred             CCCCEEEEEeccCccccccc-----cHHHHHHHH------------------HHh--CCeEEEEeCCCCCCHHHHHHHHH
Confidence            47899999999998653221     011111110                  111  46899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       173 ~~i~~  177 (206)
T 2bov_A          173 REIRA  177 (206)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.52  E-value=4.2e-07  Score=75.95  Aligned_cols=64  Identities=22%  Similarity=0.198  Sum_probs=42.5

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-----cCCcEEEeecCCCCCHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-----STLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-----~~l~vv~VSA~TGeGideL~   79 (150)
                      ++|.|+|+||+|+.+.........++   ...                  +..+.     ...++++|||++|+|+++|+
T Consensus       217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l---~~~------------------l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~  275 (355)
T 3p32_A          217 ELADIVVVNKADGEHHKEARLAAREL---SAA------------------IRLIYPREALWRPPVLTMSAVEGRGLAELW  275 (355)
T ss_dssp             GGCSEEEEECCCGGGHHHHHHHHHHH---HHH------------------HHHHSTTCCSCCCCEEEEBGGGTBSHHHHH
T ss_pred             hcCCEEEEECCCCcChhHHHHHHHHH---HHH------------------HhhccccccCCCCceEEEEcCCCCCHHHHH
Confidence            35999999999986543322211111   111                  11111     13689999999999999999


Q ss_pred             HHHHHHHHHH
Q psy7275          80 QLIKLAGEDY   89 (150)
Q Consensus        80 ~~I~e~~~ey   89 (150)
                      +.|.+.+.+.
T Consensus       276 ~~i~~~~~~~  285 (355)
T 3p32_A          276 DTVERHRQVL  285 (355)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.52  E-value=1.7e-08  Score=82.93  Aligned_cols=97  Identities=12%  Similarity=0.128  Sum_probs=59.2

Q ss_pred             CCCCCEEEeeecCCCC-CchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIV-NHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~-~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~   81 (150)
                      +.++|+|+|+||+|+. +.....+++.       .+.                 ..+....++++|||++|.|+++|++.
T Consensus       120 ~~~~pvilV~NK~Dl~~~~~~~~~~~~-------~l~-----------------~~~~~~~~i~~vSA~~g~gv~~L~~~  175 (308)
T 3iev_A          120 PLNKPVIVVINKIDKIGPAKNVLPLID-------EIH-----------------KKHPELTEIVPISALKGANLDELVKT  175 (308)
T ss_dssp             GGCCCEEEEEECGGGSSSGGGGHHHHH-------HHH-----------------HHCTTCCCEEECBTTTTBSHHHHHHH
T ss_pred             hcCCCEEEEEECccCCCCHHHHHHHHH-------HHH-----------------HhccCCCeEEEEeCCCCCCHHHHHHH
Confidence            3578999999999997 4443333221       111                 11113468999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhhCCCCC
Q psy7275          82 IKLAGEDYEKNYRVEWIRLRDEKAKSEQLEKREQHFALPTPQ  123 (150)
Q Consensus        82 I~e~~~ey~~~y~pe~e~~~~~~~~~~~~~~~~~~~~l~~~~  123 (150)
                      |.+.+.+....|.++.-.-+.++....+.-+++-+..+...+
T Consensus       176 l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~ei  217 (308)
T 3iev_A          176 ILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEV  217 (308)
T ss_dssp             HHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTH
T ss_pred             HHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhc
Confidence            999887655555432211112222223333445566666554

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.47  E-value=2.6e-07  Score=70.09  Aligned_cols=63  Identities=25%  Similarity=0.326  Sum_probs=44.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-----hcCCcEEEeecCCCCCHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-----YSTLKVVGFSSVSGEGTEEL   78 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-----y~~l~vv~VSA~TGeGideL   78 (150)
                      .++|+|+|+||+|+.+.....++....   .+.                  +..+     ....+++++||++|.|++++
T Consensus       143 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~---~~~------------------l~~~~~~~~~~~~~~~~~SA~~g~gv~~l  201 (223)
T 4dhe_A          143 TGKPIHSLLTKCDKLTRQESINALRAT---QKS------------------LDAYRDAGYAGKLTVQLFSALKRTGLDDA  201 (223)
T ss_dssp             GCCCEEEEEECGGGSCHHHHHHHHHHH---HHH------------------HHHHHHHTCCSCEEEEEEBTTTTBSHHHH
T ss_pred             cCCCEEEEEeccccCChhhHHHHHHHH---HHH------------------HHhhhhcccCCCCeEEEeecCCCcCHHHH
Confidence            568999999999998755432222111   111                  1122     24568999999999999999


Q ss_pred             HHHHHHHHH
Q psy7275          79 LQLIKLAGE   87 (150)
Q Consensus        79 ~~~I~e~~~   87 (150)
                      ++.|.+.+.
T Consensus       202 ~~~l~~~~~  210 (223)
T 4dhe_A          202 HALIESWLR  210 (223)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999987763

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.47  E-value=3.6e-07  Score=66.01  Aligned_cols=59  Identities=14%  Similarity=0.002  Sum_probs=39.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+.....     .+....           +       ...+  +.+++.+||++|.|+++++..|.+
T Consensus       111 ~~piilv~NK~Dl~~~~~v~-----~~~~~~-----------~-------~~~~--~~~~~~~Sa~~g~gi~~l~~~l~~  165 (175)
T 2nzj_A          111 HVPIILVGNKADLARCREVS-----VEEGRA-----------C-------AVVF--DCKFIETSATLQHNVAELFEGVVR  165 (175)
T ss_dssp             -CCEEEEEECTTCTTTCCSC-----HHHHHH-----------H-------HHHH--TSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCCEEEEEEChhhccccccC-----HHHHHH-----------H-------HHHc--CCeEEEEecCCCCCHHHHHHHHHH
Confidence            68999999999997543210     000000           0       0011  468999999999999999999987


Q ss_pred             HHHH
Q psy7275          85 AGED   88 (150)
Q Consensus        85 ~~~e   88 (150)
                      .+.+
T Consensus       166 ~~~~  169 (175)
T 2nzj_A          166 QLRL  169 (175)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.46  E-value=3.9e-07  Score=65.45  Aligned_cols=60  Identities=12%  Similarity=-0.021  Sum_probs=41.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....     .+.. ..+                  .. ..+.+++.+||++|+|++++++.|.
T Consensus       105 ~~~p~ilv~nK~Dl~~~~~~~-----~~~~-~~~------------------~~-~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A          105 DDVPIILVGNKSDLVRSREVS-----VDEG-RAC------------------AV-VFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             -CCCEEEEEECTTCCSSCCSC-----HHHH-HHH------------------HH-HTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             CCCCEEEEEeccccccccccC-----HHHH-HHH------------------HH-HhCCcEEEeccCCCCCHHHHHHHHH
Confidence            468999999999997643221     0000 000                  01 1246899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       160 ~~~~~  164 (166)
T 3q72_A          160 RQIRL  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.46  E-value=5e-07  Score=66.70  Aligned_cols=62  Identities=11%  Similarity=0.151  Sum_probs=42.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....+      ...+..                  .++  +++++.+||++|.|+++++..|.
T Consensus       125 ~~~p~ilv~nK~Dl~~~~~~~~------~~~~~~------------------~~~--~~~~~~~Sa~~~~gi~~l~~~l~  178 (190)
T 3con_A          125 DDVPMVLVGNKCDLPTRTVDTK------QAHELA------------------KSY--GIPFIETSAKTRQGVEDAFYTLV  178 (190)
T ss_dssp             SCCCEEEEEECTTCSCCCSCHH------HHHHHH------------------HHH--TCCEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCeEEEEEECCcCCcccCCHH------HHHHHH------------------HHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence            3689999999999876322111      111111                  111  46899999999999999999999


Q ss_pred             HHHHHHHh
Q psy7275          84 LAGEDYEK   91 (150)
Q Consensus        84 e~~~ey~~   91 (150)
                      +.+.++..
T Consensus       179 ~~~~~~~~  186 (190)
T 3con_A          179 REIRQYRM  186 (190)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHH
Confidence            88766543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.44  E-value=4e-07  Score=65.91  Aligned_cols=61  Identities=11%  Similarity=-0.086  Sum_probs=41.3

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+.....     .+......                  ..  .+.+++.+||++|.|++++++.|.+
T Consensus       113 ~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~~  167 (181)
T 3tw8_B          113 DVCRILVGNKNDDPERKVVE-----TEDAYKFA------------------GQ--MGIQLFETSAKENVNVEEMFNCITE  167 (181)
T ss_dssp             TSEEEEEEECTTCGGGCCSC-----HHHHHHHH------------------HH--HTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchhcccC-----HHHHHHHH------------------HH--cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999986543210     00000000                  01  1468999999999999999999988


Q ss_pred             HHHHHH
Q psy7275          85 AGEDYE   90 (150)
Q Consensus        85 ~~~ey~   90 (150)
                      .+.+..
T Consensus       168 ~~~~~~  173 (181)
T 3tw8_B          168 LVLRAK  173 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            775443

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.42  E-value=5.4e-07  Score=66.66  Aligned_cols=62  Identities=18%  Similarity=0.275  Sum_probs=43.1

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh--hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF--YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef--y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ++|+|+|+||+|+.+.....++.       +.+.                +..+  ....+++.+||++|+|++++++.|
T Consensus       127 ~~piilv~NK~Dl~~~~~~~~~~-------~~~~----------------~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  183 (199)
T 4bas_A          127 RVPFLFFANKMDAAGAKTAAELV-------EILD----------------LTTLMGDHPFVIFASNGLKGTGVHEGFSWL  183 (199)
T ss_dssp             BCCEEEEEECTTSTTCCCHHHHH-------HHHT----------------HHHHHTTSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             CCCEEEEEECcCCCCCCCHHHHH-------HHhc----------------chhhccCCeeEEEEeeCCCccCHHHHHHHH
Confidence            78999999999997663322211       2111                0011  134689999999999999999999


Q ss_pred             HHHHHHH
Q psy7275          83 KLAGEDY   89 (150)
Q Consensus        83 ~e~~~ey   89 (150)
                      .+.+.+.
T Consensus       184 ~~~~~~~  190 (199)
T 4bas_A          184 QETASRQ  190 (199)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.42  E-value=1.1e-07  Score=70.46  Aligned_cols=65  Identities=12%  Similarity=0.050  Sum_probs=43.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+.....+.      ....                  ...+  +++++.+||++|.|++++++.|.+
T Consensus       114 ~~piilv~nK~Dl~~~~~~~~~------~~~~------------------~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~  167 (199)
T 2gf0_A          114 DIPVMLVGNKCDETQREVDTRE------AQAV------------------AQEW--KCAFMETSAKMNYNVKELFQELLT  167 (199)
T ss_dssp             GSCEEEEEECTTCSSCSSCHHH------HHHH------------------HHHH--TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCCEEEEEECccCCccccCHHH------HHHH------------------HHHh--CCeEEEEecCCCCCHHHHHHHHHH
Confidence            6799999999999753321110      0000                  0011  368999999999999999999988


Q ss_pred             HHHHHHhhhHH
Q psy7275          85 AGEDYEKNYRV   95 (150)
Q Consensus        85 ~~~ey~~~y~p   95 (150)
                      .+.+......+
T Consensus       168 ~~~~~~~~~~~  178 (199)
T 2gf0_A          168 LETRRNMSLNI  178 (199)
T ss_dssp             HCSSSCEECC-
T ss_pred             HHhhhhccccc
Confidence            77655444444

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.40  E-value=5.5e-07  Score=64.35  Aligned_cols=59  Identities=12%  Similarity=0.023  Sum_probs=40.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+....     ..+......                  .. +...+++.+||++|.|+++++..|.
T Consensus       107 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~-~~~~~~~~~Sa~~~~gi~~l~~~l~  162 (167)
T 1c1y_A          107 EDVPMILVGNKCDLEDERVV-----GKEQGQNLA------------------RQ-WCNCAFLESSAKSKINVNEIFYDLV  162 (167)
T ss_dssp             SCCCEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH-TTSCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCcEEEEEECccccccccC-----CHHHHHHHH------------------HH-ccCCcEEEecCCCCCCHHHHHHHHH
Confidence            47899999999998653221     011111100                  11 2357899999999999999999998


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       163 ~~i  165 (167)
T 1c1y_A          163 RQI  165 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.38  E-value=1.1e-06  Score=62.14  Aligned_cols=57  Identities=11%  Similarity=0.096  Sum_probs=40.1

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+++|+||+|+.+.....+.      ..+..                  .++  +++++.+||++|.|+++++..|.+
T Consensus       108 ~~p~iiv~nK~Dl~~~~~~~~~------~~~~~------------------~~~--~~~~~~~Sa~~~~gi~~l~~~l~~  161 (166)
T 2ce2_X          108 DVPMVLVGNKSDLAARTVESRQ------AQDLA------------------RSY--GIPYIETSAKTRQGVEDAFYTLVR  161 (166)
T ss_dssp             CCCEEEEEECTTCSCCCSCHHH------HHHHH------------------HHH--TCCEEEECTTTCTTHHHHHHHHHH
T ss_pred             CCcEEEEEEchhhhhcccCHHH------HHHHH------------------HHc--CCeEEEecCCCCCCHHHHHHHHHH
Confidence            7899999999999764321110      01100                  111  468999999999999999999987


Q ss_pred             HHH
Q psy7275          85 AGE   87 (150)
Q Consensus        85 ~~~   87 (150)
                      .+.
T Consensus       162 ~~~  164 (166)
T 2ce2_X          162 EIR  164 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.38  E-value=4.9e-07  Score=65.92  Aligned_cols=29  Identities=7%  Similarity=-0.003  Sum_probs=24.9

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey   89 (150)
                      ..+++.+||++|.|+++++..|.+.+.+.
T Consensus       142 ~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          142 RCSYYETXATYGLNVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             SEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeccccCCHHHHHHHHHHHHHHH
Confidence            46899999999999999999998776443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.38  E-value=5.8e-07  Score=65.05  Aligned_cols=62  Identities=13%  Similarity=0.081  Sum_probs=42.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....     .+.. ..+.                  . ..+.+++.+||++|.|++++++.|.
T Consensus       113 ~~~piilv~nK~Dl~~~~~v~-----~~~~-~~~~------------------~-~~~~~~~~~Sa~~~~gv~~l~~~l~  167 (181)
T 2fn4_A          113 DDFPVVLVGNKADLESQRQVP-----RSEA-SAFG------------------A-SHHVAYFEASAKLRLNVDEAFEQLV  167 (181)
T ss_dssp             SCCCEEEEEECGGGGGGCCSC-----HHHH-HHHH------------------H-HTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCCEEEEEECcccccccccC-----HHHH-HHHH------------------H-HcCCeEEEecCCCCCCHHHHHHHHH
Confidence            478999999999986532210     0000 0000                  0 1256899999999999999999998


Q ss_pred             HHHHHHH
Q psy7275          84 LAGEDYE   90 (150)
Q Consensus        84 e~~~ey~   90 (150)
                      +.+.++.
T Consensus       168 ~~~~~~~  174 (181)
T 2fn4_A          168 RAVRKYQ  174 (181)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            8776543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.37  E-value=7.3e-07  Score=64.87  Aligned_cols=60  Identities=8%  Similarity=0.082  Sum_probs=40.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+...+..                  .+  .+++++.+||++|.|+++++..|.
T Consensus       122 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  176 (187)
T 2a9k_A          122 ENVPFLLVGNKSDLEDKRQV-----SVEEAKNRA------------------EQ--WNVNYVETSAKTRANVDKVFFDLM  176 (187)
T ss_dssp             TTCCEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCCEEEEEECccccccCcc-----CHHHHHHHH------------------HH--cCCeEEEeCCCCCCCHHHHHHHHH
Confidence            37899999999998653221     011111111                  11  146899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       177 ~~i~~  181 (187)
T 2a9k_A          177 REIRA  181 (187)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.37  E-value=8.8e-08  Score=70.55  Aligned_cols=73  Identities=19%  Similarity=0.156  Sum_probs=42.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.......   .+.+.+.+                     ++  +.+++.+||++|.|+++++..|.
T Consensus       111 ~~~piilv~nK~Dl~~~~~~~---~~~~~~~~---------------------~~--~~~~~~~Sa~~~~~v~~l~~~i~  164 (188)
T 2wjg_A          111 MGANLLLALNKMDLAKSLGIE---IDVDKLEK---------------------IL--GVKVVPLSAAKKMGIEELKKAIS  164 (188)
T ss_dssp             TTCCEEEEEECHHHHHHTTCC---CCHHHHHH---------------------HH--TSCEEECBGGGTBSHHHHHHHHH
T ss_pred             cCCCEEEEEEhhhccccccch---HHHHHHHH---------------------Hh--CCCeEEEEecCCCCHHHHHHHHH
Confidence            468999999999974322110   11111111                     11  36899999999999999999999


Q ss_pred             HHHHHHHh--hhHHHHHHHHH
Q psy7275          84 LAGEDYEK--NYRVEWIRLRD  102 (150)
Q Consensus        84 e~~~ey~~--~y~pe~e~~~~  102 (150)
                      +.+.+...  .|..++++..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~  185 (188)
T 2wjg_A          165 IAVKDKKTAEIKYPNFEPYIK  185 (188)
T ss_dssp             HHHTTC---------------
T ss_pred             HHHHhccCccCCCHHHHHHHH
Confidence            98877664  56666665543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.37  E-value=8.8e-07  Score=63.45  Aligned_cols=59  Identities=8%  Similarity=0.049  Sum_probs=40.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.......+..   ..+.                     .++  +++++.+||++|.|+++++..|.
T Consensus       107 ~~~piilv~nK~Dl~~~~~~~~~~---~~~~---------------------~~~--~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A          107 DEAQLLLVGNKSDMETRVVTADQG---EALA---------------------KEL--GIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             TTCEEEEEEECTTCTTCCSCHHHH---HHHH---------------------HHH--TCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCcEEEEEECccCCcCccCHHHH---HHHH---------------------HHc--CCeEEEEECCCCCCHHHHHHHHH
Confidence            478999999999994432211111   0010                     111  46899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       161 ~~~~~  165 (170)
T 1g16_A          161 KLIQE  165 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.37  E-value=1.1e-06  Score=64.53  Aligned_cols=58  Identities=16%  Similarity=0.107  Sum_probs=41.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCC-cEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTL-KVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l-~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+....       +...+.+.                  + + +. +++.+||++|+|+++++..|
T Consensus       134 ~~~piilv~NK~Dl~~~~~~-------~~~~~~~~------------------~-~-~~~~~~~~Sa~~~~gv~~l~~~l  186 (198)
T 3t1o_A          134 DDVPIVIQVNKRDLPDALPV-------EMVRAVVD------------------P-E-GKFPVLEAVATEGKGVFETLKEV  186 (198)
T ss_dssp             TSSCEEEEEECTTSTTCCCH-------HHHHHHHC------------------T-T-CCSCEEECBGGGTBTHHHHHHHH
T ss_pred             CCCCEEEEEEchhcccccCH-------HHHHHHHH------------------h-c-CCceEEEEecCCCcCHHHHHHHH
Confidence            57899999999999754211       11111111                  1 1 34 89999999999999999999


Q ss_pred             HHHHHH
Q psy7275          83 KLAGED   88 (150)
Q Consensus        83 ~e~~~e   88 (150)
                      .+.+.+
T Consensus       187 ~~~i~~  192 (198)
T 3t1o_A          187 SRLVLA  192 (198)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877644

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.36  E-value=8.6e-07  Score=63.78  Aligned_cols=58  Identities=14%  Similarity=0.035  Sum_probs=39.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+....     ..+.....                  ...  .+.+++.+||++|.|+++++..+.+
T Consensus       109 ~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~------------------~~~--~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (169)
T 3q85_A          109 DLPVILVGNKSDLARSREV-----SLEEGRHL------------------AGT--LSCKHIETSAALHHNTRELFEGAVR  163 (169)
T ss_dssp             CCCEEEEEECTTCGGGCCS-----CHHHHHHH------------------HHH--TTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCCEEEEeeCcchhhcccC-----CHHHHHHH------------------HHH--cCCcEEEecCccCCCHHHHHHHHHH
Confidence            7899999999998643221     01100100                  001  1468999999999999999999987


Q ss_pred             HHH
Q psy7275          85 AGE   87 (150)
Q Consensus        85 ~~~   87 (150)
                      .+.
T Consensus       164 ~i~  166 (169)
T 3q85_A          164 QIR  166 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.36  E-value=1.2e-06  Score=64.60  Aligned_cols=61  Identities=8%  Similarity=0.002  Sum_probs=41.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....     .+......                   . ..+++++.+||++|.|+++++..|.
T Consensus       120 ~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~-------------------~-~~~~~~~~~Sa~~g~gv~~l~~~l~  174 (196)
T 3tkl_A          120 ENVNKLLVGNKCDLTTKKVVD-----YTTAKEFA-------------------D-SLGIPFLETSAKNATNVEQSFMTMA  174 (196)
T ss_dssp             TTCEEEEEEECTTCTTTCCSC-----HHHHHHHH-------------------H-HTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             CCCCEEEEEECcccccccccC-----HHHHHHHH-------------------H-HcCCcEEEEeCCCCCCHHHHHHHHH
Confidence            368999999999997654320     00000000                   1 1246899999999999999999998


Q ss_pred             HHHHHH
Q psy7275          84 LAGEDY   89 (150)
Q Consensus        84 e~~~ey   89 (150)
                      +.+.+.
T Consensus       175 ~~i~~~  180 (196)
T 3tkl_A          175 AEIKKR  180 (196)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.35  E-value=5.9e-07  Score=65.80  Aligned_cols=62  Identities=15%  Similarity=0.014  Sum_probs=41.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+......                  ..  .+++++.+||++|+|+++++..|.
T Consensus       114 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  168 (186)
T 2bme_A          114 QNIVIILCGNKKDLDADREV-----TFLEASRFA------------------QE--NELMFLETSALTGENVEEAFVQCA  168 (186)
T ss_dssp             TTCEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEEECccccccccc-----CHHHHHHHH------------------HH--cCCEEEEecCCCCCCHHHHHHHHH
Confidence            57899999999998543221     011011100                  01  246899999999999999999998


Q ss_pred             HHHHHHH
Q psy7275          84 LAGEDYE   90 (150)
Q Consensus        84 e~~~ey~   90 (150)
                      +.+.+..
T Consensus       169 ~~~~~~~  175 (186)
T 2bme_A          169 RKILNKI  175 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8775433

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.35  E-value=1.8e-07  Score=75.05  Aligned_cols=74  Identities=23%  Similarity=0.109  Sum_probs=48.6

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|+||+|+.......   .+.+.+..                     .+  +++++++||++|.|+++|++.|
T Consensus       108 ~~~~pvilv~NK~Dl~~~~~i~---~~~~~l~~---------------------~l--g~~vi~~SA~~g~gi~el~~~i  161 (258)
T 3a1s_A          108 EMEKKVILAMTAIDEAKKTGMK---IDRYELQK---------------------HL--GIPVVFTSSVTGEGLEELKEKI  161 (258)
T ss_dssp             TTTCCEEEEEECHHHHHHTTCC---BCHHHHHH---------------------HH--CSCEEECCTTTCTTHHHHHHHH
T ss_pred             hcCCCEEEEEECcCCCCccchH---HHHHHHHH---------------------Hc--CCCEEEEEeeCCcCHHHHHHHH
Confidence            3578999999999984322210   11111111                     11  4799999999999999999999


Q ss_pred             HHHHHHH------HhhhHHHHHHHHH
Q psy7275          83 KLAGEDY------EKNYRVEWIRLRD  102 (150)
Q Consensus        83 ~e~~~ey------~~~y~pe~e~~~~  102 (150)
                      .+....-      ...|.+++++...
T Consensus       162 ~~~~~~~~~~~~~~~~y~~~~~~~i~  187 (258)
T 3a1s_A          162 VEYAQKNTILHRMILDYGEKVESEIK  187 (258)
T ss_dssp             HHHHHSSSCSCCCCCCCCHHHHHHHH
T ss_pred             HHHhhccccCCCcccCCchhHHHHHH
Confidence            8876521      1157666665443

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.35  E-value=5.9e-07  Score=63.93  Aligned_cols=59  Identities=10%  Similarity=0.097  Sum_probs=39.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+......                  ..  .+.+++.+||++|.|++++++.|.
T Consensus       108 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  162 (168)
T 1u8z_A          108 ENVPFLLVGNKSDLEDKRQV-----SVEEAKNRA------------------DQ--WNVNYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             TTSCEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEEECccccccCcc-----CHHHHHHHH------------------HH--cCCeEEEeCCCCCCCHHHHHHHHH
Confidence            36899999999998643221     011111110                  11  146899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       163 ~~i~  166 (168)
T 1u8z_A          163 REIR  166 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.35  E-value=3.9e-07  Score=65.49  Aligned_cols=60  Identities=13%  Similarity=0.032  Sum_probs=40.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+...+..                  ..  .+.+++.+||++|.|++++++.|.
T Consensus       110 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  164 (170)
T 1z08_A          110 NEICLCIVGNKIDLEKERHV-----SIQEAESYA------------------ES--VGAKHYHTSAKQNKGIEELFLDLC  164 (170)
T ss_dssp             GGSEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             CCCeEEEEEECccccccccc-----CHHHHHHHH------------------HH--cCCeEEEecCCCCCCHHHHHHHHH
Confidence            36799999999998653221     011111100                  01  146899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       165 ~~~~~  169 (170)
T 1z08_A          165 KRMIE  169 (170)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            77644

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.34  E-value=1e-06  Score=64.53  Aligned_cols=59  Identities=10%  Similarity=0.008  Sum_probs=35.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+...+..                  ..+  +++++.+||++|.|+++++..|.
T Consensus       112 ~~~piilv~nK~Dl~~~~~v-----~~~~~~~~~------------------~~~--~~~~~~~Sa~~~~~i~~l~~~l~  166 (183)
T 2fu5_C          112 ADVEKMILGNKCDVNDKRQV-----SKERGEKLA------------------LDY--GIKFMETSAKANINVENAFFTLA  166 (183)
T ss_dssp             TTCEEEEEEEC--CCSCCCS-----CHHHHHHHH------------------HHH--TCEEEECCC---CCHHHHHHHHH
T ss_pred             CCCCEEEEEECccCCccCcC-----CHHHHHHHH------------------HHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence            46899999999999754221     001111100                  011  46899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       167 ~~i~  170 (183)
T 2fu5_C          167 RDIK  170 (183)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.34  E-value=1.4e-06  Score=67.13  Aligned_cols=67  Identities=16%  Similarity=0.053  Sum_probs=42.2

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+........      .+.+.           .   .........+++.+||++|+|++++++.|.+
T Consensus       142 ~~piilv~nK~Dl~~~~~~~~~~------~~~~~-----------~---~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  201 (228)
T 2qu8_A          142 NKSIVIGFNKIDKCNMDSLSIDN------KLLIK-----------Q---ILDNVKNPIKFSSFSTLTGVGVEQAKITACE  201 (228)
T ss_dssp             CCCEEEEEECGGGCC--CCCHHH------HHHHH-----------H---HHHHCCSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCcEEEEEeCcccCCchhhHHHH------HHHHH-----------H---HHHhcCCCceEEEEecccCCCHHHHHHHHHH
Confidence            78999999999997643321100      00000           0   0011111268999999999999999999988


Q ss_pred             HHHHHHh
Q psy7275          85 AGEDYEK   91 (150)
Q Consensus        85 ~~~ey~~   91 (150)
                      .+.+...
T Consensus       202 ~i~~~~~  208 (228)
T 2qu8_A          202 LLKNDQA  208 (228)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7755443

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.34  E-value=1.2e-06  Score=63.91  Aligned_cols=60  Identities=8%  Similarity=-0.016  Sum_probs=40.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+...+..                  ..  .+++++.+||++|.|+++++..|.
T Consensus       126 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~~v~~l~~~l~  180 (195)
T 3bc1_A          126 ENPDIVLCGNKSDLEDQRAV-----KEEEARELA------------------EK--YGIPYFETSAANGTNISHAIEMLL  180 (195)
T ss_dssp             SSCCEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH--HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCCEEEEEECccccccccc-----CHHHHHHHH------------------HH--cCCCEEEEECCCCCCHHHHHHHHH
Confidence            57899999999998643221     001111100                  01  146899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       181 ~~~~~  185 (195)
T 3bc1_A          181 DLIMK  185 (195)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.33  E-value=3.8e-07  Score=64.86  Aligned_cols=59  Identities=15%  Similarity=0.066  Sum_probs=39.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.....     .+....           +       ..++  +.+++.+||++|.|++++++.|.
T Consensus       107 ~~~piilv~nK~Dl~~~~~~~-----~~~~~~-----------~-------~~~~--~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A          107 EKVPVILVGNKVDLESEREVS-----SSEGRA-----------L-------AEEW--GCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             SCCCEEEEEECGGGGGGCCSC-----HHHHHH-----------H-------HHHH--TSCEEEECTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCcccccccCC-----HHHHHH-----------H-------HHHh--CCCEEEecCCCCcCHHHHHHHHH
Confidence            478999999999986432210     000000           0       0111  46899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       162 ~~~~  165 (167)
T 1kao_A          162 RQMN  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7664

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.33  E-value=8.1e-07  Score=65.68  Aligned_cols=61  Identities=20%  Similarity=0.189  Sum_probs=41.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+......   ..+.+.+.+.                   .....+++.+||++|.|++++++.|.
T Consensus       133 ~~~p~i~v~nK~Dl~~~~~~~~---~~~~~~~~~~-------------------~~~~~~~~~~Sa~~~~gv~~l~~~l~  190 (195)
T 1svi_A          133 YGIPVIVIATKADKIPKGKWDK---HAKVVRQTLN-------------------IDPEDELILFSSETKKGKDEAWGAIK  190 (195)
T ss_dssp             TTCCEEEEEECGGGSCGGGHHH---HHHHHHHHHT-------------------CCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred             cCCCEEEEEECcccCChHHHHH---HHHHHHHHHc-------------------ccCCCceEEEEccCCCCHHHHHHHHH
Confidence            4689999999999987543211   1111111111                   11246899999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       191 ~~l  193 (195)
T 1svi_A          191 KMI  193 (195)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.32  E-value=9.3e-07  Score=65.03  Aligned_cols=64  Identities=8%  Similarity=-0.074  Sum_probs=43.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.......+.      .....                  .+  .+.+++.+||++|.|+++++..|.
T Consensus       120 ~~~p~ilv~nK~Dl~~~~~~~~~------~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  173 (195)
T 1x3s_A          120 NDIVNMLVGNKIDKENREVDRNE------GLKFA------------------RK--HSMLFIEASAKTCDGVQCAFEELV  173 (195)
T ss_dssp             SCCEEEEEEECTTSSSCCSCHHH------HHHHH------------------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEEECCcCcccccCHHH------HHHHH------------------HH--cCCEEEEecCCCCCCHHHHHHHHH
Confidence            46899999999999543221110      00100                  01  246899999999999999999998


Q ss_pred             HHHHHHHhhh
Q psy7275          84 LAGEDYEKNY   93 (150)
Q Consensus        84 e~~~ey~~~y   93 (150)
                      +.+.+....|
T Consensus       174 ~~~~~~~~~~  183 (195)
T 1x3s_A          174 EKIIQTPGLW  183 (195)
T ss_dssp             HHHHTSGGGT
T ss_pred             HHHHhhhhhh
Confidence            8776544444

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.31  E-value=9.2e-07  Score=65.54  Aligned_cols=60  Identities=7%  Similarity=-0.027  Sum_probs=40.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.....     .+...+.                  ...+  +++++.+||++|.|++++++.|.
T Consensus       126 ~~~piilv~nK~Dl~~~~~~~-----~~~~~~~------------------~~~~--~~~~~~~Sa~~g~gi~~l~~~l~  180 (189)
T 2gf9_A          126 DNAQVILVGNKCDLEDERVVP-----AEDGRRL------------------ADDL--GFEFFEASAKENINVKQVFERLV  180 (189)
T ss_dssp             TTCEEEEEEECTTCGGGCCSC-----HHHHHHH------------------HHHH--TCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCCEEEEEECcccccccCCC-----HHHHHHH------------------HHHc--CCeEEEEECCCCCCHHHHHHHHH
Confidence            368999999999986432210     0000110                  0111  46899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       181 ~~i~~  185 (189)
T 2gf9_A          181 DVICE  185 (189)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87644

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.31  E-value=1.7e-06  Score=62.62  Aligned_cols=61  Identities=16%  Similarity=0.123  Sum_probs=41.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....    ..+...+.                   ..-....+++.+||++|.|+++++..|.
T Consensus       117 ~~~p~ilv~nK~Dl~~~~~~v----~~~~~~~~-------------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  173 (182)
T 1ky3_A          117 ETFPFVILGNKIDAEESKKIV----SEKSAQEL-------------------AKSLGDIPLFLTSAKNAINVDTAFEEIA  173 (182)
T ss_dssp             TTCCEEEEEECTTSCGGGCCS----CHHHHHHH-------------------HHHTTSCCEEEEBTTTTBSHHHHHHHHH
T ss_pred             CCCcEEEEEECCccccccccC----CHHHHHHH-------------------HHhcCCCeEEEEecCCCCCHHHHHHHHH
Confidence            578999999999986432110    00101110                   0112357899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       174 ~~~~  177 (182)
T 1ky3_A          174 RSAL  177 (182)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.31  E-value=2e-06  Score=62.93  Aligned_cols=59  Identities=8%  Similarity=0.116  Sum_probs=40.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecC-CCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSV-SGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~-TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+.....     .+.....                  ...+  +.+++.+||+ +|+|+++++..|
T Consensus       122 ~~~p~ilv~nK~Dl~~~~~v~-----~~~~~~~------------------~~~~--~~~~~~~Sa~~~~~~v~~l~~~l  176 (183)
T 3kkq_A          122 ESFPMILVANKVDLMHLRKVT-----RDQGKEM------------------ATKY--NIPYIETSAKDPPLNVDKTFHDL  176 (183)
T ss_dssp             SCCCEEEEEECTTCSTTCCSC-----HHHHHHH------------------HHHH--TCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             CCCcEEEEEECCCchhccCcC-----HHHHHHH------------------HHHh--CCeEEEeccCCCCCCHHHHHHHH
Confidence            578999999999987532210     0100110                  0111  3789999999 999999999999


Q ss_pred             HHHHH
Q psy7275          83 KLAGE   87 (150)
Q Consensus        83 ~e~~~   87 (150)
                      .+.+.
T Consensus       177 ~~~i~  181 (183)
T 3kkq_A          177 VRVIR  181 (183)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.31  E-value=1.2e-06  Score=63.32  Aligned_cols=58  Identities=14%  Similarity=0.080  Sum_probs=39.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+...+..                  .+  .+++++.+||++|.|+++++..|.
T Consensus       119 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  173 (179)
T 1z0f_A          119 PNTVIILIGNKADLEAQRDV-----TYEEAKQFA------------------EE--NGLLFLEASAKTGENVEDAFLEAA  173 (179)
T ss_dssp             TTCEEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEEECccccccccc-----CHHHHHHHH------------------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            57899999999998543221     011111111                  11  146899999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       174 ~~i  176 (179)
T 1z0f_A          174 KKI  176 (179)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.30  E-value=1.3e-06  Score=63.52  Aligned_cols=60  Identities=13%  Similarity=0.015  Sum_probs=41.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.....     .+......                  ..  .+++++.+||++|.|+++++..|.
T Consensus       115 ~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  169 (180)
T 2g6b_A          115 HDVALMLLGNKVDSAHERVVK-----REDGEKLA------------------KE--YGLPFMETSAKTGLNVDLAFTAIA  169 (180)
T ss_dssp             TTCEEEEEEECCSTTSCCCSC-----HHHHHHHH------------------HH--HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEEECcccCcccccC-----HHHHHHHH------------------HH--cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            568999999999997643210     00000000                  01  146899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       170 ~~~~~  174 (180)
T 2g6b_A          170 KELKR  174 (180)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            76643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.28  E-value=2e-06  Score=64.16  Aligned_cols=59  Identities=20%  Similarity=0.140  Sum_probs=41.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....+      ......                   ......+++.+||++|.|+++++..|.
T Consensus       116 ~~~piilv~nK~Dl~~~~~~~~------~~~~~~-------------------~~~~~~~~~~~Sa~~g~gi~~l~~~l~  170 (207)
T 1vg8_A          116 ENFPFVVLGNKIDLENRQVATK------RAQAWC-------------------YSKNNIPYFETSAKEAINVEQAFQTIA  170 (207)
T ss_dssp             GGSCEEEEEECTTSSCCCSCHH------HHHHHH-------------------HHTTSCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCcccccCHH------HHHHHH-------------------HhcCCceEEEEeCCCCCCHHHHHHHHH
Confidence            4689999999999974332111      001100                   102357899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       171 ~~~~  174 (207)
T 1vg8_A          171 RNAL  174 (207)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.28  E-value=7e-07  Score=65.29  Aligned_cols=62  Identities=11%  Similarity=0.106  Sum_probs=40.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+...+..                  ..  .+.+++.+||++|.|+++++..|.
T Consensus       110 ~~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~~v~~l~~~l~  164 (181)
T 3t5g_A          110 VQIPIMLVGNKKDLHMERVI-----SYEEGKALA------------------ES--WNAAFLESSAKENQTAVDVFRRII  164 (181)
T ss_dssp             --CCEEEEEECTTCTTTCCS-----CHHHHHHHH------------------HH--TTCEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECccchhccee-----cHHHHHHHH------------------HH--hCCcEEEEecCCCCCHHHHHHHHH
Confidence            46899999999998654321     011111110                  11  146899999999999999999998


Q ss_pred             HHHHHHH
Q psy7275          84 LAGEDYE   90 (150)
Q Consensus        84 e~~~ey~   90 (150)
                      +.+.+..
T Consensus       165 ~~~~~~~  171 (181)
T 3t5g_A          165 LEAEKMD  171 (181)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHhc
Confidence            8775443

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.28  E-value=1.7e-06  Score=64.79  Aligned_cols=58  Identities=9%  Similarity=0.035  Sum_probs=39.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.......+..   ..+.                     ..+  +++++.+||++|.|+++++..|.
T Consensus       124 ~~~piilv~nK~Dl~~~~~~~~~~---~~~~---------------------~~~--~~~~~~~Sa~~~~gi~~l~~~l~  177 (213)
T 3cph_A          124 DEAQLLLVGNKSDMETRVVTADQG---EALA---------------------KEL--GIPFIESSAKNDDNVNEIFFTLA  177 (213)
T ss_dssp             TCSEEEEEEECTTCSSCCSCHHHH---HHHH---------------------HHH--TCCEEECBTTTTBSSHHHHHHHH
T ss_pred             CCCCEEEEEECCCCcccccCHHHH---HHHH---------------------HHc--CCEEEEEeCCCCCCHHHHHHHHH
Confidence            368999999999994332211111   1110                     111  36899999999999999999988


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       178 ~~~~  181 (213)
T 3cph_A          178 KLIQ  181 (213)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.28  E-value=9.1e-07  Score=65.81  Aligned_cols=61  Identities=10%  Similarity=-0.110  Sum_probs=39.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCc-EEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLK-VVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~-vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+......   ..+...+..                   ..+ +.. ++.+||++|+|++++++.|
T Consensus       126 ~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~-------------------~~~-~~~~~~~~Sa~~~~gi~~l~~~l  182 (194)
T 3reg_A          126 DTAKTVLVGLKVDLRKDGSDDV---TKQEGDDLC-------------------QKL-GCVAYIEASSVAKIGLNEVFEKS  182 (194)
T ss_dssp             TTSEEEEEEECGGGCCTTTTCC---CHHHHHHHH-------------------HHH-TCSCEEECBTTTTBSHHHHHHHH
T ss_pred             CCCCEEEEEEChhhccCCCCcc---cHHHHHHHH-------------------Hhc-CCCEEEEeecCCCCCHHHHHHHH
Confidence            3689999999999875321100   011111100                   111 234 9999999999999999999


Q ss_pred             HHHHH
Q psy7275          83 KLAGE   87 (150)
Q Consensus        83 ~e~~~   87 (150)
                      .+.+.
T Consensus       183 ~~~i~  187 (194)
T 3reg_A          183 VDCIF  187 (194)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.28  E-value=1.6e-07  Score=68.27  Aligned_cols=67  Identities=18%  Similarity=0.195  Sum_probs=42.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.+.        +.....+.....    +       ..++....+++.+||++|.|++++++.|.
T Consensus       106 ~~~p~ilv~nK~Dl~~~~~--------~~~~~~~~~~~~----~-------~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  166 (178)
T 2lkc_A          106 ANVPIIVAINKMDKPEANP--------DRVMQELMEYNL----V-------PEEWGGDTIFCKLSAKTKEGLDHLLEMIL  166 (178)
T ss_dssp             GSCCEEEEEETTTSSCSCH--------HHHHHHHTTTTC----C-------BTTTTSSEEEEECCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECccCCcCCH--------HHHHHHHHhcCc----C-------hhHcCCcccEEEEecCCCCCHHHHHHHHH
Confidence            4789999999999976421        111122210000    0       00111125899999999999999999998


Q ss_pred             HHHHHH
Q psy7275          84 LAGEDY   89 (150)
Q Consensus        84 e~~~ey   89 (150)
                      +.+...
T Consensus       167 ~~~~~~  172 (178)
T 2lkc_A          167 LVSEME  172 (178)
T ss_dssp             HHHHHT
T ss_pred             Hhhhhh
Confidence            877654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.27  E-value=1.2e-06  Score=63.72  Aligned_cols=70  Identities=14%  Similarity=0.154  Sum_probs=41.1

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+.....+++.+      .......+  .-...    +..-+...+++.+||++|.|+++++..|.+
T Consensus       109 ~~piilv~nK~Dl~~~~~~~~~~~~------~~~~~v~~--~~~~~----~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  176 (186)
T 1mh1_A          109 NTPIILVGTKLDLRDDKDTIEKLKE------KKLTPITY--PQGLA----MAKEIGAVKYLECSALTQRGLKTVFDEAIR  176 (186)
T ss_dssp             TSCEEEEEECHHHHTCHHHHHHHHH------TTCCCCCH--HHHHH----HHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCCEEEEeEcccccccchhhhhhcc------cccccCCH--HHHHH----HHHhcCCcEEEEecCCCccCHHHHHHHHHH
Confidence            7899999999998765432222110      00000000  00000    111122248999999999999999999987


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       177 ~~  178 (186)
T 1mh1_A          177 AV  178 (186)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.27  E-value=1.9e-06  Score=62.39  Aligned_cols=59  Identities=15%  Similarity=0.044  Sum_probs=40.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.......+      ...+..                   .-....+++.+||++|.|++++++.|.
T Consensus       115 ~~~p~i~v~nK~Dl~~~~~~~~------~~~~~~-------------------~~~~~~~~~~~Sa~~~~gi~~l~~~l~  169 (177)
T 1wms_A          115 ESFPFVILGNKIDISERQVSTE------EAQAWC-------------------RDNGDYPYFETSAKDATNVAAAFEEAV  169 (177)
T ss_dssp             TTSCEEEEEECTTCSSCSSCHH------HHHHHH-------------------HHTTCCCEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEEECCcccccccCHH------HHHHHH-------------------HhcCCceEEEEeCCCCCCHHHHHHHHH
Confidence            5689999999999874322111      111110                   102357899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       170 ~~~~  173 (177)
T 1wms_A          170 RRVL  173 (177)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.27  E-value=5e-06  Score=69.11  Aligned_cols=64  Identities=16%  Similarity=0.074  Sum_probs=42.4

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc-----CCcEEEeecCCCCCHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS-----TLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~-----~l~vv~VSA~TGeGideL~   79 (150)
                      ++|.|+|+||+|+.+......++.++   .+.+.                  .+..     ..++++|||++|+|+++|+
T Consensus       194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l---~~~l~------------------~~~~~~~~~~~~vi~iSA~~g~gi~~L~  252 (341)
T 2p67_A          194 EVADLIVINKDDGDNHTNVAIARHMY---ESALH------------------ILRRKYDEWQPRVLTCSALEKRGIDEIW  252 (341)
T ss_dssp             HHCSEEEECCCCTTCHHHHHHHHHHH---HHHHH------------------HSCCSBTTBCCEEEECBGGGTBSHHHHH
T ss_pred             cccCEEEEECCCCCChHHHHHHHHHH---HHHHH------------------hccccccCCCCcEEEeeCCCCCCHHHHH
Confidence            46899999999997643222222111   11111                  1110     3478999999999999999


Q ss_pred             HHHHHHHHHH
Q psy7275          80 QLIKLAGEDY   89 (150)
Q Consensus        80 ~~I~e~~~ey   89 (150)
                      +.|.+.+..|
T Consensus       253 ~~l~~~~~~~  262 (341)
T 2p67_A          253 HAIIDFKTAL  262 (341)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987655

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.27  E-value=1.6e-06  Score=62.27  Aligned_cols=62  Identities=13%  Similarity=0.105  Sum_probs=41.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.....+       +...+...      .       +.  ....+++.+||++|.|++++++.|.
T Consensus       107 ~~~piilv~nK~Dl~~~~~~~~-------~~~~~~~~------~-------~~--~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (171)
T 1upt_A          107 RKAILVVFANKQDMEQAMTSSE-------MANSLGLP------A-------LK--DRKWQIFKTSATKGTGLDEAMEWLV  164 (171)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHH-------HHHHHTGG------G-------CT--TSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCcCCCCHHH-------HHHHhCch------h-------cc--CCceEEEECcCCCCcCHHHHHHHHH
Confidence            4789999999999976532211       11211100      0       00  1235899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       165 ~~i~  168 (171)
T 1upt_A          165 ETLK  168 (171)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7664

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.26  E-value=2e-06  Score=63.81  Aligned_cols=61  Identities=11%  Similarity=0.042  Sum_probs=31.7

Q ss_pred             CCCCEEEeeecCCCCC-chhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCC-CCCHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVN-HKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVS-GEGTEELLQL   81 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~-~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~T-GeGideL~~~   81 (150)
                      .++|+|+|+||+|+.+ ....     ..+...+..                  .++  +.+++.+||++ |.|+++++..
T Consensus       131 ~~~piilv~nK~Dl~~~~~~v-----~~~~~~~~~------------------~~~--~~~~~~~Sa~~~~~gi~~l~~~  185 (208)
T 2yc2_C          131 RPLRAVLVANKTDLPPQRHQV-----RLDMAQDWA------------------TTN--TLDFFDVSANPPGKDADAPFLS  185 (208)
T ss_dssp             SCCEEEEEEECC-------CC-----CHHHHHHHH------------------HHT--TCEEEECCC-------CHHHHH
T ss_pred             cCCcEEEEEECcccchhhccC-----CHHHHHHHH------------------HHc--CCEEEEeccCCCCcCHHHHHHH
Confidence            4789999999999975 2221     001111110                  111  36899999999 9999999999


Q ss_pred             HHHHHHHH
Q psy7275          82 IKLAGEDY   89 (150)
Q Consensus        82 I~e~~~ey   89 (150)
                      |.+.+.+.
T Consensus       186 i~~~~~~~  193 (208)
T 2yc2_C          186 IATTFYRN  193 (208)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.26  E-value=2e-06  Score=63.00  Aligned_cols=64  Identities=20%  Similarity=0.208  Sum_probs=40.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+...  +   ..+.+...+..              ....+  ..+++.+||++|.|++++++.|.
T Consensus       121 ~~~piilv~nK~Dl~~~~~--~---~~~~~~~~~~~--------------~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~  179 (190)
T 2cxx_A          121 LDIPTIVAVNKLDKIKNVQ--E---VINFLAEKFEV--------------PLSEI--DKVFIPISAKFGDNIERLKNRIF  179 (190)
T ss_dssp             TTCCEEEEEECGGGCSCHH--H---HHHHHHHHHTC--------------CGGGH--HHHEEECCTTTCTTHHHHHHHHH
T ss_pred             cCCceEEEeehHhccCcHH--H---HHHHHHHHhhh--------------hhhcc--CCcEEEEecCCCCCHHHHHHHHH
Confidence            4689999999999976541  1   11111111110              00000  13689999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       180 ~~~~~  184 (190)
T 2cxx_A          180 EVIRE  184 (190)
T ss_dssp             HHHHH
T ss_pred             Hhcch
Confidence            77644

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.26  E-value=2.3e-06  Score=64.15  Aligned_cols=59  Identities=10%  Similarity=0.103  Sum_probs=40.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....     .+......                  ..  .+++++.+||++|.|+++++..|.
T Consensus       112 ~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~------------------~~--~~~~~~~~Sa~~g~gi~~l~~~l~  166 (206)
T 2bcg_Y          112 STVLKLLVGNKCDLKDKRVVE-----YDVAKEFA------------------DA--NKMPFLETSALDSTNVEDAFLTMA  166 (206)
T ss_dssp             TTCEEEEEEECTTCTTTCCSC-----HHHHHHHH------------------HH--TTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCccccccC-----HHHHHHHH------------------HH--cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            468999999999997643210     01000000                  01  246899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       167 ~~i~  170 (206)
T 2bcg_Y          167 RQIK  170 (206)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.26  E-value=1e-06  Score=65.35  Aligned_cols=62  Identities=13%  Similarity=0.181  Sum_probs=41.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+|+|+||+|+.+....       +.+.+.+.                +..+. ...+++.+||++|.|++++++.|
T Consensus       125 ~~~piilv~nK~Dl~~~~~~-------~~~~~~~~----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  181 (190)
T 2h57_A          125 RRIPILFFANKMDLRDAVTS-------VKVSQLLC----------------LENIKDKPWHICASDAIKGEGLQEGVDWL  181 (190)
T ss_dssp             SCCCEEEEEECTTSTTCCCH-------HHHHHHHT----------------GGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             CCCeEEEEEeCcCcccCCCH-------HHHHHHhC----------------hhhccCCceEEEEccCCCCcCHHHHHHHH
Confidence            57899999999999754221       11112211                00111 24589999999999999999999


Q ss_pred             HHHHHH
Q psy7275          83 KLAGED   88 (150)
Q Consensus        83 ~e~~~e   88 (150)
                      .+.+.+
T Consensus       182 ~~~i~~  187 (190)
T 2h57_A          182 QDQIQT  187 (190)
T ss_dssp             HHHC--
T ss_pred             HHHHHH
Confidence            876643

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.26  E-value=1.9e-06  Score=62.58  Aligned_cols=58  Identities=14%  Similarity=0.023  Sum_probs=39.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....     .+...+..                  .+  .+++++.+||++|.|+++++..|.
T Consensus       116 ~~~p~i~v~nK~Dl~~~~~~~-----~~~~~~~~------------------~~--~~~~~~~~Sa~~g~gi~~l~~~l~  170 (181)
T 2efe_B          116 PNMVMALAGNKSDLLDARKVT-----AEDAQTYA------------------QE--NGLFFMETSAKTATNVKEIFYEIA  170 (181)
T ss_dssp             TTCEEEEEEECTTCTTTCCSC-----HHHHHHHH------------------HH--TTCEEEECCSSSCTTHHHHHHHHH
T ss_pred             CCCcEEEEEECCcccccccCC-----HHHHHHHH------------------HH--cCCEEEEEECCCCCCHHHHHHHHH
Confidence            368999999999996543210     01111110                  01  246899999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       171 ~~~  173 (181)
T 2efe_B          171 RRL  173 (181)
T ss_dssp             HTC
T ss_pred             HHH
Confidence            755

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.26  E-value=1.4e-06  Score=64.84  Aligned_cols=60  Identities=10%  Similarity=-0.070  Sum_probs=40.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+......                  ..  .+++++.+||++|.|++++++.|.
T Consensus       127 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  181 (191)
T 3dz8_A          127 DNAQVILVGNKCDMEEERVV-----PTEKGQLLA------------------EQ--LGFDFFEASAKENISVRQAFERLV  181 (191)
T ss_dssp             TTCEEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH--HTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCcccccc-----CHHHHHHHH------------------HH--cCCeEEEEECCCCCCHHHHHHHHH
Confidence            47899999999998543221     000000000                  01  146899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       182 ~~i~~  186 (191)
T 3dz8_A          182 DAICD  186 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87644

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.26  E-value=3.8e-06  Score=62.27  Aligned_cols=70  Identities=14%  Similarity=0.191  Sum_probs=40.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+.....+.+.+...  ..+.  ..-...+       ..+ +...+++.+||++|+|+++++..|.+
T Consensus       122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~v~--~~~~~~~-------~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~  189 (194)
T 2atx_A          122 NVPFLLIGTQIDLRDDPKTLARLNDMKE--KPIC--VEQGQKL-------AKE-IGACCYVECSALTQKGLKTVFDEAII  189 (194)
T ss_dssp             TCCEEEEEECTTSTTCHHHHHHHTTTTC--CCCC--HHHHHHH-------HHH-HTCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCCEEEEEEChhhcccccchhhcccccC--cccC--HHHHHHH-------HHH-cCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence            7899999999999765432221110000  0000  0000001       111 12238999999999999999999876


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       190 ~i  191 (194)
T 2atx_A          190 AI  191 (194)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.26  E-value=2e-06  Score=64.25  Aligned_cols=60  Identities=8%  Similarity=-0.018  Sum_probs=40.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.....     .+....           +       ...+  +++++.+||++|.|+++++..|.
T Consensus       112 ~~~piilv~nK~Dl~~~~~~~-----~~~~~~-----------~-------~~~~--~~~~~~~Sa~~~~gi~~l~~~l~  166 (203)
T 1zbd_A          112 DNAQVLLVGNKCDMEDERVVS-----SERGRQ-----------L-------ADHL--GFEFFEASAKDNINVKQTFERLV  166 (203)
T ss_dssp             SSCEEEEEEECTTCTTSCCSC-----HHHHHH-----------H-------HHHH--TCEEEECBTTTTBSSHHHHHHHH
T ss_pred             CCCCEEEEEECcccCcccccC-----HHHHHH-----------H-------HHHC--CCeEEEEECCCCCCHHHHHHHHH
Confidence            468999999999997543210     000000           0       0111  46899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       167 ~~i~~  171 (203)
T 1zbd_A          167 DVICE  171 (203)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.25  E-value=2.4e-06  Score=64.59  Aligned_cols=59  Identities=10%  Similarity=0.025  Sum_probs=40.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+...+..                  ..  .+++++.+||++|.|++++++.|.
T Consensus       140 ~~~piilV~NK~Dl~~~~~v-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~g~gi~~l~~~l~  194 (217)
T 2f7s_A          140 ENPDIVLIGNKADLPDQREV-----NERQARELA------------------DK--YGIPYFETSAATGQNVEKAVETLL  194 (217)
T ss_dssp             TCCEEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH--TTCCEEEEBTTTTBTHHHHHHHHH
T ss_pred             CCCCEEEEEECCcccccccc-----CHHHHHHHH------------------HH--CCCcEEEEECCCCCCHHHHHHHHH
Confidence            57899999999998643221     001001100                  01  146899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       195 ~~i~  198 (217)
T 2f7s_A          195 DLIM  198 (217)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.25  E-value=1.1e-06  Score=66.55  Aligned_cols=62  Identities=13%  Similarity=0.034  Sum_probs=41.2

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+......     +......                   . ..+.+++.|||++|.|+++++..|.+
T Consensus       117 ~~piilv~nK~Dl~~~~~~~~-----~~~~~~~-------------------~-~~~~~~~~~Sa~~g~gv~~l~~~l~~  171 (218)
T 4djt_A          117 EAPIVVCANKIDIKNRQKISK-----KLVMEVL-------------------K-GKNYEYFEISAKTAHNFGLPFLHLAR  171 (218)
T ss_dssp             SSCEEEEEECTTCC----CCH-----HHHHHHT-------------------T-TCCCEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             CCCEEEEEECCCCccccccCH-----HHHHHHH-------------------H-HcCCcEEEEecCCCCCHHHHHHHHHH
Confidence            589999999999875422100     0000000                   0 12468999999999999999999998


Q ss_pred             HHHHHHh
Q psy7275          85 AGEDYEK   91 (150)
Q Consensus        85 ~~~ey~~   91 (150)
                      .+.++..
T Consensus       172 ~~~~~~~  178 (218)
T 4djt_A          172 IFTGRPD  178 (218)
T ss_dssp             HHHCCTT
T ss_pred             HHhcccc
Confidence            8766543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.25  E-value=1.2e-06  Score=65.53  Aligned_cols=28  Identities=11%  Similarity=-0.016  Sum_probs=24.5

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGED   88 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~e   88 (150)
                      ..+++.+||++|.|+++++..|.+.+.+
T Consensus       153 ~~~~~e~Sa~~~~gv~~lf~~l~~~i~~  180 (184)
T 3ihw_A          153 RCTYYETCATYGLNVERVFQDVAQKVVA  180 (184)
T ss_dssp             TCEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999877644

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.24  E-value=2.1e-06  Score=63.59  Aligned_cols=59  Identities=8%  Similarity=-0.056  Sum_probs=40.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+......                  ..  .+++++.+||++|.|+++++..|.
T Consensus       129 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  183 (193)
T 2oil_A          129 ATIVVMLVGNKSDLSQAREV-----PTEEARMFA------------------EN--NGLLFLETSALDSTNVELAFETVL  183 (193)
T ss_dssp             TTCEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             CCCeEEEEEECCCccccccc-----CHHHHHHHH------------------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            47899999999998653221     000000000                  01  246899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       184 ~~i~  187 (193)
T 2oil_A          184 KEIF  187 (193)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.24  E-value=2.4e-06  Score=63.51  Aligned_cols=59  Identities=12%  Similarity=-0.058  Sum_probs=39.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+.....           .       .+  .+++++.+||++|.|+++++..|.
T Consensus       125 ~~~piilv~nK~Dl~~~~~v-----~~~~~~~~-----------~-------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  179 (191)
T 2a5j_A          125 SNMVIMLIGNKSDLESRRDV-----KREEGEAF-----------A-------RE--HGLIFMETSAKTACNVEEAFINTA  179 (191)
T ss_dssp             TTCEEEEEEECTTCGGGCCS-----CHHHHHHH-----------H-------HH--HTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             CCCCEEEEEECcccCCcccc-----CHHHHHHH-----------H-------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            37899999999998643221     00000000           0       01  146899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       180 ~~i~  183 (191)
T 2a5j_A          180 KEIY  183 (191)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.24  E-value=7.4e-07  Score=66.97  Aligned_cols=64  Identities=11%  Similarity=0.026  Sum_probs=41.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....     .+....           +       ...+  +.+++.+||++|.|+++++..|.
T Consensus       128 ~~~piilv~nK~Dl~~~~~v~-----~~~~~~-----------~-------~~~~--~~~~~~~Sa~~~~~v~~l~~~l~  182 (201)
T 3oes_A          128 TRVPVVLVGNKADLSPEREVQ-----AVEGKK-----------L-------AESW--GATFMESSARENQLTQGIFTKVI  182 (201)
T ss_dssp             -CCCEEEEEECTTCGGGCCSC-----HHHHHH-----------H-------HHHH--TCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECccCccccccC-----HHHHHH-----------H-------HHHh--CCeEEEEeCCCCCCHHHHHHHHH
Confidence            368999999999986433210     000000           0       0011  46899999999999999999998


Q ss_pred             HHHHHHHhh
Q psy7275          84 LAGEDYEKN   92 (150)
Q Consensus        84 e~~~ey~~~   92 (150)
                      +.+.+....
T Consensus       183 ~~i~~~~~~  191 (201)
T 3oes_A          183 QEIARVENS  191 (201)
T ss_dssp             HHHHHC---
T ss_pred             HHHHhhhhh
Confidence            887665443

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.24  E-value=1e-06  Score=66.73  Aligned_cols=70  Identities=17%  Similarity=0.203  Sum_probs=41.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....++..+      .....      ....-...+...+...+++.|||++|+|++++++.|.
T Consensus       133 ~~~piilv~nK~Dl~~~~~~~~~~~~------~~~~~------v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~  200 (204)
T 4gzl_A          133 PNTPIILVGTKLDLRDDKDTIEKLKE------KKLTP------ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI  200 (204)
T ss_dssp             SSCCEEEEEECHHHHTCHHHHHHHHH------TTCCC------CCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCCEEEEEechhhccchhhhhhhhc------ccccc------ccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHH
Confidence            37899999999999765543222110      00000      0000000111223345799999999999999999987


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       201 ~~  202 (204)
T 4gzl_A          201 RA  202 (204)
T ss_dssp             HT
T ss_pred             HH
Confidence            64

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.23  E-value=1e-06  Score=69.06  Aligned_cols=59  Identities=14%  Similarity=0.171  Sum_probs=39.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+|||.||+|+.+....     ..+   ++..        +..       ++  ++.++.+||+||.|++++|..|.
T Consensus       117 ~~~piilVgNK~Dl~~~r~V-----~~~---e~~~--------~a~-------~~--~~~~~e~SAktg~nV~e~F~~i~  171 (216)
T 4dkx_A          117 SDVIIMLVGNKTDLADKRQV-----SIE---EGER--------KAK-------EL--NVMFIETSAKAGYNVKQLFRRVA  171 (216)
T ss_dssp             TSSEEEEEEECTTCGGGCCS-----CHH---HHHH--------HHH-------HH--TCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             CCCeEEEEeeccchHhcCcc-----cHH---HHhh--------HHH-------Hh--CCeeEEEeCCCCcCHHHHHHHHH
Confidence            46799999999998643221     011   1110        111       11  46899999999999999999988


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       172 ~~i~  175 (216)
T 4dkx_A          172 AALP  175 (216)
T ss_dssp             HHC-
T ss_pred             HHHH
Confidence            7654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.23  E-value=1.1e-06  Score=66.33  Aligned_cols=28  Identities=7%  Similarity=-0.051  Sum_probs=24.6

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~ey   89 (150)
                      .+++.+||++|+|+++++..|.+.+.+.
T Consensus       154 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          154 AAYIECSSKTQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence            4899999999999999999998877544

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.23  E-value=2.9e-06  Score=70.65  Aligned_cols=62  Identities=15%  Similarity=0.277  Sum_probs=44.4

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+.....+       ..+.+                  .+  .+.+++.|||++|+|+++|++.|.+
T Consensus       280 ~~piilV~NK~Dl~~~~~~~~-------~~~~~------------------~~--~~~~~~~iSA~~g~gi~~l~~~i~~  332 (357)
T 2e87_A          280 DLPFLVVINKIDVADEENIKR-------LEKFV------------------KE--KGLNPIKISALKGTGIDLVKEEIIK  332 (357)
T ss_dssp             TSCEEEEECCTTTCCHHHHHH-------HHHHH------------------HH--TTCCCEECBTTTTBTHHHHHHHHHH
T ss_pred             CCCEEEEEECcccCChHHHHH-------HHHHH------------------Hh--cCCCeEEEeCCCCcCHHHHHHHHHH
Confidence            689999999999976433211       11111                  01  2468999999999999999999998


Q ss_pred             HHHHHHhhh
Q psy7275          85 AGEDYEKNY   93 (150)
Q Consensus        85 ~~~ey~~~y   93 (150)
                      .+......+
T Consensus       333 ~l~~~~~~~  341 (357)
T 2e87_A          333 TLRPLAEKV  341 (357)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhh
Confidence            886655444

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.23  E-value=3.5e-06  Score=63.38  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=41.2

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+.....+++...      ......  ..-...    +..-+...+++.+||++|.|+++++..|.+
T Consensus       129 ~~piilv~nK~Dl~~~~~~~~~~~~~------~~~~v~--~~~~~~----~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~  196 (201)
T 2gco_A          129 NVPIILVGNKKDLRQDEHTRRELAKM------KQEPVR--SEEGRD----MANRISAFGYLECSAKTKEGVREVFEMATR  196 (201)
T ss_dssp             TCCEEEEEECGGGTTCHHHHHHHHTT------TCCCCC--HHHHHH----HHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCCEEEEEecHHhhcCccchhhhccc------ccCcCC--HHHHHH----HHHhCCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence            78999999999998764432222110      000000  000000    011122237899999999999999999987


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       197 ~~  198 (201)
T 2gco_A          197 AG  198 (201)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.22  E-value=1.4e-06  Score=62.23  Aligned_cols=58  Identities=17%  Similarity=0.144  Sum_probs=38.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     +.+...+..                  .+  .+.+++.+||++|.|++++++.|.
T Consensus       110 ~~~~iilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~g~gi~~l~~~i~  164 (170)
T 1r2q_A          110 PNIVIALSGNKADLANKRAV-----DFQEAQSYA------------------DD--NSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             TTCEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEEECccCcccccc-----CHHHHHHHH------------------HH--cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            46899999999998643221     111111100                  01  246899999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       165 ~~~  167 (170)
T 1r2q_A          165 KKL  167 (170)
T ss_dssp             HTS
T ss_pred             HHH
Confidence            643

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.22  E-value=2.2e-06  Score=64.51  Aligned_cols=60  Identities=15%  Similarity=0.038  Sum_probs=40.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+......                  ..  .+++++.+||++|.|+++++..|.
T Consensus       129 ~~~piilv~nK~Dl~~~~~v-----~~~~~~~~~------------------~~--~~~~~~~~SA~~g~gi~~l~~~l~  183 (200)
T 2o52_A          129 PNIVVILCGNKKDLDPEREV-----TFLEASRFA------------------QE--NELMFLETSALTGENVEEAFLKCA  183 (200)
T ss_dssp             TTCEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEEECCCccccccc-----CHHHHHHHH------------------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            46899999999998543221     001001100                  01  246899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       184 ~~i~~  188 (200)
T 2o52_A          184 RTILN  188 (200)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.22  E-value=7.3e-07  Score=67.79  Aligned_cols=63  Identities=11%  Similarity=0.126  Sum_probs=41.2

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|.++|+||+|+.+...     .+++.+.+.+                  .++....+++++||++|+|++++++.|.+
T Consensus       154 ~~~~iiv~NK~Dl~~~~~-----~~~~~~~~~~------------------~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~  210 (221)
T 2wsm_A          154 RVADLIVINKVALAEAVG-----ADVEKMKADA------------------KLINPRAKIIEMDLKTGKGFEEWIDFLRG  210 (221)
T ss_dssp             HTCSEEEEECGGGHHHHT-----CCHHHHHHHH------------------HHHCTTSEEEECBTTTTBTHHHHHHHHHH
T ss_pred             hcCCEEEEecccCCcchh-----hHHHHHHHHH------------------HHhCCCCeEEEeecCCCCCHHHHHHHHHH
Confidence            469999999999853210     0122222221                  12233578999999999999999999988


Q ss_pred             HHHHHH
Q psy7275          85 AGEDYE   90 (150)
Q Consensus        85 ~~~ey~   90 (150)
                      .+..|.
T Consensus       211 ~~~~~~  216 (221)
T 2wsm_A          211 ILNVHS  216 (221)
T ss_dssp             HHC---
T ss_pred             HHHHHH
Confidence            765543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.22  E-value=7.9e-08  Score=77.20  Aligned_cols=57  Identities=19%  Similarity=0.191  Sum_probs=40.2

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|+||+|+......   ..+.+.+.+.                      . +.+++++||++|.|+++|++.|
T Consensus       108 ~~~~pvilv~NK~Dl~~~~~~---~~~~~~l~~~----------------------l-g~~vi~~SA~~g~gi~el~~~i  161 (256)
T 3iby_A          108 ELGKPVVVALNMMDIAEHRGI---SIDTEKLESL----------------------L-GCSVIPIQAHKNIGIPALQQSL  161 (256)
T ss_dssp             TSCSCEEEEEECHHHHHHTTC---EECHHHHHHH----------------------H-CSCEEECBGGGTBSHHHHHHHH
T ss_pred             HcCCCEEEEEEChhcCCcCCc---HHHHHHHHHH----------------------c-CCCEEEEECCCCCCHHHHHHHH
Confidence            457899999999998533211   1122211111                      1 4799999999999999999999


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       162 ~~~  164 (256)
T 3iby_A          162 LHC  164 (256)
T ss_dssp             HTC
T ss_pred             Hhh
Confidence            876

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.21  E-value=1.9e-06  Score=75.25  Aligned_cols=64  Identities=16%  Similarity=0.138  Sum_probs=42.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHH-hhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDE-FYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~e-fy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+.+...+..++.   .+.+.                 .. .+...+++++||++|+|+++|++.|
T Consensus       124 ~~ip~IvviNK~Dl~~~~~~~~~~~~l---~~~l~-----------------~~~~~~~~~ii~vSA~~g~gI~~L~~~L  183 (482)
T 1wb1_A          124 FNIPIIVVITKSDNAGTEEIKRTEMIM---KSILQ-----------------STHNLKNSSIIPISAKTGFGVDELKNLI  183 (482)
T ss_dssp             TTCCBCEEEECTTSSCHHHHHHHHHHH---HHHHH-----------------HSSSGGGCCEEECCTTTCTTHHHHHHHH
T ss_pred             cCCCEEEEEECCCcccchhHHHHHHHH---HHHHh-----------------hhcccccceEEEEECcCCCCHHHHHHHH
Confidence            578999999999998643221111111   11110                 01 1335799999999999999999988


Q ss_pred             HHHHH
Q psy7275          83 KLAGE   87 (150)
Q Consensus        83 ~e~~~   87 (150)
                      .+.+.
T Consensus       184 ~~~i~  188 (482)
T 1wb1_A          184 ITTLN  188 (482)
T ss_dssp             HHHHH
T ss_pred             HHhhc
Confidence            87654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.21  E-value=4.3e-06  Score=61.07  Aligned_cols=27  Identities=11%  Similarity=0.153  Sum_probs=24.1

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      +++++.+||++|.|+++++..|.+.+.
T Consensus       177 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          177 NLLFIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             TCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence            469999999999999999999987664

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.21  E-value=2.3e-06  Score=65.21  Aligned_cols=73  Identities=8%  Similarity=0.022  Sum_probs=42.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....+.+.+..  ...+.  ..-...+        ..-+...+++.+||++|.|+++++..|.
T Consensus       137 ~~~piilv~nK~Dl~~~~~~~~~~~~~~--~~~v~--~~~~~~~--------~~~~~~~~~~~~SA~~g~gi~el~~~l~  204 (214)
T 2j1l_A          137 KKVPIIVVGCKTDLRKDKSLVNKLRRNG--LEPVT--YHRGQEM--------ARSVGAVAYLECSARLHDNVHAVFQEAA  204 (214)
T ss_dssp             SSCCEEEEEECGGGGSCHHHHHHHHHTT--CCCCC--HHHHHHH--------HHHTTCSEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCCEEEEEEChhhhccchhhhhhcccc--cCccc--HHHHHHH--------HHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence            3689999999999976544322210000  00000  0000001        1112223899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       205 ~~~~~  209 (214)
T 2j1l_A          205 EVALS  209 (214)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.20  E-value=1.7e-06  Score=62.93  Aligned_cols=25  Identities=16%  Similarity=0.018  Sum_probs=22.3

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+++.+||++|+|++++++.|.+.+
T Consensus       155 ~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          155 PAYIECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4899999999999999999987654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.20  E-value=4.4e-06  Score=62.24  Aligned_cols=28  Identities=18%  Similarity=0.328  Sum_probs=24.2

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~ey   89 (150)
                      .+++.+||++|.|+++++..|.+.+.+.
T Consensus       169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          169 ASYIECSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            4899999999999999999998776443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.19  E-value=1.6e-06  Score=62.01  Aligned_cols=57  Identities=12%  Similarity=0.127  Sum_probs=38.9

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+....     ..+...+..                  ..+  +.+++.+||++|.|+++++..|.+
T Consensus       109 ~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~~--~~~~~~~Sa~~~~~i~~l~~~l~~  163 (168)
T 1z2a_A          109 DIPTALVQNKIDLLDDSCI-----KNEEAEGLA------------------KRL--KLRFYRTSVKEDLNVSEVFKYLAE  163 (168)
T ss_dssp             SCCEEEEEECGGGGGGCSS-----CHHHHHHHH------------------HHH--TCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             CCCEEEEEECcccCccccc-----CHHHHHHHH------------------HHc--CCeEEEEecCCCCCHHHHHHHHHH
Confidence            6899999999998653221     000001100                  111  468999999999999999999987


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       164 ~~  165 (168)
T 1z2a_A          164 KH  165 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.19  E-value=1.3e-06  Score=66.59  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=40.9

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|.++|+||+|+.+...     .+++.+.+.+                  .++....+++.+||++|+|+++++..|.+
T Consensus       164 ~~~~iiv~NK~Dl~~~~~-----~~~~~~~~~~------------------~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  220 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVG-----ADIKKMENDA------------------KRINPDAEVVLLSLKTMEGFDKVLEFIEK  220 (226)
T ss_dssp             TTCSEEEEECGGGHHHHT-----CCHHHHHHHH------------------HHHCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhH-----HHHHHHHHHH------------------HHhCCCCeEEEEEecCCCCHHHHHHHHHH
Confidence            356799999999853211     0111112211                  12333568999999999999999999987


Q ss_pred             HHHHH
Q psy7275          85 AGEDY   89 (150)
Q Consensus        85 ~~~ey   89 (150)
                      .+.+|
T Consensus       221 ~~~~~  225 (226)
T 2hf9_A          221 SVKEV  225 (226)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            76543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.19  E-value=3.5e-06  Score=72.42  Aligned_cols=70  Identities=17%  Similarity=0.192  Sum_probs=48.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+.+.+.+..               .-.+....+++.|||++|.|+++++..|.
T Consensus       305 ~~~~~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~---------------~~~~~~~~~~~~~SA~~g~gv~~l~~~i~  364 (456)
T 4dcu_A          305 AGKAVVIVVNKWDAVDKDES-----TMKEFEENIRD---------------HFQFLDYAPILFMSALTKKRIHTLMPAII  364 (456)
T ss_dssp             TTCEEEEEEECGGGSCCCSS-----HHHHHHHHHHH---------------HCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred             cCCCEEEEEEChhcCCCchH-----HHHHHHHHHHH---------------hcccCCCCCEEEEcCCCCcCHHHHHHHHH
Confidence            46899999999999764321     11112222211               00223457999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy7275          84 LAGEDYEKNY   93 (150)
Q Consensus        84 e~~~ey~~~y   93 (150)
                      +...++....
T Consensus       365 ~~~~~~~~~~  374 (456)
T 4dcu_A          365 KASENHSLRV  374 (456)
T ss_dssp             HHHHHHTCCC
T ss_pred             HHHHHhcccC
Confidence            9887776544

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.18  E-value=7.3e-07  Score=65.97  Aligned_cols=67  Identities=9%  Similarity=-0.008  Sum_probs=42.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+|+|+||+|+.+.....       ...+.+...                .+ ..+.+++.+||++|.|++++++.|
T Consensus       116 ~~~piilv~NK~Dl~~~~~~~-------~i~~~~~~~----------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l  172 (187)
T 1zj6_A          116 RKAGLLIFANKQDVKECMTVA-------EISQFLKLT----------------SIKDHQWHIQACCALTGEGLCQGLEWM  172 (187)
T ss_dssp             TTCEEEEEEECTTSTTCCCHH-------HHHHHHTGG----------------GCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             CCCeEEEEEECCCCcCCCCHH-------HHHHHhChh----------------hhcCCCcEEEEccCCCCcCHHHHHHHH
Confidence            478999999999997542211       111221100                00 123589999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy7275          83 KLAGEDYEKNY   93 (150)
Q Consensus        83 ~e~~~ey~~~y   93 (150)
                      .+.+......+
T Consensus       173 ~~~~~~~~~~~  183 (187)
T 1zj6_A          173 MSRLKIRLEHH  183 (187)
T ss_dssp             HHHHCC-----
T ss_pred             HHHHHHHhhhh
Confidence            88775544433

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.18  E-value=1.1e-06  Score=74.37  Aligned_cols=61  Identities=10%  Similarity=0.125  Sum_probs=41.5

Q ss_pred             CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275           6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      .|+|+|+||+|+.+.+...++.++.   .+.+..                 .+....+++++||++|.|+++|++.|.+.
T Consensus       130 ~~iivviNK~Dl~~~~~~~~~~~~i---~~~l~~-----------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~  189 (403)
T 3sjy_A          130 KNLIIVQNKVDVVSKEEALSQYRQI---KQFTKG-----------------TWAENVPIIPVSALHKINIDSLIEGIEEY  189 (403)
T ss_dssp             CCEEEEEECGGGSCHHHHHHHHHHH---HHHHTT-----------------STTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCEEEEEECccccchHHHHHHHHHH---HHHHHh-----------------hCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence            3899999999998765433332211   111110                 11235799999999999999999998765


Q ss_pred             H
Q psy7275          86 G   86 (150)
Q Consensus        86 ~   86 (150)
                      +
T Consensus       190 l  190 (403)
T 3sjy_A          190 I  190 (403)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.18  E-value=3.1e-06  Score=63.94  Aligned_cols=60  Identities=10%  Similarity=0.024  Sum_probs=40.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCC-cEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTL-KVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l-~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+....     ..+...+..                  .. + ++ +++.+||++|+|+++++..|
T Consensus       133 ~~~piilv~NK~Dl~~~~~v-----~~~~~~~~~------------------~~-~-~~~~~~~~SA~~g~gi~~l~~~l  187 (201)
T 2hup_A          133 SNIVQLLIGNKSDLSELREV-----SLAEAQSLA------------------EH-Y-DILCAIETSAKDSSNVEEAFLRV  187 (201)
T ss_dssp             TTCEEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH-T-TCSEEEECBTTTTBSHHHHHHHH
T ss_pred             CCCCEEEEEECCcccccccc-----CHHHHHHHH------------------HH-c-CCCEEEEEeCCCCCCHHHHHHHH
Confidence            46899999999998643211     011111110                  01 1 35 88999999999999999999


Q ss_pred             HHHHHH
Q psy7275          83 KLAGED   88 (150)
Q Consensus        83 ~e~~~e   88 (150)
                      .+.+.+
T Consensus       188 ~~~i~~  193 (201)
T 2hup_A          188 ATELIM  193 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.17  E-value=1.9e-06  Score=64.40  Aligned_cols=60  Identities=5%  Similarity=-0.072  Sum_probs=40.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+....     ..+...+ +                  ...+...+++.+||++|.|+++++..|.
T Consensus       130 ~~~piilV~NK~Dl~~~~~v-----~~~~~~~-~------------------~~~~~~~~~~~~SA~~g~gi~~l~~~l~  185 (192)
T 2il1_A          130 EDAELLLVGNKLDCETDREI-----TRQQGEK-F------------------AQQITGMRFCEASAKDNFNVDEIFLKLV  185 (192)
T ss_dssp             TTCEEEEEEECGGGGGGCCS-----CHHHHHH-H------------------HHTSTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCcEEEEEECccccccccc-----CHHHHHH-H------------------HHhcCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            46899999999998643221     0000000 0                  0112357899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       186 ~~i~  189 (192)
T 2il1_A          186 DDIL  189 (192)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.17  E-value=4.2e-06  Score=63.18  Aligned_cols=70  Identities=11%  Similarity=0.132  Sum_probs=41.4

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+.....+++.+       +.... ........    +..-+...+++.+||++|.|++++++.|.+
T Consensus       129 ~~piilv~nK~Dl~~~~~~~~~~~~-------~~~~~-v~~~~~~~----~~~~~~~~~~~~~SA~~g~gi~el~~~l~~  196 (207)
T 2fv8_A          129 NVPIILVANKKDLRSDEHVRTELAR-------MKQEP-VRTDDGRA----MAVRIQAYDYLECSAKTKEGVREVFETATR  196 (207)
T ss_dssp             TCCEEEEEECGGGGGCHHHHHHHHH-------TTCCC-CCHHHHHH----HHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCCEEEEEEchhhhccccchhhhhh-------cccCC-CCHHHHHH----HHHhcCCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            7899999999999765443222211       00000 00000000    011122238899999999999999999987


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       197 ~i  198 (207)
T 2fv8_A          197 AA  198 (207)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.16  E-value=3.8e-06  Score=61.24  Aligned_cols=61  Identities=18%  Similarity=0.093  Sum_probs=40.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+|+|+||+|+.+.....       .+.+.+...                .. ....+++.+||++|+|++++++.|
T Consensus       118 ~~~piilv~nK~Dl~~~~~~~-------~i~~~~~~~----------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l  174 (183)
T 1moz_A          118 QDAALLVFANKQDQPGALSAS-------EVSKELNLV----------------ELKDRSWSIVASSAIKGEGITEGLDWL  174 (183)
T ss_dssp             SSCEEEEEEECTTSTTCCCHH-------HHHHHTTTT----------------TCCSSCEEEEEEBGGGTBTHHHHHHHH
T ss_pred             CCCeEEEEEECCCCCCCCCHH-------HHHHHhCcc----------------cccCCceEEEEccCCCCcCHHHHHHHH
Confidence            578999999999997642211       111111100                00 123478999999999999999999


Q ss_pred             HHHHH
Q psy7275          83 KLAGE   87 (150)
Q Consensus        83 ~e~~~   87 (150)
                      .+.+.
T Consensus       175 ~~~~~  179 (183)
T 1moz_A          175 IDVIK  179 (183)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.16  E-value=2.2e-06  Score=61.31  Aligned_cols=58  Identities=16%  Similarity=0.016  Sum_probs=38.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+......     +.. ..          +       ...  .+.+++.+||++|.|++++++.|.
T Consensus       108 ~~~pii~v~nK~Dl~~~~~v~~-----~~~-~~----------~-------~~~--~~~~~~~~Sa~~~~gi~~l~~~l~  162 (172)
T 2erx_A          108 ESIPIMLVGNKCDESPSREVQS-----SEA-EA----------L-------ART--WKCAFMETSAKLNHNVKELFQELL  162 (172)
T ss_dssp             -CCCEEEEEECGGGGGGCCSCH-----HHH-HH----------H-------HHH--HTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCCEEEEEEccccccccccCH-----HHH-HH----------H-------HHH--hCCeEEEecCCCCcCHHHHHHHHH
Confidence            3689999999999865432100     000 00          0       001  146899999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       163 ~~~  165 (172)
T 2erx_A          163 NLE  165 (172)
T ss_dssp             HTC
T ss_pred             HHH
Confidence            654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.15  E-value=2.7e-06  Score=60.85  Aligned_cols=57  Identities=12%  Similarity=-0.039  Sum_probs=38.9

Q ss_pred             CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..+|+++|+||+|+.+.... .+..      ..           +       ...  .+.+++.+||++|.|+++++..|
T Consensus       110 ~~~~iilv~nK~Dl~~~~~v~~~~~------~~-----------~-------~~~--~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A          110 PSIVVAIAGNKCDLTDVREVMERDA------KD-----------Y-------ADS--IHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             TTSEEEEEEECTTCGGGCCSCHHHH------HH-----------H-------HHH--TTCEEEECBTTTTBSHHHHHHHH
T ss_pred             CCCcEEEEEECCccccccccCHHHH------HH-----------H-------HHH--cCCEEEEEeCCCCcCHHHHHHHH
Confidence            46799999999999653221 1100      00           0       001  14689999999999999999998


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       164 ~~~i  167 (170)
T 1z0j_A          164 SRRI  167 (170)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.15  E-value=5.5e-06  Score=62.50  Aligned_cols=59  Identities=15%  Similarity=0.077  Sum_probs=40.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+|+|.||+|+.+....     ..+...+           +.+       . + +.+++.+||++|.|+++++..|.
T Consensus       129 ~~~piilv~nK~Dl~~~~~v-----~~~~~~~-----------~a~-------~-~-~~~~~e~Sa~~~~~v~~lf~~l~  183 (195)
T 3cbq_A          129 HDLPVILVGNKSDLARSREV-----SLEEGRH-----------LAG-------T-L-SCKHIETSAALHHNTRELFEGAV  183 (195)
T ss_dssp             SCCCEEEEEECTTCTTTCCS-----CHHHHHH-----------HHH-------H-T-TCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             CCCCEEEEeechhccccCCc-----CHHHHHH-----------HHH-------H-h-CCEEEEEcCCCCCCHHHHHHHHH
Confidence            37899999999999753221     0111111           000       1 1 36899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       184 ~~i~  187 (195)
T 3cbq_A          184 RQIR  187 (195)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.15  E-value=2.5e-06  Score=64.32  Aligned_cols=25  Identities=12%  Similarity=0.234  Sum_probs=20.4

Q ss_pred             CCcEEEeecCCC------CCHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSG------EGTEELLQLIKLA   85 (150)
Q Consensus        61 ~l~vv~VSA~TG------eGideL~~~I~e~   85 (150)
                      ..+++.+||++|      .|++++++.|.+.
T Consensus       183 ~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          183 KVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             CEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence            567999999999      9999999998764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.15  E-value=6.1e-07  Score=71.64  Aligned_cols=73  Identities=23%  Similarity=0.260  Sum_probs=48.8

Q ss_pred             CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275           6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      +|+|+|+||+|+.+....   -.+...+.+                     . . +++++++||++|.|+++++..|.+.
T Consensus       110 ~p~ilv~NK~Dl~~~~~~---~~~~~~l~~---------------------~-l-g~~~~~~Sa~~g~gi~~l~~~i~~~  163 (271)
T 3k53_A          110 KNIILVLNKFDLLKKKGA---KIDIKKMRK---------------------E-L-GVPVIPTNAKKGEGVEELKRMIALM  163 (271)
T ss_dssp             CSEEEEEECHHHHHHHTC---CCCHHHHHH---------------------H-H-SSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred             CCEEEEEEChhcCccccc---HHHHHHHHH---------------------H-c-CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            899999999997532211   001111111                     1 1 4799999999999999999999988


Q ss_pred             HHHH------HhhhHHHHHHHHHHH
Q psy7275          86 GEDY------EKNYRVEWIRLRDEK  104 (150)
Q Consensus        86 ~~ey------~~~y~pe~e~~~~~~  104 (150)
                      +...      ...|.+++++...+-
T Consensus       164 ~~~~~~~~~~~~~~~~~~e~~~~~l  188 (271)
T 3k53_A          164 AEGKVTTNPIIPRYDEDIEREIKHI  188 (271)
T ss_dssp             HHTCCCCCCCCCCCCHHHHHHHHHH
T ss_pred             HhccccCCCCCcCCCHHHHHHHHHH
Confidence            7643      235666666665544

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.15  E-value=3.5e-06  Score=61.89  Aligned_cols=62  Identities=21%  Similarity=0.189  Sum_probs=41.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+|+|+||+|+.+....       +.+.+.+..                ... ....+++.+||++|.|++++++.|
T Consensus       118 ~~~piilv~nK~Dl~~~~~~-------~~~~~~~~~----------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  174 (186)
T 1ksh_A          118 AGATLLIFANKQDLPGALSC-------NAIQEALEL----------------DSIRSHHWRIQGCSAVTGEDLLPGIDWL  174 (186)
T ss_dssp             TTCEEEEEEECTTSTTCCCH-------HHHHHHTTG----------------GGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred             CCCcEEEEEeCccCCCCCCH-------HHHHHHhCh----------------hhccCCceEEEEeeCCCCCCHHHHHHHH
Confidence            46899999999999764321       111121110                000 124589999999999999999999


Q ss_pred             HHHHHH
Q psy7275          83 KLAGED   88 (150)
Q Consensus        83 ~e~~~e   88 (150)
                      .+.+.+
T Consensus       175 ~~~i~~  180 (186)
T 1ksh_A          175 LDDISS  180 (186)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            887743

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.14  E-value=2.3e-06  Score=61.74  Aligned_cols=58  Identities=12%  Similarity=0.078  Sum_probs=39.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+......                  ..  .+.+++.+||++|.|++++++.|.
T Consensus       118 ~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~~i~~l~~~l~  172 (179)
T 2y8e_A          118 SDVIIMLVGNKTDLSDKRQV-----STEEGERKA------------------KE--LNVMFIETSAKAGYNVKQLFRRVA  172 (179)
T ss_dssp             TSSEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--HTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             CCCcEEEEEECCcccccCcC-----CHHHHHHHH------------------HH--cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            46899999999998643221     000000100                  01  146899999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       173 ~~~  175 (179)
T 2y8e_A          173 AAL  175 (179)
T ss_dssp             HTC
T ss_pred             HHH
Confidence            654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.13  E-value=1.7e-06  Score=64.32  Aligned_cols=61  Identities=15%  Similarity=0.089  Sum_probs=40.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....+       +.+.+...      .       .  .....+++.|||++|.|++++++.|.
T Consensus       123 ~~~piilv~NK~Dl~~~~~~~~-------~~~~~~~~------~-------~--~~~~~~~~~~SA~~g~gv~~l~~~l~  180 (188)
T 1zd9_A          123 QGIPVLVLGNKRDLPGALDEKE-------LIEKMNLS------A-------I--QDREICCYSISCKEKDNIDITLQWLI  180 (188)
T ss_dssp             TTCCEEEEEECTTSTTCCCHHH-------HHHHTTGG------G-------C--CSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCccCCCHHH-------HHHHhChh------h-------h--ccCCeeEEEEECCCCCCHHHHHHHHH
Confidence            5789999999999976432111       11111100      0       0  01235789999999999999999998


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       181 ~~~  183 (188)
T 1zd9_A          181 QHS  183 (188)
T ss_dssp             HTC
T ss_pred             HHH
Confidence            755

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.13  E-value=3.8e-06  Score=62.03  Aligned_cols=61  Identities=18%  Similarity=0.101  Sum_probs=41.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~   81 (150)
                      .+.|+|+|+||+|+.+.....+       +.+.+..                 ++.  .+.+++.+||++|.|++++++.
T Consensus       122 ~~~piilv~nK~Dl~~~~~~~~-------~~~~~~~-----------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~  177 (189)
T 2x77_A          122 RKSLLLIFANKQDLPDAASEAE-------IAEQLGV-----------------SSIMNRTWTIVKSSSKTGDGLVEGMDW  177 (189)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHH-------HHHHTTG-----------------GGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred             CCCeEEEEEECCCCcCCCCHHH-------HHHHhCh-----------------hhccCCceEEEEccCCCccCHHHHHHH
Confidence            4789999999999976532111       1111110                 011  1347999999999999999999


Q ss_pred             HHHHHHH
Q psy7275          82 IKLAGED   88 (150)
Q Consensus        82 I~e~~~e   88 (150)
                      |.+.+.+
T Consensus       178 l~~~i~~  184 (189)
T 2x77_A          178 LVERLRE  184 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9877643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.13  E-value=4e-06  Score=62.51  Aligned_cols=60  Identities=15%  Similarity=0.126  Sum_probs=40.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCC-CHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGE-GTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGe-GideL~~~I   82 (150)
                      .++|+|+|+||+|+.+....     ..+   +...        +.       .++  +.+++.+||++|. |++++++.|
T Consensus       131 ~~~piilv~NK~Dl~~~~~v-----~~~---~~~~--------~~-------~~~--~~~~~~~Sa~~g~~gi~~l~~~l  185 (196)
T 2atv_A          131 KNVTLILVGNKADLDHSRQV-----STE---EGEK--------LA-------TEL--ACAFYECSACTGEGNITEIFYEL  185 (196)
T ss_dssp             SCCCEEEEEECGGGGGGCCS-----CHH---HHHH--------HH-------HHH--TSEEEECCTTTCTTCHHHHHHHH
T ss_pred             CCCcEEEEEECccccccccc-----CHH---HHHH--------HH-------HHh--CCeEEEECCCcCCcCHHHHHHHH
Confidence            47899999999998653211     000   1100        00       111  4689999999999 999999999


Q ss_pred             HHHHHH
Q psy7275          83 KLAGED   88 (150)
Q Consensus        83 ~e~~~e   88 (150)
                      .+.+.+
T Consensus       186 ~~~i~~  191 (196)
T 2atv_A          186 CREVRR  191 (196)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            876643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.12  E-value=2.4e-06  Score=63.43  Aligned_cols=62  Identities=15%  Similarity=0.170  Sum_probs=40.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.....       .+.+.+...      .       .  .....+++.+||++|+|++++++.|.
T Consensus       116 ~~~piilv~NK~Dl~~~~~~~-------~~~~~~~~~------~-------~--~~~~~~~~~~Sa~~g~gi~~l~~~l~  173 (181)
T 1fzq_A          116 SCVPVLIFANKQDLLTAAPAS-------EIAEGLNLH------T-------I--RDRVWQIQSCSALTGEGVQDGMNWVC  173 (181)
T ss_dssp             TTCCEEEEEECTTSTTCCCHH-------HHHHHTTGG------G-------C--CSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             cCCCEEEEEECcCcccCCCHH-------HHHHHhCch------h-------c--cCCceEEEEccCCCCCCHHHHHHHHH
Confidence            468999999999997643211       111111100      0       0  01235789999999999999999997


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       174 ~~~~  177 (181)
T 1fzq_A          174 KNVN  177 (181)
T ss_dssp             HTC-
T ss_pred             HHHH
Confidence            7553

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.12  E-value=3.9e-06  Score=60.75  Aligned_cols=27  Identities=11%  Similarity=-0.068  Sum_probs=23.8

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      +++++.+||++|.|+++++..|.+.+.
T Consensus       146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~  172 (178)
T 2hxs_A          146 GFSSHFVSAKTGDSVFLCFQKVAAEIL  172 (178)
T ss_dssp             TCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999987653

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.11  E-value=7.3e-07  Score=72.39  Aligned_cols=72  Identities=15%  Similarity=0.140  Sum_probs=45.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+......   ..+.+.+...                      . +.+++++||++|.|+++++..|.
T Consensus       106 ~~~p~ilv~NK~Dl~~~~~~---~~~~~~l~~~----------------------l-g~~vi~~SA~~g~gi~el~~~i~  159 (272)
T 3b1v_A          106 TGIPVTIALNMIDVLDGQGK---KINVDKLSYH----------------------L-GVPVVATSALKQTGVDQVVKKAA  159 (272)
T ss_dssp             TCSCEEEEEECHHHHHHTTC---CCCHHHHHHH----------------------H-TSCEEECBTTTTBSHHHHHHHHH
T ss_pred             cCCCEEEEEEChhhCCcCCc---HHHHHHHHHH----------------------c-CCCEEEEEccCCCCHHHHHHHHH
Confidence            47899999999997432111   0111111111                      1 46899999999999999999998


Q ss_pred             HHHHHH-----HhhhHHHHHHHH
Q psy7275          84 LAGEDY-----EKNYRVEWIRLR  101 (150)
Q Consensus        84 e~~~ey-----~~~y~pe~e~~~  101 (150)
                      +.+..-     ...|.+++|...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~e~~i  182 (272)
T 3b1v_A          160 HTTTSTVGDLAFPIYDDRLEAAI  182 (272)
T ss_dssp             HSCTTTCCSCCCCCCCHHHHHHH
T ss_pred             HHHhhccCCCccCCCCHHHHHHH
Confidence            765321     124655555444

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.11  E-value=4.7e-06  Score=64.85  Aligned_cols=57  Identities=18%  Similarity=0.113  Sum_probs=38.5

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|.||+|+.+....     ..+   +...        +       ...+  +.+++.+||++|+|++++|..|.+
T Consensus       145 ~~piilVgNK~DL~~~r~v-----~~~---e~~~--------~-------a~~~--~~~~~e~SAk~g~~v~elf~~l~~  199 (211)
T 2g3y_A          145 DIPIILVGNKSDLVRCREV-----SVS---EGRA--------C-------AVVF--DCKFIETSAAVQHNVKELFEGIVR  199 (211)
T ss_dssp             TSCEEEEEECTTCGGGCCS-----CHH---HHHH--------H-------HHHH--TCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCcEEEEEEChHHhcCceE-----eHH---HHHH--------H-------HHHc--CCEEEEEeCCCCCCHHHHHHHHHH
Confidence            6899999999998642211     000   0000        0       0111  468999999999999999999987


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       200 ~i  201 (211)
T 2g3y_A          200 QV  201 (211)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.11  E-value=2.7e-06  Score=60.83  Aligned_cols=59  Identities=17%  Similarity=0.086  Sum_probs=39.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~   81 (150)
                      .+.|+|+|+||+|+.+.....+       +.+.+..                 .+.  ...+++.+||++|.|++++++.
T Consensus       100 ~~~piilv~nK~Dl~~~~~~~~-------~~~~~~~-----------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (164)
T 1r8s_A          100 RDAVLLVFANKQDLPNAMNAAE-------ITDKLGL-----------------HSLRHRNWYIQATCATSGDGLYEGLDW  155 (164)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHH-------HHHHTTG-----------------GGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             cCCeEEEEEECcCCcCCCCHHH-------HHHHhCc-----------------ccccCccEEEEEcccCCCcCHHHHHHH
Confidence            3689999999999976432111       1111110                 011  1347899999999999999999


Q ss_pred             HHHHH
Q psy7275          82 IKLAG   86 (150)
Q Consensus        82 I~e~~   86 (150)
                      |.+.+
T Consensus       156 l~~~i  160 (164)
T 1r8s_A          156 LSNQL  160 (164)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            97754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.10  E-value=2.2e-07  Score=74.99  Aligned_cols=72  Identities=17%  Similarity=0.199  Sum_probs=46.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....   ..+.+.+.+.                      + +.+++++||++|.|+++|++.|.
T Consensus       111 ~~~p~ivv~NK~Dl~~~~~~---~~~~~~l~~~----------------------l-g~~~i~~SA~~g~gi~el~~~i~  164 (274)
T 3i8s_A          111 LGIPCIVALNMLDIAEKQNI---RIEIDALSAR----------------------L-GCPVIPLVSTRGRGIEALKLAID  164 (274)
T ss_dssp             HTCCEEEEEECHHHHHHTTE---EECHHHHHHH----------------------H-TSCEEECCCGGGHHHHHHHHHHH
T ss_pred             cCCCEEEEEECccchhhhhH---HHHHHHHHHh----------------------c-CCCEEEEEcCCCCCHHHHHHHHH
Confidence            47899999999998532211   1122211111                      1 46999999999999999999998


Q ss_pred             HHHHH---HHhhhHHHHHHHH
Q psy7275          84 LAGED---YEKNYRVEWIRLR  101 (150)
Q Consensus        84 e~~~e---y~~~y~pe~e~~~  101 (150)
                      +.+..   ....|.+++++..
T Consensus       165 ~~~~~~~~~~~~~~~~l~~~~  185 (274)
T 3i8s_A          165 RYKANENVELVHYAQPLLNEA  185 (274)
T ss_dssp             TCCCCCCCCCCCCCHHHHHHH
T ss_pred             HHHhcCCCcccCCCHHHHHHH
Confidence            76531   1234555554443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.10  E-value=2.4e-06  Score=70.09  Aligned_cols=54  Identities=20%  Similarity=0.351  Sum_probs=37.7

Q ss_pred             CCCCEEEeeecCCCCCchh---hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKY---AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~---~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~   80 (150)
                      .++|+|+|+||+|+.+...   ..+|.       +..                  .+  .+.+++.+||++|+|+++|+.
T Consensus       109 ~~~~~ilV~NK~DL~~~~~v~~~~~~~-------~~~------------------~~--~g~~~~~~SA~~g~gi~~L~~  161 (302)
T 2yv5_A          109 FKVEPVIVFNKIDLLNEEEKKELERWI-------SIY------------------RD--AGYDVLKVSAKTGEGIDELVD  161 (302)
T ss_dssp             TTCEEEEEECCGGGCCHHHHHHHHHHH-------HHH------------------HH--TTCEEEECCTTTCTTHHHHHH
T ss_pred             CCCCEEEEEEcccCCCccccHHHHHHH-------HHH------------------HH--CCCeEEEEECCCCCCHHHHHh
Confidence            5789999999999976532   11221       100                  01  145899999999999999998


Q ss_pred             HHHH
Q psy7275          81 LIKL   84 (150)
Q Consensus        81 ~I~e   84 (150)
                      .+..
T Consensus       162 ~l~G  165 (302)
T 2yv5_A          162 YLEG  165 (302)
T ss_dssp             HTTT
T ss_pred             hccC
Confidence            7753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.09  E-value=3.2e-06  Score=62.95  Aligned_cols=58  Identities=17%  Similarity=0.021  Sum_probs=39.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+....     ..+...+..                  .+  .+.+++.+||++|.|++++++.|.
T Consensus       127 ~~~piiiv~NK~Dl~~~~~v-----~~~~~~~~~------------------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  181 (192)
T 2fg5_A          127 ENIVMAIAGNKCDLSDIREV-----PLKDAKEYA------------------ES--IGAIVVETSAKNAINIEELFQGIS  181 (192)
T ss_dssp             TTCEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HT--TTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCcEEEEEECccccccccc-----CHHHHHHHH------------------HH--cCCEEEEEeCCCCcCHHHHHHHHH
Confidence            36899999999998642211     011111111                  01  146899999999999999999998


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       182 ~~i  184 (192)
T 2fg5_A          182 RQI  184 (192)
T ss_dssp             HTC
T ss_pred             HHH
Confidence            755

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.09  E-value=4.3e-06  Score=63.74  Aligned_cols=59  Identities=10%  Similarity=-0.000  Sum_probs=39.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....     .+......                  ..  .+.+++.+||++|.|+++++..|.
T Consensus       130 ~~~piilv~NK~Dl~~~~~v~-----~~~~~~~~------------------~~--~~~~~~~~Sa~~g~gv~~l~~~l~  184 (201)
T 2ew1_A          130 NKVITVLVGNKIDLAERREVS-----QQRAEEFS------------------EA--QDMYYLETSAKESDNVEKLFLDLA  184 (201)
T ss_dssp             TTCEEEEEEECGGGGGGCSSC-----HHHHHHHH------------------HH--HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCccccccC-----HHHHHHHH------------------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            468999999999986432210     00000000                  01  146899999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       185 ~~i~  188 (201)
T 2ew1_A          185 CRLI  188 (201)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.09  E-value=1.4e-06  Score=63.56  Aligned_cols=26  Identities=38%  Similarity=0.423  Sum_probs=22.7

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      +.+++.+||++|+|+++++..|.+.+
T Consensus       138 ~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          138 GVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             TSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            36899999999999999999987653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.08  E-value=5.2e-06  Score=67.74  Aligned_cols=58  Identities=19%  Similarity=0.350  Sum_probs=43.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|.|+|+||+|+.+......|.+-++                           ..+++++.+||.+|.|+++|++.+.
T Consensus        49 ~~kp~ilVlNK~DL~~~~~~~~~~~~~~---------------------------~~g~~~i~iSA~~~~gi~~L~~~i~  101 (282)
T 1puj_A           49 KNKPRIMLLNKADKADAAVTQQWKEHFE---------------------------NQGIRSLSINSVNGQGLNQIVPASK  101 (282)
T ss_dssp             SSSCEEEEEECGGGSCHHHHHHHHHHHH---------------------------TTTCCEEECCTTTCTTGGGHHHHHH
T ss_pred             CCCCEEEEEECcccCCHHHHHHHHHHHH---------------------------hcCCcEEEEECCCcccHHHHHHHHH
Confidence            3679999999999987554445552110                           0146899999999999999999888


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       102 ~~l~~  106 (282)
T 1puj_A          102 EILQE  106 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.07  E-value=4.2e-06  Score=63.14  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.4

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..+++.+||++|+|++++++.|.+
T Consensus       172 ~~~~~~~SA~~g~gv~~l~~~l~~  195 (198)
T 1f6b_A          172 PLEVFMCSVLKRQGYGEGFRWMAQ  195 (198)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999998865

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.33  E-value=5.2e-07  Score=67.80  Aligned_cols=69  Identities=13%  Similarity=0.146  Sum_probs=39.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+.....+++.+...  ..+..+  ....+.        .-+...+++.+||++|+|++++++.|.+
T Consensus       134 ~~piilv~NK~Dl~~~~~~~~~~~~~~~--~~v~~~--~~~~~~--------~~~~~~~~~~vSA~~g~gi~~l~~~l~~  201 (204)
T 3th5_A          134 NTPIILVGTKLDLRDDKDTIEKLKEKKL--TPITYP--QGLAMA--------KEIGAVKYLECSALTQRGLKTVFDEAIR  201 (204)
Confidence            6899999999999765432222211100  000000  000010        1111137889999999999999998876


Q ss_pred             H
Q psy7275          85 A   85 (150)
Q Consensus        85 ~   85 (150)
                      .
T Consensus       202 ~  202 (204)
T 3th5_A          202 A  202 (204)
Confidence            4

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.06  E-value=1.5e-05  Score=59.96  Aligned_cols=27  Identities=19%  Similarity=0.129  Sum_probs=23.7

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      +.+++.+||++|.|+++++..|.+.+.
T Consensus       145 ~~~~~e~SA~~g~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          145 DXKFIETSAAVQHNVKELFEGIVRQVR  171 (192)
T ss_dssp             TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCceEEeccccCCCHHHHHHHHHHHHH
Confidence            358899999999999999999987664

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.04  E-value=4.3e-06  Score=59.64  Aligned_cols=60  Identities=18%  Similarity=0.069  Sum_probs=38.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....+..  .+.. ..          +.       ..  .+.+++.+||++|.|+++++..|.
T Consensus       107 ~~~piilv~nK~Dl~~~~~~~~v~--~~~~-~~----------~~-------~~--~~~~~~~~Sa~~~~gi~~l~~~l~  164 (170)
T 1ek0_A          107 KDIIIALVGNKIDXLQEGGERKVA--REEG-EK----------LA-------EE--KGLLFFETSAKTGENVNDVFLGIG  164 (170)
T ss_dssp             TTCEEEEEEECGGGGGSSCCCCSC--HHHH-HH----------HH-------HH--HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEEECCCccccccccCCC--HHHH-HH----------HH-------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            478999999999986542110000  0000 00          00       01  146899999999999999999987


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       165 ~~  166 (170)
T 1ek0_A          165 EK  166 (170)
T ss_dssp             TT
T ss_pred             HH
Confidence            54

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.04  E-value=6.7e-06  Score=69.45  Aligned_cols=57  Identities=18%  Similarity=0.210  Sum_probs=39.7

Q ss_pred             CCCEEEeeecCCCCCch----hhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHK----YAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~----~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~   79 (150)
                      +.|+|+|+||+|+.+.+    ...+|+..+      ..                  +. +...+++.|||++|.|+++|+
T Consensus        96 ~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~------~~------------------~~g~~~~~v~~iSA~~g~gi~~L~  151 (368)
T 3h2y_A           96 NNKVLLVGNKADLIPKSVKHDKVKHWMRYS------AK------------------QLGLKPEDVFLISAAKGQGIAELA  151 (368)
T ss_dssp             SSCEEEEEECGGGSCTTSCHHHHHHHHHHH------HH------------------HTTCCCSEEEECCTTTCTTHHHHH
T ss_pred             CCcEEEEEEChhcCCcccCHHHHHHHHHHH------HH------------------HcCCCcccEEEEeCCCCcCHHHHH
Confidence            67999999999997654    223444211      00                  10 112378999999999999999


Q ss_pred             HHHHHH
Q psy7275          80 QLIKLA   85 (150)
Q Consensus        80 ~~I~e~   85 (150)
                      +.|.+.
T Consensus       152 ~~l~~~  157 (368)
T 3h2y_A          152 DAIEYY  157 (368)
T ss_dssp             HHHHHH
T ss_pred             hhhhhh
Confidence            998764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.03  E-value=5.2e-06  Score=63.51  Aligned_cols=60  Identities=10%  Similarity=0.003  Sum_probs=38.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....     .+.....                  ...  .+++++.+||++|+|+++++..|.
T Consensus       117 ~~~piilv~nK~Dl~~~~~v~-----~~~~~~~------------------~~~--~~~~~~~~Sa~~~~gi~~l~~~l~  171 (223)
T 3cpj_B          117 DNVAVGLIGNKSDLAHLRAVP-----TEESKTF------------------AQE--NQLLFTETSALNSENVDKAFEELI  171 (223)
T ss_dssp             --CEEEEEECCGGGGGGCCSC-----HHHHHHH------------------HHH--TTCEEEECCCC-CCCHHHHHHHHH
T ss_pred             CCCeEEEEEECcccccccccC-----HHHHHHH------------------HHH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            368999999999986432210     0000000                  011  246899999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       172 ~~i~~  176 (223)
T 3cpj_B          172 NTIYQ  176 (223)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            77643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.03  E-value=4.3e-06  Score=62.57  Aligned_cols=66  Identities=21%  Similarity=0.124  Sum_probs=38.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+...       .+.+.+.+.....    .....   + .-....+++.+||++|+|++++++.|.
T Consensus       123 ~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~----~~~~~---~-~~~~~~~~~~~Sa~~g~gi~~l~~~l~  187 (190)
T 1m2o_B          123 KDVPFVILGNKIDAPNAVS-------EAELRSALGLLNT----TGSQR---I-EGQRPVEVFMCSVVMRNGYLEAFQWLS  187 (190)
T ss_dssp             TTCCEEEEEECTTSTTCCC-------HHHHHHHTTCSSC----CC------C-CSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             cCCCEEEEEECCCCcCCCC-------HHHHHHHhCCccc----ccccc---c-cccceEEEEEeECCcCCCHHHHHHHHH
Confidence            4789999999999975221       1112222210000    00000   0 001245899999999999999999886


Q ss_pred             H
Q psy7275          84 L   84 (150)
Q Consensus        84 e   84 (150)
                      +
T Consensus       188 ~  188 (190)
T 1m2o_B          188 Q  188 (190)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.02  E-value=4.6e-06  Score=59.29  Aligned_cols=53  Identities=23%  Similarity=0.234  Sum_probs=37.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+...   .+.++                        . + +...+++.+||++|.|++++++.|.
T Consensus       107 ~~~p~ilv~nK~Dl~~~~~---~~~~~------------------------~-~-~~~~~~~~~Sa~~~~gv~~l~~~l~  157 (161)
T 2dyk_A          107 KGKPVILVATKVDDPKHEL---YLGPL------------------------Y-G-LGFGDPIPTSSEHARGLEELLEAIW  157 (161)
T ss_dssp             HTCCEEEEEECCCSGGGGG---GCGGG------------------------G-G-GSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred             cCCCEEEEEECcccccchH---hHHHH------------------------H-h-CCCCCeEEEecccCCChHHHHHHHH
Confidence            3689999999999865421   11000                        0 1 1112789999999999999999987


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       158 ~~  159 (161)
T 2dyk_A          158 ER  159 (161)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.02  E-value=5.4e-06  Score=62.14  Aligned_cols=59  Identities=15%  Similarity=0.073  Sum_probs=39.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~~   81 (150)
                      .+.|+|+|+||+|+.+.....+       +.+.+..                 .+.  ...+++.+||++|.|++++++.
T Consensus       129 ~~~piilv~NK~Dl~~~~~~~~-------i~~~~~~-----------------~~~~~~~~~~~~~SA~~g~gi~~l~~~  184 (192)
T 2b6h_A          129 RDAVLLVFANKQDMPNAMPVSE-------LTDKLGL-----------------QHLRSRTWYVQATCATQGTGLYDGLDW  184 (192)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHH-------HHHHTTG-----------------GGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             CCCeEEEEEECCCCCCCCCHHH-------HHHHhCc-----------------ccccCCceEEEECcCCCcCCHHHHHHH
Confidence            3689999999999976432111       1111110                 011  1347899999999999999999


Q ss_pred             HHHHH
Q psy7275          82 IKLAG   86 (150)
Q Consensus        82 I~e~~   86 (150)
                      |.+.+
T Consensus       185 l~~~i  189 (192)
T 2b6h_A          185 LSHEL  189 (192)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            87654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.02  E-value=1.4e-05  Score=68.30  Aligned_cols=70  Identities=17%  Similarity=0.227  Sum_probs=46.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.....     ++.+.+.+..          .+     .+....+++++||+||.|+++++..+.
T Consensus       285 ~~~~iiiv~NK~Dl~~~~~~~-----~~~~~~~~~~----------~l-----~~~~~~~~~~~SA~tg~~v~~l~~~i~  344 (436)
T 2hjg_A          285 AGKAVVIVVNKWDAVDKDEST-----MKEFEENIRD----------HF-----QFLDYAPILFMSALTKKRIHTLMPAII  344 (436)
T ss_dssp             TTCEEEEEEECGGGSCCCTTH-----HHHHHHHHHH----------HC-----GGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred             cCCcEEEEEECccCCCcchHH-----HHHHHHHHHH----------hc-----ccCCCCCEEEEecccCCCHHHHHHHHH
Confidence            468999999999997643310     1111111110          00     122357999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy7275          84 LAGEDYEKNY   93 (150)
Q Consensus        84 e~~~ey~~~y   93 (150)
                      +...++....
T Consensus       345 ~~~~~~~~~~  354 (436)
T 2hjg_A          345 KASENHSLRV  354 (436)
T ss_dssp             HHHHHHTCCC
T ss_pred             HHHHHhhcCC
Confidence            8887765443

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.00  E-value=1e-05  Score=60.50  Aligned_cols=26  Identities=12%  Similarity=-0.034  Sum_probs=23.1

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      +.+++.+||++|.|+++++..|.+.+
T Consensus       170 ~~~~~~~SA~~g~gv~el~~~l~~~i  195 (199)
T 2p5s_A          170 GALFCETSAKDGSNIVEAVLHLAREV  195 (199)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999987765

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.00  E-value=4e-06  Score=71.11  Aligned_cols=60  Identities=20%  Similarity=0.184  Sum_probs=33.7

Q ss_pred             CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275           7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus         7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      |+|+|+||+|+.+.+...+.   ++.+.+.+..                 .+....+++++||++|+|+++|++.|.+.+
T Consensus       137 ~iivv~NK~Dl~~~~~~~~~---~~~i~~~l~~-----------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          137 KIIIVQNKIDLVDEKQAEEN---YEQIKEFVKG-----------------TIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             CEEEEEECTTSSCTTTTTTH---HHHHHHHHTT-----------------STTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             eEEEEEEccCCCCHHHHHHH---HHHHHHHHhh-----------------cCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            79999999999875432111   1222221110                 012357999999999999999999987643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.99  E-value=5.4e-06  Score=61.03  Aligned_cols=58  Identities=12%  Similarity=0.090  Sum_probs=38.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+.....+       +.+.+..                ..+ ....+++.+||++|.|++++++.|
T Consensus       121 ~~~piilv~NK~Dl~~~~~~~~-------i~~~~~~----------------~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  177 (181)
T 2h17_A          121 RKAGLLIFANKQDVKECMTVAE-------ISQFLKL----------------TSIKDHQWHIQACCALTGEGLCQGLEWM  177 (181)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHH-------HHHHTTG----------------GGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             CCCeEEEEEECCCcccCCCHHH-------HHHHhCc----------------ccccCCceEEEEccCCCCcCHHHHHHHH
Confidence            5789999999999976422111       1111110                000 123488999999999999999988


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      .+
T Consensus       178 ~~  179 (181)
T 2h17_A          178 MS  179 (181)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.98  E-value=1.2e-05  Score=68.73  Aligned_cols=70  Identities=16%  Similarity=0.242  Sum_probs=46.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+.+..     ..+.+.+.+..          .+     .+....+++.+||++|.|+++|++.|.
T Consensus       291 ~~~~~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~----------~~-----~~~~~~~~~~~SA~~g~gv~~l~~~i~  350 (439)
T 1mky_A          291 RGRASVVVFNKWDLVVHREK-----RYDEFTKLFRE----------KL-----YFIDYSPLIFTSADKGWNIDRMIDAMN  350 (439)
T ss_dssp             TTCEEEEEEECGGGSTTGGG-----CHHHHHHHHHH----------HC-----GGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred             cCCCEEEEEECccCCCchhh-----HHHHHHHHHHH----------Hh-----ccCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            57899999999998764321     11111122210          00     122356899999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy7275          84 LAGEDYEKNY   93 (150)
Q Consensus        84 e~~~ey~~~y   93 (150)
                      +...++....
T Consensus       351 ~~~~~~~~~i  360 (439)
T 1mky_A          351 LAYASYTTKV  360 (439)
T ss_dssp             HHHHHHTCCC
T ss_pred             HHHHhhcccC
Confidence            8887765433

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.98  E-value=9e-06  Score=64.88  Aligned_cols=70  Identities=13%  Similarity=0.095  Sum_probs=40.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+.....+++.+.      ......  ......    +.+.+...+++.|||++|.|+++++..|.+
T Consensus       259 ~~p~ilv~nK~Dl~~~~~~~~~~~~~------~~~~v~--~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  326 (332)
T 2wkq_A          259 NTPIILVGTKLDLRDDKDTIEKLKEK------KLTPIT--YPQGLA----MAKEIGAVKYLECSALTQRGLKTVFDEAIR  326 (332)
T ss_dssp             TSCEEEEEECHHHHTCHHHHHHHHHT------TCCCCC--HHHHHH----HHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCcEEEEEEchhcccccchhhhcccc------cccccc--HHHHHH----HHHHcCCcEEEEecCCCCcCHHHHHHHHHH
Confidence            78999999999986554322211100      000000  000000    111122248999999999999999999887


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       327 ~~  328 (332)
T 2wkq_A          327 AV  328 (332)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=97.98  E-value=1.1e-06  Score=74.01  Aligned_cols=61  Identities=25%  Similarity=0.281  Sum_probs=42.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+...      ..+.+.+                     .+....+++.|||++|+|+++|+..|.
T Consensus       273 ~~~p~ilV~NK~Dl~~~~e------~~~~l~~---------------------~l~~~~~v~~iSA~tg~gi~eL~~~l~  325 (342)
T 1lnz_A          273 TERPQIIVANKMDMPEAAE------NLEAFKE---------------------KLTDDYPVFPISAVTREGLRELLFEVA  325 (342)
T ss_dssp             TTSCBCBEEECTTSTTHHH------HHHHHHH---------------------HCCSCCCBCCCSSCCSSTTHHHHHHHH
T ss_pred             cCCCEEEEEECccCCCCHH------HHHHHHH---------------------HhhcCCCEEEEECCCCcCHHHHHHHHH
Confidence            4789999999999875331      1111111                     111125889999999999999999999


Q ss_pred             HHHHHHHh
Q psy7275          84 LAGEDYEK   91 (150)
Q Consensus        84 e~~~ey~~   91 (150)
                      +.+.+...
T Consensus       326 ~~l~~~~~  333 (342)
T 1lnz_A          326 NQLENTPE  333 (342)
T ss_dssp             HHHTSCCC
T ss_pred             HHHhhCcc
Confidence            88865443

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=97.97  E-value=4.7e-06  Score=63.40  Aligned_cols=57  Identities=19%  Similarity=0.170  Sum_probs=40.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+.....+..    .+.              .       .  .+++++.+||++|.|+++++..|.+
T Consensus       119 ~~p~ilv~nK~Dl~~~~~~~~~~----~~~--------------~-------~--~~~~~~~~Sa~~~~gi~~l~~~l~~  171 (221)
T 3gj0_A          119 NIPIVLCGNKVDIKDRKVKAKSI----VFH--------------R-------K--KNLQYYDISAKSNYNFEKPFLWLAR  171 (221)
T ss_dssp             TCCEEEEEECTTSSSCSSCGGGC----CHH--------------H-------H--HTCEEEECBGGGTBTTTHHHHHHHH
T ss_pred             CCCEEEEEECCccccccccHHHH----HHH--------------H-------H--cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            78999999999997543211100    000              0       1  1468999999999999999999988


Q ss_pred             HHHH
Q psy7275          85 AGED   88 (150)
Q Consensus        85 ~~~e   88 (150)
                      .+..
T Consensus       172 ~l~~  175 (221)
T 3gj0_A          172 KLIG  175 (221)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            7743

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=97.97  E-value=7.2e-06  Score=65.03  Aligned_cols=57  Identities=18%  Similarity=0.075  Sum_probs=39.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.+....    ++.   .+..                  .+ ..+.+++.+||++|.|+++++..|.
T Consensus       197 ~~~piilV~NK~Dl~~~~~v----~~~---~~~~------------------~~-~~~~~~~e~SAk~g~gv~elf~~l~  250 (255)
T 3c5h_A          197 TKKPIVVVLTKCDEGVERYI----RDA---HTFA------------------LS-KKNLQVVETSARSNVNVDLAFSTLV  250 (255)
T ss_dssp             TTCCEEEEEECGGGBCHHHH----HHH---HHHH------------------HT-SSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCCEEEEEEcccccccHHH----HHH---HHHH------------------Hh-cCCCeEEEEECCCCCCHHHHHHHHH
Confidence            36899999999998543221    000   0000                  01 1246899999999999999999997


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       251 ~~l  253 (255)
T 3c5h_A          251 QLI  253 (255)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.97  E-value=4.1e-05  Score=63.97  Aligned_cols=28  Identities=32%  Similarity=0.343  Sum_probs=24.9

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~ey   89 (150)
                      .+++++||++|+|+++|++.|.+...++
T Consensus       253 ~~vi~iSA~~g~Gi~~L~~~I~~~~~~~  280 (349)
T 2www_A          253 PKVIRISARSGEGISEMWDKMKDFQDLM  280 (349)
T ss_dssp             CEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence            5789999999999999999999987653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.97  E-value=7e-06  Score=67.12  Aligned_cols=55  Identities=24%  Similarity=0.298  Sum_probs=37.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcC-CcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYST-LKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~-l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+.... +      ...+.+                   +.|.. .+++.+||++|.|+++++..+
T Consensus       114 ~~~piilv~NK~DL~~~~~v-~------~~~~~~-------------------~~~~~~~~~~~~SAktg~gv~~lf~~l  167 (301)
T 1u0l_A          114 NELETVMVINKMDLYDEDDL-R------KVRELE-------------------EIYSGLYPIVKTSAKTGMGIEELKEYL  167 (301)
T ss_dssp             TTCEEEEEECCGGGCCHHHH-H------HHHHHH-------------------HHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             CCCCEEEEEeHHHcCCchhH-H------HHHHHH-------------------HHHhhhCcEEEEECCCCcCHHHHHHHh
Confidence            36899999999999764321 0      011111                   11222 589999999999999999887


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      ..
T Consensus       168 ~g  169 (301)
T 1u0l_A          168 KG  169 (301)
T ss_dssp             SS
T ss_pred             cC
Confidence            54

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.96  E-value=1.1e-05  Score=59.63  Aligned_cols=58  Identities=10%  Similarity=0.096  Sum_probs=37.6

Q ss_pred             CCCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCC---CCHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSG---EGTEEL   78 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TG---eGideL   78 (150)
                      ..++|+|+|+||+|+.+.... .+..      . .+          .       ..  .+++++.+||++|   .|++++
T Consensus       125 ~~~~piilv~nK~Dl~~~~~v~~~~~------~-~~----------~-------~~--~~~~~~~~Sa~~~~~~~~i~~l  178 (189)
T 1z06_A          125 ANDIPRILVGNKCDLRSAIQVPTDLA------Q-KF----------A-------DT--HSMPLFETSAKNPNDNDHVEAI  178 (189)
T ss_dssp             CSCCCEEEEEECTTCGGGCCSCHHHH------H-HH----------H-------HH--TTCCEEECCSSSGGGGSCHHHH
T ss_pred             CCCCCEEEEEECccccccceeCHHHH------H-HH----------H-------HH--cCCEEEEEeCCcCCcccCHHHH
Confidence            457899999999998643221 1100      0 00          0       01  2468999999999   999999


Q ss_pred             HHHHHHHH
Q psy7275          79 LQLIKLAG   86 (150)
Q Consensus        79 ~~~I~e~~   86 (150)
                      +..|.+.+
T Consensus       179 ~~~l~~~i  186 (189)
T 1z06_A          179 FMTLAHKL  186 (189)
T ss_dssp             HHHHC---
T ss_pred             HHHHHHHH
Confidence            99987654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.95  E-value=5.7e-06  Score=61.63  Aligned_cols=58  Identities=12%  Similarity=0.044  Sum_probs=39.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeec-CCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSS-VSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA-~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+....     ..+...+           +.       .++  +++++.+|| ++|.|++++++.|
T Consensus       126 ~~~piilv~nK~Dl~~~~~v-----~~~~~~~-----------~~-------~~~--~~~~~e~Sa~~~g~gv~~lf~~l  180 (187)
T 3c5c_A          126 RSIPALLLGNKLDMAQYRQV-----TKAEGVA-----------LA-------GRF--GCLFFEVSACLDFEHVQHVFHEA  180 (187)
T ss_dssp             CCCCEEEEEECGGGGGGCSS-----CHHHHHH-----------HH-------HHH--TCEEEECCSSSCSHHHHHHHHHH
T ss_pred             CCCCEEEEEECcchhhcCcc-----CHHHHHH-----------HH-------HHc--CCcEEEEeecCccccHHHHHHHH
Confidence            47899999999998543211     0110011           00       111  468999999 8999999999998


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       181 ~~~i  184 (187)
T 3c5c_A          181 VREA  184 (187)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.95  E-value=8.9e-06  Score=67.26  Aligned_cols=61  Identities=18%  Similarity=0.070  Sum_probs=41.0

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+.....+       +...+....               -.....+++.|||++|.|++++++.|.+
T Consensus       266 ~~piilV~NK~Dl~~~~~~~~-------i~~~~~~~~---------------~~~~~~~~~~vSAk~g~gi~el~~~l~~  323 (329)
T 3o47_A          266 DAVLLVFANKQDLPNAMNAAE-------ITDKLGLHS---------------LRHRNWYIQATCATSGDGLYEGLDWLSN  323 (329)
T ss_dssp             TCEEEEEEECTTSTTCCCHHH-------HHHHHTCTT---------------CCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             CCeEEEEEECccCCcccCHHH-------HHHHhchhh---------------hhcCCCEEEEEECCCCcCHHHHHHHHHH
Confidence            789999999999976543221       112111000               0012357999999999999999999987


Q ss_pred             HHH
Q psy7275          85 AGE   87 (150)
Q Consensus        85 ~~~   87 (150)
                      .+.
T Consensus       324 ~l~  326 (329)
T 3o47_A          324 QLR  326 (329)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.94  E-value=6.3e-06  Score=69.82  Aligned_cols=60  Identities=17%  Similarity=0.217  Sum_probs=39.4

Q ss_pred             CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275           7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus         7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      |+|+|+||+|+.+.+...+.   ++.+.+.+..                 .+....+++++||++|.|+++|++.|.+.+
T Consensus       139 ~iivviNK~Dl~~~~~~~~~---~~~i~~~l~~-----------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          139 NIIIAQNKIELVDKEKALEN---YRQIKEFIEG-----------------TVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             CEEEEEECGGGSCHHHHHHH---HHHHHHHHTT-----------------STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             cEEEEEECccCCCHHHHHHH---HHHHHHHHHh-----------------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            79999999999875432111   1111111110                 012357999999999999999999887643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.94  E-value=2.5e-06  Score=63.04  Aligned_cols=51  Identities=22%  Similarity=0.263  Sum_probs=37.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+...  +|.                             + ....+++.+||++|+|+++++..|.
T Consensus       114 ~~~p~ilv~NK~Dl~~~~~--~~~-----------------------------~-~~~~~~~~~SA~~g~gv~~l~~~l~  161 (172)
T 2gj8_A          114 AKLPITVVRNKADITGETL--GMS-----------------------------E-VNGHALIRLSARTGEGVDVLRNHLK  161 (172)
T ss_dssp             TTCCEEEEEECHHHHCCCC--EEE-----------------------------E-ETTEEEEECCTTTCTTHHHHHHHHH
T ss_pred             cCCCEEEEEECccCCcchh--hhh-----------------------------h-ccCCceEEEeCCCCCCHHHHHHHHH
Confidence            3689999999999843211  010                             0 0135889999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       162 ~~~  164 (172)
T 2gj8_A          162 QSM  164 (172)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.92  E-value=1.1e-05  Score=68.00  Aligned_cols=58  Identities=19%  Similarity=0.313  Sum_probs=39.9

Q ss_pred             CCCEEEeeecCCCCCchh----hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKY----AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~----~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~   79 (150)
                      +.|+|+|+||+|+.+.+.    ..+|+.++      +.                  +. +...+++.|||++|.|+++|+
T Consensus        98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~------~~------------------~~g~~~~~v~~iSA~~g~gi~~L~  153 (369)
T 3ec1_A           98 DNPILLVGNKADLLPRSVKYPKLLRWMRRM------AE------------------ELGLCPVDVCLVSAAKGIGMAKVM  153 (369)
T ss_dssp             TSCEEEEEECGGGSCTTCCHHHHHHHHHHH------HH------------------TTTCCCSEEEECBTTTTBTHHHHH
T ss_pred             CCCEEEEEEChhcCCCccCHHHHHHHHHHH------HH------------------HcCCCcccEEEEECCCCCCHHHHH
Confidence            579999999999986532    23444211      10                  00 112378999999999999999


Q ss_pred             HHHHHHH
Q psy7275          80 QLIKLAG   86 (150)
Q Consensus        80 ~~I~e~~   86 (150)
                      +.|.+..
T Consensus       154 ~~I~~~~  160 (369)
T 3ec1_A          154 EAINRYR  160 (369)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            9987653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=97.90  E-value=7.8e-06  Score=62.50  Aligned_cols=28  Identities=7%  Similarity=0.019  Sum_probs=24.3

Q ss_pred             CC-cEEEeecCCCCC-HHHHHHHHHHHHHH
Q psy7275          61 TL-KVVGFSSVSGEG-TEELLQLIKLAGED   88 (150)
Q Consensus        61 ~l-~vv~VSA~TGeG-ideL~~~I~e~~~e   88 (150)
                      +. +++.|||++|.| +++++..|.+.+.+
T Consensus       174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             TCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence            35 899999999999 99999999887653

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.87  E-value=7.5e-07  Score=73.22  Aligned_cols=55  Identities=15%  Similarity=0.053  Sum_probs=40.6

Q ss_pred             CCCEEEeeecCCCCCchh-hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKY-AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~-~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      +.|+|+|+||+|+.+... ..+          .+.                  ++....++++|||++|.|+++|++.|.
T Consensus       117 ~~p~ilV~NK~Dl~~~~~~~~~----------~~~------------------~~~~~~~~~~iSA~~g~gv~~l~~~l~  168 (301)
T 1wf3_A          117 KVPILLVGNKLDAAKYPEEAMK----------AYH------------------ELLPEAEPRMLSALDERQVAELKADLL  168 (301)
T ss_dssp             TSCEEEEEECGGGCSSHHHHHH----------HHH------------------HTSTTSEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECcccCCchHHHHH----------HHH------------------HhcCcCcEEEEeCCCCCCHHHHHHHHH
Confidence            789999999999976543 111          111                  112235789999999999999999998


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       169 ~~l~  172 (301)
T 1wf3_A          169 ALMP  172 (301)
T ss_dssp             TTCC
T ss_pred             Hhcc
Confidence            8664

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.82  E-value=3e-06  Score=69.33  Aligned_cols=60  Identities=15%  Similarity=0.176  Sum_probs=40.5

Q ss_pred             CCCCEEEeeecCCCCCc-hhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNH-KYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~-~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|.|+|+||+|+.+. ....+++       +.+.                  +.+....+++|||++|.|+++|++.|
T Consensus       115 ~~~P~ilvlNK~D~~~~~~~~~~~l-------~~l~------------------~~~~~~~~i~iSA~~g~~v~~l~~~i  169 (301)
T 1ega_A          115 GKAPVILAVNKVDNVQEKADLLPHL-------QFLA------------------SQMNFLDIVPISAETGLNVDTIAAIV  169 (301)
T ss_dssp             SSSCEEEEEESTTTCCCHHHHHHHH-------HHHH------------------TTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred             cCCCEEEEEECcccCccHHHHHHHH-------HHHH------------------HhcCcCceEEEECCCCCCHHHHHHHH
Confidence            47899999999999762 2111111       1110                  11112378999999999999999999


Q ss_pred             HHHHHH
Q psy7275          83 KLAGED   88 (150)
Q Consensus        83 ~e~~~e   88 (150)
                      ...+.+
T Consensus       170 ~~~l~~  175 (301)
T 1ega_A          170 RKHLPE  175 (301)
T ss_dssp             HTTCCB
T ss_pred             HHhCCc
Confidence            876543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.82  E-value=1.9e-05  Score=69.02  Aligned_cols=59  Identities=17%  Similarity=0.102  Sum_probs=36.1

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+.....     .+.+.+...                  .  .+.+++.|||++|.|+++|+..|.+
T Consensus       150 ~~pvilV~NK~Dl~~~~~v~-----~~~~~~~~~------------------~--~~~~~~~vSA~~g~gi~eL~~~l~~  204 (535)
T 3dpu_A          150 KSPVIVVMNKIDENPSYNIE-----QKKINERFP------------------A--IENRFHRISCKNGDGVESIAKSLKS  204 (535)
T ss_dssp             SCCEEEEECCTTTCTTCCCC-----HHHHHHHCG------------------G--GTTCEEECCC-----CTTHHHHHHH
T ss_pred             CCCEEEEEECCCcccccccC-----HHHHHHHHH------------------h--cCCceEEEecCcccCHHHHHHHHHH
Confidence            58999999999997543210     111111110                  0  1357999999999999999999998


Q ss_pred             HHHH
Q psy7275          85 AGED   88 (150)
Q Consensus        85 ~~~e   88 (150)
                      .+.+
T Consensus       205 ~~~~  208 (535)
T 3dpu_A          205 AVLH  208 (535)
T ss_dssp             HHTC
T ss_pred             HHhc
Confidence            8754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=97.81  E-value=0.00011  Score=64.41  Aligned_cols=55  Identities=22%  Similarity=0.274  Sum_probs=39.1

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+...       .+.+.+.                     +....+++.|||++|+|+++|++.|.+
T Consensus       350 ~~piivV~NK~DL~~~~~-------~~~~~~~---------------------~~~~~~~i~iSAktg~Gi~eL~~~l~~  401 (482)
T 1xzp_A          350 NKRYLVVINKVDVVEKIN-------EEEIKNK---------------------LGTDRHMVKISALKGEGLEKLEESIYR  401 (482)
T ss_dssp             TSSEEEEEEECSSCCCCC-------HHHHHHH---------------------HTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             CCCEEEEEECcccccccC-------HHHHHHH---------------------hcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            579999999999965311       1111110                     011358999999999999999999988


Q ss_pred             HHH
Q psy7275          85 AGE   87 (150)
Q Consensus        85 ~~~   87 (150)
                      .+.
T Consensus       402 ~~~  404 (482)
T 1xzp_A          402 ETQ  404 (482)
T ss_dssp             HTH
T ss_pred             HHh
Confidence            654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.80  E-value=1.2e-05  Score=64.92  Aligned_cols=53  Identities=17%  Similarity=0.113  Sum_probs=38.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|.|+|+||+|+.+.+....|.+-++                         +  .+.++ .+||.+|.|+++|+..+.+
T Consensus        46 ~k~~iivlNK~DL~~~~~~~~~~~~~~-------------------------~--~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           46 RKETIILLNKVDIADEKTTKKWVEFFK-------------------------K--QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TSEEEEEEECGGGSCHHHHHHHHHHHH-------------------------H--TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             CCCcEEEEECccCCCHHHHHHHHHHHH-------------------------H--cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            679999999999988655556653221                         0  13567 8999999999988887755


Q ss_pred             H
Q psy7275          85 A   85 (150)
Q Consensus        85 ~   85 (150)
                      .
T Consensus        98 ~   98 (262)
T 3cnl_A           98 R   98 (262)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.78  E-value=2.4e-05  Score=57.64  Aligned_cols=26  Identities=15%  Similarity=0.287  Sum_probs=22.6

Q ss_pred             CCcEEEeecC-CCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSV-SGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~-TGeGideL~~~I~e~~   86 (150)
                      ..+++.+||+ +|.|+++++..|.+.+
T Consensus       155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          155 AATYIECSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence            3689999999 6999999999988764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.76  E-value=2.5e-05  Score=66.48  Aligned_cols=51  Identities=18%  Similarity=0.154  Sum_probs=33.1

Q ss_pred             CCCCEEEeeecCCCCCchh---hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKY---AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~---~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~   80 (150)
                      .++|.|+|+||+|+.+.+.   ..+|+..|.    .                       .+++++.|||.+|.|+++|..
T Consensus       159 ~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~----~-----------------------~G~~v~~~Sa~~~~gl~~L~~  211 (358)
T 2rcn_A          159 LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR----N-----------------------IGYRVLMVSSHTQDGLKPLEE  211 (358)
T ss_dssp             HTCEEEEEEECGGGCCHHHHHHHHHHHHHHH----T-----------------------TTCCEEECBTTTTBTHHHHHH
T ss_pred             cCCCEEEEEECccCCCchhHHHHHHHHHHHH----h-----------------------CCCcEEEEecCCCcCHHHHHH
Confidence            5789999999999987653   234553221    1                       134677777777777766654


Q ss_pred             H
Q psy7275          81 L   81 (150)
Q Consensus        81 ~   81 (150)
                      .
T Consensus       212 ~  212 (358)
T 2rcn_A          212 A  212 (358)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.75  E-value=0.00028  Score=58.75  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=25.0

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~ey   89 (150)
                      .+++.+||++|.|+++|++.|.+....+
T Consensus       235 ~~vl~~Sal~g~gi~~L~~~I~~~~~~~  262 (337)
T 2qm8_A          235 PPVVTISGLHGKGLDSLWSRIEDHRSKL  262 (337)
T ss_dssp             CCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            5789999999999999999999987644

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=97.75  E-value=3e-06  Score=63.46  Aligned_cols=58  Identities=10%  Similarity=0.008  Sum_probs=33.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+......  .+...+.                     ..  .+++++.+||++|.|+++++..|.
T Consensus       137 ~~~p~ilv~nK~Dl~~~~~v~~--~~~~~~~---------------------~~--~~~~~~~vSA~~g~gv~~l~~~l~  191 (199)
T 3l0i_B          137 ENVNKLLVGNKCDLTTKKVVDY--TTAKEFA---------------------DS--LGIPFLETSAKNATNVEQSFMTMA  191 (199)
T ss_dssp             CCSEEEEC-CCSSCC--CCCCS--CC-CHHH---------------------HT--TTCCBCCCCC---HHHHHHHHHHT
T ss_pred             CCCCEEEEEECccCCccccCCH--HHHHHHH---------------------HH--cCCeEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999965432100  0000000                     01  146889999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       192 ~~l  194 (199)
T 3l0i_B          192 AEI  194 (199)
T ss_dssp             TTT
T ss_pred             HHH
Confidence            654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.74  E-value=4.2e-05  Score=64.57  Aligned_cols=64  Identities=20%  Similarity=0.191  Sum_probs=41.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+|+|+||+|+.+... .........              +       ...+ ....++++|||++|+|+++|++.|
T Consensus       291 ~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~--------------l-------~~~l~~~~~~~~~~SA~~g~gi~~L~~~I  348 (364)
T 2qtf_A          291 SGKPILVTLNKIDKINGDL-YKKLDLVEK--------------L-------SKELYSPIFDVIPISALKRTNLELLRDKI  348 (364)
T ss_dssp             CSCCEEEEEECGGGCCSCH-HHHHHHHHH--------------H-------HHHHCSCEEEEEECBTTTTBSHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCchH-HHHHHHHHH--------------H-------HHHhcCCCCcEEEEECCCCcCHHHHHHHH
Confidence            3579999999999976431 111100000              0       0112 123467999999999999999999


Q ss_pred             HHHHHHH
Q psy7275          83 KLAGEDY   89 (150)
Q Consensus        83 ~e~~~ey   89 (150)
                      .+.+...
T Consensus       349 ~~~l~~~  355 (364)
T 2qtf_A          349 YQLATQL  355 (364)
T ss_dssp             HHHHHHH
T ss_pred             HHHhccc
Confidence            8877543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=97.74  E-value=3.5e-05  Score=67.47  Aligned_cols=55  Identities=18%  Similarity=0.288  Sum_probs=40.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+.....     .    +.+.                  +. ...+++.|||++|+|+++|++.|.+
T Consensus       343 ~~piIvV~NK~Dl~~~~~~~-----~----~~l~------------------~~-~~~~~i~vSAktg~GI~eL~~~i~~  394 (476)
T 3gee_A          343 AAKFLTVANKLDRAANADAL-----I----RAIA------------------DG-TGTEVIGISALNGDGIDTLKQHMGD  394 (476)
T ss_dssp             TSEEEEEEECTTSCTTTHHH-----H----HHHH------------------HH-HTSCEEECBTTTTBSHHHHHHHHTH
T ss_pred             CCCEEEEEECcCCCCccchh-----H----HHHH------------------hc-CCCceEEEEECCCCCHHHHHHHHHH
Confidence            57999999999997654321     0    1111                  10 1258999999999999999999998


Q ss_pred             HHH
Q psy7275          85 AGE   87 (150)
Q Consensus        85 ~~~   87 (150)
                      .+.
T Consensus       395 ~~~  397 (476)
T 3gee_A          395 LVK  397 (476)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            886

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=97.73  E-value=3.1e-05  Score=66.59  Aligned_cols=63  Identities=17%  Similarity=0.281  Sum_probs=36.4

Q ss_pred             CCCCC-EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHH
Q psy7275           3 DTGFP-YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus         3 k~~lP-~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~   79 (150)
                      ..++| +|+|+||+|+.+.++..+   .++...+.+.       .+...+     .|.  ...++++|||++|.|++++.
T Consensus       152 ~~~v~~iIvviNK~Dl~~~~~~~~---~~~~i~~~~~-------~~l~~~-----g~~~~~~~~~i~iSA~~G~ni~~l~  216 (439)
T 3j2k_7          152 TAGVKHLIVLINKMDDPTVNWSNE---RYEECKEKLV-------PFLKKV-----GFNPKKDIHFMPCSGLTGANLKEQS  216 (439)
T ss_pred             HcCCCeEEEEeecCCCcccchHHH---HHHHHHHHHH-------HHHHHh-----cccccCCeeEEEeeccCCccccccc
Confidence            35678 899999999975443211   1111111111       111111     111  14689999999999999976


Q ss_pred             H
Q psy7275          80 Q   80 (150)
Q Consensus        80 ~   80 (150)
                      +
T Consensus       217 ~  217 (439)
T 3j2k_7          217 D  217 (439)
T ss_pred             c
Confidence            5

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=97.73  E-value=1.9e-05  Score=68.84  Aligned_cols=54  Identities=17%  Similarity=0.177  Sum_probs=41.0

Q ss_pred             CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275           6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      .|+|+|+||+|+.+.....           .                  +.++....+++.|||++|+|+++|++.|.+.
T Consensus       331 ~piivV~NK~Dl~~~~~~~-----------~------------------~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~  381 (462)
T 3geh_A          331 RPLILVMNKIDLVEKQLIT-----------S------------------LEYPENITQIVHTAAAQKQGIDSLETAILEI  381 (462)
T ss_dssp             SCEEEEEECTTSSCGGGST-----------T------------------CCCCTTCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcchhhH-----------H------------------HHHhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999997654320           0                  0112234689999999999999999999988


Q ss_pred             HHH
Q psy7275          86 GED   88 (150)
Q Consensus        86 ~~e   88 (150)
                      +..
T Consensus       382 ~~~  384 (462)
T 3geh_A          382 VQT  384 (462)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.71  E-value=3.1e-05  Score=58.37  Aligned_cols=82  Identities=6%  Similarity=0.004  Sum_probs=45.4

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhc------------------hhhhhhhHHHHHHHHHHhhcCCcE
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEAD------------------SSYISNLTRSMSLALDEFYSTLKV   64 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e------------------~~y~~~L~~slsl~l~efy~~l~v   64 (150)
                      ..++|+|+|+||+|+.+.....++...+......+...                  ..+...|..++....+.++..+.+
T Consensus       118 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~l~~~~~f~~~~~~~~v~~  197 (218)
T 1nrj_B          118 ENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFANLEASVVA  197 (218)
T ss_dssp             TTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CTTC----CCCGGGSSSCEEE
T ss_pred             cCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhhcccccCCCCccccccCCceEE
Confidence            46889999999999987654333322222111111000                  011222223333334455556778


Q ss_pred             EEeecCCCCCHHHHHHHHHHH
Q psy7275          65 VGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus        65 v~VSA~TGeGideL~~~I~e~   85 (150)
                      +..|+.+| ++++++++|.+.
T Consensus       198 ~~~s~~~~-~i~~~~~~~~~~  217 (218)
T 1nrj_B          198 FEGSINKR-KISQWREWIDEK  217 (218)
T ss_dssp             EECBTTTT-BCHHHHHHHHHH
T ss_pred             EeccccCC-cHHHHHHHHHhh
Confidence            88898887 699999988764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=97.69  E-value=2.9e-05  Score=69.82  Aligned_cols=28  Identities=29%  Similarity=0.622  Sum_probs=24.2

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~~ey   89 (150)
                      .+++++||++|.|+++|++.|...+..+
T Consensus       192 vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          192 VSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeccCCCCchhHHHHHHhhcccc
Confidence            4899999999999999999998766543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.69  E-value=4.2e-05  Score=64.68  Aligned_cols=28  Identities=21%  Similarity=0.245  Sum_probs=23.8

Q ss_pred             CCcEEE--eecCC---CCCHHHHHHHHHHHHHH
Q psy7275          61 TLKVVG--FSSVS---GEGTEELLQLIKLAGED   88 (150)
Q Consensus        61 ~l~vv~--VSA~T---GeGideL~~~I~e~~~e   88 (150)
                      ..++++  +||++   |+|+++|++.|.+....
T Consensus       148 ~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          148 DWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             ceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence            468999  99999   99999999988776543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.67  E-value=4.9e-05  Score=56.74  Aligned_cols=65  Identities=11%  Similarity=0.047  Sum_probs=38.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh--hcCCcEEEeecCCCCCHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF--YSTLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef--y~~l~vv~VSA~TGeGideL~~~   81 (150)
                      .++|+|+|.||+|+.+.+...+   ..    ..+...      ....+   ...+  ..+.+++.+||++ .|+++++..
T Consensus       128 ~~~piilv~nK~Dl~~~~~~~~---~~----~~v~~~------~~~~~---~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~  190 (196)
T 3llu_A          128 PDMNFEVFIHKVDGLSDDHKIE---TQ----RDIHQR------ANDDL---ADAGLEKLHLSFYLTSIYD-HSIFEAFSK  190 (196)
T ss_dssp             TTCEEEEEEECGGGSCHHHHHH---HH----HHHHHH------HHHHH---HHTTCTTSCEEEEEECTTS-THHHHHHHH
T ss_pred             CCCcEEEEEeccccCchhhhhH---HH----hHHHHH------HHHHH---HHhhhhcCCcceEEEEech-hhHHHHHHH
Confidence            4789999999999976543211   00    111000      00000   0111  1245899999999 999999998


Q ss_pred             HHHH
Q psy7275          82 IKLA   85 (150)
Q Consensus        82 I~e~   85 (150)
                      |.+.
T Consensus       191 l~~~  194 (196)
T 3llu_A          191 VVQK  194 (196)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.67  E-value=3.6e-05  Score=58.60  Aligned_cols=26  Identities=15%  Similarity=0.287  Sum_probs=22.5

Q ss_pred             CCcEEEeecC-CCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSV-SGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~-TGeGideL~~~I~e~~   86 (150)
                      ..+++.+||+ +|.|+++++..|.+.+
T Consensus       176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          176 AATYIECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence            3689999999 6999999999988754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.66  E-value=7.2e-06  Score=73.10  Aligned_cols=65  Identities=15%  Similarity=0.177  Sum_probs=40.9

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|+||+|+.+.+.. ...       ..+..           +.+..+++....+++++||++|.|+++|++.|
T Consensus       102 ~~~vPiIVViNKiDl~~~~~~-~v~-------~~l~~-----------~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I  162 (537)
T 3izy_P          102 DAHVPIVLAINKCDKAEADPE-KVK-------KELLA-----------YDVVCEDYGGDVQAVHVSALTGENMMALAEAT  162 (537)
T ss_dssp             TTTCCEEECCBSGGGTTTSCC-SSS-------SHHHH-----------TTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred             HcCCcEEEEEecccccccchH-HHH-------HHHHh-----------hhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence            457899999999998754321 000       00100           00011122234689999999999999999998


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      ...+
T Consensus       163 ~~l~  166 (537)
T 3izy_P          163 IALA  166 (537)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.55  E-value=2.2e-05  Score=67.08  Aligned_cols=55  Identities=24%  Similarity=0.292  Sum_probs=37.7

Q ss_pred             CCCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc-CC-cEEEeecCCCCCHHHHH
Q psy7275           2 YDTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS-TL-KVVGFSSVSGEGTEELL   79 (150)
Q Consensus         2 yk~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~-~l-~vv~VSA~TGeGideL~   79 (150)
                      .+.+.|+|+|+||+|+......   ..                            +|+. ++ ++++|||.+|.|+++|+
T Consensus       108 ~~~~~pvilv~NK~D~~~~~~~---~~----------------------------~~~~lg~~~~~~iSA~~g~gv~~L~  156 (436)
T 2hjg_A          108 YRTKKPVVLAVNKLDNTEMRAN---IY----------------------------DFYSLGFGEPYPISGTHGLGLGDLL  156 (436)
T ss_dssp             TTCCSCEEEEEECCCC-----C---CC----------------------------SSGGGSSCCCEECBTTTTBTHHHHH
T ss_pred             HHcCCCEEEEEECccCccchhh---HH----------------------------HHHHcCCCCeEEEeCcCCCChHHHH
Confidence            3568899999999998643210   00                            1111 22 78999999999999999


Q ss_pred             HHHHHHHH
Q psy7275          80 QLIKLAGE   87 (150)
Q Consensus        80 ~~I~e~~~   87 (150)
                      +.|.+.+.
T Consensus       157 ~~i~~~l~  164 (436)
T 2hjg_A          157 DAVAEHFK  164 (436)
T ss_dssp             HHHHHTGG
T ss_pred             HHHHHhcC
Confidence            99977653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.54  E-value=0.00013  Score=53.81  Aligned_cols=24  Identities=8%  Similarity=-0.104  Sum_probs=20.9

Q ss_pred             EEEeecCCCC-CHHHHHHHHHHHHH
Q psy7275          64 VVGFSSVSGE-GTEELLQLIKLAGE   87 (150)
Q Consensus        64 vv~VSA~TGe-GideL~~~I~e~~~   87 (150)
                      ++.+||++|. |+++|++.|.+.+.
T Consensus       153 ~~~~Sa~~~~~~~~~l~~~i~~~~~  177 (184)
T 2zej_A          153 YHFVNATEESDALAKLRKTIINESL  177 (184)
T ss_dssp             EEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred             eEEEecccCchhHHHHHHHHHHHHh
Confidence            8999999997 99999999877654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=97.53  E-value=2.9e-05  Score=67.15  Aligned_cols=96  Identities=17%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.... +.       .+.+.                  +- .+++++.+||++|.|++++++.|.
T Consensus       139 ~~~piIvV~NK~Dl~~~~~~-~~-------~~~l~------------------~~-~g~~v~~vSAktg~gI~eL~~~L~  191 (423)
T 3qq5_A          139 MEIPFVVVVNKIDVLGEKAE-EL-------KGLYE------------------SR-YEAKVLLVSALQKKGFDDIGKTIS  191 (423)
T ss_dssp             TTCCEEEECCCCTTTTCCCT-HH-------HHHSS------------------CC-TTCCCCCCSSCCTTSTTTHHHHHH
T ss_pred             cCCCEEEEEeCcCCCCccHH-HH-------HHHHH------------------HH-cCCCEEEEECCCCCCHHHHHHHHH
Confidence            47899999999999766542 10       11111                  00 146899999999999999999999


Q ss_pred             HHHHH---HH-------------------------hhhHHHHHHHHHHHHHH------HHHHHHHhHhhCCCCCCCC
Q psy7275          84 LAGED---YE-------------------------KNYRVEWIRLRDEKAKS------EQLEKREQHFALPTPQPLW  126 (150)
Q Consensus        84 e~~~e---y~-------------------------~~y~pe~e~~~~~~~~~------~~~~~~~~~~~l~~~~~~~  126 (150)
                      +.+.+   ..                         +...|..+.++......      ...+-+..++++.++.++-
T Consensus       192 ~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkgr~ilp~~~~ird~l~~~~~~~~~~~~~l~~~l~~l~~~~~lv  268 (423)
T 3qq5_A          192 EILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMPQVHAIREALDREAIALVVKERELRYVMENIGMKPKLV  268 (423)
T ss_dssp             HHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTTCCCHHHHHHHHHHHHTTCEEEECCSTTHHHHHHHCSSCCSCC
T ss_pred             HhhhhhccCcchhhccccCceEEEEeeccccCcCCccccchHHHHHHHHHhhhHHHHhhHHHHHHHHHhcCCCccEE
Confidence            88822   11                         33566666666544321      2223566777776665553

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.49  E-value=9.3e-05  Score=63.20  Aligned_cols=25  Identities=16%  Similarity=0.101  Sum_probs=22.3

Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          63 KVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        63 ~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      ++++|||++|.|+++|++.|.+.+.
T Consensus       141 ~~~~iSA~~g~gv~~L~~~i~~~l~  165 (439)
T 1mky_A          141 EPIPVSAEHNINLDTMLETIIKKLE  165 (439)
T ss_dssp             SCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CEEEEeccCCCCHHHHHHHHHHhcc
Confidence            7899999999999999999977654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.48  E-value=4.8e-05  Score=60.71  Aligned_cols=58  Identities=16%  Similarity=0.259  Sum_probs=28.7

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+......       +.+.+..          .    +.  ..+++++.+||.+|+|++++++.|.+
T Consensus       144 ~~pvi~V~nK~D~~~~~e~~~-------~~~~i~~----------~----l~--~~~i~v~~~sa~~~~~~~~l~~~l~~  200 (274)
T 3t5d_A          144 KVNIIPLIAKADTLTPEECQQ-------FKKQIMK----------E----IQ--EHKIKIYEFPETDDEEENKLVKKIKD  200 (274)
T ss_dssp             TSCEEEEESSGGGSCHHHHHH-------HHHHHHH----------H----HH--HTTCCCCCC-----------CHHHHH
T ss_pred             cCCEEEEEeccCCCCHHHHHH-------HHHHHHH----------H----HH--HcCCeEEcCCCCCChhHHHHHHHHhc
Confidence            689999999999876543211       1111110          0    00  13578899999999999999988876


Q ss_pred             H
Q psy7275          85 A   85 (150)
Q Consensus        85 ~   85 (150)
                      .
T Consensus       201 ~  201 (274)
T 3t5d_A          201 R  201 (274)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.48  E-value=9.6e-05  Score=64.03  Aligned_cols=18  Identities=33%  Similarity=0.506  Sum_probs=15.7

Q ss_pred             CCcEEEeecCCCCCHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEEL   78 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL   78 (150)
                      ..++++|||++|+|++++
T Consensus       211 ~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          211 NINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             GEEEEECCSSSCTTSSSS
T ss_pred             cceEEEEeeecCCCcccc
Confidence            468999999999999864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.47  E-value=1.2e-05  Score=63.03  Aligned_cols=24  Identities=17%  Similarity=0.062  Sum_probs=22.4

Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHH
Q psy7275          65 VGFSSVSGEGTEELLQLIKLAGED   88 (150)
Q Consensus        65 v~VSA~TGeGideL~~~I~e~~~e   88 (150)
                      +++||++|.|+++++..|.+.+.+
T Consensus       185 ~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          185 RAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHHh
Confidence            789999999999999999998876

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=97.42  E-value=0.00016  Score=65.10  Aligned_cols=58  Identities=17%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+.+..        ...+.+.                 +.+ ....+++.+||++|.|+++|++.|
T Consensus       122 ~~ipiIvViNKiDl~~a~~~--------~v~~ei~-----------------~~lg~~~~~vi~vSAktg~GI~~Ll~~I  176 (599)
T 3cb4_D          122 MDLEVVPVLNKIDLPAADPE--------RVAEEIE-----------------DIVGIDATDAVRCSAKTGVGVQDVLERL  176 (599)
T ss_dssp             TTCEEEEEEECTTSTTCCHH--------HHHHHHH-----------------HHTCCCCTTCEEECTTTCTTHHHHHHHH
T ss_pred             CCCCEEEeeeccCcccccHH--------HHHHHHH-----------------HHhCCCcceEEEeecccCCCchhHHHHH
Confidence            57899999999999765421        1111111                 011 011368999999999999999998


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       177 ~~~l  180 (599)
T 3cb4_D          177 VRDI  180 (599)
T ss_dssp             HHHS
T ss_pred             hhcC
Confidence            7654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.40  E-value=2.5e-05  Score=65.08  Aligned_cols=26  Identities=4%  Similarity=0.139  Sum_probs=20.0

Q ss_pred             CCCCCEEEeeecCCCCCchh----hHHHhh
Q psy7275           3 DTGFPYTELVVGIDIVNHKY----AIEWMQ   28 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~----~~ewm~   28 (150)
                      ..++|.|+|+||+|+.+...    ..+|..
T Consensus       115 ~~~~~~vivlnK~DL~~~~~~~~~~~~~~~  144 (307)
T 1t9h_A          115 ANDIQPIICITKMDLIEDQDTEDTIQAYAE  144 (307)
T ss_dssp             TTTCEEEEEEECGGGCCCHHHHHHHHHHHH
T ss_pred             HCCCCEEEEEECCccCchhhhHHHHHHHHH
Confidence            46889999999999987643    355653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.38  E-value=0.00033  Score=60.39  Aligned_cols=58  Identities=17%  Similarity=0.253  Sum_probs=41.4

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|.|+|+||+|+.....    +   +.+.+.+.                    -....++.|||++|+|+++|+..|.+
T Consensus       269 ~~P~ILVlNKlDl~~~~~----~---~~l~~~l~--------------------~~g~~vi~iSA~~g~gi~eL~~~i~~  321 (416)
T 1udx_A          269 RRPSLVALNKVDLLEEEA----V---KALADALA--------------------REGLAVLPVSALTGAGLPALKEALHA  321 (416)
T ss_dssp             HSCEEEEEECCTTSCHHH----H---HHHHHHHH--------------------TTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             cCCEEEEEECCChhhHHH----H---HHHHHHHH--------------------hcCCeEEEEECCCccCHHHHHHHHHH
Confidence            469999999999875421    1   11111111                    02468999999999999999999998


Q ss_pred             HHHHH
Q psy7275          85 AGEDY   89 (150)
Q Consensus        85 ~~~ey   89 (150)
                      .+.+.
T Consensus       322 ~l~~~  326 (416)
T 1udx_A          322 LVRST  326 (416)
T ss_dssp             HHHTS
T ss_pred             HHHhc
Confidence            88653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=97.37  E-value=0.00062  Score=60.23  Aligned_cols=24  Identities=21%  Similarity=0.152  Sum_probs=21.7

Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          63 KVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        63 ~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      +++.+||++|.|+++|+++|.+.+
T Consensus       252 PV~~gSA~~~~GV~~Lld~i~~~~  275 (528)
T 3tr5_A          252 PIFFGSAINNFGVGELLDAFVKEA  275 (528)
T ss_dssp             EEEECBGGGTBSHHHHHHHHHHHS
T ss_pred             EEEeccccCCccHHHHHHHHHHhC
Confidence            788899999999999999997765

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=97.35  E-value=0.00017  Score=65.07  Aligned_cols=58  Identities=17%  Similarity=0.163  Sum_probs=38.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+.+..        ...+.+..                 .+. ...+++.+||++|.|+++|++.|
T Consensus       124 ~~ipiIvviNKiDl~~a~~~--------~v~~el~~-----------------~lg~~~~~vi~vSAktg~GI~~Lle~I  178 (600)
T 2ywe_A          124 QDLVIIPVINKIDLPSADVD--------RVKKQIEE-----------------VLGLDPEEAILASAKEGIGIEEILEAI  178 (600)
T ss_dssp             TTCEEEEEEECTTSTTCCHH--------HHHHHHHH-----------------TSCCCGGGCEECBTTTTBSHHHHHHHH
T ss_pred             CCCCEEEEEeccCccccCHH--------HHHHHHHH-----------------hhCCCcccEEEEEeecCCCchHHHHHH
Confidence            57899999999999765421        11111110                 010 01258999999999999999988


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       179 ~~~l  182 (600)
T 2ywe_A          179 VNRI  182 (600)
T ss_dssp             HHHS
T ss_pred             HHhc
Confidence            7654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.32  E-value=4.2e-05  Score=60.64  Aligned_cols=60  Identities=15%  Similarity=0.209  Sum_probs=38.8

Q ss_pred             CCCCEEEeeecCCCCCchh-hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKY-AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~-~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+|+|+||+|+.+... ..++          +.... +      .+     . ....+++.+||++|.|++++++.|
T Consensus       191 ~~~~~i~V~NK~Dl~~~~~~~~~~----------~~~~~-~------~~-----~-~~~~~v~~~SA~~~~gi~~l~~~l  247 (299)
T 2aka_B          191 QGQRTIGVITKLDLMDEGTDARDV----------LENKL-L------PL-----R-RGYIGVVNRSQKDIDGKKDITAAL  247 (299)
T ss_dssp             TCSSEEEEEECGGGSCTTCCCHHH----------HTTCS-S------CC-----T-TCEEECCCCCCBCTTSCBCHHHHH
T ss_pred             CCCeEEEEEEccccCCCCchHHHH----------HhCCc-C------cC-----C-CCcEEEECCChhhccccccHHHHH
Confidence            4689999999999976532 1111          11000 0      00     0 011367899999999999999999


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+..
T Consensus       248 ~~~~  251 (299)
T 2aka_B          248 AAER  251 (299)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8744

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=97.29  E-value=2.9e-05  Score=68.68  Aligned_cols=62  Identities=24%  Similarity=0.237  Sum_probs=38.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.+.. ...       ..+.. ..+          ..+++....+++++||++|.|+++|++.|.
T Consensus       102 ~~vPiIVviNKiDl~~~~~~-~v~-------~~l~~-~~~----------~~~~~~~~~~~v~vSAktG~gI~eLle~I~  162 (501)
T 1zo1_I          102 AQVPVVVAVNKIDKPEADPD-RVK-------NELSQ-YGI----------LPEEWGGESQFVHVSAKAGTGIDELLDAIL  162 (501)
T ss_dssp             TTCCEEEEEECSSSSTTCCC-CTT-------CCCCC-CCC----------CTTCCSSSCEEEECCTTTCTTCTTHHHHTT
T ss_pred             cCceEEEEEEeccccccCHH-HHH-------HHHHH-hhh----------hHHHhCCCccEEEEeeeeccCcchhhhhhh
Confidence            57899999999999753220 000       00000 000          001222346899999999999999999875


Q ss_pred             H
Q psy7275          84 L   84 (150)
Q Consensus        84 e   84 (150)
                      .
T Consensus       163 ~  163 (501)
T 1zo1_I          163 L  163 (501)
T ss_dssp             T
T ss_pred             h
Confidence            3

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.26  E-value=0.00011  Score=62.09  Aligned_cols=16  Identities=25%  Similarity=0.582  Sum_probs=13.7

Q ss_pred             CCCC-EEEeeecCCCCC
Q psy7275           4 TGFP-YTELVVGIDIVN   19 (150)
Q Consensus         4 ~~lP-~IlV~NKiDl~~   19 (150)
                      .++| +|+|+||+|+.+
T Consensus       126 ~~ip~iivviNK~Dl~~  142 (405)
T 2c78_A          126 VGVPYIVVFMNKVDMVD  142 (405)
T ss_dssp             TTCCCEEEEEECGGGCC
T ss_pred             cCCCEEEEEEECccccC
Confidence            4688 889999999975

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.26  E-value=8e-05  Score=66.65  Aligned_cols=15  Identities=27%  Similarity=0.375  Sum_probs=13.9

Q ss_pred             CcEEEeecCCCCCHH
Q psy7275          62 LKVVGFSSVSGEGTE   76 (150)
Q Consensus        62 l~vv~VSA~TGeGid   76 (150)
                      +++++|||++|.|++
T Consensus       357 ~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          357 VHFVPISAISGTNLI  371 (592)
T ss_dssp             EEEEEECSSSCSSSC
T ss_pred             eEEEEEecccCcccc
Confidence            479999999999998

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.22  E-value=0.00055  Score=50.98  Aligned_cols=63  Identities=19%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|.++|.||+|+.+......   ..+.....                  +.++...+..+++||++|.|++++++.|.
T Consensus       136 ~~~~~~~v~nK~D~~s~~~~~~---~~~~~~~~------------------~~~~~~~~~~~~~Sal~~~~~~~l~~~l~  194 (210)
T 1pui_A          136 SNIAVLVLLTKADKLASGARKA---QLNMVREA------------------VLAFNGDVQVETFSSLKKQGVDKLRQKLD  194 (210)
T ss_dssp             TTCCEEEEEECGGGSCHHHHHH---HHHHHHHH------------------HGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             cCCCeEEEEecccCCCchhHHH---HHHHHHHH------------------HHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence            4789999999999876432110   01111111                  11222235788999999999999999988


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +...
T Consensus       195 ~~~~  198 (210)
T 1pui_A          195 TWFS  198 (210)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            7653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.17  E-value=0.0003  Score=60.90  Aligned_cols=19  Identities=16%  Similarity=0.350  Sum_probs=16.6

Q ss_pred             CCcEEEeecCCCCCHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~   79 (150)
                      ..+++++||++|.|+++++
T Consensus       225 ~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          225 DVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HEEEEECBTTTTBTTSSCC
T ss_pred             CceEEeccccccccccccc
Confidence            4689999999999998865

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.15  E-value=0.0002  Score=61.37  Aligned_cols=53  Identities=23%  Similarity=0.182  Sum_probs=33.8

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc--CCcEEEeecCCCCCHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS--TLKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~--~l~vv~VSA~TGeGideL~~   80 (150)
                      +.+.|+|+|+||+|+.+....  +.                             +||.  .-.+++|||.+|.|+++|++
T Consensus       129 ~~~~pvilV~NK~D~~~~~~~--~~-----------------------------e~~~lg~~~~~~iSA~~g~gv~~L~~  177 (456)
T 4dcu_A          129 RTKKPVVLAVNKLDNTEMRAN--IY-----------------------------DFYSLGFGEPYPISGTHGLGLGDLLD  177 (456)
T ss_dssp             TCCSCEEEEEECC-----------C-----------------------------CSGGGSSSSEEECCTTTCTTHHHHHH
T ss_pred             HcCCCEEEEEECccchhhhhh--HH-----------------------------HHHHcCCCceEEeecccccchHHHHH
Confidence            567899999999998543210  00                             1111  12678999999999999999


Q ss_pred             HHHHHH
Q psy7275          81 LIKLAG   86 (150)
Q Consensus        81 ~I~e~~   86 (150)
                      .+.+.+
T Consensus       178 ~i~~~l  183 (456)
T 4dcu_A          178 AVAEHF  183 (456)
T ss_dssp             HHHTTG
T ss_pred             HHHhhc
Confidence            987643

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.15  E-value=0.00017  Score=61.54  Aligned_cols=20  Identities=15%  Similarity=0.253  Sum_probs=17.0

Q ss_pred             CcEEEeecCCCCCHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~   81 (150)
                      .+++++||++|.|+++++..
T Consensus       198 ~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          198 MAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             EEEEECCTTTCTTTSSCCTT
T ss_pred             ceEEEEeccCCCCccccccc
Confidence            58999999999999986543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.11  E-value=0.00036  Score=56.84  Aligned_cols=64  Identities=19%  Similarity=0.055  Sum_probs=36.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.+.+...+..+.   ..+.+.       .+       ..++. ...+++.+||++ .|+.+.+..+
T Consensus       114 ~~~piilv~NK~Dl~~~~~r~~~~~v---~~~~~~-------~~-------~~~~g~~~~~~~~tSa~~-~~i~e~~~~i  175 (307)
T 3r7w_A          114 PDAKIFVLLHKMDLVQLDKREELFQI---MMKNLS-------ET-------SSEFGFPNLIGFPTSIWD-ESLYKAWSQI  175 (307)
T ss_dssp             TTCEEEEEEECGGGSCHHHHHHHHHH---HHHHHH-------HH-------HHTTTCCSCEEEECCTTS-SHHHHHHHHH
T ss_pred             CCCeEEEEEecccccchhhhhHHHHH---HHHHHH-------HH-------HHHcCCCCeEEEEeeecC-ChHHHHHHHH
Confidence            37899999999999764332111000   000000       01       11111 137999999999 7777777666


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      ...
T Consensus       176 v~~  178 (307)
T 3r7w_A          176 VCS  178 (307)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            553

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.11  E-value=0.00028  Score=59.55  Aligned_cols=24  Identities=13%  Similarity=0.151  Sum_probs=18.5

Q ss_pred             CCcEEEeecCCCCC----------HHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEG----------TEELLQLIKL   84 (150)
Q Consensus        61 ~l~vv~VSA~TGeG----------ideL~~~I~e   84 (150)
                      ..+++++||++|.|          +++|+++|.+
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~  191 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHH
Confidence            46999999999874          6677766654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.10  E-value=0.0026  Score=57.80  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=23.0

Q ss_pred             CcEEEeecC--------------CCCCHHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSV--------------SGEGTEELLQLIKLAGE   87 (150)
Q Consensus        62 l~vv~VSA~--------------TGeGideL~~~I~e~~~   87 (150)
                      .++++|||+              +|.|+++|+..|.+.+.
T Consensus       285 ~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          285 ERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             GTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence            479999999              99999999999987663

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.06  E-value=0.00024  Score=61.36  Aligned_cols=19  Identities=26%  Similarity=0.265  Sum_probs=16.1

Q ss_pred             CCcEEEeecCCCCCHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~   79 (150)
                      ..+++++||++|.|++++.
T Consensus       185 ~~~~i~vSA~~g~nv~~~~  203 (458)
T 1f60_A          185 TVPFVPISGWNGDNMIEAT  203 (458)
T ss_dssp             GCCEEECCTTTCBTTTBCC
T ss_pred             CceEEEeecccCcCccccc
Confidence            3789999999999997653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.04  E-value=0.0016  Score=48.42  Aligned_cols=60  Identities=12%  Similarity=0.082  Sum_probs=39.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+++|+||+|+.+....     ..+. ..++          .       .+  ..+.++.+||++|.|++++++.|.
T Consensus       109 ~~~~i~~v~nK~Dl~~~~~~-----~~~~-a~~l----------~-------~~--~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A          109 SNIVIMLVGNKSDLRHLRAV-----PTDE-ARAF----------A-------EK--NNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             TTCEEEEEEECTTCGGGCCS-----CHHH-HHHH----------H-------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCeEEEEEECcccccccCc-----CHHH-HHHH----------H-------HH--cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            36799999999998542211     0000 0111          0       11  246788899999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       164 ~~~~~  168 (199)
T 2f9l_A          164 TEIYR  168 (199)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87643

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.00042  Score=62.25  Aligned_cols=19  Identities=32%  Similarity=0.431  Sum_probs=16.6

Q ss_pred             CCcEEEeecCCCCCHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELL   79 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~   79 (150)
                      ..++++|||++|.|++++.
T Consensus       345 ~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          345 NINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             GCEEEECCTTTCTTTSSCT
T ss_pred             CccEEeeecccCCCccccC
Confidence            4689999999999998763

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.91  E-value=0.00041  Score=58.14  Aligned_cols=59  Identities=8%  Similarity=0.076  Sum_probs=27.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+......       +.+.+..       +       + + ..+++++.+||++|.| ++.+..+.
T Consensus       173 ~~~piIlV~NK~Dl~~~~ev~~-------~k~~i~~-------~-------~-~-~~~i~~~~~Sa~~~~~-~e~~~~l~  228 (361)
T 2qag_A          173 NKVNIVPVIAKADTLTLKERER-------LKKRILD-------E-------I-E-EHNIKIYHLPDAESDE-DEDFKEQT  228 (361)
T ss_dssp             S-SCEEEEEECCSSSCHHHHHH-------HHHHHHH-------H-------T-T-CC-CCSCCCC----------CHHHH
T ss_pred             cCCCEEEEEECCCCCCHHHHHH-------HHHHHHH-------H-------H-H-HCCCCEEeCCCcCCCc-chhHHHHH
Confidence            4689999999999976543211       1111110       0       0 0 1246889999999998 65555444


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      ..+
T Consensus       229 ~~i  231 (361)
T 2qag_A          229 RLL  231 (361)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.88  E-value=0.00042  Score=58.55  Aligned_cols=26  Identities=12%  Similarity=-0.038  Sum_probs=23.1

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+.++.+||++|+|++++|..|.+.+
T Consensus       326 ~~~~~~tSA~d~~nV~~vF~~v~~~i  351 (362)
T 1zcb_A          326 PLYHHFTTAINTENIRLVFRDVKDTI  351 (362)
T ss_dssp             CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEecCCchhHHHHHHHHHHHH
Confidence            46788999999999999999998766

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.87  E-value=0.00075  Score=52.16  Aligned_cols=63  Identities=13%  Similarity=0.146  Sum_probs=35.7

Q ss_pred             CCEEEeeecCCCCCchhhHHHhhcHH-HHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCC-----CCHHHHH
Q psy7275           6 FPYTELVVGIDIVNHKYAIEWMQDFE-VFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSG-----EGTEELL   79 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~~~~ewm~D~e-~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TG-----eGideL~   79 (150)
                      .|+|+|+||+|+.+.....+++.... .+++                  .+.++  +.+++.+++.++     .|+.+|+
T Consensus       146 ~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~------------------l~~~~--~~~~~~~~~~~~~~~~~~~v~~ll  205 (239)
T 3lxx_A          146 SFMILIFTRKDDLGDTNLHDYLREAPEDIQD------------------LMDIF--GDRYCALNNKATGAEQEAQRAQLL  205 (239)
T ss_dssp             GGEEEEEECGGGC------------CHHHHH------------------HHHHH--SSSEEECCTTCCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCccCCcccHHHHHHhchHHHHH------------------HHHHc--CCEEEEEECCCCccccHHHHHHHH
Confidence            49999999999876554444432211 1111                  12233  346777877754     7899999


Q ss_pred             HHHHHHHHH
Q psy7275          80 QLIKLAGED   88 (150)
Q Consensus        80 ~~I~e~~~e   88 (150)
                      ..|.+.+.+
T Consensus       206 ~~i~~~~~~  214 (239)
T 3lxx_A          206 GLIQRVVRE  214 (239)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888865

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=96.81  E-value=0.00031  Score=59.28  Aligned_cols=25  Identities=8%  Similarity=0.139  Sum_probs=21.7

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      +.++.+||++|+|++++|..|.+.+
T Consensus       319 ~~~~eTSA~d~~nV~~vF~~v~~~I  343 (354)
T 2xtz_A          319 FKIYRTTALDQKLVKKTFKLVDETL  343 (354)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeecchhHHHHHHHHHHHH
Confidence            3568999999999999999988765

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=96.80  E-value=0.00075  Score=57.65  Aligned_cols=19  Identities=16%  Similarity=0.246  Sum_probs=16.3

Q ss_pred             CcEEEeecCCCCCHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~   80 (150)
                      .+++++||++|.|++++++
T Consensus       187 ~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          187 VRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CEEEECBTTTTBTTTBCCS
T ss_pred             ceEEEeecccCcccccccc
Confidence            6899999999999986643

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=96.71  E-value=0.0006  Score=57.45  Aligned_cols=26  Identities=0%  Similarity=-0.132  Sum_probs=23.0

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+.++.+||++|+|++++|..|.+.+
T Consensus       317 ~~~~~etSA~~~~nV~~vF~~v~~~i  342 (353)
T 1cip_A          317 EIYTHFTCATDTKNVQFVFDAVTDVI  342 (353)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEECcCchhHHHHHHHHHHHH
Confidence            46788999999999999999998765

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.66  E-value=0.0022  Score=57.94  Aligned_cols=25  Identities=32%  Similarity=0.099  Sum_probs=22.4

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      ++++.+||++|.|+++|++.|.+.+
T Consensus       248 ~pv~~~SA~~~~Gv~~Ll~~i~~~l  272 (665)
T 2dy1_A          248 YPVALASGEREIGVLPLLELILEAL  272 (665)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             eEEEEeecccCcCHHHHHHHHHHhC
Confidence            4899999999999999999998755

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=96.66  E-value=0.0066  Score=53.61  Aligned_cols=25  Identities=12%  Similarity=0.012  Sum_probs=22.2

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+++..||++|.|+++|+++|.+.+
T Consensus       252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~  276 (529)
T 2h5e_A          252 TPVFFGTALGNFGVDHMLDGLVEWA  276 (529)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             eEEEeeecccCCCHHHHHHHHHHhC
Confidence            3789999999999999999988765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.57  E-value=0.0035  Score=46.63  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=21.9

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      .+.++.+||++|.|++++++.|.+.
T Consensus       165 ~~~~ld~Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          165 GLSFIETSALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            4678889999999999999998764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=96.57  E-value=0.0025  Score=61.99  Aligned_cols=17  Identities=24%  Similarity=0.466  Sum_probs=13.9

Q ss_pred             CCCC-EEEeeecCCCCCc
Q psy7275           4 TGFP-YTELVVGIDIVNH   20 (150)
Q Consensus         4 ~~lP-~IlV~NKiDl~~~   20 (150)
                      .++| +|+|+||+|+.+.
T Consensus       410 lgIP~IIVVINKiDLv~d  427 (1289)
T 3avx_A          410 VGVPYIIVFLNKCDMVDD  427 (1289)
T ss_dssp             HTCSCEEEEEECCTTCCC
T ss_pred             cCCCeEEEEEeecccccc
Confidence            4678 7899999999763

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.45  E-value=0.0016  Score=53.83  Aligned_cols=59  Identities=15%  Similarity=0.218  Sum_probs=37.2

Q ss_pred             CCCCEEEeeecCCCCCchh-hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKY-AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~-~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|+|+|+||+|+.+... ..++          +.... +      .+     . .....++.+||++|.|++++++++
T Consensus       196 ~~~~~i~V~NK~Dl~~~~~~~~~~----------~~~~~-~------~l-----~-~~~~~v~~~SA~~~~~i~~l~~~l  252 (353)
T 2x2e_A          196 QGQRTIGVITKLDLMDEGTDARDV----------LENKL-L------PL-----R-RGYIGVVNRSQKDIDGKKDITAAL  252 (353)
T ss_dssp             TCTTEEEEEECGGGSCTTCCCHHH----------HTTCS-S------CC-----T-TCEEECCCCCHHHHHTTCCHHHHH
T ss_pred             CCCceEEEeccccccCcchhHHHH----------HhCCc-c------cc-----c-CCceEEEeCCcccccccccHHHHH
Confidence            4689999999999976432 1111          11000 0      00     0 001367889999999999999988


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       253 ~~e  255 (353)
T 2x2e_A          253 AAE  255 (353)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.43  E-value=0.026  Score=44.79  Aligned_cols=62  Identities=15%  Similarity=0.133  Sum_probs=37.7

Q ss_pred             CCCCCEEEeeecCCCCCchh-hHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCC---CCCHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKY-AIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVS---GEGTEE   77 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~-~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~T---GeGide   77 (150)
                      +.+.|+|+|+||+|+.+... ..+++          ....              ..+ ....+++.+||.+   |.|+++
T Consensus       196 ~~~~~~i~v~NK~Dl~~~~~~~~~~~----------~~~~--------------~~~~~~~~~v~~~sa~~~~~~~gv~~  251 (315)
T 1jwy_B          196 PEGKRTIGVITKLDLMDKGTDAMEVL----------TGRV--------------IPLTLGFIGVINRSQEDIIAKKSIRE  251 (315)
T ss_dssp             SSCSSEEEEEECTTSSCSSCCCHHHH----------TTSS--------------SCCTTCEEECCCCCHHHHSSSCCHHH
T ss_pred             CCCCcEEEEEcCcccCCcchHHHHHH----------hCCC--------------ccCCCCeEEEecCChhhhccCCCHHH
Confidence            35789999999999986543 12211          1000              000 0112455556666   899999


Q ss_pred             HHHHHHHHHHH
Q psy7275          78 LLQLIKLAGED   88 (150)
Q Consensus        78 L~~~I~e~~~e   88 (150)
                      ++..+.+...+
T Consensus       252 l~~~~~~~~~~  262 (315)
T 1jwy_B          252 SLKSEILYFKN  262 (315)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99998877754

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.35  E-value=0.0018  Score=52.83  Aligned_cols=58  Identities=9%  Similarity=0.086  Sum_probs=28.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||.|+.+.....       .+.+.+..              .+.+ + +++++.+||++| |+++++..+.+
T Consensus       155 ~~~iilV~~K~Dl~~~~e~~-------~~~~~~~~--------------~~~~-~-~~~~~e~Sa~~~-~v~e~f~~l~~  210 (301)
T 2qnr_A          155 KVNIVPVIAKADTLTLKERE-------RLKKRILD--------------EIEE-H-NIKIYHLPDAES-DEDEDFKEQTR  210 (301)
T ss_dssp             TSCEEEEECCGGGSCHHHHH-------HHHHHHHH--------------HHHH-T-TCCCCCCC----------CHHHHH
T ss_pred             cCCEEEEEEeCCCCCHHHHH-------HHHHHHHH--------------HHHH-c-CCeEEecCCccc-cccHHHHHHHH
Confidence            56999999999987643321       11111110              0111 2 478899999999 99999887765


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       211 ~i  212 (301)
T 2qnr_A          211 LL  212 (301)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=96.29  E-value=0.0034  Score=57.07  Aligned_cols=25  Identities=20%  Similarity=0.040  Sum_probs=22.4

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      ++++..||.+|.|+++|++.|...+
T Consensus       256 ~Pv~~gSA~~~~Gv~~LLd~i~~~l  280 (691)
T 1dar_A          256 TPVFLGSALKNKGVQLLLDAVVDYL  280 (691)
T ss_dssp             EEEEECBGGGTBSHHHHHHHHHHHS
T ss_pred             eEEEEeecccCcCHHHHHHHHHHhC
Confidence            4789999999999999999998765

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=96.24  E-value=0.004  Score=57.82  Aligned_cols=57  Identities=14%  Similarity=0.250  Sum_probs=38.8

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh----cCCcEEEeecCCCCCHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY----STLKVVGFSSVSGEGTEEL   78 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy----~~l~vv~VSA~TGeGideL   78 (150)
                      ..+.|+|+|+||+|+.+......         ..+..                 +++    ...+++++||.+|.|+++|
T Consensus       215 ~~g~pvIlVlNKiDlv~~~~~~~---------~il~~-----------------~~~~l~lg~~~VV~iSA~~G~GvdeL  268 (772)
T 3zvr_A          215 PQGQRTIGVITKLDLMDEGTDAR---------DVLEN-----------------KLLPLRRGYIGVVNRSQKDIDGKKDI  268 (772)
T ss_dssp             TTCSSEEEEEECTTSSCTTCCSH---------HHHTT-----------------CSSCCSSCEEECCCCCCEESSSSEEH
T ss_pred             hcCCCEEEEEeCcccCCcchhhH---------HHHHH-----------------HhhhhhccCCceEEecccccccchhH
Confidence            35689999999999986543100         11110                 111    1237889999999999999


Q ss_pred             HHHHHHH
Q psy7275          79 LQLIKLA   85 (150)
Q Consensus        79 ~~~I~e~   85 (150)
                      .++|.+.
T Consensus       269 ~eaI~~e  275 (772)
T 3zvr_A          269 TAALAAE  275 (772)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998863

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=96.18  E-value=0.017  Score=52.57  Aligned_cols=25  Identities=16%  Similarity=0.098  Sum_probs=22.4

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      ++++..||++|.|++.|++.|...+
T Consensus       262 ~Pv~~gSa~~~~Gv~~LLd~i~~~l  286 (704)
T 2rdo_7          262 ILVTCGSAFKNKGVQAMLDAVIDYL  286 (704)
T ss_pred             eEEEEeecccCccHHHHHHHHHHHC
Confidence            4788999999999999999998765

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=96.08  E-value=0.016  Score=52.71  Aligned_cols=25  Identities=12%  Similarity=0.058  Sum_probs=22.5

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+++..||.+|.|++.|++.|.+.+
T Consensus       254 ~Pv~~gSA~~~~Gv~~LLd~i~~~l  278 (693)
T 2xex_A          254 YPVLCGTAFKNKGVQLMLDAVIDYL  278 (693)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             eeEEEeecccCcCHHHHHHHHHHHC
Confidence            4789999999999999999998766

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=96.00  E-value=0.021  Score=50.59  Aligned_cols=25  Identities=20%  Similarity=0.146  Sum_probs=21.6

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+++..||.+|.|++.|+++|...+
T Consensus       269 ~PV~~gSA~~~~Gv~~LLd~iv~~~  293 (548)
T 3vqt_A          269 TPVFFGSAINNFGVREMLDMFVEFA  293 (548)
T ss_dssp             EEEEECBGGGTBSHHHHHHHHHHHS
T ss_pred             ceeeecccccCcCHHHHHHHHHHhC
Confidence            3788889999999999999987654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=95.97  E-value=0.0024  Score=54.94  Aligned_cols=25  Identities=8%  Similarity=-0.181  Sum_probs=21.8

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      +.+..+||++|+|++++|..|.+.+
T Consensus       359 ~~~~~TSA~d~~nV~~vF~~v~~~I  383 (402)
T 1azs_C          359 CYPHFTCAVDTENIRRVFNDCRDII  383 (402)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEeecCcCHHHHHHHHHHHH
Confidence            4567899999999999999988765

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=95.71  E-value=0.014  Score=47.07  Aligned_cols=60  Identities=15%  Similarity=0.019  Sum_probs=38.9

Q ss_pred             CCCCEEEeeecC-CCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGI-DIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKi-Dl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|++|..||. |+.++-...+       +.+.+.                |+.....-.+.++||+||+|+.+=++.+
T Consensus       161 ~gapLLVlANKqqDlp~Ams~~E-------I~e~L~----------------L~~l~R~W~Iq~csA~TGeGL~EGLdWL  217 (227)
T 3l82_B          161 SGRPLLVLSCISQGDVKRMPCFY-------LAHELH----------------LNLLNHPWLVQDTEAETLTGFLNGIEWI  217 (227)
T ss_dssp             SCSCEEEEEEESSTTSCBCCHHH-------HHHHTT----------------GGGGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred             CCCeEEEEeCCCcCccCCCCHHH-------HHHHcC----------------CcCCCCCEEEEEeECCCCcCHHHHHHHH
Confidence            367999999996 7754322211       222221                2222234589999999999999999888


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       218 ~~~l  221 (227)
T 3l82_B          218 LEEV  221 (227)
T ss_dssp             TTTT
T ss_pred             HHHH
Confidence            6543

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=95.66  E-value=0.011  Score=53.11  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=21.1

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      .+++..||.+|.|++.|+++|.+.
T Consensus       213 ~Pv~~gSa~~~~Gv~~LLd~i~~~  236 (638)
T 3j25_A          213 FPLYHGSAKSNIGIDNLIEVITNK  236 (638)
T ss_dssp             CCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred             ccccccccccCCCchhHhhhhhcc
Confidence            588889999999999999988653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=95.09  E-value=0.028  Score=47.24  Aligned_cols=60  Identities=15%  Similarity=0.019  Sum_probs=39.3

Q ss_pred             CCCCEEEeeec-CCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVG-IDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NK-iDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .+.|++|..|| -|+.++-...+       +.+.+.                |+.....-.+.++||+||+|+.+=++.+
T Consensus       246 ~~apLLVfANKkQDlp~Ams~~E-------I~e~L~----------------L~~l~r~W~Iq~csA~tGeGL~EGldWL  302 (312)
T 3l2o_B          246 SGRPLLVLSCISQGDVKRMPCFY-------LAHELH----------------LNLLNHPWLVQDTEAETLTGFLNGIEWI  302 (312)
T ss_dssp             TTCCEEEEEEESSTTSCBCCHHH-------HHHHTT----------------GGGGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred             CCCeEEEEeCCcccccCCCCHHH-------HHHHcC----------------CccCCCcEEEEecccCCCcCHHHHHHHH
Confidence            36799999997 48855432211       222221                2222234589999999999999999888


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       303 ~~~l  306 (312)
T 3l2o_B          303 LEEV  306 (312)
T ss_dssp             HHHS
T ss_pred             HHHH
Confidence            7654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=94.87  E-value=0.0038  Score=53.17  Aligned_cols=63  Identities=8%  Similarity=-0.096  Sum_probs=36.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH-HH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ-LI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~-~I   82 (150)
                      +.+|+|+|+||+|+..    .+|+..+   .+..                  ..  .+.++++|||.++.|+++|++ .+
T Consensus       213 ~~kP~i~v~NK~D~~~----~~~l~~l---~~~~------------------~~--~~~~vv~iSA~~e~~l~~L~~~~l  265 (397)
T 1wxq_A          213 VNKPMVIAANKADAAS----DEQIKRL---VREE------------------EK--RGYIVIPTSAAAELTLRKAAKAGF  265 (397)
T ss_dssp             HHSCEEEEEECGGGSC----HHHHHHH---HHHH------------------HH--TTCEEEEECHHHHHHHHSCSSSCC
T ss_pred             cCCCEEEEEeCccccc----hHHHHHH---HHHH------------------hh--cCCcEEEEeccchhhHHHHHhhhh
Confidence            3579999999999862    2343211   1111                  00  135899999999999988766 44


Q ss_pred             HHHHHHHHhhh
Q psy7275          83 KLAGEDYEKNY   93 (150)
Q Consensus        83 ~e~~~ey~~~y   93 (150)
                      .+...+....|
T Consensus       266 ~~~~p~~~~~~  276 (397)
T 1wxq_A          266 IEYIPGASEFK  276 (397)
T ss_dssp             CCSCC------
T ss_pred             hhhcCCCcccc
Confidence            44443333334

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.81  E-value=0.017  Score=49.76  Aligned_cols=58  Identities=17%  Similarity=0.296  Sum_probs=24.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.+......       |.+.+..              .+..  .+++++.+||.++.+.++++..+.
T Consensus       166 ~~v~iIlVinK~Dll~~~ev~~-------~k~~i~~--------------~~~~--~~i~~~~~sa~~~~~v~~~~~~l~  222 (418)
T 2qag_C          166 EKVNIIPLIAKADTLTPEECQQ-------FKKQIMK--------------EIQE--HKIKIYEFPETDDEEENKLVKKIK  222 (418)
T ss_dssp             TTSEEEEEEESTTSSCHHHHHH-------HHHHHHH--------------HHHH--HTCCCCCCC---------------
T ss_pred             ccCcEEEEEEcccCccHHHHHH-------HHHHHHH--------------HHHH--cCCeEEeCCCCCCcCHHHHHHHHH
Confidence            3689999999999986543221       1111110              0111  157788889999999888777666


Q ss_pred             H
Q psy7275          84 L   84 (150)
Q Consensus        84 e   84 (150)
                      .
T Consensus       223 ~  223 (418)
T 2qag_C          223 D  223 (418)
T ss_dssp             -
T ss_pred             h
Confidence            5

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=94.56  E-value=0.015  Score=48.55  Aligned_cols=26  Identities=8%  Similarity=-0.113  Sum_probs=22.6

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+.+..+||+++.+++.+|.+|.+.+
T Consensus       291 ~i~~~~TsA~d~~nV~~vF~~v~~~I  316 (327)
T 3ohm_A          291 IIYSHFTCATDTENIRFVFAAVKDTI  316 (327)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEeecCHHHHHHHHHHHHHH
Confidence            35678899999999999999998765

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=94.50  E-value=0.084  Score=47.86  Aligned_cols=25  Identities=20%  Similarity=0.041  Sum_probs=21.4

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      .+++..||.++.|+..|++.|.+.+
T Consensus       265 ~pv~~gsa~~~~gv~~lLd~i~~~l  289 (709)
T 4fn5_A          265 VPAVCGSSFKNKGVPLVLDAVIDYL  289 (709)
T ss_dssp             EEEEECBTTTTBTHHHHHHHHHHHS
T ss_pred             eeeeeeecccCCchHHHHHHHHhhC
Confidence            4788899999999999998887654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=93.71  E-value=0.01  Score=48.92  Aligned_cols=18  Identities=17%  Similarity=0.281  Sum_probs=15.0

Q ss_pred             CCCCEEEeeecCCCCCch
Q psy7275           4 TGFPYTELVVGIDIVNHK   21 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~   21 (150)
                      .+.|+|+|+||+|+.+..
T Consensus       202 ~~~~~i~V~nK~Dl~~~~  219 (360)
T 3t34_A          202 SGDRTFGVLTKIDLMDKG  219 (360)
T ss_dssp             TCTTEEEEEECGGGCCTT
T ss_pred             cCCCEEEEEeCCccCCCc
Confidence            467999999999998643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=92.97  E-value=0.11  Score=44.25  Aligned_cols=50  Identities=24%  Similarity=0.141  Sum_probs=36.2

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..|.|+|.||+|..+.+..           +                     .......++++|+.++.|++.|..++.+
T Consensus       249 ~~p~i~v~nKid~~~~eel-----------e---------------------~l~~~~~~~~is~~~e~gLd~Li~~~y~  296 (376)
T 4a9a_A          249 YMPAIYVLNKIDSLSIEEL-----------E---------------------LLYRIPNAVPISSGQDWNLDELLQVMWD  296 (376)
T ss_dssp             EECEEEEEECGGGSCHHHH-----------H---------------------HHTTSTTEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccceEEEEecccccCHHHH-----------H---------------------HHhcccchhhhhhhhcccchhHHHHHHH
Confidence            4599999999997543321           1                     1122347889999999999999888766


Q ss_pred             HH
Q psy7275          85 AG   86 (150)
Q Consensus        85 ~~   86 (150)
                      .+
T Consensus       297 ~L  298 (376)
T 4a9a_A          297 RL  298 (376)
T ss_dssp             HH
T ss_pred             Hc
Confidence            54

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=92.50  E-value=0.15  Score=42.76  Aligned_cols=61  Identities=10%  Similarity=0.084  Sum_probs=35.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh------cCCcEEEeecCCCCCHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY------STLKVVGFSSVSGEGTEE   77 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy------~~l~vv~VSA~TGeGide   77 (150)
                      .++|+++|.||+|+.+.+...+-.       ..+..+.             -+++.      .++.++.+||++ .++.+
T Consensus       105 ~~ipillvgNK~DL~~~~~R~~~~-------R~V~~~~-------------~~~la~~~~~~~~i~f~eTSAkd-~nV~e  163 (331)
T 3r7w_B          105 PSINIEVLIHKVDGLSEDFKVDAQ-------RDIMQRT-------------GEELLELGLDGVQVSFYLTSIFD-HSIYE  163 (331)
T ss_dssp             TTCEEEEECCCCCSSCSHHHHHHH-------HHHHHHH-------------HHTTSSSSCSCCCEEEECCCSSS-SHHHH
T ss_pred             CCCcEEEEEECcccCchhhhhhHH-------HHhhHHH-------------HHHHHhhcccccCceEEEeccCC-CcHHH
Confidence            468999999999998754321100       1111000             01111      146889999998 47777


Q ss_pred             HHHHHHHH
Q psy7275          78 LLQLIKLA   85 (150)
Q Consensus        78 L~~~I~e~   85 (150)
                      .|..|...
T Consensus       164 AFs~iv~~  171 (331)
T 3r7w_B          164 AFSRIVQK  171 (331)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            77666543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=92.46  E-value=0.13  Score=44.20  Aligned_cols=33  Identities=12%  Similarity=-0.004  Sum_probs=28.4

Q ss_pred             CcEEEeec--CCCCCHHHHHHHHHHHHHHHHhhhH
Q psy7275          62 LKVVGFSS--VSGEGTEELLQLIKLAGEDYEKNYR   94 (150)
Q Consensus        62 l~vv~VSA--~TGeGideL~~~I~e~~~ey~~~y~   94 (150)
                      -.++.||+  .++.|+++|.+.|.+.+.+....|.
T Consensus       225 ~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~  259 (413)
T 1tq4_A          225 PPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNF  259 (413)
T ss_dssp             CCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHH
T ss_pred             CcEEEEecCcCCccCHHHHHHHHHHhCccchhhHH
Confidence            47899999  7777899999999999888877775

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=92.44  E-value=0.03  Score=47.13  Aligned_cols=27  Identities=7%  Similarity=-0.017  Sum_probs=23.5

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      .+.+..+||+++.+++.+|..|.+.+-
T Consensus       301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il  327 (340)
T 4fid_A          301 KVYTNPTNATDGSNIKRVFMLAVDVIM  327 (340)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEeeCcHHHHHHHHHHHHHHH
Confidence            367789999999999999999988763

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=90.15  E-value=0.13  Score=43.47  Aligned_cols=30  Identities=20%  Similarity=0.096  Sum_probs=21.4

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHHHHHhhh
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNY   93 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey~~~y   93 (150)
                      +.+++++||++++++.+|...   -..+|..+|
T Consensus       235 g~~vv~iSAk~E~el~eL~~~---~~~~~l~~~  264 (368)
T 2dby_A          235 GAEVVVVSARLEAELAELSGE---EARELLAAY  264 (368)
T ss_dssp             TCEEEEECHHHHHHHHTSCHH---HHHHHHHHT
T ss_pred             CCeEEEeechhHHHHHHhchH---HHHHHHHHh
Confidence            468999999999888877653   224555544

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=83.38  E-value=1.1  Score=35.00  Aligned_cols=16  Identities=0%  Similarity=-0.217  Sum_probs=14.0

Q ss_pred             CCEEEeeecCCCCCch
Q psy7275           6 FPYTELVVGIDIVNHK   21 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~   21 (150)
                      .|+|+|+||+|+.+++
T Consensus       155 ~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          155 NKAIVALTHAQFSPPD  170 (270)
T ss_dssp             GGEEEEEECCSCCCGG
T ss_pred             cCEEEEEECcccCCcC
Confidence            6999999999997655

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=82.90  E-value=1.5  Score=34.07  Aligned_cols=15  Identities=0%  Similarity=-0.155  Sum_probs=12.7

Q ss_pred             CCEEEeeecCCCCCc
Q psy7275           6 FPYTELVVGIDIVNH   20 (150)
Q Consensus         6 lP~IlV~NKiDl~~~   20 (150)
                      .|+|+|+||+|+.+.
T Consensus       152 ~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          152 CKTLLVLTHAQFSPP  166 (262)
T ss_dssp             GGEEEEEECTTCCCS
T ss_pred             cCEEEEEeCcccCCC
Confidence            499999999999644

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=80.65  E-value=0.57  Score=41.23  Aligned_cols=23  Identities=22%  Similarity=0.198  Sum_probs=20.0

Q ss_pred             cEEEeecCCCCC-HHHHHHHHHHH
Q psy7275          63 KVVGFSSVSGEG-TEELLQLIKLA   85 (150)
Q Consensus        63 ~vv~VSA~TGeG-ideL~~~I~e~   85 (150)
                      +.+.+||.+|.| +++|++.+.+.
T Consensus       287 ~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          287 TQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             HHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cceeeehhcCCCcHHHHHHHHHHH
Confidence            456789999999 99999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	2e-11

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 57.7 bits (138), Expect = 2e-11
 Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 1   MYDTGFPYTELVVGIDIVNH---KYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDE 57
               G      +  +D+++    +   ++ +D +     L+ D S    +   M   + E
Sbjct: 153 DLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTE 212

Query: 58  FYSTLKVVGFSSVSGEGTEELLQLIK 83
               ++V+  S+ + EG E+L  L  
Sbjct: 213 VLPPVRVLYLSAKTREGFEDLETLAY 238

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.29
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.98
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.86
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.74
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.7
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.68
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.63
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.57
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.57
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.48
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.43
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.42
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.41
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.38
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.37
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.37
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.36
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.32
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.31
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.3
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.29
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.28
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.26
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.25
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.25
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.24
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.22
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.2
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.19
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.17
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.16
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.16
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.08
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.07
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.07
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.07
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.06
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.06
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.05
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.04
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.04
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.04
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.03
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.02
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.97
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.96
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.94
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.93
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.92
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.88
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.85
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.84
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.83
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.79
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.77
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.74
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.73
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.71
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.7
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.61
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.49
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.46
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.44
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.43
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.42
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.12
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.08
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	96.75
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.75
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	96.47
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.43
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.06
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.91
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.57
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.49
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.29
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.23
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	90.43
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	84.79

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.29  E-value=4.6e-12  Score=95.86  Aligned_cols=82  Identities=18%  Similarity=0.260  Sum_probs=70.7

Q ss_pred             CCCCEEEeeecCCCCCchhhH---HHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAI---EWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~---ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~   80 (150)
                      ..+|.|+|+||+|+.+.+...   .|.+.+..+...+.....+...+..++...+++|+..+++++|||+||+|+++|+.
T Consensus       156 ~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~  235 (244)
T d1yrba1         156 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET  235 (244)
T ss_dssp             HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred             hCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHH
Confidence            467999999999999876653   55667777777777667788889999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy7275          81 LIKLA   85 (150)
Q Consensus        81 ~I~e~   85 (150)
                      +|.++
T Consensus       236 ~l~e~  240 (244)
T d1yrba1         236 LAYEH  240 (244)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99886

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.98  E-value=3.5e-10  Score=83.77  Aligned_cols=65  Identities=15%  Similarity=0.195  Sum_probs=44.9

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh--hcCCcEEEeecCCCCCHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF--YSTLKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef--y~~l~vv~VSA~TGeGideL~~   80 (150)
                      +.++|+|+|+||+|+.+.+......    .+.+.+                 +..+  ....++++|||++|+|+++|++
T Consensus       109 ~~~~p~iiv~NKiD~~~~~~~~~~~----~~~~~~-----------------~~~~~~~~~~~iv~iSA~~g~gi~eL~~  167 (179)
T d1wb1a4         109 HFNIPIIVVITKSDNAGTEEIKRTE----MIMKSI-----------------LQSTHNLKNSSIIPISAKTGFGVDELKN  167 (179)
T ss_dssp             HTTCCBCEEEECTTSSCHHHHHHHH----HHHHHH-----------------HHHSSSGGGCCEEECCTTTCTTHHHHHH
T ss_pred             hcCCcceeccccccccCHHHHHHHH----HHHHHH-----------------HHHhhcCCCCeEEEEEccCCcCHHHHHH
Confidence            4678999999999998765432211    111111                 1111  2246899999999999999999


Q ss_pred             HHHHHHHH
Q psy7275          81 LIKLAGED   88 (150)
Q Consensus        81 ~I~e~~~e   88 (150)
                      .|.+.+.+
T Consensus       168 ~I~~~l~~  175 (179)
T d1wb1a4         168 LIITTLNN  175 (179)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhcCCc
Confidence            99887754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.86  E-value=3.9e-10  Score=87.01  Aligned_cols=33  Identities=24%  Similarity=0.519  Sum_probs=28.7

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHHHHHhhh
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGEDYEKNY   93 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey~~~y   93 (150)
                      ..++++|||++|+|+++|++.|....++|.++.
T Consensus       191 ~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~~  223 (227)
T d1g7sa4         191 QVSIIPISAITGEGIPELLTMLMGLAQQYLREQ  223 (227)
T ss_dssp             EEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGG
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            358999999999999999999999888876653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=8.7e-09  Score=75.24  Aligned_cols=57  Identities=18%  Similarity=0.240  Sum_probs=42.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+|+|+||+|+.+.+...+       +.+.+.                    ..+.+++.|||+||+|+++|++.|.+
T Consensus       113 ~~p~iiv~NK~D~~~~~~~~~-------~~~~~~--------------------~~~~~~~~iSA~tg~gid~L~~~i~~  165 (180)
T d1udxa2         113 RRPSLVALNKVDLLEEEAVKA-------LADALA--------------------REGLAVLPVSALTGAGLPALKEALHA  165 (180)
T ss_dssp             HSCEEEEEECCTTSCHHHHHH-------HHHHHH--------------------TTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhHHHHHH-------HHHHHH--------------------hcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            469999999999977554211       112221                    13568999999999999999999998


Q ss_pred             HHHH
Q psy7275          85 AGED   88 (150)
Q Consensus        85 ~~~e   88 (150)
                      .+..
T Consensus       166 ~l~~  169 (180)
T d1udxa2         166 LVRS  169 (180)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            8754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.70  E-value=1.4e-08  Score=74.02  Aligned_cols=68  Identities=16%  Similarity=0.185  Sum_probs=47.8

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +.+.|+|+|+||+|+......  ++   +.+.+.+...               ..|....++++|||++|.|+++|++.|
T Consensus       118 ~~~~~~i~v~nK~D~~~~~~~--~~---~~~~~~~~~~---------------~~~~~~~~i~~vSa~~g~gv~~L~~~i  177 (186)
T d1mkya2         118 RRGRASVVVFNKWDLVVHREK--RY---DEFTKLFREK---------------LYFIDYSPLIFTSADKGWNIDRMIDAM  177 (186)
T ss_dssp             HTTCEEEEEEECGGGSTTGGG--CH---HHHHHHHHHH---------------CGGGTTSCEEECBTTTTBSHHHHHHHH
T ss_pred             HcCCceeeeccchhhhcchhh--hh---hhHHHHHHHH---------------hcccCCCeEEEEeCCCCCCHHHHHHHH
Confidence            356799999999998765431  11   2222222210               023345689999999999999999999


Q ss_pred             HHHHHHHH
Q psy7275          83 KLAGEDYE   90 (150)
Q Consensus        83 ~e~~~ey~   90 (150)
                      .+..+.|.
T Consensus       178 ~~~~~~~~  185 (186)
T d1mkya2         178 NLAYASYT  185 (186)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHhCC
Confidence            99998885

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.68  E-value=4.7e-09  Score=76.89  Aligned_cols=57  Identities=23%  Similarity=0.241  Sum_probs=41.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++|+|+|+||+|+.+.....          +.+                 ...+..+.++++|||+||+|+++|+..|.+
T Consensus       117 ~kp~ivv~NK~Dl~~~~~~~----------~~~-----------------~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~  169 (185)
T d1lnza2         117 ERPQIIVANKMDMPEAAENL----------EAF-----------------KEKLTDDYPVFPISAVTREGLRELLFEVAN  169 (185)
T ss_dssp             TSCBCBEEECTTSTTHHHHH----------HHH-----------------HHHCCSCCCBCCCSSCCSSTTHHHHHHHHH
T ss_pred             CCcchhhccccchHhHHHHH----------HHH-----------------HHHhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999997543211          111                 112334678999999999999999999988


Q ss_pred             HHHH
Q psy7275          85 AGED   88 (150)
Q Consensus        85 ~~~e   88 (150)
                      .+.+
T Consensus       170 ~L~~  173 (185)
T d1lnza2         170 QLEN  173 (185)
T ss_dssp             HHTS
T ss_pred             hhhh
Confidence            7754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.63  E-value=2.7e-08  Score=73.38  Aligned_cols=61  Identities=20%  Similarity=0.189  Sum_probs=42.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|+.+.....+   ..+.+.+.+                   ......++++|||++|+|+++|++.|.
T Consensus       133 ~~~piivv~NK~D~~~~~~~~~---~~~~~~~~l-------------------~~~~~~~~~~~SA~~~~gi~el~~~i~  190 (195)
T d1svia_         133 YGIPVIVIATKADKIPKGKWDK---HAKVVRQTL-------------------NIDPEDELILFSSETKKGKDEAWGAIK  190 (195)
T ss_dssp             TTCCEEEEEECGGGSCGGGHHH---HHHHHHHHH-------------------TCCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccCcceechhhccccCHHHHHH---HHHHHHHHh-------------------cccCCCCEEEEeCCCCCCHHHHHHHHH
Confidence            4689999999999876543211   111111111                   123456899999999999999999998


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       191 ~~l  193 (195)
T d1svia_         191 KMI  193 (195)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.57  E-value=3.1e-08  Score=71.67  Aligned_cols=64  Identities=20%  Similarity=0.211  Sum_probs=41.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|+||+|......  ++..   .+.+.+...              +.++  ...+++|||++|.|+++|++.|.
T Consensus       120 ~~~p~iiv~NK~D~~~~~~--~~~~---~~~~~~~~~--------------~~~~--~~~~~~vSA~~g~gi~~L~~~i~  178 (184)
T d2cxxa1         120 LDIPTIVAVNKLDKIKNVQ--EVIN---FLAEKFEVP--------------LSEI--DKVFIPISAKFGDNIERLKNRIF  178 (184)
T ss_dssp             TTCCEEEEEECGGGCSCHH--HHHH---HHHHHHTCC--------------GGGH--HHHEEECCTTTCTTHHHHHHHHH
T ss_pred             cCCCEEEEEeeeehhhhHH--HHHH---HHHHHhccc--------------cccc--CCeEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999875432  1221   111111100              0011  13678999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.|
T Consensus       179 ~~l~e  183 (184)
T d2cxxa1         179 EVIRE  183 (184)
T ss_dssp             HHHHH
T ss_pred             HHccC
Confidence            87754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.57  E-value=1.8e-08  Score=72.87  Aligned_cols=57  Identities=11%  Similarity=0.037  Sum_probs=39.4

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh--cCCcEEEeecCCCCCHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY--STLKVVGFSSVSGEGTEELLQ   80 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy--~~l~vv~VSA~TGeGideL~~   80 (150)
                      +.+.|+|+|+||+|+.+...            ..+                 ..+++  ...++++|||++|.|+++|++
T Consensus       107 ~~~~pviiv~NK~Dl~~~~~------------~~~-----------------~~~~~~~~~~~~i~iSAk~g~gid~L~~  157 (171)
T d1mkya1         107 KSTVDTILVANKAENLREFE------------REV-----------------KPELYSLGFGEPIPVSAEHNINLDTMLE  157 (171)
T ss_dssp             HHTCCEEEEEESCCSHHHHH------------HHT-----------------HHHHGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred             cccccccccchhhhhhhhhh------------hHH-----------------HHHHHhcCCCCeEEEecCCCCCHHHHHH
Confidence            34689999999999853211            000                 01111  234779999999999999999


Q ss_pred             HHHHHHHH
Q psy7275          81 LIKLAGED   88 (150)
Q Consensus        81 ~I~e~~~e   88 (150)
                      .|.+.+.+
T Consensus       158 ~i~~~l~e  165 (171)
T d1mkya1         158 TIIKKLEE  165 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhCCC
Confidence            99876644

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.48  E-value=5.5e-08  Score=72.50  Aligned_cols=59  Identities=19%  Similarity=0.296  Sum_probs=39.6

Q ss_pred             CCC-EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           5 GFP-YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         5 ~lP-~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ++| +|+|+||+|+.+.....+   .++.+.+.+.                  .+ ....++|+|||++|+|+++|+++|
T Consensus       131 ~~~~iiv~inK~D~~d~~~~~~---~~~~~~~~~~------------------~~~~~~~~iIpiSA~~G~ni~~Ll~~I  189 (195)
T d1kk1a3         131 GQKNIIIAQNKIELVDKEKALE---NYRQIKEFIE------------------GTVAENAPIIPISALHGANIDVLVKAI  189 (195)
T ss_dssp             TCCCEEEEEECGGGSCHHHHHH---HHHHHHHHHT------------------TSTTTTCCEEECBTTTTBSHHHHHHHH
T ss_pred             cCccceeeeecccchhhHHHHH---HHHHHHHHhc------------------cccCCCCeEEEEECCCCCCHHHHHHHH
Confidence            445 788899999987654321   2222222221                  11 234689999999999999999998


Q ss_pred             HH
Q psy7275          83 KL   84 (150)
Q Consensus        83 ~e   84 (150)
                      .+
T Consensus       190 ~~  191 (195)
T d1kk1a3         190 ED  191 (195)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.6e-07  Score=67.86  Aligned_cols=62  Identities=8%  Similarity=0.094  Sum_probs=42.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+|+|.||+|+......  +.++.+.|.              +       +  .+++++.|||++|.|++++|..|.
T Consensus       109 ~~~p~ilvgnK~Dl~~~~~v--~~~~~~~~~--------------~-------~--~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1         109 DEFPMILIGNKADLDHQRQV--TQEEGQQLA--------------R-------Q--LKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             SCCSEEEEEECTTCTTSCSS--CHHHHHHHH--------------H-------H--TTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCCEEEEEeccchhhhccc--hHHHHHHHH--------------H-------H--cCCEEEEEcCCCCcCHHHHHHHHH
Confidence            46799999999998654322  011111111              1       1  146889999999999999999998


Q ss_pred             HHHHHHH
Q psy7275          84 LAGEDYE   90 (150)
Q Consensus        84 e~~~ey~   90 (150)
                      +.+..++
T Consensus       164 ~~i~k~~  170 (171)
T d2erya1         164 RVIRKFQ  170 (171)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            8876554

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.43  E-value=1.7e-08  Score=73.60  Aligned_cols=58  Identities=16%  Similarity=0.056  Sum_probs=42.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|+||+|+.....  +++       +.+                  .+.+....+++|||++|.|+++|++.|.
T Consensus       114 ~~~piilv~NK~Dl~~~~~--~~~-------~~~------------------~~~~~~~~~~~iSA~~~~gi~~L~~~i~  166 (178)
T d1wf3a1         114 GKVPILLVGNKLDAAKYPE--EAM-------KAY------------------HELLPEAEPRMLSALDERQVAELKADLL  166 (178)
T ss_dssp             TTSCEEEEEECGGGCSSHH--HHH-------HHH------------------HHTSTTSEEEECCTTCHHHHHHHHHHHH
T ss_pred             cchhhhhhhcccccccCHH--HHH-------HHH------------------HhhcccCceEEEecCCCCCHHHHHHHHH
Confidence            4679999999999876432  222       111                  1223456889999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.|
T Consensus       167 ~~lpe  171 (178)
T d1wf3a1         167 ALMPE  171 (178)
T ss_dssp             TTCCB
T ss_pred             HhCCC
Confidence            76644

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.42  E-value=9e-08  Score=72.06  Aligned_cols=62  Identities=11%  Similarity=0.205  Sum_probs=40.0

Q ss_pred             CCC-CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGF-PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~l-P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++ |+|+++||+|+.+.+....-   .+...+.+.                 ..+....++++|||++|.|+++|+++|
T Consensus       138 ~~i~~iIV~vNK~Dl~~~~~~~~~---~~~~~~~l~-----------------~~~~~~~p~ipiSA~~g~nI~~L~e~i  197 (205)
T d2qn6a3         138 IGVKNLIIVQNKVDVVSKEEALSQ---YRQIKQFTK-----------------GTWAENVPIIPVSALHKINIDSLIEGI  197 (205)
T ss_dssp             TTCCCEEEEEECGGGSCHHHHHHH---HHHHHHHHT-----------------TSTTTTCCEEECBTTTTBSHHHHHHHH
T ss_pred             cCCceeeeccccCCCccchHHHHH---HHHHHHHhc-----------------cccCCCCeEEEEeCCCCCChHHHHHHH
Confidence            354 78889999999876543211   111111110                 012345799999999999999999988


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       198 ~~~  200 (205)
T d2qn6a3         198 EEY  200 (205)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            753

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=2.1e-07  Score=66.33  Aligned_cols=61  Identities=20%  Similarity=0.255  Sum_probs=42.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|.++|+||+|+.+......   ..+.+.+.                  +.++....++++|||++|.|+++|++.|.
T Consensus       126 ~~~~~~~v~~k~D~~~~~~~~~---~~~~~~~~------------------l~~~~~~~~~i~vSA~~g~Gid~L~~~i~  184 (188)
T d1puia_         126 SNIAVLVLLTKADKLASGARKA---QLNMVREA------------------VLAFNGDVQVETFSSLKKQGVDKLRQKLD  184 (188)
T ss_dssp             TTCCEEEEEECGGGSCHHHHHH---HHHHHHHH------------------HGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccchhhhhhccCHHHHHH---HHHHHHHH------------------HHhhCCCCcEEEEeCCCCCCHHHHHHHHH
Confidence            4679999999999877544321   11112222                  22344456899999999999999999887


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       185 ~~  186 (188)
T d1puia_         185 TW  186 (188)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.5e-07  Score=65.13  Aligned_cols=58  Identities=16%  Similarity=0.210  Sum_probs=39.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.......+         ++..        +..       + + +++++.+||++|+|++++|..|.
T Consensus       107 ~~~piilv~nK~Dl~~~~~~~~---------~~~~--------~~~-------~-~-~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_         107 DDVPMVLVGNKCDLAARTVESR---------QAQD--------LAR-------S-Y-GIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             SSCCEEEEEECTTCSCCCSCHH---------HHHH--------HHH-------H-H-TCCEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCeEEEEecccccccccccHH---------HHHH--------HHH-------H-h-CCeEEEEcCCCCcCHHHHHHHHH
Confidence            4689999999999865332111         1100        101       1 1 46899999999999999999987


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       161 ~~i~  164 (166)
T d1ctqa_         161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=3.6e-08  Score=69.99  Aligned_cols=51  Identities=22%  Similarity=0.325  Sum_probs=39.0

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..+.|+|+|+||+|+.+.....                               .+ ....++++|||++|.|+++|++.|
T Consensus       110 ~~~~~iilv~NK~Dl~~~~~~~-------------------------------~~-~~~~~~~~iSAk~~~gi~~L~~~l  157 (161)
T d2gj8a1         110 PAKLPITVVRNKADITGETLGM-------------------------------SE-VNGHALIRLSARTGEGVDVLRNHL  157 (161)
T ss_dssp             CTTCCEEEEEECHHHHCCCCEE-------------------------------EE-ETTEEEEECCTTTCTTHHHHHHHH
T ss_pred             ccccceeeccchhhhhhhHHHH-------------------------------HH-hCCCcEEEEECCCCCCHHHHHHHH
Confidence            3478999999999986543210                               01 134689999999999999999998


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       158 ~~~  160 (161)
T d2gj8a1         158 KQS  160 (161)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=4.1e-07  Score=65.44  Aligned_cols=60  Identities=13%  Similarity=0.142  Sum_probs=39.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.+...... ..+-+.|.                      .-+...+++.+||++|.|++++|..|.
T Consensus       111 ~~~piilv~nK~Dl~~~~~~v~-~~~~~~~~----------------------~~~~~~~~~e~SA~~g~gv~e~f~~l~  167 (175)
T d1ky3a_         111 ETFPFVILGNKIDAEESKKIVS-EKSAQELA----------------------KSLGDIPLFLTSAKNAINVDTAFEEIA  167 (175)
T ss_dssp             TTCCEEEEEECTTSCGGGCCSC-HHHHHHHH----------------------HHTTSCCEEEEBTTTTBSHHHHHHHHH
T ss_pred             ccCcEEEEecccchhhhhcchh-HHHHHHHH----------------------HHcCCCeEEEEeCCCCcCHHHHHHHHH
Confidence            3689999999999865332110 00000000                      113457899999999999999998887


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       168 ~~~  170 (175)
T d1ky3a_         168 RSA  170 (175)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.36  E-value=2.9e-07  Score=65.79  Aligned_cols=61  Identities=11%  Similarity=0.007  Sum_probs=41.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+|+|+||+|+.......+.       .+.+...               .....+.+++.+||+||+|++++++.|.
T Consensus       115 ~~~p~iiv~nK~Dl~~~~~~~~i-------~~~~~~~---------------~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~  172 (177)
T d1zj6a1         115 RKAGLLIFANKQDVKECMTVAEI-------SQFLKLT---------------SIKDHQWHIQACCALTGEGLCQGLEWMM  172 (177)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHHH-------HHHHTGG---------------GCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             cceEEEEEEEcccccccCcHHHH-------HHHHHHH---------------hhHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            46799999999998665432111       1111100               0112346899999999999999999988


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       173 ~~l  175 (177)
T d1zj6a1         173 SRL  175 (177)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.32  E-value=3.6e-07  Score=65.67  Aligned_cols=59  Identities=15%  Similarity=0.178  Sum_probs=39.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+++|.||+|+.++....       .+.+.+..+.               -.....+++.+||+||+|++++++.|.
T Consensus       116 ~~~pillv~nK~Dl~~~~~~~-------~~~~~~~~~~---------------~~~~~~~~~~~SA~tg~gv~e~~~~l~  173 (176)
T d1fzqa_         116 SCVPVLIFANKQDLLTAAPAS-------EIAEGLNLHT---------------IRDRVWQIQSCSALTGEGVQDGMNWVC  173 (176)
T ss_dssp             TTCCEEEEEECTTSTTCCCHH-------HHHHHTTGGG---------------CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCeEEEEEEeccccccccHH-------HHHHHHHHHH---------------HHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            367999999999998654321       1112211000               001235789999999999999999876


Q ss_pred             H
Q psy7275          84 L   84 (150)
Q Consensus        84 e   84 (150)
                      +
T Consensus       174 ~  174 (176)
T d1fzqa_         174 K  174 (176)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=8.4e-07  Score=64.11  Aligned_cols=57  Identities=18%  Similarity=0.138  Sum_probs=38.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+|+|.||+|+......      .+..++..           +       + +..++++.+||++|+|++++|..+.
T Consensus       114 ~~~piilVgnK~Dl~~~~v~------~~~~~~~~-----------~-------~-~~~~~~~e~Sak~~~gI~e~f~~l~  168 (174)
T d1wmsa_         114 ESFPFVILGNKIDISERQVS------TEEAQAWC-----------R-------D-NGDYPYFETSAKDATNVAAAFEEAV  168 (174)
T ss_dssp             TTSCEEEEEECTTCSSCSSC------HHHHHHHH-----------H-------H-TTCCCEEECCTTTCTTHHHHHHHHH
T ss_pred             CCceEEEeccccchhhccCc------HHHHHHHH-----------H-------H-cCCCeEEEEcCCCCcCHHHHHHHHH
Confidence            35799999999998643221      11111111           1       1 2357899999999999999988775


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       169 ~~  170 (174)
T d1wmsa_         169 RR  170 (174)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=5.1e-07  Score=65.50  Aligned_cols=63  Identities=14%  Similarity=0.131  Sum_probs=42.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|.||+|+......     ..+   ++..        +..       +  .+++++.+||++|.|++++|..|.
T Consensus       110 ~~~p~ilvgnK~Dl~~~~~~-----~~~---~~~~--------~~~-------~--~~~~~~e~Sak~g~gv~e~f~~l~  164 (173)
T d2fn4a1         110 DDFPVVLVGNKADLESQRQV-----PRS---EASA--------FGA-------S--HHVAYFEASAKLRLNVDEAFEQLV  164 (173)
T ss_dssp             SCCCEEEEEECGGGGGGCCS-----CHH---HHHH--------HHH-------H--TTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCceEEEEEeechhhcccc-----chh---hhhH--------HHH-------h--cCCEEEEEeCCCCcCHHHHHHHHH
Confidence            46899999999998543211     000   1100        000       1  247889999999999999999999


Q ss_pred             HHHHHHHh
Q psy7275          84 LAGEDYEK   91 (150)
Q Consensus        84 e~~~ey~~   91 (150)
                      +.+.++++
T Consensus       165 ~~i~k~~~  172 (173)
T d2fn4a1         165 RAVRKYQE  172 (173)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            88766543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=5.8e-07  Score=65.28  Aligned_cols=58  Identities=16%  Similarity=0.114  Sum_probs=39.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+|+|.||+|+.+.....     .+   ++..        +.        .-+ +++++.+||++|.|++++|..|.
T Consensus       110 ~~~piilvgnK~Dl~~~~~v~-----~~---~~~~--------~a--------~~~-~~~~~e~Sak~g~~i~~~f~~l~  164 (172)
T d2g3ya1         110 EDIPIILVGNKSDLVRCREVS-----VS---EGRA--------CA--------VVF-DCKFIETSAAVQHNVKELFEGIV  164 (172)
T ss_dssp             TTSCEEEEEECTTCGGGCCSC-----HH---HHHH--------HH--------HHH-TCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCceEEEEecccccccccccc-----HH---HHHH--------HH--------HHc-CCeEEEEeCCCCcCHHHHHHHHH
Confidence            368999999999986542210     01   1100        00        111 47899999999999999999887


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       165 ~~i  167 (172)
T d2g3ya1         165 RQV  167 (172)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.28  E-value=1.6e-07  Score=68.41  Aligned_cols=61  Identities=21%  Similarity=0.166  Sum_probs=40.5

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      +.|+|+|.||+|+.+.....+       +.+.+.                +... ..+.+++++||++|+|++++++.|.
T Consensus       118 ~~piliv~NK~Dl~~~~~~~~-------i~~~~~----------------~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~  174 (182)
T d1moza_         118 DAALLVFANKQDQPGALSASE-------VSKELN----------------LVELKDRSWSIVASSAIKGEGITEGLDWLI  174 (182)
T ss_dssp             SCEEEEEEECTTSTTCCCHHH-------HHHHTT----------------TTTCCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred             CcceEEEEEeeccccccCHHH-------HHHHHH----------------HHHHhhCCCEEEEEECCCCCCHHHHHHHHH
Confidence            579999999999965432111       111111                0000 1135789999999999999999998


Q ss_pred             HHHHH
Q psy7275          84 LAGED   88 (150)
Q Consensus        84 e~~~e   88 (150)
                      +.+.+
T Consensus       175 ~~i~~  179 (182)
T d1moza_         175 DVIKE  179 (182)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=7.3e-07  Score=64.60  Aligned_cols=71  Identities=11%  Similarity=0.156  Sum_probs=41.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.+.....+-.       ...... .....-...    +..-+..++++.+||+||.|++++|+.+.
T Consensus       105 ~~~piilvgnK~Dl~~~~~~~~~~-------~~~~~~-~v~~~e~~~----~a~~~~~~~~~E~SAkt~~gi~e~F~~i~  172 (177)
T d1kmqa_         105 PNVPIILVGNKKDLRNDEHTRREL-------AKMKQE-PVKPEEGRD----MANRIGAFGYMECSAKTKDGVREVFEMAT  172 (177)
T ss_dssp             TTSCEEEEEECGGGTTCHHHHHHH-------HHTTCC-CCCHHHHHH----HHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCceEEeeecccccchhhHHHHH-------HHhhcc-cccHHHHHH----HHHHcCCcEEEEecCCCCcCHHHHHHHHH
Confidence            468999999999997654321100       000000 000000001    11113346899999999999999999988


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       173 ~~~  175 (177)
T d1kmqa_         173 RAA  175 (177)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.26  E-value=1.4e-06  Score=63.50  Aligned_cols=57  Identities=21%  Similarity=0.176  Sum_probs=38.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+|+|.||+|+.+.....+      ...+...                  . ...++++.+||+||.|+++++..+.
T Consensus       110 ~~ip~ilv~nK~Dl~~~~~~~~------~~~~~~~------------------~-~~~~~~~e~Sak~~~gI~e~f~~l~  164 (184)
T d1vg8a_         110 ENFPFVVLGNKIDLENRQVATK------RAQAWCY------------------S-KNNIPYFETSAKEAINVEQAFQTIA  164 (184)
T ss_dssp             GGSCEEEEEECTTSSCCCSCHH------HHHHHHH------------------H-TTSCCEEECBTTTTBSHHHHHHHHH
T ss_pred             cCCCEEEEEEeecccccchhHH------HHHHHHH------------------H-hcCCeEEEEcCCCCcCHHHHHHHHH
Confidence            3579999999999865433211      0111100                  0 1357999999999999999998876


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       165 ~~  166 (184)
T d1vg8a_         165 RN  166 (184)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.8e-07  Score=65.11  Aligned_cols=58  Identities=12%  Similarity=0.103  Sum_probs=39.1

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+|+|.||+|+.+....  ..++-..+.              +       +  .+++++.+||++|+|++++|..|.
T Consensus       104 ~~~~iilvgnK~Dl~~~~~~--~~~~~~~~~--------------~-------~--~~~~~~e~SAk~g~~v~e~f~~i~  158 (164)
T d1yzqa1         104 SDVIIMLVGNKTDLADKRQV--SIEEGERKA--------------K-------E--LNVMFIETSAKAGYNVKQLFRRVA  158 (164)
T ss_dssp             TSSEEEEEEECTTCGGGCCS--CHHHHHHHH--------------H-------H--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCceEEEEecccchhhhhhh--hHHHHHHHH--------------H-------H--cCCEEEEecCCCCcCHHHHHHHHH
Confidence            46799999999998643221  010111011              0       1  146889999999999999999998


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +++
T Consensus       159 ~~l  161 (164)
T d1yzqa1         159 AAL  161 (164)
T ss_dssp             HHS
T ss_pred             Hhh
Confidence            754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=1e-06  Score=62.18  Aligned_cols=52  Identities=21%  Similarity=0.289  Sum_probs=38.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+++++||+|+.+.....           .+                 ...+....++++|||++|+|+++|+++|.+
T Consensus       107 ~~~~i~~~~k~d~~~~~~~~-----------~~-----------------~~~~~~~~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         107 NKRYLVVINKVDVVEKINEE-----------EI-----------------KNKLGTDRHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             TSSEEEEEEECSSCCCCCHH-----------HH-----------------HHHHTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             cccceeeeeeccccchhhhH-----------HH-----------------HHHhCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999998754321           11                 112334568999999999999999999865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=5e-07  Score=64.76  Aligned_cols=58  Identities=12%  Similarity=0.119  Sum_probs=38.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.+....     ..+......                  .++  +++++.+||++|.|++++|+.|.
T Consensus       105 ~~~~iilVgnK~Dl~~~~~v-----~~~~~~~~~------------------~~~--~~~~~e~Sak~g~~v~e~f~~l~  159 (164)
T d1z2aa1         105 GDIPTALVQNKIDLLDDSCI-----KNEEAEGLA------------------KRL--KLRFYRTSVKEDLNVSEVFKYLA  159 (164)
T ss_dssp             CSCCEEEEEECGGGGGGCSS-----CHHHHHHHH------------------HHH--TCEEEECBTTTTBSSHHHHHHHH
T ss_pred             CCceEEEeeccCCcccceee-----eehhhHHHH------------------HHc--CCEEEEeccCCCcCHHHHHHHHH
Confidence            46899999999998643221     001001000                  111  46899999999999999998886


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       160 ~~~  162 (164)
T d1z2aa1         160 EKH  162 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.22  E-value=8.6e-07  Score=63.12  Aligned_cols=60  Identities=23%  Similarity=0.199  Sum_probs=39.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHh-hcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEF-YSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~ef-y~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|+||+|+.++....+       ....+.                ++.. ....+++.+||++|+|++++++.|
T Consensus       102 ~~~p~iiv~nK~Dl~~~~~~~~-------~~~~~~----------------~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l  158 (165)
T d1ksha_         102 AGATLLIFANKQDLPGALSCNA-------IQEALE----------------LDSIRSHHWRIQGCSAVTGEDLLPGIDWL  158 (165)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHH-------HHHHTT----------------GGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred             CCCceEEEEeccccccccCHHH-------HHHHHH----------------hhhhhcCCCEEEEEECCCCCCHHHHHHHH
Confidence            4579999999999865433211       111111                0011 124578999999999999999988


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       159 ~~~i  162 (165)
T d1ksha_         159 LDDI  162 (165)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.6e-06  Score=62.62  Aligned_cols=59  Identities=14%  Similarity=0.021  Sum_probs=39.1

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|.||+|+......  +.++-..+.                     .+  .+.+++.|||+||.|+++++..+
T Consensus       106 ~~~~piilv~nK~D~~~~~~~--~~~~~~~~a---------------------~~--~~~~~~e~Sa~tg~~V~e~f~~i  160 (173)
T d2a5ja1         106 SSNMVIMLIGNKSDLESRRDV--KREEGEAFA---------------------RE--HGLIFMETSAKTACNVEEAFINT  160 (173)
T ss_dssp             CTTCEEEEEEECTTCGGGCCS--CHHHHHHHH---------------------HH--HTCEEEEECTTTCTTHHHHHHHH
T ss_pred             CCCCeEEEEecCCchhhhhhh--HHHHHHHHH---------------------HH--cCCEEEEecCCCCCCHHHHHHHH
Confidence            357899999999997543221  111111111                     01  14689999999999999999888


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       161 ~~~i  164 (173)
T d2a5ja1         161 AKEI  164 (173)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=4.7e-07  Score=64.93  Aligned_cols=65  Identities=15%  Similarity=0.164  Sum_probs=44.4

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      +...|.|+|+||+|.......  +.    ...+.                  +.+.+...++++|||++|+|+++|+++|
T Consensus       111 ~~~~~~i~v~~k~d~~~~~~~--~~----~~~~~------------------~~~~~~~~~~~~vSA~~g~gi~~L~~~i  166 (179)
T d1egaa1         111 EGKAPVILAVNKVDNVQEKAD--LL----PHLQF------------------LASQMNFLDIVPISAETGLNVDTIAAIV  166 (179)
T ss_dssp             SSSSCEEEEEESTTTCCCHHH--HH----HHHHH------------------HHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred             hccCceeeeeeeeeccchhhh--hh----hHhhh------------------hhhhcCCCCEEEEeCcCCCCHHHHHHHH
Confidence            456799999999998765321  11    11111                  1122455789999999999999999999


Q ss_pred             HHHHHHHHh
Q psy7275          83 KLAGEDYEK   91 (150)
Q Consensus        83 ~e~~~ey~~   91 (150)
                      .+.+.|-..
T Consensus       167 ~~~lpe~~~  175 (179)
T d1egaa1         167 RKHLPEATH  175 (179)
T ss_dssp             HTTCCBCCC
T ss_pred             HHhCCCCCC
Confidence            887654333

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.6e-06  Score=62.51  Aligned_cols=58  Identities=12%  Similarity=0.048  Sum_probs=37.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+|+|.||+|+.+....     ..+   ++..        +..       .  .+++++.+||++|.|++++|..|.
T Consensus       104 ~~~piilvgnK~Dl~~~~~v-----~~~---~~~~--------~~~-------~--~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1         104 DDVPIILVGNKSDLVRSREV-----SVD---EGRA--------CAV-------V--FDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             -CCCEEEEEECTTCGGGCCS-----CHH---HHHH--------HHH-------H--HTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccceEEEeecccchhhhcch-----hHH---HHHH--------HHH-------h--cCCEEEEEeCCCCcCHHHHHHHHH
Confidence            45799999999998643221     000   1100        000       1  146889999999999999999886


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       159 ~~i  161 (168)
T d2gjsa1         159 RQI  161 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            533

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=5.3e-07  Score=64.66  Aligned_cols=58  Identities=17%  Similarity=0.075  Sum_probs=38.6

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.......     .+   ++..        +.       .+  .+++++.|||+||.|++++|..|.
T Consensus       107 ~~~piilvgnK~Dl~~~~~~~-----~~---~~~~--------~~-------~~--~~~~~~e~Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_         107 EKVPVILVGNKVDLESEREVS-----SS---EGRA--------LA-------EE--WGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             SCCCEEEEEECGGGGGGCCSC-----HH---HHHH--------HH-------HH--HTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEccchhhcccch-----HH---HHHH--------HH-------HH--cCCeEEEECCCCCcCHHHHHHHHH
Confidence            568999999999985432210     00   1100        00       11  146899999999999999999887


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       162 ~~i  164 (167)
T d1kaoa_         162 RQM  164 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            644

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=8.1e-07  Score=63.75  Aligned_cols=56  Identities=14%  Similarity=0.026  Sum_probs=37.2

Q ss_pred             CCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      .++|+|+|.||+|+...... .+..   +.|.              +       +  .+++++.+||+||.|++++|..|
T Consensus       107 ~~~piilVgnK~Dl~~~~~v~~~e~---~~~~--------------~-------~--~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1         107 ESIPIMLVGNKCDESPSREVQSSEA---EALA--------------R-------T--WKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             -CCCEEEEEECGGGGGGCCSCHHHH---HHHH--------------H-------H--HTCEEEECBTTTTBSHHHHHHHH
T ss_pred             CCCcEEEEeecccccccccccHHHH---HHHH--------------H-------H--cCCeEEEEcCCCCcCHHHHHHHH
Confidence            46799999999998543221 0101   1111              1       1  14688999999999999999887


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       161 ~~~  163 (171)
T d2erxa1         161 LNL  163 (171)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.17  E-value=1.2e-06  Score=63.36  Aligned_cols=58  Identities=9%  Similarity=0.108  Sum_probs=37.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+++|.||+|+......     ..+....           +..       ++  +.+++.+||++|.|++++|..|.
T Consensus       108 ~~~piiivgnK~Dl~~~~~v-----~~~~~~~-----------~~~-------~~--~~~~~e~Sak~g~gv~e~f~~l~  162 (168)
T d1u8za_         108 ENVPFLLVGNKSDLEDKRQV-----SVEEAKN-----------RAD-------QW--NVNYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             TTSCEEEEEECGGGGGGCCS-----CHHHHHH-----------HHH-------HH--TCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEeccccccccccc-----cHHHHHH-----------HHH-------Hc--CCeEEEEcCCCCcCHHHHHHHHH
Confidence            46899999999998532211     0110001           001       11  46889999999999999998876


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       163 ~~i  165 (168)
T d1u8za_         163 REI  165 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=7.6e-07  Score=63.79  Aligned_cols=59  Identities=12%  Similarity=0.146  Sum_probs=38.6

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+++|.||+|+..+...     +.+..++           +..       + + +.+++.+||++|.|++++|..|
T Consensus       107 ~~~~piilvgnK~Dl~~~r~v-----~~~~~~~-----------~a~-------~-~-~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1         107 KVQIPIMLVGNKKDLHMERVI-----SYEEGKA-----------LAE-------S-W-NAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             SSCCCEEEEEECTTCGGGCCS-----CHHHHHH-----------HHH-------H-H-TCEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccceeeeccccccccccch-----hHHHHHH-----------HHH-------H-c-CCEEEEEecCCCCCHHHHHHHH
Confidence            356899999999998543221     1111111           001       1 1 4688999999999999999987


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      ...+
T Consensus       162 i~~~  165 (167)
T d1xtqa1         162 ILEA  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6544

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=7.6e-07  Score=64.98  Aligned_cols=71  Identities=18%  Similarity=0.220  Sum_probs=40.8

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.......+         .... ..  ...........+..-+....++.+||+||.|++++|..|.
T Consensus       108 ~~~piilvgnK~Dl~~~~~~~~---------~~~~-~~--~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~  175 (183)
T d1mh1a_         108 PNTPIILVGTKLDLRDDKDTIE---------KLKE-KK--LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI  175 (183)
T ss_dssp             TTSCEEEEEECHHHHTCHHHHH---------HHHH-TT--CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEeecccchhhhhhhh---------hhhh-cc--ccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHH
Confidence            4689999999999865543211         0000 00  0000000000011113457899999999999999999887


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       176 ~~i  178 (183)
T d1mh1a_         176 RAV  178 (183)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.6e-06  Score=62.34  Aligned_cols=72  Identities=13%  Similarity=0.189  Sum_probs=41.8

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|.||+|+.+.....+-..+.       . .......-.+.    +..-+....++.+||++|.|++++|+.+
T Consensus       111 ~~~~~~ilvgnK~Dl~~~~~~~~~~~~~-------~-~r~v~~~~~~~----~a~~~~~~~~~E~SAk~~~gv~e~F~~l  178 (185)
T d2atxa1         111 APNVPFLLIGTQIDLRDDPKTLARLNDM-------K-EKPICVEQGQK----LAKEIGACCYVECSALTQKGLKTVFDEA  178 (185)
T ss_dssp             STTCCEEEEEECTTSTTCHHHHHHHTTT-------T-CCCCCHHHHHH----HHHHHTCSCEEECCTTTCTTHHHHHHHH
T ss_pred             CCCCCeeEeeeccccccchhhhhhhhhc-------c-cccccHHHHHH----HHHHcCCCEEEEecCCCCcCHHHHHHHH
Confidence            3468999999999998755421100000       0 00000000011    1111335688999999999999999987


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       179 i~~i  182 (185)
T d2atxa1         179 IIAI  182 (185)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.7e-06  Score=60.97  Aligned_cols=59  Identities=12%  Similarity=0.079  Sum_probs=39.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+......     ..+   ++..        +       ..+ +...+++.+||++|+|++++|..|.
T Consensus       107 ~~~p~ilvgnK~Dl~~~~~~-----~~~---~~~~--------~-------~~~-~~~~~~~e~Sak~g~gv~e~F~~l~  162 (167)
T d1c1ya_         107 EDVPMILVGNKCDLEDERVV-----GKE---QGQN--------L-------ARQ-WCNCAFLESSAKSKINVNEIFYDLV  162 (167)
T ss_dssp             SCCCEEEEEECTTCGGGCCS-----CHH---HHHH--------H-------HHH-TTSCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCeEEEEEEecCccccccc-----chh---HHHH--------H-------HHH-hCCCEEEEEcCCCCcCHHHHHHHHH
Confidence            46899999999998543221     000   1100        0       012 2357899999999999999999887


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       163 ~~i  165 (167)
T d1c1ya_         163 RQI  165 (167)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.08  E-value=1.7e-06  Score=67.81  Aligned_cols=56  Identities=21%  Similarity=0.249  Sum_probs=40.5

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc-CCcEEEeecCCCCCHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS-TLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~-~l~vv~VSA~TGeGideL~~~   81 (150)
                      ..++|.|+||||+||.+.+....|..       ..                   +.|. ..+++.|||.+|+|+++|...
T Consensus        39 ~~~i~pvIvlnK~DL~~~~~~~~~~~-------~~-------------------~~~~~~~~v~~vSa~~~~g~~~L~~~   92 (225)
T d1u0la2          39 KNELETVMVINKMDLYDEDDLRKVRE-------LE-------------------EIYSGLYPIVKTSAKTGMGIEELKEY   92 (225)
T ss_dssp             HTTCEEEEEECCGGGCCHHHHHHHHH-------HH-------------------HHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred             HcCCCEEEEEeCcccCCHHHHHHHHH-------hh-------------------cccccceeEEEeccccchhHhhHHHH
Confidence            35789999999999987665433331       11                   2232 358999999999999999887


Q ss_pred             HHH
Q psy7275          82 IKL   84 (150)
Q Consensus        82 I~e   84 (150)
                      +..
T Consensus        93 l~~   95 (225)
T d1u0la2          93 LKG   95 (225)
T ss_dssp             HSS
T ss_pred             hcC
Confidence            753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=2.3e-06  Score=61.31  Aligned_cols=58  Identities=12%  Similarity=-0.049  Sum_probs=38.4

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ....|+++|.||+|+.+....     ..+..++..                  .+  .+.+++.+||++|.|++++|..|
T Consensus       107 ~~~~~iilvgnK~Dl~~~~~v-----~~~~~~~~~------------------~~--~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1         107 PPSIVVAIAGNKCDLTDVREV-----MERDAKDYA------------------DS--IHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             CTTSEEEEEEECTTCGGGCCS-----CHHHHHHHH------------------HH--TTCEEEECBTTTTBSHHHHHHHH
T ss_pred             CCcceEEEecccchhccccch-----hHHHHHHHH------------------HH--cCCEEEEEecCCCCCHHHHHHHH
Confidence            356799999999998543221     111111110                  11  14688999999999999999988


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       162 ~~~  164 (167)
T d1z0ja1         162 SRR  164 (167)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.07  E-value=2e-06  Score=62.03  Aligned_cols=59  Identities=20%  Similarity=0.112  Sum_probs=38.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhh-cCCcEEEeecCCCCCHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFY-STLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy-~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ...|+++|.||+|+.++....+       ....+.                +.... ....++.+||+||+|++|++++|
T Consensus       112 ~~~piiiv~NK~Dl~~~~~~~~-------i~~~~~----------------~~~~~~~~~~~~e~SA~tg~gv~e~~~~l  168 (173)
T d1e0sa_         112 RDAIILIFANKQDLPDAMKPHE-------IQEKLG----------------LTRIRDRNWYVQPSCATSGDGLYEGLTWL  168 (173)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHH-------HHHHTT----------------GGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             ccceeeeeeecccccccccHHH-------HHHHHH----------------HHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            3679999999999975433211       111110                00111 13468899999999999999998


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       169 ~~~  171 (173)
T d1e0sa_         169 TSN  171 (173)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=6.3e-06  Score=59.40  Aligned_cols=58  Identities=9%  Similarity=0.193  Sum_probs=39.0

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCC-CHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGE-GTEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGe-GideL~~~I   82 (150)
                      ..+|+|+|.||+|+......     ..+   ++..        +.+       +.  +++++.+||++|. |++++|..+
T Consensus       108 ~~~p~ilvgnK~Dl~~~~~v-----~~e---~~~~--------~~~-------~~--~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1         108 ESFPMILVANKVDLMHLRKV-----TRD---QGKE--------MAT-------KY--NIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             SCCCEEEEEECTTCSTTCCS-----CHH---HHHH--------HHH-------HH--TCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             cCccEEEEecccchhhhcee-----ehh---hHHH--------HHH-------Hc--CCEEEEEcCCCCCcCHHHHHHHH
Confidence            46899999999998654321     011   1110        111       11  4689999999997 999999988


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       163 ~~~i  166 (169)
T d1x1ra1         163 VRVI  166 (169)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.4e-06  Score=61.34  Aligned_cols=58  Identities=17%  Similarity=0.172  Sum_probs=38.5

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|+|+|.||+|+......     +.+..++..                  ..  ...+++.+||++|.|+++++..|
T Consensus       109 ~~~~~iilvgnK~Dl~~~~~v-----~~e~~~~~~------------------~~--~~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_         109 SPNIVIALSGNKADLANKRAV-----DFQEAQSYA------------------DD--NSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             CTTCEEEEEEECGGGGGGCCS-----CHHHHHHHH------------------HH--TTCEEEECCTTTCTTHHHHHHHH
T ss_pred             CCCceEEeecccccccccccc-----cHHHHHHHH------------------Hh--cCCEEEEeeCCCCCCHHHHHHHH
Confidence            346899999999998543221     011111100                  01  24689999999999999999988


Q ss_pred             HHH
Q psy7275          83 KLA   85 (150)
Q Consensus        83 ~e~   85 (150)
                      .+.
T Consensus       164 ~~~  166 (170)
T d1r2qa_         164 AKK  166 (170)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=3.3e-06  Score=61.00  Aligned_cols=58  Identities=12%  Similarity=0.019  Sum_probs=38.2

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+++|.||+|+.+....  +.   +......                   . ....+++.+||++|+|+++++..+.
T Consensus       108 ~~~piilvgnK~Dl~~~~~~--~~---~~~~~~~-------------------~-~~~~~~~e~Sa~~g~~i~e~f~~l~  162 (175)
T d2f9la1         108 SNIVIMLVGNKSDLRHLRAV--PT---DEARAFA-------------------E-KNNLSFIETSALDSTNVEEAFKNIL  162 (175)
T ss_dssp             TTCEEEEEEECTTCGGGCCS--CH---HHHHHHH-------------------H-HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCcEEEEEeeecccccccc--hH---HHHHHhh-------------------c-ccCceEEEEecCCCcCHHHHHHHHH
Confidence            46899999999998643221  00   0000000                   0 1246899999999999999988876


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       163 ~~i  165 (175)
T d2f9la1         163 TEI  165 (175)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.9e-06  Score=60.68  Aligned_cols=57  Identities=14%  Similarity=0.112  Sum_probs=37.7

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+|+|.||+|+......  +.++-+.+.                     .+  ...+++.+||+||+|++++|..+.
T Consensus       108 ~~~~iilvgnK~Dl~~~~~~--~~~~~~~~~---------------------~~--~~~~~~e~Saktg~~v~e~f~~i~  162 (166)
T d1z0fa1         108 PNTVIILIGNKADLEAQRDV--TYEEAKQFA---------------------EE--NGLLFLEASAKTGENVEDAFLEAA  162 (166)
T ss_dssp             TTCEEEEEEECTTCGGGCCS--CHHHHHHHH---------------------HH--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccceEEEEcccccchhhccc--HHHHHHHHH---------------------HH--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            45799999999998543221  111111110                     01  146899999999999999998876


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       163 ~~  164 (166)
T d1z0fa1         163 KK  164 (166)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=2.8e-06  Score=61.06  Aligned_cols=27  Identities=11%  Similarity=0.047  Sum_probs=21.4

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHH-HHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIK-LAGE   87 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~-e~~~   87 (150)
                      +++++.|||+||+|++++|..|. +++.
T Consensus       141 ~~~~~~~SAktg~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         141 DMYYLETSAKESDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             TCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCEEEEEccCCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999976554 4443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.04  E-value=4.3e-06  Score=58.14  Aligned_cols=61  Identities=11%  Similarity=0.041  Sum_probs=40.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+++|.||.|+.......+.       ...+....               -.....+++++||++|+|++++++.|.
T Consensus       105 ~~~~i~iv~nk~Dl~~~~~~~~i-------~~~~~~~~---------------~~~~~~~~~~~SA~~g~gv~e~~~~l~  162 (169)
T d1upta_         105 RKAILVVFANKQDMEQAMTSSEM-------ANSLGLPA---------------LKDRKWQIFKTSATKGTGLDEAMEWLV  162 (169)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHHH-------HHHHTGGG---------------CTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccceEEEEEeeccccccccHHHH-------HHHHHHHH---------------HhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            35689999999999765432111       11111000               012346899999999999999999997


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       163 ~~l  165 (169)
T d1upta_         163 ETL  165 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            755

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=2.3e-06  Score=61.80  Aligned_cols=56  Identities=14%  Similarity=0.004  Sum_probs=39.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .++|+|+|.||+|+.......+      + ....                    ...+++++.+||++|.|++++|..|.
T Consensus       106 ~~~piilvgnK~Dl~~~~~~~~------~-~~~~--------------------~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_         106 ENIPIVLCGNKVDIKDRKVKAK------S-IVFH--------------------RKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             CSCCEEEEEECCCCSCSCCTTT------S-HHHH--------------------SSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             CCCceeeecchhhhhhhhhhhH------H-HHHH--------------------HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            3689999999999865432110      0 0000                    01357899999999999999998887


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       159 ~~l  161 (170)
T d1i2ma_         159 RKL  161 (170)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=3.4e-06  Score=60.61  Aligned_cols=27  Identities=4%  Similarity=-0.093  Sum_probs=23.7

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      +++++.+||+||.|++++++.|.+.+-
T Consensus       141 ~~~~~e~Sak~g~gv~e~f~~l~~~i~  167 (169)
T d3raba_         141 GFEFFEASAKDNINVKQTFERLVDVIC  167 (169)
T ss_dssp             TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            468999999999999999999887653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=9.3e-06  Score=66.12  Aligned_cols=68  Identities=15%  Similarity=0.061  Sum_probs=41.7

Q ss_pred             CCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHHH
Q psy7275           6 FPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus         6 lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      ++-|+|+||+|..+.+.+..-..++   ..++..           +.... +. -..+++.+||.+|+|+++|+++|.+.
T Consensus       193 ~aDi~VvNKaD~~~~~~~~~~~~~~---~~al~~-----------~~~~~-~~-w~p~V~~~SA~~g~Gi~eL~~~I~~~  256 (327)
T d2p67a1         193 VADLIVINKDDGDNHTNVAIARHMY---ESALHI-----------LRRKY-DE-WQPRVLTCSALEKRGIDEIWHAIIDF  256 (327)
T ss_dssp             HCSEEEECCCCTTCHHHHHHHHHHH---HHHHHH-----------SCCSB-TT-BCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             cccEEEEEeecccchHHHHHHHHHH---HHHhhh-----------cccCC-CC-CcceeEEEEeeCCCCHHHHHHHHHHH
Confidence            3668999999987655432211111   122210           00000 01 13589999999999999999999887


Q ss_pred             HHHH
Q psy7275          86 GEDY   89 (150)
Q Consensus        86 ~~ey   89 (150)
                      .+..
T Consensus       257 ~~~l  260 (327)
T d2p67a1         257 KTAL  260 (327)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=6.8e-06  Score=59.59  Aligned_cols=26  Identities=12%  Similarity=0.098  Sum_probs=23.4

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      +++++.+||++|+|+++++..+.+.+
T Consensus       152 ~~~~~e~Sak~~~~i~e~f~~l~~~i  177 (186)
T d2f7sa1         152 GIPYFETSAATGQNVEKAVETLLDLI  177 (186)
T ss_dssp             TCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999988765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=7.1e-06  Score=58.92  Aligned_cols=58  Identities=17%  Similarity=0.153  Sum_probs=37.4

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCC-HHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEG-TEELLQLI   82 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeG-ideL~~~I   82 (150)
                      ...|+|+|.||+|+......     +.+   ++..        +..       + + +++++.+||+||.| ++++|..|
T Consensus       105 ~~~piilvgnK~Dl~~~r~V-----~~~---e~~~--------~a~-------~-~-~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1         105 KNVTLILVGNKADLDHSRQV-----STE---EGEK--------LAT-------E-L-ACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             SCCCEEEEEECGGGGGGCCS-----CHH---HHHH--------HHH-------H-H-TSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cCcceeeeccchhhhhhccC-----cHH---HHHH--------HHH-------H-h-CCeEEEEccccCCcCHHHHHHHH
Confidence            46899999999998532211     011   1100        111       1 1 46899999999997 99999877


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       160 ~~~i  163 (168)
T d2atva1         160 CREV  163 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=3.7e-06  Score=60.42  Aligned_cols=58  Identities=14%  Similarity=0.057  Sum_probs=38.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ..+|+|+|.||+|+.......  .++...+.              .         ..+++++.|||++|+|++++|..+.
T Consensus       109 ~~~piivv~nK~D~~~~~~~~--~~~~~~~~--------------~---------~~~~~~~e~Sak~~~gi~e~f~~l~  163 (174)
T d2bmea1         109 QNIVIILCGNKKDLDADREVT--FLEASRFA--------------Q---------ENELMFLETSALTGENVEEAFVQCA  163 (174)
T ss_dssp             TTCEEEEEEECGGGGGGCCSC--HHHHHHHH--------------H---------HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CceEEEEEEecccccchhchh--hhHHHHHH--------------H---------hCCCEEEEeeCCCCcCHHHHHHHHH
Confidence            468999999999975432210  00001000              0         1246899999999999999998876


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       164 ~~i  166 (174)
T d2bmea1         164 RKI  166 (174)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.94  E-value=2.9e-05  Score=62.92  Aligned_cols=29  Identities=28%  Similarity=0.322  Sum_probs=25.4

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~ey   89 (150)
                      ..+++.+||.+|+|+++|.++|.+..+..
T Consensus       230 ~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         230 TPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             CCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            35899999999999999999998877644

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.93  E-value=8.6e-07  Score=69.77  Aligned_cols=58  Identities=9%  Similarity=0.106  Sum_probs=39.5

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ..++|.|||+||+||.+.....+|+..+...+..+                       +.+++.|||.+|.|+++|...+
T Consensus        39 ~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~-----------------------g~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          39 ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-----------------------GYDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-----------------------TCCEEECCHHHHTTCTTTGGGG
T ss_pred             HcCCCEEEEEecccccccHHHHHHHHHHHHHHhhc-----------------------cccceeeecCChhHHHHHHHhh
Confidence            35789999999999987765555553332222221                       3578888888888888877666


Q ss_pred             H
Q psy7275          83 K   83 (150)
Q Consensus        83 ~   83 (150)
                      .
T Consensus        96 ~   96 (231)
T d1t9ha2          96 Q   96 (231)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.92  E-value=6.9e-06  Score=58.55  Aligned_cols=58  Identities=16%  Similarity=0.100  Sum_probs=37.6

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|+++|.||+|+.++....+       +.+.+...      ...         ....+++.+||++|+|++++++.|.+
T Consensus       104 ~~pi~lv~nK~Dl~~~~~~~~-------i~~~~~~~------~~~---------~~~~~~~e~Sa~~g~gv~e~~~~l~~  161 (164)
T d1zd9a1         104 GIPVLVLGNKRDLPGALDEKE-------LIEKMNLS------AIQ---------DREICCYSISCKEKDNIDITLQWLIQ  161 (164)
T ss_dssp             TCCEEEEEECTTSTTCCCHHH-------HHHHTTGG------GCC---------SSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCcEEEEEeccccchhhhHHH-------HHHHHHHH------HHH---------hCCCEEEEEeCcCCcCHHHHHHHHHH
Confidence            579999999999875433211       11211100      000         12358899999999999999988765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=6.7e-06  Score=58.75  Aligned_cols=26  Identities=23%  Similarity=0.066  Sum_probs=22.8

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      +++++.+||++|.|++++|..|.+.+
T Consensus       139 ~~~~~e~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         139 GAKHYHTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             TCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCcCHHHHHHHHHHHH
Confidence            46899999999999999999887654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=8.4e-06  Score=59.70  Aligned_cols=71  Identities=17%  Similarity=0.228  Sum_probs=40.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      .+.|+++|.||+|+.+.....+.+..        .........-...    +..-+...+++.|||++|.|++++|+.+.
T Consensus       106 ~~~~i~lvgnK~Dl~~~~~~~~~~~~--------~~~~~v~~~~~~~----~~~~~~~~~~~e~SAk~~~~V~e~f~~l~  173 (191)
T d2ngra_         106 PKTPFLLVGTQIDLRDDPSTIEKLAK--------NKQKPITPETAEK----LARDLKAVKYVECSALTQKGLKNVFDEAI  173 (191)
T ss_dssp             TTCCEEEEEECGGGGGCHHHHHHHHT--------TTCCCCCHHHHHH----HHHHTTCSCEEECCTTTCTTHHHHHHHHH
T ss_pred             CCCceEEEeccccccccchhhhhhhh--------cccccccHHHHHH----HHHHcCCCeEEEEeCCCCcCHHHHHHHHH
Confidence            47899999999998655432111100        0000000000000    11113456899999999999999998776


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      ..+
T Consensus       174 ~~~  176 (191)
T d2ngra_         174 LAA  176 (191)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.84  E-value=8.2e-06  Score=56.45  Aligned_cols=60  Identities=17%  Similarity=0.065  Sum_probs=38.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+++|.||.|+.+.....+       +......  .    +         -.....+++++||+||+|++++++.|.
T Consensus       100 ~~~~i~~v~~k~d~~~~~~~~~-------i~~~~~~--~----~---------~~~~~~~~~~~SAktg~gi~e~~~~l~  157 (160)
T d1r8sa_         100 RDAVLLVFANKQDLPNAMNAAE-------ITDKLGL--H----S---------LRHRNWYIQATCATSGDGLYEGLDWLS  157 (160)
T ss_dssp             TTCEEEEEEECTTSTTCCCHHH-------HHHHTTG--G----G---------CSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             cCceEEEEeecccccccccHHH-------HHHHHHH--H----H---------HhhCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3569999999999876543211       0000000  0    0         012245889999999999999999887


Q ss_pred             HH
Q psy7275          84 LA   85 (150)
Q Consensus        84 e~   85 (150)
                      +.
T Consensus       158 ~~  159 (160)
T d1r8sa_         158 NQ  159 (160)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=9.8e-06  Score=57.39  Aligned_cols=54  Identities=11%  Similarity=0.128  Sum_probs=34.7

Q ss_pred             CCCCCEEEeeecCCCCCchhh-HHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCC---CCHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYA-IEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSG---EGTEEL   78 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~-~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TG---eGideL   78 (150)
                      ..++|+++|.||+|+..+... .+   +.+.|.                     .+  .+++++.+||+||   +|++++
T Consensus       107 ~~~~pi~lvgnK~Dl~~~~~v~~~---~~~~~~---------------------~~--~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1         107 ANDIPRILVGNKCDLRSAIQVPTD---LAQKFA---------------------DT--HSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             CSCCCEEEEEECTTCGGGCCSCHH---HHHHHH---------------------HH--TTCCEEECCSSSGGGGSCHHHH
T ss_pred             CCCCeEEEEeccccchhccchhHH---HHHHHH---------------------HH--CCCEEEEEecccCCcCcCHHHH
Confidence            347899999999998654221 11   001111                     01  1468999999985   488998


Q ss_pred             HHHH
Q psy7275          79 LQLI   82 (150)
Q Consensus        79 ~~~I   82 (150)
                      |..|
T Consensus       161 F~~l  164 (165)
T d1z06a1         161 FMTL  164 (165)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8876

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.79  E-value=1.9e-05  Score=61.84  Aligned_cols=57  Identities=19%  Similarity=0.355  Sum_probs=44.8

Q ss_pred             CCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHHH
Q psy7275           5 GFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus         5 ~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.|.|+|+||+|+++.+...+|.+.|.                           -....++.+||.+|.|..++...+.+
T Consensus        42 ~Kp~IlVlNK~DLv~~~~~~~w~~~f~---------------------------~~~~~~i~isa~~~~~~~~~~~~~~~   94 (273)
T d1puja_          42 NKPRIMLLNKADKADAAVTQQWKEHFE---------------------------NQGIRSLSINSVNGQGLNQIVPASKE   94 (273)
T ss_dssp             SSCEEEEEECGGGSCHHHHHHHHHHHH---------------------------TTTCCEEECCTTTCTTGGGHHHHHHH
T ss_pred             CCCeEEEEECccCCchHHHHHHHHHHH---------------------------hcCCccceeecccCCCccccchhhhh
Confidence            569999999999998887777773322                           02468899999999999999888776


Q ss_pred             HHHH
Q psy7275          85 AGED   88 (150)
Q Consensus        85 ~~~e   88 (150)
                      .+.+
T Consensus        95 ~l~~   98 (273)
T d1puja_          95 ILQE   98 (273)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            6544

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=3.7e-05  Score=56.36  Aligned_cols=59  Identities=8%  Similarity=0.032  Sum_probs=39.6

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ...+|+|+|.||+|+.+.....     .+......                    ......++.+||++|.|+++++..+
T Consensus       109 ~~~~~iilv~nK~D~~~~~~~~-----~~~~~~~~--------------------~~~~~~~~e~SAk~g~gi~e~f~~l  163 (194)
T d2bcgy1         109 TSTVLKLLVGNKCDLKDKRVVE-----YDVAKEFA--------------------DANKMPFLETSALDSTNVEDAFLTM  163 (194)
T ss_dssp             CTTCEEEEEEECTTCTTTCCSC-----HHHHHHHH--------------------HHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred             cCCceEEEEEeccccccccchh-----HHHHhhhh--------------------hccCcceEEEecCcCccHHHHHHHH
Confidence            3467999999999987643321     11001100                    0135689999999999999999887


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      .+.+
T Consensus       164 ~~~i  167 (194)
T d2bcgy1         164 ARQI  167 (194)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=9.3e-06  Score=55.76  Aligned_cols=23  Identities=26%  Similarity=0.218  Sum_probs=20.1

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ..++.+||+||+|++|+++.|.+
T Consensus       143 ~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         143 VEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CEEEEeeCCCCCCHHHHHHHHhC
Confidence            47899999999999999998753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4e-05  Score=54.69  Aligned_cols=58  Identities=16%  Similarity=0.102  Sum_probs=39.3

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+|+|.||+|........     .+   ++..        +..       .  .+.+++.+||+||.|+++++..|.
T Consensus       111 ~~~~iilv~~k~d~~~~~~v~-----~~---~~~~--------~~~-------~--~~~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1         111 HDVALMLLGNKVDSAHERVVK-----RE---DGEK--------LAK-------E--YGLPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             TTCEEEEEEECCSTTSCCCSC-----HH---HHHH--------HHH-------H--HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             CCceEEEEEeeechhhccccc-----HH---HHHH--------HHH-------H--cCCEEEEEeCCCCcCHHHHHHHHH
Confidence            467999999999987643320     11   1100        000       1  147999999999999999999987


Q ss_pred             HHH
Q psy7275          84 LAG   86 (150)
Q Consensus        84 e~~   86 (150)
                      +.+
T Consensus       166 ~~i  168 (170)
T d2g6ba1         166 KEL  168 (170)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.71  E-value=5.3e-06  Score=58.55  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.1

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      ++.+++|||+||+|++|+++.|.+
T Consensus       160 ~~~~~~~SA~tg~Gi~e~~~~l~~  183 (186)
T d1f6ba_         160 PLEVFMCSVLKRQGYGEGFRWMAQ  183 (186)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHH
Confidence            357899999999999999998765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=4.8e-05  Score=54.53  Aligned_cols=59  Identities=12%  Similarity=-0.004  Sum_probs=35.3

Q ss_pred             CCCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHH
Q psy7275           3 DTGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLI   82 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I   82 (150)
                      ....|+|+|.||.|+........     +   ++..        +       ..  ..+++++.+||++|+|++++|..|
T Consensus       109 ~~~~~iilv~~k~D~~~~~~~~~-----~---~~~~--------~-------~~--~~~~~~~e~Sa~~g~gv~e~f~~l  163 (173)
T d2fu5c1         109 SADVEKMILGNKCDVNDKRQVSK-----E---RGEK--------L-------AL--DYGIKFMETSAKANINVENAFFTL  163 (173)
T ss_dssp             CTTCEEEEEEEC--CCSCCCSCH-----H---HHHH--------H-------HH--HHTCEEEECCC---CCHHHHHHHH
T ss_pred             cCCceEEEEEecccchhhcccHH-----H---HHHH--------H-------HH--hcCCEEEEEeCCCCCCHHHHHHHH
Confidence            45689999999999876433211     0   1110        0       00  125789999999999999999888


Q ss_pred             HHHH
Q psy7275          83 KLAG   86 (150)
Q Consensus        83 ~e~~   86 (150)
                      ...+
T Consensus       164 ~~~i  167 (173)
T d2fu5c1         164 ARDI  167 (173)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7655

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=1.8e-05  Score=57.66  Aligned_cols=26  Identities=15%  Similarity=0.312  Sum_probs=22.0

Q ss_pred             CCcEEEeecCCCC-CHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGE-GTEELLQLIKLAG   86 (150)
Q Consensus        61 ~l~vv~VSA~TGe-GideL~~~I~e~~   86 (150)
                      ...++.+||++|. |++++|+.+...+
T Consensus       150 ~~~y~E~SAk~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         150 AATYIECSALQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence            4688999999998 6999999887654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=9.4e-05  Score=53.09  Aligned_cols=58  Identities=10%  Similarity=-0.031  Sum_probs=38.5

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|++++.||.|........+      ...+..           +       +  .++.++.+||+||+|++++++.+.
T Consensus       112 ~~~~i~~~~nk~d~~~~~v~~~------~~~~~~-----------~-------~--~~~~~~e~Sa~tg~gv~e~f~~l~  165 (177)
T d1x3sa1         112 NDIVNMLVGNKIDKENREVDRN------EGLKFA-----------R-------K--HSMLFIEASAKTCDGVQCAFEELV  165 (177)
T ss_dssp             SCCEEEEEEECTTSSSCCSCHH------HHHHHH-----------H-------H--TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cceeeEEEeeccccccccccHH------HHHHHH-----------H-------H--CCCEEEEEeCCCCCCHHHHHHHHH
Confidence            4578999999999765432110      011111           0       1  246899999999999999998776


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+-
T Consensus       166 ~~l~  169 (177)
T d1x3sa1         166 EKII  169 (177)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            6543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=0.00016  Score=51.13  Aligned_cols=58  Identities=10%  Similarity=-0.002  Sum_probs=39.9

Q ss_pred             CCCCEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHHHH
Q psy7275           4 TGFPYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQLIK   83 (150)
Q Consensus         4 ~~lP~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~I~   83 (150)
                      ...|+|++.||.|+.+.....+-.       ..+                 . . ..+++++.+||++|+|+++++..|.
T Consensus       106 ~~~~~i~~~~k~d~~~~~~~~~~~-------~~~-----------------~-~-~~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_         106 DEAQLLLVGNKSDMETRVVTADQG-------EAL-----------------A-K-ELGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             TTCEEEEEEECTTCTTCCSCHHHH-------HHH-----------------H-H-HHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CcceeeeecchhhhhhhhhhHHHH-------HHH-----------------H-H-hcCCeEEEECCCCCCCHHHHHHHHH
Confidence            457899999999986544321100       000                 0 1 1257999999999999999999888


Q ss_pred             HHHH
Q psy7275          84 LAGE   87 (150)
Q Consensus        84 e~~~   87 (150)
                      +.+.
T Consensus       160 ~~i~  163 (166)
T d1g16a_         160 KLIQ  163 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.46  E-value=2e-05  Score=61.31  Aligned_cols=66  Identities=12%  Similarity=0.241  Sum_probs=35.6

Q ss_pred             CCCC-EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHHHHHH
Q psy7275           4 TGFP-YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEELLQL   81 (150)
Q Consensus         4 ~~lP-~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGideL~~~   81 (150)
                      .++| +|+++||+|+.+.++..+   .|+.+.+.+.   .+    ...+. . ..+...+++|||||++|+|+.++.+.
T Consensus       160 ~~i~~iiv~iNKmD~~~~~~~e~---~~~ei~~~l~---~~----l~~i~-~-~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         160 QGINHLVVVINKMDEPSVQWSEE---RYKECVDKLS---MF----LRRVA-G-YNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             TTCSSEEEEEECTTSTTCSSCHH---HHHHHHHHHH---HH----HHHHH-C-CCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             cCCCeEEEEEEcCCCCccchhHH---HHHHHHHHHH---HH----HHHHh-C-cCcccCCEEEEeeccCCCCcccchhc
Confidence            4566 679999999986554321   1121222211   11    11100 0 00112468999999999999876543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=7.9e-05  Score=54.24  Aligned_cols=27  Identities=7%  Similarity=-0.010  Sum_probs=22.5

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKLAGE   87 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e~~~   87 (150)
                      +.+++.+||++|.|++++|..+.+.+.
T Consensus       140 ~~~~~e~SAk~~~~v~~~F~~l~~~i~  166 (175)
T d2bmja1         140 RCSYYETCATYGLNVDRVFQEVAQKVV  166 (175)
T ss_dssp             TEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             CCeEEEeCCCCCcCHHHHHHHHHHHHH
Confidence            458899999999999999887766553

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=5.5e-05  Score=53.80  Aligned_cols=24  Identities=21%  Similarity=0.185  Sum_probs=21.3

Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSGEGTEELLQLIKL   84 (150)
Q Consensus        61 ~l~vv~VSA~TGeGideL~~~I~e   84 (150)
                      +.+++.+||++|.|++++|..|.+
T Consensus       142 ~~~~~e~Sak~g~gV~e~F~~i~~  165 (170)
T d1ek0a_         142 GLLFFETSAKTGENVNDVFLGIGE  165 (170)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHHHT
T ss_pred             CCEEEEecCCCCcCHHHHHHHHHH
Confidence            468999999999999999998754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.42  E-value=2.6e-05  Score=58.77  Aligned_cols=24  Identities=13%  Similarity=0.223  Sum_probs=19.7

Q ss_pred             CCcEEEeecCCC----------CCHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVSG----------EGTEELLQLIKL   84 (150)
Q Consensus        61 ~l~vv~VSA~TG----------eGideL~~~I~e   84 (150)
                      .++++++||++|          .|+.+|+++|.+
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            368999999999          588888887755

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.12  E-value=0.00016  Score=55.37  Aligned_cols=15  Identities=20%  Similarity=0.421  Sum_probs=13.2

Q ss_pred             CcEEEeecCCCCCHH
Q psy7275          62 LKVVGFSSVSGEGTE   76 (150)
Q Consensus        62 l~vv~VSA~TGeGid   76 (150)
                      +++|||||.+|.|+.
T Consensus       183 i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         183 MAFVPMSALKGDNVV  197 (222)
T ss_dssp             EEEEECCTTTCTTTS
T ss_pred             eEEEEEEcccCccCC
Confidence            578999999999983

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00031  Score=51.26  Aligned_cols=20  Identities=15%  Similarity=-0.085  Sum_probs=15.6

Q ss_pred             CCCCCEEEeeecCCCCCchh
Q psy7275           3 DTGFPYTELVVGIDIVNHKY   22 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~   22 (150)
                      +.+.|+|+|.||+|+.++..
T Consensus       106 ~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1         106 KNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             TTCCEEEEEEECTTSTTCCC
T ss_pred             hcCCcEEEEEECcccCCCCC
Confidence            34679999999999976543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00068  Score=52.21  Aligned_cols=55  Identities=24%  Similarity=0.212  Sum_probs=31.9

Q ss_pred             CCCC-EEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhc---CCcEEEeecCCCCCHHH
Q psy7275           4 TGFP-YTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYS---TLKVVGFSSVSGEGTEE   77 (150)
Q Consensus         4 ~~lP-~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~---~l~vv~VSA~TGeGide   77 (150)
                      .++| +|+++||+|+.+.++.        .|.+....           +...+..+..   .++++++||.+|.|+-+
T Consensus       142 ~gv~~iiv~iNKmD~~~~d~~--------~~~~~~~e-----------l~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         142 LGVRQLIVAVNKMDSVKWDES--------RFQEIVKE-----------TSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TTCCEEEEEEECGGGGTTCHH--------HHHHHHHH-----------HHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             cCCCeEEEEEECCCCCCCCHH--------HHHHHHHH-----------HHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            5676 6788999998765542        12221110           1111222221   36889999999999743

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=4.5e-05  Score=54.93  Aligned_cols=25  Identities=12%  Similarity=-0.041  Sum_probs=21.1

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      +-+..+||++|++++++|++|.+.+
T Consensus       170 iy~~~TsA~d~~ni~~vf~~v~d~i  194 (200)
T d1zcba2         170 LYHHFTTAINTENIRLVFRDVKDTI  194 (200)
T ss_dssp             CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             eEEEEeeeeCcHHHHHHHHHHHHHH
Confidence            4456789999999999999998765

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.47  E-value=0.00098  Score=50.14  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=31.1

Q ss_pred             CEEEeeecCCCCCchhhHHHhhcHHHHHHHHhhchhhhhhhHHHHHHHHHHhhcCCcEEEeecCCCCCHHH
Q psy7275           7 PYTELVVGIDIVNHKYAIEWMQDFEVFQEALEADSSYISNLTRSMSLALDEFYSTLKVVGFSSVSGEGTEE   77 (150)
Q Consensus         7 P~IlV~NKiDl~~~~~~~ewm~D~e~f~eal~~e~~y~~~L~~slsl~l~efy~~l~vv~VSA~TGeGide   77 (150)
                      |+|+++||+|+..+++.....   +.....+.       .+....    ...-..+++++|||.+|.|+.+
T Consensus       143 ~iIv~iNK~D~~~~~~~~~~~---~~v~~~i~-------~~~~~~----~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         143 QLIVAVNKMDLTEPPYDEKRY---KEIVDQVS-------KFMRSY----GFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TCEEEEECGGGSSSTTCHHHH---HHHHHHHH-------HHHHHT----TCCCTTCEEEECBTTTTBTTTB
T ss_pred             ceEEEEEcccCCCccccHHHH---HHHHHHHH-------hHHHhc----CCCcccCeEEEEEccCCCCccc
Confidence            588889999998765432211   11111111       010000    0011346889999999999853

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.0007  Score=47.99  Aligned_cols=25  Identities=8%  Similarity=-0.109  Sum_probs=21.4

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      +.++.+||++|+|++++|++|.+.+
T Consensus       170 ~~~~~tSAk~~~ni~~vF~~i~~~I  194 (200)
T d2bcjq2         170 IYSHFTCATDTENIRFVFAAVKDTI  194 (200)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             eEEEEeEEEcCHhHHHHHHHHHHHH
Confidence            3467889999999999999997765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.06  E-value=0.00056  Score=51.20  Aligned_cols=31  Identities=10%  Similarity=-0.091  Sum_probs=23.6

Q ss_pred             cEEEeecCCCCCHHHHHHHHHHHH-HHHHhhh
Q psy7275          63 KVVGFSSVSGEGTEELLQLIKLAG-EDYEKNY   93 (150)
Q Consensus        63 ~vv~VSA~TGeGideL~~~I~e~~-~ey~~~y   93 (150)
                      -+..+||..+.++..++++|.+.+ .+..+.|
T Consensus       190 y~h~T~A~Dt~ni~~vf~~v~d~I~~~~l~~~  221 (221)
T d1azta2         190 YPHFTCAVDTENIRRVFNDCRDIIQRMHLRQY  221 (221)
T ss_dssp             EEEECCTTCHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred             eeeecceeccHHHHHHHHHHHHHHHHHHhhcC
Confidence            345789999999999999998755 5554443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.91  E-value=0.014  Score=45.95  Aligned_cols=24  Identities=21%  Similarity=0.102  Sum_probs=21.6

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      +|++..||.++.|+.+|++.|.+.
T Consensus       250 ~PV~~GSA~~n~GV~~LLD~i~~~  273 (276)
T d2bv3a2         250 TPVFLGSALKNKGVQLLLDAVVDY  273 (276)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEEeECCCCcCHHHHHHHHHHh
Confidence            589999999999999999998764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.57  E-value=0.009  Score=44.25  Aligned_cols=19  Identities=21%  Similarity=0.503  Sum_probs=14.2

Q ss_pred             CCCCC-EEEeeecCCCCCch
Q psy7275           3 DTGFP-YTELVVGIDIVNHK   21 (150)
Q Consensus         3 k~~lP-~IlV~NKiDl~~~~   21 (150)
                      ..++| +|+++||+|+.+.+
T Consensus       117 ~~gi~~iiv~iNK~D~~~~~  136 (204)
T d2c78a3         117 QVGVPYIVVFMNKVDMVDDP  136 (204)
T ss_dssp             HTTCCCEEEEEECGGGCCCH
T ss_pred             HcCCCeEEEEEEecccCCCH
Confidence            45777 56779999987643

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.49  E-value=0.0021  Score=45.20  Aligned_cols=25  Identities=0%  Similarity=-0.136  Sum_probs=21.4

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLAG   86 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~~   86 (150)
                      +.++.+||++|+|++++|+.|.+.+
T Consensus       167 ~~~~~tSA~~~~nv~~~F~~v~~~i  191 (195)
T d1svsa1         167 IYTHFTCATDTKNVQFVFDAVTDVI  191 (195)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEeECCHhHHHHHHHHHHHH
Confidence            3566799999999999999998765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.0087  Score=42.60  Aligned_cols=20  Identities=5%  Similarity=0.069  Sum_probs=16.1

Q ss_pred             CCCCCEEEeeecCCCCCchh
Q psy7275           3 DTGFPYTELVVGIDIVNHKY   22 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~~~~   22 (150)
                      ..++|+|+|+||+|+.+...
T Consensus       109 ~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_         109 ENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             TTCCCEEEEEECTTSTTCCC
T ss_pred             hccCCeEEEEEeecccccCc
Confidence            35789999999999976543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.23  E-value=0.01  Score=46.38  Aligned_cols=24  Identities=33%  Similarity=0.164  Sum_probs=21.1

Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHH
Q psy7275          62 LKVVGFSSVSGEGTEELLQLIKLA   85 (150)
Q Consensus        62 l~vv~VSA~TGeGideL~~~I~e~   85 (150)
                      +|++.-||.++.|+.+|++.|.+.
T Consensus       241 ~PV~~GSA~~n~GV~~LLd~i~~~  264 (267)
T d2dy1a2         241 YPVALASGEREIGVLPLLELILEA  264 (267)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEeCcCCCCcCHHHHHHHHHHh
Confidence            478888999999999999998764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.43  E-value=0.045  Score=44.41  Aligned_cols=29  Identities=10%  Similarity=-0.061  Sum_probs=21.9

Q ss_pred             CCcEEEeecCC--CCCHHHHHHHHHHHHHHH
Q psy7275          61 TLKVVGFSSVS--GEGTEELLQLIKLAGEDY   89 (150)
Q Consensus        61 ~l~vv~VSA~T--GeGideL~~~I~e~~~ey   89 (150)
                      .-+++.||+..  ..|+++|.+.+.+.+.+.
T Consensus       211 ~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         211 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             SCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            44788889765  458999999998877544

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.79  E-value=0.23  Score=39.66  Aligned_cols=17  Identities=6%  Similarity=-0.027  Sum_probs=14.2

Q ss_pred             CCCCCEEEeeecCCCCC
Q psy7275           3 DTGFPYTELVVGIDIVN   19 (150)
Q Consensus         3 k~~lP~IlV~NKiDl~~   19 (150)
                      +.++|.|+|+||+|...
T Consensus       146 ~~~~p~i~viNKiDr~~  162 (341)
T d1n0ua2         146 GERIKPVVVINKVDRAL  162 (341)
T ss_dssp             HTTCEEEEEEECHHHHH
T ss_pred             HcCCCeEEEEECccccc
Confidence            46799999999999643