Psyllid ID: psy7364

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFD
Secondary Structure (PSIPRED)
ccccccEEEEEEEccccccccccccccEEEEEccccEEEEEEEEccccccEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEccccccHHHHHHcccEEEEcHHHcEEEEcccccHHHHHHHHHHcHHHHHHccHccccccc
Coil and Loop (DISEMBL)
mhryqprihlikwrdqgtpitdleleqyrtyvfpesVFTAVTAYQNQLITKlkidsnpfakgfrdssrltdfd
Flexible Loop (DISEMBL)
mhryqprihlikwrdqgtpiTDLELEQYRTYVFPESVFTAVTAYQNQLItklkidsnpfakgfrdssrltdfd
Low Complexity Region (SEG)
MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFD
Disordered region (IsUnstruct)
******RIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDS*****************
Disordered Region (DISOPRED)
MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGF**********
Disordered Region (DISEMBL)
MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRD********
Disordered Region (DISPRO)
**RYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRD********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLTDFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
Q9ES03	445	T-box transcription facto	no	N/A	1.0	0.164	0.712	6e-27
Q9UMR3	447	T-box transcription facto	no	N/A	1.0	0.163	0.712	7e-27
Q8UW76	440	T-box transcription facto	yes	N/A	1.0	0.165	0.712	7e-27
Q8AXW8	441	T-box transcription facto	N/A	N/A	1.0	0.165	0.698	1e-25
Q3SA46	440	T-box transcription facto	yes	N/A	1.0	0.165	0.698	1e-25
Q9I9K7	446	T-box transcription facto	yes	N/A	1.0	0.163	0.698	1e-25
Q94890	660	T-box protein H15 OS=Dros	no	N/A	1.0	0.110	0.723	9e-25
Q9EPZ6	613	T-box transcription facto	no	N/A	0.917	0.109	0.569	4e-17
O95935	607	T-box transcription facto	no	N/A	0.917	0.110	0.569	5e-17
Q863A2	712	T-box transcription facto	no	N/A	0.849	0.087	0.606	7e-17

>sp|Q9ES03|TBX20_MOUSE T-box transcription factor TBX20 OS=Mus musculus GN=Tbx20 PE=2 SV=3

 Score =  119 bits (297), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 65/73 (89%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR+H+IK +D    + +L+ E++RT++FPE+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct: 223 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSNPFA 282

Query: 61  KGFRDSSRLTDFD 73
           KGFRDSSRLTD +
Sbjct: 283 KGFRDSSRLTDIE 295

Probable transcriptional regulator involved in developmental processes.
Mus musculus (taxid: 10090)

>sp|Q9UMR3|TBX20_HUMAN T-box transcription factor TBX20 OS=Homo sapiens GN=TBX20 PE=1 SV=4

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 65/73 (89%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR+H+IK +D    + +L+ E++RT++FPE+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct: 224 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSNPFA 283

Query: 61  KGFRDSSRLTDFD 73
           KGFRDSSRLTD +
Sbjct: 284 KGFRDSSRLTDIE 296

Probable transcriptional regulator involved in developmental processes.

Homo sapiens (taxid: 9606)

>sp|Q8UW76|TBX20_CHICK T-box transcription factor TBX20 OS=Gallus gallus GN=TBX20 PE=2 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 52/73 (71%), Positives = 65/73 (89%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR+H+IK +D    + +L+ E++RT++FPE+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct: 218 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSNPFA 277

Query: 61  KGFRDSSRLTDFD 73
           KGFRDSSRLTD +
Sbjct: 278 KGFRDSSRLTDIE 290

Probable transcriptional regulator involved in developmental processes.

Gallus gallus (taxid: 9031)

>sp|Q8AXW8|TBX20_XENLA T-box transcription factor TBX20 OS=Xenopus laevis GN=tbx20 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR+H+IK +D    + +L+ E++RT++F E+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct: 218 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFQETVFTAVTAYQNQLITKLKIDSNPFA 277

Query: 61  KGFRDSSRLTDFD 73
           KGFRDSSRLTD +
Sbjct: 278 KGFRDSSRLTDIE 290

Probable transcriptional regulator involved in developmental processes.

Xenopus laevis (taxid: 8355)

>sp|Q3SA46|TBX20_XENTR T-box transcription factor TBX20 OS=Xenopus tropicalis GN=tbx20 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR+H+IK +D    + +L+ E++RT++F E+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct: 218 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFQETVFTAVTAYQNQLITKLKIDSNPFA 277

Query: 61  KGFRDSSRLTDFD 73
           KGFRDSSRLTD +
Sbjct: 278 KGFRDSSRLTDIE 290

Probable transcriptional regulator involved in developmental processes.

Xenopus tropicalis (taxid: 8364)

>sp|Q9I9K7|TBX20_DANRE T-box transcription factor TBX20 OS=Danio rerio GN=tbx20 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 64/73 (87%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR+H+IK +D    + +L+ E++RT+VF E+VFTAVTAYQNQLIT+LKIDSNPFA
Sbjct: 223 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFVFTETVFTAVTAYQNQLITRLKIDSNPFA 282

Query: 61  KGFRDSSRLTDFD 73
           KGFRDSSRLTD +
Sbjct: 283 KGFRDSSRLTDIE 295

May play a very early role in the differentiation of the cardiac precursors.

Danio rerio (taxid: 7955)

>sp|Q94890|H15_DROME T-box protein H15 OS=Drosophila melanogaster GN=H15 PE=2 SV=2

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 55/76 (72%), Positives = 64/76 (84%), Gaps = 3/76 (3%)

Query: 1   MHRYQPRIHLIKW-RDQGTPITDLELEQ--YRTYVFPESVFTAVTAYQNQLITKLKIDSN 57
           MHRYQPRIHL++    Q  P +  EL+   ++T+VFPE+VFTAVTAYQNQLITKLKIDSN
Sbjct: 405 MHRYQPRIHLVRLSHGQSIPGSPKELQDMDHKTFVFPETVFTAVTAYQNQLITKLKIDSN 464

Query: 58  PFAKGFRDSSRLTDFD 73
           PFAKGFRDSSRL+DFD
Sbjct: 465 PFAKGFRDSSRLSDFD 480

Drosophila melanogaster (taxid: 7227)

>sp|Q9EPZ6|TBX18_MOUSE T-box transcription factor TBX18 OS=Mus musculus GN=Tbx18 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%), Gaps = 5/72 (6%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLEL----EQYRTYVFPESVFTAVTAYQNQLITKLKIDS 56
           MH+YQPR+H+I+ +D G  ++ ++     E  + + FPE+VFT VTAYQNQ IT+LKID 
Sbjct: 269 MHKYQPRVHVIR-KDCGDDLSPIKPVPSGEGVKAFSFPETVFTTVTAYQNQQITRLKIDR 327

Query: 57  NPFAKGFRDSSR 68
           NPFAKGFRDS R
Sbjct: 328 NPFAKGFRDSGR 339

Probable transcriptional regulator involved in developmental processes.

Mus musculus (taxid: 10090)

>sp|O95935|TBX18_HUMAN T-box transcription factor TBX18 OS=Homo sapiens GN=TBX18 PE=2 SV=3

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%), Gaps = 5/72 (6%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLEL----EQYRTYVFPESVFTAVTAYQNQLITKLKIDS 56
           MH+YQPR+H+I+ +D G  ++ ++     E  + + FPE+VFT VTAYQNQ IT+LKID 
Sbjct: 263 MHKYQPRVHVIR-KDCGDDLSPIKPVPSGEGVKAFSFPETVFTTVTAYQNQQITRLKIDR 321

Query: 57  NPFAKGFRDSSR 68
           NPFAKGFRDS R
Sbjct: 322 NPFAKGFRDSGR 333

Probable transcriptional regulator involved in developmental processes.

Homo sapiens (taxid: 9606)

>sp|Q863A2|TBX2_CANFA T-box transcription factor TBX2 OS=Canis familiaris GN=TBX2 PE=3 SV=2

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 4/66 (6%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR H+++  D    I  L    +RTYVFPE+ F AVTAYQN  IT+LKID+NPFA
Sbjct: 227 MHKYQPRFHIVRAND----ILKLPYSTFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFA 282

Query: 61  KGFRDS 66
           KGFRD+
Sbjct: 283 KGFRDT 288

Involved in the transcriptional regulation of genes required for mesoderm differentiation. Probably plays a role in limb pattern formation.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
91082919	594	PREDICTED: similar to GA19742-PA [Tribol	1.0	0.122	0.876	4e-32
270008163	371	H15 [Tribolium castaneum]	1.0	0.196	0.876	4e-32
242007804	371	T-box protein H15, putative [Pediculus h	1.0	0.196	0.863	4e-31
357611650	309	putative T-box protein H15 [Danaus plexi	1.0	0.236	0.863	2e-30
345483566	422	PREDICTED: T-box transcription factor TB	1.0	0.172	0.797	2e-28
383863845	506	PREDICTED: uncharacterized protein LOC10	1.0	0.144	0.8	6e-28
328791144	621	PREDICTED: hypothetical protein LOC72665	1.0	0.117	0.786	3e-27
350417451	502	PREDICTED: T-box transcription factor TB	1.0	0.145	0.773	3e-27
321461080	256	hypothetical protein DAPPUDRAFT_59354 [D	1.0	0.285	0.8	4e-27
46518310	556	T-box protein H15-2 [Achaearanea tepidar	1.0	0.131	0.797	9e-27

>gi|91082919|ref|XP_972670.1| PREDICTED: similar to GA19742-PA [Tribolium castaneum]

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/73 (87%), Positives = 69/73 (94%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MHRYQPRIH++KWR+   PITDLE EQYRT++FPESVFTAVTAYQNQLITKLKIDSNPFA
Sbjct: 336 MHRYQPRIHIVKWREHSGPITDLEQEQYRTFIFPESVFTAVTAYQNQLITKLKIDSNPFA 395

Query: 61  KGFRDSSRLTDFD 73
           KGFRDSSRLTDFD
Sbjct: 396 KGFRDSSRLTDFD 408

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008163|gb|EFA04611.1| H15 [Tribolium castaneum]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 69/73 (94%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MHRYQPRIH++KWR+   PITDLE EQYRT++FPESVFTAVTAYQNQLITKLKIDSNPFA
Sbjct: 113 MHRYQPRIHIVKWREHSGPITDLEQEQYRTFIFPESVFTAVTAYQNQLITKLKIDSNPFA 172

Query: 61  KGFRDSSRLTDFD 73
           KGFRDSSRLTDFD
Sbjct: 173 KGFRDSSRLTDFD 185

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007804|ref|XP_002424711.1| T-box protein H15, putative [Pediculus humanus corporis] gi|212508204|gb|EEB11973.1| T-box protein H15, putative [Pediculus humanus corporis]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MHRYQPRIHL+KWR+ G  I DL+ E+YRTY+FPESVFTAVTAYQNQLITKLKIDSNPFA
Sbjct: 96  MHRYQPRIHLVKWREHGGSILDLDSEEYRTYIFPESVFTAVTAYQNQLITKLKIDSNPFA 155

Query: 61  KGFRDSSRLTDFD 73
           KGFRDSSRLTDFD
Sbjct: 156 KGFRDSSRLTDFD 168

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611650|gb|EHJ67587.1| putative T-box protein H15 [Danaus plexippus]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MHRYQPRIHL+K RD G PITDL  EQ+RT++FPE+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct: 133 MHRYQPRIHLVKVRDGGGPITDLSREQHRTFIFPETVFTAVTAYQNQLITKLKIDSNPFA 192

Query: 61  KGFRDSSRLTDFD 73
           KGFRDSSRLTDFD
Sbjct: 193 KGFRDSSRLTDFD 205

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483566|ref|XP_001602023.2| PREDICTED: T-box transcription factor TBX20-like [Nasonia vitripennis]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/74 (79%), Positives = 68/74 (91%), Gaps = 1/74 (1%)

Query: 1   MHRYQPRIHLIKWRDQG-TPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPF 59
           MHRYQPRIHL++ R+    PITDLE E+++T++FPES+FTAVTAYQNQLITKLKIDSNPF
Sbjct: 282 MHRYQPRIHLVRMRNNSNAPITDLEKEEHKTFIFPESIFTAVTAYQNQLITKLKIDSNPF 341

Query: 60  AKGFRDSSRLTDFD 73
           AKGFRDSSRLTDFD
Sbjct: 342 AKGFRDSSRLTDFD 355

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863845|ref|XP_003707390.1| PREDICTED: uncharacterized protein LOC100883566 [Megachile rotundata]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 68/75 (90%), Gaps = 2/75 (2%)

Query: 1   MHRYQPRIHLIKWRDQGT--PITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNP 58
           MH+YQPRIHL+K  D GT  PITDLE E ++T+VFPE++FTAVTAYQNQLITKLKIDSNP
Sbjct: 223 MHKYQPRIHLVKRPDSGTAKPITDLEKEPHKTFVFPEAIFTAVTAYQNQLITKLKIDSNP 282

Query: 59  FAKGFRDSSRLTDFD 73
           FAKGFRDSSRLTDF+
Sbjct: 283 FAKGFRDSSRLTDFE 297

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791144|ref|XP_003251524.1| PREDICTED: hypothetical protein LOC726654 [Apis mellifera]

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/75 (78%), Positives = 68/75 (90%), Gaps = 2/75 (2%)

Query: 1   MHRYQPRIHLIKWRDQGT--PITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNP 58
           MH+YQPRIHL+K  D GT  PITDLE E ++T++FPE++FTAVTAYQNQLITKLKIDSNP
Sbjct: 333 MHKYQPRIHLVKRPDSGTAKPITDLEKEPHKTFIFPEAIFTAVTAYQNQLITKLKIDSNP 392

Query: 59  FAKGFRDSSRLTDFD 73
           FAKGFRDSSRLTDF+
Sbjct: 393 FAKGFRDSSRLTDFE 407

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417451|ref|XP_003491428.1| PREDICTED: T-box transcription factor TBX20-like, partial [Bombus impatiens]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 68/75 (90%), Gaps = 2/75 (2%)

Query: 1   MHRYQPRIHLIKWRDQGT--PITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNP 58
           MH+YQPRIHL+K  + GT  PITDLE E ++T++FPE++FTAVTAYQNQLITKLKIDSNP
Sbjct: 244 MHKYQPRIHLVKRPESGTSKPITDLEKEPHKTFIFPEAIFTAVTAYQNQLITKLKIDSNP 303

Query: 59  FAKGFRDSSRLTDFD 73
           FAKGFRDSSRLTDF+
Sbjct: 304 FAKGFRDSSRLTDFE 318

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321461080|gb|EFX72115.1| hypothetical protein DAPPUDRAFT_59354 [Daphnia pulex]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 67/75 (89%), Gaps = 2/75 (2%)

Query: 1   MHRYQPRIHLIKWRDQGT--PITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNP 58
           MHRYQPR+HL++  +  T  PI DLE EQ+RTYVFPE+VFTAVTAYQNQLITKLKIDSNP
Sbjct: 181 MHRYQPRVHLVRRMEGDTTRPIVDLEREQFRTYVFPETVFTAVTAYQNQLITKLKIDSNP 240

Query: 59  FAKGFRDSSRLTDFD 73
           FAKGFRDSSRL+DFD
Sbjct: 241 FAKGFRDSSRLSDFD 255

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|46518310|dbj|BAD16721.1| T-box protein H15-2 [Achaearanea tepidariorum]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 59/74 (79%), Positives = 67/74 (90%), Gaps = 1/74 (1%)

Query: 1   MHRYQPRIHLIKWRDQGTP-ITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPF 59
           MH+YQPRIHL++ +  G+  ITDLE E+ RTYVFPE+VFTAVTAYQNQLITKLKIDSNPF
Sbjct: 268 MHKYQPRIHLVRRKQGGSSVITDLETEECRTYVFPETVFTAVTAYQNQLITKLKIDSNPF 327

Query: 60  AKGFRDSSRLTDFD 73
           AKGFRDSSRLT+FD
Sbjct: 328 AKGFRDSSRLTEFD 341

Source: Achaearanea tepidariorum

Species: Parasteatoda tepidariorum

Genus: Parasteatoda

Family: Theridiidae

Order: Araneae

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
UNIPROTKB|Q8UW76	440	TBX20 "T-box transcription fac	1.0	0.165	0.712	1.9e-25
MGI|MGI:1888496	445	Tbx20 "T-box 20" [Mus musculus	1.0	0.164	0.712	2.1e-25
RGD|1309396	446	Tbx20 "T-box 20" [Rattus norve	1.0	0.163	0.712	2.1e-25
UNIPROTKB|Q9UMR3	447	TBX20 "T-box transcription fac	1.0	0.163	0.712	2.2e-25
UNIPROTKB|J9JHY2	448	TBX20 "Uncharacterized protein	1.0	0.162	0.712	2.2e-25
UNIPROTKB|E1BGZ6	449	TBX20 "Uncharacterized protein	1.0	0.162	0.712	2.3e-25
UNIPROTKB|F1SIK8	449	TBX20 "Uncharacterized protein	1.0	0.162	0.712	2.3e-25
UNIPROTKB|Q8AXW8	441	tbx20 "T-box transcription fac	1.0	0.165	0.698	1.7e-24
ZFIN|ZDB-GENE-000427-7	447	tbx20 "T-box 20" [Danio rerio	1.0	0.163	0.698	3.2e-24
FB|FBgn0261963	580	mid "midline" [Drosophila mela	1.0	0.125	0.75	4.4e-24

UNIPROTKB|Q8UW76 TBX20 "T-box transcription factor TBX20" [Gallus gallus (taxid:9031)]

 Score = 290 (107.1 bits), Expect = 1.9e-25, P = 1.9e-25
 Identities = 52/73 (71%), Positives = 65/73 (89%)

Query:     1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
             MH+YQPR+H+IK +D    + +L+ E++RT++FPE+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct:   218 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSNPFA 277

Query:    61 KGFRDSSRLTDFD 73
             KGFRDSSRLTD +
Sbjct:   278 KGFRDSSRLTDIE 290

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0003175 "tricuspid valve development" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003193 "pulmonary valve formation" evidence=IEA

GO:0003207 "cardiac chamber formation" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003272 "endocardial cushion formation" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0021524 "visceral motor neuron differentiation" evidence=IEA

GO:0035922 "foramen ovale closure" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060577 "pulmonary vein morphogenesis" evidence=IEA

MGI|MGI:1888496 Tbx20 "T-box 20" [Mus musculus (taxid:10090)]

 Score = 290 (107.1 bits), Expect = 2.1e-25, P = 2.1e-25
 Identities = 52/73 (71%), Positives = 65/73 (89%)

Query:     1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
             MH+YQPR+H+IK +D    + +L+ E++RT++FPE+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct:   223 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSNPFA 282

Query:    61 KGFRDSSRLTDFD 73
             KGFRDSSRLTD +
Sbjct:   283 KGFRDSSRLTDIE 295

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IGI;IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=ISO;IDA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IPI

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IPI

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=ISO;IDA

GO:0001569 "patterning of blood vessels" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0003143 "embryonic heart tube morphogenesis" evidence=IMP

GO:0003148 "outflow tract septum morphogenesis" evidence=ISO;IMP

GO:0003151 "outflow tract morphogenesis" evidence=IMP

GO:0003175 "tricuspid valve development" evidence=IMP

GO:0003176 "aortic valve development" evidence=IMP

GO:0003180 "aortic valve morphogenesis" evidence=ISO

GO:0003193 "pulmonary valve formation" evidence=IMP

GO:0003203 "endocardial cushion morphogenesis" evidence=IMP

GO:0003207 "cardiac chamber formation" evidence=IMP

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IMP

GO:0003272 "endocardial cushion formation" evidence=IMP

GO:0003279 "cardiac septum development" evidence=IMP

GO:0003344 "pericardium morphogenesis" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006936 "muscle contraction" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008015 "blood circulation" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0010717 "regulation of epithelial to mesenchymal transition" evidence=NAS

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IDA

GO:0021524 "visceral motor neuron differentiation" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IGI;IMP

GO:0035922 "foramen ovale closure" evidence=ISO

GO:0036306 "embryonic heart tube elongation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IMP

GO:0060413 "atrial septum morphogenesis" evidence=ISO

GO:0060577 "pulmonary vein morphogenesis" evidence=ISO

RGD|1309396 Tbx20 "T-box 20" [Rattus norvegicus (taxid:10116)]

 Score = 290 (107.1 bits), Expect = 2.1e-25, P = 2.1e-25
 Identities = 52/73 (71%), Positives = 65/73 (89%)

Query:     1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
             MH+YQPR+H+IK +D    + +L+ E++RT++FPE+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct:   224 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSNPFA 283

Query:    61 KGFRDSSRLTDFD 73
             KGFRDSSRLTD +
Sbjct:   284 KGFRDSSRLTDIE 296

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=ISO

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISO

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISO

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=ISO

GO:0001569 "patterning of blood vessels" evidence=ISO

GO:0001764 "neuron migration" evidence=ISO

GO:0001947 "heart looping" evidence=ISO

GO:0003143 "embryonic heart tube morphogenesis" evidence=ISO

GO:0003148 "outflow tract septum morphogenesis" evidence=ISO

GO:0003151 "outflow tract morphogenesis" evidence=ISO

GO:0003175 "tricuspid valve development" evidence=ISO

GO:0003176 "aortic valve development" evidence=ISO

GO:0003180 "aortic valve morphogenesis" evidence=ISO

GO:0003193 "pulmonary valve formation" evidence=ISO

GO:0003203 "endocardial cushion morphogenesis" evidence=ISO

GO:0003207 "cardiac chamber formation" evidence=ISO

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISO

GO:0003272 "endocardial cushion formation" evidence=ISO

GO:0003279 "cardiac septum development" evidence=ISO

GO:0003344 "pericardium morphogenesis" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006936 "muscle contraction" evidence=ISO

GO:0008015 "blood circulation" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008283 "cell proliferation" evidence=ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=ISO

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=ISO

GO:0021524 "visceral motor neuron differentiation" evidence=ISO

GO:0035050 "embryonic heart tube development" evidence=ISO

GO:0035922 "foramen ovale closure" evidence=ISO

GO:0036306 "embryonic heart tube elongation" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=ISO

GO:0060413 "atrial septum morphogenesis" evidence=ISO

GO:0060577 "pulmonary vein morphogenesis" evidence=ISO

UNIPROTKB|Q9UMR3 TBX20 "T-box transcription factor TBX20" [Homo sapiens (taxid:9606)]

 Score = 290 (107.1 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 52/73 (71%), Positives = 65/73 (89%)

Query:     1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
             MH+YQPR+H+IK +D    + +L+ E++RT++FPE+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct:   224 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSNPFA 283

Query:    61 KGFRDSSRLTDFD 73
             KGFRDSSRLTD +
Sbjct:   284 KGFRDSSRLTDIE 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003143 "embryonic heart tube morphogenesis" evidence=ISS

GO:0003203 "endocardial cushion morphogenesis" evidence=ISS

GO:0003207 "cardiac chamber formation" evidence=ISS

GO:0003344 "pericardium morphogenesis" evidence=ISS

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0021524 "visceral motor neuron differentiation" evidence=ISS

GO:0003279 "cardiac septum development" evidence=ISS

GO:0003272 "endocardial cushion formation" evidence=ISS

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS

GO:0003193 "pulmonary valve formation" evidence=ISS

GO:0003175 "tricuspid valve development" evidence=ISS

GO:0001947 "heart looping" evidence=ISS

GO:0035922 "foramen ovale closure" evidence=IMP

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISS

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISS

GO:0048370 "lateral mesoderm formation" evidence=ISS

GO:0001706 "endoderm formation" evidence=ISS

GO:0060413 "atrial septum morphogenesis" evidence=IMP

GO:0003148 "outflow tract septum morphogenesis" evidence=IMP

GO:0003180 "aortic valve morphogenesis" evidence=IMP

GO:0060577 "pulmonary vein morphogenesis" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

UNIPROTKB|J9JHY2 TBX20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 52/73 (71%), Positives = 65/73 (89%)

Query:     1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
             MH+YQPR+H+IK +D    + +L+ E++RT++FPE+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct:   225 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSNPFA 284

Query:    61 KGFRDSSRLTDFD 73
             KGFRDSSRLTD +
Sbjct:   285 KGFRDSSRLTDIE 297

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E1BGZ6 TBX20 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 290 (107.1 bits), Expect = 2.3e-25, P = 2.3e-25
 Identities = 52/73 (71%), Positives = 65/73 (89%)

Query:     1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
             MH+YQPR+H+IK +D    + +L+ E++RT++FPE+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct:   226 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSNPFA 285

Query:    61 KGFRDSSRLTDFD 73
             KGFRDSSRLTD +
Sbjct:   286 KGFRDSSRLTDIE 298

GO:0060577 "pulmonary vein morphogenesis" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0035922 "foramen ovale closure" evidence=IEA

GO:0021524 "visceral motor neuron differentiation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0003272 "endocardial cushion formation" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003207 "cardiac chamber formation" evidence=IEA

GO:0003193 "pulmonary valve formation" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003175 "tricuspid valve development" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F1SIK8 TBX20 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 290 (107.1 bits), Expect = 2.3e-25, P = 2.3e-25
 Identities = 52/73 (71%), Positives = 65/73 (89%)

Query:     1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
             MH+YQPR+H+IK +D    + +L+ E++RT++FPE+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct:   226 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSNPFA 285

Query:    61 KGFRDSSRLTDFD 73
             KGFRDSSRLTD +
Sbjct:   286 KGFRDSSRLTDIE 298

GO:0060577 "pulmonary vein morphogenesis" evidence=IEA

GO:0060413 "atrial septum morphogenesis" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0036306 "embryonic heart tube elongation" evidence=IEA

GO:0035922 "foramen ovale closure" evidence=IEA

GO:0021524 "visceral motor neuron differentiation" evidence=IEA

GO:0010991 "negative regulation of SMAD protein complex assembly" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0003272 "endocardial cushion formation" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003207 "cardiac chamber formation" evidence=IEA

GO:0003193 "pulmonary valve formation" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0003175 "tricuspid valve development" evidence=IEA

GO:0003148 "outflow tract septum morphogenesis" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IEA

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|Q8AXW8 tbx20 "T-box transcription factor TBX20" [Xenopus laevis (taxid:8355)]

 Score = 282 (104.3 bits), Expect = 1.7e-24, P = 1.7e-24
 Identities = 51/73 (69%), Positives = 64/73 (87%)

Query:     1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
             MH+YQPR+H+IK +D    + +L+ E++RT++F E+VFTAVTAYQNQLITKLKIDSNPFA
Sbjct:   218 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFQETVFTAVTAYQNQLITKLKIDSNPFA 277

Query:    61 KGFRDSSRLTDFD 73
             KGFRDSSRLTD +
Sbjct:   278 KGFRDSSRLTDIE 290

GO:0000578 "embryonic axis specification" evidence=IMP

GO:0001706 "endoderm formation" evidence=IMP

GO:0048370 "lateral mesoderm formation" evidence=IMP

ZFIN|ZDB-GENE-000427-7 tbx20 "T-box 20" [Danio rerio (taxid:7955)]

 Score = 280 (103.6 bits), Expect = 3.2e-24, P = 3.2e-24
 Identities = 51/73 (69%), Positives = 64/73 (87%)

Query:     1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
             MH+YQPR+H+IK +D    + +L+ E++RT+VF E+VFTAVTAYQNQLIT+LKIDSNPFA
Sbjct:   223 MHKYQPRVHIIKKKDHTASLLNLKSEEFRTFVFTETVFTAVTAYQNQLITRLKIDSNPFA 282

Query:    61 KGFRDSSRLTDFD 73
             KGFRDSSRLTD +
Sbjct:   283 KGFRDSSRLTDIE 295

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007507 "heart development" evidence=IEP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0001570 "vasculogenesis" evidence=IMP

GO:0001568 "blood vessel development" evidence=IMP

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0035844 "cloaca development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

FB|FBgn0261963 mid "midline" [Drosophila melanogaster (taxid:7227)]

 Score = 283 (104.7 bits), Expect = 4.4e-24, P = 4.4e-24
 Identities = 57/76 (75%), Positives = 63/76 (82%)

Query:     1 MHRYQPRIHLIKW-RDQGTPITDLELEQ--YRTYVFPESVFTAVTAYQNQLITKLKIDSN 57
             MHRYQPRIHL++    Q  P    EL+   ++TYVFPE+VFTAVTAYQNQLITKLKIDSN
Sbjct:   314 MHRYQPRIHLVRLSHGQSIPSNPKELQDLDHKTYVFPETVFTAVTAYQNQLITKLKIDSN 373

Query:    58 PFAKGFRDSSRLTDFD 73
             PFAKGFRDSSRLTDFD
Sbjct:   374 PFAKGFRDSSRLTDFD 389

GO:0007367 "segment polarity determination" evidence=IMP

GO:0007409 "axonogenesis" evidence=NAS;IMP

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007399 "nervous system development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0042684 "cardioblast cell fate commitment" evidence=IMP

GO:0051890 "regulation of cardioblast differentiation" evidence=IMP

GO:0014019 "neuroblast development" evidence=IMP

GO:0014018 "neuroblast fate specification" evidence=IMP

GO:0003015 "heart process" evidence=IDA

GO:0048665 "neuron fate specification" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0007402 "ganglion mother cell fate determination" evidence=IMP

GO:0051960 "regulation of nervous system development" evidence=IMP

GO:0007417 "central nervous system development" evidence=IGI;IMP

GO:0010629 "negative regulation of gene expression" evidence=IGI;IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0042659 "regulation of cell fate specification" evidence=IGI

GO:0035223 "leg disc pattern formation" evidence=IGI

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0001226 "RNA polymerase II transcription corepressor binding" evidence=IPI

GO:0001227 "RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA;IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SA46	TBX20_XENTR	No assigned EC number	0.6986	1.0	0.1659	yes	N/A
Q9I9K7	TBX20_DANRE	No assigned EC number	0.6986	1.0	0.1636	yes	N/A
P90971	TBX12_CAEEL	No assigned EC number	0.5942	0.8767	0.1849	yes	N/A
Q8UW76	TBX20_CHICK	No assigned EC number	0.7123	1.0	0.1659	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	73
cd00182	188	cd00182, TBOX, T-box DNA binding domain of the T-b	6e-34
pfam00907	182	pfam00907, T-box, T-box	1e-30
smart00425	190	smart00425, TBOX, Domain first found in the mice T	6e-29

>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators

 Score =  113 bits (286), Expect = 6e-34
 Identities = 38/68 (55%), Positives = 49/68 (72%), Gaps = 4/68 (5%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR+H+++  D       L     +T+ FPE+ F AVTAYQNQ IT+LKID+NPFA
Sbjct: 124 MHKYQPRLHIVEVDDSSPFSWRL----VQTFSFPETEFIAVTAYQNQEITQLKIDNNPFA 179

Query: 61  KGFRDSSR 68
           KGFRD+ R
Sbjct: 180 KGFRDNGR 187

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors. Length = 188

>gnl|CDD|216184 pfam00907, T-box, T-box

 Score =  105 bits (263), Expect = 1e-30
 Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 5/66 (7%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR+H+++  D  +P         RT+ FPE+ F AVTAYQN+ ITKLKID+NPFA
Sbjct: 122 MHKYQPRLHIVR-VDDESPSQRT----VRTFSFPETQFIAVTAYQNEEITKLKIDNNPFA 176

Query: 61  KGFRDS 66
           KGFRD+
Sbjct: 177 KGFRDA 182

The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations. Length = 182

>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein

 Score =  101 bits (253), Expect = 6e-29
 Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 4/68 (5%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR+H+++  D    I    L Q++T+VFPE+ F AVTAYQNQ ITKLKID+NPFA
Sbjct: 125 MHKYQPRLHIVEVDDISKEI----LSQFKTFVFPETQFIAVTAYQNQKITKLKIDNNPFA 180

Query: 61  KGFRDSSR 68
           KGFRD  R
Sbjct: 181 KGFRDQGR 188

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
KOG3586|consensus	437		100.0
cd00182	188	TBOX T-box DNA binding domain of the T-box family	100.0
smart00425	190	TBOX Domain first found in the mice T locus (Brach	99.97
PF00907	184	T-box: T-box; InterPro: IPR001699 Transcription fa	99.95
KOG3585|consensus	328		99.95

>KOG3586|consensus

Probab=100.00  E-value=3.3e-36  Score=224.20  Aligned_cols=70  Identities=59%  Similarity=0.905  Sum_probs=62.0

Q ss_pred             CCcCccEEEEEEeCCCCCCcc-cccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCCCCCCC
Q psy7364           1 MHRYQPRIHLIKWRDQGTPIT-DLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRLT   70 (73)
Q Consensus         1 mHkY~P~lhi~~~~~~~~~~~-~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~~~~~~   70 (73)
                      |||||||+|||+++....... ....+.++||+||||+|+|||||||++||+|||++|||||||||+++++
T Consensus       204 MHkYQPRvHvV~~~~~~~s~~~~~~~e~~kTF~FpET~FtAVTAYQNq~ITkLKI~sNPFAKGFRD~~~~~  274 (437)
T KOG3586|consen  204 MHKYQPRVHVVYLDPGNDSNKYVEKNEGFKTFVFPETVFTAVTAYQNQRITKLKIESNPFAKGFRDCGRND  274 (437)
T ss_pred             ccccCCceEEEEecCCCCccccccccccceeEeccceeEEEEeecccceeeeeeeccCccccccccCCccC
Confidence            999999999999997754321 2245779999999999999999999999999999999999999999985

>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators

Probab=100.00  E-value=6.6e-35  Score=200.37  Aligned_cols=65  Identities=57%  Similarity=0.925  Sum_probs=58.5

Q ss_pred             CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCCCCCC
Q psy7364           1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRL   69 (73)
Q Consensus         1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~~~~~   69 (73)
                      ||||||||||+++++....    ....+++|.||||+|||||||||++||+|||++||||||||++++.
T Consensus       124 mhKY~Prl~I~~~~~~~~~----~~~~~~~f~F~eT~FiAVTaYqN~~It~lKi~~NpfAkgfr~~~~~  188 (188)
T cd00182         124 MHKYQPRLHIVEVDDSSPF----SWRLVQTFSFPETEFIAVTAYQNQEITQLKIDNNPFAKGFRDNGRS  188 (188)
T ss_pred             cceEEeEEEEEEcCCCccc----cccccEEEECCCeEEEEEEeecCHhHhhhhhcCCcccccccccCCC
Confidence            8999999999998875432    3467899999999999999999999999999999999999999863

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.

>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein

Probab=99.97  E-value=9.2e-33  Score=189.77  Aligned_cols=65  Identities=63%  Similarity=1.032  Sum_probs=58.1

Q ss_pred             CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCCCCCC
Q psy7364           1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRL   69 (73)
Q Consensus         1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~~~~~   69 (73)
                      ||||+|||||+++++....    ..+.+++|.||||+|||||||||++|++|||++||||||||++++.
T Consensus       125 mhkY~P~l~I~~~~~~~~~----~~~~~~~f~F~eT~FiaVTaYqN~~it~lKi~~NpfAkgfr~~~~~  189 (190)
T smart00425      125 MHKYQPRLHIVEVDDISKE----ILSQFKTFVFPETQFIAVTAYQNQKITKLKIDNNPFAKGFRDQGRR  189 (190)
T ss_pred             CceEeeEEEEEEeCCcccc----cccceeEEECCceEEEEEeeecccchhhccccCCCCcCccccccCC
Confidence            8999999999999875442    2356789999999999999999999999999999999999998764

>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []

Probab=99.95  E-value=8.1e-30  Score=172.17  Aligned_cols=63  Identities=52%  Similarity=0.914  Sum_probs=51.5

Q ss_pred             CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCCC
Q psy7364           1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDS   66 (73)
Q Consensus         1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~~   66 (73)
                      ||||+|||+|+++++.....   ....+.+|.||||+|||||+|||++|++|||++||||||||+.
T Consensus       122 ~hkY~Pvl~I~~~~~~~~~~---~~~~~~~f~f~~t~FIaVT~Yqn~~I~~lK~~~Npfak~fr~~  184 (184)
T PF00907_consen  122 MHKYQPVLHIYEVNSNGSPS---PNQPVHEFSFPETEFIAVTAYQNEEIRQLKIDNNPFAKGFRDK  184 (184)
T ss_dssp             TEEEEEEEEEEECTTTSCCC---SCSSEEEEE-GGG-EEEESS-SSHHHHHHHHHH-GGGGGGHH-
T ss_pred             ccEEEEEEEEEEcCCccccc---cccceEEeecCcCeEEeecccchhhhhhhhhccCCCccccCCC
Confidence            79999999999998764421   2357899999999999999999999999999999999999973

The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.

>KOG3585|consensus

Probab=99.95  E-value=3.7e-28  Score=177.82  Aligned_cols=65  Identities=52%  Similarity=0.804  Sum_probs=57.8

Q ss_pred             CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCCCCCC
Q psy7364           1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRL   69 (73)
Q Consensus         1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~~~~~   69 (73)
                      ||||+|||||+++++....    ....+++|.||||+|||||||||+.||+|||++||||||||+.+..
T Consensus       148 mHKY~P~l~i~~~~~~~~~----~~~~~~~~~F~eT~FIaVTaYQn~~it~lKi~~Npfakgfr~~~~~  212 (328)
T KOG3585|consen  148 MHKYQPVLHIVELDASLIS----PEISVQSFKFPETQFIAVTAYQNQEITKLKIDNNPFAKGFRDNIEG  212 (328)
T ss_pred             ccceeeeEEEEEcccccCC----CccceeEEEcccceeEEeeeeecceehhhcccCCcccccccccccc
Confidence            8999999999999733322    3457999999999999999999999999999999999999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	73
1h6f_A	193	Human Tbx3, A Transcription Factor Responsible For		4e-17
4a04_A	203	Structure Of The Dna-Bound T-Box Domain Of Human Tb		8e-15
2x6u_A	203	Crystal Structure Of Human Tbx5 In The Dna-Free For		3e-14
1xbr_A	184	T Domain From Xenopus Laevis Bound To Dna Length =		1e-10

>pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For Ulnar- Mammary Syndrome, Bound To A Palindromic Dna Site Length = 193

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 49/67 (73%), Gaps = 4/67 (5%)
Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR H+++  D    I  L    +RTY+FPE+ F AVTAYQN  IT+LKID+NPFA
Sbjct: 127 MHKYQPRFHIVRAND----ILKLPYSTFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFA 182
Query: 61  KGFRDSS 67
           KGFRD+ 
Sbjct: 183 KGFRDTG 189

>pdb|4A04|A Chain A, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A Transcription Factor Associated With The Digeorge Syndrome Length = 203

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MHRYQPR H++ + D          E ++T+VF E+ FTAVTAYQN  IT+LKI SNPFA
Sbjct: 140 MHRYQPRFHVV-YVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFA 198
Query: 61  KGFRD 65
           KGFRD
Sbjct: 199 KGFRD 203

>pdb|2X6U|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Free Form Length = 203

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR+H++K  D+       +   + T+VFPE+ F AVT+YQN  IT+LKI++NPFA
Sbjct: 128 MHKYQPRLHIVK-ADENNGFGS-KNTAFCTHVFPETAFIAVTSYQNHKITQLKIENNPFA 185
Query: 61  KGFRDS 66
           KGFR S
Sbjct: 186 KGFRGS 191

>pdb|1XBR|A Chain A, T Domain From Xenopus Laevis Bound To Dna Length = 184

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 8/66 (12%)
Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           +H+Y+PRIH+++       IT        ++ FPE+ F AVTAYQN+ IT LKI  NPFA
Sbjct: 123 LHKYEPRIHIVRVGGTQRMIT--------SHSFPETQFIAVTAYQNEEITALKIKHNPFA 174
Query: 61  KGFRDS 66
           K F D+
Sbjct: 175 KAFLDA 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	73
1h6f_A	193	T-box transcription factor TBX3; transcription fac	2e-22
4a04_A	203	T-box transcription factor TBX1; transcription, T-	3e-20
1xbr_A	184	Protein (T protein); complex (transcription factor	8e-20
2x6u_A	203	T-box transcription factor TBX5; developmental pro	9e-20

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Length = 193

 Score = 83.7 bits (206), Expect = 2e-22
 Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 4/68 (5%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR H+++  D    I  L    +RTY+FPE+ F AVTAYQN  IT+LKID+NPFA
Sbjct: 127 MHKYQPRFHIVRAND----ILKLPYSTFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFA 182

Query: 61  KGFRDSSR 68
           KGFRD+  
Sbjct: 183 KGFRDTGN 190

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203

 Score = 78.7 bits (193), Expect = 3e-20
 Identities = 37/65 (56%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MHRYQPR H++              E ++T+VF E+ FTAVTAYQN  IT+LKI SNPFA
Sbjct: 140 MHRYQPRFHVVYVDP-RKDSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFA 198

Query: 61  KGFRD 65
           KGFRD
Sbjct: 199 KGFRD 203

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Length = 184

 Score = 77.1 bits (189), Expect = 8e-20
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 8/68 (11%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           +H+Y+PRIH+++       I         ++ FPE+ F AVTAYQN+ IT LKI  NPFA
Sbjct: 123 LHKYEPRIHIVRVGGTQRMI--------TSHSFPETQFIAVTAYQNEEITALKIKHNPFA 174

Query: 61  KGFRDSSR 68
           K F D+  
Sbjct: 175 KAFLDAKE 182

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Length = 203

 Score = 77.5 bits (190), Expect = 9e-20
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR+H++K  +        +   + T+VFPE+ F AVT+YQN  IT+LKI++NPFA
Sbjct: 128 MHKYQPRLHIVKADENNGF--GSKNTAFCTHVFPETAFIAVTSYQNHKITQLKIENNPFA 185

Query: 61  KGFRDSSR 68
           KGFR S  
Sbjct: 186 KGFRGSDD 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	73
2x6u_A	203	T-box transcription factor TBX5; developmental pro	100.0
1h6f_A	193	T-box transcription factor TBX3; transcription fac	100.0
4a04_A	203	T-box transcription factor TBX1; transcription, T-	100.0
1xbr_A	184	Protein (T protein); complex (transcription factor	100.0

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*

Probab=100.00  E-value=7.5e-36  Score=205.78  Aligned_cols=67  Identities=51%  Similarity=0.848  Sum_probs=48.1

Q ss_pred             CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCCCCCC
Q psy7364           1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRL   69 (73)
Q Consensus         1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~~~~~   69 (73)
                      ||||||||||+++++....  ......+++|+||||+|||||||||++||||||++||||||||++++.
T Consensus       128 mHKYqPrlhIv~~~~~~~~--~~~~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NPFAkgFR~~~~~  194 (203)
T 2x6u_A          128 MHKYQPRLHIVKADENNGF--GSKNTAFCTHVFPETAFIAVTSYQNHKITQLKIENNPFAKGFRGSDDM  194 (203)
T ss_dssp             TEEEEEEEEEEECCTTSCS--SSSCCCEEEECCGGGCEEEESSCCSHHHHHHHHHHC------------
T ss_pred             CceEEEEEEEEEeCCcccc--CcCccceEEEEcCCcEEEEEeeecchhhhhhhhccCCCccccccCccc
Confidence            8999999999998765432  123467899999999999999999999999999999999999998754

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4

Probab=100.00  E-value=4e-36  Score=205.76  Aligned_cols=65  Identities=58%  Similarity=0.975  Sum_probs=55.2

Q ss_pred             CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCCCCCC
Q psy7364           1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSSRL   69 (73)
Q Consensus         1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~~~~~   69 (73)
                      ||||+|||||+++++..    .++.+.+++|+||||+|||||||||++||||||++||||||||+++..
T Consensus       127 mHKY~PrlhI~~~~~~~----~~~~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NpFAkgFr~~~~~  191 (193)
T 1h6f_A          127 MHKYQPRFHIVRANDIL----KLPYSTFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFAKGFRDTGNG  191 (193)
T ss_dssp             TEEEEEEEEEECCSCGG----GGGGSCCEEEECGGGCEEEESSCSCHHHHHHHHHHCGGGGGGCC----
T ss_pred             CceEeeEEEEEEcCCcc----CCCCcceEEEECCCeEEEEEeccCchhhhhhhhcCCCCCcccccCCCC
Confidence            89999999999986532    234467999999999999999999999999999999999999998764

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}

Probab=100.00  E-value=3.5e-35  Score=202.37  Aligned_cols=64  Identities=58%  Similarity=0.920  Sum_probs=53.7

Q ss_pred             CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCC
Q psy7364           1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRD   65 (73)
Q Consensus         1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~   65 (73)
                      ||||+|||||+++++.... ..+..+.+++|+||||+|||||||||++||||||++|||||||||
T Consensus       140 mHKYqPrlhIv~~~~~~~~-~~~~~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NPFAkgFrd  203 (203)
T 4a04_A          140 MHRYQPRFHVVYVDPRKDS-EKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFAKGFRD  203 (203)
T ss_dssp             TCEEEEEEEEEECCCC---------CCEEEEECGGGCEEEESSCCCHHHHHHHHHHCGGGGGGCC
T ss_pred             ccccccEEEEEEcCCCccc-ccccCCceEEEECCCcEEEeeCccCCHHHHHHHhccCCCCcccCC
Confidence            8999999999999865432 123456799999999999999999999999999999999999997

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4

Probab=100.00  E-value=3.9e-35  Score=199.77  Aligned_cols=59  Identities=49%  Similarity=0.818  Sum_probs=54.3

Q ss_pred             CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCCCC
Q psy7364           1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSS   67 (73)
Q Consensus         1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~~~   67 (73)
                      ||||+|||||+++++.        ...+++|.||||+|||||||||++||||||++|||||||||++
T Consensus       123 mHKY~PrlhI~~~~~~--------~~~~~tf~FpeT~FiAVTaYQN~~It~LKi~~NpFAkgFr~~~  181 (184)
T 1xbr_A          123 LHKYEPRIHIVRVGGT--------QRMITSHSFPETQFIAVTAYQNEEITALKIKHNPFAKAFLDAK  181 (184)
T ss_dssp             SSEEEEEEEEEEESSS--------SCCEEEEECGGGCEEEESSCCCHHHHHHHHHHCGGGHHHHHHH
T ss_pred             CceEEEEEEEEEeCCC--------cceEEEEECCCcEEEEEeccCChhHhhhhhccCCCCcccCCCc
Confidence            8999999999998753        2468999999999999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	73
d1h6fa_	184	b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa	2e-28
d1xbra_	184	b.2.5.4 (A:) T domain from Brachyury transcription	2e-27

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (244), Expect = 2e-28
 Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 4/65 (6%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           MH+YQPR H+++  D    I  L    +RTY+FPE+ F AVTAYQN  IT+LKID+NPFA
Sbjct: 124 MHKYQPRFHIVRAND----ILKLPYSTFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFA 179

Query: 61  KGFRD 65
           KGFRD
Sbjct: 180 KGFRD 184

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 95.7 bits (238), Expect = 2e-27
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 8/68 (11%)

Query: 1   MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFA 60
           +H+Y+PRIH+++                 ++ FPE+ F AVTAYQN+ IT LKI  NPFA
Sbjct: 123 LHKYEPRIHIVRVGG--------TQRMITSHSFPETQFIAVTAYQNEEITALKIKHNPFA 174

Query: 61  KGFRDSSR 68
           K F D+  
Sbjct: 175 KAFLDAKE 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	73
d1h6fa_	184	T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId	100.0
d1xbra_	184	T domain from Brachyury transcription factor {Afri	100.0

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-35  Score=198.69  Aligned_cols=61  Identities=62%  Similarity=1.048  Sum_probs=54.9

Q ss_pred             CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCC
Q psy7364           1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRD   65 (73)
Q Consensus         1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~   65 (73)
                      ||||||||||+++++...    .....+++|.||||+|||||||||++||+|||++|||||||||
T Consensus       124 mhKYqPrl~I~~~~~~~~----~~~~~~~~f~FpeT~FiAVTaYQN~~It~lKi~~NpFAkgfR~  184 (184)
T d1h6fa_         124 MHKYQPRFHIVRANDILK----LPYSTFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFAKGFRD  184 (184)
T ss_dssp             TEEEEEEEEEECCSCGGG----GGGSCCEEEECGGGCEEEESSCSCHHHHHHHHHHCGGGGGGCC
T ss_pred             cccCCCeEEEEEeCCCCC----CCccceEEEECCCeEEEEEccccchhHHHHHhccCcccccccC
Confidence            899999999999876432    2345789999999999999999999999999999999999997

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=4.9e-35  Score=197.99  Aligned_cols=59  Identities=49%  Similarity=0.822  Sum_probs=54.0

Q ss_pred             CCcCccEEEEEEeCCCCCCcccccccceEEeeecCceEEEeccccchhhhhhccccCCCCcCCCCCC
Q psy7364           1 MHRYQPRIHLIKWRDQGTPITDLELEQYRTYVFPESVFTAVTAYQNQLITKLKIDSNPFAKGFRDSS   67 (73)
Q Consensus         1 mHkY~P~lhi~~~~~~~~~~~~~~~~~~~tf~fpeT~FiaVTaYqN~~ItqLKI~~NPfAkgfR~~~   67 (73)
                      ||||||||||+++++..        ....+|+||||+|||||||||++||+|||++|||||||||+.
T Consensus       123 mHKYqPrl~I~~~~~~~--------~~~~~f~FpeT~FiaVTaYQN~~It~lKi~~NpFAkgfR~~~  181 (184)
T d1xbra_         123 LHKYEPRIHIVRVGGTQ--------RMITSHSFPETQFIAVTAYQNEEITALKIKHNPFAKAFLDAK  181 (184)
T ss_dssp             SSEEEEEEEEEEESSSS--------CCEEEEECGGGCEEEESSCCCHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccceeeeEEEEEeCCCc--------cceeEEEcCCeEEEEEeecCcHHHhHHHhccCcccccccccc
Confidence            89999999999997532        357899999999999999999999999999999999999864