Psyllid ID: psy7377

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MNIADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDE
Secondary Structure (PSIPRED)
cccccccccccccHHHHcccccHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mniadhevfafpseeeadkvlsipdVEQRIKDVLMVLGNfkqyrdparsrcEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDE
Flexible Loop (DISEMBL)
mniadhevfafpseeeadkvlsipdVEQRIKDVLMVLgnfkqyrdparsrCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDE
Low Complexity Region (SEG)
MNIADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDE
Disordered region (IsUnstruct)
*******************VLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFP***
Disordered Region (DISOPRED)
*N****EV*****************VEQRIKDVLMVLGNFKQ*****RS*CEYTSLLLKDLCTYFSYNEFLMERIMQIFPLD*
Disordered Region (DISEMBL)
MNIADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDE
Disordered Region (DISPRO)
MNI**HEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLD*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNIADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
Q922K7	793	Putative ribosomal RNA me	yes	N/A	1.0	0.104	0.441	2e-15
P46087	812	Putative ribosomal RNA me	yes	N/A	0.951	0.097	0.402	7e-12
O94268	608	Putative ribosomal RNA me	yes	N/A	0.698	0.095	0.379	3e-08
P40991	618	Putative ribosomal RNA me	yes	N/A	0.698	0.093	0.396	1e-06

>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus GN=Nop2 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 3/86 (3%)

Query: 1   MNIADHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57
           +N+ D E F  P   E D+    PD   V +RI+D++ VL +F   R+  RSR EY S L
Sbjct: 196 INVEDEEAFVLPPAGETDQDGQAPDLQRVHKRIQDIVGVLRDFGAQREEGRSRAEYLSRL 255

Query: 58  LKDLCTYFSYNEFLMERIMQIFPLDE 83
            KDL TY+SY +FL+ ++M++FPL E
Sbjct: 256 QKDLATYYSYGDFLLSKLMELFPLSE 281

May play a role in the regulation of the cell cycle and the increased nucleolar activity that is associated with the cell proliferation. May act as ribosomal RNA methyltransferase.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens GN=NOP2 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 5   DHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDL 61
           D E F  P   E ++    PD   V +RI+D++ +L +F   R+  RSR EY + L KDL
Sbjct: 215 DEEPFVLPPAGEMEQDAQAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEYLNRLKKDL 274

Query: 62  CTYFSYNEFLMERIMQIFPLDE 83
             Y+SY +FL+ ++M +FPL E
Sbjct: 275 AIYYSYGDFLLGKLMDLFPLSE 296

May play a role in the regulation of the cell cycle and the increased nucleolar activity that is associated with the cell proliferation. May act as ribosomal RNA methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.20c PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 39/58 (67%)

Query: 26  VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDE 83
           ++ RI++++ VL +FK   +P R+R EY   LL D+C Y+ Y+ FL E++ ++F + E
Sbjct: 194 IQLRIQEIVRVLNDFKNLCEPGRNRSEYVDQLLNDICAYYGYSRFLAEKLFELFSVSE 251

Required for 60S ribosomal subunit synthesis. May act as ribosomal RNA methyltransferase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 22  SIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIF 79
           ++     R+ +++ VL NFK      RSR EY   LLKD+C YF Y  FL E++  +F
Sbjct: 196 NLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLF 253

Required for 60S ribosomal subunit synthesis. May act as ribosomal RNA methyltransferase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
193638967	657	PREDICTED: putative ribosomal RNA methyl	1.0	0.126	0.590	2e-23
357609454	666	hypothetical protein KGM_08224 [Danaus p	1.0	0.124	0.614	6e-23
307182612	696	Putative RNA methyltransferase NOL1 [Cam	0.975	0.116	0.604	8e-23
332018753	677	Putative ribosomal RNA methyltransferase	0.939	0.115	0.602	2e-21
345481794	786	PREDICTED: putative ribosomal RNA methyl	0.975	0.103	0.580	5e-21
328784827	657	PREDICTED: putative ribosomal RNA methyl	0.915	0.115	0.618	6e-21
383851252	596	PREDICTED: putative ribosomal RNA methyl	0.903	0.125	0.631	1e-20
340726578	602	PREDICTED: putative ribosomal RNA methyl	0.915	0.126	0.618	2e-20
350418300	604	PREDICTED: putative ribosomal RNA methyl	0.915	0.125	0.618	2e-20
307212380	778	Putative RNA methyltransferase NOL1 [Har	0.975	0.104	0.555	2e-20

>gi|193638967|ref|XP_001943714.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Acyrthosiphon pisum]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 68/83 (81%)

Query: 1   MNIADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKD 60
           +N+A  +VF FP+ ++ D+ + IP+VEQRIKD+L+VL NF ++R+  RSR EYT LLLKD
Sbjct: 228 INVASQDVFVFPASDKIDEHIPIPEVEQRIKDILLVLSNFNKFREENRSRQEYTELLLKD 287

Query: 61  LCTYFSYNEFLMERIMQIFPLDE 83
           LCTYFSYN FLME++M +FPL++
Sbjct: 288 LCTYFSYNTFLMEKMMHLFPLED 310

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357609454|gb|EHJ66457.1| hypothetical protein KGM_08224 [Danaus plexippus]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 64/83 (77%)

Query: 1   MNIADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKD 60
           +NI+  +VFAFPSEEE     S+ D+ QRIKDV+ VL +F + +D  RSRCEYT LL+KD
Sbjct: 234 LNISKQDVFAFPSEEELQNPTSLQDIHQRIKDVVTVLSDFNRLKDQERSRCEYTELLMKD 293

Query: 61  LCTYFSYNEFLMERIMQIFPLDE 83
           LC Y+SYNEFLME +MQIFP+ E
Sbjct: 294 LCMYYSYNEFLMEVLMQIFPVQE 316

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182612|gb|EFN69780.1| Putative RNA methyltransferase NOL1 [Camponotus floridanus]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 65/81 (80%)

Query: 3   IADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLC 62
           IA   VF+FP+EEE   V ++ D++QRI+DV++VL +FK+ R+  RSR EYT LL +DLC
Sbjct: 318 IAHQSVFSFPTEEELANVTNLKDIQQRIRDVIIVLSDFKRLREKNRSRSEYTELLRRDLC 377

Query: 63  TYFSYNEFLMERIMQIFPLDE 83
           TY+SYN FLME++MQIFPLDE
Sbjct: 378 TYYSYNNFLMEKLMQIFPLDE 398

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018753|gb|EGI59318.1| Putative ribosomal RNA methyltransferase NOP2 [Acromyrmex echinatior]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 62/78 (79%)

Query: 6   HEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYF 65
             VF+FP++EE   V ++ D++QRI+DV+MVL +FK+ R+  RSR EYT LL  DLCTY+
Sbjct: 293 QSVFSFPNDEELTNVTNLKDIQQRIRDVIMVLSDFKKLREKNRSRSEYTELLRMDLCTYY 352

Query: 66  SYNEFLMERIMQIFPLDE 83
           SYN FLME++MQIFPLDE
Sbjct: 353 SYNNFLMEKLMQIFPLDE 370

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481794|ref|XP_001604770.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Nasonia vitripennis]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 61/81 (75%)

Query: 3   IADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLC 62
           I+  ++F FP+EEE     ++ DV+QRI+DV+MVL +FK+ R P RSR EY  LL  DLC
Sbjct: 395 ISHQQIFNFPTEEELSNPTNLKDVQQRIQDVIMVLSDFKKLRQPDRSRSEYLELLKTDLC 454

Query: 63  TYFSYNEFLMERIMQIFPLDE 83
           TYFSYN FLME++MQ+FPL E
Sbjct: 455 TYFSYNSFLMEKLMQMFPLSE 475

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784827|ref|XP_001121968.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Apis mellifera]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 61/76 (80%)

Query: 8   VFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSY 67
           VF FPSEEE   + ++ DV+QRIKD++M+L +FK+ RD  RSR EY +LL +DLCTY+SY
Sbjct: 276 VFTFPSEEELADITNLKDVQQRIKDIVMILSDFKRLRDINRSRSEYMNLLRRDLCTYYSY 335

Query: 68  NEFLMERIMQIFPLDE 83
           N FLME++MQIF LDE
Sbjct: 336 NNFLMEKLMQIFSLDE 351

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851252|ref|XP_003701148.1| PREDICTED: putative ribosomal RNA methyltransferase nop2-like [Megachile rotundata]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 8   VFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSY 67
           +F FP+EE+AD V ++ DV+QRIKDV+M+L + K+ RD  RSR EY  LL KDLCTY+SY
Sbjct: 215 IFHFPTEEDAD-VTNLKDVQQRIKDVVMILSDLKRLRDINRSRSEYMDLLKKDLCTYYSY 273

Query: 68  NEFLMERIMQIFPLDE 83
           N FLM+++MQIFPLDE
Sbjct: 274 NNFLMQKLMQIFPLDE 289

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726578|ref|XP_003401633.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Bombus terrestris]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 60/76 (78%)

Query: 8   VFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSY 67
           VF FP++EE   V ++ DV+QRIKDV+M+L +FK+ RD  RSR EY  LL  DLCTY+SY
Sbjct: 220 VFTFPTKEELADVTNLKDVQQRIKDVIMILSDFKRLRDINRSRTEYMDLLRSDLCTYYSY 279

Query: 68  NEFLMERIMQIFPLDE 83
           N FLME+++QIFPLDE
Sbjct: 280 NNFLMEKLIQIFPLDE 295

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418300|ref|XP_003491816.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Bombus impatiens]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 60/76 (78%)

Query: 8   VFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSY 67
           VF FP++EE   V ++ DV+QRIKDV+M+L +FK+ RD  RSR EY  LL  DLCTY+SY
Sbjct: 222 VFTFPTKEELADVTNLKDVQQRIKDVVMILSDFKRLRDINRSRTEYMDLLRSDLCTYYSY 281

Query: 68  NEFLMERIMQIFPLDE 83
           N FLME+++QIFPLDE
Sbjct: 282 NNFLMEKLIQIFPLDE 297

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212380|gb|EFN88172.1| Putative RNA methyltransferase NOL1 [Harpegnathos saltator]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 64/81 (79%)

Query: 3   IADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLC 62
           ++   VF+FP+EEE   V ++ D++QRI+DV+MVL +FK+ RD  RSR EY +LL KDLC
Sbjct: 391 MSQQSVFSFPTEEELANVTNLKDIQQRIRDVIMVLSDFKRLRDGNRSRSEYITLLQKDLC 450

Query: 63  TYFSYNEFLMERIMQIFPLDE 83
           TY+SYN+FLM +++Q+F LDE
Sbjct: 451 TYYSYNDFLMLKLIQMFSLDE 471

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
FB|FBgn0033741	891	CG8545 [Drosophila melanogaste	0.927	0.086	0.564	2.4e-17
WB|WBGene00021073	664	nol-1 [Caenorhabditis elegans	0.963	0.120	0.452	2.5e-14
MGI|MGI:107891	793	Nop2 "NOP2 nucleolar protein"	1.0	0.104	0.441	1.1e-13
RGD|1304616	772	Nop2 "NOP2 nucleolar protein"	1.0	0.107	0.418	3.7e-13
UNIPROTKB|F5GYR3	275	NOP2 "Putative ribosomal RNA m	0.987	0.298	0.395	8.3e-12
ZFIN|ZDB-GENE-050309-7	739	nop2 "NOP2 nucleolar protein h	0.987	0.110	0.441	8.5e-12
UNIPROTKB|F1N3G2	820	NOP2 "Uncharacterized protein"	1.0	0.101	0.406	9.9e-12
UNIPROTKB|F1SLR6	821	NOP2 "Uncharacterized protein"	1.0	0.101	0.406	9.9e-12
UNIPROTKB|F1NK16	722	Gga.5513 "Uncharacterized prot	1.0	0.114	0.392	4.6e-11
UNIPROTKB|P46087	812	NOP2 "Putative ribosomal RNA m	0.987	0.100	0.395	8.9e-11

FB|FBgn0033741 CG8545 [Drosophila melanogaster (taxid:7227)]

 Score = 224 (83.9 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 44/78 (56%), Positives = 58/78 (74%)

Query:     7 EVFAFPSE-EEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYF 65
             +VF  P E EE +K L++ +V+QRIKDV +VL +FK+YR   RSR EY  LL +DLC Y+
Sbjct:   270 DVFQLPVEGEETEKDLTLQEVQQRIKDVSLVLSDFKRYRQADRSRGEYIDLLRRDLCLYY 329

Query:    66 SYNEFLMERIMQIFPLDE 83
             SYNEFLME++M + PL E
Sbjct:   330 SYNEFLMEKLMDMLPLTE 347

GO:0005730 "nucleolus" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

WB|WBGene00021073 nol-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 194 (73.4 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 38/84 (45%), Positives = 56/84 (66%)

Query:     1 MNIADHEVFAFPSEEEADKVL-SIPDVE---QRIKDVLMVLGNFKQYRDPARSRCEYTSL 56
             +NIA+   F  P+ EE +  + S+P++E   QRI DV+ VLG+FK  RDP +SR  Y  +
Sbjct:   130 LNIANQATFELPTVEEIENEMKSVPNLEIVKQRIADVIQVLGDFKNRRDPQKSRENYVEV 189

Query:    57 LLKDLCTYFSYNEFLMERIMQIFP 80
             L KDLC+ + YN++LM + M +FP
Sbjct:   190 LKKDLCSQYGYNDYLMGKFMDLFP 213

GO:0003723 "RNA binding" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040039 "inductive cell migration" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

MGI|MGI:107891 Nop2 "NOP2 nucleolar protein" [Mus musculus (taxid:10090)]

 Score = 189 (71.6 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 38/86 (44%), Positives = 54/86 (62%)

Query:     1 MNIADHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57
             +N+ D E F  P   E D+    PD   V +RI+D++ VL +F   R+  RSR EY S L
Sbjct:   196 INVEDEEAFVLPPAGETDQDGQAPDLQRVHKRIQDIVGVLRDFGAQREEGRSRAEYLSRL 255

Query:    58 LKDLCTYFSYNEFLMERIMQIFPLDE 83
              KDL TY+SY +FL+ ++M++FPL E
Sbjct:   256 QKDLATYYSYGDFLLSKLMELFPLSE 281

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

RGD|1304616 Nop2 "NOP2 nucleolar protein" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 3.7e-13, P = 3.7e-13
 Identities = 36/86 (41%), Positives = 54/86 (62%)

Query:     1 MNIADHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57
             +N+ + E F  P   + D+    PD   V +RI+D++ VL +F   R+  RSR EY S L
Sbjct:   191 INVEEEEAFVLPPAGQTDQDTQTPDLQRVHKRIQDIVGVLRDFGAQREEGRSRTEYLSQL 250

Query:    58 LKDLCTYFSYNEFLMERIMQIFPLDE 83
              KDL TY+SY +FL+ ++M++FPL E
Sbjct:   251 QKDLATYYSYGDFLLSKLMELFPLSE 276

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IEA

UNIPROTKB|F5GYR3 NOP2 "Putative ribosomal RNA methyltransferase NOP2" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 8.3e-12, P = 8.3e-12
 Identities = 34/86 (39%), Positives = 52/86 (60%)

Query:     1 MNIADHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57
             +N+ D E F  P   E ++    PD   V +RI+D++ +L +F   R+  RSR EY + L
Sbjct:    88 INV-DEEPFVLPPAGEMEQDAQAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEYLNRL 146

Query:    58 LKDLCTYFSYNEFLMERIMQIFPLDE 83
              KDL  Y+SY +FL+ ++M +FPL E
Sbjct:   147 KKDLAIYYSYGDFLLGKLMDLFPLSE 172

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

ZFIN|ZDB-GENE-050309-7 nop2 "NOP2 nucleolar protein homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 8.5e-12, P = 8.5e-12
 Identities = 38/86 (44%), Positives = 51/86 (59%)

Query:     2 NIADHEVFAFPSEEEADKVLSIP-D---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57
             NI   E F  P   +  K   +P D   + QRIKD + VL NF + R+  + R EY SLL
Sbjct:   209 NIDTTEKFKLPGAADRAKEGLLPMDLKTIHQRIKDNVDVLSNFNEKREEGKERSEYLSLL 268

Query:    58 LKDLCTYFSYNEFLMERIMQIFPLDE 83
               DLCTY+SYN+FL+ ++M +F L E
Sbjct:   269 RADLCTYYSYNQFLISKLMDLFSLSE 294

GO:0006364 "rRNA processing" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1N3G2 NOP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 171 (65.3 bits), Expect = 9.9e-12, P = 9.9e-12
 Identities = 35/86 (40%), Positives = 52/86 (60%)

Query:     1 MNIADHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57
             +N+ + E F  P   E ++    PD   V +RI+D++ VL +F   R+  RSR EY   L
Sbjct:   212 INVDEEEPFLLPPAGEVEQDTQAPDLQRVHKRIQDIVGVLRDFGTQREEGRSRSEYLQRL 271

Query:    58 LKDLCTYFSYNEFLMERIMQIFPLDE 83
              KDL TY+SY +FL+ ++M +FPL E
Sbjct:   272 RKDLATYYSYGDFLLGKLMDLFPLSE 297

GO:0005730 "nucleolus" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1SLR6 NOP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 171 (65.3 bits), Expect = 9.9e-12, P = 9.9e-12
 Identities = 35/86 (40%), Positives = 52/86 (60%)

Query:     1 MNIADHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57
             +N+ + E F  P   E ++    PD   V +RI+D++ VL +F   R+  RSR EY   L
Sbjct:   210 INVDEEEPFVLPLAGEMEQDAQAPDLQRVHKRIQDIVGVLRDFGTQREEGRSRAEYLQRL 269

Query:    58 LKDLCTYFSYNEFLMERIMQIFPLDE 83
              KDL TY+SY +FL+ ++M +FPL E
Sbjct:   270 RKDLATYYSYGDFLLGKLMDLFPLSE 295

GO:0005730 "nucleolus" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1NK16 Gga.5513 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 4.6e-11, P = 4.6e-11
 Identities = 33/84 (39%), Positives = 54/84 (64%)

Query:     1 MNIADHEVFAFPSEEEADKV-LSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLK 59
             +N+   E F  P++E+ +K  + +  + QRIK  + VL NF   R+  R+R EY +LL +
Sbjct:   254 LNLEIDEEFKLPTDEQIEKENIHLHVIHQRIKSNMEVLQNFGVKREEGRTRQEYLALLRR 313

Query:    60 DLCTYFSYNEFLMERIMQIFPLDE 83
             D+  Y+SY++FL++ +M IFPL E
Sbjct:   314 DMAAYYSYSDFLLKMLMDIFPLPE 337

GO:0003723 "RNA binding" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|P46087 NOP2 "Putative ribosomal RNA methyltransferase NOP2" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 8.9e-11, P = 8.9e-11
 Identities = 34/86 (39%), Positives = 52/86 (60%)

Query:     1 MNIADHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57
             +N+ D E F  P   E ++    PD   V +RI+D++ +L +F   R+  RSR EY + L
Sbjct:   212 INV-DEEPFVLPPAGEMEQDAQAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEYLNRL 270

Query:    58 LKDLCTYFSYNEFLMERIMQIFPLDE 83
              KDL  Y+SY +FL+ ++M +FPL E
Sbjct:   271 KKDLAIYYSYGDFLLGKLMDLFPLSE 296

GO:0003723 "RNA binding" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008284 "positive regulation of cell proliferation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
KOG1122|consensus	460		99.65
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	85.94
PF02671	47	PAH: Paired amphipathic helix repeat; InterPro: IP	85.09

>KOG1122|consensus

Probab=99.65  E-value=3.1e-17  Score=131.10  Aligned_cols=79  Identities=38%  Similarity=0.735  Sum_probs=73.9

Q ss_pred             cccccCCCChHHhc---cCCChHHHHHHHHHHHHHhhchhhccCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCC
Q psy7377           5 DHEVFAFPSEEEAD---KVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPL   81 (83)
Q Consensus         5 ~~e~f~lp~~ee~e---~~~dl~~v~~RIk~iv~vL~~fk~~r~~grSR~eY~~~L~~Di~~yYgYn~fL~ek~~~LF~~   81 (83)
                      +.+.|.||+.++.+   .+|||+.|+.||.+++.+|++||+++++|++|++|+.+|++|+|.||+||.|||++++++||+
T Consensus        72 ~~~~l~lp~~~~~~~~~~~P~L~~v~~~~~~~~~~l~dfk~l~~~~~~~~~~~~~l~~~~~~~y~y~~~l~~~~~e~~~~  151 (460)
T KOG1122|consen   72 EGDPLLLPTLEEEEEKDSVPDLQNVDLRIVELVPVLGDFKNLKEPGRLRSEYCGQLKKDGAHYYAYGVFLAEKLMELFPL  151 (460)
T ss_pred             ccccccCcccccccccccCCccchhhHHhhhhhhhhcchhcccccccchhhHHHHHHhcccceechHHHHHHHhcccccH
Confidence            46889999988665   678999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CC
Q psy7377          82 DE   83 (83)
Q Consensus        82 ~E   83 (83)
                      .|
T Consensus       152 ~e  153 (460)
T KOG1122|consen  152 VE  153 (460)
T ss_pred             HH
Confidence            54

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=85.94  E-value=0.34  Score=29.32  Aligned_cols=17  Identities=6%  Similarity=0.331  Sum_probs=11.5

Q ss_pred             HHHhcccHHHHHHHHhc
Q psy7377          62 CTYFSYNEFLMERIMQI   78 (83)
Q Consensus        62 ~~yYgYn~fL~ek~~~L   78 (83)
                      +.|||||..|++.|.+|
T Consensus         3 ~~~~Gi~~~lVd~F~~m   19 (55)
T PF09288_consen    3 AALYGIDKDLVDQFENM   19 (55)
T ss_dssp             SS----SHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHc
Confidence            57899999999999876

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat

Probab=85.09  E-value=4.7  Score=22.31  Aligned_cols=43  Identities=21%  Similarity=0.448  Sum_probs=33.0

Q ss_pred             HHHHHHhhchhhccCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHhcCC
Q psy7377          31 KDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFP   80 (83)
Q Consensus        31 k~iv~vL~~fk~~r~~grSR~eY~~~L~~Di~~yYgYn~fL~ek~~~LF~   80 (83)
                      ++.+.+|.+|++   ...|+++    +.+-++...+-.+.|++-|-..+|
T Consensus         5 ~~FL~il~~y~~---~~~~~~~----v~~~v~~Ll~~hpdLl~~F~~FlP   47 (47)
T PF02671_consen    5 NEFLKILNDYKK---GRISRSE----VIEEVSELLRGHPDLLEEFNRFLP   47 (47)
T ss_dssp             HHHHHHHHHHHC---TCSCHHH----HHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHh---cCCCHHH----HHHHHHHHHccCHHHHHHHHhhCc
Confidence            567889999976   3457777    566678889999999999887766

The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00