Psyllid ID: psy7383
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 501 | 2.2.26 [Sep-21-2011] | |||||||
| O46036 | 476 | C-terminal-binding protei | no | N/A | 0.710 | 0.747 | 0.907 | 0.0 | |
| Q9Z2F5 | 430 | C-terminal-binding protei | yes | N/A | 0.770 | 0.897 | 0.705 | 1e-161 | |
| O88712 | 441 | C-terminal-binding protei | yes | N/A | 0.764 | 0.868 | 0.708 | 1e-160 | |
| Q9YHU0 | 440 | C-terminal-binding protei | N/A | N/A | 0.766 | 0.872 | 0.704 | 1e-160 | |
| P56546 | 445 | C-terminal-binding protei | no | N/A | 0.786 | 0.885 | 0.672 | 1e-159 | |
| Q9EQH5 | 445 | C-terminal-binding protei | no | N/A | 0.786 | 0.885 | 0.672 | 1e-159 | |
| P56545 | 445 | C-terminal-binding protei | no | N/A | 0.784 | 0.883 | 0.670 | 1e-159 | |
| Q13363 | 440 | C-terminal-binding protei | no | N/A | 0.766 | 0.872 | 0.691 | 1e-158 | |
| Q0VCQ1 | 445 | C-terminal-binding protei | no | N/A | 0.784 | 0.883 | 0.665 | 1e-158 | |
| Q9W758 | 437 | C-terminal-binding protei | N/A | N/A | 0.774 | 0.887 | 0.674 | 1e-153 |
| >sp|O46036|CTBP_DROME C-terminal-binding protein OS=Drosophila melanogaster GN=CtBP PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/357 (90%), Positives = 341/357 (95%), Gaps = 1/357 (0%)
Query: 1 MDKRKMMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
MDK MM KR R+D ++G +NGP+Q RPLVALLDGRDCSIEMPILKDVATVAFCDAQST
Sbjct: 1 MDKNLMMPKRSRID-VKGNFANGPLQARPLVALLDGRDCSIEMPILKDVATVAFCDAQST 59
Query: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
SEIHEKVLNEAVGALMWHTIILTKEDLEKFK LRIIVRIGSG DNIDVKAAGELGIAVCN
Sbjct: 60 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKALRIIVRIGSGTDNIDVKAAGELGIAVCN 119
Query: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGI 180
VPGYGVEEVADTT+CLILNLYRRTYWLANMVREGKKFTGPEQ+REAA GCARIRGDTLG+
Sbjct: 120 VPGYGVEEVADTTMCLILNLYRRTYWLANMVREGKKFTGPEQVREAAHGCARIRGDTLGL 179
Query: 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI+KSLGLTRVYTLQDLLFQSDCVSLHCTL
Sbjct: 180 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIDKSLGLTRVYTLQDLLFQSDCVSLHCTL 239
Query: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300
NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDD++LA ALKQGRIRAAALDVHE+EPYNV
Sbjct: 240 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDETLALALKQGRIRAAALDVHENEPYNV 299
Query: 301 FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357
FQG LKDAPN++CTPHAAF+S+AS TELREMAA+EIRRAIVG IPD LRNCVNKEYF
Sbjct: 300 FQGALKDAPNLICTPHAAFFSDASATELREMAATEIRRAIVGNIPDVLRNCVNKEYF 356
|
Corepressor targeting diverse transcription regulators. Hairy-interacting protein required for embryonic segmentation and hairy-mediated transcriptional repression. Drosophila melanogaster (taxid: 7227) |
| >sp|Q9Z2F5|CTBP1_RAT C-terminal-binding protein 1 OS=Rattus norvegicus GN=Ctbp1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 568 bits (1463), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/397 (70%), Positives = 318/397 (80%), Gaps = 11/397 (2%)
Query: 13 MDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAV 72
M +R PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAV
Sbjct: 1 MSGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAV 60
Query: 73 GALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADT 132
GALM+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+
Sbjct: 61 GALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADS 120
Query: 133 TLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVAL 192
TLC ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVAL
Sbjct: 121 TLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVAL 180
Query: 193 RAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252
RAKAFGFNV+FYDPYL DGIE++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT
Sbjct: 181 RAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 240
Query: 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNIL 312
+KQMR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++
Sbjct: 241 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 313 CTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFPSAGGGGL--PA--- 367
CTPHAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++ +A PA
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATHWASMDPAVVH 360
Query: 368 ----GLNYPHAPPGGPVSSGPPGGPPG-PGVVPEGIN 399
G Y PP G VS P G P G+VP ++
Sbjct: 361 PELNGAAYSRYPP-GVVSVAPTGIPAAVEGIVPSAMS 396
|
Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex. Corepressor targeting diverse transcription regulators such as GLIS2. Has dehydrogenase activity. Functions in brown adipose tissue (BAT) differentiation. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O88712|CTBP1_MOUSE C-terminal-binding protein 1 OS=Mus musculus GN=Ctbp1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 566 bits (1458), Expect = e-160, Method: Compositional matrix adjust.
Identities = 279/394 (70%), Positives = 317/394 (80%), Gaps = 11/394 (2%)
Query: 16 IRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGAL 75
+R PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAVGAL
Sbjct: 15 VRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGAL 74
Query: 76 MWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLC 135
M+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+TLC
Sbjct: 75 MYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLC 134
Query: 136 LILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAK 195
ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVALRAK
Sbjct: 135 HILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAK 194
Query: 196 AFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255
AFGFNV+FYDPYL DGIE++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT+KQ
Sbjct: 195 AFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ 254
Query: 256 MRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTP 315
MR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++CTP
Sbjct: 255 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 314
Query: 316 HAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFPSAGGGGL--PA------ 367
HAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++ +A PA
Sbjct: 315 HAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATHWASMDPAVVHPEL 374
Query: 368 -GLNYPHAPPGGPVSSGPPGGPPG-PGVVPEGIN 399
G Y PP G VS P G P G+VP ++
Sbjct: 375 NGAAYSRYPP-GVVSVAPTGIPAAVEGIVPSAMS 407
|
Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex (By similarity). Co-repressor targeting diverse transcription regulators such as GLIS2. Has dehydrogenase activity. Functions in brown adipose tissue (BAT) differentiation. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9YHU0|CTBP1_XENLA C-terminal-binding protein 1 OS=Xenopus laevis GN=ctbp1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 564 bits (1454), Expect = e-160, Method: Compositional matrix adjust.
Identities = 276/392 (70%), Positives = 316/392 (80%), Gaps = 8/392 (2%)
Query: 16 IRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGAL 75
IR PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAVGAL
Sbjct: 15 IRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGAL 74
Query: 76 MWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLC 135
M+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+T+C
Sbjct: 75 MYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTMC 134
Query: 136 LILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAK 195
ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVALRAK
Sbjct: 135 HILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAK 194
Query: 196 AFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255
FGFNV FYDPYL DGIE++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FTIKQ
Sbjct: 195 TFGFNVFFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTIKQ 254
Query: 256 MRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTP 315
MR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++CTP
Sbjct: 255 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFTQGPLKDAPNLICTP 314
Query: 316 HAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFPSAG-GGGLPAGLNYP-- 372
HAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++ +A + G+ +P
Sbjct: 315 HAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATHWASMDPGVVHPEL 374
Query: 373 ----HAPPGGPVSSGPPGGPPG-PGVVPEGIN 399
+ P G VS P G P G+VP ++
Sbjct: 375 NGGAYRYPQGVVSVAPAGLPAAVEGIVPSAMS 406
|
Corepressor targeting diverse transcription regulators. Has dehydrogenase activity. Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P56546|CTBP2_MOUSE C-terminal-binding protein 2 OS=Mus musculus GN=Ctbp2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 561 bits (1447), Expect = e-159, Method: Compositional matrix adjust.
Identities = 277/412 (67%), Positives = 324/412 (78%), Gaps = 18/412 (4%)
Query: 1 MDKRKMMAKRPRMDSI----RGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCD 56
+DK K+ KR R+D I R I NGP+ RPLVALLDGRDC++EMPILKD+ATVAFCD
Sbjct: 4 VDKHKV--KRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCD 61
Query: 57 AQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGI 116
AQST EIHEKVLNEAVGA+M+HTI LT+EDLEKFK LR+IVRIGSG DN+D+KAAGELGI
Sbjct: 62 AQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGI 121
Query: 117 AVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGD 176
AVCN+P VEE AD+T+C ILNLYRR WL +REG + EQ+RE ASG ARIRG+
Sbjct: 122 AVCNIPSAAVEETADSTVCHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGE 181
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSL 236
TLG++G GR G AVA+RAKAFGF+VIFYDPYL DGIE+SLG+ RVYTLQDLL+QSDCVSL
Sbjct: 182 TLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSL 241
Query: 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESE 296
HC LNEHNHHLIN+FTIKQMR GAFLVN ARGGLVD+ +LA ALK+GRIR AALDVHESE
Sbjct: 242 HCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESE 301
Query: 297 PYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
P++ QG LKDAPN++CTPH A+YSE + E+RE AA+EIRRAI GRIP+ LRNCVNKE+
Sbjct: 302 PFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEF 361
Query: 357 FPSAGGGGLP---------AGLNYPHAPPGGPVSSGPPGGPPG-PGVVPEGI 398
F ++ + G Y + P G V P G PP G++P GI
Sbjct: 362 FVTSAPWSVIDQQAIHPELNGATYRYPP--GIVGVAPGGLPPAMEGIIPGGI 411
|
Corepressor targeting diverse transcription regulators. Isoform 2 probably acts as a scaffold for specialized synapses (By similarity). Functions in brown adipose tissue (BAT) differentiation. Mus musculus (taxid: 10090) |
| >sp|Q9EQH5|CTBP2_RAT C-terminal-binding protein 2 OS=Rattus norvegicus GN=Ctbp2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 561 bits (1445), Expect = e-159, Method: Compositional matrix adjust.
Identities = 277/412 (67%), Positives = 324/412 (78%), Gaps = 18/412 (4%)
Query: 1 MDKRKMMAKRPRMDSI----RGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCD 56
+DK K+ KR R+D I R I NGP+ RPLVALLDGRDC++EMPILKD+ATVAFCD
Sbjct: 4 VDKHKV--KRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCD 61
Query: 57 AQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGI 116
AQST EIHEKVLNEAVGA+M+HTI LT+EDLEKFK LR+IVRIGSG DN+D+KAAGELGI
Sbjct: 62 AQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGI 121
Query: 117 AVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGD 176
AVCN+P VEE AD+T+C ILNLYRR WL +REG + EQ+RE ASG ARIRG+
Sbjct: 122 AVCNIPSAAVEETADSTVCHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGE 181
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSL 236
TLG++G GR G AVA+RAKAFGF+VIFYDPYL DGIE+SLG+ RVYTLQDLL+QSDCVSL
Sbjct: 182 TLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSL 241
Query: 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESE 296
HC LNEHNHHLIN+FTIKQMR GAFLVN ARGGLVD+ +LA ALK+GRIR AALDVHESE
Sbjct: 242 HCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESE 301
Query: 297 PYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
P++ QG LKDAPN++CTPH A+YSE + E+RE AA+EIRRAI GRIP+ LRNCVNKE+
Sbjct: 302 PFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEF 361
Query: 357 FPSAGGGGLP---------AGLNYPHAPPGGPVSSGPPGGPPG-PGVVPEGI 398
F ++ + G Y + P G V P G PP G++P GI
Sbjct: 362 FVTSTPWSVIDQQAIHPELNGATYRYPP--GIVGVAPGGLPPAMEGIIPGGI 411
|
Corepressor targeting diverse transcription regulators. Functions in brown adipose tissue (BAT) differentiation. Isoform 2 probably acts as a scaffold for specialized synapses. Rattus norvegicus (taxid: 10116) |
| >sp|P56545|CTBP2_HUMAN C-terminal-binding protein 2 OS=Homo sapiens GN=CTBP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 560 bits (1443), Expect = e-159, Method: Compositional matrix adjust.
Identities = 277/413 (67%), Positives = 325/413 (78%), Gaps = 20/413 (4%)
Query: 1 MDKRKMMAKRPRMDSI----RGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCD 56
+DK K+ KR R+D I R I NGP+ RPLVALLDGRDC++EMPILKD+ATVAFCD
Sbjct: 4 VDKHKV--KRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCD 61
Query: 57 AQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGI 116
AQST EIHEKVLNEAVGA+M+HTI LT+EDLEKFK LR+IVRIGSG DN+D+KAAGELGI
Sbjct: 62 AQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGI 121
Query: 117 AVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGD 176
AVCN+P VEE AD+T+C ILNLYRR WL +REG + EQ+RE ASG ARIRG+
Sbjct: 122 AVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGE 181
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSL 236
TLG++G GR G AVA+RAKAFGF+VIFYDPYL DGIE+SLG+ RVYTLQDLL+QSDCVSL
Sbjct: 182 TLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSL 241
Query: 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESE 296
HC LNEHNHHLIN+FTIKQMR GAFLVN ARGGLVD+ +LA ALK+GRIR AALDVHESE
Sbjct: 242 HCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESE 301
Query: 297 PYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
P++ QG LKDAPN++CTPH A+YSE + E+RE AA+EIRRAI GRIP+ LRNCVNKE+
Sbjct: 302 PFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEF 361
Query: 357 FPSAGGGGLP---------AGLNYPHAPPGGPVSSGPPGGPPG--PGVVPEGI 398
F ++ + G Y + PPG + PGG P G++P GI
Sbjct: 362 FVTSAPWSVIDQQAIHPELNGATYRY-PPG--IVGVAPGGLPAAMEGIIPGGI 411
|
Isoform 2 probably acts as a scaffold for specialized synapses. Homo sapiens (taxid: 9606) |
| >sp|Q13363|CTBP1_HUMAN C-terminal-binding protein 1 OS=Homo sapiens GN=CTBP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 271/392 (69%), Positives = 315/392 (80%), Gaps = 8/392 (2%)
Query: 16 IRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGAL 75
+R PI NGP+ RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAVGAL
Sbjct: 15 VRPPIMNGPLHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGAL 74
Query: 76 MWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLC 135
M+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+TLC
Sbjct: 75 MYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLC 134
Query: 136 LILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAK 195
ILNLYRR WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVALRAK
Sbjct: 135 HILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAK 194
Query: 196 AFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255
AFGFNV+FYDPYL DG+E++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT+KQ
Sbjct: 195 AFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ 254
Query: 256 MRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTP 315
MR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++CTP
Sbjct: 255 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 314
Query: 316 HAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFPSAG-GGGLPAGLNYP-- 372
HAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++ +A + + +P
Sbjct: 315 HAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATHWASMDPAVVHPEL 374
Query: 373 ----HAPPGGPVSSGPPGGPPG-PGVVPEGIN 399
+ P G V P G P G+VP ++
Sbjct: 375 NGAAYRYPPGVVGVAPTGIPAAVEGIVPSAMS 406
|
Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex. Functions in brown adipose tissue (BAT) differentiation. Corepressor targeting diverse transcription regulators such as GLIS2. Has dehydrogenase activity. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0VCQ1|CTBP2_BOVIN C-terminal-binding protein 2 OS=Bos taurus GN=CTBP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 275/413 (66%), Positives = 323/413 (78%), Gaps = 20/413 (4%)
Query: 1 MDKRKMMAKRPRMDSI----RGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCD 56
+DK K+ KR R+D I R I NGP+ RPLVALLDGRDC++EMPILKD+ATVAFCD
Sbjct: 4 VDKHKV--KRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCD 61
Query: 57 AQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGI 116
AQST EIHEKVLNEAVGA+M+HTI LT+EDLEKFK LR+IVRIGSG DN+D+KAAGELGI
Sbjct: 62 AQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGI 121
Query: 117 AVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGD 176
AVCN+P VEE AD+T+C ILNLYRR WL +REG + EQ+RE ASG ARIRG+
Sbjct: 122 AVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGE 181
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSL 236
TLG++G GR G AVA+RAKAFGF+V+FYDPYL DG E+SLG+ RVYTLQDLL+QSDCVSL
Sbjct: 182 TLGLIGFGRTGQAVAVRAKAFGFSVLFYDPYLQDGTERSLGVQRVYTLQDLLYQSDCVSL 241
Query: 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESE 296
HC LNEHNHHLIN+FTIKQMR GAFLVN ARGGLVD+ +LA ALK+GRIR AALDVHESE
Sbjct: 242 HCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESE 301
Query: 297 PYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
P++ QG LKDAPN++CTPH A+YSE + E+RE AA+EIRRAI GRIP+ LRNCVNKE+
Sbjct: 302 PFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEF 361
Query: 357 FPSAGGGGLP---------AGLNYPHAPPGGPVSSGPPGGPPG--PGVVPEGI 398
F + + G Y + PPG + PGG P G++P GI
Sbjct: 362 FVTTAPWSVIDQQAIHPELNGATYRY-PPG--IVGVAPGGLPAAMEGIIPGGI 411
|
Corepressor targeting diverse transcription regulators. Functions in brown adipose tissue (BAT) differentiation (By similarity). Isoform 2 probably acts as a scaffold for specialized synapses. Bos taurus (taxid: 9913) |
| >sp|Q9W758|CTBP2_XENLA C-terminal-binding protein 2 OS=Xenopus laevis GN=ctbp2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 273/405 (67%), Positives = 311/405 (76%), Gaps = 17/405 (4%)
Query: 1 MDKRKMMAKRPRMDSI----RGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCD 56
MDK K+ KR R+D I R PI NGPM RPLVALLDGRDC+IEMPILKDVATVAFCD
Sbjct: 1 MDKHKV--KRQRLDRICDGIRPPILNGPMPVRPLVALLDGRDCTIEMPILKDVATVAFCD 58
Query: 57 AQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGI 116
AQST EIHEKVL+EAVGALM+HTI L++EDLEKFK LRII++IGSG DNID+K+A ELGI
Sbjct: 59 AQSTQEIHEKVLSEAVGALMYHTITLSREDLEKFKALRIIIKIGSGYDNIDIKSAAELGI 118
Query: 117 AVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGD 176
AVCN+P VEE AD+TLC ILNLYRR WL +REG + EQ+RE A G ARIRG+
Sbjct: 119 AVCNIPSASVEETADSTLCHILNLYRRVTWLHQAMREGNRPASVEQIREVAGGAARIRGE 178
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSL 236
TLGI+GLGRIG AVALRAKAF F VIFYDPYL DG+E+SLGL R+ TLQ+LL SDC++L
Sbjct: 179 TLGIIGLGRIGQAVALRAKAFNFTVIFYDPYLADGVERSLGLQRMATLQELLMHSDCITL 238
Query: 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESE 296
HC LNEHNHHLIN+FTIKQMR G FLVNTARGGLVD+ +LA ALK GRIR AALDVHESE
Sbjct: 239 HCNLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESE 298
Query: 297 PYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
P++ QG LKDAPN++CTPH A+YSE + E RE AA EIRRAI G IPD LRNCVNK+Y
Sbjct: 299 PFSFSQGPLKDAPNLICTPHTAWYSEHASIEAREEAAKEIRRAIAGPIPDSLRNCVNKDY 358
Query: 357 FPSA-GGGGLPAGLNYPHA--------PPG--GPVSSGPPGGPPG 390
+A G+ +P PPG G S+G P G
Sbjct: 359 LLAAVQWSGMEQAAVHPELNGASSYRFPPGVVGVTSAGHPSAIEG 403
|
Corepressor targeting diverse transcription regulators. Xenopus laevis (taxid: 8355) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 501 | ||||||
| 242022752 | 436 | C-terminal-binding protein, putative [Pe | 0.866 | 0.995 | 0.782 | 0.0 | |
| 91090312 | 444 | PREDICTED: similar to 2-hydroxyacid dehy | 0.882 | 0.995 | 0.778 | 0.0 | |
| 307180364 | 455 | C-terminal-binding protein [Camponotus f | 0.780 | 0.859 | 0.839 | 0.0 | |
| 350413510 | 446 | PREDICTED: C-terminal-binding protein-li | 0.848 | 0.952 | 0.784 | 0.0 | |
| 345491070 | 473 | PREDICTED: C-terminal-binding protein-li | 0.790 | 0.837 | 0.836 | 0.0 | |
| 328776329 | 477 | PREDICTED: c-terminal-binding protein is | 0.780 | 0.819 | 0.834 | 0.0 | |
| 383862195 | 477 | PREDICTED: C-terminal-binding protein-li | 0.780 | 0.819 | 0.827 | 0.0 | |
| 328716960 | 490 | PREDICTED: c-terminal-binding protein-li | 0.832 | 0.851 | 0.804 | 0.0 | |
| 347970860 | 473 | AGAP003893-PA [Anopheles gambiae str. PE | 0.770 | 0.816 | 0.803 | 0.0 | |
| 157109874 | 437 | 2-hydroxyacid dehydrogenase [Aedes aegyp | 0.702 | 0.805 | 0.920 | 0.0 |
| >gi|242022752|ref|XP_002431802.1| C-terminal-binding protein, putative [Pediculus humanus corporis] gi|212517134|gb|EEB19064.1| C-terminal-binding protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/497 (78%), Positives = 408/497 (82%), Gaps = 63/497 (12%)
Query: 1 MDKRKMMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
MDKRKM+AKRPRMD +RGPI+NGPMQ+RPLVALLDGRDCSIEMPILKDVATVAFCDAQST
Sbjct: 1 MDKRKMLAKRPRMD-VRGPIANGPMQSRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 59
Query: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN
Sbjct: 60 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 119
Query: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGI 180
VPGYGVEEVADTTLCLILNLYRRTYWLA+MVREGKKF GPEQ+REAA GCARIRGDTLGI
Sbjct: 120 VPGYGVEEVADTTLCLILNLYRRTYWLASMVREGKKFNGPEQVREAAQGCARIRGDTLGI 179
Query: 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
VGLGRIGS VALRAKAFGFNVIFYDPYLPDGI+KSLGLTRVYTLQ+LLFQSDCVSLHCTL
Sbjct: 180 VGLGRIGSGVALRAKAFGFNVIFYDPYLPDGIDKSLGLTRVYTLQELLFQSDCVSLHCTL 239
Query: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300
NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDD+SLAAALKQGRIRAAALDVHE+EPYNV
Sbjct: 240 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDESLAAALKQGRIRAAALDVHENEPYNV 299
Query: 301 FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFPSA 360
FQG LKDAPN+LCTPHAAFYS+ASCTELREMAASEIRRAIVGRIP+CLRNCVNKEYF +
Sbjct: 300 FQGPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPECLRNCVNKEYFLPS 359
Query: 361 GGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAAAAIGT 420
GG PEGINGG YYA A
Sbjct: 360 GG-------------------------------YPEGINGG-------YYAGAL------ 375
Query: 421 LPPVQQAHSTTPHDSAIAPAPGSERGGGAPPSGSGGGGAPPSGGGPPPNTPAGLPHNLPL 480
PVQQAHSTTPH+ P S GSG G PPS + +G+PH LPL
Sbjct: 376 --PVQQAHSTTPHE-----VPHS--------VGSGSAGGPPSATA---GSVSGIPHTLPL 417
Query: 481 STADPSNHHPPKPESSE 497
S DP+NHH KPE SE
Sbjct: 418 SAPDPANHHSQKPEPSE 434
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91090312|ref|XP_972241.1| PREDICTED: similar to 2-hydroxyacid dehydrogenase [Tribolium castaneum] gi|270013805|gb|EFA10253.1| hypothetical protein TcasGA2_TC012453 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/497 (77%), Positives = 406/497 (81%), Gaps = 55/497 (11%)
Query: 1 MDKRKMMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
MDKRKMMAKRPR++++RGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST
Sbjct: 1 MDKRKMMAKRPRVENLRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
Query: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
SEIHEKVLNEAVGALMWHTI+LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN
Sbjct: 61 SEIHEKVLNEAVGALMWHTIVLTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
Query: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGI 180
VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQ+REAA GCARIRGDTLGI
Sbjct: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQVREAAQGCARIRGDTLGI 180
Query: 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL
Sbjct: 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
Query: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300
NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDD+LA ALKQGRIRAAALDVHE+EPYNV
Sbjct: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAQALKQGRIRAAALDVHENEPYNV 300
Query: 301 FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFPSA 360
F G LKDAPN+LCTPHAAFYS+AS TELREMAASEIRRAI+GRIP+CLRNCVNKEYF S
Sbjct: 301 FSGPLKDAPNLLCTPHAAFYSDASATELREMAASEIRRAIMGRIPECLRNCVNKEYFMSP 360
Query: 361 GGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAAAAIGT 420
G +YP V P G+NGG YY A
Sbjct: 361 G--------SYPE-------------------VSPAGVNGG-------YYQGGGAL---- 382
Query: 421 LPPVQQAHSTTPHDSAIAPAPGSERGGGAPPSGSGGGGAPPSGGGPPPNTPAGLPHNLPL 480
PVQQAHSTTPH++ P APP+ PP P PH LP+
Sbjct: 383 --PVQQAHSTTPHEA---------------PHTVTPSAAPPTPQPAPPVGPVVPPHALPI 425
Query: 481 STADPSNHHPPKPESSE 497
ST DP+NHH KPE SE
Sbjct: 426 STPDPANHHATKPEPSE 442
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307180364|gb|EFN68390.1| C-terminal-binding protein [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/435 (83%), Positives = 379/435 (87%), Gaps = 44/435 (10%)
Query: 1 MDKRKMMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
MDKRKMM KRPRM+++RGPI+NGP+QTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST
Sbjct: 1 MDKRKMMPKRPRMENLRGPIANGPIQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
Query: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN
Sbjct: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
Query: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGI 180
VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQ+REAA+GCARIRGDTLGI
Sbjct: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQVREAATGCARIRGDTLGI 180
Query: 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
VGLGRIGSAVALRAKAFGF VIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL
Sbjct: 181 VGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
Query: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300
NEHNHHLINE+TIKQMRPGAFLVNTARGGLVDDD+LAAALKQGRIRAAALDVHE+EPYNV
Sbjct: 241 NEHNHHLINEYTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNV 300
Query: 301 FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFPSA 360
FQG LKDAPN+LCTPHAAFYS+ASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYF S+
Sbjct: 301 FQGPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFLSS 360
Query: 361 GGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAAAAIGT 420
G EGINGG YYA G
Sbjct: 361 TGS------------------------------YSEGINGG-------YYA-------GA 376
Query: 421 LPPVQQAHSTTPHDS 435
LP Q AHSTTPHD+
Sbjct: 377 LPVQQTAHSTTPHDT 391
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350413510|ref|XP_003490012.1| PREDICTED: C-terminal-binding protein-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/483 (78%), Positives = 394/483 (81%), Gaps = 58/483 (12%)
Query: 1 MDKRKMMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
MDKRKMM KRPRMDS+RGPI+NGP+QTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST
Sbjct: 1 MDKRKMMPKRPRMDSLRGPIANGPIQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
Query: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN
Sbjct: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
Query: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGI 180
VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQ+REAA+GCARIRGDTLGI
Sbjct: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQVREAATGCARIRGDTLGI 180
Query: 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
VGLGRIGSAVALRAKAFGF VIFYDPYLPDGIEKSLGL RVYTLQDLLFQSDCVSLHCTL
Sbjct: 181 VGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLNRVYTLQDLLFQSDCVSLHCTL 240
Query: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300
NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDD+LAAALKQGRIRAAALDVHE+EPYNV
Sbjct: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNV 300
Query: 301 FQGN-----LKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355
FQG LKDAPN+LCTPHAAFYS+ASCTELREMAASEIRRAIVGRIPDCLRNCVNKE
Sbjct: 301 FQGQSSQCPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 360
Query: 356 YFPSAGGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAA 415
YF S+ G PEGINGG YY+
Sbjct: 361 YFLSSTGS------------------------------YPEGINGG-------YYSGGL- 382
Query: 416 AAIGTLPPVQQAHSTTPHDSAIAPAPGSERGGGAPPSGSGGGGAPPSGGGPPPNTPAGLP 475
PVQQAHSTTPHDS AP P G APP+ G G+P
Sbjct: 383 -------PVQQAHSTTPHDS--APPPPXXXXXXXXXGAGGPTSAPPTAG------LTGIP 427
Query: 476 HNL 478
H++
Sbjct: 428 HSI 430
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345491070|ref|XP_001602190.2| PREDICTED: C-terminal-binding protein-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/447 (83%), Positives = 383/447 (85%), Gaps = 51/447 (11%)
Query: 1 MDKRKMMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
MDKRKM+ KRPRMD++RGPISNGP+QTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST
Sbjct: 1 MDKRKMLPKRPRMDNLRGPISNGPIQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
Query: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN
Sbjct: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
Query: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGI 180
VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQ+REAA GCARIRGDTLGI
Sbjct: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQVREAAQGCARIRGDTLGI 180
Query: 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL
Sbjct: 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
Query: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300
NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDD+LAAALKQGRIRAAALDVHE+EPYNV
Sbjct: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNV 300
Query: 301 FQGN-----LKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355
FQG LKDAPN+LCTPHAAFYS+ASCTELREMAASEIRRAIVGRIPDCLRNCVNKE
Sbjct: 301 FQGQSTQCPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 360
Query: 356 YFPSAGGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAA 415
YF S G PEGINGG YY A
Sbjct: 361 YFLSTTGS------------------------------YPEGINGG-------YYPGAL- 382
Query: 416 AAIGTLPPVQQAHSTTPHDSAIAPAPG 442
PVQQAHSTTPHDSA P PG
Sbjct: 383 -------PVQQAHSTTPHDSA-PPPPG 401
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328776329|ref|XP_392682.3| PREDICTED: c-terminal-binding protein isoform 1 [Apis mellifera] gi|380012210|ref|XP_003690179.1| PREDICTED: C-terminal-binding protein-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/441 (83%), Positives = 380/441 (86%), Gaps = 50/441 (11%)
Query: 1 MDKRKMMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
MDKRKMM KRPRMD++RGPI+NGP+QTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST
Sbjct: 1 MDKRKMMPKRPRMDNLRGPIANGPIQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
Query: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN
Sbjct: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
Query: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGI 180
VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQ+REAA+GCARIRGDTLGI
Sbjct: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQVREAATGCARIRGDTLGI 180
Query: 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
VGLGRIGSAVALRAKAFGF VIFYDPYLPDGIEKSLGL RVYTLQDLLFQSDCVSLHCTL
Sbjct: 181 VGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLNRVYTLQDLLFQSDCVSLHCTL 240
Query: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300
NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDD+LAAALKQGRIRAAALDVHE+EPYNV
Sbjct: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNV 300
Query: 301 FQGN-----LKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355
FQG LKDAPN+LCTPHAAFYS+ASCTELREMAASEIRRAIVGRIPDCLRNCVNKE
Sbjct: 301 FQGQCSQCPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 360
Query: 356 YFPSAGGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAA 415
YF S+ G PEGINGG YY+
Sbjct: 361 YFLSSTGS------------------------------YPEGINGG-------YYSGGL- 382
Query: 416 AAIGTLPPVQQAHSTTPHDSA 436
PVQQAHSTTPHDSA
Sbjct: 383 -------PVQQAHSTTPHDSA 396
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383862195|ref|XP_003706569.1| PREDICTED: C-terminal-binding protein-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/441 (82%), Positives = 381/441 (86%), Gaps = 50/441 (11%)
Query: 1 MDKRKMMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
MDKRKMM+KRPRM+++RGPI+NGP+Q+RPLVALLDGRDCSIEMPILKD+ATVAFCDAQST
Sbjct: 1 MDKRKMMSKRPRMENLRGPIANGPIQSRPLVALLDGRDCSIEMPILKDIATVAFCDAQST 60
Query: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN
Sbjct: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
Query: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGI 180
VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQ+REAA+GCARIRGDTLGI
Sbjct: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQVREAATGCARIRGDTLGI 180
Query: 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
VGLGRIGSAVALRAKAFGF VIFYDPYLPDGIEKSLGL RVYTLQDLLFQSDCVSLHCTL
Sbjct: 181 VGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLNRVYTLQDLLFQSDCVSLHCTL 240
Query: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300
NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDD+LAAALKQGRIRAAALDVHE+EPYNV
Sbjct: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNV 300
Query: 301 FQGN-----LKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355
FQG LKDAPN+LCTPHAAFYS+ASCTELREMAASEIRRAIVGRIPDCLRNCVNKE
Sbjct: 301 FQGQSSQCPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 360
Query: 356 YFPSAGGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAA 415
YF S+ G PEGINGG YY+
Sbjct: 361 YFLSSTGS------------------------------YPEGINGG-------YYSGGL- 382
Query: 416 AAIGTLPPVQQAHSTTPHDSA 436
PVQQAHSTTPHDSA
Sbjct: 383 -------PVQQAHSTTPHDSA 396
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328716960|ref|XP_001946980.2| PREDICTED: c-terminal-binding protein-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/444 (80%), Positives = 375/444 (84%), Gaps = 27/444 (6%)
Query: 1 MDKRKMMAKRPRMDS-IRGP------ISNGPMQTRPLVALLDGRDCSIEMPILKDVATVA 53
MDKRKM+ KR R+D+ IRG I+NGP+QTRPLVALLDGRDCSIEMPILKDVATVA
Sbjct: 1 MDKRKMITKRTRIDTTIRGAGSGAGAITNGPIQTRPLVALLDGRDCSIEMPILKDVATVA 60
Query: 54 FCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGE 113
FCDAQSTSEIHEKVLNEAVGALMWHTI+LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGE
Sbjct: 61 FCDAQSTSEIHEKVLNEAVGALMWHTIVLTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGE 120
Query: 114 LGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARI 173
LGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLA MVREGKKFTGPEQ+REAA GCARI
Sbjct: 121 LGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLAQMVREGKKFTGPEQVREAAQGCARI 180
Query: 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDC 233
RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDC
Sbjct: 181 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDC 240
Query: 234 VSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293
VSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDD+LA ALKQGRIRAAALDVH
Sbjct: 241 VSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALATALKQGRIRAAALDVH 300
Query: 294 ESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVN 353
E+EP+NV QG LKD+PN+LCTPHAAFYS+ASCTELREMAASEIRRAIVGRIP+CLRNCVN
Sbjct: 301 ENEPFNVLQGPLKDSPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPECLRNCVN 360
Query: 354 KEYFPSAGGGGLPAGLNYPH-APPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAA 412
KEYF PA YPH A S+ P+ +N
Sbjct: 361 KEYF--------PAPTTYPHQAGVASVASAVAVAAAAAAAANPDAMN-----------GG 401
Query: 413 AAAAAIGTLPPVQQAHSTTPHDSA 436
A A PVQQAHSTT HD+
Sbjct: 402 YYAGAGTGSLPVQQAHSTTAHDNV 425
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347970860|ref|XP_308121.5| AGAP003893-PA [Anopheles gambiae str. PEST] gi|347970862|ref|XP_003436651.1| AGAP003893-PB [Anopheles gambiae str. PEST] gi|347970864|ref|XP_003436652.1| AGAP003893-PC [Anopheles gambiae str. PEST] gi|347970866|ref|XP_003436653.1| AGAP003893-PD [Anopheles gambiae str. PEST] gi|347970868|ref|XP_003436654.1| AGAP003893-PE [Anopheles gambiae str. PEST] gi|333466406|gb|EAA03909.6| AGAP003893-PA [Anopheles gambiae str. PEST] gi|333466407|gb|EGK96230.1| AGAP003893-PB [Anopheles gambiae str. PEST] gi|333466408|gb|EGK96231.1| AGAP003893-PC [Anopheles gambiae str. PEST] gi|333466409|gb|EGK96232.1| AGAP003893-PD [Anopheles gambiae str. PEST] gi|333466410|gb|EGK96233.1| AGAP003893-PE [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/427 (80%), Positives = 361/427 (84%), Gaps = 41/427 (9%)
Query: 6 MMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHE 65
MM KR R+ +RGPISNGPMQ+RPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHE
Sbjct: 1 MMPKRSRLGDVRGPISNGPMQSRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHE 60
Query: 66 KVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYG 125
KVLNEAVGALMWHTIILTKEDLEKFK LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYG
Sbjct: 61 KVLNEAVGALMWHTIILTKEDLEKFKALRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYG 120
Query: 126 VEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGR 185
VEEVADTT+CLILNLYRRTYWLANMVREGKKFTGPEQ+R+AA GCARIRGDTLG+VGLGR
Sbjct: 121 VEEVADTTMCLILNLYRRTYWLANMVREGKKFTGPEQVRDAAQGCARIRGDTLGLVGLGR 180
Query: 186 IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNH 245
IGSAVALRAK FGFNV FYDPYLPDGIEKSLGL RVYTLQ+LLF SDCVSLHCTLNEHNH
Sbjct: 181 IGSAVALRAKVFGFNVSFYDPYLPDGIEKSLGLNRVYTLQELLFHSDCVSLHCTLNEHNH 240
Query: 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNL 305
HLINEFTIKQMRPGAFLVNTARGGLVDD++LA ALKQGRIRAAALDVHE+EPYNVFQG L
Sbjct: 241 HLINEFTIKQMRPGAFLVNTARGGLVDDEALAVALKQGRIRAAALDVHENEPYNVFQGAL 300
Query: 306 KDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFPSAGGGGL 365
KDAPN+LCTPHAAFYSEA+ TELREMAASEIRRAI+G IP+CLRNCVNKEYF + GG
Sbjct: 301 KDAPNLLCTPHAAFYSEAATTELREMAASEIRRAIIGNIPECLRNCVNKEYFLRSSTGGG 360
Query: 366 PAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAAAAIGTLPPVQ 425
G Y A GINGG YY+ +Q
Sbjct: 361 AGG--YSEA----------------------GINGG-------YYSGG----------LQ 379
Query: 426 QAHSTTP 432
QAHSTTP
Sbjct: 380 QAHSTTP 386
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157109874|ref|XP_001650861.1| 2-hydroxyacid dehydrogenase [Aedes aegypti] gi|108878898|gb|EAT43123.1| AAEL005400-PD [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/352 (92%), Positives = 339/352 (96%)
Query: 6 MMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHE 65
M+ KR R+ +RGPISNGPMQ+RPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHE
Sbjct: 1 MLPKRSRLGEVRGPISNGPMQSRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHE 60
Query: 66 KVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYG 125
KVLNEAVGALMWHTIILTKEDLEKFK LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYG
Sbjct: 61 KVLNEAVGALMWHTIILTKEDLEKFKALRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYG 120
Query: 126 VEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGR 185
VEEVADTT+CLILNLYRRTYWLANMVREGKKFTGPEQ+R+AA GCARIRGDTLG+VGLGR
Sbjct: 121 VEEVADTTMCLILNLYRRTYWLANMVREGKKFTGPEQVRDAAQGCARIRGDTLGLVGLGR 180
Query: 186 IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNH 245
IGSAVALRAK FGFNV FYDPYLPDGIEKSLGLTRVYTLQ+LLF SDCVSLHCTLNEHNH
Sbjct: 181 IGSAVALRAKVFGFNVSFYDPYLPDGIEKSLGLTRVYTLQELLFHSDCVSLHCTLNEHNH 240
Query: 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNL 305
HLINEFTIKQMRPGAFLVNTARGGLVDD++LA ALKQGRIRAAALDVHE+EPYNVFQG L
Sbjct: 241 HLINEFTIKQMRPGAFLVNTARGGLVDDEALAHALKQGRIRAAALDVHENEPYNVFQGAL 300
Query: 306 KDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357
KDAPN+LCTPHAAFYSEA+ TELREMAASEIRRAI+G IPDCLRNCVNKEYF
Sbjct: 301 KDAPNLLCTPHAAFYSEAATTELREMAASEIRRAIIGNIPDCLRNCVNKEYF 352
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 501 | ||||||
| FB|FBgn0020496 | 476 | CtBP "C-terminal Binding Prote | 0.710 | 0.747 | 0.907 | 4.3e-180 | |
| UNIPROTKB|F1MYP4 | 419 | CTBP1 "Uncharacterized protein | 0.686 | 0.821 | 0.758 | 4.3e-143 | |
| UNIPROTKB|Q9YHU0 | 440 | ctbp1 "C-terminal-binding prot | 0.680 | 0.775 | 0.771 | 5.5e-143 | |
| UNIPROTKB|Q5ZIZ6 | 430 | CTBP1 "Uncharacterized protein | 0.686 | 0.8 | 0.770 | 1.8e-142 | |
| RGD|2441 | 430 | Ctbp1 "C-terminal binding prot | 0.686 | 0.8 | 0.767 | 2.3e-142 | |
| UNIPROTKB|Q9Z2F5 | 430 | Ctbp1 "C-terminal-binding prot | 0.686 | 0.8 | 0.767 | 2.3e-142 | |
| ZFIN|ZDB-GENE-010130-2 | 1156 | ctbp2 "C-terminal binding prot | 0.684 | 0.296 | 0.763 | 2.9e-142 | |
| UNIPROTKB|E1C7D4 | 472 | CTBP1 "Uncharacterized protein | 0.680 | 0.722 | 0.774 | 6.1e-142 | |
| MGI|MGI:1201685 | 441 | Ctbp1 "C-terminal binding prot | 0.680 | 0.773 | 0.771 | 7.8e-142 | |
| UNIPROTKB|D4A2Y2 | 441 | Ctbp1 "C-terminal-binding prot | 0.680 | 0.773 | 0.771 | 7.8e-142 |
| FB|FBgn0020496 CtBP "C-terminal Binding Protein" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1696 (602.1 bits), Expect = 4.3e-180, Sum P(3) = 4.3e-180
Identities = 324/357 (90%), Positives = 341/357 (95%)
Query: 1 MDKRKMMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQST 60
MDK MM KR R+D ++G +NGP+Q RPLVALLDGRDCSIEMPILKDVATVAFCDAQST
Sbjct: 1 MDKNLMMPKRSRID-VKGNFANGPLQARPLVALLDGRDCSIEMPILKDVATVAFCDAQST 59
Query: 61 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120
SEIHEKVLNEAVGALMWHTIILTKEDLEKFK LRIIVRIGSG DNIDVKAAGELGIAVCN
Sbjct: 60 SEIHEKVLNEAVGALMWHTIILTKEDLEKFKALRIIVRIGSGTDNIDVKAAGELGIAVCN 119
Query: 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGI 180
VPGYGVEEVADTT+CLILNLYRRTYWLANMVREGKKFTGPEQ+REAA GCARIRGDTLG+
Sbjct: 120 VPGYGVEEVADTTMCLILNLYRRTYWLANMVREGKKFTGPEQVREAAHGCARIRGDTLGL 179
Query: 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240
VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI+KSLGLTRVYTLQDLLFQSDCVSLHCTL
Sbjct: 180 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIDKSLGLTRVYTLQDLLFQSDCVSLHCTL 239
Query: 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300
NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDD++LA ALKQGRIRAAALDVHE+EPYNV
Sbjct: 240 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDETLALALKQGRIRAAALDVHENEPYNV 299
Query: 301 FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357
FQG LKDAPN++CTPHAAF+S+AS TELREMAA+EIRRAIVG IPD LRNCVNKEYF
Sbjct: 300 FQGALKDAPNLICTPHAAFFSDASATELREMAATEIRRAIVGNIPDVLRNCVNKEYF 356
|
|
| UNIPROTKB|F1MYP4 CTBP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1382 (491.5 bits), Expect = 4.3e-143, Sum P(2) = 4.3e-143
Identities = 261/344 (75%), Positives = 297/344 (86%)
Query: 13 MDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAV 72
M +R PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAV
Sbjct: 1 MAGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAV 60
Query: 73 GALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADT 132
GALM+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+
Sbjct: 61 GALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADS 120
Query: 133 TLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVAL 192
T+C ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLG++GLGR+G AVAL
Sbjct: 121 TMCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGVIGLGRVGQAVAL 180
Query: 193 RAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252
RAKAFGFNV+FYDPYL DG E++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT
Sbjct: 181 RAKAFGFNVLFYDPYLADGTERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 240
Query: 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNIL 312
+KQMR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++
Sbjct: 241 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 313 CTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
CTPHAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDH 344
|
|
| UNIPROTKB|Q9YHU0 ctbp1 "C-terminal-binding protein 1" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 1381 (491.2 bits), Expect = 5.5e-143, Sum P(2) = 5.5e-143
Identities = 263/341 (77%), Positives = 295/341 (86%)
Query: 16 IRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGAL 75
IR PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAVGAL
Sbjct: 15 IRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGAL 74
Query: 76 MWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLC 135
M+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+T+C
Sbjct: 75 MYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTMC 134
Query: 136 LILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAK 195
ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVALRAK
Sbjct: 135 HILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAK 194
Query: 196 AFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255
FGFNV FYDPYL DGIE++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FTIKQ
Sbjct: 195 TFGFNVFFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTIKQ 254
Query: 256 MRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTP 315
MR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++CTP
Sbjct: 255 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFTQGPLKDAPNLICTP 314
Query: 316 HAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
HAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++
Sbjct: 315 HAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDH 355
|
|
| UNIPROTKB|Q5ZIZ6 CTBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
Identities = 265/344 (77%), Positives = 298/344 (86%)
Query: 13 MDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAV 72
M IR PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAV
Sbjct: 1 MQGIRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAV 60
Query: 73 GALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADT 132
GALM+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+
Sbjct: 61 GALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADS 120
Query: 133 TLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVAL 192
T+C ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVAL
Sbjct: 121 TMCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVAL 180
Query: 193 RAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252
RAKAFGFNVIFYDPYL DG+E++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT
Sbjct: 181 RAKAFGFNVIFYDPYLSDGMERALGLQRVSTLQDLLFHSDCVTLHCNLNEHNHHLINDFT 240
Query: 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNIL 312
IKQMR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++
Sbjct: 241 IKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 313 CTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
CTPHAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDH 344
|
|
| RGD|2441 Ctbp1 "C-terminal binding protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1392 (495.1 bits), Expect = 2.3e-142, P = 2.3e-142
Identities = 264/344 (76%), Positives = 298/344 (86%)
Query: 13 MDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAV 72
M +R PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAV
Sbjct: 1 MSGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAV 60
Query: 73 GALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADT 132
GALM+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+
Sbjct: 61 GALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADS 120
Query: 133 TLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVAL 192
TLC ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVAL
Sbjct: 121 TLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVAL 180
Query: 193 RAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252
RAKAFGFNV+FYDPYL DGIE++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT
Sbjct: 181 RAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 240
Query: 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNIL 312
+KQMR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++
Sbjct: 241 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 313 CTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
CTPHAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDH 344
|
|
| UNIPROTKB|Q9Z2F5 Ctbp1 "C-terminal-binding protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1392 (495.1 bits), Expect = 2.3e-142, P = 2.3e-142
Identities = 264/344 (76%), Positives = 298/344 (86%)
Query: 13 MDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAV 72
M +R PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAV
Sbjct: 1 MSGVRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAV 60
Query: 73 GALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADT 132
GALM+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+
Sbjct: 61 GALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADS 120
Query: 133 TLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVAL 192
TLC ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVAL
Sbjct: 121 TLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVAL 180
Query: 193 RAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252
RAKAFGFNV+FYDPYL DGIE++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT
Sbjct: 181 RAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 240
Query: 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNIL 312
+KQMR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++
Sbjct: 241 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 313 CTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
CTPHAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDH 344
|
|
| ZFIN|ZDB-GENE-010130-2 ctbp2 "C-terminal binding protein 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1391 (494.7 bits), Expect = 2.9e-142, P = 2.9e-142
Identities = 262/343 (76%), Positives = 297/343 (86%)
Query: 15 SIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGA 74
SIR I NGPM RPLVALLDGRDC++EMPILKD+ATVAFCDAQST EIHEKVLNEAVGA
Sbjct: 772 SIRPQIMNGPMHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGA 831
Query: 75 LMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTL 134
+M+HTI LT+EDLEKFK LRII+RIGSG DNID+KAAGE+GIAVCN+P VEE AD+TL
Sbjct: 832 MMYHTITLTREDLEKFKALRIIIRIGSGYDNIDIKAAGEMGIAVCNIPSAAVEETADSTL 891
Query: 135 CLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRA 194
C ILNLYRR WL +REG + EQ+RE ASG ARIRG+TLG++G GR G AVA+RA
Sbjct: 892 CHILNLYRRNTWLYQAMREGTRVQSVEQIREVASGAARIRGETLGLIGFGRSGQAVAVRA 951
Query: 195 KAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254
KAFGFNVIFYDPYL DG+E+SLG+ RVYTLQDLL+QSDCVSLHC LNEHNHHLIN+FTIK
Sbjct: 952 KAFGFNVIFYDPYLQDGLERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIK 1011
Query: 255 QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCT 314
QMR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++CT
Sbjct: 1012 QMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFTQGPLKDAPNLICT 1071
Query: 315 PHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357
PH A+YSE + E+RE AA+EIRRAI GRIPD LRNCVNKE+F
Sbjct: 1072 PHTAWYSEQASLEMREAAATEIRRAITGRIPDSLRNCVNKEFF 1114
|
|
| UNIPROTKB|E1C7D4 CTBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1388 (493.7 bits), Expect = 6.1e-142, P = 6.1e-142
Identities = 264/341 (77%), Positives = 297/341 (87%)
Query: 16 IRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGAL 75
IR PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAVGAL
Sbjct: 46 IRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGAL 105
Query: 76 MWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLC 135
M+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+T+C
Sbjct: 106 MYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTMC 165
Query: 136 LILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAK 195
ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVALRAK
Sbjct: 166 HILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAK 225
Query: 196 AFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255
AFGFNVIFYDPYL DG+E++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FTIKQ
Sbjct: 226 AFGFNVIFYDPYLSDGMERALGLQRVSTLQDLLFHSDCVTLHCNLNEHNHHLINDFTIKQ 285
Query: 256 MRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTP 315
MR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++CTP
Sbjct: 286 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 345
Query: 316 HAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
HAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++
Sbjct: 346 HAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDH 386
|
|
| MGI|MGI:1201685 Ctbp1 "C-terminal binding protein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
Identities = 263/341 (77%), Positives = 297/341 (87%)
Query: 16 IRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGAL 75
+R PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAVGAL
Sbjct: 15 VRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGAL 74
Query: 76 MWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLC 135
M+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+TLC
Sbjct: 75 MYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLC 134
Query: 136 LILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAK 195
ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVALRAK
Sbjct: 135 HILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAK 194
Query: 196 AFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255
AFGFNV+FYDPYL DGIE++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT+KQ
Sbjct: 195 AFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ 254
Query: 256 MRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTP 315
MR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++CTP
Sbjct: 255 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 314
Query: 316 HAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
HAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++
Sbjct: 315 HAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDH 355
|
|
| UNIPROTKB|D4A2Y2 Ctbp1 "C-terminal-binding protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
Identities = 263/341 (77%), Positives = 297/341 (87%)
Query: 16 IRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGAL 75
+R PI NGPM RPLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAVGAL
Sbjct: 15 VRPPIMNGPMHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGAL 74
Query: 76 MWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLC 135
M+HTI LT+EDLEKFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP VEE AD+TLC
Sbjct: 75 MYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLC 134
Query: 136 LILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAK 195
ILNLYRRT WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+G AVALRAK
Sbjct: 135 HILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAK 194
Query: 196 AFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255
AFGFNV+FYDPYL DGIE++LGL RV TLQDLLF SDCV+LHC LNEHNHHLIN+FT+KQ
Sbjct: 195 AFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ 254
Query: 256 MRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTP 315
MR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LKDAPN++CTP
Sbjct: 255 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 314
Query: 316 HAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEY 356
HAA+YSE + E+RE AA EIRRAI GRIPD L+NCVNK++
Sbjct: 315 HAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDH 355
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9Z2F5 | CTBP1_RAT | 1, ., 1, ., 1, ., - | 0.7052 | 0.7704 | 0.8976 | yes | N/A |
| Q9YHU0 | CTBP1_XENLA | 1, ., 1, ., 1, ., - | 0.7040 | 0.7664 | 0.8727 | N/A | N/A |
| O46036 | CTBP_DROME | No assigned EC number | 0.9075 | 0.7105 | 0.7478 | no | N/A |
| O88712 | CTBP1_MOUSE | 1, ., 1, ., 1, ., - | 0.7081 | 0.7644 | 0.8684 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 501 | |||
| cd05299 | 312 | cd05299, CtBP_dh, C-terminal binding protein (CtBP | 1e-149 | |
| cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 2e-98 | |
| cd12172 | 306 | cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat | 1e-88 | |
| pfam00389 | 312 | pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy | 8e-84 | |
| COG1052 | 324 | COG1052, LdhA, Lactate dehydrogenase and related d | 1e-83 | |
| cd12173 | 304 | cd12173, PGDH_4, Phosphoglycerate dehydrogenases, | 3e-82 | |
| COG0111 | 324 | COG0111, SerA, Phosphoglycerate dehydrogenase and | 4e-80 | |
| cd12175 | 311 | cd12175, 2-Hacid_dh_11, Putative D-isomer specific | 3e-76 | |
| cd05301 | 309 | cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr | 1e-75 | |
| cd01619 | 323 | cd01619, LDH_like, D-Lactate and related Dehydroge | 4e-74 | |
| cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 2e-73 | |
| cd05303 | 301 | cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P | 2e-72 | |
| cd12178 | 317 | cd12178, 2-Hacid_dh_13, Putative D-isomer specific | 2e-71 | |
| PRK13581 | 526 | PRK13581, PRK13581, D-3-phosphoglycerate dehydroge | 1e-69 | |
| cd12168 | 321 | cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l | 2e-67 | |
| pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 9e-67 | |
| cd12187 | 329 | cd12187, LDH_like_1, D-Lactate and related Dehydro | 2e-65 | |
| cd12171 | 310 | cd12171, 2-Hacid_dh_10, Putative D-isomer specific | 5e-65 | |
| cd12177 | 321 | cd12177, 2-Hacid_dh_12, Putative D-isomer specific | 1e-64 | |
| cd12174 | 305 | cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat | 2e-63 | |
| cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 1e-61 | |
| cd12186 | 329 | cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr | 2e-61 | |
| PRK08410 | 311 | PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P | 7e-61 | |
| cd12183 | 328 | cd12183, LDH_like_2, D-Lactate and related Dehydro | 2e-60 | |
| TIGR01327 | 525 | TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas | 1e-59 | |
| cd12185 | 322 | cd12185, HGDH_LDH_like, Putative Lactate dehydroge | 1e-54 | |
| cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 2e-54 | |
| PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 3e-54 | |
| PRK06932 | 314 | PRK06932, PRK06932, glycerate dehydrogenase; Provi | 3e-50 | |
| PRK06487 | 317 | PRK06487, PRK06487, glycerate dehydrogenase; Provi | 6e-50 | |
| cd12156 | 301 | cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, | 5e-46 | |
| cd12176 | 304 | cd12176, PGDH_3, Phosphoglycerate dehydrogenases, | 1e-45 | |
| cd12167 | 330 | cd12167, 2-Hacid_dh_8, Putative D-isomer specific | 2e-45 | |
| cd05302 | 348 | cd05302, FDH, NAD-dependent Formate Dehydrogenase | 5e-44 | |
| cd12184 | 330 | cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro | 8e-44 | |
| cd12157 | 318 | cd12157, PTDH, Thermostable Phosphite Dehydrogenas | 5e-43 | |
| PRK11790 | 409 | PRK11790, PRK11790, D-3-phosphoglycerate dehydroge | 7e-43 | |
| cd12179 | 306 | cd12179, 2-Hacid_dh_14, Putative D-isomer specific | 2e-41 | |
| PRK07574 | 385 | PRK07574, PRK07574, formate dehydrogenase; Provisi | 4e-39 | |
| PRK08605 | 332 | PRK08605, PRK08605, D-lactate dehydrogenase; Valid | 5e-39 | |
| cd12158 | 343 | cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh | 9e-39 | |
| cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 4e-38 | |
| cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 1e-37 | |
| PRK15409 | 323 | PRK15409, PRK15409, bifunctional glyoxylate/hydrox | 2e-37 | |
| cd12155 | 314 | cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2 | 3e-34 | |
| PLN02306 | 386 | PLN02306, PLN02306, hydroxypyruvate reductase | 2e-31 | |
| PLN02928 | 347 | PLN02928, PLN02928, oxidoreductase family protein | 2e-30 | |
| PRK12480 | 330 | PRK12480, PRK12480, D-lactate dehydrogenase; Provi | 6e-29 | |
| cd12180 | 308 | cd12180, 2-Hacid_dh_15, Putative D-isomer specific | 2e-28 | |
| PLN03139 | 386 | PLN03139, PLN03139, formate dehydrogenase; Provisi | 3e-25 | |
| PRK00257 | 381 | PRK00257, PRK00257, erythronate-4-phosphate dehydr | 5e-23 | |
| cd12164 | 306 | cd12164, GDH_like_2, Putative glycerate dehydrogen | 3e-22 | |
| cd12166 | 300 | cd12166, 2-Hacid_dh_7, Putative D-isomer specific | 4e-21 | |
| cd12159 | 303 | cd12159, 2-Hacid_dh_2, Putative D-isomer specific | 7e-21 | |
| PRK06436 | 303 | PRK06436, PRK06436, glycerate dehydrogenase; Provi | 5e-18 | |
| cd12160 | 310 | cd12160, 2-Hacid_dh_3, Putative D-isomer specific | 7e-17 | |
| cd12163 | 334 | cd12163, 2-Hacid_dh_5, Putative D-isomer specific | 2e-15 | |
| PRK15438 | 378 | PRK15438, PRK15438, erythronate-4-phosphate dehydr | 6e-15 | |
| cd12170 | 294 | cd12170, 2-Hacid_dh_9, Putative D-isomer specific | 6e-15 | |
| cd12154 | 310 | cd12154, FDH_GDH_like, Formate/glycerate dehydroge | 2e-11 | |
| PRK15469 | 312 | PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr | 6e-08 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 7e-06 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 2e-05 | |
| pfam05518 | 753 | pfam05518, Totivirus_coat, Totivirus coat protein | 2e-05 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 7e-05 | |
| PRK14959 | 624 | PRK14959, PRK14959, DNA polymerase III subunits ga | 2e-04 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 4e-04 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 7e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.001 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 0.001 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 0.002 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 0.002 | |
| PRK13875 | 440 | PRK13875, PRK13875, conjugal transfer protein TrbL | 0.002 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 0.003 |
| >gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor | Back alignment and domain information |
|---|
Score = 429 bits (1105), Expect = e-149
Identities = 160/323 (49%), Positives = 193/323 (59%), Gaps = 15/323 (4%)
Query: 29 PLVALLDGR--DCSIEMPILKDVATVAFCDAQS--TSEIHEKVLNEAVGALMWHTIILTK 84
P V + D D IE +L++ A V DAQS E+ E +A L+ + + T
Sbjct: 1 PKVVITDYDFPDLDIEREVLEE-AGVELVDAQSRTEDELIEAA-ADADALLVQYAPV-TA 57
Query: 85 EDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRT 144
E +E L++IVR G GVDN+DV AA E GI VCNVP Y EEVAD L LIL L R+
Sbjct: 58 EVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKL 117
Query: 145 YWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY 204
+L VR G R+RG TLG+VG GRIG AVA RAKAFGF VI Y
Sbjct: 118 PFLDRAVRAGGWDWT------VGGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAY 171
Query: 205 DPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264
DPY+PDG+ +LG RV +L +LL +SD VSLHC L HLI+ + M+PGAFLVN
Sbjct: 172 DPYVPDGVA-ALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVN 230
Query: 265 TARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEAS 324
TARGGLVD+ +LA ALK GRI AALDV E EP L APN++ TPHAA+YSE S
Sbjct: 231 TARGGLVDEAALARALKSGRIAGAALDVLEEEPPP-ADSPLLSAPNVILTPHAAWYSEES 289
Query: 325 CTELREMAASEIRRAIVGRIPDC 347
ELR AA E+ R + G P
Sbjct: 290 LAELRRKAAEEVVRVLRGEPPRN 312
|
The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312 |
| >gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
|---|
Score = 298 bits (766), Expect = 2e-98
Identities = 126/309 (40%), Positives = 163/309 (52%), Gaps = 10/309 (3%)
Query: 31 VALLDGRDCSIEMPILKD-VATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEK 89
V +L+ + L+ V D E+ E +L +A ++ T +T E L K
Sbjct: 2 VLVLEPLFPPEALEALEATGFEVIVADDLLADEL-EALLADADALIVSSTTPVTAEVLAK 60
Query: 90 FKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLAN 149
L+ I G+GVDNID+ AA + GI V NVPG E VA+ L L+L L RR
Sbjct: 61 APKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADA 120
Query: 150 MVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP 209
VR G A + G T+GIVGLGRIG VA R +AFG V++YD
Sbjct: 121 AVRRGWG------WLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRK 174
Query: 210 DGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGG 269
E+ LG V +L +LL QSD V LH L HLINE + M+PGA LVNTARGG
Sbjct: 175 PEPEEDLGFRVV-SLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGG 233
Query: 270 LVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329
LVD+D+L ALK G+I AALDV E EP L + PN++ TPH A Y+E + +
Sbjct: 234 LVDEDALLRALKSGKIAGAALDVFEPEP-LPADHPLLELPNVILTPHIAGYTEEARERMA 292
Query: 330 EMAASEIRR 338
E+A + R
Sbjct: 293 EIAVENLER 301
|
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
| >gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 273 bits (701), Expect = 1e-88
Identities = 114/283 (40%), Positives = 153/283 (54%), Gaps = 17/283 (6%)
Query: 59 STSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAV 118
+ E+ E L +A G + I T+E L L++I R G G DNID++AA + GI V
Sbjct: 37 TEEELIEL-LKDADGVIAGLDPI-TEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVV 94
Query: 119 CNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGK--KFTGPEQLREAASGCARIRGD 176
N PG VA+ T+ L+L L R+ VR G + G E + G
Sbjct: 95 TNTPGANSNSVAELTIGLMLALARQIPQADREVRAGGWDRPVGTE-----------LYGK 143
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSL 236
TLGI+GLGRIG AVA R FG V+ YDPY + K G+ V +L++LL +SD +SL
Sbjct: 144 TLGIIGLGRIGKAVARRLSGFGMKVLAYDPYPDEEFAKEHGVEFV-SLEELLKESDFISL 202
Query: 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESE 296
H L HLIN + M+PGA L+NTARGGLVD+++L ALK GRI AALDV E E
Sbjct: 203 HLPLTPETRHLINAAELALMKPGAILINTARGGLVDEEALYEALKSGRIAGAALDVFEEE 262
Query: 297 PYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRA 339
P L + PN++ TPH ++ + + MAA +
Sbjct: 263 PPPA-DSPLLELPNVILTPHIGASTKEAVLRMGTMAAQNVIDV 304
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306 |
| >gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 8e-84
Identities = 110/327 (33%), Positives = 147/327 (44%), Gaps = 22/327 (6%)
Query: 33 LLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTII-LTKEDLEKFK 91
L+ E+ +LK+ V D T E+ E + AL+ + +T E LE
Sbjct: 2 LITDPLRPEELELLKEGGEVEVHDELLTEELLEAA--KDADALIVRSTTPVTAEVLEAAP 59
Query: 92 TLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMV 151
L++I R G GVDNID+ AA E GI V NVPGY E VA+ T+ LIL L RR V
Sbjct: 60 GLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASV 119
Query: 152 REGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG 211
R G G E + G TLG++G G IG A AKA G V+ YDPY
Sbjct: 120 RAGDWKKGGPIGLE-------LYGKTLGVIGGGGIGGIGAAIAKALGMGVVAYDPYPNPE 172
Query: 212 IEKSLGLTRVYTLQDLLFQSDC-----VSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266
+ G L DLL ++L H+I ++ + N
Sbjct: 173 RAEEGG--VEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNAR 230
Query: 267 RGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326
GG++++ AL + I AAALDV E EP V L D PN++ TPH A +E +
Sbjct: 231 GGGVIEEA-ALDALLEEGIAAAALDVVEEEPPPVNSP-LLDLPNVILTPHIAGATEEAQE 288
Query: 327 ELREMAASEIRRAIVGRIPDCLRNCVN 353
+ E AA + + G P N VN
Sbjct: 289 NMAEEAAENLLAFLKGGTP---PNAVN 312
|
This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312 |
| >gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 1e-83
Identities = 125/313 (39%), Positives = 165/313 (52%), Gaps = 10/313 (3%)
Query: 46 LKDVATVAFCDAQSTSEIHE-KVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVD 104
LK+ V + T + + L +A + + + E LEK L++I +G D
Sbjct: 19 LKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYD 78
Query: 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLR 164
N+D++AA E GI V NVPGY E VA+ + LIL L RR + VREG
Sbjct: 79 NVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDP 138
Query: 165 EAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTL 224
+RG TLGI+GLGRIG AVA R K FG V++YD EK LG V L
Sbjct: 139 LLGF---DLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYV-DL 194
Query: 225 QDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR 284
+LL +SD +SLHC L HLIN + +M+PGA LVNTARGGLVD+ +L ALK G+
Sbjct: 195 DELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGK 254
Query: 285 IRAAALDVHESEPYNVFQG--NLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVG 342
I A LDV E+EP L + PN++ TPH A +E + + E+A + G
Sbjct: 255 IAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDG 314
Query: 343 RIPDCLRNCVNKE 355
+P N VN E
Sbjct: 315 GVPP---NEVNPE 324
|
Length = 324 |
| >gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 256 bits (658), Expect = 3e-82
Identities = 114/272 (41%), Positives = 149/272 (54%), Gaps = 27/272 (9%)
Query: 81 ILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNL 140
+T E +E L++I R G GVDNIDV+AA GI V N PG VA+ T+ L+L L
Sbjct: 51 KVTAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLAL 110
Query: 141 YRRTYWLANMVREG----KKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKA 196
R +R G KKF G E +RG TLGIVGLGRIG VA RA+A
Sbjct: 111 ARNIPQADASLRAGKWDRKKFMGVE-----------LRGKTLGIVGLGRIGREVARRARA 159
Query: 197 FGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQM 256
FG V+ YDPY+ + G + +L +LL ++D +SLH L LIN + +M
Sbjct: 160 FGMKVLAYDPYISAERAAAGG-VELVSLDELLAEADFISLHTPLTPETRGLINAEELAKM 218
Query: 257 RPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGN-LKDAPNILCTP 315
+PGA L+NTARGG+VD+ +LA ALK G+I AALDV E EP + L PN++ TP
Sbjct: 219 KPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEP--PPADSPLLGLPNVILTP 276
Query: 316 HAAFYSEASCTELRE----MAASEIRRAIVGR 343
H AS E +E AA ++ + G
Sbjct: 277 HLG----ASTEEAQERVAVDAAEQVLAVLAGE 304
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 4e-80
Identities = 114/294 (38%), Positives = 155/294 (52%), Gaps = 21/294 (7%)
Query: 70 EAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEV 129
+A+ + +T+E L L+ I R G+GVDNID++AA + GI V N PG V
Sbjct: 47 DALIVSVTP---VTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISV 103
Query: 130 ADTTLCLILNLYRRTYWLANMVREG----KKFTGPEQLREAASGCARIRGDTLGIVGLGR 185
A+ L L+L L RR R G K F G E + G T+GI+GLGR
Sbjct: 104 AELVLALLLALARRIPDADASQRRGEWDRKAFRGTE-----------LAGKTVGIIGLGR 152
Query: 186 IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNH 245
IG AVA R KAFG VI YDPY P G+ V +L +LL ++D ++LH L
Sbjct: 153 IGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETR 212
Query: 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGN- 304
LIN + +M+PGA L+N ARGG+VD+D+L AAL G+I AALDV E EP + +
Sbjct: 213 GLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEP--LPADSP 270
Query: 305 LKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFP 358
L D PN++ TPH ++ + + E+ A I R + G V+ E
Sbjct: 271 LWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVNNAPEVDLERGY 324
|
Length = 324 |
| >gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 241 bits (618), Expect = 3e-76
Identities = 104/269 (38%), Positives = 144/269 (53%), Gaps = 11/269 (4%)
Query: 79 TIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLIL 138
++ E L LR+I + G G+D +D++AA GI V N+PG E VA+ + L+L
Sbjct: 52 RKVIDAELLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLML 111
Query: 139 NLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFG 198
L RR +R G+ R + G T+GIVGLG IG AVA R + FG
Sbjct: 112 ALLRRLPEADRELRAGRWG------RPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFG 165
Query: 199 FNVIFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMR 257
VI+YD + P+ EK LG+ V L +LL +SD VSLH L HLI + M+
Sbjct: 166 VEVIYYDRFRDPEAEEKDLGVRYV-ELDELLAESDVVSLHVPLTPETRHLIGAEELAAMK 224
Query: 258 PGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGN-LKDAPNILCTPH 316
PGA L+NTARGGLVD+++L AAL+ G + A LDV EP + + L N++ TPH
Sbjct: 225 PGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEP--LPPDDPLLRLDNVILTPH 282
Query: 317 AAFYSEASCTELREMAASEIRRAIVGRIP 345
A ++ S + + A I R + G P
Sbjct: 283 IAGVTDESYQRMAAIVAENIARLLRGEPP 311
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311 |
| >gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH) | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 1e-75
Identities = 107/278 (38%), Positives = 140/278 (50%), Gaps = 12/278 (4%)
Query: 43 MPILKDVATVAFCD---AQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRI 99
+ +L++ V D E+ E A G L T + E L+ L++I
Sbjct: 14 LALLREGFEVEVWDEDRPLPREELLEAA-KGADGLLCTLTDKIDAELLDAAPPLKVIANY 72
Query: 100 GSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGK-KFT 158
G D+IDV AA GI V N P + AD L+L RR VR G+ K
Sbjct: 73 SVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAARRVVEGDRFVRAGEWKGW 132
Query: 159 GPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGL 218
P L G + G TLGIVG+GRIG AVA RAK FG +++++ E+ LG
Sbjct: 133 SPTLL----LG-TDLHGKTLGIVGMGRIGQAVARRAKGFGMKILYHNRSRKPEAEEELGA 187
Query: 219 TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278
V +L +LL +SD VSLHC L HLIN + M+P A L+NTARGG+VD+D+L
Sbjct: 188 RYV-SLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGVVDEDALVE 246
Query: 279 ALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPH 316
ALK G+I A LDV E EP L PN++ PH
Sbjct: 247 ALKSGKIAGAGLDVFEPEPLPADHP-LLTLPNVVLLPH 283
|
D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309 |
| >gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 4e-74
Identities = 110/307 (35%), Positives = 150/307 (48%), Gaps = 22/307 (7%)
Query: 37 RDCSIEMPILKDV-ATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRI 95
+ IE ILK V + ++ A L T + E L+K L+
Sbjct: 11 DELEIEKEILKAGGVDVEIVTYLLNDDETAELAKGADAILTAFTDKIDAELLDKAPGLKF 70
Query: 96 IVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGK 155
I +G DNID+ A ELGI V NVP Y VA+ T+ LIL L R R+
Sbjct: 71 ISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRK--YIDERDKN 128
Query: 156 KFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS 215
+ L++A + T+G+VG G+IG AVA RAK FG VI YDP+ +E
Sbjct: 129 Q-----DLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYDPFRNPELEDK 183
Query: 216 LGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDS 275
G+ V +L++L SD +SLH L NHH+INE K M+ G ++NTARG LVD ++
Sbjct: 184 -GVKYV-SLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTARGSLVDTEA 241
Query: 276 LAAALKQGRIRAAALDVHESEP---YNVFQGN---------LKDAPNILCTPHAAFYSEA 323
L AL G+I A LDV E E +G L PN++ TPH AFY++
Sbjct: 242 LIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNVIITPHTAFYTDD 301
Query: 324 SCTELRE 330
+ + E
Sbjct: 302 ALKNMVE 308
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323 |
| >gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 2e-73
Identities = 103/268 (38%), Positives = 145/268 (54%), Gaps = 26/268 (9%)
Query: 80 IILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILN 139
++L E L + L++I + +G +N+D+ AA E GI V NVPGY + VA T L+L
Sbjct: 53 VVLDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLA 112
Query: 140 LYRRTYWLANMVREGK--------KFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVA 191
L R + ++V+ G+ + P + E + G TLGI+G G IG AVA
Sbjct: 113 LARLVAYHNDVVKAGEWQKSPDFCFWDYP--IIE-------LAGKTLGIIGYGNIGQAVA 163
Query: 192 LRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251
A+AFG V+F + L V +L +LL QSD +SLHC L +LIN
Sbjct: 164 RIARAFGMKVLFAERK----GAPPLREGYV-SLDELLAQSDVISLHCPLTPETRNLINAE 218
Query: 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGN--LKDAP 309
+ +M+PGA L+NTARGGLVD+ +LA AL G+I A LDV EP N LK AP
Sbjct: 219 ELAKMKPGAILINTARGGLVDEQALADALNSGKIAGAGLDVLSQEPPR--ADNPLLKAAP 276
Query: 310 NILCTPHAAFYSEASCTELREMAASEIR 337
N++ TPH A+ S + L ++ I+
Sbjct: 277 NLIITPHIAWASREARQRLMDILVDNIK 304
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
| >gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 2e-72
Identities = 100/239 (41%), Positives = 142/239 (59%), Gaps = 18/239 (7%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
+TKE ++ K L+II R G G+DNIDV+ A + GI V N PG VA+ + L+L+L
Sbjct: 53 VTKEVIDAAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLA 112
Query: 142 RRTYWLANMVREG----KKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAF 197
R + ++ G KK+ G E +RG TLGI+G GRIG VA A+A
Sbjct: 113 RFIHRANREMKLGKWNKKKYKGIE-----------LRGKTLGIIGFGRIGREVAKIARAL 161
Query: 198 GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMR 257
G NVI YDPY D LG+ V +L++LL SD +SLH L H+IN+ ++ M+
Sbjct: 162 GMNVIAYDPYPKDEQAVELGVKTV-SLEELLKNSDFISLHVPLTPETKHMINKKELELMK 220
Query: 258 PGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPH 316
GA ++NT+RGG++D+++L ALK G++ AALDV E+EP + L + PN+ TPH
Sbjct: 221 DGAIIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEPPPGSK--LLELPNVSLTPH 277
|
Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301 |
| >gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 2e-71
Identities = 114/272 (41%), Positives = 146/272 (53%), Gaps = 11/272 (4%)
Query: 83 TKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYR 142
KE ++ K L+II G+G DNIDV A E GI V N P E A+ T LIL L R
Sbjct: 56 DKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALAR 115
Query: 143 RTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVI 202
R ++R G F G L + G TLGI+G+GRIG AVA RAKAFG ++
Sbjct: 116 RIAEGDRLMRRGG-FLGWAPLFFLGH---ELAGKTLGIIGMGRIGQAVARRAKAFGMKIL 171
Query: 203 FYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAF 261
+Y+ + L + EK LG T V L +LL +SD VSLH HHLI+ K M+P A+
Sbjct: 172 YYNRHRLSEETEKELGATYV-DLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAY 230
Query: 262 LVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYS 321
L+N ARG LVD+ +L ALK G I AALDV E EP LK N++ TPH +
Sbjct: 231 LINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPE--VSPELKKLDNVILTPHIGNAT 288
Query: 322 EASCTELREMAASEIRRAIVGRIPDCLRNCVN 353
+ + + AA I + G+ P N VN
Sbjct: 289 VEARDAMAKEAADNIISFLEGKRPK---NIVN 317
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317 |
| >gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 1e-69
Identities = 111/279 (39%), Positives = 148/279 (53%), Gaps = 29/279 (10%)
Query: 83 TKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYR 142
T E LE K L++I R G GVDN+DV AA GI V N P A+ T+ L+L L R
Sbjct: 55 TAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALAR 114
Query: 143 RTYWLANMVREG----KKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFG 198
++ G KKF G E + G TLGI+GLGRIGS VA RAKAFG
Sbjct: 115 NIPQAHASLKAGKWERKKFMGVE-----------LYGKTLGIIGLGRIGSEVAKRAKAFG 163
Query: 199 FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258
VI YDPY+ LG+ V +L +LL ++D ++LH L LI + +M+P
Sbjct: 164 MKVIAYDPYISPERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKP 222
Query: 259 GAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAA 318
G ++N ARGG++D+ +LA ALK G++ AALDV E EP L + PN++ TPH
Sbjct: 223 GVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEP--PTDSPLFELPNVVVTPHLG 280
Query: 319 FYSEASCTELREMA----ASEIRRAIVGRIPDCLRNCVN 353
AS E +E A ++ A+ G + N VN
Sbjct: 281 ----ASTAEAQENVAIQVAEQVIDALRG---GPVPNAVN 312
|
Length = 526 |
| >gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 2e-67
Identities = 97/254 (38%), Positives = 136/254 (53%), Gaps = 9/254 (3%)
Query: 90 FKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLAN 149
+L+II G+G D IDV A + GI V N PG E ADT L LIL R
Sbjct: 74 PPSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAER 133
Query: 150 MVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY-L 208
R GK + + RG TLGI+GLG IG A+A +A AFG +I+++ L
Sbjct: 134 SARAGKWRGFLD-----LTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRL 188
Query: 209 PDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARG 268
P+ +EK+L T +L +LL QSD VSL+C L HLIN+ +M+ G +VNTARG
Sbjct: 189 PEELEKALA-TYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARG 247
Query: 269 GLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTEL 328
++D+D+L AL+ G++ +A LDV E+EP V G L PN+ PH + + ++
Sbjct: 248 AVIDEDALVDALESGKVASAGLDVFENEP-EVNPG-LLKMPNVTLLPHMGTLTVETQEKM 305
Query: 329 REMAASEIRRAIVG 342
E+ I +
Sbjct: 306 EELVLENIEAFLET 319
|
D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321 |
| >gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 9e-67
Identities = 90/185 (48%), Positives = 108/185 (58%), Gaps = 10/185 (5%)
Query: 134 LCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALR 193
L L+L L RR VR G+ RE + G T+GI+GLGRIG AVA R
Sbjct: 1 LALLLALARRIPEADRQVRAGRWRPDALLGRE-------LSGKTVGIIGLGRIGRAVARR 53
Query: 194 AKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253
KAFG VI YD Y P ++LG V +L +LL +SD VSLH L HLIN +
Sbjct: 54 LKAFGMKVIAYDRY-PKAEAEALGARYV-SLDELLAESDVVSLHLPLTPETRHLINAERL 111
Query: 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILC 313
M+PGA L+NTARGGLVD+D+L AALK GRI AALDV E EP L + PN++
Sbjct: 112 ALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPL-PPDHPLLELPNVIL 170
Query: 314 TPHAA 318
TPH A
Sbjct: 171 TPHIA 175
|
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
| >gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 2e-65
Identities = 100/285 (35%), Positives = 140/285 (49%), Gaps = 35/285 (12%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
L E LEK L++I +G D+ID++A E GIAVCNVP YG VA+ L+L L
Sbjct: 53 LDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALS 112
Query: 142 RRTYWLANMVREG----KKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAF 197
R+ R G G E + G TLG+VG GRIG VA A+ F
Sbjct: 113 RKLREAIERTRRGDFSQAGLRGFE-----------LAGKTLGVVGTGRIGRRVARIARGF 161
Query: 198 GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMR 257
G V+ YD + + + LG V +L++LL +SD +SLH HHLIN M+
Sbjct: 162 GMKVLAYDVVPDEELAERLGFRYV-SLEELLQESDIISLHVPYTPQTHHLINRENFALMK 220
Query: 258 PGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP------YNVF--------QG 303
PGA L+NTARG +VD ++L ALK+G++ A LDV E E +
Sbjct: 221 PGAVLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKK 280
Query: 304 NLKD-----APNILCTPHAAFYSEASCTELREMAASEIRRAIVGR 343
L D PN++ TPH A+ ++ + + + I+ G+
Sbjct: 281 LLADHALLRKPNVIITPHVAYNTKEALERILDTTVENIKAFAAGQ 325
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 5e-65
Identities = 106/291 (36%), Positives = 149/291 (51%), Gaps = 31/291 (10%)
Query: 62 EIHEKVLNEAVGA--LMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVC 119
E E++L A L+ H +TK+ +E L++I G +N+DV+AA E GI V
Sbjct: 35 EPEEELLEALKDADILITHFAPVTKKVIEAAPKLKLIGVCRGGPENVDVEAATERGIPVL 94
Query: 120 NVPGYGVEEVADTTLCLILNLYRRT----YWLANMVREGK----KFTGPEQLREAASGCA 171
N PG E VA+ T+ L+L R L + GPE
Sbjct: 95 NTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPE---------- 144
Query: 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQS 231
+RG T+GIVG G IG VA R KAFG V+ YDPY+ ++ G+ +V +L++LL +S
Sbjct: 145 -LRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVYDPYVDPEKIEADGVKKV-SLEELLKRS 202
Query: 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291
D VSLH L +I M+P A+ +NTAR GLVD+D+L AL++G+I AALD
Sbjct: 203 DVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIGGAALD 262
Query: 292 VHESEPYNVFQGN-LKDAPNILCTPHAAFYSEASC-TELR--EMAASEIRR 338
V EP + + L N+ TPH A A+ R E+ A E++R
Sbjct: 263 VFPEEP--LPADHPLLKLDNVTLTPHIA---GATRDVAERSPEIIAEELKR 308
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 1e-64
Identities = 114/333 (34%), Positives = 163/333 (48%), Gaps = 32/333 (9%)
Query: 32 ALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTII-------LTK 84
+ G+ + LK + V + I K L E L + II K
Sbjct: 7 SSSFGQYFPEHIQRLKKIGYVDRFEVPPD--ISGKALAEK---LKGYDIIIASVTPNFDK 61
Query: 85 EDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYG-VEEVADTTLCLILNLYRR 143
E E L++I R G G DN+D+KAA E G+ V VPG + VA+ + LIL + R+
Sbjct: 62 EFFEYNDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVLRK 121
Query: 144 TYWLANMVREGK-----KFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVA-LRAKAF 197
+ V+EGK F G E + G T+GI+G G IGS VA + + F
Sbjct: 122 INQASEAVKEGKWTERANFVGHE-----------LSGKTVGIIGYGNIGSRVAEILKEGF 170
Query: 198 GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMR 257
V+ YDPY+ + + K G V +L++LL +SD +SLH L E +H+INE +M+
Sbjct: 171 NAKVLAYDPYVSEEVIKKKGAKPV-SLEELLAESDIISLHAPLTEETYHMINEKAFSKMK 229
Query: 258 PGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHA 317
G LVNTARG L+D+++L ALK G+I A LDV E EP L N++ TPH
Sbjct: 230 KGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHY-ENVVITPHI 288
Query: 318 AFYSEASCTELREMAASEIRRAIVGRIPDCLRN 350
Y+ S + E +I + G+ P + N
Sbjct: 289 GAYTYESLYGMGEKVVDDIEDFLAGKEPKGILN 321
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321 |
| >gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 2e-63
Identities = 101/285 (35%), Positives = 141/285 (49%), Gaps = 38/285 (13%)
Query: 85 EDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRT 144
D++ +L+ I R G+GV+NIDV AA + GI V N PG VA+ + ++L L R
Sbjct: 43 HDMDFAPSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNI 102
Query: 145 Y----WLANM--------VREGKK-FTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVA 191
W+ N V +GKK F G E +RG TLG++GLG IG VA
Sbjct: 103 IQAIKWVTNGDGDDISKGVEKGKKQFVGTE-----------LRGKTLGVIGLGNIGRLVA 151
Query: 192 LRAKAFGFNVIFYDPYLPDGIEKSLG--LTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249
A A G VI YDPYL L + RV +L++LL +D ++LH L + LIN
Sbjct: 152 NAALALGMKVIGYDPYLSVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLIN 211
Query: 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAP 309
+ +M+PGA L+N ARG +VD+++L AL +G++ D E L P
Sbjct: 212 AELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDFPEPA-------LLGHLP 264
Query: 310 NILCTPH-AAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVN 353
N++ TPH A EA MAA +I + + N VN
Sbjct: 265 NVIATPHLGASTEEAE-ENCAVMAARQIMDFLETGN---ITNSVN 305
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305 |
| >gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 1e-61
Identities = 98/270 (36%), Positives = 140/270 (51%), Gaps = 26/270 (9%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
L E +E K L++I +GVD++D++A E GI V N GY E VA+ T+ L ++L
Sbjct: 59 LPGEVIEACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLL 118
Query: 142 RRTYWLANMVREGKK---FTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFG 198
R VR G G E + G T+GIVG G IG VA KAFG
Sbjct: 119 RNIVPCDAAVRAGGTKAGLIGRE-----------LAGKTVGIVGTGAIGLRVARLFKAFG 167
Query: 199 FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258
V+ Y + K+LG+ V +L +LL +SD VSLH LN+ LI + + M+
Sbjct: 168 CKVLAYSRSEKEEA-KALGIEYV-SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKE 225
Query: 259 GAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP-----YNVFQGNLKDAPNILC 313
A L+NTARG +VD+++LA AL +G+I A +DV + EP Y + APN +
Sbjct: 226 SAILINTARGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLH-----APNTIL 280
Query: 314 TPHAAFYSEASCTELREMAASEIRRAIVGR 343
TPH AF +E + + E+ I + G+
Sbjct: 281 TPHVAFATEEAMEKRAEIVFDNIEAWLAGK 310
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
| >gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 203 bits (520), Expect = 2e-61
Identities = 106/276 (38%), Positives = 138/276 (50%), Gaps = 36/276 (13%)
Query: 78 HTIILTKEDLEKFK-------TLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVA 130
T+ +E EK LR GVD ID+ A E G+ + NVP Y +A
Sbjct: 52 QTLPYDEEVYEKLAEYGIKQIALRSA-----GVDMIDLDLAKENGLKITNVPAYSPRAIA 106
Query: 131 DTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCAR-IRGDTLGIVGLGRIGSA 189
+ + LNL R T + V +G R A R IR T+GI+G GRIGSA
Sbjct: 107 EFAVTQALNLLRNTPEIDRRVAKG-------DFRWAPGLIGREIRDLTVGIIGTGRIGSA 159
Query: 190 VALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249
A K FG VI YDPY +EK L +L+DLL Q+D +SLH L + NHHLIN
Sbjct: 160 AAKIFKGFGAKVIAYDPYPNPELEK-FLLYYD-SLEDLLKQADIISLHVPLTKENHHLIN 217
Query: 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESE------------- 296
+M+ GA LVN ARGGLVD +L AL G+I AALD +E+E
Sbjct: 218 AEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEI 277
Query: 297 PYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMA 332
V + L PN+L TPH AFY++ + + E++
Sbjct: 278 EDEVLK-ELIAMPNVLITPHIAFYTDTAVKNMVEIS 312
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 7e-61
Identities = 101/324 (31%), Positives = 164/324 (50%), Gaps = 29/324 (8%)
Query: 31 VALLDGR---DCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDL 87
+ +LD + D + + ++ S E+ E++ + + ++ + +++ KE L
Sbjct: 3 IVILDAKTLGDKDLS--VFEEFGDFQIYPTTSPEEVIERIKDANI--IITNKVVIDKEVL 58
Query: 88 EKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWL 147
+ L++I +G +N+D++ A + GIAV NV GY E VA T ++L+L R +
Sbjct: 59 SQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYY 118
Query: 148 ANMVREGK-----KFTG-PEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
V+ G+ FT L E I+G GI+GLG IG VA A+AFG V
Sbjct: 119 DRYVKSGEYSESPIFTHISRPLGE-------IKGKKWGIIGLGTIGKRVAKIAQAFGAKV 171
Query: 202 IFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAF 261
++Y G K+ RV +L++LL SD +S+H LNE +LI +K ++ GA
Sbjct: 172 VYYST---SGKNKNEEYERV-SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAI 227
Query: 262 LVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP---YNVFQGNLKDAPNILCTPHAA 318
L+N RGG+V++ LA AL + I A LDV E EP + ++K+ +L TPH A
Sbjct: 228 LINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPMEKNHPLL-SIKNKEKLLITPHIA 285
Query: 319 FYSEASCTELREMAASEIRRAIVG 342
+ S+ + L E I+ + G
Sbjct: 286 WASKEARKTLIEKVKENIKDFLEG 309
|
Length = 311 |
| >gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 2e-60
Identities = 94/237 (39%), Positives = 130/237 (54%), Gaps = 29/237 (12%)
Query: 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREG----KKF 157
G +N+D+KAA ELGI V VP Y VA+ + L+L L R+ + N VREG
Sbjct: 78 GFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREGNFSLDGL 137
Query: 158 TGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLG 217
G + + G T+G++G G+IG A A K FG V+ YDPY P+ LG
Sbjct: 138 LGFD-----------LHGKTVGVIGTGKIGQAFARILKGFGCRVLAYDPY-PNPELAKLG 185
Query: 218 LTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLA 277
+ V L +LL +SD +SLHC L HHLIN TI +M+ G L+NT+RGGL+D +L
Sbjct: 186 VEYV-DLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTKALI 244
Query: 278 AALKQGRIRAAALDVHESEPYNVFQGN----LKDA--------PNILCTPHAAFYSE 322
ALK G+I LDV+E E F+ + ++D PN+L T H AF+++
Sbjct: 245 EALKSGKIGGLGLDVYEEEAGLFFEDHSDEIIQDDVLARLLSFPNVLITGHQAFFTK 301
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328 |
| >gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 1e-59
Identities = 103/280 (36%), Positives = 146/280 (52%), Gaps = 28/280 (10%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
+T+E + L++I R G GVDNID++AA GI V N P A+ L ++L
Sbjct: 52 VTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAA 111
Query: 142 RRTYWLANMVREG----KKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAF 197
R ++EG K F G E + G TLG++GLGRIGS VA RAKAF
Sbjct: 112 RNIPQADASLKEGEWDRKAFMGTE-----------LYGKTLGVIGLGRIGSIVAKRAKAF 160
Query: 198 GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMR 257
G V+ YDPY+ + LG+ V L +LL ++D +++H L LI + +M+
Sbjct: 161 GMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMK 220
Query: 258 PGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHA 317
G +VN ARGG++D+ +L AL++G +RAAALDV E EP L D N++ TPH
Sbjct: 221 KGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPT--DNPLFDLDNVIATPHL 278
Query: 318 AFYSEASCTELRE----MAASEIRRAIVGRIPDCLRNCVN 353
AS E +E A ++ A+ G + N VN
Sbjct: 279 G----ASTREAQENVATQVAEQVLDALKG---LPVPNAVN 311
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525 |
| >gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 1e-54
Identities = 100/281 (35%), Positives = 145/281 (51%), Gaps = 42/281 (14%)
Query: 78 HTIILTKEDLEKFKTL-------RIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVA 130
++ E LEK K R I G D+ID+ AA ELGI V NV Y VA
Sbjct: 52 GKSKISAELLEKLKEAGVKYISTRSI-----GYDHIDLDAAKELGIKVSNVT-YSPNSVA 105
Query: 131 DTTLCLILNLYRRTYWLANMVR-EGKKFT-GPEQLREAASGCARIRGDTLGIVGLGRIGS 188
D T+ L+L R+ + M R E ++ G Q RE +R T+G++G GRIG
Sbjct: 106 DYTVMLMLMALRKYKQI--MKRAEVNDYSLGGLQGRE-------LRNLTVGVIGTGRIGQ 156
Query: 189 AVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248
AV FG ++ YDPY + ++K V L L +SD ++LH L E +HLI
Sbjct: 157 AVIKNLSGFGCKILAYDPYPNEEVKK--YAEYV-DLDTLYKESDIITLHTPLTEETYHLI 213
Query: 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP---YNVFQGN- 304
N+ +I +M+ G ++NTARG L+D ++L L+ G+I AALDV E E YN +G+
Sbjct: 214 NKESIAKMKDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDI 273
Query: 305 --------LKDAPNILCTPHAAFYSEASCTELREMAASEIR 337
L+ PN++ TPH AFY++ + + +M + I
Sbjct: 274 LSNRELAILRSFPNVILTPHMAFYTDQA---VSDMVENSIE 311
|
This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322 |
| >gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 2e-54
Identities = 90/240 (37%), Positives = 124/240 (51%), Gaps = 13/240 (5%)
Query: 87 LEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYW 146
LE+ L+++V G +ID+ AA E GI VC G G A+ T LIL L R
Sbjct: 64 LERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGG-GPTATAELTWALILALARNLPE 122
Query: 147 LANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDP 206
+R G T + G TLGIVGLGRIG+ VA +AFG VI +
Sbjct: 123 EDAALRAGGWQTTLGT---------GLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWSS 173
Query: 207 YLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266
L + G+ + ++L SD VSLH L++ L+ + M+P A LVNT+
Sbjct: 174 NLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTS 233
Query: 267 RGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGN-LKDAPNILCTPHAAFYSEASC 325
RG LVD+ +L AAL+ GRI AALDV + EP + + L+ PN+L TPH + +E +
Sbjct: 234 RGPLVDEGALLAALRAGRIAGAALDVFDVEP--LPADHPLRGLPNVLLTPHIGYVTEEAY 291
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
| >gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 3e-54
Identities = 104/275 (37%), Positives = 136/275 (49%), Gaps = 12/275 (4%)
Query: 84 KEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRR 143
E E LRI+ G DNIDV+ A GI V N PG E AD L+L RR
Sbjct: 59 CEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARR 118
Query: 144 TYWLANMVREG---KKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFN 200
+ VR G ++ L + G T+GI+G GRIG AVA RAK FG
Sbjct: 119 LVEADHFVRSGEWKRRGVAWHPLMFLGYD---VYGKTIGIIGFGRIGQAVARRAKGFGMR 175
Query: 201 VIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260
+++Y EK LG L++LL +SD VSLH L + +H+INE +K M+P A
Sbjct: 176 ILYYSRTRKPEAEKELGAEYR-PLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTA 234
Query: 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFY 320
LVNTARG +VD +L ALK+G I A LDV E EPY L N++ PH
Sbjct: 235 ILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY--NEELFSLKNVVLAPHIGSA 292
Query: 321 SEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355
+ + + E+ A + G +P L VN+E
Sbjct: 293 TFEAREGMAELVAENLIAFKRGEVPPTL---VNRE 324
|
Length = 333 |
| >gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 3e-50
Identities = 97/272 (35%), Positives = 141/272 (51%), Gaps = 33/272 (12%)
Query: 80 IILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILN 139
++ T+E L + L++I +G +N+D+ AA ELGIAV NV GY V + L +I
Sbjct: 53 VLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFA 112
Query: 140 LYRRTYWLANMVREGKKFTGPEQLREAASGCAR----------IRGDTLGIVGLGRIGSA 189
L + L R+ QL + + C + +RG TLG+ G G +G+
Sbjct: 113 L---KHSLMGWYRD--------QLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTE 161
Query: 190 VALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV-YT-LQDLLFQSDCVSLHCTLNEHNHHL 247
V A+A G V++ + K + R YT +++L Q+D V+LHC L E +L
Sbjct: 162 VGRLAQALGMKVLYAE-------HKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNL 214
Query: 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP---YNVFQGN 304
IN T+ M+P AFL+NT RG LVD+ +L AL+ G+I AALDV EP N
Sbjct: 215 INAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQA 274
Query: 305 LKDAPNILCTPHAAFYSEASCTELREMAASEI 336
K PN+L TPH A+ S+++ T L A I
Sbjct: 275 AKRLPNLLITPHIAWASDSAVTTLVNKVAQNI 306
|
Length = 314 |
| >gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 6e-50
Identities = 106/307 (34%), Positives = 149/307 (48%), Gaps = 44/307 (14%)
Query: 56 DAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELG 115
DA + ++ E+ L A A+ + + L L L++I+ +G +N+D+ AA E G
Sbjct: 32 DATTPEQVAER-LRGAQVAIS-NKVALDAAALAAAPQLKLILVAATGTNNVDLAAARERG 89
Query: 116 IAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREG-----KKFTGPEQLREAASGC 170
I VCN GYG VA TL L+L L R V G +F +
Sbjct: 90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLD------FPI 143
Query: 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYD----PYLPDGIEKSLGLTRVYTLQD 226
+ G TLG++G G +G AVA A+AFG V+ P PD + L +
Sbjct: 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLP----------LDE 193
Query: 227 LLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286
LL Q D ++LHC L EH HLI + M+PGA L+NTARGGLVD+ +LA AL+ G +
Sbjct: 194 LLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253
Query: 287 AAALDVHESEPYNVFQGN---LKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGR 343
AA DV EP GN D P ++ TPH+A+ + E R+ IVG+
Sbjct: 254 GAATDVLSVEP--PVNGNPLLAPDIPRLIVTPHSAW------------GSREARQRIVGQ 299
Query: 344 IPDCLRN 350
+ + R
Sbjct: 300 LAENARA 306
|
Length = 317 |
| >gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 5e-46
Identities = 84/249 (33%), Positives = 121/249 (48%), Gaps = 12/249 (4%)
Query: 70 EAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEV 129
+ L+ + L +I G G D ID+ AA GI V N PG ++V
Sbjct: 42 RIRAVVTNGETGLSAALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDV 101
Query: 130 ADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSA 189
AD + L+L + RR VR G+ G L ++ G +GIVGLGRIG A
Sbjct: 102 ADLAVGLLLAVLRRIPAADRFVRAGRWPKGAFPLT------RKVSGKRVGIVGLGRIGRA 155
Query: 190 VALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249
+A R +AFG + ++ + +L +L +SD + + C HL+N
Sbjct: 156 IARRLEAFGMEIAYHGRRPKPD----VPYRYYASLLELAAESDVLVVACPGGPATRHLVN 211
Query: 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAP 309
++ + P LVN ARG +VD+ +L AAL++GRI A LDV E+EP NV L D
Sbjct: 212 AEVLEALGPDGVLVNVARGSVVDEAALIAALQEGRIAGAGLDVFENEP-NVPAA-LLDLD 269
Query: 310 NILCTPHAA 318
N++ TPH A
Sbjct: 270 NVVLTPHIA 278
|
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301 |
| >gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 1e-45
Identities = 92/269 (34%), Positives = 135/269 (50%), Gaps = 29/269 (10%)
Query: 82 LTKEDLEKFKTLRIIVRIGS---GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLIL 138
LT+E LE L + IG G + +D+ AA + GI V N P VA+ + I+
Sbjct: 54 LTEEVLEAAPKL---LAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEII 110
Query: 139 NLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFG 198
L RR G ++A+G +RG TLGI+G G IGS +++ A+A G
Sbjct: 111 MLARRLPDRNAAAHRG-------IWNKSATGSHEVRGKTLGIIGYGHIGSQLSVLAEALG 163
Query: 199 FNVIFYDPYLPDGIEKSLGL---TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255
VIFYD I + L L +V +L++LL ++D V+LH ++I I Q
Sbjct: 164 MRVIFYD------IAEKLPLGNARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQ 217
Query: 256 MRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYN---VFQGNLKDAPNIL 312
M+ GA L+N +RG +VD D+LA AL+ G + AA+DV EP + F L+ PN++
Sbjct: 218 MKKGAILINASRGTVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVI 277
Query: 313 CTPHAAFYSEASCTELREMAASEIRRAIV 341
TPH S E +E E+ +V
Sbjct: 278 LTPHIG----GSTEEAQENIGLEVAGKLV 302
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-45
Identities = 104/285 (36%), Positives = 138/285 (48%), Gaps = 17/285 (5%)
Query: 77 WHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCL 136
W T L E L + LR +V V + A E GI V + E VA+ TL
Sbjct: 57 WGTPPLDAELLARAPRLRAVVHAAGSVRGLVTDAVWERGILVTSAADANAEPVAEFTLAA 116
Query: 137 ILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKA 196
IL RR A R G+ + P + G + G T+GIVG GRIG AV +
Sbjct: 117 ILLALRRIPRFAAAYRAGRDWGWPTR-----RGGRGLYGRTVGIVGFGRIGRAVVELLRP 171
Query: 197 FGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQM 256
FG V+ YDPYLP +LG+ V +L +LL +SD VSLH L +I+ + M
Sbjct: 172 FGLRVLVYDPYLPAAEAAALGVELV-SLDELLARSDVVSLHAPLTPETRGMIDARLLALM 230
Query: 257 RPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPH 316
R GA +NTARG LVD+ +L A L+ GR+R AALDV + EP L+ PN+L TPH
Sbjct: 231 RDGATFINTARGALVDEAALLAELRSGRLR-AALDVTDPEPL-PPDSPLRTLPNVLLTPH 288
Query: 317 AAFYSEASCTELR---EMAASEIRRAIVGRIPDCLRNCVNKEYFP 358
A ++ E R + A E+ R + G + V E
Sbjct: 289 IA---GSTGDERRRLGDYALDELERFLAGEPL---LHEVTPERLA 327
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330 |
| >gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH) | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 5e-44
Identities = 80/224 (35%), Positives = 124/224 (55%), Gaps = 20/224 (8%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
+T E + K K L++ + G G D++D++AA + GI V V G V VA+ + +IL L
Sbjct: 74 MTAERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILV 133
Query: 142 RRTYWLANMVREGKKFTGPEQLREAA---SGCAR----IRGDTLGIVGLGRIGSAVALRA 194
R N V G EQ E + + + G T+G VG GRIG V R
Sbjct: 134 R------NYV------PGHEQAIEGGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRL 181
Query: 195 KAFGFNVIFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253
K F ++++YD + LP+ +EK LGLTR L+D++ + D V+++C L+ L N+ +
Sbjct: 182 KPFDVHLLYYDRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELL 241
Query: 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297
+M+ GA+LVNTARG + D +++A AL+ G + A DV +P
Sbjct: 242 SKMKKGAYLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQP 285
|
NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348 |
| >gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 8e-44
Identities = 86/261 (32%), Positives = 125/261 (47%), Gaps = 31/261 (11%)
Query: 81 ILTKEDLEKFKTLRI---IVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLI 137
KE+LE +K I R G ++ID++AA ELG + VP Y +A+ L
Sbjct: 55 FADKENLEIYKEYGIKYVFTRT-VGFNHIDLEAAKELGFKMARVPSYSPNAIAELAFTLA 113
Query: 138 LNLYRRTYWLANMVREGKKFTGPEQL--REAASGCARIRGDTLGIVGLGRIGSAVALRAK 195
+ L R T + A+ K F + +E IR T+GI+G GRIG A K
Sbjct: 114 MTLSRHTAYTASRTAN-KNFKVDPFMFSKE-------IRNSTVGIIGTGRIGLTAAKLFK 165
Query: 196 AFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCT-LNEHNHHLINEFTIK 254
G VI YD Y D + + T V +L +LL +SD +SLH + N LIN+ I
Sbjct: 166 GLGAKVIGYDIYPSDAAKDVV--TFV-SLDELLKKSDIISLHVPYIKGKNDKLINKEFIS 222
Query: 255 QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESE-------------PYNVF 301
+M+ GA L+NTARG L D++++ AL+ G++ DV +E V
Sbjct: 223 KMKDGAILINTARGELQDEEAILEALESGKLAGFGTDVLNNEKEIFFKDFDGDKIEDPVV 282
Query: 302 QGNLKDAPNILCTPHAAFYSE 322
+ L P +L TPH Y++
Sbjct: 283 EKLLDLYPRVLLTPHIGSYTD 303
|
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330 |
| >gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 5e-43
Identities = 95/291 (32%), Positives = 134/291 (46%), Gaps = 29/291 (9%)
Query: 59 STSEIHEKVLN-EAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIA 117
S E+ + + + + A M I + L+ L+II G DN DV+A GI
Sbjct: 34 SREELLRRCKDADGLMAFMPDRI--DADFLDACPRLKIIACALKGYDNFDVEACTARGIW 91
Query: 118 VCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDT 177
V VP E A+ T+ L++ L R VR GK F G + G T
Sbjct: 92 VTIVPDLLTEPTAELTIGLLIGLGRHILAGDRFVRSGK-FGGWRPKFYGTG----LDGKT 146
Query: 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSL 236
+GI+G+G +G A+A R FG +++YDP+ L E++L L RV L +LL SD + L
Sbjct: 147 VGILGMGALGRAIARRLSGFGATLLYYDPHPLDQAEEQALNLRRV-ELDELLESSDFLVL 205
Query: 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESE 296
L HLIN + +M+PGA LVN RG +VD+ ++A ALK G + A DV E E
Sbjct: 206 ALPLTPDTLHLINAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEME 265
Query: 297 -------PYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340
P ++ Q L + TPH A E+R I
Sbjct: 266 DWARPDRPRSIPQELLDQHDRTVFTPHIG------------SAVDEVRLEI 304
|
Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318 |
| >gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 7e-43
Identities = 89/252 (35%), Positives = 127/252 (50%), Gaps = 41/252 (16%)
Query: 82 LTKEDLEKFKTLRIIVRIGS---GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLIL 138
LT+E L + L V IG G + +D+ AA + GI V N P VA+ + I+
Sbjct: 65 LTEEVLAAAEKL---VAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEII 121
Query: 139 NLYRRTYWLANMVREGKKFTGPEQLREA--------ASGCARIRGDTLGIVGLGRIGSAV 190
L R PE+ +A A+G +RG TLGIVG G IG+ +
Sbjct: 122 LLLRGI---------------PEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQL 166
Query: 191 ALRAKAFGFNVIFYDPYLPDGIEKSLGL---TRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247
++ A++ G V FYD IE L L +V +L++LL QSD VSLH ++
Sbjct: 167 SVLAESLGMRVYFYD------IEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNM 220
Query: 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPY---NVFQGN 304
I + M+PGA L+N +RG +VD D+LA ALK G + AA+DV EP + F+
Sbjct: 221 IGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESP 280
Query: 305 LKDAPNILCTPH 316
L+ N++ TPH
Sbjct: 281 LRGLDNVILTPH 292
|
Length = 409 |
| >gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-41
Identities = 80/245 (32%), Positives = 117/245 (47%), Gaps = 23/245 (9%)
Query: 84 KEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRR 143
KE +EK L+ I R G+G++NID++ A E GI + N P + V + L ++L L+ +
Sbjct: 54 KEFIEKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNK 113
Query: 144 TYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF 203
VR G RE G + G T+GI+G G +G A A R FG VI
Sbjct: 114 LNRADQEVRNGI------WDREGNRG-VELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIA 166
Query: 204 YDPYLPDGIEKSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAF 261
YD K+ G +L+ L ++D +SLH L ++N+ I + +
Sbjct: 167 YD------KYKNFGDAYAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFY 220
Query: 262 LVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP---YNVFQGN-----LKDAPNILC 313
+NTARG +V L ALK G+I A LDV E E ++F L +P ++
Sbjct: 221 FINTARGKVVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVIL 280
Query: 314 TPHAA 318
TPH A
Sbjct: 281 TPHIA 285
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 4e-39
Identities = 75/212 (35%), Positives = 112/212 (52%), Gaps = 6/212 (2%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLY 141
LT E + K L++ + G G D++D++AA E GI V V G VA+ + +IL L
Sbjct: 104 LTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALV 163
Query: 142 RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201
R EG + + S + G T+GIVG GRIG AV R K F +
Sbjct: 164 RNYEPSHRQAVEGG-----WNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKL 218
Query: 202 IFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260
+ D + LP+ +E+ LGLT + L+ D V++HC L+ HL + + +M+ G+
Sbjct: 219 HYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGS 278
Query: 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292
+LVNTARG +VD D++ AL+ G + A DV
Sbjct: 279 YLVNTARGKIVDRDAVVRALESGHLAGYAGDV 310
|
Length = 385 |
| >gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 5e-39
Identities = 90/299 (30%), Positives = 138/299 (46%), Gaps = 39/299 (13%)
Query: 49 VATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDV 108
V V D S S+ L+EA+ L L + +I R +G D D+
Sbjct: 40 VEEVEGFDGLSLSQQIP--LSEAIYKL-----------LNELGIKQIAQR-SAGFDTYDL 85
Query: 109 KAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAAS 168
+ A + + + NVP Y E +A+ T+ +NL R + VRE R
Sbjct: 86 ELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVRE-------HDFRWEPP 138
Query: 169 GCARIRGD-TLGIVGLGRIGSAVA-LRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQD 226
+R D + ++G GRIG AVA + AK +G +V+ YDP+ + T+++
Sbjct: 139 ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYV--DYKDTIEE 196
Query: 227 LLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286
+ +D V+LH ++NH+L N K + GA VN ARG LVD +L AL G I+
Sbjct: 197 AVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256
Query: 287 AAALDVHESE----PYNVFQGN---------LKDAPNILCTPHAAFYSEASCTELREMA 332
AALD +E E P + +G L + +++ TPH AFY++A+ L A
Sbjct: 257 GAALDTYEFERPLFPSD-QRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDA 314
|
Length = 332 |
| >gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 9e-39
Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 36/225 (16%)
Query: 101 SGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGP 160
G D+ID E GI N PG VA+ L +L L +R
Sbjct: 66 IGTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQR---------------QG 110
Query: 161 EQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTR 220
L+ T+GIVG+G +GS +A R +A G NV+ DP + E G
Sbjct: 111 FSLKGK----------TVGIVGVGNVGSRLARRLEALGMNVLLCDPPRAE-AEGDPGFV- 158
Query: 221 VYTLQDLLFQSDCVSLHCTLNEH----NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSL 276
+L++LL ++D ++LH L +HL++E + ++PG L+N +RG ++D+ +L
Sbjct: 159 --SLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAVIDNQAL 216
Query: 277 AAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYS 321
A L++G+ LDV E+EP + L + TPH A YS
Sbjct: 217 LALLQRGKDLRVVLDVWENEP-EIDLELLDKV--DIATPHIAGYS 258
|
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343 |
| >gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 4e-38
Identities = 90/275 (32%), Positives = 132/275 (48%), Gaps = 21/275 (7%)
Query: 82 LTKED-LEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNL 140
LTKE+ L K L++I +GVD++ ++ E G+ V N G VA+ L LIL L
Sbjct: 49 LTKEEALAALKRLKLIQVPSAGVDHLPLERLPE-GVVVANNHGNS-PAVAEHALALILAL 106
Query: 141 YRRTYWLANMVREG--KKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFG 198
+R N +R G G E + +RG T+GI+G G IG +A KAFG
Sbjct: 107 AKRIVEYDNDLRRGIWHGRAGEEPESKE------LRGKTVGILGYGHIGREIARLLKAFG 160
Query: 199 FNVIFYD--PYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQM 256
VI P +G + L+ L + L Q+D V + L + LI + M
Sbjct: 161 MRVIGVSRSPKEDEGADFVGTLSD---LDEALEQADVVVVALPLTKQTRGLIGAAELAAM 217
Query: 257 RPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV---HESEPYNVFQGNLK--DAPNI 311
+PGA LVN RG +VD+++L ALK+ I AA+DV + S V + PN+
Sbjct: 218 KPGAILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNV 277
Query: 312 LCTPHAAFYSEASCTELREMAASEIRRAIVGRIPD 346
+ +PH A ++E + + AA IRR + G
Sbjct: 278 IMSPHNAGWTEETFRRRIDEAAENIRRYLRGEPLL 312
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 1e-37
Identities = 85/268 (31%), Positives = 117/268 (43%), Gaps = 43/268 (16%)
Query: 70 EAVGALMWHTIILT----KEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPG-Y 124
E L ++L E L LR I +GVD + E + + N G +
Sbjct: 33 ELTEELADADVLLGNPPLPELLPAAPRLRWIQSTSAGVDALLFPELLERDVVLTNARGIF 92
Query: 125 GVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLG 184
G +A+ L +L R+ A E +++ +RE + G T+ IVGLG
Sbjct: 93 G-PPIAEYVLGYMLAFARKLPRYARNQAE-RRWQRRGPVRE-------LAGKTVLIVGLG 143
Query: 185 RIGSAVALRAKAFGFNVIFYDPYLPDGI-----EKSLGLTRVYT---LQDLLFQSDCVSL 236
IG +A RAKAFG VI G+ + VYT L +LL ++D V
Sbjct: 144 DIGREIARRAKAFGMRVI--------GVRRSGRPAPPVVDEVYTPDELDELLPEADYVVN 195
Query: 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESE 296
L L N M+PGA L+N RG +VD+D+L AL+ GRI AALDV E E
Sbjct: 196 ALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESGRIAGAALDVFEEE 255
Query: 297 PYNVFQGNLK------DAPNILCTPHAA 318
P L D PN++ TPH +
Sbjct: 256 P-------LPADSPLWDLPNVIITPHIS 276
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
| >gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-37
Identities = 107/301 (35%), Positives = 139/301 (46%), Gaps = 23/301 (7%)
Query: 60 TSEIHEKVLNEAVGAL-MWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAV 118
T E H EA G L + LEK LR I G DN DV A I +
Sbjct: 35 TVEQHAAAFAEAEGLLGSGEKV--DAALLEKMPKLRAASTISVGYDNFDVDALTARKILL 92
Query: 119 CNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREG--KKFTGPEQLREAASGCARIRGD 176
+ P E VADT + L+L+ RR +A V+ G GP+ G +
Sbjct: 93 MHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWF-----GT-DVHHK 146
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNV-IFYDPYLP-DGIEKSLGLTRVYTLQDLLFQSDCV 234
TLGIVG+GRIG A+A RA FGFN+ I Y+ E+ R L LL +SD V
Sbjct: 147 TLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFN-ARYCDLDTLLQESDFV 204
Query: 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294
+ L + HHL +M+ A +N RG +VD+++L AAL++G I AA LDV E
Sbjct: 205 CIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFE 264
Query: 295 SEPYNVFQGNLKDAPNILCTPHAAFYSEASCT-ELR-EMAASEIRRAIVGRIPDCLRNCV 352
EP +V L PN++ PH S T E R MAA + I +NCV
Sbjct: 265 QEPLSV-DSPLLSLPNVVAVPHI-----GSATHETRYNMAACAVDNLIDALQGKVEKNCV 318
Query: 353 N 353
N
Sbjct: 319 N 319
|
Length = 323 |
| >gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 3e-34
Identities = 85/261 (32%), Positives = 122/261 (46%), Gaps = 41/261 (15%)
Query: 77 WHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCL 136
++ DL K K L+ I +GVD + ++ + GI + N G +A+ +
Sbjct: 46 YNPDFDEL-DLAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGY 104
Query: 137 ILNLYRRT-YWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAK 195
IL +Y+ N ++ KK+ L E + G T+ +G G IG +A R K
Sbjct: 105 ILEIYKGLKKAYKN--QKEKKWKMDSSLLE-------LYGKTILFLGTGSIGQEIAKRLK 155
Query: 196 AFGFNVIFYDPYLPDGIEKS----LGLTRVYTLQDL---LFQSDCV--SLHCTLNEHNHH 246
AFG VI G+ S + Y L++L L ++D V L T E HH
Sbjct: 156 AFGMKVI--------GVNTSGRDVEYFDKCYPLEELDEVLKEADIVVNVLPLT--EETHH 205
Query: 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLK 306
L +E +QM+ GA +N RG VD+D+L ALK +IR AALDV E EP K
Sbjct: 206 LFDEAFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLP------K 259
Query: 307 DAP-----NILCTPHAAFYSE 322
D+P N+L TPH + SE
Sbjct: 260 DSPLWDLDNVLITPHISGVSE 280
|
Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 82/264 (31%), Positives = 127/264 (48%), Gaps = 36/264 (13%)
Query: 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKK----- 156
G +N+DV+AA + GIAV N PG E A+ L L RR +R G
Sbjct: 96 GYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLP 155
Query: 157 --FTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVA-LRAKAFGFNVIFYDPYLPDGIE 213
F G L ++G T+G++G GRIGSA A + + F N+I+YD Y +E
Sbjct: 156 HLFVG--NL---------LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLE 204
Query: 214 KSLGL---------------TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258
K + R +++++L ++D +SLH L++ +HLIN+ + M+
Sbjct: 205 KFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKK 264
Query: 259 GAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAA 318
A LVN +RG ++D+ +L LK + LDV E EPY + L D N + PH A
Sbjct: 265 EAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY--MKPGLADMKNAVVVPHIA 322
Query: 319 FYSEASCTELREMAASEIRRAIVG 342
S+ + + +AA + + G
Sbjct: 323 SASKWTREGMATLAALNVLGKLKG 346
|
Length = 386 |
| >gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 75/282 (26%), Positives = 130/282 (46%), Gaps = 29/282 (10%)
Query: 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGV---EEVADTTLCLIL 138
L + + + +++I++ G G++ +DV AA + GI V +P G A+ + L+L
Sbjct: 72 LDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLML 131
Query: 139 NLYRRTYWLANMVREGKKFTGP--EQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKA 196
L R+ + ++ ++ P + L G T+ I+G G IG +A R +
Sbjct: 132 GLLRKQNEMQISLK-ARRLGEPIGDTLF----------GKTVFILGYGAIGIELAKRLRP 180
Query: 197 FGFNVIFYDPYLPDGIEKSLGLT------------RVYTLQDLLFQSDCVSLHCTLNEHN 244
FG ++ E L + + + ++D V L CTL +
Sbjct: 181 FGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKET 240
Query: 245 HHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGN 304
++N+ + M+ GA LVN ARGGL+D D++ AAL+ G + A+DV SEP++
Sbjct: 241 AGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPI 300
Query: 305 LKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPD 346
LK PN++ TPH A +E S + ++ + GR
Sbjct: 301 LK-HPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLT 341
|
Length = 347 |
| >gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 6e-29
Identities = 78/257 (30%), Positives = 125/257 (48%), Gaps = 24/257 (9%)
Query: 87 LEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYW 146
LE + +I R +G D D+ A + I + NVP Y E +A+ ++ + L L RR
Sbjct: 65 LESYGIKQIAQRT-AGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPD 123
Query: 147 LANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDP 206
+ V+ FT ++ ++ T+ I+G GRIG+A A FG + YD
Sbjct: 124 IERRVQA-HDFTWQAEIMSKP-----VKNMTVAIIGTGRIGAATAKIYAGFGATITAYDA 177
Query: 207 YLPDGIEKSLG-LTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265
Y P+ K L LT ++++ + +D +SLH N+ ++HL ++ ++ GA LVN
Sbjct: 178 Y-PN---KDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNA 233
Query: 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESE-PYNVFQGNLKDA-----------PNILC 313
ARG +++ L AA+ G + AA+D +E+E Y KD IL
Sbjct: 234 ARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILV 293
Query: 314 TPHAAFYSEASCTELRE 330
TPH AF+S+ + L E
Sbjct: 294 TPHIAFFSDEAVQNLVE 310
|
Length = 330 |
| >gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 59/180 (32%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQ 230
+ G TLGIVG G IG A+A RA A G V+ G+ L +L +
Sbjct: 131 GSLAGSTLGIVGFGAIGQALARRALALGMRVLALRR--SGRPSDVPGVEAAADLAELFAR 188
Query: 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAAL 290
SD + L L HLIN + Q +PG L+N ARGGLVD ++L AL GRI A+L
Sbjct: 189 SDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASL 248
Query: 291 DVHESEP-------YNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGR 343
DV + EP Y P + +PH + + L + + R G+
Sbjct: 249 DVTDPEPLPEGHPLYT--------HPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQ 300
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308 |
| >gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-25
Identities = 75/246 (30%), Positives = 112/246 (45%), Gaps = 17/246 (6%)
Query: 77 WHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCL 136
+H +T E ++K K L +++ G G D+ID+ AA G+ V V G V VA+ L
Sbjct: 106 FHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMR 165
Query: 137 ILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKA 196
IL L R + V G+ + A + G T+G VG GRIG + R K
Sbjct: 166 ILILLRNFLPGYHQVVSGE-----WNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKP 220
Query: 197 FGFNVIFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255
F N++++D + +EK G L +L + D V ++ L E + N+ I +
Sbjct: 221 FNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAK 280
Query: 256 MRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKD-----APN 310
M+ G +VN ARG ++D ++A A G I DV +P KD PN
Sbjct: 281 MKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAP------KDHPWRYMPN 334
Query: 311 ILCTPH 316
TPH
Sbjct: 335 HAMTPH 340
|
Length = 386 |
| >gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-23
Identities = 70/225 (31%), Positives = 103/225 (45%), Gaps = 38/225 (16%)
Query: 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPE 161
G D++D+ E GI + PG V D L +L L R EG
Sbjct: 68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------EG------- 111
Query: 162 QLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV 221
+ T G+VG G +G + + G+ V+ DP P +++ G
Sbjct: 112 ---------VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDP--PR--QEAEGDGDF 158
Query: 222 YTLQDLLFQSDCVSLHCTLN-EHNH---HLINEFTIKQMRPGAFLVNTARGGLVDDDSLA 277
+L+ +L + D +SLH L E H HL++E + +RPGA+L+N +RG +VD+ +L
Sbjct: 159 VSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALR 218
Query: 278 AALKQGRIRAAALDVHESEPYNVFQGNLKDAPN-ILCTPHAAFYS 321
AL G A LDV E EP Q +L+ A + TPH A YS
Sbjct: 219 EALLSGEDLDAVLDVWEGEP----QIDLELADLCTIATPHIAGYS 259
|
Length = 381 |
| >gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 3e-22
Identities = 68/276 (24%), Positives = 103/276 (37%), Gaps = 57/276 (20%)
Query: 85 EDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNV--PGYGVEEVADTTLCLILNLYR 142
L + L+ I +G+GVD++ + + + PG + +A+ L +L L+R
Sbjct: 51 GLLARLPNLKAIFSLGAGVDHLL-ADPDLPDVPIVRLVDPGLA-QGMAEYVLAAVLRLHR 108
Query: 143 RTY----------WLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVAL 192
W R + +G++GLG +G+AVA
Sbjct: 109 DMDRYAAQQRRGVWKPLPQRPAAERR-------------------VGVLGLGELGAAVAR 149
Query: 193 RAKAFGFNVIFYD--PYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL--NEHNHHLI 248
R A GF V + P +G+ G L L Q+D L C L ++
Sbjct: 150 RLAALGFPVSGWSRSPKDIEGVTCFHGEEG---LDAFLAQTD--ILVCLLPLTPETRGIL 204
Query: 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDA 308
N + ++ GA L+N RG + + L AAL G + A LDV E EP L
Sbjct: 205 NAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEP-------LPAD 257
Query: 309 ------PNILCTPHAAFYSEASCTELREMAASEIRR 338
P + TPH A + A IRR
Sbjct: 258 HPLWRHPRVTVTPHIA--AITDPDSAAAQVAENIRR 291
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 4e-21
Identities = 76/279 (27%), Positives = 109/279 (39%), Gaps = 51/279 (18%)
Query: 85 EDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEE--VADTTLCLILNLYR 142
E L LR++ + +G D + + E G+ +CN GV + A+ + LIL R
Sbjct: 53 EALRALPRLRVVQTLSAGYDGV-LPLLPE-GVTLCN--ARGVHDASTAELAVALILASLR 108
Query: 143 R--TYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFN 200
+ A + P + + IVG G IG A+ R F
Sbjct: 109 GLPRFVRAQARGRWEPRRTPS-----------LADRRVLIVGYGSIGRAIERRLAPFEVR 157
Query: 201 VIFYDPYLPDGIEKSLGLTRVYT-------------LQDLLFQSDCVSLHCTLNEHNHHL 247
V TRV L LL ++D V L L + L
Sbjct: 158 V-----------------TRVARTARPGEQVHGIDELPALLPEADVVVLIVPLTDETRGL 200
Query: 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKD 307
++ + +M GA LVN ARG +VD D+L A L GR+R AALDV + EP L
Sbjct: 201 VDAEFLARMPDGALLVNVARGPVVDTDALVAELASGRLR-AALDVTDPEPLPPGHP-LWS 258
Query: 308 APNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPD 346
AP +L TPH + A + ++RR G +
Sbjct: 259 APGVLITPHVGGATPAFLPRAYALVRRQLRRYAAGEPLE 297
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300 |
| >gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 7e-21
Identities = 70/207 (33%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 115 GIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIR 174
G N G E VA+ L L+L R+ L R E +R
Sbjct: 73 GRRWTNAAGAYAETVAEHALALLLAGLRQ---LPARAR-----ATTWDPAEEDDLVTLLR 124
Query: 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYD--PYLPDGIEKSLGLTRVYTLQDLLFQSD 232
G T+ IVG G IG A+ FG VI + +G ++++ R L ++ +D
Sbjct: 125 GSTVAIVGAGGIGRALIPLLAPFGAKVIAVNRSGRPVEGADETVPADR---LDEVWPDAD 181
Query: 233 CVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292
V L L HL++ + M+P A+LVN ARG LVD D+L AL+ G I AALDV
Sbjct: 182 HVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDV 241
Query: 293 HESEPYNVFQGN-LKDAPNILCTPHAA 318
+ EP + G+ L PN L TPH A
Sbjct: 242 TDPEP--LPDGHPLWSLPNALITPHVA 266
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303 |
| >gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 5e-18
Identities = 72/278 (25%), Positives = 119/278 (42%), Gaps = 25/278 (8%)
Query: 80 IILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILN 139
IL K K ++I + +GVD+IDV E + N Y + VA+ L+L
Sbjct: 37 AILIKGRYVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNAGAYSIS-VAEHAFALLLA 95
Query: 140 LYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGF 199
+ ++ G P +L + +LGI+G G IG VAL AKAFG
Sbjct: 96 WAKNICENNYNMKNGNFKQSPTKL---------LYNKSLGILGYGGIGRRVALLAKAFGM 146
Query: 200 NVIFYDPYLPDGIEKSLGLTRVY-TLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258
N+ Y + G++ +Y +D++ +SD V + L + +IN + R
Sbjct: 147 NIYAYTRSYVND-----GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRK 201
Query: 259 GAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAA 318
G ++N AR +VD + + L+ + DV +EP + + N N++ +PH A
Sbjct: 202 GLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEP-IITETNPD---NVILSPHVA 257
Query: 319 FYSEASCTELR-EMAASEIRRAIVGRIPDCLRNCVNKE 355
+ +A I+ G+ P +N V KE
Sbjct: 258 GGMSGEIMQPAVALAFENIKNFFEGK-P---KNIVRKE 291
|
Length = 303 |
| >gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 7e-17
Identities = 77/237 (32%), Positives = 110/237 (46%), Gaps = 24/237 (10%)
Query: 93 LRIIVRIGSGVDNIDVKAAG-ELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMV 151
LR + + +G D V AAG +AV + G VA+ TL LIL RR +
Sbjct: 60 LRWVQALAAGPD--AVLAAGFAPEVAVTSGRGLHDGTVAEHTLALILAAVRRLDEMREAQ 117
Query: 152 REGK---KFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208
RE + + G + LR A + G + I G G IG +A A G V
Sbjct: 118 REHRWAGELGGLQPLRPA-GRLTTLLGARVLIWGFGSIGQRLAPLLTALGARVT------ 170
Query: 209 PDGIEKSLGLTR----VYT---LQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAF 261
G+ +S G R V L +LL ++D + + H ++ + + A+
Sbjct: 171 --GVARSAG-ERAGFPVVAEDELPELLPETDVLVMILPATPSTAHALDAEVLAALPKHAW 227
Query: 262 LVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAA 318
+VN RG VD+D+L AAL+ GR+ AALDV +EP L DAPN++ TPHAA
Sbjct: 228 VVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLPA-SSPLWDAPNLILTPHAA 283
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 62/173 (35%), Positives = 74/173 (42%), Gaps = 38/173 (21%)
Query: 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFY-------------DPYL------PDGI-- 212
G +GI+G G IG A A+A G V Y D Y+ PDG
Sbjct: 132 VGKRVGILGYGSIGRQTARLAQALGMEVYAYTRSPRPTPESRKDDGYIVPGTGDPDGSIP 191
Query: 213 ------EKSLGLTRVYTLQ-DLLFQSDCVSLHCTLNEHNHHLIN--EFTIKQMRPGAFLV 263
L DLL VSL L HL+ EF I R F+
Sbjct: 192 SAWFSGTDKASLHEFLRQDLDLLV----VSL--PLTPATKHLLGAEEFEILAKR-KTFVS 244
Query: 264 NTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPH 316
N ARG LVD D+L AAL+ G+IR AALDV + EP L APN++ TPH
Sbjct: 245 NIARGSLVDTDALVAALESGQIRGAALDVTDPEPLPA-DHPLWSAPNVIITPH 296
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334 |
| >gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 6e-15
Identities = 68/253 (26%), Positives = 109/253 (43%), Gaps = 38/253 (15%)
Query: 74 ALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTT 133
ALM ++ E L K ++ + +G D++D + GI PG V +
Sbjct: 40 ALMVRSVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYV 99
Query: 134 LCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALR 193
+L M+ E F+ + T+GIVG+G +G + R
Sbjct: 100 FSSLL-----------MLAERDGFS--------------LHDRTVGIVGVGNVGRRLQAR 134
Query: 194 AKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNH----HLIN 249
+A G + DP P G R +L +L+ ++D ++ H L + HL +
Sbjct: 135 LEALGIKTLLCDP--PRADRGDEGDFR--SLDELVQEADILTFHTPLFKDGPYKTLHLAD 190
Query: 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP-YNVFQGNLKDA 308
E I+ ++PGA L+N RG +VD+ +L L +G+ + LDV E EP NV D
Sbjct: 191 EKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD- 249
Query: 309 PNILCTPHAAFYS 321
+ TPH A Y+
Sbjct: 250 ---IGTPHIAGYT 259
|
Length = 378 |
| >gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 6e-15
Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 57/282 (20%)
Query: 58 QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVD----NIDVKAAGE 113
+S EI E++ + + + T I +E LE ++ I S N+D+ AA E
Sbjct: 35 ESDEEIIERIGDADCVLVSYTTQI-DEEVLEACPNIKYIGMCCSLYSEESANVDIAAARE 93
Query: 114 LGIAVCNVPGYGVEEVADTTLC-LI--LNLYRRTYWLANMVREGKKFTGPEQLREAASGC 170
GI V + YG E V + + LI L+ + W RE
Sbjct: 94 NGITVTGIRDYGDEGVVEYVISELIRLLHGFGGKQWK-EEPRE----------------- 135
Query: 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYD-PYLPDGIEKSLGLTRVYTLQDLLF 229
+ G +GI+GLG G +A FG +V +Y PD K + R L +LL
Sbjct: 136 --LTGLKVGIIGLGTTGQMIADALSFFGADVYYYSRTRKPDAEAKGI---RYLPLNELLK 190
Query: 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAA 289
D + L + N L+ E + + G L NT+ G + ++L LK
Sbjct: 191 TVDVICTC--LPK-NVILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLK-------- 239
Query: 290 LDVHESEPYNVFQGN---------LKDAPNILCTPHAAFYSE 322
+ YN+F + L PN++CT +A ++
Sbjct: 240 -----ASGYNIFDCDTAGALGDEELLRYPNVICTNKSAGWTR 276
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294 |
| >gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 48/217 (22%), Positives = 80/217 (36%), Gaps = 17/217 (7%)
Query: 86 DLEKFKTLRIIVRIGSGVDNIDVK-AAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRT 144
L + R++ G D+ D+ A G+ V G L N
Sbjct: 81 ALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIAVEGV-------ELPLLTSNSIGAG 133
Query: 145 YWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY 204
V+ +F Q G + G T+ +VG G +G A + G V+
Sbjct: 134 ELS---VQFIARFL-EVQQPGRLGGAPDVAGKTVVVVGAGVVGKEAAQMLRGLGAQVLIT 189
Query: 205 DPYLPDGIE--KSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH-LINEFTIKQMRPGAF 261
D + +E + LG V L++ L ++D + L L+ E ++QM+PG+
Sbjct: 190 DI-NVEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELVEQMKPGSV 248
Query: 262 LVNTARGGLVDDD-SLAAALKQGRIRAAALDVHESEP 297
+VN A G + L++G DV+ P
Sbjct: 249 IVNVAVGAVGCVQALHTQLLEEGHGVVHYGDVNMPGP 285
|
The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310 |
| >gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 6e-08
Identities = 72/265 (27%), Positives = 114/265 (43%), Gaps = 49/265 (18%)
Query: 74 ALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTT 133
AL+WH + ++ + L+ + +G+GVD+I K + +VP + +E DT
Sbjct: 42 ALVWHPPV----EMLAGRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLE---DTG 94
Query: 134 LCL---------ILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLG 184
+ +L+ +RR + PE RE T+GI+G G
Sbjct: 95 MGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDF---------TIGILGAG 145
Query: 185 RIGSAVALRAKAFGFNVIFYD------PYL-----PDGIEKSLGLTRVYTLQDLLFQSDC 233
+GS VA + +GF + + P + + + L TRV L +LL +
Sbjct: 146 VLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRV--LINLLPNTPE 203
Query: 234 VSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293
T+ N L+ Q+ GA+L+N ARG V +D L AAL G+++ A LDV
Sbjct: 204 -----TVGIINQQLLE-----QLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVF 253
Query: 294 ESEPYNVFQGNLKDAPNILCTPHAA 318
EP + L P + TPH A
Sbjct: 254 SREPLPP-ESPLWQHPRVAITPHVA 277
|
Length = 312 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 39/160 (24%), Positives = 48/160 (30%), Gaps = 19/160 (11%)
Query: 358 PSAGGGGLPAGLNYPHAPP--GGPVSS----GPPGGPPGPGVVPEGINGGSS--SLVSRY 409
G P G P PP GP + P GPP P + S SL S +
Sbjct: 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW 2802
Query: 410 YAAAAAAAI----GTLPPVQQAHSTTPHDSAIAPAPGSERGGGAPPSGSGGGGAPPSG-- 463
A AA+ LPP P ++ P G PPS GG P G
Sbjct: 2803 DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDV 2862
Query: 464 -----GGPPPNTPAGLPHNLPLSTADPSNHHPPKPESSEP 498
P PA A P+ + + P
Sbjct: 2863 RRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPP 2902
|
Length = 3151 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 19/136 (13%), Positives = 29/136 (21%), Gaps = 14/136 (10%)
Query: 365 LPAGLNYP-HAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAAAAIGTLPP 423
L L A + P P +++ + A A A P
Sbjct: 381 LERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPA----PA 436
Query: 424 VQQAHSTTPHDSAIAPAPGSERGGGAPPSGSGGGGAPPSGGGPPPNTPAGLPHNLPLSTA 483
A + ++ AP + A P P P A
Sbjct: 437 PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP---------PAA 487
Query: 484 DPSNHHPPKPESSEPG 499
P P +
Sbjct: 488 PAPAAAPAAPAAPAAP 503
|
Length = 824 |
| >gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 32/123 (26%), Positives = 41/123 (33%), Gaps = 10/123 (8%)
Query: 381 SSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAAAAIGTLPPVQQAH----STTPHDSA 436
P P P+ GG + T P + A T H +A
Sbjct: 634 GFPPVFKTALPR--PDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAA 691
Query: 437 IAPAPGSERGGGAPPSGSGGGGAPPSGGGPPPNTPAGLPHNLPLSTADPSNHHPPKPESS 496
+ AP + R GG P GGGG PP P PA +L S P PP E +
Sbjct: 692 L-RAPQAPRPGGPP---GGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQA 747
Query: 497 EPG 499
+
Sbjct: 748 DGA 750
|
Length = 753 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 28/156 (17%), Positives = 38/156 (24%), Gaps = 15/156 (9%)
Query: 358 PSAGGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAAAA 417
+A + P G G ++ + A A AA
Sbjct: 631 GAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAP 690
Query: 418 IGTLPPVQQAHSTTPHDSAIAPAPGSERGGGAPPSGSGGGGAPPSGGG---PPPNTP--- 471
P P +A PA ++ PP + G AP P P P
Sbjct: 691 AA--PAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDP 748
Query: 472 -------AGLPHNLPLSTADPSNHHPPKPESSEPGV 500
A P + A PP SE
Sbjct: 749 PDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEE 784
|
Length = 824 |
| >gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 34/125 (27%), Positives = 44/125 (35%), Gaps = 14/125 (11%)
Query: 358 PSAGGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAAAA 417
PS GG P+G GG + PG P+G + S A A +
Sbjct: 373 PSGGGASAPSGSAAEGPASGGAATIPTPG-----TQGPQGTAPAAGMTPSSAAPATPAPS 427
Query: 418 IGTLPPVQQAHS-TTPHDSAIAPAPGSERGG-----GAPPSGSGGGGAPPSGGGP---PP 468
P V + P S I P P GAP S + APP+ G P
Sbjct: 428 AAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487
Query: 469 NTPAG 473
+TP+G
Sbjct: 488 HTPSG 492
|
Length = 624 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 32/146 (21%), Positives = 42/146 (28%), Gaps = 16/146 (10%)
Query: 358 PSAGGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAAAA 417
P+ GGG PGG V + G P PG G S+ AA AA
Sbjct: 360 PAVTGGG----------APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAA 409
Query: 418 IGTLPPVQQAHSTTPHDSAIAPAPG-----SERGGGAPPSGSGGGGAPPSGGGPPPNTPA 472
+ A +T APAP + A S A
Sbjct: 410 LAP-KAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDA 468
Query: 473 GLPHNLPLSTADPSNHHPPKPESSEP 498
P + ++A S+ P P
Sbjct: 469 QPPADSGSASAPASDAPPDAAFEPAP 494
|
Length = 830 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 24/143 (16%), Positives = 35/143 (24%), Gaps = 4/143 (2%)
Query: 360 AGGGGLPAGLNYPHAPPGGPVSSGPP--GGPPGPGVVPEGINGGSSSLVSRYYAAAAAAA 417
GG P P +S + G ++
Sbjct: 16 EGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGP 75
Query: 418 IGTLPPVQQAHSTTPHDSAIAPAPGSERGGGAPPSGSGGGGAPP--SGGGPPPNTPAGLP 475
P + + T S +APA + G PP S PP PPP+ L
Sbjct: 76 GTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLS 135
Query: 476 HNLPLSTADPSNHHPPKPESSEP 498
L + P +
Sbjct: 136 EMLRPVGSPGPPPAASPPAAGAS 158
|
Length = 1352 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 40/159 (25%), Positives = 56/159 (35%), Gaps = 26/159 (16%)
Query: 358 PSAGGGGLPAGLNYPHAP--------PGGPVSSGPPGGPPGPG--VVPEGINGGSSSLVS 407
P+A PA P P PGGP P GP P G ++
Sbjct: 2725 PAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT 2784
Query: 408 RYYAAAAAAAIGTLPPVQQAHSTTPHDSAIAPAPGSERGGGAPPSGSGGGGAPP---SGG 464
R A+ + + +LP +P D A PA PP+ S G PP +
Sbjct: 2785 RPAVASLSESRESLP--------SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836
Query: 465 GPPPNTPAGLPHNLPLSTA-----DPSNHHPPKPESSEP 498
PP P P +LPL + D P + +++P
Sbjct: 2837 TAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKP 2875
|
Length = 3151 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 24/145 (16%), Positives = 38/145 (26%), Gaps = 6/145 (4%)
Query: 343 RIPDCLRNCVNKEYFPSAGGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGS 402
RI L+ ++ P + P + G
Sbjct: 137 RIHKALKE--GEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGV 194
Query: 403 SSLVSRYYAAAAAAAIGTLPPVQQAHST--TPHDSAIAPAPGSERGGGAPPSGSGGGGAP 460
S S ++ + +LPP + + P P G APP P
Sbjct: 195 PSFPSPPEDPSSPSD-SSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPP 253
Query: 461 PSGGGP-PPNTPAGLPHNLPLSTAD 484
S P PP+ A ++ D
Sbjct: 254 LSTAKPTPPSASATPAPIGGITLDD 278
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 25/152 (16%), Positives = 35/152 (23%), Gaps = 11/152 (7%)
Query: 348 LRNCVNKEYFPSAGGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVS 407
L + ++ A G P P P P
Sbjct: 574 LAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAP------ 627
Query: 408 RYYAAAAAAAIGTLPPVQQAHSTTPHDSAIAPAPGSERGGGAPPSGSGGGGAPPSGGGPP 467
A A AAA A + + G + GGA P+ P
Sbjct: 628 ---APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPA 684
Query: 468 PNTPAGLPHNLPLSTADPSNHHPPKPESSEPG 499
P PA + A P+ P +
Sbjct: 685 P-APAAPAAPAGAAPAQPA-PAPAATPPAGQA 714
|
Length = 824 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 29/115 (25%), Positives = 34/115 (29%), Gaps = 9/115 (7%)
Query: 375 PPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAAAAIGTLPPVQQAHSTTPHD 434
PP P PP PPG P G + + A AA A
Sbjct: 697 PPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARP 756
Query: 435 SAIAPAPGSERGGGAPPSGSGGGGAP---PSGGGPPPNTPAGLPHNLPLSTADPS 486
A AP PP+ + G P P P P G P P A P+
Sbjct: 757 PAAAPGRAR------PPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPT 805
|
Length = 991 |
| >gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 13/109 (11%)
Query: 359 SAGGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAAAAI 418
G A G SS G G G++ + + A A A
Sbjct: 304 GGAAAAARGG-----AAAAGGASSAYSAGAAGGS--------GAAGVAAGLGGVARAGAS 350
Query: 419 GTLPPVQQAHSTTPHDSAIAPAPGSERGGGAPPSGSGGGGAPPSGGGPP 467
P+++A S + G+ GG + A + GPP
Sbjct: 351 AAASPLRRAASRAAESMKSSFRAGARSTGGGAGGAAAAAAAGAAAAGPP 399
|
Length = 440 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 31/143 (21%), Positives = 42/143 (29%), Gaps = 13/143 (9%)
Query: 358 PSAGGGGLPAGLNYPHAPPGGPVSSGPPGGPPGPGVVPEGINGGSSSLVSRYYAAAAAAA 417
P GGG P PV+ P P ++ AAA AAA
Sbjct: 365 PGQSGGGAG-----PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAP------AAAPAAA 413
Query: 418 IGTLPPVQQAHSTTPHDSAIAPA--PGSERGGGAPPSGSGGGGAPPSGGGPPPNTPAGLP 475
+P A+A A + GGAP AP + P P +
Sbjct: 414 AAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVA 473
Query: 476 HNLPLSTADPSNHHPPKPESSEP 498
+ A + P P +P
Sbjct: 474 AAAAAAPARAAPAAAPAPADDDP 496
|
Length = 700 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 501 | |||
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 100.0 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 100.0 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 100.0 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 100.0 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 100.0 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 100.0 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 100.0 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 100.0 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 100.0 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 100.0 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| PLN02928 | 347 | oxidoreductase family protein | 100.0 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 100.0 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 100.0 | |
| KOG0068|consensus | 406 | 100.0 | ||
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 100.0 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 100.0 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 100.0 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 100.0 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 100.0 | |
| KOG0069|consensus | 336 | 100.0 | ||
| KOG0067|consensus | 435 | 100.0 | ||
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 100.0 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 99.84 | |
| PF00389 | 133 | 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr | 99.81 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 99.79 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 99.6 | |
| PLN02494 | 477 | adenosylhomocysteinase | 99.6 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 99.51 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.48 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.46 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.38 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 99.33 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.29 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.28 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.27 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.26 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 99.26 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.22 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.15 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.14 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.12 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.12 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.06 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.03 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 99.03 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.02 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.01 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.0 | |
| KOG0409|consensus | 327 | 98.99 | ||
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.97 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 98.92 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.91 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.84 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 98.83 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.83 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.81 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 98.78 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 98.76 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 98.75 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.75 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.74 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.74 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.73 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.69 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.67 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.67 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 98.66 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.66 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 98.66 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.63 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 98.63 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.63 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 98.61 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.61 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.59 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.59 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 98.59 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.58 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 98.57 | |
| KOG1370|consensus | 434 | 98.56 | ||
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 98.55 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.54 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.53 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.52 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.51 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.51 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 98.5 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.49 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.49 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 98.48 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.47 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.47 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.45 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.45 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 98.42 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.41 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.38 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 98.37 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.37 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 98.36 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 98.35 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.31 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.31 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.3 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.28 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 98.28 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.25 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 98.24 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 98.18 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.17 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 98.14 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.14 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 98.14 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 98.12 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.12 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.11 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 98.11 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 98.11 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 98.08 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.03 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 98.0 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 98.0 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.97 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.94 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 97.94 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.93 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.92 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.92 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.9 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.88 | |
| KOG2380|consensus | 480 | 97.87 | ||
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.86 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.85 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.85 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.84 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.8 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.8 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.78 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.77 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.75 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.74 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.72 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 97.72 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.72 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.72 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.69 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.67 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.64 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.61 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 97.58 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.58 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 97.57 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 97.56 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 97.55 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.54 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.52 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 97.51 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.5 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.49 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.48 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.47 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.47 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.47 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 97.46 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.45 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 97.43 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.41 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.41 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.41 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.38 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.37 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 97.37 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.36 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.35 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.35 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.33 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.32 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.31 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 97.31 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.29 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 97.29 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.29 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 97.29 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.28 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.28 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.28 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.27 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 97.27 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.27 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.26 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.25 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.25 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.24 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 97.24 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 97.23 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.2 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.19 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.18 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 97.18 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.15 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.14 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.14 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 97.12 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.12 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 97.11 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.09 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 97.09 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.09 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.09 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 97.07 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.05 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.04 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.01 | |
| KOG2653|consensus | 487 | 96.97 | ||
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 96.96 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.95 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.95 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.94 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.93 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.93 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.9 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.9 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.9 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.82 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.81 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 96.8 | |
| KOG0023|consensus | 360 | 96.8 | ||
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.8 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.76 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.74 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.73 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.68 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.67 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 96.67 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.66 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.62 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.61 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.61 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.61 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.59 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.54 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.54 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.5 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 96.49 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 96.48 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 96.45 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 96.4 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.39 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.37 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.37 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.34 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.34 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.34 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 96.3 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.3 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.28 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.22 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.21 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 96.19 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.16 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.12 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.11 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 96.11 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.07 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 96.03 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.0 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.97 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.96 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.96 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 95.93 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 95.9 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.88 | |
| KOG2304|consensus | 298 | 95.88 | ||
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 95.86 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.86 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.85 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 95.84 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 95.81 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.78 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.75 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 95.74 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 95.72 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.72 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.72 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.72 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.7 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 95.69 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.68 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.67 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.66 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 95.66 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 95.66 | |
| KOG2711|consensus | 372 | 95.65 | ||
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 95.64 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.64 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 95.63 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 95.63 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.62 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 95.62 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.59 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 95.58 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.56 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 95.55 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.53 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 95.48 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 95.47 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 95.43 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.4 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 95.38 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 95.38 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 95.36 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 95.36 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 95.31 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 95.3 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.28 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.27 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.24 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.22 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.17 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 95.16 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 95.16 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 95.15 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 95.13 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.11 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 95.11 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.11 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 95.1 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.09 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 95.08 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 95.06 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 95.01 | |
| PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 95.0 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.95 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.93 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 94.93 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 94.91 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 94.89 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.89 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 94.87 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 94.86 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.82 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.8 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.7 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 94.7 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 94.69 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 94.68 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.67 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 94.66 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 94.65 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.64 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 94.61 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 94.61 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.56 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 94.55 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 94.51 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.5 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 94.48 | |
| PRK08223 | 287 | hypothetical protein; Validated | 94.47 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.45 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 94.45 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 94.38 | |
| PF05222 | 136 | AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal | 94.35 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.31 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 94.24 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 94.23 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 94.13 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 94.12 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 94.1 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.1 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 94.08 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 94.01 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 93.97 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 93.97 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 93.96 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 93.95 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 93.92 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.87 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 93.87 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 93.87 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 93.76 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 93.74 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 93.72 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.69 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 93.66 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.64 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 93.62 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.61 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 93.6 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 93.56 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 93.55 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 93.54 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 93.53 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 93.46 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 93.45 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 93.44 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 93.44 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 93.43 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 93.4 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 93.37 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 93.36 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.36 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.27 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 93.26 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 93.16 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 93.11 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.03 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.02 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 93.0 | |
| PLN00106 | 323 | malate dehydrogenase | 92.96 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 92.95 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.93 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 92.86 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 92.82 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 92.81 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 92.75 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 92.7 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 92.69 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 92.69 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 92.67 | |
| PLN02602 | 350 | lactate dehydrogenase | 92.66 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 92.63 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 92.6 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 92.46 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 92.38 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 92.34 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 92.33 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 92.33 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 92.27 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 92.27 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 92.25 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 92.23 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 92.17 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 92.11 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 92.08 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 92.04 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 92.04 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 92.03 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 92.01 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 92.0 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 91.97 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 91.92 | |
| PRK13376 | 525 | pyrB bifunctional aspartate carbamoyltransferase c | 91.87 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 91.86 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 91.79 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 91.77 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 91.72 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 91.67 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 91.67 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 91.62 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 91.62 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 91.61 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 91.54 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 91.53 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 91.53 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 91.53 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 91.52 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 91.5 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 91.38 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 91.36 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 91.32 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 91.3 | |
| KOG0022|consensus | 375 | 91.24 | ||
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 91.24 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.2 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 91.17 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 91.16 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 91.16 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 91.13 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 91.12 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 91.1 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 90.97 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 90.96 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 90.95 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 90.93 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 90.83 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 90.79 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 90.78 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 90.74 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 90.69 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 90.68 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 90.68 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 90.67 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 90.62 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 90.62 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 90.6 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 90.58 | |
| cd08264 | 325 | Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam | 90.57 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 90.56 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 90.55 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 90.53 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 90.51 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 90.41 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.31 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 90.27 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 90.26 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.21 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 90.19 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 90.18 |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-68 Score=549.48 Aligned_cols=284 Identities=39% Similarity=0.546 Sum_probs=257.0
Q ss_pred hHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHH
Q psy7383 60 TSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILN 139 (501)
Q Consensus 60 ~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~ 139 (501)
.+++. +.+.+++++++ ...++++++++++++||||++.++|+||||+++++++||.|+|+|+.|+.+||||++++||+
T Consensus 36 ~~~l~-~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~ 113 (324)
T COG0111 36 EEELL-EALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLA 113 (324)
T ss_pred hHHHH-hhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHH
Confidence 33444 34466776666 66789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce
Q psy7383 140 LYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT 219 (501)
Q Consensus 140 l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~ 219 (501)
++|++..+++.+++|.|.+.. ....+|+||||||||+|+||+.+|++|++|||+|++||++.........++.
T Consensus 114 ~~R~~~~~~~~~~~g~W~~~~-------~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~ 186 (324)
T COG0111 114 LARRIPDADASQRRGEWDRKA-------FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVV 186 (324)
T ss_pred HhcCchhhHHHHHcCCccccc-------cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccce
Confidence 999999999999999997511 1234799999999999999999999999999999999998766555556677
Q ss_pred ecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCC
Q psy7383 220 RVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYN 299 (501)
Q Consensus 220 ~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~ 299 (501)
...+|+++|++||||++|+|+|++|++|||++.|++||+|++|||++||.+||++||+++|++|+|+||+||||++||++
T Consensus 187 ~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~ 266 (324)
T COG0111 187 GVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLP 266 (324)
T ss_pred ecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCC
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q psy7383 300 VFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVN 353 (501)
Q Consensus 300 ~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn 353 (501)
. +||||++|||++|||+|+.|.|+.+++..++++||.+|++|+.+.+..+.|+
T Consensus 267 ~-~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~~~~v~ 319 (324)
T COG0111 267 A-DSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVNNAPEVD 319 (324)
T ss_pred C-CChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 7 7999999999999999999999999999999999999999996543233343
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=541.23 Aligned_cols=316 Identities=30% Similarity=0.422 Sum_probs=269.6
Q ss_pred CCEEEEecCCCCCcccccccccceEEEcCC---CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccc
Q psy7383 28 RPLVALLDGRDCSIEMPILKDVATVAFCDA---QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVD 104 (501)
Q Consensus 28 kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~---~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D 104 (501)
+++|++.+.... ...+.|++..++.+.+. .+.+++.+ .+.++++++.+ ...+++++++++|+||||++.|+|+|
T Consensus 2 ~~~vl~~~~~~~-~~~~~l~~~~~v~~~~~~~~~~~~~~~~-~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~G~d 78 (323)
T PRK15409 2 KPSVILYKALPD-DLLQRLEEHFTVTQVANLSPETVEQHAA-AFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISVGYD 78 (323)
T ss_pred CceEEEeCCCCH-HHHHHHHhcCcEEEcCCCCCCCHHHHHH-HhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECceecc
Confidence 456777775431 22345555445544432 23345544 44677776654 45799999999999999999999999
Q ss_pred ccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccc
Q psy7383 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLG 184 (501)
Q Consensus 105 ~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG 184 (501)
+||+++|+++||.|+|++|+++++||||++++||+++|++..+++.+++|.|...... .....+|+||||||||+|
T Consensus 79 ~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~----~~~g~~L~gktvGIiG~G 154 (323)
T PRK15409 79 NFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGP----DWFGTDVHHKTLGIVGMG 154 (323)
T ss_pred cccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCcc----ccccCCCCCCEEEEEccc
Confidence 9999999999999999999999999999999999999999999999999998532100 011357999999999999
Q ss_pred hHHHHHHHHHH-hCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEE
Q psy7383 185 RIGSAVALRAK-AFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV 263 (501)
Q Consensus 185 ~IG~~iA~~L~-afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilI 263 (501)
+||+.+|++|+ +|||+|++||++.........+++.. +++|++++||+|++|||+|++|++|||++.|++||+|++||
T Consensus 155 ~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~-~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI 233 (323)
T PRK15409 155 RIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYC-DLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI 233 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEec-CHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE
Confidence 99999999998 99999999998865444445566654 89999999999999999999999999999999999999999
Q ss_pred EcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy7383 264 NTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 264 NvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~ 343 (501)
|++||++||++||+++|++|+|+||+||||++||++. ++|||++|||++|||+|++|.+++.++.+++++||.+|++|+
T Consensus 234 N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~ 312 (323)
T PRK15409 234 NAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSV-DSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGK 312 (323)
T ss_pred ECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCC-CchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999986 899999999999999999999999999999999999999998
Q ss_pred CCCCCccccccc
Q psy7383 344 IPDCLRNCVNKE 355 (501)
Q Consensus 344 ~p~~l~N~Vn~e 355 (501)
.| .|+||++
T Consensus 313 ~~---~~~vn~~ 321 (323)
T PRK15409 313 VE---KNCVNPQ 321 (323)
T ss_pred CC---CcccCcc
Confidence 54 4778865
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-67 Score=535.25 Aligned_cols=304 Identities=40% Similarity=0.566 Sum_probs=264.9
Q ss_pred cccccccceEEEcCCC-ChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeec
Q psy7383 43 MPILKDVATVAFCDAQ-STSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNV 121 (501)
Q Consensus 43 ~~~L~~~~~v~~~~~~-~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~ 121 (501)
.+.|.+..++.+++.. ..+....+..++++++++.....+++++++++|+||+|++.++||||||+++|+++||.|+|+
T Consensus 16 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnv 95 (324)
T COG1052 16 LERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNV 95 (324)
T ss_pred HHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeC
Confidence 3444444555555443 111122334567888777767889999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEE
Q psy7383 122 PGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNV 201 (501)
Q Consensus 122 pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~V 201 (501)
|++++++||||+++|||++.|++.+.++.+|+|+|.+... .......+++|||+||||+|+||+++|+++++|||+|
T Consensus 96 p~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~---~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v 172 (324)
T COG1052 96 PGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGG---PDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKV 172 (324)
T ss_pred CCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCC---cccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999999999999965320 0112235799999999999999999999999999999
Q ss_pred EEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 202 IFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 202 i~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
++|||+..++.++..+..++ +++|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||+
T Consensus 173 ~y~~~~~~~~~~~~~~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 173 LYYDRSPNPEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred EEECCCCChHHHhhcCceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999876555556667776 49999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEecCCCCCCCCCCCCCCCCCC---eEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccc
Q psy7383 282 QGRIRAAALDVHESEPYNVFQGNLKDAPN---ILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNK 354 (501)
Q Consensus 282 ~g~I~GAaLDVfe~EPl~~~~~pL~~~pN---VilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~ 354 (501)
+|+|+||+||||+.||... +++|++++| |++|||+||+|.+++.+|.+.+++|+++|++|+.+. |+|++
T Consensus 252 ~g~i~gaglDV~e~Ep~~~-d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~---~~v~~ 323 (324)
T COG1052 252 SGKIAGAGLDVFENEPALF-DHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPP---NEVNP 323 (324)
T ss_pred hCCcceEEeeecCCCCCCC-ChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCC---CCCCC
Confidence 9999999999999999875 799998887 999999999999999999999999999999999765 45554
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-66 Score=529.08 Aligned_cols=304 Identities=31% Similarity=0.512 Sum_probs=260.3
Q ss_pred EEEecCCCC-CcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchh
Q psy7383 31 VALLDGRDC-SIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109 (501)
Q Consensus 31 IvvLd~~~~-~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~ 109 (501)
|++++...+ ...++.|++..++.+....+++++.+. +.++++++++ ...+++++++++|+||||++.++|+|+||++
T Consensus 3 i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~ 80 (311)
T PRK08410 3 IVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIER-IKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVDIE 80 (311)
T ss_pred EEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHH-hCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccccccHH
Confidence 666665432 234456666555555444445666544 4667766655 4679999999999999999999999999999
Q ss_pred hhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHH
Q psy7383 110 AAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSA 189 (501)
Q Consensus 110 aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~ 189 (501)
+|+++||.|+|++|+++.+||||++++||+++|++..+++.++++.|...... .......++|+||||||||+|+||+.
T Consensus 81 ~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~-~~~~~~~~~L~gktvGIiG~G~IG~~ 159 (311)
T PRK08410 81 YAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIF-THISRPLGEIKGKKWGIIGLGTIGKR 159 (311)
T ss_pred HHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCc-cccCccccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999998532110 00011235899999999999999999
Q ss_pred HHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 190 VALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 190 iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
+|+++++|||+|++|||+.... ..++.. .+|+|++++||+|++|||+|++|++|||++.|++||+|++|||+|||+
T Consensus 160 vA~~~~~fgm~V~~~d~~~~~~---~~~~~~-~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~ 235 (311)
T PRK08410 160 VAKIAQAFGAKVVYYSTSGKNK---NEEYER-VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG 235 (311)
T ss_pred HHHHHhhcCCEEEEECCCcccc---ccCcee-ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc
Confidence 9999999999999999974321 224443 489999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCC---CCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy7383 270 LVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDA---PNILCTPHAAFYSEASCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 270 vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~---pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~ 343 (501)
+||++||+++|++|+|+ |+||||++||++. ++|||.+ ||||+|||+|++|.++..++.+++++||.+|++|+
T Consensus 236 vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~-~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~ 310 (311)
T PRK08410 236 IVNEKDLAKALDEKDIY-AGLDVLEKEPMEK-NHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG 310 (311)
T ss_pred ccCHHHHHHHHHcCCeE-EEEecCCCCCCCC-CChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999 9999999999987 8999987 89999999999999999999999999999999986
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=524.10 Aligned_cols=303 Identities=34% Similarity=0.499 Sum_probs=258.1
Q ss_pred EEEecCCCC---Ccccccccc-cceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccccc
Q psy7383 31 VALLDGRDC---SIEMPILKD-VATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNI 106 (501)
Q Consensus 31 IvvLd~~~~---~~e~~~L~~-~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~I 106 (501)
|++++.... ....+.|++ +.++.+....+.+++.+ .+.++++++.+ ...+++++++++|+||||++.++|+|+|
T Consensus 3 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 80 (317)
T PRK06487 3 AVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAE-RLRGAQVAISN-KVALDAAALAAAPQLKLILVAATGTNNV 80 (317)
T ss_pred EEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHH-HhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCcccccc
Confidence 667765432 123344543 33455544444566654 45677766555 4579999999999999999999999999
Q ss_pred chhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchH
Q psy7383 107 DVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRI 186 (501)
Q Consensus 107 D~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~I 186 (501)
|+++|.++||.|+|++|+++++||||++++||+++|++..+++.+++|.|....... ......++|+||||||||+|+|
T Consensus 81 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~-~~~~~~~~l~gktvgIiG~G~I 159 (317)
T PRK06487 81 DLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFC-LLDFPIVELEGKTLGLLGHGEL 159 (317)
T ss_pred CHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccc-cccCcccccCCCEEEEECCCHH
Confidence 999999999999999999999999999999999999999999999999985321100 0011235799999999999999
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
|+.+|++|++|||+|++||++.... .... .+|+|++++||+|++|||+|++|++|||++.|++||+|++|||+|
T Consensus 160 G~~vA~~l~~fgm~V~~~~~~~~~~-----~~~~-~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a 233 (317)
T PRK06487 160 GGAVARLAEAFGMRVLIGQLPGRPA-----RPDR-LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA 233 (317)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCcc-----cccc-cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence 9999999999999999999864321 1222 389999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCC--CCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy7383 267 RGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKD--APNILCTPHAAFYSEASCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 267 RG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~--~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~ 343 (501)
||++||++||+++|++|+|+||+||||++||++. ++|||. +|||++|||+|++|.++.+++.+++++||++|++|+
T Consensus 234 RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~-~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~ 311 (317)
T PRK06487 234 RGGLVDEQALADALRSGHLGGAATDVLSVEPPVN-GNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGK 311 (317)
T ss_pred CccccCHHHHHHHHHcCCeeEEEeecCCCCCCCC-CCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999986 799995 899999999999999999999999999999999997
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=526.63 Aligned_cols=321 Identities=33% Similarity=0.442 Sum_probs=269.8
Q ss_pred CCEEEEecCCCCCcccccccccceEEEcCC---CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccc
Q psy7383 28 RPLVALLDGRDCSIEMPILKDVATVAFCDA---QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVD 104 (501)
Q Consensus 28 kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~---~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D 104 (501)
+++|++.+... ....+.|++..++.++.. .+.+++. +.+.++++++++....+++++++++|+||||+++++|+|
T Consensus 2 ~~kil~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d 79 (333)
T PRK13243 2 KPKVFITREIP-ENGIEMLEEHFEVEVWEDEREIPREVLL-EKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYD 79 (333)
T ss_pred CceEEEECCCC-HHHHHHHhcCceEEEecCCCCCCHHHHH-HHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCcccc
Confidence 35677665432 122234544344444321 2345554 445678877766555799999999999999999999999
Q ss_pred ccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccc
Q psy7383 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLG 184 (501)
Q Consensus 105 ~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG 184 (501)
+||+++|+++||.|+|++|+++.+||||++++||+++|++..+++.+++|.|......+........+|+||||||||+|
T Consensus 80 ~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G 159 (333)
T PRK13243 80 NIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFG 159 (333)
T ss_pred ccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcC
Confidence 99999999999999999999999999999999999999999999999999986321000000112357999999999999
Q ss_pred hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEE
Q psy7383 185 RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264 (501)
Q Consensus 185 ~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilIN 264 (501)
+||+.+|++|++|||+|++||++.........++.. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||
T Consensus 160 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN 238 (333)
T PRK13243 160 RIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEY-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVN 238 (333)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEE
Confidence 999999999999999999999986544334455554 4899999999999999999999999999999999999999999
Q ss_pred cCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy7383 265 TARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRI 344 (501)
Q Consensus 265 vaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~ 344 (501)
++||++||+++|+++|++|+|+||+||||++||++ ++|||++|||++|||+||+|.++..++.+++++||.+|++|+.
T Consensus 239 ~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~--~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~ 316 (333)
T PRK13243 239 TARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY--NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEV 316 (333)
T ss_pred CcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC--CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999986 7999999999999999999999999999999999999999985
Q ss_pred CCCCcccccccc
Q psy7383 345 PDCLRNCVNKEY 356 (501)
Q Consensus 345 p~~l~N~Vn~e~ 356 (501)
+ .|+||++.
T Consensus 317 ~---~~~v~~~~ 325 (333)
T PRK13243 317 P---PTLVNREV 325 (333)
T ss_pred C---CcccCHHH
Confidence 4 57888765
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-64 Score=515.83 Aligned_cols=281 Identities=33% Similarity=0.460 Sum_probs=245.7
Q ss_pred EcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHH
Q psy7383 54 FCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTT 133 (501)
Q Consensus 54 ~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~a 133 (501)
+++..+.+++.+. +.++|+++.+ ...+++++++++|+||||++.++|+|+||+++|.++||.|+|++|+++.+||||+
T Consensus 29 ~~~~~~~~~~~~~-~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~ 106 (314)
T PRK06932 29 EYDHTSAEQTIER-AKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHV 106 (314)
T ss_pred EecCCChHHHHHH-hCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHH
Confidence 3333445666544 4667765544 4579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh
Q psy7383 134 LCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE 213 (501)
Q Consensus 134 lal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~ 213 (501)
+++||+++|++..+++.++++.|..... ........++|+||||||||+|.||+.+|++|++|||+|++||+......
T Consensus 107 i~l~l~~~R~~~~~~~~~~~~~W~~~~~-~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~- 184 (314)
T PRK06932 107 LGMIFALKHSLMGWYRDQLSDRWATCKQ-FCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVC- 184 (314)
T ss_pred HHHHHHHHhChHHHHHHHHcCCCCcCcc-ccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccccc-
Confidence 9999999999999999999999853211 00001123579999999999999999999999999999999997642111
Q ss_pred hhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 214 KSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 214 ~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
... ..+|+|++++||+|++|||+|++|++|||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||
T Consensus 185 ---~~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 185 ---REG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred ---ccc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 111 3489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC----CCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy7383 294 ESEPYNVFQGNLK----DAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 294 e~EPl~~~~~pL~----~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~ 343 (501)
++||++. ++||| ++|||++|||+||+|.++.+++.+++++||++|++|+
T Consensus 261 ~~EP~~~-~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g 313 (314)
T PRK06932 261 VKEPPEK-DNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQG 313 (314)
T ss_pred CCCCCCC-CChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999987 89999 4899999999999999999999999999999999886
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=521.89 Aligned_cols=319 Identities=28% Similarity=0.355 Sum_probs=265.8
Q ss_pred CCCCEEEEecCCCCCccccccccc-ceEEEcCC----CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCC--CcEEEE
Q psy7383 26 QTRPLVALLDGRDCSIEMPILKDV-ATVAFCDA----QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKT--LRIIVR 98 (501)
Q Consensus 26 ~~kp~IvvLd~~~~~~e~~~L~~~-~~v~~~~~----~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~--LK~I~~ 98 (501)
..|++|++..........+.|++. .++.++.. .+.+++.+.+.+++|+++++....+++++++++++ ||+|++
T Consensus 13 ~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~ 92 (386)
T PLN02306 13 NGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSN 92 (386)
T ss_pred CCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEEE
Confidence 446778887654311124556543 35554332 34566665544567777666556799999999996 699999
Q ss_pred cCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeE
Q psy7383 99 IGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTL 178 (501)
Q Consensus 99 ~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktV 178 (501)
.++|+|+||+++|+++||.|+|++|+++.+||||++++||+++|++..+++.+++|.|.... .......+|.||||
T Consensus 93 ~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~----~~~~~g~~L~gktv 168 (386)
T PLN02306 93 MAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWL----PHLFVGNLLKGQTV 168 (386)
T ss_pred CCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccc----ccccCCcCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999884210 00111257999999
Q ss_pred EeeccchHHHHHHHHHH-hCCCEEEEECCCCCchhh---hhcC------------ceecCCHHHHHhcCCEEEEeccCch
Q psy7383 179 GIVGLGRIGSAVALRAK-AFGFNVIFYDPYLPDGIE---KSLG------------LTRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 179 GIVGlG~IG~~iA~~L~-afG~~Vi~~dr~~~~~~~---~~~g------------v~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
||||+|+||+.+|++|+ +|||+|++||++...... ...+ ++...+|+|++++||+|++|||+|+
T Consensus 169 GIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~ 248 (386)
T PLN02306 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDK 248 (386)
T ss_pred EEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCCh
Confidence 99999999999999985 999999999988643211 1111 1223589999999999999999999
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcH
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSE 322 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ 322 (501)
+|++|||++.|++||+|++|||++||++||++||+++|++|+|.||+||||++||++ +++||++|||++|||+|++|.
T Consensus 249 ~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~--~~~L~~~pNVilTPHiag~T~ 326 (386)
T PLN02306 249 TTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM--KPGLADMKNAVVVPHIASASK 326 (386)
T ss_pred hhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC--cchHhhCCCEEECCccccCcH
Confidence 999999999999999999999999999999999999999999999999999999985 579999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q psy7383 323 ASCTELREMAASEIRRAIVGRIPDCLRNCVN 353 (501)
Q Consensus 323 ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn 353 (501)
++.+++.+++++||.+|++|+.+. |.||
T Consensus 327 e~~~~~~~~~~~ni~~~~~g~~~~---~~~~ 354 (386)
T PLN02306 327 WTREGMATLAALNVLGKLKGYPVW---GDPN 354 (386)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCc---cccc
Confidence 999999999999999999998654 5666
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=521.87 Aligned_cols=314 Identities=28% Similarity=0.374 Sum_probs=270.4
Q ss_pred ccccc-ceEEEcC-CC-ChHHHHHHhhccceEEEEec--cCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEe
Q psy7383 45 ILKDV-ATVAFCD-AQ-STSEIHEKVLNEAVGALMWH--TIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVC 119 (501)
Q Consensus 45 ~L~~~-~~v~~~~-~~-~~~ei~~~~l~~a~~vli~~--~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vt 119 (501)
.|++. .++.+.. .. +.+++. +.+.++++++++. ...+++++|+++|+||||+++++|+|+||+++|+++||.|+
T Consensus 63 ~l~~~g~e~~~~~~~~~~~~~~~-~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~ 141 (385)
T PRK07574 63 FLEERGHELVVTSDKDGPDSDFE-KELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVA 141 (385)
T ss_pred HHHhcCcEEEEeCCCCCCHHHHH-HHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEE
Confidence 45544 3555432 22 234444 4456777766542 24699999999999999999999999999999999999999
Q ss_pred ecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCC
Q psy7383 120 NVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGF 199 (501)
Q Consensus 120 n~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~ 199 (501)
|++++++.+||||++++||+++|++..+++.++++.|..... ....++|+||||||||+|+||+.+|++|++|||
T Consensus 142 n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~-----~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~ 216 (385)
T PRK07574 142 EVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADC-----VSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDV 216 (385)
T ss_pred cCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-----cccceecCCCEEEEECCCHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999864210 012357999999999999999999999999999
Q ss_pred EEEEECCCC-CchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q psy7383 200 NVIFYDPYL-PDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278 (501)
Q Consensus 200 ~Vi~~dr~~-~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~ 278 (501)
+|++|||+. ........++....+++|++++||+|++|||+|++|++|||++.|++||+|++|||++||++||++||++
T Consensus 217 ~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~ 296 (385)
T PRK07574 217 KLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVR 296 (385)
T ss_pred EEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHH
Confidence 999999986 3333445566656689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccccccc
Q psy7383 279 ALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFP 358 (501)
Q Consensus 279 aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e~~~ 358 (501)
+|++|+|+||+||||++||++. +||||++|||++|||+|++|.++++++.+.+++||++|++|+.+.+.-.+|+.-.+.
T Consensus 297 AL~sG~i~GAaLDV~~~EPlp~-d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~~~~~~~~~~ 375 (385)
T PRK07574 297 ALESGHLAGYAGDVWFPQPAPA-DHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEYLIVDGGRLA 375 (385)
T ss_pred HHHhCCccEEEEecCCCCCCCC-CChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCceEecCCccc
Confidence 9999999999999999999987 899999999999999999999999999999999999999999776655667766666
Q ss_pred CCCCCCC
Q psy7383 359 SAGGGGL 365 (501)
Q Consensus 359 ~~~~~~~ 365 (501)
..|+-+|
T Consensus 376 ~~~~~~~ 382 (385)
T PRK07574 376 GTGAHSY 382 (385)
T ss_pred Ccccccc
Confidence 6555443
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-63 Score=516.73 Aligned_cols=287 Identities=28% Similarity=0.340 Sum_probs=255.7
Q ss_pred HHHHHHhhccceEEEEec--cCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHH
Q psy7383 61 SEIHEKVLNEAVGALMWH--TIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLIL 138 (501)
Q Consensus 61 ~ei~~~~l~~a~~vli~~--~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L 138 (501)
+++. +.+.+++++++.. ...++++.|+++|+||||++.++|+||||+++|+++||.|+|++|+|+.+||||++++||
T Consensus 89 ~~~~-~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL 167 (386)
T PLN03139 89 CELE-KHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRIL 167 (386)
T ss_pred HHHH-HHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHH
Confidence 3444 4557787766543 246999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC-chhhhhcC
Q psy7383 139 NLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP-DGIEKSLG 217 (501)
Q Consensus 139 ~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~-~~~~~~~g 217 (501)
++.|++..+++.+++|.|..... ....++|.||||||||+|+||+.+|++|++|||+|++||++.. .+.....+
T Consensus 168 ~l~R~~~~~~~~~~~g~W~~~~~-----~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g 242 (386)
T PLN03139 168 ILLRNFLPGYHQVVSGEWNVAGI-----AYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETG 242 (386)
T ss_pred HHHcCcHHHHHHHHhCCCccccc-----cCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcC
Confidence 99999999999999999863210 1123579999999999999999999999999999999998753 23344566
Q ss_pred ceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCC
Q psy7383 218 LTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297 (501)
Q Consensus 218 v~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EP 297 (501)
+..+.+++|++++||+|++|||+|++|++|||++.|++||+|++|||++||++||++||+++|++|+|+||+||||++||
T Consensus 243 ~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 243 AKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred ceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 76667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q psy7383 298 YNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355 (501)
Q Consensus 298 l~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e 355 (501)
++. +||||.+|||++|||+||.|.++..++.+.+++||.+|++|+.. ..+|+|...
T Consensus 323 lp~-d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~-~~~~~i~~~ 378 (386)
T PLN03139 323 APK-DHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDF-PAQNYIVKE 378 (386)
T ss_pred CCC-CChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCC-CCcceeecC
Confidence 987 89999999999999999999999999999999999999999854 346666544
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=524.32 Aligned_cols=311 Identities=29% Similarity=0.363 Sum_probs=264.2
Q ss_pred CEEEEecCCCCCccccccccc-c-eEEEcCC-CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccc
Q psy7383 29 PLVALLDGRDCSIEMPILKDV-A-TVAFCDA-QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDN 105 (501)
Q Consensus 29 p~IvvLd~~~~~~e~~~L~~~-~-~v~~~~~-~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ 105 (501)
.+|++++... ......|++. . ++.+... .+.+++.+ .+.+++++++.....+++++++++|+||||++.|+|+|+
T Consensus 11 ~~ili~~~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 88 (409)
T PRK11790 11 IKFLLLEGVH-QSAVEVLRAAGYTNIEYHKGALDEEELIE-AIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGTNQ 88 (409)
T ss_pred eEEEEECCCC-HHHHHHHHhcCCceEEECCCCCCHHHHHH-HcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECceeccc
Confidence 3577765432 2223445443 2 5554432 34455544 446777765555567999999999999999999999999
Q ss_pred cchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccch
Q psy7383 106 IDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGR 185 (501)
Q Consensus 106 ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~ 185 (501)
||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.... ....+|+||||||||+|+
T Consensus 89 id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~-------~~~~~L~gktvGIiG~G~ 161 (409)
T PRK11790 89 VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA-------AGSFEVRGKTLGIVGYGH 161 (409)
T ss_pred ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc-------cCcccCCCCEEEEECCCH
Confidence 9999999999999999999999999999999999999999999999999986321 123579999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 186 IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 186 IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
||+.+|+++++|||+|++||++.... ..++..+.+++|++++||+|++|||+|++|++|||++.|++||+|++|||+
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~---~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~ 238 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLP---LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINA 238 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccc---cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence 99999999999999999999864321 123455568999999999999999999999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCC---CCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhC
Q psy7383 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVF---QGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVG 342 (501)
Q Consensus 266 aRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~---~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G 342 (501)
|||++||++||+++|++|+|+||+||||++||++.. ++|||.+|||++|||+||+|.++.+++.+++++|+.+|++|
T Consensus 239 aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~ 318 (409)
T PRK11790 239 SRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDN 318 (409)
T ss_pred CCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999998752 37999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccc
Q psy7383 343 RIPDCLRNCVNK 354 (501)
Q Consensus 343 ~~p~~l~N~Vn~ 354 (501)
+.+ .|.||.
T Consensus 319 ~~~---~~~vn~ 327 (409)
T PRK11790 319 GST---LSAVNF 327 (409)
T ss_pred CCc---Ccceec
Confidence 854 466664
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-63 Score=510.98 Aligned_cols=307 Identities=24% Similarity=0.339 Sum_probs=258.4
Q ss_pred CCCEEEEecCCCCCc---ccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccc
Q psy7383 27 TRPLVALLDGRDCSI---EMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGV 103 (501)
Q Consensus 27 ~kp~IvvLd~~~~~~---e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~ 103 (501)
+|++|++........ ..+.++... +..+...+.+++. +.+.++|+++++ ...+++++++++|+||||++.++|+
T Consensus 17 ~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~-~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~ 93 (347)
T PLN02928 17 RPTRVLFCGPEFPASYSYTREYLQKYP-FIQVDAVAREDVP-DVIANYDICVPK-MMRLDADIIARASQMKLIMQFGVGL 93 (347)
T ss_pred CCCEEEEECCCchhHHHHHHHHhhcCC-eeEecCCCHHHHH-HHhcCCcEEEEC-CCCCCHHHHhcCCCceEEEECCccc
Confidence 456677765432211 123333333 3333334455654 445677765554 4579999999999999999999999
Q ss_pred cccchhhhhhcCeEEeecCCC---CchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEe
Q psy7383 104 DNIDVKAAGELGIAVCNVPGY---GVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGI 180 (501)
Q Consensus 104 D~ID~~aa~~~GI~Vtn~pg~---~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGI 180 (501)
|+||++++.++||.|+|++++ ++.+||||++++||+++|++..+++.++++.|... ...+|+||||||
T Consensus 94 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~---------~~~~l~gktvGI 164 (347)
T PLN02928 94 EGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEP---------IGDTLFGKTVFI 164 (347)
T ss_pred CcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccc---------cccCCCCCEEEE
Confidence 999999999999999999986 78999999999999999999999999999987421 124799999999
Q ss_pred eccchHHHHHHHHHHhCCCEEEEECCCCCchhhhh-------------cCceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS-------------LGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 181 VGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~-------------~gv~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
||+|.||+.+|++|++|||+|++|||+........ ... ...+|+|++++||+|++|||+|++|++|
T Consensus 165 iG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~l 243 (347)
T PLN02928 165 LGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGI 243 (347)
T ss_pred ECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcc
Confidence 99999999999999999999999999743221110 012 2458999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHH
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTE 327 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~ 327 (501)
|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++. ++|||++|||++|||+|++|.+++++
T Consensus 244 i~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~-~~pL~~~~nviiTPHia~~t~~~~~~ 322 (347)
T PLN02928 244 VNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDP-DDPILKHPNVIITPHVAGVTEYSYRS 322 (347)
T ss_pred cCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCC-CChhhcCCCEEECCcCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCC
Q psy7383 328 LREMAASEIRRAIVGRIPDC 347 (501)
Q Consensus 328 ~~~~~~~ni~~~l~G~~p~~ 347 (501)
+.+++++||++|++|+.+.+
T Consensus 323 ~~~~~~~nl~~~~~g~~~~~ 342 (347)
T PLN02928 323 MGKIVGDAALQLHAGRPLTG 342 (347)
T ss_pred HHHHHHHHHHHHHCCCCCCc
Confidence 99999999999999986544
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=531.05 Aligned_cols=301 Identities=34% Similarity=0.504 Sum_probs=265.2
Q ss_pred cccccc-ceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecC
Q psy7383 44 PILKDV-ATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVP 122 (501)
Q Consensus 44 ~~L~~~-~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~p 122 (501)
+.|++. .++.+....+.+++.+ .+.++|+++++...++++++++++|+||||+++++|+|+||+++|+++||.|+|+|
T Consensus 14 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p 92 (525)
T TIGR01327 14 DILEDVGVEVDVQTGLSREELLE-IIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAP 92 (525)
T ss_pred HHHHhcCcEEEeCCCCCHHHHHH-HhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCC
Confidence 344433 3555543345566654 44678887777666899999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEE
Q psy7383 123 GYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVI 202 (501)
Q Consensus 123 g~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi 202 (501)
|+++.+||||++++||+++|++..+++.+++|+|.... ....+|+||||||||+|+||+.+|++|++|||+|+
T Consensus 93 g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~-------~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~ 165 (525)
T TIGR01327 93 TGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKA-------FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVL 165 (525)
T ss_pred CcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccc-------cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999986321 11257999999999999999999999999999999
Q ss_pred EECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 203 FYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 203 ~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+||++.........++..+.+++|++++||+|++|||+|++|++||+++.|++||+|++|||++||++||++||+++|++
T Consensus 166 ~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 166 AYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred EECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHc
Confidence 99997544444556776666899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccccc
Q psy7383 283 GRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357 (501)
Q Consensus 283 g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e~~ 357 (501)
|+|+||+||||++||++ ++|||++|||++|||+|++|.++..++.+++++|+.+|++|+.+ .|+||...+
T Consensus 246 g~i~gAaLDVf~~EP~~--~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~---~~~vn~~~~ 315 (525)
T TIGR01327 246 GHVRAAALDVFEKEPPT--DNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPV---PNAVNAPGI 315 (525)
T ss_pred CCeeEEEEecCCCCCCC--CChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCC---CceeeCCCC
Confidence 99999999999999964 79999999999999999999999999999999999999999854 577776644
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=524.79 Aligned_cols=313 Identities=36% Similarity=0.506 Sum_probs=269.9
Q ss_pred EEEEecCCCCCccccccccc--ceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccc
Q psy7383 30 LVALLDGRDCSIEMPILKDV--ATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNID 107 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~--~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID 107 (501)
+|++.+... +..++.|++. .++.+....+.+++.+. +.++|+++++....+++++++++|+||||++.++|+|+||
T Consensus 2 ~ili~~~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 79 (526)
T PRK13581 2 KVLVSDPIS-PAGLEILKDAPGVEVDVKTGLDKEELLEI-IGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNVD 79 (526)
T ss_pred eEEEeCCCC-HHHHHHHhccCCeEEEeCCCCCHHHHHHH-hcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCccccccc
Confidence 366665432 2223445443 34444333455666544 4678877776666899999999999999999999999999
Q ss_pred hhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHH
Q psy7383 108 VKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIG 187 (501)
Q Consensus 108 ~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG 187 (501)
+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|.... ....+|.||||||||+|+||
T Consensus 80 ~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~-------~~g~~l~gktvgIiG~G~IG 152 (526)
T PRK13581 80 VPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKK-------FMGVELYGKTLGIIGLGRIG 152 (526)
T ss_pred HHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccC-------ccccccCCCEEEEECCCHHH
Confidence 99999999999999999999999999999999999999999999999985321 11257999999999999999
Q ss_pred HHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 188 SAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 188 ~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+.+|++|++|||+|++||++.........+++.+ +++|++++||+|++|||+|++|+++|+++.|++||+|++|||++|
T Consensus 153 ~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aR 231 (526)
T PRK13581 153 SEVAKRAKAFGMKVIAYDPYISPERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCAR 231 (526)
T ss_pred HHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCC
Confidence 9999999999999999999765444455677766 899999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy7383 268 GGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDC 347 (501)
Q Consensus 268 G~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~ 347 (501)
|++||++||+++|++|+|+||+||||++||++ ++|||++|||++|||+|++|.++.+++.+++++|+.+|++|+.+
T Consensus 232 G~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~--~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~-- 307 (526)
T PRK13581 232 GGIIDEAALAEALKSGKVAGAALDVFEKEPPT--DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPV-- 307 (526)
T ss_pred CceeCHHHHHHHHhcCCeeEEEEecCCCCCCC--CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCc--
Confidence 99999999999999999999999999999975 79999999999999999999999999999999999999999854
Q ss_pred Cccccccccc
Q psy7383 348 LRNCVNKEYF 357 (501)
Q Consensus 348 l~N~Vn~e~~ 357 (501)
.|+||...+
T Consensus 308 -~~~vn~~~~ 316 (526)
T PRK13581 308 -PNAVNLPSI 316 (526)
T ss_pred -CceeeCCCC
Confidence 567775543
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=491.27 Aligned_cols=306 Identities=26% Similarity=0.357 Sum_probs=260.4
Q ss_pred EEEEecCCCCCcccccc----cccc-eEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCC--CCcEEEEcCcc
Q psy7383 30 LVALLDGRDCSIEMPIL----KDVA-TVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFK--TLRIIVRIGSG 102 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L----~~~~-~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p--~LK~I~~~gaG 102 (501)
||++++.++ +|.+.+ ++.. ++.+.+...++|+. +.+.++++++++....++++++++++ +||+|++.++|
T Consensus 3 ~i~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G 79 (330)
T PRK12480 3 KIMFFGTRD--YEKEMALNWGKKNNVEVTTSKELLSSATV-DQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG 79 (330)
T ss_pred EEEEEeCcH--HHHHHHHHHHHhcCeEEEEcCCCCCHHHH-HHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccc
Confidence 588887654 344444 3332 34443333345554 44577888777766689999999997 89999999999
Q ss_pred ccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeec
Q psy7383 103 VDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVG 182 (501)
Q Consensus 103 ~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVG 182 (501)
+|+||+++|+++||.|+|++++++++||||++++||+++|++.++++.++++.|.+... ...++|+|++|||||
T Consensus 80 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~------~~~~~l~g~~VgIIG 153 (330)
T PRK12480 80 FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE------IMSKPVKNMTVAIIG 153 (330)
T ss_pred cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccc------cCccccCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999997632110 113579999999999
Q ss_pred cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEE
Q psy7383 183 LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL 262 (501)
Q Consensus 183 lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAil 262 (501)
+|.||+.+|++|++|||+|++||++...... ......++++++++||+|++|+|++++|+++|+++.|++||+|++|
T Consensus 154 ~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~---~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavl 230 (330)
T PRK12480 154 TGRIGAATAKIYAGFGATITAYDAYPNKDLD---FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAIL 230 (330)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEeCChhHhhh---hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEE
Confidence 9999999999999999999999987543211 1233458999999999999999999999999999999999999999
Q ss_pred EEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCC---------C---CCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 263 VNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYN---------V---FQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 263 INvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~---------~---~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
||++||.+||+++|+++|++|+|+||+||||++||+. . ..+|||++|||++|||+|++|.++.+++.+
T Consensus 231 IN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~ 310 (330)
T PRK12480 231 VNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVE 310 (330)
T ss_pred EEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999962 1 124799999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC
Q psy7383 331 MAASEIRRAIVGRIPDC 347 (501)
Q Consensus 331 ~~~~ni~~~l~G~~p~~ 347 (501)
.+++|+.+|++|+.+.+
T Consensus 311 ~~~~n~~~~~~~~~~~~ 327 (330)
T PRK12480 311 GGLNAALSVINTGTCET 327 (330)
T ss_pred HHHHHHHHHHhCCCCcc
Confidence 99999999999997653
|
|
| >KOG0068|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-61 Score=482.62 Aligned_cols=313 Identities=35% Similarity=0.511 Sum_probs=281.0
Q ss_pred EEEEecCCCCCcccccccccc-eEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHh-cCCCCcEEEEcCccccccc
Q psy7383 30 LVALLDGRDCSIEMPILKDVA-TVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLE-KFKTLRIIVRIGSGVDNID 107 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~~-~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~-~~p~LK~I~~~gaG~D~ID 107 (501)
+|++.+..+ ....+.|++.+ ++++....+.+|+..++ ++++++++...+++++++|+ ...+||+|.+.++|+||||
T Consensus 8 ~il~~e~~~-~~~~~~l~~~g~~v~~~~~~~~eel~~~i-~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 8 KILVAESLD-QACIEILKDNGYQVEFKKNLSLEELIEKI-KDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred eEEEecccc-hHHHHHHHhcCceEEEeccCCHHHHHHHh-ccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 677777654 24556777765 67776666777887665 67888888888999999999 5678999999999999999
Q ss_pred hhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHH
Q psy7383 108 VKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIG 187 (501)
Q Consensus 108 ~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG 187 (501)
+++|+++||.|.|+|.+|+.++||+++++++++.|++.+....+++|+|.... +.+.+|+|||+||+|||+||
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~-------~~G~el~GKTLgvlG~GrIG 158 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVK-------YLGWELRGKTLGVLGLGRIG 158 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecc-------eeeeEEeccEEEEeecccch
Confidence 99999999999999999999999999999999999999999999999997532 22468999999999999999
Q ss_pred HHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 188 SAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 188 ~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+.+|++++++||+|++||+.......+.+|++.+ +++|++..||||++|||+||+|++|+|++.|++||+|..+||++|
T Consensus 159 seVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aR 237 (406)
T KOG0068|consen 159 SEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVAR 237 (406)
T ss_pred HHHHHHHHhcCceEEeecCCCchHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecC
Confidence 9999999999999999999988878888999865 899999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHcCCceEEEEecCCCCCCCC-CCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy7383 268 GGLVDDDSLAAALKQGRIRAAALDVHESEPYNV-FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPD 346 (501)
Q Consensus 268 G~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~-~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~ 346 (501)
|.+||++||+++|++|+++||++|||++||... .++.|.++|||++|||+|+.|.|+..++...+++++.+|++|.
T Consensus 238 GGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~~--- 314 (406)
T KOG0068|consen 238 GGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYINGN--- 314 (406)
T ss_pred CceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhccC---
Confidence 999999999999999999999999999999752 1578999999999999999999999999999999999999983
Q ss_pred CCcccccccc
Q psy7383 347 CLRNCVNKEY 356 (501)
Q Consensus 347 ~l~N~Vn~e~ 356 (501)
....||...
T Consensus 315 -~~g~Vna~~ 323 (406)
T KOG0068|consen 315 -SAGSVNAPE 323 (406)
T ss_pred -ccceechhh
Confidence 345666553
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=475.91 Aligned_cols=278 Identities=28% Similarity=0.388 Sum_probs=245.8
Q ss_pred ChHHHHHHhhccceEEEEeccCCCCHHHHhcCCC--CcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHH
Q psy7383 59 STSEIHEKVLNEAVGALMWHTIILTKEDLEKFKT--LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCL 136 (501)
Q Consensus 59 ~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~--LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal 136 (501)
.++|+. +.+.++++++++....+++++|+++|+ ||||++.|+|+|+||+++|+++||.|+|++|+++.+||||++++
T Consensus 35 ~~~e~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~ 113 (332)
T PRK08605 35 LTDDNV-EEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQ 113 (332)
T ss_pred CCHHHH-HHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHH
Confidence 344554 344677887777667899999999997 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHH-HhCCCEEEEECCCCCchhhhh
Q psy7383 137 ILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRA-KAFGFNVIFYDPYLPDGIEKS 215 (501)
Q Consensus 137 ~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L-~afG~~Vi~~dr~~~~~~~~~ 215 (501)
||+++|++..+++.++++.|.+... ...++|+|++|||||+|.||+.+|++| ++|||+|++||++......
T Consensus 114 ~l~~~R~~~~~~~~~~~~~~~~~~~------~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~-- 185 (332)
T PRK08605 114 AINLVRHFNQIQTKVREHDFRWEPP------ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA-- 185 (332)
T ss_pred HHHHhcChHHHHHHHHhCCcccccc------cccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--
Confidence 9999999999999999998732111 112579999999999999999999999 7899999999987643321
Q ss_pred cCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCC
Q psy7383 216 LGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHES 295 (501)
Q Consensus 216 ~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~ 295 (501)
..+....++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||.++|+++|+++|++|+|+||+||||+.
T Consensus 186 ~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~ 265 (332)
T PRK08605 186 TYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEF 265 (332)
T ss_pred hhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccC
Confidence 22444458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CCCCCC-----------CCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy7383 296 EP--YNVFQG-----------NLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPD 346 (501)
Q Consensus 296 EP--l~~~~~-----------pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~ 346 (501)
|| ++. ++ +||.+|||++|||+|++|.++.+++.+.+++|+.+|++|+...
T Consensus 266 Ep~~~~~-~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~~ 328 (332)
T PRK08605 266 ERPLFPS-DQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTGTTR 328 (332)
T ss_pred CCCcccc-ccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 98 343 44 4999999999999999999999999999999999999998543
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-57 Score=461.88 Aligned_cols=267 Identities=25% Similarity=0.320 Sum_probs=231.8
Q ss_pred ccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhh-----hhhcCeEEeecCC-CCchhhHHHHHHHHHHHHh
Q psy7383 69 NEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKA-----AGELGIAVCNVPG-YGVEEVADTTLCLILNLYR 142 (501)
Q Consensus 69 ~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~a-----a~~~GI~Vtn~pg-~~a~aVAE~alal~L~l~R 142 (501)
.+++++++|.. +.+.++ .++||||++.++|+|++|.+. +.++||.|+|+++ .++.+||||++++||+++|
T Consensus 37 ~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r 112 (312)
T PRK15469 37 DPADYALVWHP---PVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFR 112 (312)
T ss_pred ccCeEEEEeCC---ChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHc
Confidence 45677777763 467775 589999999999999998322 3458999999864 6889999999999999999
Q ss_pred hHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecC
Q psy7383 143 RTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVY 222 (501)
Q Consensus 143 ~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~ 222 (501)
++..+.+.++++.|.... ..+++||||||||+|.||+.+|++|++|||+|++||++........ .+....
T Consensus 113 ~~~~~~~~~~~~~w~~~~---------~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~-~~~~~~ 182 (312)
T PRK15469 113 RFDDYQALQNSSHWQPLP---------EYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ-SFAGRE 182 (312)
T ss_pred ChHHHHHHHHhCCcCCCC---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce-eecccc
Confidence 999999999999885311 2468999999999999999999999999999999998654311100 011234
Q ss_pred CHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCC
Q psy7383 223 TLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQ 302 (501)
Q Consensus 223 sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~ 302 (501)
++++++++||+|++|+|+|++|+++|+++.|++||+|++|||++||++||++||+++|++|+|.||+||||++||++. +
T Consensus 183 ~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~-~ 261 (312)
T PRK15469 183 ELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPP-E 261 (312)
T ss_pred cHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCC-C
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999986 7
Q ss_pred CCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q psy7383 303 GNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355 (501)
Q Consensus 303 ~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e 355 (501)
+|||++|||++|||+|++|.++ ++.+++.+|+++|++|+. +.|+||++
T Consensus 262 ~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~---~~~~V~~~ 309 (312)
T PRK15469 262 SPLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLEKGER---VCGQVDRA 309 (312)
T ss_pred ChhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCC---CcccCCcc
Confidence 9999999999999999999874 688999999999999984 57889876
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=449.95 Aligned_cols=247 Identities=26% Similarity=0.356 Sum_probs=222.7
Q ss_pred hcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhc
Q psy7383 88 EKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAA 167 (501)
Q Consensus 88 ~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~ 167 (501)
..+++||||++.++|+|+||+++|++++|.++|. |.++.+||||++++||+++|++..+++.+++|.|...
T Consensus 45 ~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~-------- 115 (303)
T PRK06436 45 VPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS-------- 115 (303)
T ss_pred CCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--------
Confidence 3467999999999999999999999998888775 8889999999999999999999999999999998632
Q ss_pred cccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce-ecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 168 SGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT-RVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 168 ~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~-~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
..++|+||||||||+|+||+.+|++|++|||+|++|||+.... ++. ...++++++++||+|++|||+|++|++
T Consensus 116 -~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~ 189 (303)
T PRK06436 116 -PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-----GISSIYMEPEDIMKKSDFVLISLPLTDETRG 189 (303)
T ss_pred -CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-----CcccccCCHHHHHhhCCEEEECCCCCchhhc
Confidence 1257999999999999999999999999999999999875321 222 135899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCC-CCcHHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAA-FYSEASC 325 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiA-g~T~ea~ 325 (501)
+|+++.|++||+|++|||+|||++||+++|+++|++|+|.||+||||++||++. ++ .+|||++|||++ ++|.++.
T Consensus 190 li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~-~~---~~~nviiTPHi~g~~t~e~~ 265 (303)
T PRK06436 190 MINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIIT-ET---NPDNVILSPHVAGGMSGEIM 265 (303)
T ss_pred CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCc-cC---CCCCEEECCccccccCHHHH
Confidence 999999999999999999999999999999999999999999999999999875 44 689999999976 5899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccccccc
Q psy7383 326 TELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357 (501)
Q Consensus 326 ~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e~~ 357 (501)
+++.+++++||++|++|+. .|+||++.|
T Consensus 266 ~~~~~~~~~ni~~~~~g~~----~~~V~~~~y 293 (303)
T PRK06436 266 QPAVALAFENIKNFFEGKP----KNIVRKEEY 293 (303)
T ss_pred HHHHHHHHHHHHHHHcCCC----CceEchHHh
Confidence 9999999999999999872 488888754
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=458.51 Aligned_cols=280 Identities=25% Similarity=0.349 Sum_probs=239.1
Q ss_pred EEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchh
Q psy7383 30 LVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~ 109 (501)
||++-+... +..+.+++..++.+.... ++..+.+.++|+++++..+++++++++ .++||||+++++|+||||++
T Consensus 2 kI~~d~~~p--~~~~~~~~~~~v~~~~~~---~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~ 75 (381)
T PRK00257 2 KIVADENIP--LLDAFFAGFGEIRRLPGR---AFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLDLD 75 (381)
T ss_pred EEEEecCch--hHHHHHhhCCcEEEcCCc---ccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccCHH
Confidence 355544432 334566666677665422 222234467887777776789999997 58999999999999999999
Q ss_pred hhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHH
Q psy7383 110 AAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSA 189 (501)
Q Consensus 110 aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~ 189 (501)
+++++||.|+|++|+|+.+||||++++||++.|+. ..+|+||||||||+|+||+.
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~-------------------------g~~l~gktvGIIG~G~IG~~ 130 (381)
T PRK00257 76 YFAEAGITWSSAPGCNARGVVDYVLGSLLTLAERE-------------------------GVDLAERTYGVVGAGHVGGR 130 (381)
T ss_pred HHHHCCCEEEECCCcChHHHHHHHHHHHHHHhccc-------------------------CCCcCcCEEEEECCCHHHHH
Confidence 99999999999999999999999999999998751 13599999999999999999
Q ss_pred HHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCch----hhhhcccHHHHhcCCCCcEEEEc
Q psy7383 190 VALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNE----HNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 190 iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~----~T~~lI~~~~l~~MK~gAilINv 265 (501)
+|++|++|||+|++||+..... . +.....++++++++||+|++|+|+|+ +|++|||++.|++||+|++|||+
T Consensus 131 va~~l~a~G~~V~~~Dp~~~~~---~-~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (381)
T PRK00257 131 LVRVLRGLGWKVLVCDPPRQEA---E-GDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINA 206 (381)
T ss_pred HHHHHHHCCCEEEEECCccccc---c-cCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEEC
Confidence 9999999999999999854321 1 11224589999999999999999999 59999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q psy7383 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIP 345 (501)
Q Consensus 266 aRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p 345 (501)
+||++||++||+++|++|+|.+|+||||++||.+ +++||.. ||++|||+||+|.++..++.+++.+|+.+|+.+...
T Consensus 207 aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~--~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~ 283 (381)
T PRK00257 207 SRGAVVDNQALREALLSGEDLDAVLDVWEGEPQI--DLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPAR 283 (381)
T ss_pred CCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCC--ChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999964 6899986 999999999999999999999999999999988754
Q ss_pred CC
Q psy7383 346 DC 347 (501)
Q Consensus 346 ~~ 347 (501)
..
T Consensus 284 ~~ 285 (381)
T PRK00257 284 VS 285 (381)
T ss_pred cc
Confidence 43
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-55 Score=457.17 Aligned_cols=273 Identities=24% Similarity=0.367 Sum_probs=234.3
Q ss_pred EEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchh
Q psy7383 30 LVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~ 109 (501)
||++.+.. +...+.|++.+++.+..... +..+.+.++|+++++..+.+++++++ .++||||+++++|+||||++
T Consensus 2 kIl~d~~~--~~~~~~~~~~~ev~~~~~~~---~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~ 75 (378)
T PRK15438 2 KILVDENM--PYARELFSRLGEVKAVPGRP---IPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDEA 75 (378)
T ss_pred EEEEeCCc--chHHHHHhhcCcEEEeCCCC---CCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCHH
Confidence 36665543 34556777767777654322 11122467787777766789999985 69999999999999999999
Q ss_pred hhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHH
Q psy7383 110 AAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSA 189 (501)
Q Consensus 110 aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~ 189 (501)
+++++||.|+|++|+|+.+||||++++||++.|+. + .+|+||||||||+|+||+.
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------g----------------~~L~gktvGIIG~G~IG~~ 130 (378)
T PRK15438 76 WLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------G----------------FSLHDRTVGIVGVGNVGRR 130 (378)
T ss_pred HHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------C----------------CCcCCCEEEEECcCHHHHH
Confidence 99999999999999999999999999999998861 1 2589999999999999999
Q ss_pred HHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchh----hhhcccHHHHhcCCCCcEEEEc
Q psy7383 190 VALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEH----NHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 190 iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~----T~~lI~~~~l~~MK~gAilINv 265 (501)
+|++|++|||+|++||+..... .... ...+|++++++||||++|+|+|++ |++|||++.|++||+|++|||+
T Consensus 131 vA~~l~a~G~~V~~~dp~~~~~---~~~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (378)
T PRK15438 131 LQARLEALGIKTLLCDPPRADR---GDEG-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINA 206 (378)
T ss_pred HHHHHHHCCCEEEEECCccccc---cccc-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEEC
Confidence 9999999999999999864321 1112 235899999999999999999996 9999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 266 aRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
|||++||++||+++|++|++.||+||||++||.+ +++||...| |+|||+||+|.++..++..++++|+.+|+
T Consensus 207 aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~--~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~ 278 (378)
T PRK15438 207 CRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPEL--NVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI 278 (378)
T ss_pred CCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCC--chhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999974 578987665 99999999999999999999999999998
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-55 Score=445.98 Aligned_cols=266 Identities=33% Similarity=0.473 Sum_probs=237.0
Q ss_pred ceEEEEec-cCCCCHHHHhcC-CCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHH
Q psy7383 71 AVGALMWH-TIILTKEDLEKF-KTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLA 148 (501)
Q Consensus 71 a~~vli~~-~~~l~~e~l~~~-p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~ 148 (501)
...++.+. ...++.+.+.+. |+||+|+++|+|+||||+++|++|||+|+|+++.+.++|||++++++|.++|++...+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~ 140 (336)
T KOG0069|consen 61 SRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGN 140 (336)
T ss_pred eeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 33344443 235677777776 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHH
Q psy7383 149 NMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDL 227 (501)
Q Consensus 149 ~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdel 227 (501)
+++++|.|.+.... .....+.||||||+|+|+||+.+|++|++||+.+.+++|+... +.....+.+ ..+++++
T Consensus 141 ~~~~~g~w~~~~~~-----~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~ 214 (336)
T KOG0069|consen 141 EMVRNGGWGWAGGW-----PLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEEL 214 (336)
T ss_pred hhhhcCCccccCCc-----cccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHH
Confidence 99999998332211 1235799999999999999999999999999888888887643 333344444 4589999
Q ss_pred HhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCC
Q psy7383 228 LFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKD 307 (501)
Q Consensus 228 L~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~ 307 (501)
+.+||+|++|||+|++|+|+||++.|++||+|++|||++||.++|+++++++|++|+|.+|+||||+.|| +. +++|+.
T Consensus 215 ~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~-~~~l~~ 292 (336)
T KOG0069|consen 215 LANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PV-DHPLLT 292 (336)
T ss_pred HhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CC-Ccchhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 55 799999
Q ss_pred CCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy7383 308 APNILCTPHAAFYSEASCTELREMAASEIRRAIVGRI 344 (501)
Q Consensus 308 ~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~ 344 (501)
++||++|||+|+.|.+++.+|..+++.|+.+++.|+.
T Consensus 293 ~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~ 329 (336)
T KOG0069|consen 293 LDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKP 329 (336)
T ss_pred ccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999984
|
|
| >KOG0067|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=392.59 Aligned_cols=355 Identities=73% Similarity=1.119 Sum_probs=333.2
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCC
Q psy7383 2 DKRKMMAKRPRMDSIRGPISNGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTII 81 (501)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~m~~kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~ 81 (501)
|+=.+.++|-.--++++..-+++...+|.+++++..+|.+++++|++++.+.|||..+.+|+.++.++++...++|++..
T Consensus 5 ~~v~~~~~~~~~~~~~~~~lngp~h~~p~~aLld~rdc~vemPilk~~atvafcdaqstqeIhekvLneavgam~yh~i~ 84 (435)
T KOG0067|consen 5 DKVLTSRQREIAVGIRPLGLNGPLHPRPLVALLDGRDCGVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTIT 84 (435)
T ss_pred CCCCcchhhhccccceecccCCCCCCCcchhhcccccccccchhhhcchheeeecccchHHHHHHHHHHhhhcceeeecc
Confidence 33344444444468899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCch
Q psy7383 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPE 161 (501)
Q Consensus 82 l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~ 161 (501)
++++.+++++.||+|.+.+.|+|++|+.+|.+.||.|||.++...+.+|+-++.++|.++|+..|..+.+++|.|.+...
T Consensus 85 l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~ 164 (435)
T KOG0067|consen 85 LPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLE 164 (435)
T ss_pred cchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 162 QLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 162 ~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
+.++...+...++|.++|++|+|+.|++++.++++||+.|+.||++..+...+.+|.+++++++|++.++|.+++||-++
T Consensus 165 q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~ 244 (435)
T KOG0067|consen 165 QVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLN 244 (435)
T ss_pred hhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccceeeecccC
Confidence 88888888899999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCc
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYS 321 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T 321 (501)
+.+.++|+...+++|+.|++++|++||.++|+++|.++|+.|+|.+++ |......||.+.||.|+|||.+|++
T Consensus 245 ~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~ 317 (435)
T KOG0067|consen 245 EHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYS 317 (435)
T ss_pred cccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcccchhh
Confidence 999999999999999999999999999999999999999999999887 3222357899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCccccccccccCCCCC
Q psy7383 322 EASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFPSAGGG 363 (501)
Q Consensus 322 ~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e~~~~~~~~ 363 (501)
+.+..++.+.++..+++-+.|..|..+.||||+|+++.+--|
T Consensus 318 e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnkE~~~~~~p~ 359 (435)
T KOG0067|consen 318 EAASVELREVAALEIRRAITGRIPDSLRNCVNKEFSPTNAPW 359 (435)
T ss_pred HHHHHHHHHHHhhhhhhccCCCCchhHHHHHhhhhccccCCc
Confidence 999999999999999999999999999999999999865555
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=354.59 Aligned_cols=177 Identities=44% Similarity=0.631 Sum_probs=154.5
Q ss_pred HHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh-
Q psy7383 134 LCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI- 212 (501)
Q Consensus 134 lal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~- 212 (501)
|++||++.|++.++++.++++.|+. ......++|+|+||||||+|+||+.+|++|++|||+|++|||+.....
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~------~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~ 74 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWAS------RERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEG 74 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHH------HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHH
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCC------CcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhh
Confidence 6899999999999999999999821 112234689999999999999999999999999999999999986544
Q ss_pred hhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 213 EKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 213 ~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
....++. ..+++|++++||+|++|||+|++|+++||++.|++||+|++|||++||++||++||+++|++|+|.||+|||
T Consensus 75 ~~~~~~~-~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV 153 (178)
T PF02826_consen 75 ADEFGVE-YVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDV 153 (178)
T ss_dssp HHHTTEE-ESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS
T ss_pred cccccce-eeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEEC
Confidence 4455664 459999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeEEecCCC
Q psy7383 293 HESEPYNVFQGNLKDAPNILCTPHAA 318 (501)
Q Consensus 293 fe~EPl~~~~~pL~~~pNVilTPHiA 318 (501)
|+.||++. ++|||++|||++|||+|
T Consensus 154 ~~~EP~~~-~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 154 FEPEPLPA-DSPLWDLPNVILTPHIA 178 (178)
T ss_dssp -SSSSSST-THHHHTSTTEEEESS-T
T ss_pred CCCCCCCC-CChHHcCCCEEEeCccC
Confidence 99999986 78999999999999986
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-20 Score=199.10 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=138.1
Q ss_pred EEcCcccccc-chhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccC
Q psy7383 97 VRIGSGVDNI-DVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRG 175 (501)
Q Consensus 97 ~~~gaG~D~I-D~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~g 175 (501)
=-+++|+..+ .++..-+.+|+|+|+++.+..+++|+++++++++...+ +|.+. ..|.|
T Consensus 196 EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~------~R~~~---------------~~LaG 254 (476)
T PTZ00075 196 EETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGI------FRATD---------------VMIAG 254 (476)
T ss_pred ecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHH------HHhcC---------------CCcCC
Confidence 3467777664 23333457899999999999999999999999987433 34331 25899
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
|+|+|+|+|.||+.+|++|++|||+|+++++..... .+...|++. .+++++++++|+|++|+ .|+++|+++.|+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~at----Gt~~iI~~e~~~ 329 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTAT----GNKDIITLEHMR 329 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECC----CcccccCHHHHh
Confidence 999999999999999999999999999997664332 223356654 48999999999999984 478999999999
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCC
Q psy7383 255 QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYN 299 (501)
Q Consensus 255 ~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~ 299 (501)
+||+|++|||++|+ |++.++++|+++. ++||++.||..
T Consensus 330 ~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v 367 (476)
T PTZ00075 330 RMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQV 367 (476)
T ss_pred ccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCC
Confidence 99999999999999 7888888888754 68999999964
|
|
| >PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=161.38 Aligned_cols=100 Identities=40% Similarity=0.589 Sum_probs=81.9
Q ss_pred EEEecCCCCCcccccccc-cceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchh
Q psy7383 31 VALLDGRDCSIEMPILKD-VATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109 (501)
Q Consensus 31 IvvLd~~~~~~e~~~L~~-~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~ 109 (501)
|++++.. .+..++.|++ + ++.+++..+.+++.+. ++++++++++....+++++|+++|+||||++.|+|+|+||++
T Consensus 1 ili~~~~-~~~~~~~l~~~~-~v~~~~~~~~~~~~~~-l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~ 77 (133)
T PF00389_consen 1 ILITDPL-PDEEIERLEEGF-EVEFCDSPSEEELAER-LKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLE 77 (133)
T ss_dssp EEESSS--SHHHHHHHHHTS-EEEEESSSSHHHHHHH-HTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HH
T ss_pred eEEeccC-CHHHHHHHHCCc-eEEEeCCCCHHHHHHH-hCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHH
Confidence 4566543 3567788888 5 8999987777777655 467888777766569999999999999999999999999999
Q ss_pred hhhhcCeEEeecCCCCchhhHHHH
Q psy7383 110 AAGELGIAVCNVPGYGVEEVADTT 133 (501)
Q Consensus 110 aa~~~GI~Vtn~pg~~a~aVAE~a 133 (501)
+|+++||.|+|++|+++.+||||+
T Consensus 78 ~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 78 AAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred HHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999998
|
The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-19 Score=179.47 Aligned_cols=167 Identities=21% Similarity=0.242 Sum_probs=133.1
Q ss_pred CCCCHHHHhcCCCCcEEEEcCccccccchh-hhhhcCeEEe------ecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHH
Q psy7383 80 IILTKEDLEKFKTLRIIVRIGSGVDNIDVK-AAGELGIAVC------NVPGYGVEEVADTTLCLILNLYRRTYWLANMVR 152 (501)
Q Consensus 80 ~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~-aa~~~GI~Vt------n~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~ 152 (501)
..+++++|+++| .++...+|+++.|++ +|+++||.|+ |+..+|+.++||+++++++...
T Consensus 80 ~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~----------- 145 (287)
T TIGR02853 80 VVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT----------- 145 (287)
T ss_pred ccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc-----------
Confidence 357889999888 377788899999988 9999999999 9999999999999998777431
Q ss_pred cCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec--CCHHHHHh
Q psy7383 153 EGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV--YTLQDLLF 229 (501)
Q Consensus 153 ~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~--~sLdelL~ 229 (501)
..+++|++|+|+|+|.||+.+|++|+++|++|++++|+... ......+...+ .++++++.
T Consensus 146 -----------------~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~ 208 (287)
T TIGR02853 146 -----------------DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVA 208 (287)
T ss_pred -----------------CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhc
Confidence 02489999999999999999999999999999999997543 12223344332 35778899
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHcCCce
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGL-VDDDSLAAALKQGRIR 286 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~v-Vde~aL~~aL~~g~I~ 286 (501)
++|+|++|+|.+ +++++.++.||+++++||++...- +|. ++.++..+.
T Consensus 209 ~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G~~ 257 (287)
T TIGR02853 209 EIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRGIK 257 (287)
T ss_pred cCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCCCE
Confidence 999999999953 778899999999999999988432 343 344555554
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=148.24 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=121.8
Q ss_pred CCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCC------CchhhHHHHHHHHHHHHhhHHHHHHHHHcCC
Q psy7383 82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGY------GVEEVADTTLCLILNLYRRTYWLANMVREGK 155 (501)
Q Consensus 82 l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~------~a~aVAE~alal~L~l~R~~~~~~~~~~~g~ 155 (501)
++++.++.++++..+. .|.+.++++ +.|.++||+|++.... ++.++||.++.+++..+
T Consensus 83 ~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~-------------- 146 (296)
T PRK08306 83 LTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHT-------------- 146 (296)
T ss_pred chHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhC--------------
Confidence 4789999999996444 588899988 8899999999987754 77888888776533210
Q ss_pred ccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec--CCHHHHHhcCC
Q psy7383 156 KFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV--YTLQDLLFQSD 232 (501)
Q Consensus 156 w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~--~sLdelL~~sD 232 (501)
..++.+++|+|||+|.+|+.+++.|+.+|++|+++|++... ......|++.+ .++.+.+.++|
T Consensus 147 --------------~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aD 212 (296)
T PRK08306 147 --------------PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKID 212 (296)
T ss_pred --------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCC
Confidence 02478999999999999999999999999999999998543 23344565533 35678899999
Q ss_pred EEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 233 CVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 233 vVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+||.++|. .+++++.++.|++++++||++..
T Consensus 213 iVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 213 IIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred EEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 99999873 57889999999999999999863
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-15 Score=161.00 Aligned_cols=120 Identities=23% Similarity=0.205 Sum_probs=104.5
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+.|++|+|+|+|.||+.+|+++++||++|+++++.... ......|+.. .+++++++++|+|+. +..++++|++
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~v-v~leEal~~ADVVI~----tTGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQV-LTLEDVVSEADIFVT----TTGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCee-ccHHHHHhhCCEEEE----CCCCccchHH
Confidence 379999999999999999999999999999999887643 2334456654 379999999999987 3467899999
Q ss_pred HHHhcCCCCcEEEEcCC-CCccCHHHHHHH--HHcCCceEEEEecCCCCC
Q psy7383 251 FTIKQMRPGAFLVNTAR-GGLVDDDSLAAA--LKQGRIRAAALDVHESEP 297 (501)
Q Consensus 251 ~~l~~MK~gAilINvaR-G~vVde~aL~~a--L~~g~I~GAaLDVfe~EP 297 (501)
+.|+.||+|++|||++| +..||+++|.++ ++.+.+. +.+|+|+.|-
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 678999999998 9999998 8999998763
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-14 Score=148.94 Aligned_cols=119 Identities=22% Similarity=0.252 Sum_probs=102.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+.|++|+|+|+|.||+.+|++++++|++|+++|+.+... .+...|+. +.+++++++.+|+|+.+. .+.++|+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~-v~~leeal~~aDVVItaT----G~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKIGDIFITAT----GNKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCE-eCCHHHHHhcCCEEEECC----CCHHHHHH
Confidence 3789999999999999999999999999999998765432 23345664 347899999999998754 36899999
Q ss_pred HHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHcCCceEEEEecCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGGL-VDDDSLAAALKQGRIRAAALDVHES 295 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~v-Vde~aL~~aL~~g~I~GAaLDVfe~ 295 (501)
+.|..||+|++|+|++|+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999999888888899999874
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=142.04 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=79.8
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
..|+||||||||||.||+++|++|+.||++|++|++.... ..+...|++. .+++|++++||+|++|||+ ++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 4699999999999999999999999999999999865322 3344557764 4899999999999999997 67899999
Q ss_pred HHHHhcCCCCcEEEEc
Q psy7383 250 EFTIKQMRPGAFLVNT 265 (501)
Q Consensus 250 ~~~l~~MK~gAilINv 265 (501)
++.+..||+|++|+-.
T Consensus 90 ~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 90 AEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 9999999999987643
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-13 Score=127.53 Aligned_cols=115 Identities=23% Similarity=0.315 Sum_probs=93.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc-HHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN-EFTI 253 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~-~~~l 253 (501)
++|||||+|.||+.||++|...|++|.+||++... ......+++.+.++.|++++||+|++++|..++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 58999999999999999999999999999988643 333445788888999999999999999999888888763 2278
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+.+++|.+|||++....-+...+.+.+.+..+. ++|+
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 999999999999999999999999999988866 7885
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-12 Score=131.61 Aligned_cols=115 Identities=20% Similarity=0.250 Sum_probs=104.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~ 251 (501)
.+|+|||+|.||+.||++|...|++|.+|||+..+ +..+..|.....+..|+.+++|+||+|+|.+++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999998754 334456888888899999999999999999999999884 67
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.++.||+|++|||++..+......+.+.+++..+. +||.
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA 119 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA 119 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence 99999999999999999999999999999999987 7774
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.7e-12 Score=134.35 Aligned_cols=156 Identities=20% Similarity=0.226 Sum_probs=112.8
Q ss_pred EEcCcccccc-chhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccC
Q psy7383 97 VRIGSGVDNI-DVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRG 175 (501)
Q Consensus 97 ~~~gaG~D~I-D~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~g 175 (501)
=-+.+|+..+ .++...+.+++|.|++..+....-|...+.-.+....+ ++.. ...+.|
T Consensus 154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai-------~rat--------------~~~l~G 212 (425)
T PRK05476 154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGI-------KRAT--------------NVLIAG 212 (425)
T ss_pred ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHH-------HHhc--------------cCCCCC
Confidence 3456777654 33333457899999998887775553332222221111 0000 023789
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
++|+|+|+|.||+.+|++|+++|++|+++|+..... .....|++ +.+++++++.+|+|+.+. .+.++|+.+.|.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~ 287 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTAT----GNKDVITAEHME 287 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECC----CCHHHHHHHHHh
Confidence 999999999999999999999999999999876442 22334655 447899999999998764 467899999999
Q ss_pred cCCCCcEEEEcCCCCc-cCHHHHHH
Q psy7383 255 QMRPGAFLVNTARGGL-VDDDSLAA 278 (501)
Q Consensus 255 ~MK~gAilINvaRG~v-Vde~aL~~ 278 (501)
.||+|++++|+++... +|.++|.+
T Consensus 288 ~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 288 AMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred cCCCCCEEEEcCCCCCccChHHHhh
Confidence 9999999999999877 78887765
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=124.89 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=94.7
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc-c-HHHH
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI-N-EFTI 253 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI-~-~~~l 253 (501)
+|||||+|.||+.+|+.|...|++|++||++... +.....|.....+.++++++||+|++++|.+++++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 5899999999999999999999999999998643 22334566556688899999999999999888887775 3 3467
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
..+++++++||+++....+.++|.+.+++..+. ++|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~ 116 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD 116 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence 889999999999999998889999999987665 555
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-11 Score=123.86 Aligned_cols=112 Identities=25% Similarity=0.393 Sum_probs=96.5
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhc---CCEEEEeccCchhhhhcccHHH
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQ---SDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~---sDvVil~lPlt~~T~~lI~~~~ 252 (501)
+|||||+|.||+.+|++|...|++|++||++... +.....|.....++++++++ +|+|++++|..+.++.++ .+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence 6999999999999999999999999999987543 23344577666789999876 699999999887888888 467
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
+..+++|.+|||+++....+...+.+.+++..+. ++|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 7889999999999999999999999999988765 688
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=124.14 Aligned_cols=115 Identities=15% Similarity=0.181 Sum_probs=97.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~ 252 (501)
++|+|||+|.||..+|+.|...|++|++||++... ......+.....+..+++++||+|++++|...+++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 37999999999999999999999999999998643 222344666667889999999999999998877777764 346
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+..++++.++||++++.....+.+.+.+.+..+. ++|.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7789999999999999999999999999998876 6775
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-11 Score=123.02 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=95.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~ 252 (501)
++|||||+|.||+.+|+.|...|++|++||++... ......++....++++++.+||+|++++|.+.+++.++. .+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 47999999999999999999999999999987643 223345666667899999999999999998888888763 347
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
+..++++.+|||+++......+++.+.+++..+. ++|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~--~~d 119 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE--MLD 119 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 7889999999999999988888999999887665 445
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=115.13 Aligned_cols=102 Identities=25% Similarity=0.385 Sum_probs=73.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh-hcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-SLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.|.||++.|+|||.+|+.+|+.|+++|++|++++..+-...+. ..|++ +.++++++.++|+|+.+.- .+++|..
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~~ 94 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVITG 94 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-H
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccCH
Confidence 4899999999999999999999999999999999876443333 35665 4589999999999887643 4688999
Q ss_pred HHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGL-VDDDSLAA 278 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~v-Vde~aL~~ 278 (501)
+.|++||+|+++.|++.-.. +|.+.|.+
T Consensus 95 e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 95 EHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 99999999999999998655 56665544
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.3e-11 Score=120.25 Aligned_cols=114 Identities=26% Similarity=0.320 Sum_probs=97.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhc---CCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQ---SDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~---sDvVil~lPlt~~T~~lI~~~ 251 (501)
++|||||+|.||+.+|++|...|++|.+||++... ....+.|+....+++|+++. +|+|++++|..+.++.++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 37999999999999999999999999999998643 22344677767789998876 699999999877788877 46
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.+..++++.++||++++...+...+.+.+++..+. ++|+
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 77889999999999999999999999999999887 6785
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-10 Score=117.59 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=96.3
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHHHh
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFTIK 254 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~l~ 254 (501)
+|||||+|+||+.||++|...|++|.+||+..........|...+.+..+++++||+|++++|..++.+.++. ...+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 6999999999999999999999999999987543333445776677889999999999999998888777763 23677
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 255 QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 255 ~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.+++|.++||++....-+...+.+.+++..+. ++|.
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 78999999999999888888999999888765 7775
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=118.85 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=89.4
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI 248 (501)
..|++++|||||+|+||+++|+.|+.+|++|+++++.... ......|+... +.++++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 4589999999999999999999999999999998776432 33345577644 899999999999999997755 7787
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~ 300 (501)
+++.+..|++|++| -++.| +....+.. .-+..+||+...|..+
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G--~~i~~~~~------~p~~~~~Vi~vaPn~P 133 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG--FNIHFGQI------VPPADVDVIMVAPKGP 133 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC--CChhhcee------ccCCCCcEEEeCCCCC
Confidence 78888999999988 55566 22222111 1133567887777543
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=112.63 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=98.0
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHH-hcCCEEEEeccCchhhhhcccHH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLL-FQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL-~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
-++++|+|||+|.||+.+|+.|+.+|++|++||++.........|+....++++++ .++|+|++|+|.. .+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence 36689999999999999999999999999999988643444456776666788886 4799999999954 567777543
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCC
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHA 317 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHi 317 (501)
....++++++|++++..+-+..+++.+.+..+. . ++=+...=+... ....+...+++++|+.
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~-~--~V~~HPmaG~e~-~~~~~~~~~~~~~~~~ 174 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF-D--ILCTHPMFGPES-GKGGWAGLPFVYDKVR 174 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCCCC-e--EEecCCCCCCCC-CccccCCCeEEEecce
Confidence 356789999999999976666666666664421 1 122222222111 1234566667777764
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=123.92 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=96.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh-hhh----cCce---ecCCHHHHHhc---CCEEEEeccCchhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI-EKS----LGLT---RVYTLQDLLFQ---SDCVSLHCTLNEHN 244 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~-~~~----~gv~---~~~sLdelL~~---sDvVil~lPlt~~T 244 (501)
.+|||||+|.||+.||++|...|++|.+|||+..... ..+ .|.. .+.+++|+++. +|+|++++|..+.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 3699999999999999999999999999999865321 111 1432 45688998876 99999999999999
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+.++ ...+..|++|.++||++....-+...+.+.+++..+. ++|.
T Consensus 87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~--flda 131 (493)
T PLN02350 87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLL--YLGM 131 (493)
T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEeC
Confidence 9988 5788999999999999999999999999999999887 6664
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-10 Score=125.93 Aligned_cols=111 Identities=15% Similarity=0.223 Sum_probs=88.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHh-cCCEEEEeccCchhhhhccc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLF-QSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~-~sDvVil~lPlt~~T~~lI~ 249 (501)
.++.+++|||||+|.||+.+|+.|+.+|++|++||+..........|+....++++++. ++|+|++|+|. ..+..++.
T Consensus 365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi~ 443 (667)
T PLN02712 365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVLK 443 (667)
T ss_pred CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHHH
Confidence 46788999999999999999999999999999999875433344567766668888876 59999999994 57888887
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+-.+..||++++|||++.++-...+.+.+.+..
T Consensus 444 ~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 444 SLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 655557999999999999875555555555544
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=110.59 Aligned_cols=114 Identities=22% Similarity=0.241 Sum_probs=92.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHH---hcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLL---FQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL---~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
++|||||+|.||..+|+.|...|++|.+||++... +...+.+.....+++++. .++|+|++++|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 37999999999999999999999999999998643 222334554445666654 5689999999977 778877 46
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
....+++|.++||++.+...+...+.+.+++..+. ++|..
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda~ 118 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDCG 118 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEecC
Confidence 77889999999999999888999999999888775 67753
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=116.55 Aligned_cols=102 Identities=21% Similarity=0.248 Sum_probs=85.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+.|++|+|+|+|.||+.+|++++++|++|+++|+.... ..++..|+..+ ++++++..+|+|+.+.. +.++|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG----~~~~i~~ 273 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTG----NKDIITG 273 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCC----CHHHHHH
Confidence 478999999999999999999999999999999887543 44556777543 67889999999988643 5678888
Q ss_pred HHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGL-VDDDSLAA 278 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~v-Vde~aL~~ 278 (501)
+.|..||+|++|||+++..+ +|..+|..
T Consensus 274 ~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 274 EHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 88999999999999999876 77777664
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=110.58 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=91.7
Q ss_pred eeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHHHhcC
Q psy7383 180 IVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFTIKQM 256 (501)
Q Consensus 180 IVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~l~~M 256 (501)
|||+|.||..+|++|...|++|++||++... ......|+....++.+++++||+|++++|...+++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 6899999999999999999999999988643 233345666667899999999999999998777777763 4677789
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 257 RPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 257 K~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+++.++||++....-....+.+.+++..+. ++|.
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda 114 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA 114 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence 999999999987777778888888877765 6774
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=130.55 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=101.8
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc--cH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI--NE 250 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI--~~ 250 (501)
..++|||||+|.||..||++|...|++|.+||++... +...+.|...+.+..|+.++||+|++|+|..++++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 3578999999999999999999999999999998654 23345677778899999999999999999999988887 35
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC--ceEEEEec
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR--IRAAALDV 292 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~--I~GAaLDV 292 (501)
..++.+++|.++||++....-....+.+.+++.. +. ++|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence 6888899999999999999999999999998877 54 7885
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=117.06 Aligned_cols=114 Identities=18% Similarity=0.277 Sum_probs=96.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhh---cC--ceecCCHHHHHh---cCCEEEEeccCchhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKS---LG--LTRVYTLQDLLF---QSDCVSLHCTLNEHNH 245 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~---~g--v~~~~sLdelL~---~sDvVil~lPlt~~T~ 245 (501)
.+|||||+|.||+.||++|...|++|.+|||+.... ..+. .| +..+.+++|++. ++|+|+++++....++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 479999999999999999999999999999986531 1111 13 334678999886 5899999999998999
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.++ ++.+..|++|.++||++.+..-|...+.+.+++..+. ++|+
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~--flda 125 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL--YLGM 125 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEcC
Confidence 988 5688899999999999999999999999999999987 6774
|
|
| >KOG0409|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=110.89 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=101.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN-- 249 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~-- 249 (501)
-..++||+||+|.||..|++.|...|++|++|||+.+. ....+.|.....+..|+.+.||+||.++|...+.+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 45789999999999999999999999999999998764 334556777778999999999999999999999888873
Q ss_pred HHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 250 EFTIKQMRPGAFL-VNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 250 ~~~l~~MK~gAil-INvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
...|+..+++... |+.+.-.......|.++++..... ++|.
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA 154 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA 154 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence 4578888888887 999998888888999999998766 6663
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-09 Score=128.41 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=98.7
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc--cHH
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI--NEF 251 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI--~~~ 251 (501)
-++|||||+|.||..||++|...|++|++||++... ......|.....+..+++++||+|++|+|...+++.++ +..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 478999999999999999999999999999987643 22334566556789999999999999999988998887 456
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHc--CCceEEEEec
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQ--GRIRAAALDV 292 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~--g~I~GAaLDV 292 (501)
.+..|++|.++||++....-..+.+.+.+++ ..+. ++|.
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA 444 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA 444 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence 8889999999999999998888899999988 5554 7775
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=108.96 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=97.6
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
++|+||| +|.||+.+|+.|+..|++|++||++... ......|+....++++.+.++|+|++++|.. .+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799997 9999999999999999999999987543 2334456665567888999999999999964 455555 556
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCC
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHA 317 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHi 317 (501)
...+++++++++++.......+++.+.+..+ .. ++.. -|......+++....+++||+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCC
Confidence 6789999999999986555555666555432 11 3332 3331113467777889999975
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-09 Score=113.06 Aligned_cols=113 Identities=17% Similarity=0.279 Sum_probs=92.6
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhc-----CceecCCHHHHH---hcCCEEEEeccCchhhhhc
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSL-----GLTRVYTLQDLL---FQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~-----gv~~~~sLdelL---~~sDvVil~lPlt~~T~~l 247 (501)
.|||||+|.||+.||++|...|++|.+|||+.... ...+. ++....++++++ +++|+|++++|....+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 38999999999999999999999999999986432 11112 244455777776 4699999999988888888
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+ .+.+..+++|.++||++....-|...+.+.+++..+. ++|+
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda 122 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS 122 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence 8 4677889999999999999889999999999988886 7775
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.9e-09 Score=115.92 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=82.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHH-hcCCEEEEeccCchhhhhcccHH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLL-FQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL-~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
-+.++|||||+|.||+.+|+.|+.+|++|++||++.........|+....++++++ .++|+|++|+|. ..+..++.+-
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l 128 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL 128 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence 44578999999999999999999999999999987544445556777666888866 569999999995 4678887654
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAAL 280 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL 280 (501)
.+..||++++|+|++.-+..-.+++.+.+
T Consensus 129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l 157 (667)
T PLN02712 129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYL 157 (667)
T ss_pred hhhcCCCCeEEEECCCCcHHHHHHHHHhc
Confidence 45679999999999765432223444444
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.9e-09 Score=106.12 Aligned_cols=117 Identities=22% Similarity=0.365 Sum_probs=93.5
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
+.||++.|.|||.+|+.+|++|+++|++|+++.-.+-...+.......+.+++|....+||++.+. .++++|..+.
T Consensus 207 iaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~T----GnkdVi~~eh 282 (420)
T COG0499 207 LAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTAT----GNKDVIRKEH 282 (420)
T ss_pred ecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEcc----CCcCccCHHH
Confidence 899999999999999999999999999999998766555554433334568999999999998765 4689999999
Q ss_pred HhcCCCCcEEEEcCCCCc-cCHHHHHHH-HHcCCceEEEEecCC
Q psy7383 253 IKQMRPGAFLVNTARGGL-VDDDSLAAA-LKQGRIRAAALDVHE 294 (501)
Q Consensus 253 l~~MK~gAilINvaRG~v-Vde~aL~~a-L~~g~I~GAaLDVfe 294 (501)
|..||+|+++.|.+.-.+ ||.+.|.+. ++...++. .+|-|+
T Consensus 283 ~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~-~V~ey~ 325 (420)
T COG0499 283 FEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRP-QVDEYE 325 (420)
T ss_pred HHhccCCeEEecccccceeccHHHHHHhhhhHhcccc-CceEEE
Confidence 999999999999998777 677777643 44455554 344443
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=105.15 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=75.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
|+||+|||||+|+||+++|+.|+.+|++|+++++.... ....+.|+.. .+.++++++||+|++++|...+ ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-GTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-CCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 57899999999999999999999999998876654322 2223557764 4788999999999999995433 444556
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~ 277 (501)
+....|+++. +|.++.| ++...+.
T Consensus 79 ei~~~l~~g~-iVs~aaG--~~i~~~~ 102 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHG--FNIHFVQ 102 (314)
T ss_pred HHHhhCCCCc-EEEEeCC--ccHhhcc
Confidence 6778899886 8888888 4444443
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.5e-08 Score=98.66 Aligned_cols=104 Identities=25% Similarity=0.231 Sum_probs=78.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh------------hhhc------------CceecCCHHHHHhcC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI------------EKSL------------GLTRVYTLQDLLFQS 231 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~------------~~~~------------gv~~~~sLdelL~~s 231 (501)
++|+|||+|.||..||+.+...|++|++||++..... ..+. +...+.+..+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 5799999999999999999999999999998753210 0011 111122223568999
Q ss_pred CEEEEeccCchhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHc
Q psy7383 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV-NTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 232 DvVil~lPlt~~T~~lI~~~~l~~MK~gAilI-NvaRG~vVde~aL~~aL~~ 282 (501)
|+|+.++|..++.+..+-++..+.++++++|+ |++.- ....+.+.+..
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~ 133 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR 133 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence 99999999999998888788888899999997 77664 45556666543
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=94.75 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=80.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC----EEEEE-CCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF----NVIFY-DPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~----~Vi~~-dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
++|||||+|+||+.|++.|...|+ +|++| ||+... ......|+....+..+++.+||+|+++++ ....+.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 479999999999999999999888 89999 876533 22334677766788899999999999996 45566666
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
.+....++++.++|++.-| +..+.+.+.+..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 3555678899999988766 577777766543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-08 Score=99.40 Aligned_cols=135 Identities=22% Similarity=0.199 Sum_probs=85.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCc-eecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGL-TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv-~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
++|+|||+|.||+.+|+.|+..|++|++||++... +.....+. ....+..+.+++||+|++++|... +..++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHH
Confidence 37999999999999999999999999999987532 22223332 222223357899999999999543 33333 5667
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC---CCC--CCCCCCCCCCCCCeEEecCCC
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE---SEP--YNVFQGNLKDAPNILCTPHAA 318 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe---~EP--l~~~~~pL~~~pNVilTPHiA 318 (501)
..+++++++++++.-.. . +++++.+..-. ++.... .|. ......-|+.-.++++||+-.
T Consensus 79 ~~l~~~~ii~d~~Svk~---~-~~~~~~~~~~~--~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~ 142 (279)
T PRK07417 79 PALPPEAIVTDVGSVKA---P-IVEAWEKLHPR--FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTEN 142 (279)
T ss_pred HhCCCCcEEEeCcchHH---H-HHHHHHHhhCC--ceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCC
Confidence 77899999999987542 2 23333222111 233221 110 000112366778899999754
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.2e-08 Score=98.47 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=92.0
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc-hhhhhcCc--eecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD-GIEKSLGL--TRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~-~~~~~~gv--~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
-++|+|||+|.||+.+|+.|+..|. +|++||++... ......|+ ....++++++.++|+|++++|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4689999999999999999998885 89999987532 22233443 22346788899999999999953 233333
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCC---CCC--CCCCCCCCCCCCeEEecCCCCCcHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHES---EPY--NVFQGNLKDAPNILCTPHAAFYSEAS 324 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~---EPl--~~~~~pL~~~pNVilTPHiAg~T~ea 324 (501)
++....++++.++++++....-..+++.+.+.. .+. +++...- |-. ......|+.-.++++||+.+. +.++
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~-~~~~ 159 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-DPAA 159 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC-CHHH
Confidence 455677899999999977542222333333322 222 4443221 100 011235667778999997543 4444
Q ss_pred HH
Q psy7383 325 CT 326 (501)
Q Consensus 325 ~~ 326 (501)
.+
T Consensus 160 ~~ 161 (307)
T PRK07502 160 VA 161 (307)
T ss_pred HH
Confidence 33
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-08 Score=84.89 Aligned_cols=89 Identities=22% Similarity=0.332 Sum_probs=66.1
Q ss_pred eEEeeccchHHHHHHHHHHhCC---CEEEEE-CCCCCc--hhhhhcCceecC-CHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFG---FNVIFY-DPYLPD--GIEKSLGLTRVY-TLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG---~~Vi~~-dr~~~~--~~~~~~gv~~~~-sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
||||||+|+||+++++.|...| .+|+.+ +|+.+. ...+..++.... +..|++.++|+|++++|.. ....++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 6999999999999999999999 999954 887643 344556655444 7899999999999999943 233333
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy7383 250 EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG 268 (501)
.+. ....++.+||++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 667789999998644
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=94.96 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=82.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhh-------hc-----------------CceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEK-------SL-----------------GLTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~-------~~-----------------gv~~~~sLdelL~~ 230 (501)
++|+|||+|.||..+|..|...|++|++||++... +... .. .+....++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999987432 1100 00 12334578889999
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL-VNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAil-INvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
||+|+.|+|...+.+..+-.+..+.++++++| +|+|.-. ...+.+.++. .-...++..|
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~---~~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS---PTEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEEecC
Confidence 99999999988777666656677888999877 7887744 4556665543 2222355555
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-08 Score=100.54 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=68.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
.+++|+|||+|.||+.+|++|...|++|.+|+|+.. .+++++++++|+|++++|. ...+.+++. ..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~------------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~ 68 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG------------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQ 68 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC------------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HH
Confidence 457899999999999999999999999999998642 3678899999999999997 467777633 32
Q ss_pred h-cCCCCcEEEEcCCCCc
Q psy7383 254 K-QMRPGAFLVNTARGGL 270 (501)
Q Consensus 254 ~-~MK~gAilINvaRG~v 270 (501)
. .+++++++|++++|-.
T Consensus 69 ~~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 69 ALNLPPETIIVTATKGLD 86 (308)
T ss_pred HhcCCCCcEEEEeCCccc
Confidence 3 4789999999988543
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-08 Score=92.94 Aligned_cols=93 Identities=27% Similarity=0.347 Sum_probs=68.2
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
|++|+|+|||||..|++.|..|+..|.+|++-.+..+. ..+++.|++. .+.+|+++++|+|++.+|.. ....++.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD~-~q~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPDE-VQPEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-HH-HHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCChH-HHHHHHHH
Confidence 68999999999999999999999999999988877552 4556678774 58999999999999999943 23455668
Q ss_pred HHHhcCCCCcEEEEcCCC
Q psy7383 251 FTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG 268 (501)
+....||+|+.|+ .+.|
T Consensus 80 ~I~p~l~~G~~L~-fahG 96 (165)
T PF07991_consen 80 EIAPNLKPGATLV-FAHG 96 (165)
T ss_dssp HHHHHS-TT-EEE-ESSS
T ss_pred HHHhhCCCCCEEE-eCCc
Confidence 8888999999775 4455
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-07 Score=92.35 Aligned_cols=139 Identities=16% Similarity=0.145 Sum_probs=94.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhh-------------------------hcCceecCCHHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEK-------------------------SLGLTRVYTLQDLLF 229 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~-------------------------~~gv~~~~sLdelL~ 229 (501)
++|+|||.|.||..+|..+...|.+|++||++... +... ...+....+++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 57999999999999999999999999999987531 0000 012334567888999
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc-CCceEEEEecCCCCCCCCCCCCCCCC
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ-GRIRAAALDVHESEPYNVFQGNLKDA 308 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~-g~I~GAaLDVfe~EPl~~~~~pL~~~ 308 (501)
.||+|+.++|...+.+.-+-++....++++++|+..+.. +....+.+.++. .++.| +-. .+|.+..
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~r~vg--~Hf---------~~p~~~~ 150 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPEKFLA--LHF---------ANEIWKN 150 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcccEEE--EcC---------CCCCCcC
Confidence 999999999976666655556677788999988544333 344566666543 22332 221 2355667
Q ss_pred CCeEEecCCCCCcHHHHHHH
Q psy7383 309 PNILCTPHAAFYSEASCTEL 328 (501)
Q Consensus 309 pNVilTPHiAg~T~ea~~~~ 328 (501)
+.|.++|+-. .+++..+.+
T Consensus 151 ~lvevv~~~~-t~~~~~~~~ 169 (287)
T PRK08293 151 NTAEIMGHPG-TDPEVFDTV 169 (287)
T ss_pred CeEEEeCCCC-CCHHHHHHH
Confidence 8888888744 344544443
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=100.40 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=77.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCcee--cCCHHHHH---------------hcCCEEEEec
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTR--VYTLQDLL---------------FQSDCVSLHC 238 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~--~~sLdelL---------------~~sDvVil~l 238 (501)
++|+|||+|.||..+|..|+..|++|++||++...-.....|... -..+++++ ++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 689999999999999999999999999999875432111112111 11344443 3799999999
Q ss_pred cCc------hhhhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 239 TLN------EHNHHLI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 239 Plt------~~T~~lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
|.. ++...+. -+.....+++|+++|+.+.-.+-..+.+...+.+.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 953 2223332 24567789999999999998877777787766653
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=100.86 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=92.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce----------------ecCCHHHHHhcCCEEEEec
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT----------------RVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~----------------~~~sLdelL~~sDvVil~l 238 (501)
.++|||||+|.||..+|..|.. |++|++||++...-.....|.. .+.+..+.+++||++++|+
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 4789999999999999999877 7999999987643211112211 2233345789999999999
Q ss_pred cCc------hhhhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC--Cce-E-EEEecCCCCCCCCC--CCC
Q psy7383 239 TLN------EHNHHLI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG--RIR-A-AALDVHESEPYNVF--QGN 304 (501)
Q Consensus 239 Plt------~~T~~lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g--~I~-G-AaLDVfe~EPl~~~--~~p 304 (501)
|.. ++...++ .+...+.+++|.++|+.|.-.+-..+.+++.+.+. .+. + ...=+|-.||+... .+.
T Consensus 85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~ 164 (425)
T PRK15182 85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR 164 (425)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence 964 3445555 35577889999999999999888777665444332 222 1 11114677888641 234
Q ss_pred CCCCCCeEE
Q psy7383 305 LKDAPNILC 313 (501)
Q Consensus 305 L~~~pNVil 313 (501)
+...+.|+.
T Consensus 165 ~~~~~riv~ 173 (425)
T PRK15182 165 LTNIKKITS 173 (425)
T ss_pred ccCCCeEEE
Confidence 556666654
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-07 Score=96.39 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=80.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC----EEEEECCCCCch-h-hhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF----NVIFYDPYLPDG-I-EKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~----~Vi~~dr~~~~~-~-~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
++|||||+|+||++|++.|...|+ +|++|||+.... . .+..|+....+.++++.+||+|+++++. .....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 579999999999999999988774 699999875431 1 2236776666888999999999999994 5566665
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
++....++++.++|++.-| |+.+.|.+.|.
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 3455567889999999999 88888888774
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-08 Score=105.00 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=72.8
Q ss_pred cccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCC------C-CchhhhhcCceecCCHHHHHhcCCEEEEeccCch
Q psy7383 170 CARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY------L-PDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 170 ~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~------~-~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
...|+||||+|||||.+|+.-|..|+..|.+|++--|. . ....+.+.|+. +.+++|++++||+|++.+|++
T Consensus 31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~-v~~~~Ea~~~ADvVviLlPDt- 108 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQADLVINLTPDK- 108 (487)
T ss_pred hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCc-cCCHHHHHHhCCEEEEcCChH-
Confidence 35699999999999999997777777777777733322 1 11223335665 468999999999999999998
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+ ++.++++.+..||+|++|. .|.|
T Consensus 109 ~-q~~v~~~i~p~LK~Ga~L~-fsHG 132 (487)
T PRK05225 109 Q-HSDVVRAVQPLMKQGAALG-YSHG 132 (487)
T ss_pred H-HHHHHHHHHhhCCCCCEEE-ecCC
Confidence 4 7777799999999999874 4454
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-07 Score=96.32 Aligned_cols=135 Identities=24% Similarity=0.285 Sum_probs=89.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhc--Cce--ecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSL--GLT--RVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~--gv~--~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++|+|||+|.||+.+|+.|+..|++|.+|++..... ..... ++. ...++++++++||+|++++|.. .+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 479999999999999999999999998888765432 22222 221 1246788899999999999964 5666663
Q ss_pred HHHh-cCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC--------CCCCCCCCCCeEEecCCC
Q psy7383 251 FTIK-QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV--------FQGNLKDAPNILCTPHAA 318 (501)
Q Consensus 251 ~~l~-~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~--------~~~pL~~~pNVilTPHiA 318 (501)
+... .+++++++++++.-+.-..+++.+.+. .... +++.. |..- .+..|+.....++||+-.
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~ 149 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDH 149 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCC
Confidence 3434 489999999998866433333333321 2222 44432 4321 012466667789999754
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-07 Score=89.46 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=83.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHh-cCCEEEEeccCchhhhhcc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLF-QSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~-~sDvVil~lPlt~~T~~lI 248 (501)
+++||+|+|+|+|+||+.+|++|..+|++|+++|++... ......+.+.+ +.++++. +||+++.+.. .++|
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~~I 98 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GGVI 98 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----cccc
Confidence 589999999999999999999999999999999987542 12223355544 4566665 8999986654 4789
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+++.++.|+. -+++.-+-+.+.| ..-.+.|++..|.
T Consensus 99 ~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 99 NDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred CHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 9999999984 5788888887766 5567788888876
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-07 Score=93.47 Aligned_cols=103 Identities=12% Similarity=0.139 Sum_probs=78.6
Q ss_pred CCeEEeeccchHHHHHHHHHHhCC----CEEEEECCCCCc---hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLPD---GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~~---~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
.++|+|||+|+||++|++.|...| .+|++|||+..+ ......++....+..+++.+||+|++++|.. +...+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHHH
Confidence 468999999999999999999887 789999986532 2223357766668889999999999999943 34444
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
+ .+....++++.+||++.-| +..+.|.+.+.
T Consensus 82 l-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~ 112 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ 112 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 4 4555667889999999766 57777777654
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=92.78 Aligned_cols=116 Identities=24% Similarity=0.299 Sum_probs=99.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHH---HhcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDL---LFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdel---L~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
+++|+||+|+||..++++|...|.+|++||++... +..+..+.+.+.+++|+ |...-+|.+++|...-|..+| ++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 47899999999999999999999999999998743 34455667777788887 456799999999887777777 46
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
+-..|.+|-++|+-+....-|.....+.|++..|. +|||=.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence 77889999999999999999999999999999998 899853
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.3e-07 Score=91.39 Aligned_cols=132 Identities=17% Similarity=0.301 Sum_probs=83.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc-hhhhhcCce-ecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD-GIEKSLGLT-RVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~-~~~~~~gv~-~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
++|+|||+|.||+.+|+.|+..|. +|++||++... ......|+. ...+++++. ++|+|++++|... +..++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HH
Confidence 379999999999999999998775 89999987532 222344542 334677765 5999999999543 44444 34
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCC---C---CCCCCCCCCCCCCCeEEecCC
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHES---E---PYNVFQGNLKDAPNILCTPHA 317 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~---E---Pl~~~~~pL~~~pNVilTPHi 317 (501)
... +++++++++++.- ...+.+.+.+.. .+.+++.... | |... ...|++-..++++|.-
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~~~-~~~~v~~hPmaG~e~~Gp~~a-~~~l~~g~~~il~~~~ 142 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPKHI-RKNFIAAHPMAGTENSGPKAA-IKGLYEGKVVVLCDVE 142 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHHhc-CCCEEecCCcCcCchhhHHhc-cHHHhCCCeEEEecCC
Confidence 556 8999999997552 344555554431 1124444332 1 1111 1135555567888854
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.3e-07 Score=94.89 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=76.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhh------------------hcC-ceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEK------------------SLG-LTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~------------------~~g-v~~~~sLdelL~~sDvV 234 (501)
++|+|||+|.||..+|..|...|++|++||++...- ... ..| +....++++++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 379999999999999999999999999999875321 110 013 44445788889999999
Q ss_pred EEeccCchh------hhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q psy7383 235 SLHCTLNEH------NHHLI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAAAL 280 (501)
Q Consensus 235 il~lPlt~~------T~~lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~aL 280 (501)
++++|.... ...+. -.+..+.++++.++|+++.-.+=..+.+.+.+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 999995432 12222 24566778999999999876555666665444
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.3e-08 Score=100.76 Aligned_cols=95 Identities=23% Similarity=0.405 Sum_probs=74.5
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCce---e---cCCHHHHHhcCCEEEEeccCc-h
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLT---R---VYTLQDLLFQSDCVSLHCTLN-E 242 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~---~---~~sLdelL~~sDvVil~lPlt-~ 242 (501)
.+.+++|.|||+|.+|+.+++.|+.+|++|+++|++... ......+.. . ...+++.++++|+||.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 467889999999999999999999999999999987532 111222221 1 124677889999999998652 3
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINva 266 (501)
.+..+|+++.++.||++++|||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 356789999999999999999997
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.9e-07 Score=93.71 Aligned_cols=105 Identities=22% Similarity=0.290 Sum_probs=82.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh------------hhc---------CceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE------------KSL---------GLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~------------~~~---------gv~~~~sLdelL~~sDvV 234 (501)
++|+|||.|.||..+|..+...|++|++||+....... ... .+....++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999987531100 001 124456888999999999
Q ss_pred EEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 235 il~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+-++|.+.+.+..+-++..+.++++++| .++... +...++.+.++.
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~-l~~s~la~~~~~ 133 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAII-ASSTSG-LLPTDFYARATH 133 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCc-cCHHHHHHhcCC
Confidence 9999999999998888999999999955 444433 566777777754
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.6e-07 Score=93.21 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=69.7
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
..++|+||| +|.||+.+|+.|+..|++|.+||+.. ..+.++++++||+|++|+|... +..++ ++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~------------~~~~~~~~~~aDlVilavP~~~-~~~~~-~~l 162 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD------------WDRAEDILADAGMVIVSVPIHL-TEEVI-ARL 162 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc------------chhHHHHHhcCCEEEEeCcHHH-HHHHH-HHH
Confidence 458899998 99999999999999999999999742 1256788999999999999663 45555 344
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHH
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAA 278 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~ 278 (501)
.. ++++++|++++.-+..-.+++.+
T Consensus 163 ~~-l~~~~iv~Dv~SvK~~~~~~~~~ 187 (374)
T PRK11199 163 PP-LPEDCILVDLTSVKNAPLQAMLA 187 (374)
T ss_pred hC-CCCCcEEEECCCccHHHHHHHHH
Confidence 44 99999999997754333334443
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.8e-07 Score=89.45 Aligned_cols=102 Identities=24% Similarity=0.285 Sum_probs=75.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhh-----------hcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEK-----------SLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~-----------~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||.|.||..+|..+...|++|++||++.... ... ..+ +....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 679999999999999999999999999999875321 100 012 23344664 4789
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHH
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV-NTARGGLVDDDSLAAALK 281 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilI-NvaRG~vVde~aL~~aL~ 281 (501)
||+|+.++|...+.+..+-++..+.++++++|+ |++.-. ...|.+.+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~ 132 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATD 132 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcC
Confidence 999999999877766655567778899999998 666543 346777664
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.3e-07 Score=96.89 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=82.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh--h------------------hcC-ceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE--K------------------SLG-LTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~--~------------------~~g-v~~~~sLdelL~~sDvV 234 (501)
++|+|||+|.||..+|..|...|++|++||++...... . ..+ +....++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 57999999999999999999999999999987542110 0 112 45566888999999999
Q ss_pred EEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCC
Q psy7383 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHES 295 (501)
Q Consensus 235 il~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~ 295 (501)
+.++|...+.+..+-++..+.++++++|+....| +....|.+.+..... ..+|-+-+
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~~s~l~~~~~~~~r--~~~~hP~n 141 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FLPSDLQEGMTHPER--LFVAHPYN 141 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCcce--EEEEecCC
Confidence 9999988776765545555667888765444444 446677777755332 25554433
|
|
| >KOG1370|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-07 Score=95.67 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=78.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhh-cCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS-LGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~-~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
+.||.+.|.|||..|+..|+.|++||.+|++....+-.++... .|++ +.+++|++++.||++.+. ..+++|..+
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~-V~tm~ea~~e~difVTtT----Gc~dii~~~ 286 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE-VTTLEEAIREVDIFVTTT----GCKDIITGE 286 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE-eeeHHHhhhcCCEEEEcc----CCcchhhHH
Confidence 7899999999999999999999999999999866554444433 3444 569999999999998754 468899999
Q ss_pred HHhcCCCCcEEEEcCCCCc
Q psy7383 252 TIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~v 270 (501)
.|.+||.++++.|++.-.+
T Consensus 287 H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHhCcCCcEEeccccccc
Confidence 9999999999999998655
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-06 Score=89.76 Aligned_cols=136 Identities=17% Similarity=0.205 Sum_probs=90.8
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch---hhhhcCceec--CCH-HHHHhcCCEEEEeccCchhhhhcc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG---IEKSLGLTRV--YTL-QDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~---~~~~~gv~~~--~sL-delL~~sDvVil~lPlt~~T~~lI 248 (501)
-++|+|+|+|.||+.+|+.++..|..|.++++....+ ....+|+... .+. .+.+.++|+|++++|-. .|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 3689999999999999999999999886666554322 2233554321 222 56788899999999954 455555
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCC--CCCCCCCCCeEEecCCC
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVF--QGNLKDAPNILCTPHAA 318 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~--~~pL~~~pNVilTPHiA 318 (501)
++....+|+|+++++++.-+---.+++.+.+.+.. . +...=|+--. +.+|+..-.+|+||.-.
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~-----~vg~HPM~G~~~~~~lf~~~~~vltp~~~ 146 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-R-----FVGGHPMFGPEADAGLFENAVVVLTPSEG 146 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-e-----eEecCCCCCCcccccccCCCEEEEcCCCC
Confidence 45555899999999998866544445554443321 1 1223343211 35788888899999644
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.8e-07 Score=83.05 Aligned_cols=109 Identities=17% Similarity=0.298 Sum_probs=79.5
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCc--hhhhhcCc----eecCCHHHHHhcCCEEEEeccCchh-h
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPD--GIEKSLGL----TRVYTLQDLLFQSDCVSLHCTLNEH-N 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~--~~~~~~gv----~~~~sLdelL~~sDvVil~lPlt~~-T 244 (501)
+.+++|+|+|+|.||+.+++.|...| .+|.+||++... ...+..+. ....++++++.++|+|++++|.... .
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~ 96 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPG 96 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCC
Confidence 66899999999999999999999986 789999987543 22223332 1334677889999999999997643 1
Q ss_pred hh-cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 245 HH-LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 245 ~~-lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
.. .+.. ..++++.+++|++.-... + .|.+.+++..+.
T Consensus 97 ~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~ 134 (155)
T cd01065 97 DELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALGAK 134 (155)
T ss_pred CCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCc
Confidence 22 2332 236899999999876533 3 788888877653
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-06 Score=88.33 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=87.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hh-----------hhhcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GI-----------EKSLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~-----------~~~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||.|.||..+|..|...|++|++||++... +. ....| +....++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 47999999999999999999999999999987532 11 01122 2445688899999
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPN 310 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pN 310 (501)
||+|+.++|...+.+..+-.+.-+.+++..+++.... ......+.+.+..... ...|-+-. |.. ..+=
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts--~~~~~~la~~~~~~~~--~~~~hp~~-p~~-------~~~l 150 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTS--ALLASAFTEHLAGRER--CLVAHPIN-PPY-------LIPV 150 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC--CCCHHHHHHhcCCccc--EEEEecCC-Ccc-------cCce
Confidence 9999999997655444443333333455555543333 2456667777754332 24454432 211 1123
Q ss_pred eEEecCCCCCcHHHHHH
Q psy7383 311 ILCTPHAAFYSEASCTE 327 (501)
Q Consensus 311 VilTPHiAg~T~ea~~~ 327 (501)
|.++||-.+ +++..++
T Consensus 151 veiv~~~~t-~~~~~~~ 166 (308)
T PRK06129 151 VEVVPAPWT-APATLAR 166 (308)
T ss_pred EEEeCCCCC-CHHHHHH
Confidence 678887543 3444443
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.2e-07 Score=93.60 Aligned_cols=102 Identities=20% Similarity=0.167 Sum_probs=76.5
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhc--------C------ceecCCHHHHHhcCCEEEEecc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSL--------G------LTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~--------g------v~~~~sLdelL~~sDvVil~lP 239 (501)
.++|+|||+|.||..+|.+|...|++|.+|+|+... +..... + +....+++++++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 358999999999999999999999999999997432 111111 2 3345578888999999999999
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCC-CccC--HHHHHHHHHc
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARG-GLVD--DDSLAAALKQ 282 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG-~vVd--e~aL~~aL~~ 282 (501)
.. ++ ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 55 22 5666889999999999997 3222 4566666654
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-06 Score=87.13 Aligned_cols=115 Identities=23% Similarity=0.230 Sum_probs=81.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-h-----------hhhcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-I-----------EKSLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~-----------~~~~g-------------v~~~~sLdelL~~ 230 (501)
++|||||.|.||..||..+...|++|+.||+..... . ..+.| +....++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 489999999999999999999999999999875421 1 11112 1234566 45899
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQM-RPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~M-K~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
||+|+-++|.+.+.+..+-.+.-+.+ +++++|++.+.+ +...++..+++... ...++..|.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~--~~~~~la~~~~~~~-r~~g~hf~~ 146 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS--IPIMKLAAATKRPG-RVLGLHFFN 146 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCCc-cEEEEecCC
Confidence 99999999999998888766555555 899999988776 44455555443321 123455554
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-06 Score=95.45 Aligned_cols=113 Identities=27% Similarity=0.335 Sum_probs=84.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-h-----------hhhcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-I-----------EKSLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~-----------~~~~g-------------v~~~~sLdelL~~ 230 (501)
++|||||.|.||..||..+...|++|++||++...- . ..+.| +....++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 679999999999999999999999999999875421 1 11223 344557765 569
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHc-CCceEEEEecCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL-VNTARGGLVDDDSLAAALKQ-GRIRAAALDVHE 294 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAil-INvaRG~vVde~aL~~aL~~-g~I~GAaLDVfe 294 (501)
||+||.++|.+.+.+..+-.+.-..++++++| +|+|.-.+ ..|.++++. .++ .++..|.
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~ 147 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFN 147 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecC
Confidence 99999999999998888776666677899999 59988554 466666653 333 3556555
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=100.03 Aligned_cols=137 Identities=17% Similarity=0.168 Sum_probs=92.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCCc-hhhhhcCce--ecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPD-GIEKSLGLT--RVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~-~~~~~~gv~--~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++|+|||+|.||+.+++.|+..| .+|++||++... ....+.|+. ...++++++.++|+|++++|.. .+..++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999988 589999987643 223344543 2346788899999999999954 344444 3
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCC--------CCCCCCCCCCCeEEecCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYN--------VFQGNLKDAPNILCTPHAAF 319 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~--------~~~~pL~~~pNVilTPHiAg 319 (501)
+....++++.++++++.-.....+.+.+.+....+ .+...=|.. ..+..|+.-.++++||+...
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 44556788999999988553335555555543222 222222321 11235777788899997543
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-07 Score=93.47 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=91.9
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||+|+|||.| .||+.||.+|...|++|++|+++.. ++.+++++||+|+++++.. +++..
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~-------------~l~e~~~~ADIVIsavg~~----~~v~~ 218 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST-------------DAKALCRQADIVVAAVGRP----RLIDA 218 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC-------------CHHHHHhcCCEEEEecCCh----hcccH
Confidence 5999999999996 9999999999999999999986531 6889999999999999854 45655
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC--CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG--RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTEL 328 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g--~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~ 328 (501)
.. +|+|+++||++--.+.+ +| ++.| ||-.++-.. .--.+||=-+|.-.=+..-+
T Consensus 219 ~~---ik~GaiVIDvgin~~~~---------~g~~kl~G---Dvdf~~~~~---------~a~~iTPVPGGVGp~Tva~L 274 (301)
T PRK14194 219 DW---LKPGAVVIDVGINRIDD---------DGRSRLVG---DVDFDSALP---------VVSAITPVPGGVGPMTIAFL 274 (301)
T ss_pred hh---ccCCcEEEEecccccCC---------CCCcceec---ccchHHHHh---------hcceecCCCCchhHHHHHHH
Confidence 44 89999999998654321 13 5555 764222110 11368997777655554545
Q ss_pred HHHHHHHHHHHHh
Q psy7383 329 REMAASEIRRAIV 341 (501)
Q Consensus 329 ~~~~~~ni~~~l~ 341 (501)
.+-+++..+++..
T Consensus 275 ~~N~~~a~~~~~~ 287 (301)
T PRK14194 275 MKNTVTAARLQAH 287 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-07 Score=92.61 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=79.0
Q ss_pred CCeEEeeccchHHHHHHHHHHh--CCCEEE-EECCCCCc--hhhhhcCc-eecCCHHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA--FGFNVI-FYDPYLPD--GIEKSLGL-TRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a--fG~~Vi-~~dr~~~~--~~~~~~gv-~~~~sLdelL~~sDvVil~lPlt~~T~~lI 248 (501)
..+|||||+|.||+.+++.+.. .+++|. +||+.... ......+. ..+.++++++.++|+|++|+|... ..-+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~--h~e~ 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV--LRAI 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH--HHHH
Confidence 4789999999999999999986 488876 67876543 22233443 345689999999999999998432 2222
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
..+.++.|.-++..+++.+.+.++|.++++++...
T Consensus 84 ---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 84 ---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred ---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 23334667667778899888899999998887654
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-06 Score=89.38 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=83.1
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHh-CCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKA-FGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~a-fG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+...||+|||+ |.||+.+|+.|+. ++.+|++||+... ...++++.+++||+|++|+|.. .+..++.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~----------~~~~~~~~v~~aDlVilavPv~-~~~~~l~- 69 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP----------GSLDPATLLQRADVLIFSAPIR-HTAALIE- 69 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc----------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 45679999999 9999999999986 5999999997411 1236788899999999999954 3445542
Q ss_pred HHH---hcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC-CCCCCCCCCCeEEecC
Q psy7383 251 FTI---KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV-FQGNLKDAPNILCTPH 316 (501)
Q Consensus 251 ~~l---~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~-~~~pL~~~pNVilTPH 316 (501)
+.. ..+|++++++|++.-+- .+++++..... ++.-.=|.-- ..+.+++.-++++||.
T Consensus 70 ~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 70 EYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred HHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 232 24899999999998552 22222222111 1222334321 1245677778999987
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.6e-06 Score=86.90 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=74.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhh-----hcC--------------ceecCCHHHHHhcCCEEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEK-----SLG--------------LTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~-----~~g--------------v~~~~sLdelL~~sDvVi 235 (501)
++|+|||+|.||..+|..|...|++|++||++... +... ..+ +....++++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 57999999999999999999999999999986532 1110 011 233456788899999999
Q ss_pred EeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc-CCceE
Q psy7383 236 LHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ-GRIRA 287 (501)
Q Consensus 236 l~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~-g~I~G 287 (501)
+++|...+...-+-++.-..++++++|+...-| +....|.+.+.. .++.+
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~~~~~ig 135 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTRPERFVG 135 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEE
Confidence 999976543333334444556778777544444 446677777653 34443
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-06 Score=84.89 Aligned_cols=104 Identities=24% Similarity=0.258 Sum_probs=77.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch------------hhhhcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG------------IEKSLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~------------~~~~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||.|.||..+|..+...|++|++||++.... ...+.+ +....+++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 479999999999999999999999999999765321 011112 22234554 4799
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
||+|++++|...+.+.-+-++..+.++++++|+....+ +....|.+.+..
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999987777755556677789999999555555 666688887743
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=87.88 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=85.3
Q ss_pred cccCCeEEeeccchH-HHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRI-GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~I-G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||+|.|||.|.+ |+.+|.+|...|++|++++.+ ..++.+.+++||+|+++++ +.++|+.
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-------------t~~l~~~~~~ADIVV~avG----~~~~i~~ 217 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-------------TRDLAAHTRQADIVVAAVG----KRNVLTA 217 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-------------CCCHHHHhhhCCEEEEcCC----CcCccCH
Confidence 589999999999999 999999999999999987632 1368899999999999998 5678887
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+.+|+|+++||++--.+. +|++.| ||-.++=.. ---.+||=-+|.-.=+..
T Consensus 218 ---~~ik~gavVIDVGin~~~----------~gkl~G---DVd~~~v~~---------~a~~iTPVPGGVGp~T~a 268 (285)
T PRK14189 218 ---DMVKPGATVIDVGMNRDD----------AGKLCG---DVDFAGVKE---------VAGYITPVPGGVGPMTIT 268 (285)
T ss_pred ---HHcCCCCEEEEccccccC----------CCCeeC---CccHHHHHh---------hceEecCCCCCchHHHHH
Confidence 568999999999975532 256666 764221111 114689976665544333
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.8e-07 Score=91.32 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=76.4
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCc------hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCc
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPD------GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~------~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gA 260 (501)
|+.||++|...|++|++||++... ......|+..+.+..+++++||+|++++|..++++.++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 789999999999999999987531 12445688888889999999999999999888888887 56899999999
Q ss_pred EEEEcCCCCccCHHHHHHHHHc
Q psy7383 261 FLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 261 ilINvaRG~vVde~aL~~aL~~ 282 (501)
++||++. ++.+.+++.|+.
T Consensus 111 IVID~ST---IsP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCT---VSPVVLYYSLEK 129 (341)
T ss_pred EEEECCC---CCHHHHHHHHHH
Confidence 9999987 566666666655
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.6e-07 Score=91.11 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=70.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhc--------------CceecCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSL--------------GLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~--------------gv~~~~sLdelL~~sDvVil~lPl 240 (501)
++|+|||+|.||..+|..|...|++|.+||+.... +..... ++....+++++++++|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 47999999999999999999999999999987432 111111 244455788899999999999995
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
..+..++ .+....+++++++|+++.|-
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeecc
Confidence 4566665 35566778999999998663
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-06 Score=91.72 Aligned_cols=117 Identities=22% Similarity=0.236 Sum_probs=84.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh------------hhhcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI------------EKSLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~------------~~~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||.|.||..||..+...|++|++||++...-. ..+.| +....++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 6799999999999999999999999999998753210 01122 234556765 579
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHcCCceEEEEecCCCCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV-NTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilI-NvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EP 297 (501)
||+||.++|...+.+..+-.+.-+.++++++|. |++.- +...+.+.++. .....++..|..-|
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl---~i~~iA~~~~~-p~r~~G~HFf~Pap 148 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSL---SITAIAAGLAR-PERVAGLHFFNPAP 148 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC---CHHHHHHhcCc-ccceEEEeccCccc
Confidence 999999999988888877677767788998877 77664 44566776643 23344666665333
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=94.67 Aligned_cols=104 Identities=15% Similarity=0.260 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhCCCEEEEECCCCCch--hhhh----cCceecCCHHHHHhc---CCEEEEeccCchhhhhcccHHHHhcC
Q psy7383 186 IGSAVALRAKAFGFNVIFYDPYLPDG--IEKS----LGLTRVYTLQDLLFQ---SDCVSLHCTLNEHNHHLINEFTIKQM 256 (501)
Q Consensus 186 IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~----~gv~~~~sLdelL~~---sDvVil~lPlt~~T~~lI~~~~l~~M 256 (501)
||+.||++|...|++|.+|||+.... +.+. .++..+.+++|+++. +|+|++++|..+.+..+| .+.+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 79999999999999999999986532 2221 146677899999874 899999999999999998 5688999
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 257 RPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 257 K~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.+|.++||++....-|...+.+.+++..+. ++|+
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~--fvda 113 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIH--FIGM 113 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCe--EEec
Confidence 999999999999999999999999999887 6664
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=86.97 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=75.9
Q ss_pred eEEeeccchHHHHHHHHHHhCC----CEEEEECCCCCch--hhhhc-CceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLPDG--IEKSL-GLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~~~--~~~~~-gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
+|+|||+|.||+.+++.|...| .+|.+|||+.... ..... ++....+..+++.++|+|++++| ..+...++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH-
Confidence 6999999999999999998888 3799999975321 11222 56555678888999999999997 33345555
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
++....++++.++|+++-| +..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3455667889999999865 57777777665
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=9e-06 Score=82.49 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=76.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-h--h--h----------hcC-------------ceecCCHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-I--E--K----------SLG-------------LTRVYTLQDL 227 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~--~--~----------~~g-------------v~~~~sLdel 227 (501)
++|+|||.|.||..+|..+...|++|++||++...- . . . ..+ +....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 579999999999999999999999999999875321 0 0 0 001 1122344 56
Q ss_pred HhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 228 LFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 228 L~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+++||+|+.++|...+.+.-+-++.-+.++++++|++...| +....|.+.+..
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~ 135 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER 135 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC
Confidence 79999999999977655555545566678999999988777 566777777753
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=82.18 Aligned_cols=114 Identities=20% Similarity=0.239 Sum_probs=86.1
Q ss_pred cccCCeEEeeccchH-HHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRI-GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~I-G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+|.|++|.|||.|.+ |+.+|+.|...|++|.+.+++. .++.+.+.++|+||.+++.. ++|.+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-------------~~l~~~l~~aDiVIsat~~~----~ii~~ 103 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-------------KNLKEHTKQADIVIVAVGKP----GLVKG 103 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-------------hhHHHHHhhCCEEEEcCCCC----ceecH
Confidence 489999999999996 8889999999999999998752 25778999999999998733 37887
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEAS 324 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea 324 (501)
+. ++++.+|||++....+| ..++++.| || +.|.. .+. ...+||=-+++..-+
T Consensus 104 ~~---~~~~~viIDla~prdvd-------~~~~~~~G---~~-d~~~~-------~~~-~~~~~~~pggvgp~t 155 (168)
T cd01080 104 DM---VKPGAVVIDVGINRVPD-------KSGGKLVG---DV-DFESA-------KEK-ASAITPVPGGVGPMT 155 (168)
T ss_pred HH---ccCCeEEEEccCCCccc-------ccCCCeeC---Cc-CHHHH-------Hhh-ccCcCCCCCcChHHH
Confidence 75 57899999999988787 56667766 44 22211 111 456777666665533
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-06 Score=86.36 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=75.2
Q ss_pred eEEeeccchHHHHHHHHHHhCCCE---EEEECCCCCch--hhhhc-CceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFN---VIFYDPYLPDG--IEKSL-GLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~---Vi~~dr~~~~~--~~~~~-gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+|||||+|+||+.+++.|...|.. |.+|||+.... ..+.. ++....+.+++++++|+|++++| ......++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 699999999999999999887753 57888865432 22223 35555688899999999999999 3445555432
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+ .++++.++|.+.-| +..+.|.+.+..+
T Consensus 81 --l-~~~~~~~vis~~ag--~~~~~l~~~~~~~ 108 (258)
T PRK06476 81 --L-RFRPGQTVISVIAA--TDRAALLEWIGHD 108 (258)
T ss_pred --h-ccCCCCEEEEECCC--CCHHHHHHHhCCC
Confidence 3 35789999998854 8888888888654
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.3e-06 Score=84.10 Aligned_cols=126 Identities=16% Similarity=0.182 Sum_probs=89.0
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||+|+|||. |.+|+.||.+|...|+.|++|..+ ..++.+.+++||+|+++++.. +++..
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-------------t~~l~~~~~~ADIVI~avg~~----~~v~~ 217 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-------------TRNLAEVARKADILVVAIGRG----HFVTK 217 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-------------CCCHHHHHhhCCEEEEecCcc----ccCCH
Confidence 589999999999 999999999999999999999421 126889999999999999843 45665
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+. +|+|+++||++--.+. +|++.| ||-..+-.. . --.+||=-+|.-.=+..-+.+
T Consensus 218 ~~---ik~GavVIDvgin~~~----------~gkl~G---DVdf~~v~~-----~----a~~iTPVPGGVGp~T~a~L~~ 272 (284)
T PRK14179 218 EF---VKEGAVVIDVGMNRDE----------NGKLIG---DVDFDEVAE-----V----ASYITPVPGGVGPMTITMLME 272 (284)
T ss_pred HH---ccCCcEEEEecceecC----------CCCeec---CccHHHHHh-----h----ccEecCCCCCchHHHHHHHHH
Confidence 44 8999999999855432 356766 764322111 0 136899877765544444444
Q ss_pred HHHHHHHHH
Q psy7383 331 MAASEIRRA 339 (501)
Q Consensus 331 ~~~~ni~~~ 339 (501)
-+++..+++
T Consensus 273 N~~~a~~~~ 281 (284)
T PRK14179 273 QTYQAALRS 281 (284)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.3e-06 Score=87.85 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=65.7
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||+|+||| .|.||+.||++|...|+.|++|+.+.. ++++++++||+|+++++... ++.+
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~-------------~l~e~~~~ADIVIsavg~~~----~v~~ 217 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR-------------DLPAVCRRADILVAAVGRPE----MVKG 217 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC-------------CHHHHHhcCCEEEEecCChh----hcch
Confidence 58999999999 999999999999999999999963211 47899999999999998543 4554
Q ss_pred HHHhcCCCCcEEEEcCCCCc
Q psy7383 251 FTIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~v 270 (501)
.. +|+|+++||++--.+
T Consensus 218 ~~---lk~GavVIDvGin~~ 234 (296)
T PRK14188 218 DW---IKPGATVIDVGINRI 234 (296)
T ss_pred he---ecCCCEEEEcCCccc
Confidence 33 899999999986543
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.2e-06 Score=88.89 Aligned_cols=130 Identities=12% Similarity=0.052 Sum_probs=85.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhh----------------cCcee--cCCHHHHHhcCCEEEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKS----------------LGLTR--VYTLQDLLFQSDCVSL 236 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~----------------~gv~~--~~sLdelL~~sDvVil 236 (501)
++|+|||+|.||..+|..+. .|++|++||+....- ...+ .+... ..+..+++++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 36999999999999997666 599999999875321 1100 11121 1235677899999999
Q ss_pred eccCchh-------hhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCC--CCCC
Q psy7383 237 HCTLNEH-------NHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVF--QGNL 305 (501)
Q Consensus 237 ~lPlt~~-------T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~--~~pL 305 (501)
++|..-+ ...+.. ++..+ +++|.++|+.|.-.+=..+.+.+.+.+..+. |..|.+.+. -+.+
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d~ 152 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYDN 152 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCcccccc
Confidence 9995411 112111 33444 7999999999998888888888887765443 466665431 1234
Q ss_pred CCCCCeEE
Q psy7383 306 KDAPNILC 313 (501)
Q Consensus 306 ~~~pNVil 313 (501)
+..|.|++
T Consensus 153 ~~p~rvv~ 160 (388)
T PRK15057 153 LHPSRIVI 160 (388)
T ss_pred cCCCEEEE
Confidence 44455544
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-05 Score=87.43 Aligned_cols=172 Identities=18% Similarity=0.210 Sum_probs=103.7
Q ss_pred CCHHHHhcCCC-CcEEEEcCccccccchhhhhhcCeEEeecCCCC--c--------hhhHHHHHHHHHHHHhhHHHHHHH
Q psy7383 82 LTKEDLEKFKT-LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYG--V--------EEVADTTLCLILNLYRRTYWLANM 150 (501)
Q Consensus 82 l~~e~l~~~p~-LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~--a--------~aVAE~alal~L~l~R~~~~~~~~ 150 (501)
.+.+.++.+.. --+|....-..|.=-++++.+++|++....-.. . .++++.+= +|-..+..+.
T Consensus 74 P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG------y~Avi~Aa~~ 147 (511)
T TIGR00561 74 PSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG------YRAIIEAAHE 147 (511)
T ss_pred CCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH------HHHHHHHHHH
Confidence 35666777644 444555554445445677888898877532111 1 22333221 1111111111
Q ss_pred HHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec--C-----
Q psy7383 151 VREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV--Y----- 222 (501)
Q Consensus 151 ~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~--~----- 222 (501)
-++++.+. ....+ .+.+.+|.|+|+|.+|...++.++.+|++|+++|++... +..+.+|.+.+ +
T Consensus 148 --lgr~~~g~----~taag--~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g 219 (511)
T TIGR00561 148 --FGRFFTGQ----ITAAG--KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEG 219 (511)
T ss_pred --hhhhcCCc----eecCC--CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccc
Confidence 11112110 01111 356789999999999999999999999999999987532 33334454321 0
Q ss_pred ----------C----------HHHHHhcCCEEEEeccC-chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 223 ----------T----------LQDLLFQSDCVSLHCTL-NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 223 ----------s----------LdelL~~sDvVil~lPl-t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+ +.+.++++|+|+.++-. ....-.++.++.++.||+|+++||++-
T Consensus 220 ~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 220 GSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred cccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 1 34557889999887721 112346889999999999999999975
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.4e-06 Score=83.89 Aligned_cols=102 Identities=15% Similarity=0.210 Sum_probs=74.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCC----CEEEEECCCCCch---hhhhc-CceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLPDG---IEKSL-GLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~~~---~~~~~-gv~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
.+|+|||+|.||+.+++.|...| .+|++|+++.... ..... ++....+.++++.++|+|++++|. .....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 46999999999999999998887 6899999864321 11122 233345788899999999999993 234444
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
+ .+....++++.+||.+.-| +..+.|.+.+.
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3 3344557788899999988 78888888664
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-06 Score=78.92 Aligned_cols=98 Identities=18% Similarity=0.274 Sum_probs=71.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc--hhhhhcC---c--eecCCHHHHHhcCCEEEEeccCchh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD--GIEKSLG---L--TRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~--~~~~~~g---v--~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
+++++++.|||.|.+|+.++..|...|++ |++++|+..+ .+...++ + ....++.+.+.++|+|+.+.|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~- 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM- 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC-
Confidence 58999999999999999999999999987 9999998643 2223331 2 233456677999999999988543
Q ss_pred hhhcccHHHHhcCCCCc-EEEEcCCCCccC
Q psy7383 244 NHHLINEFTIKQMRPGA-FLVNTARGGLVD 272 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gA-ilINvaRG~vVd 272 (501)
..+.++.++..++.. ++++++...-||
T Consensus 88 --~~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 88 --PIITEEMLKKASKKLRLVIDLAVPRDID 115 (135)
T ss_dssp --TSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred --cccCHHHHHHHHhhhhceeccccCCCCC
Confidence 378888888776654 888887654343
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=6e-06 Score=82.31 Aligned_cols=100 Identities=22% Similarity=0.267 Sum_probs=71.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCC---CEEEEECCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG---FNVIFYDPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG---~~Vi~~dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++|+|||+|.||+.+++.+...| .+|.+|||+.... .....++....+.++++.++|+|++++|.. ..+.++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~- 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLS- 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHH-
Confidence 47999999999999999999888 7899999975321 222236655567888899999999999833 3344332
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
+....+ +.++|.+.-| +..+.|.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~g--i~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAG--VTLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCC--CCHHHHHHhcC
Confidence 222233 4688888776 46667776664
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.6e-06 Score=79.97 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=72.7
Q ss_pred CCeEEeeccchHHHHHHHHHHhCC---CE-EEEECCCC-Cc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFG---FN-VIFYDPYL-PD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG---~~-Vi~~dr~~-~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
.++|+|||+|+||+.+++.+...| .+ |++++++. .. ......++....++++++.++|+|++++|.. ..+.+
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~v 82 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEEL 82 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHHH
Confidence 578999999999999999997765 33 77888753 21 2233356665668889999999999999943 33333
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+ ++.-..++ +.++|.++-| ++.+.|.+.+..+
T Consensus 83 ~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 83 L-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred H-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 3 22222334 6799999887 7777777776554
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.7e-06 Score=76.32 Aligned_cols=91 Identities=15% Similarity=0.310 Sum_probs=64.9
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhh-------------cCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKS-------------LGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~-------------~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
+|+|+|.|++|.++|..|...|.+|..|.+.... ..... ..+....+++++++++|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 6899999999999999999999999999987421 11110 12334468999999999999999944
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
. .+.++ ++....++++..+|++..|=
T Consensus 81 ~-~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 A-HREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp G-HHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred H-HHHHH-HHHhhccCCCCEEEEecCCc
Confidence 2 33333 56667788999999998873
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1e-05 Score=83.43 Aligned_cols=108 Identities=24% Similarity=0.247 Sum_probs=76.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce-----------------ecCCHHHHHhcCCEEEEec
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT-----------------RVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~-----------------~~~sLdelL~~sDvVil~l 238 (501)
++|+|||.|.||..+|..|...|++|.+||+....+..+..+.. ...+. +.+..+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 57999999999999999999999999999985422222222221 12233 5678999999999
Q ss_pred cCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceE
Q psy7383 239 TLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRA 287 (501)
Q Consensus 239 Plt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~G 287 (501)
+.. +...++ ++....++++.++|.+.-| +...+.+.+.+.+.++..
T Consensus 82 k~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~ 127 (341)
T PRK08229 82 KSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLA 127 (341)
T ss_pred cCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEE
Confidence 854 445554 4566678899999988665 444566777776655543
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.1e-06 Score=82.66 Aligned_cols=106 Identities=23% Similarity=0.296 Sum_probs=72.6
Q ss_pred CeEEeeccchHHHHHHHHHHhC--CCE-EEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--GFN-VIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G~~-Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+|||||+|.||+.+++.+... +++ +.+||++... ...+..+...+.++++++.++|+|++|+|.. ... +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~--~~~---~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN--AVE---E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH--HHH---H
Confidence 4799999999999999998865 566 4568887543 2223445555678999999999999998732 221 2
Q ss_pred HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHcCCce
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDD---DSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde---~aL~~aL~~g~I~ 286 (501)
-....|+.|.-+|.++-|.+.|. +.|.++.+++...
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 22334455666677777877764 4667777776544
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.9e-05 Score=85.18 Aligned_cols=181 Identities=18% Similarity=0.206 Sum_probs=107.7
Q ss_pred ceEEEEeccCCCCHHHHhcCCC-CcEEEEcCccccccchhhhhhcCeEEeecCCCC--c--------hhhHHHHHHHHHH
Q psy7383 71 AVGALMWHTIILTKEDLEKFKT-LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYG--V--------EEVADTTLCLILN 139 (501)
Q Consensus 71 a~~vli~~~~~l~~e~l~~~p~-LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~--a--------~aVAE~alal~L~ 139 (501)
+|.++-.. ..+.+.++.++. --+|.......|.=-++.+.+++|++....-.- + .++|+.+=
T Consensus 66 ~diilkV~--~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG----- 138 (509)
T PRK09424 66 SDIILKVN--APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG----- 138 (509)
T ss_pred CCEEEEeC--CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH-----
Confidence 45444333 245667777754 445566555555555778889998877532111 0 12233211
Q ss_pred HHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCc
Q psy7383 140 LYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 140 l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv 218 (501)
+|-+....+ .-++.+.+.. ...+ ...+.+|.|+|.|.+|...++.++.+|++|+++|++... +..+++|.
T Consensus 139 -y~Av~~aa~--~~~~~~~g~~----taaG--~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 139 -YRAVIEAAH--EFGRFFTGQI----TAAG--KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred -HHHHHHHHH--HhcccCCCce----eccC--CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 111111111 1122111100 0111 356999999999999999999999999999999987643 44555665
Q ss_pred eec--C-----------------CH--------HHHHhcCCEEEEeccCch-hhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 219 TRV--Y-----------------TL--------QDLLFQSDCVSLHCTLNE-HNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 219 ~~~--~-----------------sL--------delL~~sDvVil~lPlt~-~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+.+ . +. .+.+.++|+||.+.-... ....+|.++.++.||+|+++|+++=
T Consensus 210 ~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 210 EFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred eEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 522 1 00 111256999998875321 1234667899999999999999974
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.3e-06 Score=83.34 Aligned_cols=131 Identities=14% Similarity=0.148 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHH--HhCCCEEEE-
Q psy7383 127 EEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRA--KAFGFNVIF- 203 (501)
Q Consensus 127 ~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L--~afG~~Vi~- 203 (501)
...++|.+..++...|++. .|. ..++|+|||+|.+|+.+++.+ ...|+++++
T Consensus 61 ~~~~gy~v~~l~~~~~~~l---------~~~----------------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv 115 (213)
T PRK05472 61 KRGVGYNVEELLEFIEKIL---------GLD----------------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAA 115 (213)
T ss_pred CCCCCeeHHHHHHHHHHHh---------CCC----------------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEE
Confidence 4455688888888887763 110 235799999999999999863 467898775
Q ss_pred ECCCCCchhhhhcC--ceecCCHHHHHhc--CCEEEEeccCchh---hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHH
Q psy7383 204 YDPYLPDGIEKSLG--LTRVYTLQDLLFQ--SDCVSLHCTLNEH---NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSL 276 (501)
Q Consensus 204 ~dr~~~~~~~~~~g--v~~~~sLdelL~~--sDvVil~lPlt~~---T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL 276 (501)
+|+..........+ +....++++++++ .|+|++++|.+.. ...++......-|....+.+|+.+|.+|+.++|
T Consensus 116 ~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l 195 (213)
T PRK05472 116 FDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDL 195 (213)
T ss_pred EECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEech
Confidence 56543221111112 2223467777765 9999999997654 223333444555777889999999999999999
Q ss_pred HHHHHc
Q psy7383 277 AAALKQ 282 (501)
Q Consensus 277 ~~aL~~ 282 (501)
..+|..
T Consensus 196 ~~~l~~ 201 (213)
T PRK05472 196 TVELQT 201 (213)
T ss_pred HHHHHH
Confidence 998864
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.2e-06 Score=77.59 Aligned_cols=108 Identities=25% Similarity=0.360 Sum_probs=61.6
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEE-CCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFY-DPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~-dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
...+|+|||.|++|..+++.|...|++|..+ +|+.... .....+...+.+++|++.++|+|++++|++ ....+ -+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~v-a~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEV-AE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHH-HH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHH-HH
Confidence 4568999999999999999999999998775 5543221 122233344557889999999999999965 33333 23
Q ss_pred HHHhc--CCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 251 FTIKQ--MRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 251 ~~l~~--MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
++-.. .++|.+++-||= . ...+-|.-+-+.|-+
T Consensus 87 ~La~~~~~~~g~iVvHtSG-a-~~~~vL~p~~~~Ga~ 121 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTSG-A-LGSDVLAPARERGAI 121 (127)
T ss_dssp HHHCC--S-TT-EEEES-S-S---GGGGHHHHHTT-E
T ss_pred HHHHhccCCCCcEEEECCC-C-ChHHhhhhHHHCCCe
Confidence 34333 689999999953 2 344444444444443
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.3e-06 Score=82.97 Aligned_cols=116 Identities=14% Similarity=0.175 Sum_probs=85.1
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+|+||+|.|||.|. +|+.+|..|...|++|++++++. .++.+.+++||+|+.+++. .++|.+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------~~l~~~~~~ADIVIsAvg~----p~~i~~ 217 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------KDMASYLKDADVIVSAVGK----PGLVTK 217 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHHhhCCEEEECCCC----CcccCH
Confidence 58999999999999 99999999999999999988542 2688999999999999973 457877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~ 329 (501)
+. +|+|+++||++--.. .+|++.| ||-..+=.. . --.+||=-+|.-.-+...+.
T Consensus 218 ~~---vk~gavVIDvGi~~~----------~~gkl~G---Dvd~~~~~~-----~----a~~iTPVPGGVGp~T~a~L~ 271 (286)
T PRK14175 218 DV---VKEGAVIIDVGNTPD----------ENGKLKG---DVDYDAVKE-----I----AGAITPVPGGVGPLTITMVL 271 (286)
T ss_pred HH---cCCCcEEEEcCCCcC----------CCCCeec---CccHHHHHh-----h----ccCcCCCCCCCHHHHHHHHH
Confidence 64 699999999997542 1356665 663221100 1 13589987776654444333
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=81.26 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=81.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCC----CEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
++|||||+|+||++|+..|...| .+|++.+|+... ...+.+++....+.+++..++|+|+|++. |+ .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 57999999999999999999988 689999998643 25556777655577889999999999987 32 22
Q ss_pred HHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 250 EFTIKQMR---PGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 250 ~~~l~~MK---~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
.+.++.+| ++.+||.++-| |..+.|.+.|.+.++
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~v 112 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRV 112 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCce
Confidence 45666666 79999999999 888999888764443
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.2e-06 Score=76.57 Aligned_cols=96 Identities=23% Similarity=0.315 Sum_probs=68.1
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCce---e-----------------------cCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLT---R-----------------------VYT 223 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~---~-----------------------~~s 223 (501)
..+...+|.|+|.|+.|+..++.|+++|++|..+|.+.... .....+.. . ...
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 45788999999999999999999999999999999764311 11111111 1 113
Q ss_pred HHHHHhcCCEEEEecc-CchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 224 LQDLLFQSDCVSLHCT-LNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 224 LdelL~~sDvVil~lP-lt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
|.+.++.+|+|+.++- .....-.+|.++.++.||+++++||++
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 6778999999997554 355677899999999999999999996
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=65.84 Aligned_cols=66 Identities=21% Similarity=0.344 Sum_probs=56.6
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhC-CCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAF-GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~af-G~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+++++++|+|+|.+|+.+++.+..+ +.+|.+||+ |+|+.+.+. .+.+.+
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-------------------------di~i~~~~~----~~~~~~ 70 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-------------------------DILVTATPA----GVPVLE 70 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------CEEEEcCCC----CCCchH
Confidence 37899999999999999999999998 678999987 999988763 355666
Q ss_pred HHHhcCCCCcEEEEcC
Q psy7383 251 FTIKQMRPGAFLVNTA 266 (501)
Q Consensus 251 ~~l~~MK~gAilINva 266 (501)
+.++.|+++.++++++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 6788999999999874
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.9e-05 Score=73.07 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=73.0
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc------hhhh-------------------hcCceecCCHHHHHhcC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD------GIEK-------------------SLGLTRVYTLQDLLFQS 231 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~------~~~~-------------------~~gv~~~~sLdelL~~s 231 (501)
+|+|||.|.||+.+|..+...|++|..||++... ...+ ...+....+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999987531 0000 01133456788888 99
Q ss_pred CEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 232 DvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
|+|+=++|.+-+.+.-+-++.-+.++++++|...+.+ +....|.+.+.
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~ 127 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS 127 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC
Confidence 9999999988888887778888889999998776655 66666776664
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.3e-05 Score=76.45 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=62.7
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCch--hhhh-------cCc--e-ecCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKS-------LGL--T-RVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~-------~gv--~-~~~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+||| .|.||+.+++.|...|.+|++|+|+.... .... .++ . ...+..+.+.++|+|++++|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 4799997 99999999999999999999999875321 1110 111 1 1236678899999999999944
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
....++ ++.-..++ +.++|++.-|-
T Consensus 80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi 104 (219)
T TIGR01915 80 HVLKTL-ESLRDELS-GKLVISPVVPL 104 (219)
T ss_pred HHHHHH-HHHHHhcc-CCEEEEeccCc
Confidence 233333 22223344 58999998773
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.4e-05 Score=85.62 Aligned_cols=99 Identities=20% Similarity=0.288 Sum_probs=73.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCch--hhhhcCceec--CCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPDG--IEKSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~~--~~~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
.+.+++|+|||+|.||+.+++.|+.+| .+|+++|++.... ..+..+...+ .++.+++.++|+|+.+++ .+..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence 488999999999999999999999999 7899999986432 3334443222 356678899999999865 4567
Q ss_pred cccHHHHhcCC----CCcEEEEcCCCCccCH
Q psy7383 247 LINEFTIKQMR----PGAFLVNTARGGLVDD 273 (501)
Q Consensus 247 lI~~~~l~~MK----~gAilINvaRG~vVde 273 (501)
+++.+.++.+. ...++||.+...=||.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 88888887652 2458888886443443
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.4e-05 Score=75.37 Aligned_cols=90 Identities=23% Similarity=0.290 Sum_probs=66.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh---hhhcCce-ecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI---EKSLGLT-RVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~---~~~~gv~-~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
++++|+|.|+||+.+|+++...|++|++-+++.++.. .+.++.. ...+.++..+.+|+|++.+|... ...+ .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a-~~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA-IPDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH-HHhH-HHH
Confidence 5799999999999999999999999999977654322 2222221 12478899999999999999653 2222 255
Q ss_pred HHhcCCCCcEEEEcCCC
Q psy7383 252 TIKQMRPGAFLVNTARG 268 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG 268 (501)
....+. |.++|++.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 555565 8999998764
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.6e-05 Score=74.80 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=76.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--------------hh---hh----hcCceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--------------GI---EK----SLGLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--------------~~---~~----~~gv~~~~sLdelL~~sDvV 234 (501)
++|+|+|+|.+|..+|..|...|++|++||..... +. .+ ...+....+.++.+.+||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 58999999999999999999999999999965321 00 00 11233445678889999999
Q ss_pred EEeccCchhhhh------cc--cHHHHhcCCCCcEEEEcCCCCccCHHHH-HHHHHcCCceEEEEe-cCCCCCCCCCC--
Q psy7383 235 SLHCTLNEHNHH------LI--NEFTIKQMRPGAFLVNTARGGLVDDDSL-AAALKQGRIRAAALD-VHESEPYNVFQ-- 302 (501)
Q Consensus 235 il~lPlt~~T~~------lI--~~~~l~~MK~gAilINvaRG~vVde~aL-~~aL~~g~I~GAaLD-Vfe~EPl~~~~-- 302 (501)
++|+|...+..+ +. -+...+.++++.++|.-|.-.+=..+.+ ...|++..-.+.-++ +|-+|=+.+..
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999984222222 21 2456677899999999999877555533 344444321100111 25566554311
Q ss_pred CCCCCCCCeEE
Q psy7383 303 GNLKDAPNILC 313 (501)
Q Consensus 303 ~pL~~~pNVil 313 (501)
..+...++||+
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 23455666664
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.2e-05 Score=75.47 Aligned_cols=98 Identities=16% Similarity=0.253 Sum_probs=68.9
Q ss_pred CCeEEeeccchHHHHHHHHHHhCC----CEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.++|+|||+|+||+++++.|...+ .+|++++++... .+.....+..+++.+||+|++++|. .+++.++.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl~- 75 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVKP-DLAGKVLL- 75 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeCH-HHHHHHHH-
Confidence 468999999999999999998765 359999886432 2334445777888999999999883 34555553
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+....++++ .+|.+.-| ++.+.+.+.+..
T Consensus 76 ~i~~~l~~~-~iIS~~aG--i~~~~l~~~~~~ 104 (260)
T PTZ00431 76 EIKPYLGSK-LLISICGG--LNLKTLEEMVGV 104 (260)
T ss_pred HHHhhccCC-EEEEEeCC--ccHHHHHHHcCC
Confidence 333445544 56777666 667777666543
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=75.29 Aligned_cols=125 Identities=20% Similarity=0.230 Sum_probs=88.0
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||+|.|||-| .+|+.+|.+|...|+.|++++.+. .++.+.+++||+|+.++. ..+++..
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-------------~~l~~~~~~ADIvV~AvG----~p~~i~~ 216 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-------------KDLSFYTQNADIVCVGVG----KPDLIKA 216 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc-------------HHHHHHHHhCCEEEEecC----CCCcCCH
Confidence 5899999999999 999999999999999999885321 257889999999999985 4567887
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+.+ |+|+++||++--.+ .+|++.| ||-..+ .. +. --.+||=-+|.-.=+..-+.+
T Consensus 217 ~~v---k~GavVIDvGi~~~----------~~gklvG---Dvd~e~-v~----~~----a~~iTPVPGGVGpvT~a~L~~ 271 (285)
T PRK14191 217 SMV---KKGAVVVDIGINRL----------NDGRLVG---DVDFEN-VA----PK----ASFITPVPGGVGPMTIVSLLE 271 (285)
T ss_pred HHc---CCCcEEEEeecccc----------cCCceec---cccHHH-Hh----hh----ccEEecCCCCChHHHHHHHHH
Confidence 765 99999999996543 1356666 663211 10 01 135899877765544443434
Q ss_pred HHHHHHHH
Q psy7383 331 MAASEIRR 338 (501)
Q Consensus 331 ~~~~ni~~ 338 (501)
.+++..++
T Consensus 272 N~~~a~~~ 279 (285)
T PRK14191 272 NTLIAAEK 279 (285)
T ss_pred HHHHHHHH
Confidence 33333333
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.8e-05 Score=75.56 Aligned_cols=118 Identities=17% Similarity=0.145 Sum_probs=78.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCce-----------ecCCHHHHHhcCCEEEEeccCchh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLT-----------RVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~-----------~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
++|+|||.|.||+.+|..|...|.+|.+++++... +.....+.. ...+.+++ ..+|+|+++++.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 36999999999999999999999999999985432 112222321 12345555 8999999999843 4
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEE--EecCCCCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAA--LDVHESEP 297 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAa--LDVfe~EP 297 (501)
+..++ +.....+.+++.+|.+.-| +-.++.+.+.+...++.+.. ..++..+|
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p 132 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGP 132 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCC
Confidence 44444 3444556778889988887 33356666666665665433 23344455
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.2e-05 Score=76.68 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=74.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce-------------ecCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT-------------RVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~-------------~~~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||.|.||..+|..|...|.+|.+|+|....+..+..++. ...+.+++...+|+|+++++..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~- 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY- 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-
Confidence 47999999999999999999999999999982111111222211 1234566678999999999843
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceE
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRA 287 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~G 287 (501)
++..++ ++....++++.++|.+.-| +-.++.|.+.+.+.++.+
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~ 122 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLG 122 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEE
Confidence 344443 3444556788899988776 344677777776666553
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00015 Score=71.55 Aligned_cols=152 Identities=21% Similarity=0.140 Sum_probs=102.6
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCE---EEEECCC----CCch---------hhhhcCceec-CCHHHHHhcCCEE
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFN---VIFYDPY----LPDG---------IEKSLGLTRV-YTLQDLLFQSDCV 234 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~---Vi~~dr~----~~~~---------~~~~~gv~~~-~sLdelL~~sDvV 234 (501)
.++++++.|+|.|.+|+.+|+.|...|++ |+++||+ .... ..+..+.... .++.+.+.++|+|
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvl 101 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVF 101 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEE
Confidence 47889999999999999999999999984 9999998 2211 1222211111 2677888999999
Q ss_pred EEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC-ceEEEEecCCCCCCCCCCCCCCCCCCeEE
Q psy7383 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR-IRAAALDVHESEPYNVFQGNLKDAPNILC 313 (501)
Q Consensus 235 il~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~-I~GAaLDVfe~EPl~~~~~pL~~~pNVil 313 (501)
|.+.+ .++++.+.++.|+++.++...+.. ..|.-+.++.+.|- |.. |= .+ --..+.-|+++
T Consensus 102 IgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a---~G--~~------~~~~Q~nn~~~ 163 (226)
T cd05311 102 IGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVA---TG--RS------DFPNQVNNVLG 163 (226)
T ss_pred EeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEE---eC--CC------CCccccceeee
Confidence 98875 588999999999999999998843 34444444444433 232 21 11 12347789999
Q ss_pred ecCCCCC-----cHHHHHHHHHHHHHHHHHHHh
Q psy7383 314 TPHAAFY-----SEASCTELREMAASEIRRAIV 341 (501)
Q Consensus 314 TPHiAg~-----T~ea~~~~~~~~~~ni~~~l~ 341 (501)
-|=++-- ...-.++|...+++.|..+..
T Consensus 164 fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 164 FPGIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred cchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 9987632 222235666667777766553
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.5e-05 Score=78.56 Aligned_cols=94 Identities=21% Similarity=0.286 Sum_probs=66.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCc--hhhhhcCceec--CCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPD--GIEKSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~--~~~~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
+.+++|+|||.|.||+.+++.|+..| .+|+++||+... .....++.... .++.+.+.++|+|+.+++... ...+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~-~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH-YAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc-hHHH
Confidence 68999999999999999999999876 579999987643 34455555322 245677889999999988543 2222
Q ss_pred ccHHHHhcC-CCCcEEEEcCCC
Q psy7383 248 INEFTIKQM-RPGAFLVNTARG 268 (501)
Q Consensus 248 I~~~~l~~M-K~gAilINvaRG 268 (501)
+ +..++.. +++.+|||++..
T Consensus 255 ~-~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCC
Confidence 2 3333333 357788888754
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >KOG2380|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.2e-05 Score=81.21 Aligned_cols=108 Identities=17% Similarity=0.263 Sum_probs=85.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHh-cCCEEEEeccCchhhhhcccHHHH
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLF-QSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~-~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
-++|||||||++|+-+|..+...|+.|+++||..-.......|......+.++++ .+|+|++|+.. ..+..++-.--+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence 4689999999999999999999999999999987556666778777778888875 68999998752 234555544456
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+++|.|++|+++-.-.....+++.+-|-+.
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkd 160 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKD 160 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccc
Confidence 779999999999887766777777766553
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.8e-05 Score=79.05 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=74.0
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCc------hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCc
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPD------GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~------~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gA 260 (501)
|..+|.+|...|++|++||++... ......|+....+..+++.+||+|++++|....++.++ .+....+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 689999999999999999987531 12334677766788899999999999999665477777 46778899999
Q ss_pred EEEEcCCCCccCH-HHHHHHHH
Q psy7383 261 FLVNTARGGLVDD-DSLAAALK 281 (501)
Q Consensus 261 ilINvaRG~vVde-~aL~~aL~ 281 (501)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999876655 56666664
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=4e-05 Score=78.36 Aligned_cols=94 Identities=26% Similarity=0.354 Sum_probs=74.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
-|.||||+|||||.=|.+=|..|+-.|.+|++--|.-.. ..+++.|++ +.+.+|+.+++|+|.+.+|..- ...++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~-q~~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQ-QKEVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhh-HHHHHH
Confidence 389999999999999999999999999998876555432 345567776 5699999999999999999543 355666
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy7383 250 EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG 268 (501)
++.-..||.|+.| -.+.|
T Consensus 93 ~~I~p~Lk~G~aL-~FaHG 110 (338)
T COG0059 93 KEIAPNLKEGAAL-GFAHG 110 (338)
T ss_pred HHhhhhhcCCceE-Eeccc
Confidence 6888889999854 44554
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.7e-05 Score=82.47 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=69.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhhhcCcee--cCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEKSLGLTR--VYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~~~gv~~--~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
.+.+++|+|||.|.||+.+++.|+..|+ +|++++++... .....++... ..++.+.+.++|+|+.+++. ...
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s---~~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA---PHP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC---CCc
Confidence 3789999999999999999999999998 79999997543 2344444322 23456678899999998763 356
Q ss_pred cccHHHHhcC-----CCCcEEEEcCCC
Q psy7383 247 LINEFTIKQM-----RPGAFLVNTARG 268 (501)
Q Consensus 247 lI~~~~l~~M-----K~gAilINvaRG 268 (501)
++..+.++.+ +...++||++-.
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 6777777654 345788888754
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.4e-05 Score=75.96 Aligned_cols=124 Identities=17% Similarity=0.217 Sum_probs=87.0
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||.+. +|+.+|.+|...|+.|++++.+. .++++.++++|+|+.++.- .++|..
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T-------------~~l~~~~~~ADIvi~avG~----p~~v~~ 218 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT-------------KNLRHHVRNADLLVVAVGK----PGFIPG 218 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC-------------CCHHHHHhhCCEEEEcCCC----cccccH
Confidence 58999999999999 99999999999999999987531 2688999999999999842 246665
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+.+|+|+++||++--.+. +|++.| ||-.++=. .. --.+||=-+|...-+..-+.+
T Consensus 219 ---~~vk~gavVIDvGin~~~----------~gk~~G---Dvd~~~~~-----~~----a~~itPvPGGVGp~T~a~L~~ 273 (285)
T PRK10792 219 ---EWIKPGAIVIDVGINRLE----------DGKLVG---DVEFETAA-----ER----ASWITPVPGGVGPMTVATLLE 273 (285)
T ss_pred ---HHcCCCcEEEEccccccc----------CCCcCC---CcCHHHHH-----hh----ccCcCCCCCCChHHHHHHHHH
Confidence 457999999999954321 245554 55211100 01 246888878877655554444
Q ss_pred HHHHHHH
Q psy7383 331 MAASEIR 337 (501)
Q Consensus 331 ~~~~ni~ 337 (501)
.+++..+
T Consensus 274 N~~~a~~ 280 (285)
T PRK10792 274 NTLQACE 280 (285)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.8e-05 Score=71.04 Aligned_cols=122 Identities=18% Similarity=0.246 Sum_probs=76.7
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.++.+|...|+.|..++.+. .++++.+++||+|+.++. ..++|..
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-------------~~l~~~~~~ADIVVsa~G----~~~~i~~ 95 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-------------KNLQEITRRADIVVSAVG----KPNLIKA 95 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-------------SSHHHHHTTSSEEEE-SS----STT-B-G
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-------------CcccceeeeccEEeeeec----ccccccc
Confidence 59999999999996 99999999999999999887432 368899999999999986 3566765
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+ .+|+|+++||++.-.+ -.++++.| ||...+ . ...--.+||=-+|.-.-+. .
T Consensus 96 ~---~ik~gavVIDvG~~~~---------~~~~~~~G---Dv~~~~-~--------~~~a~~itPvPgGVGplT~----a 147 (160)
T PF02882_consen 96 D---WIKPGAVVIDVGINYV---------PGDGKLVG---DVDFES-V--------KEKASAITPVPGGVGPLTV----A 147 (160)
T ss_dssp G---GS-TTEEEEE--CEEE---------TTTTEEEE---SB-HHH-H--------HTTCSEEE-SSSSCHHHHH----H
T ss_pred c---cccCCcEEEecCCccc---------cccceeee---cccHHH-h--------hccceEEeeCCCCccHHHH----H
Confidence 4 5699999999988654 33455554 664211 1 1112367997676655332 3
Q ss_pred HHHHHHHH
Q psy7383 331 MAASEIRR 338 (501)
Q Consensus 331 ~~~~ni~~ 338 (501)
+.++|+.+
T Consensus 148 ~L~~N~v~ 155 (160)
T PF02882_consen 148 MLMKNLVK 155 (160)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34455443
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=97.80 E-value=6e-05 Score=78.64 Aligned_cols=86 Identities=24% Similarity=0.207 Sum_probs=62.9
Q ss_pred EEeeccchHHHHHHHHHHh-CCCEEEEECCCCCc---hhhhhcC------------------ceecCCHHHHHhcCCEEE
Q psy7383 178 LGIVGLGRIGSAVALRAKA-FGFNVIFYDPYLPD---GIEKSLG------------------LTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~a-fG~~Vi~~dr~~~~---~~~~~~g------------------v~~~~sLdelL~~sDvVi 235 (501)
|||+|||+||+.+++.+.. -+++|++.+....+ ..+..++ +....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999864 46888775432221 1122122 222336899999999999
Q ss_pred EeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 236 LHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 236 l~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
.|.| .+.++.+++.+.+|+.+++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 8865 668899999999999999998653
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00025 Score=72.49 Aligned_cols=113 Identities=20% Similarity=0.257 Sum_probs=83.8
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...++.|+.++.+ ..++.+.+++||+|+.++. ..++|+.
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~-------------t~~l~~~~~~ADIvI~AvG----~p~~i~~ 217 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK-------------TKNLAELTKQADILIVAVG----KPKLITA 217 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC-------------chhHHHHHHhCCEEEEecC----CCCcCCH
Confidence 58999999999876 6999999999999999988632 1268899999999999985 3468888
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+.+ |+|+++||++.-.+. +|++.| ||-..+= .. ---.+||.-+|.-.-+..
T Consensus 218 ~~i---k~gavVIDvGi~~~~----------~gkl~G---Dvd~e~v--------~~-~a~~iTPVPGGVGpvT~a 268 (284)
T PRK14190 218 DMV---KEGAVVIDVGVNRLE----------NGKLCG---DVDFDNV--------KE-KASYITPVPGGVGPMTIT 268 (284)
T ss_pred HHc---CCCCEEEEeeccccC----------CCCeec---cCcHHHH--------hh-hceEecCCCCCChHHHHH
Confidence 775 899999999976532 356666 7632111 01 124799987776554433
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.8e-05 Score=83.77 Aligned_cols=95 Identities=9% Similarity=0.170 Sum_probs=70.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhc-Cc--e--ecCCHHHHHhcCCEEEEeccCchh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSL-GL--T--RVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~-gv--~--~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
++.+++|+|||.|.||+.+++.|...|+ +|++++|+.... +...+ +. . ...++.+++.++|+|+.+++ .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 3789999999999999999999999997 699999986432 22222 22 1 22356678999999999865 4
Q ss_pred hhhcccHHHHhcCCCC-------cEEEEcCCCC
Q psy7383 244 NHHLINEFTIKQMRPG-------AFLVNTARGG 269 (501)
Q Consensus 244 T~~lI~~~~l~~MK~g-------AilINvaRG~ 269 (501)
...+|.++.++.|+++ -+|||.+=..
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 5678888888887432 4788887554
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0001 Score=76.05 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=63.0
Q ss_pred ccCCeEEeeccchHHHHHHHHHHh-CC-CEEEEECCCCCc--hhhhh---cC--ceecCCHHHHHhcCCEEEEeccCchh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKA-FG-FNVIFYDPYLPD--GIEKS---LG--LTRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~a-fG-~~Vi~~dr~~~~--~~~~~---~g--v~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
...++|+|||+|.+|+.+++.+.. ++ .+|.+|||+... .+... .+ +..+.++++++.+||+|+++.+.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~-- 200 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST-- 200 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence 356899999999999999986654 45 689999998643 22222 13 445568899999999997776643
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.-+|.. +.+|+|+++.-++.
T Consensus 201 -~pvl~~---~~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 -EPLVRG---EWLKPGTHLDLVGN 220 (314)
T ss_pred -CCEecH---HHcCCCCEEEeeCC
Confidence 566665 34699995444443
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=75.00 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=65.0
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||++.|||.|. .|+.+|..|...|++|++++++ ..++.+.++++|+||.+++ . .++|..
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~-------------t~~L~~~~~~aDIvI~AtG-~---~~~v~~ 218 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR-------------TQNLPELVKQADIIVGAVG-K---PELIKK 218 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC-------------chhHHHHhccCCEEEEccC-C---CCcCCH
Confidence 58999999999998 9999999999999999999862 1257788899999999996 2 236776
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~ 269 (501)
+. +|+|+++||++-..
T Consensus 219 ~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 219 DW---IKQGAVVVDAGFHP 234 (283)
T ss_pred HH---cCCCCEEEEEEEee
Confidence 54 79999999998543
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.9e-05 Score=75.59 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=66.9
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++|++|.|||.+ ..|+.+|.+|..+|+.|..++.+. .++.+.+++||+|+.+++.. +++.+
T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t-------------~~L~~~~~~ADIvI~Avgk~----~lv~~ 211 (279)
T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT-------------ENLKAELRQADILVSAAGKA----GFITP 211 (279)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-------------hHHHHHHhhCCEEEECCCcc----cccCH
Confidence 5899999999999 999999999999999999887431 26889999999999999622 77888
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~ 269 (501)
+.+ |+|+++||++-..
T Consensus 212 ~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 212 DMV---KPGATVIDVGINQ 227 (279)
T ss_pred HHc---CCCcEEEEeeccc
Confidence 774 9999999998654
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00022 Score=69.20 Aligned_cols=90 Identities=22% Similarity=0.192 Sum_probs=64.9
Q ss_pred ccccCCeEEeeccchH-HHHHHHHHHhCCCEEEEECCCCCchhhh--hcCceec--CC----HHHHHhcCCEEEEeccCc
Q psy7383 171 ARIRGDTLGIVGLGRI-GSAVALRAKAFGFNVIFYDPYLPDGIEK--SLGLTRV--YT----LQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 171 ~~L~gktVGIVGlG~I-G~~iA~~L~afG~~Vi~~dr~~~~~~~~--~~gv~~~--~s----LdelL~~sDvVil~lPlt 241 (501)
.+++||++.|||-+.| |+.+|.+|...|+.|+.+|.+......+ ...-... .+ +.+.+++||+||.+++-
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~- 136 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS- 136 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC-
Confidence 4699999999999875 8999999999999999997432100000 0000000 12 77899999999999983
Q ss_pred hhhhhc-ccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHL-INEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~l-I~~~~l~~MK~gAilINvaR 267 (501)
.++ |..+. .|+|+++||++-
T Consensus 137 ---~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 137 ---PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred ---CCCccCHHH---cCCCcEEEEcCC
Confidence 355 77655 589999999984
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=74.96 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=81.6
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||.+. +|+.+|..|...|+.|++++.+ ..++.+.+++||+|+.++-- .++|..
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~-------------T~~l~~~~~~ADIvv~AvG~----p~~i~~ 223 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF-------------TDDLKKYTLDADILVVATGV----KHLIKA 223 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc-------------CCCHHHHHhhCCEEEEccCC----ccccCH
Confidence 58999999999999 9999999999999999998742 12688899999999997652 357766
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+ .+|+|+++||++--.+ .|++.| ||-..+- .. .--.+||=-+|.-.-+..
T Consensus 224 ~---~vk~gavVIDvGin~~-----------~gkl~G---Dvd~~~~--------~~-~a~~iTPVPGGVGp~T~a 273 (287)
T PRK14176 224 D---MVKEGAVIFDVGITKE-----------EDKVYG---DVDFENV--------IK-KASLITPVPGGVGPLTIA 273 (287)
T ss_pred H---HcCCCcEEEEeccccc-----------CCCccC---CcCHHHH--------Hh-hceEcCCCCCCChHHHHH
Confidence 5 5789999999986421 356665 5531111 00 124689987776654433
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00033 Score=64.59 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=65.4
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||+|.|+|-+. +|+.+|.+|...|++|..++.+. .++++.+++||+|+.++... ++|+.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-------------~~l~~~v~~ADIVvsAtg~~----~~i~~ 87 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-------------IQLQSKVHDADVVVVGSPKP----EKVPT 87 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEEecCCC----CccCH
Confidence 58999999999875 58999999999999999987532 26888999999999998743 66876
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~ 269 (501)
+. +|+|+++||++...
T Consensus 88 ~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 88 EW---IKPGATVINCSPTK 103 (140)
T ss_pred HH---cCCCCEEEEcCCCc
Confidence 55 78999999998754
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.1e-05 Score=77.38 Aligned_cols=98 Identities=20% Similarity=0.346 Sum_probs=75.5
Q ss_pred ccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCce--ec----CCHHHHHhcCCEEEEeccC
Q psy7383 169 GCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLT--RV----YTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 169 g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~--~~----~sLdelL~~sDvVil~lPl 240 (501)
|...+...+|.|||.|-+|..-|+.+..+|.+|...|.+.++ .....++.+ .. ..+++.+.++|+||-.+--
T Consensus 162 GvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLI 241 (371)
T COG0686 162 GVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLI 241 (371)
T ss_pred CCCCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEe
Confidence 344577788999999999999999999999999999987432 222223322 11 2468889999999987643
Q ss_pred -chhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 241 -NEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 241 -t~~T~~lI~~~~l~~MK~gAilINva 266 (501)
..+.-.++.++.+++||||+++||++
T Consensus 242 pgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 242 PGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred cCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 33456788899999999999999995
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0001 Score=74.71 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=62.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCch--hhhhcC----ceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPDG--IEKSLG----LTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~~--~~~~~g----v~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
.+.++++.|+|.|.+|+.++..|..+| .+|++++|+.... ...... +....++.+.+.++|+||.++|..-..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence 378899999999999999999999999 7899999985432 222221 111013456778999999999964321
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaR 267 (501)
..-...-.+..++++.+++++.-
T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY 222 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIY 222 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEeec
Confidence 10000111234566777777754
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00078 Score=68.87 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=85.0
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...|+.|+.+..+. .++.+.+++||+|+.++. -.++|+.
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T-------------~~l~~~~~~ADIvI~AvG----~p~~i~~ 215 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT-------------RNLKQLTKEADILVVAVG----VPHFIGA 215 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC-------------CCHHHHHhhCCEEEEccC----CcCccCH
Confidence 58999999999886 59999999999999999886431 268899999999999987 3467877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+. +|+|+++||++--.+. +|++.| ||-.++=.. .--.+||=-+|.-.-+..-+.+
T Consensus 216 ~~---vk~GavVIDvGin~~~----------~gkl~G---DVd~~~v~~---------~a~~iTPVPGGVGp~T~a~L~~ 270 (282)
T PRK14169 216 DA---VKPGAVVIDVGISRGA----------DGKLLG---DVDEAAVAP---------IASAITPVPGGVGPMTIASLMA 270 (282)
T ss_pred HH---cCCCcEEEEeeccccC----------CCCeee---cCcHHHHHh---------hccEecCCCCCcHHHHHHHHHH
Confidence 64 6899999999864431 356666 764222111 1137899777765544333333
Q ss_pred HH
Q psy7383 331 MA 332 (501)
Q Consensus 331 ~~ 332 (501)
-+
T Consensus 271 N~ 272 (282)
T PRK14169 271 QT 272 (282)
T ss_pred HH
Confidence 33
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=72.46 Aligned_cols=137 Identities=12% Similarity=0.155 Sum_probs=88.3
Q ss_pred CeEEeeccchHHHHHHHHHHhC--CCEEEEECCCCCc--------------hhhh---h-cC--ceecCCHHHHHhcCCE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--GFNVIFYDPYLPD--------------GIEK---S-LG--LTRVYTLQDLLFQSDC 233 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G~~Vi~~dr~~~~--------------~~~~---~-~g--v~~~~sLdelL~~sDv 233 (501)
++|+|||+|.+|..+|..|... |++|++||..... .... . .+ .....+.++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999866 6899999965421 0000 0 01 2333456778999999
Q ss_pred EEEeccCch-----------hhhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe-cCCCCCCC
Q psy7383 234 VSLHCTLNE-----------HNHHLI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD-VHESEPYN 299 (501)
Q Consensus 234 Vil~lPlt~-----------~T~~lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD-Vfe~EPl~ 299 (501)
+++|+|.-. +...+. -++.-+.++++.++|.-|.-.+=..+.+...|.+.. .|.-.. +|-.|=+.
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~ 160 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA 160 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence 999996211 222332 245666789999999998877766677777777531 110011 25666664
Q ss_pred CC--CCCCCCCCCeEE
Q psy7383 300 VF--QGNLKDAPNILC 313 (501)
Q Consensus 300 ~~--~~pL~~~pNVil 313 (501)
+. -+.+...|+||+
T Consensus 161 ~G~a~~d~~~p~riVi 176 (473)
T PLN02353 161 EGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCcccccCCCCEEEE
Confidence 41 235666677764
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0012 Score=69.96 Aligned_cols=155 Identities=15% Similarity=0.236 Sum_probs=116.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhh----cCceecCCHHHH---HhcCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKS----LGLTRVYTLQDL---LFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~----~gv~~~~sLdel---L~~sDvVil~lPlt~~T~~ 246 (501)
..||+||+|-||+.+|......|++|.+|||+..+ +..+. ..+...++++|+ |+.---|++++-...-...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 46899999999999999999999999999998753 22222 134456688887 5677788888875422233
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+| ++++..|-+|-++|+-+....-|+..-.++|.+..|...+.-|.-.|--.. ..|-+ +-|-+.++++
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~-~GPSi----------MpGG~~eay~ 151 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGAR-HGPSI----------MPGGQKEAYE 151 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccc-cCCCc----------CCCCCHHHHH
Confidence 44 578899999999999999999999999999999999988888987664211 12221 3467888888
Q ss_pred HHHHHHHHHHHHHHhCC
Q psy7383 327 ELREMAASEIRRAIVGR 343 (501)
Q Consensus 327 ~~~~~~~~ni~~~l~G~ 343 (501)
.+..+ ++.|.+-..|+
T Consensus 152 ~v~pi-l~~IaAk~~g~ 167 (473)
T COG0362 152 LVAPI-LTKIAAKVDGE 167 (473)
T ss_pred HHHHH-HHHHHhhcCCC
Confidence 77654 55666666666
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00031 Score=70.80 Aligned_cols=109 Identities=16% Similarity=0.225 Sum_probs=74.2
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhc---CceecCCHHHH-HhcCCEEEEeccCc--hhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSL---GLTRVYTLQDL-LFQSDCVSLHCTLN--EHN 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~---gv~~~~sLdel-L~~sDvVil~lPlt--~~T 244 (501)
..++++.|+|.|.+|+.++..|...|++|.++||+..+ ...+.. +.....++++. +.++|+|+.++|.. ++.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 46789999999999999999999999999999987532 111111 21122244443 45899999999964 222
Q ss_pred hh-cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 245 HH-LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 245 ~~-lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
.. .++ +..++++.+++|+.-... ++ .|++..++..+.
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~G~~ 232 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSLGTK 232 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHCCCe
Confidence 11 222 345788999999977654 33 577777766554
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.001 Score=68.53 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=90.0
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...|+.|+.++.+ ..++++.+++||+|+.++.- .++|..
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~-------------T~nl~~~~~~ADIvv~AvGk----~~~i~~ 226 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR-------------TPDPESIVREADIVIAAAGQ----AMMIKG 226 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEcCCC----cCccCH
Confidence 58999999999986 5999999999999999998643 12688999999999999863 378877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~ 329 (501)
+. .|+|+++||++--.+-+. ...+| ++.| ||-.++=. ..--.+||=-+|.-.=+..-+.
T Consensus 227 ~~---vk~gavVIDvGin~~~~~-----~~~~g~kl~G---Dvd~e~v~---------~~a~~iTPVPGGVGp~T~a~L~ 286 (299)
T PLN02516 227 DW---IKPGAAVIDVGTNAVSDP-----SKKSGYRLVG---DVDFAEVS---------KVAGWITPVPGGVGPMTVAMLL 286 (299)
T ss_pred HH---cCCCCEEEEeeccccCcc-----cccCCCceEc---CcChHHhh---------hhceEecCCCCCchHHHHHHHH
Confidence 55 689999999986442221 11123 4544 76422111 0113589987776655544444
Q ss_pred HHHHHHHHHHH
Q psy7383 330 EMAASEIRRAI 340 (501)
Q Consensus 330 ~~~~~ni~~~l 340 (501)
+-+++..++++
T Consensus 287 ~N~v~a~~~~~ 297 (299)
T PLN02516 287 KNTVDGAKRVF 297 (299)
T ss_pred HHHHHHHHHHh
Confidence 44554445544
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0003 Score=74.38 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=67.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCC-------CEEEEECCCCCc-------hhh-------------hhcCceecCCHHH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFG-------FNVIFYDPYLPD-------GIE-------------KSLGLTRVYTLQD 226 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG-------~~Vi~~dr~~~~-------~~~-------------~~~gv~~~~sLde 226 (501)
..++|+|||.|..|.++|..|...| .+|..|.++... ... ...++....++++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 4468999999999999999998665 899999876421 010 0112344568889
Q ss_pred HHhcCCEEEEeccCchhhhhcccHHHHh--cCCCCcEEEEcCCCCccC
Q psy7383 227 LLFQSDCVSLHCTLNEHNHHLINEFTIK--QMRPGAFLVNTARGGLVD 272 (501)
Q Consensus 227 lL~~sDvVil~lPlt~~T~~lI~~~~l~--~MK~gAilINvaRG~vVd 272 (501)
+++++|+|++++|.. ..+.++ ++.-. .+++++++|+++-|=-.+
T Consensus 90 av~~aDiIvlAVPsq-~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 90 AVEDADLLIFVIPHQ-FLESVL-SQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHhcCCEEEEEcChH-HHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence 999999999999932 233333 22223 466788999998884433
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00048 Score=70.74 Aligned_cols=111 Identities=21% Similarity=0.212 Sum_probs=76.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCcee-------------cCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTR-------------VYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~-------------~~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||.|.||..+|.+|...|++|.++.|... +.....|+.. +.+..+.+..+|+|+++++..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~- 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT- 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-
Confidence 6899999999999999999999999999988652 2222222110 111223467899999999854
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEE
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAAL 290 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaL 290 (501)
++...+ +.....+++++++|...-| +-.++.|.+.+...++.++..
T Consensus 84 ~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~ 129 (313)
T PRK06249 84 ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC 129 (313)
T ss_pred ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence 333333 3344556788899988777 446677777887777766543
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00026 Score=73.48 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=66.1
Q ss_pred CCeEEeeccchHHHHHHHHHHhC--CCEEEEECCCCCch--hhh---hcC--ceecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAF--GFNVIFYDPYLPDG--IEK---SLG--LTRVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~af--G~~Vi~~dr~~~~~--~~~---~~g--v~~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
-++|||||+|.+|+..++.+... ..+|.+||++.... ... ..+ +..+.+.++++++||+|++++|. +.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---RK 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---CC
Confidence 47899999999999877776542 35899999986532 111 234 34567899999999999999874 35
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
-++..+. +|+|+.++.++.-.
T Consensus 205 P~~~~~~---l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGADA 225 (325)
T ss_pred cEecHHH---cCCCCEEEecCCCC
Confidence 6776554 59999999998543
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0014 Score=67.15 Aligned_cols=130 Identities=21% Similarity=0.232 Sum_probs=89.3
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||++.|||-+. +|+.+|.+|...++.|+.+..+. .++++.+++||+|+.++. ..+++..
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T-------------~~l~~~~~~ADIvIsAvG----kp~~i~~ 214 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT-------------QDLPAVTRRADVLVVAVG----RPHLITP 214 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecC----CcCccCH
Confidence 58999999999875 69999999999999999886432 268899999999999986 3478877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC--ceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR--IRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTEL 328 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~--I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~ 328 (501)
+. .|+|+++||++--.+.++ .|+ +.| ||- .+-.. . --.+||=-+|.-.-+..-+
T Consensus 215 ~~---vk~GavVIDVGin~~~~~--------~gk~~l~G---DVd-~~v~~-----~----a~~iTPVPGGVGp~T~a~L 270 (287)
T PRK14173 215 EM---VRPGAVVVDVGINRVGGN--------GGRDILTG---DVH-PEVAE-----V----AGALTPVPGGVGPMTVAML 270 (287)
T ss_pred HH---cCCCCEEEEccCccccCC--------CCceeeec---ccc-HhHHh-----h----CcEEecCCCChhHHHHHHH
Confidence 66 589999999997654321 345 655 665 22110 1 1268998777655444434
Q ss_pred HHHHHHHHHHHHhC
Q psy7383 329 REMAASEIRRAIVG 342 (501)
Q Consensus 329 ~~~~~~ni~~~l~G 342 (501)
.+-+++..++...|
T Consensus 271 ~~N~~~a~~~~~~~ 284 (287)
T PRK14173 271 MANTVIAALRRRGG 284 (287)
T ss_pred HHHHHHHHHHHccC
Confidence 34344333443333
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00039 Score=72.94 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=66.1
Q ss_pred eEEeeccchHHHHHHHHHHhCC--------CEEEEECCCC---Cchh----h------h-------hcCceecCCHHHHH
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFG--------FNVIFYDPYL---PDGI----E------K-------SLGLTRVYTLQDLL 228 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG--------~~Vi~~dr~~---~~~~----~------~-------~~gv~~~~sLdelL 228 (501)
+|+|||.|..|.++|..|...| .+|..|.+.. .... . + ..++....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998766 9999998732 1110 0 0 11233446899999
Q ss_pred hcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q psy7383 229 FQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 229 ~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~v 270 (501)
.++|+|++++|.. ..+.++ .+.-..++++.++|+++-|=-
T Consensus 81 ~~ADiIIlAVPs~-~i~~vl-~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 81 KGADILVFVIPHQ-FLEGIC-KQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred hcCCEEEEECChH-HHHHHH-HHHHhhcCCCCEEEEEeCCcc
Confidence 9999999999932 333333 344456788999999999843
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00064 Score=69.54 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=88.7
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||++.|||-+. +|+.+|.+|...++.|+.+..+. .++.+.+++||+|+.++.- .++|..
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T-------------~~l~~~~~~ADIvI~AvG~----~~~i~~ 216 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT-------------KDLPQVAKEADILVVATGL----AKFVKK 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCC----cCccCH
Confidence 59999999999986 58999999999999999886421 2588999999999999873 467776
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+. .|+|+++||++--.+ .+|++.| ||-.++-. .. --.+||=-+|.-.=+..-+.+
T Consensus 217 ~~---vk~GavVIDvGin~~----------~~gkl~G---Dvdfe~~~-----~~----a~~iTPVPGGVGpvT~a~L~~ 271 (284)
T PRK14170 217 DY---IKPGAIVIDVGMDRD----------ENNKLCG---DVDFDDVV-----EE----AGFITPVPGGVGPMTITMLLA 271 (284)
T ss_pred HH---cCCCCEEEEccCccc----------CCCCeec---ccchHHHH-----hh----ccEecCCCCChHHHHHHHHHH
Confidence 55 689999999986543 1467766 66321110 01 137899877765544444444
Q ss_pred HHHHHHHHHH
Q psy7383 331 MAASEIRRAI 340 (501)
Q Consensus 331 ~~~~ni~~~l 340 (501)
-+++..++.+
T Consensus 272 N~~~a~~~~~ 281 (284)
T PRK14170 272 NTLKAAKRIW 281 (284)
T ss_pred HHHHHHHHHh
Confidence 4444444433
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0016 Score=66.66 Aligned_cols=112 Identities=16% Similarity=0.279 Sum_probs=82.7
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHh--CCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKA--FGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~a--fG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI 248 (501)
++.||++.|||-+. +|+.+|.+|.. .++.|+++..+ ..++.+.+++||+|+.++.- .++|
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~-------------T~~l~~~~k~ADIvV~AvGk----p~~i 217 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG-------------TRDLAAHTRRADIIVAAAGV----AHLV 217 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC-------------CCCHHHHHHhCCEEEEecCC----cCcc
Confidence 58999999999875 69999999987 79999988643 13688999999999999873 3678
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
..+. +|+|+++||++--.+ .+|++.| ||- .+=.. .- -.+||--+|.-.=+..
T Consensus 218 ~~~~---ik~GavVIDvGin~~----------~~gkl~G---Dvd-~~v~~-----~a----~~iTPVPGGVGp~T~a 269 (284)
T PRK14193 218 TADM---VKPGAAVLDVGVSRA----------GDGKLVG---DVH-PDVWE-----VA----GAVSPNPGGVGPMTRA 269 (284)
T ss_pred CHHH---cCCCCEEEEcccccc----------CCCcEEe---ecC-HhHHh-----hC----CEEeCCCCChhHHHHH
Confidence 7755 689999999997653 3456766 765 22111 11 2689997776554333
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00046 Score=70.49 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=81.0
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+ .+|+.+|.+|...|+.|+.+..+. .++.+.+++||+|+.++. ..++|..
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T-------------~~l~~~~~~ADIvV~AvG----kp~~i~~ 216 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT-------------KDLKAHTKKADIVIVGVG----KPNLITE 216 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEEecC----cccccCH
Confidence 5899999999999 889999999999999999876321 257889999999999986 3467776
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEA 323 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~e 323 (501)
+. .|+|+++||++--.+. +|++.| ||-.++=.. . --.+||=-+|.-.=
T Consensus 217 ~~---vk~gavvIDvGin~~~----------~gkl~G---DVd~~~~~~-----~----a~~iTPVPGGVGpv 264 (281)
T PRK14183 217 DM---VKEGAIVIDIGINRTE----------DGRLVG---DVDFENVAK-----K----CSYITPVPGGVGPM 264 (281)
T ss_pred HH---cCCCcEEEEeeccccC----------CCCeEC---CccHHHHHh-----h----ceEecCCCCCChHH
Confidence 55 5799999999854321 256665 764322111 1 13589987776543
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00031 Score=66.97 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=63.4
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCch--hhhhc----Cc--ee--cC---CHHHHHhcCCEEEEe
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSL----GL--TR--VY---TLQDLLFQSDCVSLH 237 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~----gv--~~--~~---sLdelL~~sDvVil~ 237 (501)
.++++++.|+|. |.+|+.+++.|...|.+|++++|+.... ..... +. .. .. ++.++++++|+|+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 478999999995 9999999999999999999999875321 11111 11 11 11 234678899999888
Q ss_pred ccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccC
Q psy7383 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVD 272 (501)
Q Consensus 238 lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVd 272 (501)
.|.... ..+. .-...+++.+++|+.+..-++
T Consensus 105 t~~g~~--~~~~--~~~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 105 GAAGVE--LLEK--LAWAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred CCCCce--echh--hhcccCceeEEEEccCCCCCC
Confidence 875432 1111 112345577888887765443
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00032 Score=72.88 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=70.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc---------------hhhhhcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD---------------GIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~---------------~~~~~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
++|.|||.|..|.++|+.|...|.+|..|.++... +.....++....+++++++.||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 57999999999999999999999999999875321 111112344456899999999999999993
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
...+.++ ++.-..+++++.+|+++-|=-.+.-
T Consensus 82 -~~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t~ 113 (329)
T COG0240 82 -QALREVL-RQLKPLLLKDAIIVSATKGLEPETG 113 (329)
T ss_pred -HHHHHHH-HHHhhhccCCCeEEEEeccccCCCc
Confidence 2233333 2222467899999999998544433
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0014 Score=69.55 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=92.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--------------hh------hhhcC-ceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--------------GI------EKSLG-LTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--------------~~------~~~~g-v~~~~sLdelL~~sDvV 234 (501)
.+|||||+|-||..+|..+...|++|++||.+... +. ..+.| ++...+.+ .++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE-ELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh-hcccCCEE
Confidence 78999999999999999999999999999965321 00 01112 23333343 35599999
Q ss_pred EEeccC--ch----hhhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC--CceEEEEecC---CCCCCCCC
Q psy7383 235 SLHCTL--NE----HNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG--RIRAAALDVH---ESEPYNVF 301 (501)
Q Consensus 235 il~lPl--t~----~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g--~I~GAaLDVf---e~EPl~~~ 301 (501)
++|+|. +. +...+.+ +.....||+|.++|==|.-..=.++.++.-|.+. .+. +.-|+| ..|-..+
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P- 166 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP- 166 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC-
Confidence 999992 21 2222332 3466779999999988887776777777666653 233 235653 4454333
Q ss_pred CCCC---CCCCCeEEecCCCCCcHHHHHH
Q psy7383 302 QGNL---KDAPNILCTPHAAFYSEASCTE 327 (501)
Q Consensus 302 ~~pL---~~~pNVilTPHiAg~T~ea~~~ 327 (501)
.+.+ -+.|+| +||.|+++.+.
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~~e~ 190 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKCAEL 190 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHHHHH
Confidence 3333 344555 46666655443
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00099 Score=76.22 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=83.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hh-----h------hhc-------------CceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GI-----E------KSL-------------GLTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~-----~------~~~-------------gv~~~~sLdelL~~ 230 (501)
++|+|||.|.||..||..+...|++|+.||++... +. . .+. .++...++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 57999999999999999999999999999987431 00 0 001 12333455 44799
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
||+|+=++|.+-+.+.-+-++.-+.++++++|.....+ +....|.+.++.. =.-+++-.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~~g~Hff 452 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKRP-ENFCGMHFF 452 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCC-ccEEEEecC
Confidence 99999999999999888888888899999998665554 6667777777542 222355544
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00077 Score=69.08 Aligned_cols=122 Identities=12% Similarity=0.122 Sum_probs=85.9
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...++.|+.+..+ ..+|.+.+++||+|+.++. -.++|..
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~-------------T~~L~~~~~~ADIvV~AvG----kp~~i~~ 218 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK-------------THNLSSITSKADIVVAAIG----SPLKLTA 218 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEccC----CCCccCH
Confidence 58999999999986 5999999999999999988632 1368899999999999987 2467877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+. .|+|+++||++--.+ .+|++.| ||-.++=.. . =-.+||=-+|.-.=+..-+.+
T Consensus 219 ~~---vk~GavVIDvGin~~----------~~gkl~G---DVd~~~v~~-----~----a~~iTPVPGGVGp~T~a~L~~ 273 (288)
T PRK14171 219 EY---FNPESIVIDVGINRI----------SGNKIIG---DVDFENVKS-----K----VKYITPVPGGIGPMTIAFLLK 273 (288)
T ss_pred HH---cCCCCEEEEeecccc----------CCCCeEC---CccHHHHHh-----h----ceEeCCCCCCcHHHHHHHHHH
Confidence 55 689999999985432 2456665 663221110 1 137899878766544443333
Q ss_pred HHHHH
Q psy7383 331 MAASE 335 (501)
Q Consensus 331 ~~~~n 335 (501)
-+++.
T Consensus 274 N~v~a 278 (288)
T PRK14171 274 NTVKA 278 (288)
T ss_pred HHHHH
Confidence 33333
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00059 Score=68.46 Aligned_cols=124 Identities=18% Similarity=0.193 Sum_probs=73.2
Q ss_pred HHHHHHhCC--CEEEEECCCCCc-hhhhhcCcee-cCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 190 VALRAKAFG--FNVIFYDPYLPD-GIEKSLGLTR-VYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 190 iA~~L~afG--~~Vi~~dr~~~~-~~~~~~gv~~-~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
+|+.|+..| .+|++||++... ......|+.. ..+-.+.++++|+|++|+|.. .+..++ ++....++++++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 577888777 899999988643 2233456532 222257899999999999954 344444 5566779999999999
Q ss_pred CCCCccCHHHHHHHHHcCCceEEEEec---CCCCCC--CCCCCCCCCCCCeEEecCCC
Q psy7383 266 ARGGLVDDDSLAAALKQGRIRAAALDV---HESEPY--NVFQGNLKDAPNILCTPHAA 318 (501)
Q Consensus 266 aRG~vVde~aL~~aL~~g~I~GAaLDV---fe~EPl--~~~~~pL~~~pNVilTPHiA 318 (501)
+.-+.--.+++.+.+. .... ++=+ |-.|-- ...+..|++-.++++||+-.
T Consensus 79 ~SvK~~~~~~~~~~~~-~~~~--~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLP-EGVR--FVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp -S-CHHHHHHHHHHHT-SSGE--EEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred CCCCHHHHHHHHHhcC-cccc--eeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 8866555555555555 2222 1112 222211 11135788888999999865
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0005 Score=72.05 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=70.3
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHh-CC-CEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKA-FG-FNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~a-fG-~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
++++++|.|+|. |.||+.+++.|.. .| .+++.++|+... ....++......++++.+.++|+|+.+.- ....
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts---~~~~ 228 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVAS---MPKG 228 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCc---CCcC
Confidence 589999999998 8999999999974 56 489999986432 12223321223468899999999886653 2234
Q ss_pred -cccHHHHhcCCCCcEEEEcCCCCccCH
Q psy7383 247 -LINEFTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 247 -lI~~~~l~~MK~gAilINvaRG~vVde 273 (501)
+|+.+. |+++.++||+++..=||.
T Consensus 229 ~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 229 VEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 377764 489999999999876664
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00098 Score=68.61 Aligned_cols=119 Identities=23% Similarity=0.228 Sum_probs=85.1
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...|+.|+.+..+ ..++++.+++||+|+.++.- .++|..
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~-------------T~~l~~~~~~ADIvIsAvGk----p~~i~~ 217 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR-------------TQDLASITREADILVAAAGR----PNLIGA 217 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEccCC----cCccCH
Confidence 58999999999876 5999999999999999988642 12688999999999999873 367876
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTEL 328 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~ 328 (501)
+. .|+|+++||++--.+.|.. ++|++.| ||-.++=.. . --.+||--+|.-.=+..-+
T Consensus 218 ~~---ik~gavVIDvGin~~~~~~------~~gkl~G---Dvd~~~v~~-----~----a~~iTPVPGGVGp~T~a~L 274 (297)
T PRK14186 218 EM---VKPGAVVVDVGIHRLPSSD------GKTRLCG---DVDFEEVEP-----V----AAAITPVPGGVGPMTVTML 274 (297)
T ss_pred HH---cCCCCEEEEeccccccccc------cCCceeC---CccHHHHHh-----h----ceEecCCCCCchHHHHHHH
Confidence 55 6899999999976543221 1466665 664222110 1 1379999777655443333
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00052 Score=68.00 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=70.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEE-ECCCC--------C-chhh---hhcC-------ceecCCHHHHH-hc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF-YDPYL--------P-DGIE---KSLG-------LTRVYTLQDLL-FQ 230 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~-~dr~~--------~-~~~~---~~~g-------v~~~~sLdelL-~~ 230 (501)
++.+++|.|.|||++|+.+|+.|..+|++|++ .|... + .... +..+ ...+ +.++++ .+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~ 106 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELD 106 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeec
Confidence 48999999999999999999999999999994 44321 1 1111 1111 1112 234433 37
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
|||++-|.+ .+.|+.+...+++ =.+++--+-+.+ . ..-.+.|+++.|.
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~ 154 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL 154 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence 899987754 5778888888887 345555555555 4 5556778887776
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00034 Score=72.05 Aligned_cols=90 Identities=17% Similarity=0.054 Sum_probs=67.0
Q ss_pred ccCCeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCch--hhhhc---Ccee-cCCHHHHHhcCCEEEEeccCchhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPDG--IEKSL---GLTR-VYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~~--~~~~~---gv~~-~~sLdelL~~sDvVil~lPlt~~T 244 (501)
...++|+|||.|.+|+..++.+.. ++. +|.+|||+.... ..... ++.. +.+.++++.++|+|+.++|.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~--- 199 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR--- 199 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence 456899999999999999999864 664 699999986431 22221 2222 357899999999999998744
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
.-+|.. .+|+|+.++.++.-.
T Consensus 200 ~Pl~~~----~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 200 TPVYPE----AARAGRLVVAVGAFT 220 (304)
T ss_pred CceeCc----cCCCCCEEEecCCCC
Confidence 467754 269999999998543
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=67.55 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=81.1
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...|+.|+.++.+ ..++.+..++||+|+.++.- .++|..
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~-------------T~~l~~~~~~ADIvIsAvGk----p~~i~~ 217 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK-------------TKNLKEVCKKADILVVAIGR----PKFIDE 217 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEcCCC----cCccCH
Confidence 58999999999876 5999999999999999998742 12688999999999999873 467877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEA 323 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~e 323 (501)
+. .|+|+++||++--.+ .|++.| ||-.++-. +. --.+||--+|.-.=
T Consensus 218 ~~---ik~gavVIDvGin~~-----------~gkl~G---Dvd~~~v~-----~~----a~~iTPVPGGVGp~ 264 (278)
T PRK14172 218 EY---VKEGAIVIDVGTSSV-----------NGKITG---DVNFDKVI-----DK----ASYITPVPGGVGSL 264 (278)
T ss_pred HH---cCCCcEEEEeecccc-----------CCceee---eccHHHHH-----hh----ccEecCCCCCccHH
Confidence 65 689999999975432 256766 77321110 01 13689997776553
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0031 Score=63.70 Aligned_cols=156 Identities=13% Similarity=0.126 Sum_probs=92.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEE-ECCCC----Cch-----h-----hh-hc------------CceecCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF-YDPYL----PDG-----I-----EK-SL------------GLTRVYT 223 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~-~dr~~----~~~-----~-----~~-~~------------gv~~~~s 223 (501)
+++|+||.|.|||++|+.+|+.|..+|++|++ .|.+- +.+ + .+ .. +.+.+ +
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~ 113 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-E 113 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-C
Confidence 58999999999999999999999999999994 34210 000 0 00 01 12333 3
Q ss_pred HHHHH-hcCCEEEEeccCchhhhhcccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC
Q psy7383 224 LQDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQMR--PGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300 (501)
Q Consensus 224 LdelL-~~sDvVil~lPlt~~T~~lI~~~~l~~MK--~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~ 300 (501)
.++++ .+|||++-| .+.+.|+++...+++ .=.+++-.+-+.+-. +-.+.|.++.|. .+=|+.-+----.
T Consensus 114 ~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~-vvPD~laNaGGVi 185 (254)
T cd05313 114 GKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL-FAPGKAANAGGVA 185 (254)
T ss_pred CcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE-EECchhhcCCCee
Confidence 44543 489999877 468899999888885 345667777777644 345677777765 2334332211000
Q ss_pred CCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 301 FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 301 ~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
-+-|--..| .-|.-|.-++..+++.+.+.+...+.+
T Consensus 186 -vs~~E~~qn---~~~~~w~~e~V~~~l~~~m~~~~~~v~ 221 (254)
T cd05313 186 -VSGLEMSQN---SQRLSWTAEEVDAKLKDIMKNIHDACA 221 (254)
T ss_pred -eeHHHhhcc---cccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000011 223344456666666666655555544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00082 Score=68.76 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=64.7
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||++.|||-+. +|+.+|.+|...|+.|+.++.+. .++.+.+++||+|+.++. ..++|..
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T-------------~~l~~~~~~ADIvIsAvG----k~~~i~~ 218 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT-------------QNLPSIVRQADIIVGAVG----KPEFIKA 218 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEeCC----CcCccCH
Confidence 58999999999876 59999999999999999987431 268899999999999987 3467776
Q ss_pred HHHhcCCCCcEEEEcCCC
Q psy7383 251 FTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG 268 (501)
+. .|+|+++||++--
T Consensus 219 ~~---ik~gavVIDvGin 233 (284)
T PRK14177 219 DW---ISEGAVLLDAGYN 233 (284)
T ss_pred HH---cCCCCEEEEecCc
Confidence 55 6899999999854
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00082 Score=68.72 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=82.1
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||++.|||-+. +|+.+|.+|...++.|+.+..+. .++++..++||+|+.++. -.++|..
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T-------------~nl~~~~~~ADIvIsAvG----kp~~i~~ 216 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------KDLSLYTRQADLIIVAAG----CVNLLRS 216 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEcCC----CcCccCH
Confidence 58999999999986 59999999999999999887432 268899999999999987 3467877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+. .|+|+++||++--.+ .+|++.| ||-..+=. ..--.+||=-+|.-.=+..
T Consensus 217 ~~---vk~GavVIDvGin~~----------~~gkl~G---DVd~~~v~---------~~a~~iTPVPGGVGp~T~a 267 (282)
T PRK14166 217 DM---VKEGVIVVDVGINRL----------ESGKIVG---DVDFEEVS---------KKSSYITPVPGGVGPMTIA 267 (282)
T ss_pred HH---cCCCCEEEEeccccc----------CCCCeeC---CCCHHHHH---------hhccEecCCCCCchHHHHH
Confidence 64 689999999985432 1356665 66422110 0113689987776554333
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0008 Score=69.26 Aligned_cols=90 Identities=13% Similarity=0.291 Sum_probs=62.9
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhh-----h--------cCceecCCHHHHH-hcCCEEEEeccC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEK-----S--------LGLTRVYTLQDLL-FQSDCVSLHCTL 240 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~-----~--------~gv~~~~sLdelL-~~sDvVil~lPl 240 (501)
+|+|||.|.||..+|..|...|.+|..|+|+... ...+ . .++....++++.+ ..+|+|++++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 6999999999999999999999999999986421 0111 0 1122334666766 589999999984
Q ss_pred chhhhhcccHHHHh-cCCCCcEEEEcCCC
Q psy7383 241 NEHNHHLINEFTIK-QMRPGAFLVNTARG 268 (501)
Q Consensus 241 t~~T~~lI~~~~l~-~MK~gAilINvaRG 268 (501)
. ++..++ ++... .+++++.+|.+.-|
T Consensus 82 ~-~~~~~l-~~l~~~~l~~~~~vv~~~nG 108 (326)
T PRK14620 82 Q-QLRTIC-QQLQDCHLKKNTPILICSKG 108 (326)
T ss_pred H-HHHHHH-HHHHHhcCCCCCEEEEEEcC
Confidence 3 344444 23333 56778878878777
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00081 Score=68.13 Aligned_cols=102 Identities=21% Similarity=0.165 Sum_probs=65.7
Q ss_pred CeEEeeccchHHHHHHHHHHhC---CCEEE-EECCCCCchhhhhcCceecCCHHHH-HhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF---GFNVI-FYDPYLPDGIEKSLGLTRVYTLQDL-LFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af---G~~Vi-~~dr~~~~~~~~~~gv~~~~sLdel-L~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.||||||||.||+.+++.+..- ++++. +|++...........+..+.+++++ ..+.|+|+=|... ..+-+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~-----~av~e 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQ-----QAIAE 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCH-----HHHHH
Confidence 5899999999999999998653 35544 4555532221112225556789997 5789999988652 22222
Q ss_pred HHHhcCCCCcEEEEcCCCCccC---HHHHHHHHHc
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVD---DDSLAAALKQ 282 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVd---e~aL~~aL~~ 282 (501)
-..+.|+.|.-+|=+|=|.+.| ++.|.++.++
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 2334456677777778888887 3455555555
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00054 Score=71.29 Aligned_cols=106 Identities=15% Similarity=0.116 Sum_probs=69.8
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEEE-ECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVIF-YDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi~-~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
.+|+|||+|+||+.+++.+... ++++.+ ||++.........++....+.++++.+.|+|++|+|.... -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHHH
Confidence 5899999999999999999765 789775 7877422222233444445677888999999999885322 14455
Q ss_pred hcCCCCcEEEEcCCCC--ccC-HHHHHHHHHc-CCce
Q psy7383 254 KQMRPGAFLVNTARGG--LVD-DDSLAAALKQ-GRIR 286 (501)
Q Consensus 254 ~~MK~gAilINvaRG~--vVd-e~aL~~aL~~-g~I~ 286 (501)
..|+.|.-+|+..--. +-+ .+.|.++.++ |++.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 5677777777774321 122 3344555554 5654
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00057 Score=71.29 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=64.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hh------hhc--------CceecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IE------KSL--------GLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~------~~~--------gv~~~~sLdelL~~sDvVil~lP 239 (501)
++|+|||.|.+|..+|..|...| +|..|.++.... .. +.. .+....++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 67999999999999999999998 677787653210 00 001 12334577888999999999999
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
. ..++.++ ++....+++++++|++.-|
T Consensus 87 s-~~~~~vl-~~i~~~l~~~~~vIsl~kG 113 (341)
T PRK12439 87 S-HGFRGVL-TELAKELRPWVPVVSLVKG 113 (341)
T ss_pred H-HHHHHHH-HHHHhhcCCCCEEEEEEeC
Confidence 3 3444444 3444567888899999887
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0019 Score=65.81 Aligned_cols=113 Identities=20% Similarity=0.277 Sum_probs=84.9
Q ss_pred cccCCeEEeeccchH-HHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRI-GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~I-G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+|+||++.|||-++| |+.|+..|...++.|.++..+. .++.+.++++|+|+.++- -.++|..
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T-------------~~l~~~~k~ADIvv~AvG----~p~~i~~ 215 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT-------------KDLASITKNADIVVVAVG----KPHFIKA 215 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC-------------CCHHHHhhhCCEEEEecC----Ccccccc
Confidence 589999999999986 7999999999999999987432 368889999999999975 3467765
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+ ..|+|+++|+++--.+-+ +++.| ||-..+- ....-.+||--||.-.-+..
T Consensus 216 d---~vk~gavVIDVGinrv~~----------~kl~G---DVdf~~v---------~~~a~~iTPVPGGVGPmTva 266 (283)
T COG0190 216 D---MVKPGAVVIDVGINRVND----------GKLVG---DVDFDSV---------KEKASAITPVPGGVGPMTVA 266 (283)
T ss_pred c---cccCCCEEEecCCccccC----------CceEe---eccHHHH---------HHhhcccCCCCCccCHHHHH
Confidence 3 478999999998755433 67766 7743331 12224689988887664433
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.001 Score=68.31 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=65.3
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.||++.|||-+. +|+.+|.+|...++.|+.++.+. .++.+.+++||+|+.++. ..++|..
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T-------------~~l~~~~~~ADIvVsAvG----kp~~i~~ 219 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT-------------RDLADYCSKADILVAAVG----IPNFVKY 219 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccC----CcCccCH
Confidence 58999999999886 59999999999999999887432 268899999999999987 3467877
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~ 269 (501)
+. .|+|+++||++--.
T Consensus 220 ~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 220 SW---IKKGAIVIDVGINS 235 (294)
T ss_pred HH---cCCCCEEEEecccc
Confidence 65 57999999998644
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0022 Score=73.15 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=82.0
Q ss_pred CeEEeeccchHHHHHHHHHH-hCCCEEEEECCCCCc---hh-------h--hh-------------cCceecCCHHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAK-AFGFNVIFYDPYLPD---GI-------E--KS-------------LGLTRVYTLQDLLF 229 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~-afG~~Vi~~dr~~~~---~~-------~--~~-------------~gv~~~~sLdelL~ 229 (501)
++|+|||.|.||..+|..+. ..|++|+.||++... .. . .+ ..+....++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 57999999999999999987 489999999987421 00 0 00 112333455 4579
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
+||+|+=++|.+.+.+.-+-++.-+.++++++|.....+ +....|.+.++. .=.-+++--|
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hff 444 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYF 444 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecC
Confidence 999999999999998888888888889999988655554 666667777643 2223455544
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00087 Score=65.08 Aligned_cols=94 Identities=17% Similarity=0.345 Sum_probs=69.1
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhh------hhcC-------------------cee--
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIE------KSLG-------------------LTR-- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~------~~~g-------------------v~~-- 220 (501)
..|..++|+|||+|.+|..+|..|...|. +++.+|+..-+ .+. ...| ++.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 35899999999999999999999999999 69999876100 000 0000 111
Q ss_pred --c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 221 --V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 221 --~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
. .++++++.++|+|+.+ ..+.+++.++..+....++...++...
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~ 144 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS 144 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 0 1345678899999988 588899999988888888877777643
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0046 Score=70.72 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=83.5
Q ss_pred CeEEeeccchHHHHHHHHHH-hCCCEEEEECCCCCc-hh-----hh------h-------------cCceecCCHHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAK-AFGFNVIFYDPYLPD-GI-----EK------S-------------LGLTRVYTLQDLLF 229 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~-afG~~Vi~~dr~~~~-~~-----~~------~-------------~gv~~~~sLdelL~ 229 (501)
++|+|||.|.||..||..+. ..|++|..||++... +. .+ + ..+....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 67999999999999999988 789999999986421 00 00 0 012333455 4579
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
+||+|+=++|.+.+.+.-+-++.-+.++++++|.....+ +....|.+.+... =..+++-.|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p-~r~ig~Hff 449 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARP-EQVIGLHYF 449 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCcc-cceEEEecC
Confidence 999999999999888888888888889999999766555 6777777776532 223455555
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00068 Score=67.03 Aligned_cols=94 Identities=26% Similarity=0.367 Sum_probs=65.2
Q ss_pred CeEEeeccchHHHHHHHHHHhC--CCE-EEEECCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--GFN-VIFYDPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G~~-Vi~~dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+|||||||.||+.+.+.++.- .++ |++||+..++. .++..+...+.+++|++++.|+|+=|.. .+... +
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS--~~Av~---e 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS--PEAVR---E 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC--HHHHH---H
Confidence 3799999999999999999742 444 78899886543 3334444445689999999999988754 22222 2
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~ 274 (501)
-..+.||.|-=+|=+|-|.+.|+.
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChH
Confidence 234445666666777778877655
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00096 Score=69.81 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=83.4
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...++.|..+..+. .++++..++|||||.++. -.++|..
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T-------------~nl~~~~~~ADIvIsAvG----kp~~v~~ 273 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT-------------KDPEQITRKADIVIAAAG----IPNLVRG 273 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC-------------CCHHHHHhhCCEEEEccC----CcCccCH
Confidence 59999999999987 59999999999999999886432 257889999999999987 3467877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+. .|+|+++||++--.+.+.. -+.| ++.| ||..++=... --.+||=-+|.-.-+..
T Consensus 274 d~---vk~GavVIDVGin~~~~~~-----~~~g~klvG---DVdfe~v~~~---------as~iTPVPGGVGpmTva 330 (345)
T PLN02897 274 SW---LKPGAVVIDVGTTPVEDSS-----CEFGYRLVG---DVCYEEALGV---------ASAITPVPGGVGPMTIT 330 (345)
T ss_pred HH---cCCCCEEEEcccccccccc-----ccCCCeeEe---cccHHHHHhh---------ccccCCCCCchhHHHHH
Confidence 55 6899999999865422110 0124 5665 8764332111 13688987776554333
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=67.76 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=64.3
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...|+.|+.++.+. .++.+.+++||+|+.++.- .++|..
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T-------------~dl~~~~k~ADIvIsAvGk----p~~i~~ 217 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-------------TDLKSHTTKADILIVAVGK----PNFITA 217 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC-------------CCHHHHhhhcCEEEEccCC----cCcCCH
Confidence 58999999999876 69999999999999999887431 2688889999999999873 467776
Q ss_pred HHHhcCCCCcEEEEcCCC
Q psy7383 251 FTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG 268 (501)
+. .|+|+++||++--
T Consensus 218 ~~---vk~gavVIDvGin 232 (282)
T PRK14180 218 DM---VKEGAVVIDVGIN 232 (282)
T ss_pred HH---cCCCcEEEEeccc
Confidence 54 6899999999853
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.001 Score=69.98 Aligned_cols=119 Identities=16% Similarity=0.230 Sum_probs=83.7
Q ss_pred ccccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 171 ARIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 171 ~~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
.+++||++.|||-+. +|+.+|.+|...++.|+.+..+. .++++.+++|||||.++. ..++|.
T Consensus 227 i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T-------------~nl~~~~r~ADIVIsAvG----kp~~i~ 289 (364)
T PLN02616 227 VEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEITREADIIISAVG----QPNMVR 289 (364)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC-------------CCHHHHHhhCCEEEEcCC----CcCcCC
Confidence 368999999999886 58999999999999999886431 368899999999999986 346787
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
.+. .|+|+++||++--.+.+.. =++| ++.| ||-.++-.. . --.+||=-+|.-.=+..
T Consensus 290 ~d~---vK~GAvVIDVGIn~~~~~~-----~~~g~klvG---DVdfe~v~~-----~----as~ITPVPGGVGpmTva 347 (364)
T PLN02616 290 GSW---IKPGAVVIDVGINPVEDAS-----SPRGYRLVG---DVCYEEACK-----V----ASAVTPVPGGVGPMTIA 347 (364)
T ss_pred HHH---cCCCCEEEecccccccccc-----ccCCCeEEe---cCcHHHHHh-----h----ccccCCCCCchHHHHHH
Confidence 765 6899999999864432110 0123 5655 775333211 1 13689988876554333
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0022 Score=73.34 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=78.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch---h---h------hhc-------------CceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG---I---E------KSL-------------GLTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~---~---~------~~~-------------gv~~~~sLdelL~~ 230 (501)
++|+|||.|.||..||..+...|++|+.||++...- . . .+. .++...++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 579999999999999999999999999999874310 0 0 000 12223345 34799
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
||+|+=+++.+-+.+.-+-++.-+.++++++|-....+ ++...|.+.++.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~ 442 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR 442 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence 99999999998888888878888899999998665554 667777777654
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00078 Score=72.18 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=71.4
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCc--hhhhhcCceec--CCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPD--GIEKSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~--~~~~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
+|+++++.|||.|.||.-+|+.|...| .+|++.+|+..+ .+++.++...+ .++.+.+.++|+||.+.. ....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 489999999999999999999999999 579999998754 34666775543 345566999999999854 4456
Q ss_pred cccHHHHhcC---CCCcEEEEcCCCCccCH
Q psy7383 247 LINEFTIKQM---RPGAFLVNTARGGLVDD 273 (501)
Q Consensus 247 lI~~~~l~~M---K~gAilINvaRG~vVde 273 (501)
+|..+.+... ++.-++||.+=..-|+.
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavPRdie~ 281 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVPRDVEP 281 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence 6655544432 11257888875544443
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00076 Score=72.45 Aligned_cols=91 Identities=11% Similarity=0.196 Sum_probs=64.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhhhcC-ce--ecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEKSLG-LT--RVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~~~g-v~--~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
.+.|++|.|||.|.||+.+++.|...|. +|++++|+... .+...++ .. ...++.+++.++|+||.+.+. ..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a---~~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV---LE 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC---CC
Confidence 5889999999999999999999999995 79999998643 2333333 22 223456779999999998763 34
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.+|..+.+. .+.-+|||.+=
T Consensus 255 ~vi~~~~~~--~~~~~~iDLav 274 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDISI 274 (414)
T ss_pred eeECHHHhC--CCCeEEEEeCC
Confidence 566655542 12345666654
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0013 Score=67.49 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=80.9
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhC----CCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAF----GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~af----G~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
+++||++.|||-+. +|+.+|.+|... ++.|+.+..+. .++.+.+++||+|+.++.- .+
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T-------------~~l~~~~~~ADIvV~AvG~----p~ 212 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS-------------ENLTEILKTADIIIAAIGV----PL 212 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCC----cC
Confidence 58999999999886 599999999887 78999876421 2688999999999999863 36
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEAS 324 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea 324 (501)
+|..+. .|+|+++||++--.+.+.. .+| ++.| ||-.++-... --.+||=-+|.-.=+
T Consensus 213 ~i~~~~---ik~GavVIDvGin~~~~~~------~~g~kl~G---DVd~e~~~~~---------a~~iTPVPGGVGp~T 270 (287)
T PRK14181 213 FIKEEM---IAEKAVIVDVGTSRVPAAN------PKGYILVG---DVDFNNVVPK---------CRAITPVPGGVGPMT 270 (287)
T ss_pred ccCHHH---cCCCCEEEEeccccccccc------CCCCeeEe---ccchHHHHhh---------cccccCCCCchHHHH
Confidence 787765 6899999999865432211 123 4554 7743221111 125788877765543
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0013 Score=67.24 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=82.3
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+. +|+.+|.+|...++.|+.+..+. .++++.+++||+|+.++.- .++|..
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T-------------~nl~~~~~~ADIvI~AvGk----~~~i~~ 216 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT-------------ADLAGEVGRADILVAAIGK----AELVKG 216 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCC----cCccCH
Confidence 58999999999886 59999999999999999886431 2688899999999999872 567877
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+. .|+|+++||++--.+. +|++.| ||-.++-.. . --.+||=-+|.-.=+..
T Consensus 217 ~~---ik~gaiVIDvGin~~~----------~gkl~G---DVd~~~v~~-----~----a~~iTPVPGGVGp~T~a 267 (282)
T PRK14182 217 AW---VKEGAVVIDVGMNRLA----------DGKLVG---DVEFAAAAA-----R----ASAITPVPGGVGPMTRA 267 (282)
T ss_pred HH---cCCCCEEEEeeceecC----------CCCeeC---CCCHHHHHh-----h----ccEecCCCCCChHHHHH
Confidence 65 6899999999865432 356665 764222111 0 13689987776554433
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.005 Score=60.68 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=68.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEE-ECCCC-------C--chh--h-hhcCceec-----CCHHHHH-hcCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF-YDPYL-------P--DGI--E-KSLGLTRV-----YTLQDLL-FQSD 232 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~-~dr~~-------~--~~~--~-~~~gv~~~-----~sLdelL-~~sD 232 (501)
+|.|++|.|.|||++|+.+|+.|..+|.+|++ .|.+. + +-. . ...++..+ .+-++++ .+||
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 48999999999999999999999999997655 55433 0 100 0 11111111 0123442 3899
Q ss_pred EEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 233 CVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 233 vVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+++-|.. .+.|+.+....++ =.+++--+.+.+-+ + -.+.|+++.|.
T Consensus 100 VlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~-~-a~~~L~~~Gi~ 145 (217)
T cd05211 100 IFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD-E-ALRILHERGIV 145 (217)
T ss_pred EEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH-H-HHHHHHHCCcE
Confidence 9988765 5688888888887 44555566666544 3 45666666554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0041 Score=71.44 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=83.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hh-----h------hh-------------cCceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GI-----E------KS-------------LGLTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~-----~------~~-------------~gv~~~~sLdelL~~ 230 (501)
++|+|||.|.||..||..+...|++|+.||+.... +. . .+ ..+....+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 57999999999999999999999999999977531 00 0 00 0122334554 5799
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
||+|+=+++.+-+.+.-+-++.-+.++++++|.....+ ++...|.+.++.- =.-.++..|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA--LPIKDIAAVSSRP-EKVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCc-cceEEEeccC
Confidence 99999999999898888888888999999988644333 6777777776542 2334666553
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=57.79 Aligned_cols=78 Identities=24% Similarity=0.258 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCchhhhh----cCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEE
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPDGIEKS----LGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL 262 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~~~~~~----~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAil 262 (501)
...+++.|+..|++|.+|||......... .+++...++++.++.+|+|++++... +-+.+--.+....|+++.+|
T Consensus 19 ~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~~i 97 (106)
T PF03720_consen 19 ALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPPVI 97 (106)
T ss_dssp HHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSEEE
T ss_pred HHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCCEE
Confidence 46899999999999999999986544433 46777778999999999999998744 33333335566779899999
Q ss_pred EEc
Q psy7383 263 VNT 265 (501)
Q Consensus 263 INv 265 (501)
|++
T Consensus 98 iD~ 100 (106)
T PF03720_consen 98 IDG 100 (106)
T ss_dssp EES
T ss_pred EEC
Confidence 998
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00095 Score=69.85 Aligned_cols=88 Identities=26% Similarity=0.303 Sum_probs=63.0
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCC------HHHHHhcCCEEEEeccCchhhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYT------LQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~s------LdelL~~sDvVil~lPlt~~T~~ 246 (501)
.|++|+|+|+|.+|....+.++++|++|+++|++.++ +.++++|.+.+.+ ++++-..+|+|+.+++ . .|-
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-~~~- 242 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-ATL- 242 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-hhH-
Confidence 4899999999999999999999999999999998754 5566676543321 2223333888888777 3 222
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaR 267 (501)
...++.||++..++-++=
T Consensus 243 ---~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 243 ---EPSLKALRRGGTLVLVGL 260 (339)
T ss_pred ---HHHHHHHhcCCEEEEECC
Confidence 345667777777766644
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=67.75 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=64.4
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHh----CCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKA----FGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~a----fG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
+++||++.|||-+. +|+.+|.+|.. .+++|..+..+. .++.+.+++||+|+.++. ..+
T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t-------------~~l~~~~~~ADIVI~AvG----~p~ 216 (286)
T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT-------------PDLAEECREADFLFVAIG----RPR 216 (286)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecC----CCC
Confidence 58999999999986 58999999988 789998876321 268899999999999985 457
Q ss_pred cccHHHHhcCCCCcEEEEcCCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG 268 (501)
+|..+.+ |+|+++||++--
T Consensus 217 li~~~~v---k~GavVIDVGi~ 235 (286)
T PRK14184 217 FVTADMV---KPGAVVVDVGIN 235 (286)
T ss_pred cCCHHHc---CCCCEEEEeeee
Confidence 7888776 999999999843
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=67.54 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=64.0
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHh----CCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKA----FGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~a----fG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
+++||+|.|||-+. +|+.+|.+|.. .++.|..+..+. .++++.+++||+|+.++.. .+
T Consensus 156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-------------~~l~~~~~~ADIvI~Avg~----~~ 218 (295)
T PRK14174 156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-------------KDIPSYTRQADILIAAIGK----AR 218 (295)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCc----cC
Confidence 58999999999886 59999999977 588888776321 2588999999999999852 27
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~ 269 (501)
+|..+.+ |+|+++||++--.
T Consensus 219 li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 219 FITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred ccCHHHc---CCCCEEEEeeccc
Confidence 8888876 9999999998544
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00025 Score=61.42 Aligned_cols=88 Identities=23% Similarity=0.230 Sum_probs=58.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
.|+|++|.|||.|.+|..-++.|...|++|+++++.. ........... ..+++.+.++|+|+++.... + ++++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-~~~~~~i~~~~-~~~~~~l~~~~lV~~at~d~-~----~n~~ 76 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-EFSEGLIQLIR-REFEEDLDGADLVFAATDDP-E----LNEA 76 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-HHHHTSCEEEE-SS-GGGCTTESEEEE-SS-H-H----HHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-hhhhhHHHHHh-hhHHHHHhhheEEEecCCCH-H----HHHH
Confidence 4899999999999999999999999999999999875 11111111111 24556688899998776532 2 4455
Q ss_pred HHhcCCCCcEEEEcC
Q psy7383 252 TIKQMRPGAFLVNTA 266 (501)
Q Consensus 252 ~l~~MK~gAilINva 266 (501)
....++.--++||++
T Consensus 77 i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 77 IYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHTTSEEEET
T ss_pred HHHHHhhCCEEEEEC
Confidence 555566566777774
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0014 Score=67.47 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=73.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchhhhh-----------c--CceecCCHHHHHhcCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGIEKS-----------L--GLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~~~~-----------~--gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
++|+|||.|.||..+|..+...|. +|+.+|.......... . .+....++++ +++||+|++++...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 579999999999999999988776 8999998543211110 0 1222246666 79999999998731
Q ss_pred h-----------hhhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHcCCceEEE--Ee
Q psy7383 242 E-----------HNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAA--LKQGRIRAAA--LD 291 (501)
Q Consensus 242 ~-----------~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~a--L~~g~I~GAa--LD 291 (501)
. .+..++. .+.+....+++++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 1 1112221 123344457899999987533444444444 5556677765 67
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0013 Score=68.16 Aligned_cols=88 Identities=10% Similarity=0.156 Sum_probs=65.0
Q ss_pred cCCeEEeeccchHHHHHHHHHH-hCCC-EEEEECCCCCch--hhh----hcCc--eecCCHHHHHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAK-AFGF-NVIFYDPYLPDG--IEK----SLGL--TRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~-afG~-~Vi~~dr~~~~~--~~~----~~gv--~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
..++|+|||.|.+|+..++.+. ..+. +|.+|||+.... ..+ ..++ ..+.++++++.++|+|+++.|.+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4678999999999998887764 4554 699999986432 211 1233 34567899999999999998854
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.-+|. +.+|+|+.++.++.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34554 456999999999764
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=70.99 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=51.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcCceecCCHHHH--HhcCCEEEEeccCc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVYTLQDL--LFQSDCVSLHCTLN 241 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~sLdel--L~~sDvVil~lPlt 241 (501)
.++++++++|+|.|.+|++++..|...|++|+++||+.... .....+... .+++++ +.++|+|++++|..
T Consensus 328 ~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~-~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKA-FPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccce-echhHhcccCCCCEEEEcCCCC
Confidence 35789999999999999999999999999999999875321 222222221 133333 57899999999965
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=68.31 Aligned_cols=93 Identities=9% Similarity=0.055 Sum_probs=62.0
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++.+++|.|||.|.||+.+++.|...|. +|++.+|+... ..++-... ..-+++.++||||.+...|....-++..
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~---~~~~~~~~-~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT---LPYRTVVR-EELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc---cchhhhhh-hhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 5899999999999999999999999995 69999998632 11110000 1114567999999874334344455666
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~ 269 (501)
+.++..++ -+|||.+=..
T Consensus 247 ~~~~~~~~-r~~iDLAvPR 264 (338)
T PRK00676 247 ESLADIPD-RIVFDFNVPR 264 (338)
T ss_pred HHHhhccC-cEEEEecCCC
Confidence 66555433 2777776443
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=66.90 Aligned_cols=88 Identities=10% Similarity=0.135 Sum_probs=65.6
Q ss_pred cCCeEEeeccchHHHHHHHHHH-hCCC-EEEEECCCCCch--hhhh----cCc--eecCCHHHHHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAK-AFGF-NVIFYDPYLPDG--IEKS----LGL--TRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~-afG~-~Vi~~dr~~~~~--~~~~----~gv--~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
..++|+|||.|.+++..++.+. .++. +|.+|+|+..+. .... .++ ..+.++++++.+||+|+.+.|.+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 3578999999999999999997 4774 699999986432 2221 233 33567899999999999998753
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.-+|..+. +|+|+.++.++.
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeCC
Confidence 46776554 689998887764
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0017 Score=67.09 Aligned_cols=114 Identities=24% Similarity=0.273 Sum_probs=81.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc---h-------hhh--hcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD---G-------IEK--SLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~---~-------~~~--~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||.|.||+.+|..+..-|++|..+|++... . ..+ +.| +....++. .+++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence 78999999999999999998877999999987321 0 000 011 11111222 6899
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV-NTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilI-NvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
||+|+=.++.+-+.++-+-++.=+..|++++|= |||+ +.-.+|.++++ +.=...++=.|.
T Consensus 83 ~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfN 143 (307)
T COG1250 83 ADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFN 143 (307)
T ss_pred CCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccC
Confidence 999999999998888888788888899999984 4544 66677777773 333334555443
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0022 Score=65.96 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=63.6
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhC----CCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAF----GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~af----G~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
++.||++.|||-+. +|+.+|.+|... ++.|+++..+. .++.+.+++||+|+.++.- .+
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~nl~~~~~~ADIvIsAvGk----p~ 216 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS-------------KNLKKECLEADIIIAALGQ----PE 216 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC-------------CCHHHHHhhCCEEEEccCC----cC
Confidence 58999999999986 589999999876 78999886321 3688999999999999873 46
Q ss_pred cccHHHHhcCCCCcEEEEcCCCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~ 269 (501)
+|..+. .|+|+++||++--.
T Consensus 217 ~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 217 FVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred ccCHHH---cCCCCEEEEecCcc
Confidence 777644 68999999998654
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00082 Score=60.99 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=75.0
Q ss_pred EEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCcee--------------cCCHHHHHhcCCEEEEeccCchh
Q psy7383 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTR--------------VYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~--------------~~sLdelL~~sDvVil~lPlt~~ 243 (501)
|.|+|.|.||..+|.+|+..|.+|..+++....+..++.|+.. ..+..+.....|+|++++... +
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence 6899999999999999999999999999876112222223221 111124677899999998744 4
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
+...+.. ....+++++.+|-.--| +-.++.|.+.+...++.++...
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~~ 125 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVTT 125 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEEe
Confidence 4555543 55667777788888777 4456777777766677655543
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0012 Score=57.44 Aligned_cols=106 Identities=23% Similarity=0.340 Sum_probs=69.1
Q ss_pred eEEeeccchHHHHHHHHHHhC--CCEEE-EECCCCCc--hhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhccc
Q psy7383 177 TLGIVGLGRIGSAVALRAKAF--GFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~af--G~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI~ 249 (501)
+|||||+|.+|+...+.+... +++|. ++|+.... ...+..++..+.++++++. +.|+|+++.|...... +-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~ 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence 699999999999999888766 56654 67887533 2345678887789999998 7899999998533222 22
Q ss_pred HHHHhcCCCCcEEEEcC-CCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGAFLVNTA-RGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gAilINva-RG~vVde~aL~~aL~~g~I~ 286 (501)
...++.=+ .+|+.-= --.+-+.+.|+++.++.+..
T Consensus 80 ~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 80 KKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp HHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 33333322 4555421 11334555666666665543
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0019 Score=65.95 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=51.3
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhc----C---ceecCCHHHHHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSL----G---LTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~----g---v~~~~sLdelL~~sDvVil~lPlt 241 (501)
+.+++|.|||.|.+|++++..|...|+ +|+++||+..+. ....+ . +....++.+.+.++|+||.+.|..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 678999999999999999999999998 799999975432 22211 1 111234556778899999998853
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0069 Score=65.67 Aligned_cols=156 Identities=13% Similarity=0.112 Sum_probs=89.3
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC---------Cc-hhh-----------------hhcCceecCCH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL---------PD-GIE-----------------KSLGLTRVYTL 224 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~---------~~-~~~-----------------~~~gv~~~~sL 224 (501)
+|.|+||.|.|+|++|+..|+.|..+|++|++..... +. .+. ...+.+.. +.
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~ 303 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EG 303 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CC
Confidence 6999999999999999999999999999999843311 00 000 00122322 34
Q ss_pred HHHH-hcCCEEEEeccCchhhhhcccHHHHhcCCC-Cc-EEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCC
Q psy7383 225 QDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQMRP-GA-FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVF 301 (501)
Q Consensus 225 delL-~~sDvVil~lPlt~~T~~lI~~~~l~~MK~-gA-ilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~ 301 (501)
++++ ..|||++-| .+.+.|+++...+++. +. +++--+.+ .+..++.. .|.++.|. .+=|+.-+----.
T Consensus 304 d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~-~L~~rgI~-~~PD~~aNAGGVi- 374 (444)
T PRK14031 304 ARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIK-VFQDAKIL-YAPGKAANAGGVS- 374 (444)
T ss_pred cccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHH-HHHHCCcE-EeChhhccCCCee-
Confidence 4543 479998766 3578999999999875 44 44444555 66666654 44454443 2333322211000
Q ss_pred CCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 302 QGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 302 ~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
-+-|--..| .-+..|..++..+++.+++.+...+.+
T Consensus 375 vs~~E~~qn---~~~~~W~~eeV~~~L~~~m~~~~~~v~ 410 (444)
T PRK14031 375 VSGLEMTQN---SIKLSWSSEEVDEKLKSIMKNIHEACV 410 (444)
T ss_pred eehhhhhcc---ccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000111 223455556666666666555554443
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0027 Score=65.87 Aligned_cols=118 Identities=20% Similarity=0.269 Sum_probs=72.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCchhh--h--h-----cC----ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPDGIE--K--S-----LG----LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~~~~--~--~-----~g----v~~~~sLdelL~~sDvVil~l 238 (501)
+..++|+|||.|.||..+|..+...| .+|..+|........ . . .+ +....+.+ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999998888 689999986532111 0 0 11 12123555 779999999998
Q ss_pred --cCch-hhh--------hccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH--cCCceEEE--Ee
Q psy7383 239 --TLNE-HNH--------HLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAALK--QGRIRAAA--LD 291 (501)
Q Consensus 239 --Plt~-~T~--------~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL~--~g~I~GAa--LD 291 (501)
|..+ .++ .++- .+.+....+.+++|+++-..=+-...+.+... ..++.|.+ ||
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 4332 111 1110 23444456889999996543233334434322 45666555 55
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0026 Score=64.29 Aligned_cols=106 Identities=21% Similarity=0.270 Sum_probs=63.1
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEEE-ECCCCCch-hhhhc--CceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVIF-YDPYLPDG-IEKSL--GLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi~-~dr~~~~~-~~~~~--gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+|||||+|.||+.+++.+... ++++.+ +++..... ..... ++..+.+++++-.+.|+|+.|.|.... . +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence 4799999999999999999875 566433 34332211 11111 455566888885568999999884321 1 2
Q ss_pred HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHcCCce
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDD---DSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde---~aL~~aL~~g~I~ 286 (501)
-....++.|.-++-.+-+.+.|. +.|.++.+++...
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 23333445544554544544443 4466666665543
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0018 Score=67.20 Aligned_cols=87 Identities=15% Similarity=0.253 Sum_probs=63.9
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCch--hhhh----cC--ceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPDG--IEKS----LG--LTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~~--~~~~----~g--v~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
-++|||||+|.+|+..++.+.. .+. +|.+|||+.... ..+. .+ +..+.+++++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4689999999999999998864 454 577899986431 1111 23 334568899987 99999998853
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.-+|..+. +|+|+.+..++.-
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs~ 225 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGAD 225 (326)
T ss_pred CcEecHHH---cCCCCEEEecCCC
Confidence 57777654 5899999989853
|
|
| >KOG2653|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.011 Score=61.95 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=114.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch---hhh-hcC--ceecCCHHHH---HhcCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG---IEK-SLG--LTRVYTLQDL---LFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~---~~~-~~g--v~~~~sLdel---L~~sDvVil~lPlt~~T~~ 246 (501)
..||+||++-|||.++-.....|+.|.+|+|..++- ++. ..+ +....+++|+ ++.--+|++.+....-...
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 468999999999999999999999999999987531 111 112 3334588887 4567788888776544444
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+| +++...|-+|-++|+-+....-|+..-.+.|.+..|...+.-|.-.|--.. ..|-+ +-|-+.+++.
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR-~GPSl----------MpGg~~~Awp 154 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGAR-YGPSL----------MPGGSKEAWP 154 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccc-cCCcc----------CCCCChHHHH
Confidence 55 678899999999999999999999999999999998878888886664322 23322 3467788888
Q ss_pred HHHHHHHHHHHHHHhCC
Q psy7383 327 ELREMAASEIRRAIVGR 343 (501)
Q Consensus 327 ~~~~~~~~ni~~~l~G~ 343 (501)
++..++..-....-.|+
T Consensus 155 ~ik~ifq~iaakv~~~e 171 (487)
T KOG2653|consen 155 HIKDIFQKIAAKVSDGE 171 (487)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 88776554433333444
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0026 Score=61.89 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=46.7
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
.+++|||- |.||+.+++.++..|+.|. +++||+|++|+|.. .+..++ +
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------~~~~DlVilavPv~-~~~~~i-----~ 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------IKKADHAFLSVPID-AALNYI-----E 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------ECCCCEEEEeCCHH-HHHHHH-----H
Confidence 37899988 9999999999999999885 35899999999954 233333 3
Q ss_pred cCCCCcEEEEcCCCC
Q psy7383 255 QMRPGAFLVNTARGG 269 (501)
Q Consensus 255 ~MK~gAilINvaRG~ 269 (501)
.+. .+++|++.-+
T Consensus 50 ~~~--~~v~Dv~SvK 62 (197)
T PRK06444 50 SYD--NNFVEISSVK 62 (197)
T ss_pred HhC--CeEEeccccC
Confidence 333 3789998744
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0037 Score=67.81 Aligned_cols=108 Identities=11% Similarity=0.083 Sum_probs=72.8
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEE-CCCC--------Cch-hh--------------hhcCceecCCHHH
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY-DPYL--------PDG-IE--------------KSLGLTRVYTLQD 226 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~-dr~~--------~~~-~~--------------~~~gv~~~~sLde 226 (501)
.+|+|+||.|.|||++|+.+|+.|..+|++|++. |.+- +.+ +. ...+.+.. +.++
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~ 306 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGS 306 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCcc
Confidence 3589999999999999999999999999999987 5211 101 00 00011222 3445
Q ss_pred HHh-cCCEEEEeccCchhhhhcccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 227 LLF-QSDCVSLHCTLNEHNHHLINEFTIKQMR--PGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 227 lL~-~sDvVil~lPlt~~T~~lI~~~~l~~MK--~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
++. +|||++-|. +.+.|+.+...+++ .-.+++-.+-+.+ +.+ -.+.|.++.|.
T Consensus 307 i~~~d~DVliPaA-----l~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~ 362 (445)
T PRK09414 307 PWSVPCDIALPCA-----TQNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL 362 (445)
T ss_pred ccccCCcEEEecC-----CcCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence 544 799998765 46888888777774 3456677777776 433 45677777765
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0035 Score=64.57 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=80.5
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhC----CCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAF----GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~af----G~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
+++||+|.|||-+. +|+.+|.+|... ++.|..+..+. .++.+.+++||+|+.++- -.+
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~~l~~~~~~ADIvIsAvG----kp~ 216 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT-------------DDLAAKTRRADIVVAAAG----VPE 216 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccC----CcC
Confidence 58999999999886 599999999765 89999875321 268899999999999875 246
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASC 325 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~ 325 (501)
+|..+. +|+|+++||++--.+.+.. +.| ++.| ||-.++=.. . --.+||=-+|.-.=+.
T Consensus 217 ~i~~~~---ik~gaiVIDvGin~~~~~~------~~g~kl~G---DVd~e~v~~-----~----a~~iTPVPGGVGpvT~ 275 (297)
T PRK14167 217 LIDGSM---LSEGATVIDVGINRVDADT------EKGYELVG---DVEFESAKE-----K----ASAITPVPGGVGPMTR 275 (297)
T ss_pred ccCHHH---cCCCCEEEEccccccCccc------ccCCceee---cCcHHHHHh-----h----ceEecCCCCCchHHHH
Confidence 787654 6899999999865432110 124 5665 775322111 1 1368998777655433
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0017 Score=63.17 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=50.5
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh--hcC-ceec-CCH-HHHHhcCCEEEEeccCc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK--SLG-LTRV-YTL-QDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~--~~g-v~~~-~sL-delL~~sDvVil~lPlt 241 (501)
.+|+|++|.|||.|.+|...++.|...|++|+++++........ ..+ +... ..+ ++.+.++|+|+.++...
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence 46999999999999999999999999999999999865433211 111 2111 112 34578899888876543
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0035 Score=64.56 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=86.7
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhC----CCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAF----GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~af----G~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
++.||+|.|||-+. +|+.+|.+|... ++.|+.+..+. .++++.+++||+|+.++. -.+
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T-------------~~l~~~~~~ADIvVsAvG----kp~ 220 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS-------------KNLARHCQRADILIVAAG----VPN 220 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC-------------cCHHHHHhhCCEEEEecC----CcC
Confidence 58999999999876 589999999876 78998875331 268889999999999885 346
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC--ceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR--IRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEAS 324 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~--I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea 324 (501)
+|..+. .|+|+++||++--.+.+. .++|+ +.| ||-.++= .+. --.+||=-+|.-.-+
T Consensus 221 ~i~~~~---ik~gavVIDvGin~~~~~------~~~g~~~~~G---DVdfe~v--------~~~-a~~iTPVPGGVGp~T 279 (297)
T PRK14168 221 LVKPEW---IKPGATVIDVGVNRVGTN------ESTGKAILSG---DVDFDAV--------KEI-AGKITPVPGGVGPMT 279 (297)
T ss_pred ccCHHH---cCCCCEEEecCCCccCcc------ccCCCcceec---cccHHHH--------Hhh-ccEecCCCCCchHHH
Confidence 777655 689999999997543211 12344 544 6542111 010 136899877766544
Q ss_pred HHHHHHHHHHHHHHH
Q psy7383 325 CTELREMAASEIRRA 339 (501)
Q Consensus 325 ~~~~~~~~~~ni~~~ 339 (501)
..-+.+-+++..++|
T Consensus 280 ~a~L~~N~~~a~~~~ 294 (297)
T PRK14168 280 IAMLMRNTLKSAKFH 294 (297)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0019 Score=56.93 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=55.1
Q ss_pred eEEeec-cchHHHHHHHHHHhC-CCEEEEE-CCCCC--chhhhhcC-ce-e-cC--CHHHH-HhcCCEEEEeccCchhhh
Q psy7383 177 TLGIVG-LGRIGSAVALRAKAF-GFNVIFY-DPYLP--DGIEKSLG-LT-R-VY--TLQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 177 tVGIVG-lG~IG~~iA~~L~af-G~~Vi~~-dr~~~--~~~~~~~g-v~-~-~~--sLdel-L~~sDvVil~lPlt~~T~ 245 (501)
+++|+| .|.+|+.+++.+... ++++.++ ++... +......+ +. . .. +.+++ ..++|+|++++|... +.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-SK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH-HH
Confidence 589999 599999999999874 7887766 43321 11111111 11 0 01 11222 258999999999653 33
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.++. ..+..+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3322 33556799999999984
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0032 Score=67.02 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=67.5
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CC--CEEEEECCCCCch--hh----hhc-C---ceecCCHHHHHhcCCEEEEeccCc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FG--FNVIFYDPYLPDG--IE----KSL-G---LTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG--~~Vi~~dr~~~~~--~~----~~~-g---v~~~~sLdelL~~sDvVil~lPlt 241 (501)
-++++|||.|..++.-++.+.. +. -+|.+|||+.... .. ..+ + +..+.+.++++++||||+.+.+.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4789999999999999988876 42 4899999986432 11 122 2 445678999999999999988754
Q ss_pred h---hhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 242 E---HNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 242 ~---~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
. .+.-+|..+. +|+|+.++.++.-+
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence 3 3457776654 57999888777644
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0027 Score=66.00 Aligned_cols=87 Identities=9% Similarity=0.128 Sum_probs=62.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHh-CC-CEEEEECCCCCch--hhh----hcCce--ecCCHHHHHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKA-FG-FNVIFYDPYLPDG--IEK----SLGLT--RVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~a-fG-~~Vi~~dr~~~~~--~~~----~~gv~--~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
..++|+|||.|.+|+..+..+.. .+ .+|.+|+|+.... ..+ ..++. ...++++++.++|+|+++.|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 35789999999999998888874 55 4799999986431 212 12332 3468899999999999998753
Q ss_pred hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINva 266 (501)
.-+|..+. +|+|+.++.++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 46676544 57888776654
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.003 Score=67.36 Aligned_cols=102 Identities=20% Similarity=0.095 Sum_probs=67.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCch-hhhhc----------CceecCCHHHHHhcCCEEEEeccCchh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPDG-IEKSL----------GLTRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~~-~~~~~----------gv~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
++|.|||+|.||+.+|..|..-| .+|++.||+.... ..... .+.....+.+++++.|+|+.++|-.-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 57999999999999999999988 9999999985421 11111 12223356788999999999998442
Q ss_pred hhhcccHHHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 244 NHHLINEFTI-KQMRPGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 244 T~~lI~~~~l-~~MK~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
+...+ +.++-|.-.|+++-.+-- ..++-+..++..
T Consensus 81 -----~~~i~ka~i~~gv~yvDts~~~~~-~~~~~~~a~~Ag 116 (389)
T COG1748 81 -----DLTILKACIKTGVDYVDTSYYEEP-PWKLDEEAKKAG 116 (389)
T ss_pred -----hHHHHHHHHHhCCCEEEcccCCch-hhhhhHHHHHcC
Confidence 22333 445667777777654332 234444444444
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.002 Score=62.83 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=61.4
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh---hhcCceec---CCHHHHHhcCCEEEEeccCchhh
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE---KSLGLTRV---YTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~---~~~gv~~~---~sLdelL~~sDvVil~lPlt~~T 244 (501)
.+|.|++|.|||.|.+|..-++.|..+|++|+++++....+.. ....+... .. .+.+..+|+|+.+.. .++
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~-d~~- 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATD-DEE- 81 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCC-CHH-
Confidence 3589999999999999999999999999999999987653321 11122211 12 345778888877643 222
Q ss_pred hhcccHHHHhcCCCCcEEEEc
Q psy7383 245 HHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINv 265 (501)
+|.......+.-.++||+
T Consensus 82 ---ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 82 ---LNRRVAHAARARGVPVNV 99 (205)
T ss_pred ---HHHHHHHHHHHcCCEEEE
Confidence 344555556666677776
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0047 Score=66.33 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=73.5
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEE-EECCCC--------Cc-hhhh---h-------cCceecCCHHHH-Hhc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVI-FYDPYL--------PD-GIEK---S-------LGLTRVYTLQDL-LFQ 230 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi-~~dr~~--------~~-~~~~---~-------~gv~~~~sLdel-L~~ 230 (501)
+|+|+||.|.|||++|+.+|+.|...|++|+ +.|.+- +. .+.+ . .+.+.+ +.+++ ..+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~ 281 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEP 281 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceecc
Confidence 6899999999999999999999999999999 445431 11 1101 0 011222 33443 458
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
|||++-|. ..+.|+++...++| -.+++--+-+.+ +.+ -.+.|+++.|.
T Consensus 282 ~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~ 329 (410)
T PLN02477 282 CDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV 329 (410)
T ss_pred ccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence 99997763 56789999888885 456777788887 433 45778888776
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.02 Score=62.15 Aligned_cols=156 Identities=14% Similarity=0.129 Sum_probs=95.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEE--------ECCCC-Cchhh------------------hhc-CceecCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF--------YDPYL-PDGIE------------------KSL-GLTRVYT 223 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~--------~dr~~-~~~~~------------------~~~-gv~~~~s 223 (501)
+|.|+||.|-|+|++|+.+|+.|..+|++|++ ||+.- +.+.. ..+ +.+.+ +
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~ 303 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-A 303 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-C
Confidence 68999999999999999999999999999999 77542 11110 011 33333 3
Q ss_pred HHHHH-hcCCEEEEeccCchhhhhcccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC
Q psy7383 224 LQDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQMR--PGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300 (501)
Q Consensus 224 LdelL-~~sDvVil~lPlt~~T~~lI~~~~l~~MK--~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~ 300 (501)
.++++ .+|||++-| .+.+.|+++....+. .-.+++--+-+ .++.++- +.|.++.|. ++=|+.-+----.
T Consensus 304 ~~~~~~~~cDVliPc-----Al~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aNAGGVi 375 (445)
T PRK14030 304 GKKPWEQKVDIALPC-----ATQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVNAGGVA 375 (445)
T ss_pred CccceeccccEEeec-----cccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceecCCCee
Confidence 34554 469998766 368899988888873 23466666677 5665544 666777665 3444432221000
Q ss_pred CCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 301 FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 301 ~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
-+-| +-+-=.-|.-|..++..+++.+++.+...+.+
T Consensus 376 -vs~~---E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~ 411 (445)
T PRK14030 376 -TSGL---EMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCV 411 (445)
T ss_pred -eehh---hhhccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 0001 11111245666667777777766666655554
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0023 Score=66.32 Aligned_cols=90 Identities=24% Similarity=0.285 Sum_probs=57.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC--CchhhhhcCceec-CC------HHHHHhcCCEEEEeccCchhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL--PDGIEKSLGLTRV-YT------LQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~--~~~~~~~~gv~~~-~s------LdelL~~sDvVil~lPlt~~T 244 (501)
.|++|||+|+|.+|.--.+.+++||++|+++|+.. +++..+.+|.+.+ .+ .+++...-|.++-+++.- +
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 79999999999999999999999999999999875 2344455665422 11 123444455555444311 1
Q ss_pred hhcccHHHHhcCCCCcEEEEcC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINva 266 (501)
.+-+ +..+..||.+..+|-++
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLVG 279 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEEe
Confidence 2222 34556666666555553
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.011 Score=60.71 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=77.0
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh--------
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH-------- 246 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~-------- 246 (501)
+++++|||-=.=-..++++|.+.|++|.++.-.. ......|++.+.+.++++.++|+|++-+|.+.+...
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~--~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~ 79 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQ--LDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNE 79 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccc--cccccCCceeeccHHHHhccCCEEEECCccccCCceeecccccc
Confidence 6899999988888999999999999999854221 111233666666778999999999999887544311
Q ss_pred --cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 247 --LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 247 --lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
-++++.+++||++.+++ ++.+ +.. +-+.+++.+|. .+|..
T Consensus 80 ~~~~~~~~l~~l~~~~~v~-~G~~---~~~-~~~~~~~~gi~--~~~~~ 121 (296)
T PRK08306 80 KLVLTEELLELTPEHCTIF-SGIA---NPY-LKELAKETNRK--LVELF 121 (296)
T ss_pred CCcchHHHHHhcCCCCEEE-EecC---CHH-HHHHHHHCCCe--EEEEe
Confidence 13678999999998544 3333 222 44667788887 34544
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0059 Score=63.40 Aligned_cols=88 Identities=13% Similarity=0.208 Sum_probs=65.6
Q ss_pred CCeEEeeccchHHHHHHHHHHhC-C-CEEEEECCCCCchh--h---hhcC--ceecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAF-G-FNVIFYDPYLPDGI--E---KSLG--LTRVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~af-G-~~Vi~~dr~~~~~~--~---~~~g--v~~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
-++++|+|.|..++.-++.+... . -+|.+|||+..... . +..+ +..+.+.++++++||+|+.+.+ .+.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~---s~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTP---SRE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecC---CCC
Confidence 47899999999999988887643 2 47999999865321 1 1123 3345689999999999998866 446
Q ss_pred hcccHHHHhcCCCCcEEEEcCCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG 268 (501)
-+|+.+. +|+|+.++.++.-
T Consensus 205 P~~~~~~---l~~G~hi~~iGs~ 224 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVGAD 224 (315)
T ss_pred ceeCHHH---cCCCcEEEecCCC
Confidence 7777654 6899999999853
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0068 Score=53.85 Aligned_cols=100 Identities=19% Similarity=0.278 Sum_probs=67.8
Q ss_pred CeEEeec----cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVG----LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVG----lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
|+|+||| -+..|..+.+.|+..|++|+..++...+ -.|...+.+++|.=...|++++++|.. .+..++ +
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v--~ 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIV--D 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHH--H
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccCCCCCCCEEEEEcCHH-HHHHHH--H
Confidence 6899999 7899999999999999999999987532 245566678888437899999999843 334444 2
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
.+..+..+.+++..+ ..++++.+.+++..|.
T Consensus 74 ~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 74 EAAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 334446778888888 6778888888888776
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0041 Score=62.39 Aligned_cols=116 Identities=15% Similarity=0.247 Sum_probs=73.9
Q ss_pred EEeecc-chHHHHHHHHHHhCC----CEEEEECCCCCc--hhhh----------hcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 178 LGIVGL-GRIGSAVALRAKAFG----FNVIFYDPYLPD--GIEK----------SLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 178 VGIVGl-G~IG~~iA~~L~afG----~~Vi~~dr~~~~--~~~~----------~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
|+|||. |.+|..+|..|...| .+|..||..... .... ...+....++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998878 799999976532 1100 01223334567889999999996521
Q ss_pred c-----------hhhhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHcCCceEEE-EecC
Q psy7383 241 N-----------EHNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAA--LKQGRIRAAA-LDVH 293 (501)
Q Consensus 241 t-----------~~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~a--L~~g~I~GAa-LDVf 293 (501)
. .++..++. .+.+.+..+++++||++-.-=+-...+.+. +...++.|.+ +|..
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 0 01111221 234444568999999964322233344444 4678888988 8864
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0033 Score=60.99 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=34.0
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46999999999999999999999999998 79999865
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0098 Score=64.34 Aligned_cols=111 Identities=19% Similarity=0.169 Sum_probs=72.6
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch------hhhhcCceec--CCHHHHHhcCCEEEEeccCchhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG------IEKSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~------~~~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T 244 (501)
+.+++|+|+|+|..|+++|+.|+..|++|.++|...... ..+..|+... ....+.+.++|+|++. |.-+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 678999999999999999999999999999999764311 1233465432 1234556889999887 532221
Q ss_pred hh-----------cccH-HHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 245 HH-----------LINE-FTI-KQMRPGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 245 ~~-----------lI~~-~~l-~~MK~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
.- ++.+ +.+ +..+...+-|--+.|+.-..+-|...|+...
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 11 2221 222 2233345666667788777777777777533
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0095 Score=63.65 Aligned_cols=148 Identities=16% Similarity=0.239 Sum_probs=94.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC------------------c--hhhhhcCceecCCHHHHHh-c
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP------------------D--GIEKSLGLTRVYTLQDLLF-Q 230 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~------------------~--~~~~~~gv~~~~sLdelL~-~ 230 (501)
+|+|+||.|=|+|+.|+.+|+.|...|.+|+++|-+.. + ......+.+.+ +-++++. +
T Consensus 204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i-~~~e~~~~~ 282 (411)
T COG0334 204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYI-TNEELLEVD 282 (411)
T ss_pred CcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEc-ccccccccc
Confidence 48999999999999999999999999999999875432 0 11112344444 3356654 7
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPN 310 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pN 310 (501)
|||++=| .+.+.|+.+...++|-. +++--+.+.+- .++--..++.|-+. +=|+.-+ .=-
T Consensus 283 cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erGIl~--~PD~laN------------AGG 341 (411)
T COG0334 283 CDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERGILV--VPDILAN------------AGG 341 (411)
T ss_pred CcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCCCEE--cChhhcc------------CcC
Confidence 9998654 47899999999999877 77888888754 44444444555433 3333221 111
Q ss_pred eEEec--------CCCCCcHHHHHHHHHHHHHHHHHHHh
Q psy7383 311 ILCTP--------HAAFYSEASCTELREMAASEIRRAIV 341 (501)
Q Consensus 311 VilTP--------HiAg~T~ea~~~~~~~~~~ni~~~l~ 341 (501)
|+++= -..|..++..+++..++.+..+.+.+
T Consensus 342 V~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~ 380 (411)
T COG0334 342 VIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQ 380 (411)
T ss_pred eeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 12244566677777776666665553
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0024 Score=66.05 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=55.4
Q ss_pred CeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCc--hhh---hhcC--ceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPD--GIE---KSLG--LTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~--~~~---~~~g--v~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
++++|||.|..++.-++.+.. +.. +|.+|+|+... .+. ...+ +..+.+.++++++||+|+.+.+.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999998888754 554 79999998632 111 1123 345678999999999999987754322 6
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCc
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~v 270 (501)
+++.+ .+|+|+.++.++....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 66654 5789999999987544
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.031 Score=59.66 Aligned_cols=124 Identities=14% Similarity=0.153 Sum_probs=83.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC--------------chhh---hh---cC-ceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP--------------DGIE---KS---LG-LTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~--------------~~~~---~~---~g-v~~~~sLdelL~~sDvV 234 (501)
++|.|+|.|-+|...+..|..+|++|+++|.... ++++ ++ .| +....+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 5799999999999999999999999999985432 1111 11 11 33445788899999999
Q ss_pred EEeccCchhhhhcc--------cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe-cCCCCCCCC
Q psy7383 235 SLHCTLNEHNHHLI--------NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD-VHESEPYNV 300 (501)
Q Consensus 235 il~lPlt~~T~~lI--------~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD-Vfe~EPl~~ 300 (501)
+++++-...-.+-+ -++..+.++..+++|+=|.-.+=..+.+.+.+.+..-.. -.+ |+.+|=|..
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLRE 154 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLRE 154 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcC
Confidence 99998543323322 245667788779999999877666666665555544211 112 255665543
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0054 Score=62.50 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=49.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhcC----ceecC---CHHHHHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSLG----LTRVY---TLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~g----v~~~~---sLdelL~~sDvVil~lPlt 241 (501)
++++++.|||.|.++++++..|...|+ +|++++|+..+. +...++ +.... ++.+.+.++|+||.++|..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 678999999999999999999999997 699999975432 222111 11121 2335567889999988864
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0099 Score=53.22 Aligned_cols=101 Identities=26% Similarity=0.265 Sum_probs=58.5
Q ss_pred eEEeecc-chHHHHHHHHHHh-CCCEE-EEECCCCCch----hh-----hhcCceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 177 TLGIVGL-GRIGSAVALRAKA-FGFNV-IFYDPYLPDG----IE-----KSLGLTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 177 tVGIVGl-G~IG~~iA~~L~a-fG~~V-i~~dr~~~~~----~~-----~~~gv~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
+|+|+|+ |+||+.+++.+.. -++++ -++|+..+.. .. ...++....++++++.++|+|+-.. +++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~ 79 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA 79 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence 7999999 9999999999988 78884 4567665211 10 1344555678999999999998765 3332
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
..-.-+..+ +.+.-+|-...|---++.+.++.+.+
T Consensus 80 ~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 80 VYDNLEYAL---KHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHHHHHHH---HHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred hHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 222212222 33666666556643333344444333
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0073 Score=56.49 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=48.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceec-CCH-HHHHhcCCEEEEecc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV-YTL-QDLLFQSDCVSLHCT 239 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~-~sL-delL~~sDvVil~lP 239 (501)
.+|+|++|.|||-|.+|...++.|...|++|.++++...++......+... ..+ ++-+.++|+|+.++.
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCC
Confidence 469999999999999999999999999999999987654433221111110 112 223677888877654
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0076 Score=63.42 Aligned_cols=89 Identities=17% Similarity=0.294 Sum_probs=63.0
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCch--hhh---hcC--ceecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPDG--IEK---SLG--LTRVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~~--~~~---~~g--v~~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
-++++|||.|..++.-++.+.. +.. +|.+|+|+.... ..+ ..+ +..+.++++++++||+|+.+.+.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 3789999999999888776643 444 699999986432 111 112 444578999999999999988632 222
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
-+|..+ .+|+|+.++-++.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 456654 4599998888774
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.012 Score=59.20 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=47.0
Q ss_pred CeEEeecc-chHHHHHHHHHHhC-CCEEEE-ECCCCCchh-hhhcCceecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAF-GFNVIF-YDPYLPDGI-EKSLGLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~af-G~~Vi~-~dr~~~~~~-~~~~gv~~~~sLdelL~~sDvVil~lP 239 (501)
.+|+|+|+ |.||+.+++.+... ++++.+ +|+...... ....++....++++++.++|+|+.+++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998764 788665 776543211 123345445689999989999997775
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0095 Score=61.43 Aligned_cols=88 Identities=10% Similarity=0.150 Sum_probs=64.7
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCch--hhh----hcC--ceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPDG--IEK----SLG--LTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~~--~~~----~~g--v~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
-++++|||.|..|+.-++.+.. +.. +|.+|||+.... +.+ ..+ +..+.++++++.+||+|+.+.+ .+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~---s~ 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITN---SD 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecC---CC
Confidence 4789999999999988888765 343 699999986432 111 123 4455789999999999998876 34
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.-+|..+. +|+|+.++-++.-
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs~ 214 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGSN 214 (301)
T ss_pred CcEecHHH---cCCCceEEecCCC
Confidence 57777664 5789887777753
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.004 Score=65.21 Aligned_cols=83 Identities=25% Similarity=0.275 Sum_probs=57.6
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc------------h---------h-----hhh--cCc--e
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD------------G---------I-----EKS--LGL--T 219 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~------------~---------~-----~~~--~gv--~ 219 (501)
..|++++|.|||+|.+|..+|+.|...|. ++..+|+..-+ . . .++ ..+ +
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 56999999999999999999999999998 78888875310 0 0 000 011 1
Q ss_pred ec------CCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 220 RV------YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 220 ~~------~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
.. .+++++++++|+|+.++ .+.+++.+||+-..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~ 139 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK 139 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence 11 23567788899888876 567777777754443
|
|
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.035 Score=60.40 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=88.6
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEE-EECCCC--------Cc-hh---h----------hh-----cCceecC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVI-FYDPYL--------PD-GI---E----------KS-----LGLTRVY 222 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi-~~dr~~--------~~-~~---~----------~~-----~gv~~~~ 222 (501)
.+|.|+||.|=|+|++|+.+|+.|..+|++|+ +.|..- +. .+ . .. .+.+.+
T Consensus 233 ~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~- 311 (454)
T PTZ00079 233 DSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV- 311 (454)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-
Confidence 46999999999999999999999999999999 444330 11 11 0 00 022322
Q ss_pred CHHHHH-hcCCEEEEeccCchhhhhcccHHHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC
Q psy7383 223 TLQDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQM-RPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV 300 (501)
Q Consensus 223 sLdelL-~~sDvVil~lPlt~~T~~lI~~~~l~~M-K~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~ 300 (501)
+-++++ -.|||++-| .+.+.|+.+..+.+ +.++.+|--+--..+..+| .+.|+++.|. ++=|..-+----.
T Consensus 312 ~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA-~~~L~~~GI~-~~PD~~aNAGGV~ 384 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEA-THLFKKNGVI-FCPGKAANAGGVA 384 (454)
T ss_pred CCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCCCHHH-HHHHHHCCcE-EEChhhhcCCCee
Confidence 223333 479998766 36888998887766 4455555444433445444 4566666665 2333322211000
Q ss_pred CCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 301 FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 301 ~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
-+-|--..|.. +..|.-++..+++.+++.+...+.+
T Consensus 385 -vS~~E~~Qn~~---~~~W~~eeV~~~L~~~M~~~~~~~~ 420 (454)
T PTZ00079 385 -ISGLEMSQNAA---RLQWTAEEVDEKLREIMKSIFEACV 420 (454)
T ss_pred -eehHHhhhhhc---ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 01111112222 4556556666666655544444443
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0034 Score=62.92 Aligned_cols=156 Identities=18% Similarity=0.240 Sum_probs=91.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEE--------CCCC-C-chhhh---hcC-------------ceecCCHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY--------DPYL-P-DGIEK---SLG-------------LTRVYTLQ 225 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~--------dr~~-~-~~~~~---~~g-------------v~~~~sLd 225 (501)
+++|+||.|-|+|++|+.+|+.|...|++|++. |+.. + +.+.+ ..+ .+.+ +-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 107 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYI-PND 107 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEE-CHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEe-ccc
Confidence 489999999999999999999999999998876 4331 0 01111 111 1111 222
Q ss_pred -HHH-hcCCEEEEeccCchhhhhcccHHHHh-cCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCC-
Q psy7383 226 -DLL-FQSDCVSLHCTLNEHNHHLINEFTIK-QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVF- 301 (501)
Q Consensus 226 -elL-~~sDvVil~lPlt~~T~~lI~~~~l~-~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~- 301 (501)
+++ .+|||++.|. ..+.|+++... .+|.++-+|--+--..+..++.. .|+++.|. .+=|..-+----..
T Consensus 108 ~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~-viPD~~aNaGGvi~s 180 (244)
T PF00208_consen 108 DEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL-VIPDFLANAGGVIVS 180 (244)
T ss_dssp CHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E-EE-HHHHTTHHHHHH
T ss_pred cccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE-EEcchhhcCCCeEee
Confidence 565 5899999883 46788888888 88767655555444445566665 88888876 34454322100000
Q ss_pred CCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 302 QGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 302 ~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
...+.. | ..+.-|..++..+++.+.+.++..+.+
T Consensus 181 ~~E~~~--~---~~~~~~~~~~v~~~l~~~m~~~~~~v~ 214 (244)
T PF00208_consen 181 YFEWLQ--N---LQGLFWTEEEVFEKLEEIMDRAFKRVL 214 (244)
T ss_dssp HHHHHH--H---HHTSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcc--h---hhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000111 1 234455556666666666655555444
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.058 Score=55.86 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=63.9
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC---chh----hhhcC--ceecCCHHHHHhcCCEEEEec----
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP---DGI----EKSLG--LTRVYTLQDLLFQSDCVSLHC---- 238 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~---~~~----~~~~g--v~~~~sLdelL~~sDvVil~l---- 238 (501)
+.|++|++||- +++.++++..+..+|++|....|..- ... .+..| +....+++++++++|+|..-.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~ 229 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM 229 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence 78899999997 78999999999999999999987531 111 22334 344568999999999998742
Q ss_pred cCch---h-----hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 239 TLNE---H-----NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 239 Plt~---~-----T~~lI~~~~l~~MK~gAilINva 266 (501)
.... + ...-++++.++.+|++++|.-+.
T Consensus 230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl 265 (304)
T PRK00779 230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL 265 (304)
T ss_pred ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence 1000 0 12234566666666666665543
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.024 Score=53.02 Aligned_cols=93 Identities=20% Similarity=0.313 Sum_probs=67.4
Q ss_pred cCCeEEeec--cchHHHHHHHHHHhCCCEEEEECCCC---Cc--hhh-------hhcC--ceecCCHHHHHhcCCEEEEe
Q psy7383 174 RGDTLGIVG--LGRIGSAVALRAKAFGFNVIFYDPYL---PD--GIE-------KSLG--LTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 174 ~gktVGIVG--lG~IG~~iA~~L~afG~~Vi~~dr~~---~~--~~~-------~~~g--v~~~~sLdelL~~sDvVil~ 237 (501)
.|+||++|| .+++.++++..|..||++|.+..|.. .. ... +..| +....+++|.++++|||..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 378999999 48999999999999999999998764 11 111 1112 34557999999999999876
Q ss_pred ccC----chh-------hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 238 CTL----NEH-------NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 238 lPl----t~~-------T~~lI~~~~l~~MK~gAilINva 266 (501)
.-- .+. ....++++.++.+|++++|.-+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 543 111 11457899999999999998885
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.015 Score=60.36 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=45.5
Q ss_pred CeEEeeccchHHHH-HHHHHHhC-CCEEE-EECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSA-VALRAKAF-GFNVI-FYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~~L~af-G~~Vi-~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+|.||+. .+..++.. ++++. ++|+..........+...+.+++++++ +.|+|++++|..
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~ 75 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPND 75 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence 47999999999985 56666554 78876 477664322211123445579999996 579999999853
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0074 Score=61.66 Aligned_cols=36 Identities=17% Similarity=0.413 Sum_probs=33.3
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~ 208 (501)
+.+|++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 6789999999999999999999999996 99999875
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.011 Score=60.44 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=64.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchh--h----hh---cC----ceecCCHHHHHhcCCEEEEecc--
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGI--E----KS---LG----LTRVYTLQDLLFQSDCVSLHCT-- 239 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~--~----~~---~g----v~~~~sLdelL~~sDvVil~lP-- 239 (501)
++|+|||.|.+|..+|..+...|. +|..+|....... . .. .+ +....+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence 589999999999999999988765 9999998543211 1 00 00 1112345 45899999999863
Q ss_pred Cch---------hhhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHcCCceEEE
Q psy7383 240 LNE---------HNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAA--LKQGRIRAAA 289 (501)
Q Consensus 240 lt~---------~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~a--L~~g~I~GAa 289 (501)
..+ ++..++. .+.+...-+.+++|+++-..=+-...+.+. +...++.|.+
T Consensus 82 ~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g 144 (307)
T PRK06223 82 RKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA 144 (307)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence 211 1112221 122333346678888864432333333332 2224666663
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.014 Score=60.67 Aligned_cols=116 Identities=20% Similarity=0.227 Sum_probs=69.6
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchhhh------h---c----CceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGIEK------S---L----GLTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~~~------~---~----gv~~~~sLdelL~~sDvVil~l 238 (501)
+..++|+|||.|.||..+|..+...|. +|..+|......... . . .+....+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 556899999999999999999988884 899999875421100 0 1 12222355 5679999999976
Q ss_pred cCc----------------hhhhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH--cCCceEEE
Q psy7383 239 TLN----------------EHNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAALK--QGRIRAAA 289 (501)
Q Consensus 239 Plt----------------~~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL~--~g~I~GAa 289 (501)
-.. .++..++. .+.+....+.+++||++-..=+-...+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 321 11222221 12334445788999998543222333433322 34566655
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.016 Score=60.71 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=66.8
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCch--h----hhhcC--ceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPDG--I----EKSLG--LTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~~--~----~~~~g--v~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
-++++|||.|..+..-++.++. |+. +|.+|+|+.... . .+..+ +..+.+.+++++.||+|+.+.|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 3689999999999999998865 444 799999986432 1 12233 3567789999999999999988653
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaR 267 (501)
-+|..+. +|+|+.+..++-
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 7776655 569999999985
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.02 Score=61.15 Aligned_cols=89 Identities=26% Similarity=0.359 Sum_probs=64.0
Q ss_pred cccCCeEEeecc----------chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 172 RIRGDTLGIVGL----------GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 172 ~L~gktVGIVGl----------G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
.+.+++|+|+|+ -.-...+++.|...|.+|.+|||.......+.. ..+.++++.++++|+|+++....
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~--~~~~~~~~~~~~ad~~v~~t~~~ 387 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGL--PLIDDLEEALKGADALVILTDHD 387 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhc--ccCCCHHHHHhCCCEEEEecCCH
Confidence 378999999998 457789999999999999999998654322222 22468899999999999987643
Q ss_pred hhhhhcccHHHHh-cCCCCcEEEEc
Q psy7383 242 EHNHHLINEFTIK-QMRPGAFLVNT 265 (501)
Q Consensus 242 ~~T~~lI~~~~l~-~MK~gAilINv 265 (501)
+-+. ++-+.+. .|+ ..++||+
T Consensus 388 -~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 388 -EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred -HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 2232 3444444 455 4578775
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.089 Score=54.45 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=63.4
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC---chh-------hhhcC--ceecCCHHHHHhcCCEEEEec-
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP---DGI-------EKSLG--LTRVYTLQDLLFQSDCVSLHC- 238 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~---~~~-------~~~~g--v~~~~sLdelL~~sDvVil~l- 238 (501)
+.|.+|++||- .++-++++..+..||++|.+..|..- ... .+..| +....++++.++++|+|..-+
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 78999999987 78889999999999999999887531 111 12234 344578999999999998743
Q ss_pred -cCch-----h-----hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 239 -TLNE-----H-----NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 239 -Plt~-----~-----T~~lI~~~~l~~MK~gAilINva 266 (501)
.... + ....++++.++.+|++++|.-+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 1110 0 11245666666666666665543
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.012 Score=61.06 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=59.1
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhhhh--------cCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIEKS--------LGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~~~--------~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
++++|+|||.|.+|..+|-.|...|. ++..+|..... +.... .......+-.+.+++||+|+++.-..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 56799999999999999999988887 89999986542 11110 01111112235589999999976431
Q ss_pred h---hhh--------hccc--HHHHhcCCCCcEEEEcCC
Q psy7383 242 E---HNH--------HLIN--EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~---~T~--------~lI~--~~~l~~MK~gAilINvaR 267 (501)
. +++ .++. .+.+..-.+.+++|+++-
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 1 122 1121 122333347889999984
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.015 Score=59.70 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=59.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCCch--hhhhc-------C--ceecCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPDG--IEKSL-------G--LTRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~~--~~~~~-------g--v~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||.|.+|+.+|..|...| .+|..+|+..... ....+ + ........+.+++||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 47999999999999999999888 4899999875431 11110 1 1111122345899999999886421
Q ss_pred ---hhh--------hccc--HHHHhcCCCCcEEEEcCC
Q psy7383 243 ---HNH--------HLIN--EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 243 ---~T~--------~lI~--~~~l~~MK~gAilINvaR 267 (501)
+++ .+|. .+.+....+.+++|+++-
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 111 1121 234455677899999973
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.01 Score=58.44 Aligned_cols=92 Identities=24% Similarity=0.324 Sum_probs=61.3
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhh-------hcC-------------------cee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEK-------SLG-------------------LTR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~-------~~g-------------------v~~- 220 (501)
..|.+++|.|||+|.+|..+|+.|...|. +++.+|...-+ ...+ ..| ++.
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 67777743210 0000 011 111
Q ss_pred ---c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
+ .++++++.++|+|+.++- +.+++.++++...+. +.-+|.++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence 1 124567888999888764 667777777655443 45566664
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.019 Score=59.01 Aligned_cols=112 Identities=24% Similarity=0.222 Sum_probs=74.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhh-hhcCcee----------c-CCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIE-KSLGLTR----------V-YTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~-~~~gv~~----------~-~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||.|.||..+|-+|...|.+|..++|.... +.. +..|+.. . ..-.+.+...|+|++++...
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 57999999999999999999999999999986421 111 1112210 0 01112346789999998744
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEE
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAAL 290 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaL 290 (501)
++...+ +.....+.+++.+|-.--| +-.++.+.+.+...++.++..
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence 344433 4556667889998888777 344566777776666665443
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.028 Score=61.58 Aligned_cols=103 Identities=15% Similarity=0.242 Sum_probs=72.3
Q ss_pred cccCCeEEeecc----------chHHHHHHHHHHhCCCEEEEECCCCCchhh-hhc----------------------Cc
Q psy7383 172 RIRGDTLGIVGL----------GRIGSAVALRAKAFGFNVIFYDPYLPDGIE-KSL----------------------GL 218 (501)
Q Consensus 172 ~L~gktVGIVGl----------G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~-~~~----------------------gv 218 (501)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||....... ... .+
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 488999999998 557889999999999999999998543211 111 12
Q ss_pred eecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHH
Q psy7383 219 TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 219 ~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~ 277 (501)
+.+.++++.++++|+|+++.... +-+.+--++..+.|++..++||+ |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCCh-HhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 44456778999999999987643 33333223445668766689985 54 45765553
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.01 Score=52.62 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=51.5
Q ss_pred eEEeec-cchHHHHHHHHHHh-CCCEEEE-ECCCCCch--hhhhc----Cceec---CCHHHHHhcCCEEEEeccCchhh
Q psy7383 177 TLGIVG-LGRIGSAVALRAKA-FGFNVIF-YDPYLPDG--IEKSL----GLTRV---YTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 177 tVGIVG-lG~IG~~iA~~L~a-fG~~Vi~-~dr~~~~~--~~~~~----gv~~~---~sLdelL~~sDvVil~lPlt~~T 244 (501)
||+||| .|.+|+.+.++|.. ..++++. ++++...+ ..... +.... ..-.+.+.++|+|++|+|... +
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence 699999 99999999999976 4556444 44443221 11111 11111 112244599999999988432 2
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG 268 (501)
..+. ... ++.|..+|+.+.-
T Consensus 80 ~~~~-~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 KELA-PKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp HHHH-HHH---HHTTSEEEESSST
T ss_pred HHHH-HHH---hhCCcEEEeCCHH
Confidence 2221 222 5788899998753
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.089 Score=54.56 Aligned_cols=94 Identities=18% Similarity=0.116 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCCEEEEECCCCCc------hhh-------------hhcC-------------ceecCC--HHHHHhcC
Q psy7383 186 IGSAVALRAKAFGFNVIFYDPYLPD------GIE-------------KSLG-------------LTRVYT--LQDLLFQS 231 (501)
Q Consensus 186 IG~~iA~~L~afG~~Vi~~dr~~~~------~~~-------------~~~g-------------v~~~~s--LdelL~~s 231 (501)
||..||..+...|++|..||++... ... ...| ++...+ +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 6889999999999999999987631 000 0011 222222 55788999
Q ss_pred CEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 232 DvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
|+|+-++|.+.+.+..+-.+..+.++++++|.....+ +....|.+.++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~--~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTST--FLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcccc--CCHHHHHhhcC
Confidence 9999999999999998888888999999999555444 77777777764
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.018 Score=60.46 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=58.2
Q ss_pred CeEEeecc-chHHHHHHHHHHhC-CCEEE-EECCCCCch--hhhhc----Cc--eecC--CHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAF-GFNVI-FYDPYLPDG--IEKSL----GL--TRVY--TLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~af-G~~Vi-~~dr~~~~~--~~~~~----gv--~~~~--sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||. |.+|+.+++.|..+ +.++. .++++...+ ..... +. ..+. +.++++.++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999987 67877 446443211 11111 11 0122 4566667899999999943
Q ss_pred hhhhcccHHHHhc-CCCCcEEEEcCCCCccCHH
Q psy7383 243 HNHHLINEFTIKQ-MRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 243 ~T~~lI~~~~l~~-MK~gAilINvaRG~vVde~ 274 (501)
..+.+ ... .+.|..+|+.+-.-=.+..
T Consensus 80 ~s~~~-----~~~~~~~G~~VIDlS~~fR~~~~ 107 (346)
T TIGR01850 80 VSAEL-----APELLAAGVKVIDLSADFRLKDP 107 (346)
T ss_pred HHHHH-----HHHHHhCCCEEEeCChhhhcCCh
Confidence 22222 222 2568999999854334433
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.11 Score=54.36 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=64.1
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCCC---chh-------hhhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYLP---DGI-------EKSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~~---~~~-------~~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
|.|+||++||-+ ++.++++..+..||++|.+..|..- ... .+..| +....+++++++++|||..-+
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV 232 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999997 7889999999999999999887531 111 12234 334578999999999998743
Q ss_pred cC--c-----hh-----hhhcccHHHHh-cCCCCcEEEEcC
Q psy7383 239 TL--N-----EH-----NHHLINEFTIK-QMRPGAFLVNTA 266 (501)
Q Consensus 239 Pl--t-----~~-----T~~lI~~~~l~-~MK~gAilINva 266 (501)
=. . ++ ....|+++.++ .+|++++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 11 0 00 11235666666 367777666553
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.016 Score=61.94 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=66.0
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhh-cCceecCCHHHHHhcCCEEEEeccCchhhhh-------
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS-LGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH------- 246 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~-~gv~~~~sLdelL~~sDvVil~lPlt~~T~~------- 246 (501)
.++|.|||+|.+|.++|+.|+..|++|.++|++........ ..-......+.+..++|+|+.+.+..+....
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 36899999999999999999999999999997653211100 0001112334455789998887654432111
Q ss_pred ---cccHHH--Hhc--C-CCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 247 ---LINEFT--IKQ--M-RPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 247 ---lI~~~~--l~~--M-K~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
++.+.. +.. + +.-.+=|--+.|+.-..+-|...|+.
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 233222 222 2 22245566667887777777777765
|
|
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.16 Score=53.70 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=63.2
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC---chh---hhhcC---ceecCCHHHHHhcCCEEEEecc---
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP---DGI---EKSLG---LTRVYTLQDLLFQSDCVSLHCT--- 239 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~---~~~---~~~~g---v~~~~sLdelL~~sDvVil~lP--- 239 (501)
+.|+||++||= -++.+.++..+..||++|.+..|..- ... .+..+ +....++++.++++|||..-.=
T Consensus 192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~ 271 (348)
T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASM 271 (348)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCcccc
Confidence 78999999986 45778888888999999999887531 111 11222 4455789999999999987531
Q ss_pred Cc-hh--------hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 240 LN-EH--------NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 240 lt-~~--------T~~lI~~~~l~~MK~gAilINva 266 (501)
.. ++ ....++++.++.+|++++|.-+.
T Consensus 272 ~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 272 GQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred ccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 11 11 11345667777777776665553
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.033 Score=57.10 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=33.3
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~ 208 (501)
++.+|++.|||.|..+++++..|...|. +|.++||+.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3688999999999999999999988887 799999974
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.059 Score=57.68 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=70.5
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-----hhhhhcCceec--CCHHHHHhc-CCEEEEec--cCc-
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-----GIEKSLGLTRV--YTLQDLLFQ-SDCVSLHC--TLN- 241 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-----~~~~~~gv~~~--~sLdelL~~-sDvVil~l--Plt- 241 (501)
+.||++.|+|.|.+|.++|+.|+..|++|+++|+.... ......|++.. ....+++.+ .|+||..- +.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 67899999999999999999999999999999975421 11223455432 123445554 89888754 211
Q ss_pred hh-------hhhcccHH-HHhcC-CCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 242 EH-------NHHLINEF-TIKQM-RPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 242 ~~-------T~~lI~~~-~l~~M-K~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+. ...++.+. ++..+ +...+-|--+.|+--...-|...|+.
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 11 01123332 22233 33456666678888777777777775
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.016 Score=63.30 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=69.9
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC--CHHHHHhcCCEEEEeccCchhhh----
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY--TLQDLLFQSDCVSLHCTLNEHNH---- 245 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~--sLdelL~~sDvVil~lPlt~~T~---- 245 (501)
+.|++|.|+|+|.+|.+.++.|+..|++|+++|..... ...+..|+.... ...+.+.++|+|+.+--..+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 57899999999999999999999999999999965321 112334654331 23456788998887643222211
Q ss_pred ------hcccHHHHh--cC-------CCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 246 ------HLINEFTIK--QM-------RPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 246 ------~lI~~~~l~--~M-------K~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
.++.+-.|. .+ +...+-|--+-|+.-...-|...|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 123322221 11 11245566667887777777777775
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.021 Score=60.33 Aligned_cols=62 Identities=27% Similarity=0.433 Sum_probs=46.3
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh-hcC-ce-ec---CCHHHHHhcCCEEEE
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-SLG-LT-RV---YTLQDLLFQSDCVSL 236 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-~~g-v~-~~---~sLdelL~~sDvVil 236 (501)
.+||||||-|..|+-|+..++.+|++|++.|+..+..... +.. +. .. ..+.++++.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 3789999999999999999999999999999876432111 111 11 11 247788999999975
|
|
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.13 Score=54.00 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=65.1
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC---Cchh-------hhhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL---PDGI-------EKSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~---~~~~-------~~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
+.|+||++||-+ ++.++++..+..||++|.+..|.. .... .+..| +....++++.++++|+|..-.
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 232 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV 232 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence 789999999975 888999999999999999988753 1111 11234 445578999999999998742
Q ss_pred cC--ch------h-----hhhcccHHHHhcCC-CCcEEEEcC
Q psy7383 239 TL--NE------H-----NHHLINEFTIKQMR-PGAFLVNTA 266 (501)
Q Consensus 239 Pl--t~------~-----T~~lI~~~~l~~MK-~gAilINva 266 (501)
=. .. + ....|+++.++.+| ++++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 10 00 0 12235777777775 477776664
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.028 Score=61.06 Aligned_cols=124 Identities=20% Similarity=0.179 Sum_probs=79.5
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch----h-hhhcCceecC--CHHHHHhcCCEEEEeccCchhhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG----I-EKSLGLTRVY--TLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~----~-~~~~gv~~~~--sLdelL~~sDvVil~lPlt~~T~ 245 (501)
+.+++|.|+|+|.-|.++|+.|+..|++|+++|.+.... . ....+++... ..++.+.++|+|+.. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 449999999999999999999999999999999665331 1 1123333221 122668889999886 3221111
Q ss_pred h-----------ccc-HHHHhcC--CCCcEEEEcCCCCccCHHHHHHHHHc--------CCceEEEEecCCCCC
Q psy7383 246 H-----------LIN-EFTIKQM--RPGAFLVNTARGGLVDDDSLAAALKQ--------GRIRAAALDVHESEP 297 (501)
Q Consensus 246 ~-----------lI~-~~~l~~M--K~gAilINvaRG~vVde~aL~~aL~~--------g~I~GAaLDVfe~EP 297 (501)
- ++. -++|-+. +.-.+-|--.-|+--.+.-+...|++ |+|...++|+.+++.
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~ 157 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE 157 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence 1 222 2333332 22245555566877666666666665 778888999987743
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.02 Score=57.11 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=56.0
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhh-------hhcC-------------------cee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIE-------KSLG-------------------LTR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~-------~~~g-------------------v~~- 220 (501)
..|++++|.|+|+|.+|..+|+.|...|. +++.+|...-+ .+. ...| ++.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 46999999999999999999999999887 57777754211 000 0001 111
Q ss_pred ---c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhc
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~ 255 (501)
. .++++++.++|+|+.++ .+.+++.++++...+.
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~ 138 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFAA 138 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHHc
Confidence 1 12456788888887766 5677787777655443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >KOG2304|consensus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0046 Score=61.41 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=84.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch------hhh-------h-cC----------------ceecCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG------IEK-------S-LG----------------LTRVYT 223 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~------~~~-------~-~g----------------v~~~~s 223 (501)
.=+.|+|||.|.||..||+.+...|++|..+|.+.+.- ... . .. ++...+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 34679999999999999999999999999999875310 000 0 00 011124
Q ss_pred HHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCC
Q psy7383 224 LQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV-NTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQ 302 (501)
Q Consensus 224 LdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilI-NvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~ 302 (501)
+.++++++|+|+=++-.+-+.+.-|-++.=..+|+.++|+ |++. +...++..+++..... ++|-.|..-|.-
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~srf-~GlHFfNPvPvM--- 162 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSRF-AGLHFFNPVPVM--- 162 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhhh-ceeeccCCchhH---
Confidence 4566777887776665444444444455555678888775 5544 5566677777665543 588877655532
Q ss_pred CCCCCCCCeEEecCCC
Q psy7383 303 GNLKDAPNILCTPHAA 318 (501)
Q Consensus 303 ~pL~~~pNVilTPHiA 318 (501)
++=.||=|+..+
T Consensus 163 ----KLvEVir~~~TS 174 (298)
T KOG2304|consen 163 ----KLVEVIRTDDTS 174 (298)
T ss_pred ----HHhhhhcCCCCC
Confidence 222356666544
|
|
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.065 Score=55.55 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=49.7
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEe
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~ 237 (501)
+.|++|++||= +++.++++..+..||++|.+..|..-.... -.......++++.++++|+|...
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~~~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-MPEYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-ccceEEECCHHHHhCCCCEEEEC
Confidence 78999999988 589999999999999999999875321100 11134557899999999999774
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.029 Score=48.49 Aligned_cols=84 Identities=21% Similarity=0.350 Sum_probs=55.2
Q ss_pred EEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhhhcc
Q psy7383 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~~lI 248 (501)
|.|+|+|.+|+.+++.|+..+.+|++.|..... ...+..++..+ .+ |+++ +.++|.|+++.+... .++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~--~n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDE--ENLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHH--HHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHH--HHHH
Confidence 569999999999999999977799999987532 22233444322 12 2222 678999999887443 4444
Q ss_pred cHHHHhcCCCCcEEE
Q psy7383 249 NEFTIKQMRPGAFLV 263 (501)
Q Consensus 249 ~~~~l~~MK~gAilI 263 (501)
-...++.+-+...+|
T Consensus 79 ~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 79 IALLARELNPDIRII 93 (116)
T ss_dssp HHHHHHHHTTTSEEE
T ss_pred HHHHHHHHCCCCeEE
Confidence 455666666665555
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.014 Score=57.43 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=64.1
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh---hhcCce---ecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE---KSLGLT---RVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~---~~~gv~---~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
.+|.||+|.|||-|..|..=++.|...|++|+++.+...+++. ....+. ...+.++ +..+++|+.++...
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~--- 83 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE--- 83 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH---
Confidence 4699999999999999999999999999999999988733321 111111 1123333 44589988887633
Q ss_pred hhcccHHHHhcCCCCcEEEEc
Q psy7383 245 HHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINv 265 (501)
-+|++.++.+++-.++||+
T Consensus 84 --~ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 84 --ELNERIAKAARERRILVNV 102 (210)
T ss_pred --HHHHHHHHHHHHhCCceec
Confidence 3567777777777788988
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.083 Score=54.16 Aligned_cols=111 Identities=10% Similarity=0.105 Sum_probs=77.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh--------
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH-------- 246 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~-------- 246 (501)
|++++|||-=.==..+++.|...|++|..|.-...... -.++....+.++.++++|+|++=+|.+.+...
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG--FTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc--cccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 57899999888888999999999999888763211110 11455554566669999999999997655321
Q ss_pred --cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 247 --LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 247 --lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
.++++.++.|+++++ +-++ ++..+|-+++++..|. ..|.++
T Consensus 79 ~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~ 121 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE 121 (287)
T ss_pred CccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence 257899999998665 3343 4555666677888876 555444
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.21 Score=52.43 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=66.4
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC--Cch--------hhhhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL--PDG--------IEKSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~--~~~--------~~~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
+.|++|++||=+ ++.++++..+..+|++|.+..|.. ..+ ..+..| +....++++.++++|||..-+
T Consensus 154 l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~ 233 (334)
T PRK01713 154 LSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDV 233 (334)
T ss_pred cCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 789999999986 678888999999999999998753 111 112234 344578999999999998732
Q ss_pred ----cCch---hh------hhcccHHHHhcC-CCCcEEEEcCC
Q psy7383 239 ----TLNE---HN------HHLINEFTIKQM-RPGAFLVNTAR 267 (501)
Q Consensus 239 ----Plt~---~T------~~lI~~~~l~~M-K~gAilINvaR 267 (501)
.... +. ...|+++.++++ |++++|.-+.-
T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP 276 (334)
T PRK01713 234 WVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLP 276 (334)
T ss_pred eeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCC
Confidence 1000 11 123678888876 78888877653
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.027 Score=59.07 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=42.8
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEEEE-CCCCCch--hhhh------------------cCceecCCHHHHHhcCCE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVIFY-DPYLPDG--IEKS------------------LGLTRVYTLQDLLFQSDC 233 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi~~-dr~~~~~--~~~~------------------~gv~~~~sLdelL~~sDv 233 (501)
.+|||+|+|+||+.+++.+... +++|.+. |+..... ..+. .++....++++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 3799999999999999988754 6887765 4322100 0111 122223467788888999
Q ss_pred EEEeccC
Q psy7383 234 VSLHCTL 240 (501)
Q Consensus 234 Vil~lPl 240 (501)
|+.+.|.
T Consensus 82 VIdaT~~ 88 (341)
T PRK04207 82 VVDATPG 88 (341)
T ss_pred EEECCCc
Confidence 9998763
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.043 Score=56.32 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=69.0
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhcC----ceecCCHHHH--HhcCCEEEEeccCch
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSLG----LTRVYTLQDL--LFQSDCVSLHCTLNE 242 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~g----v~~~~sLdel--L~~sDvVil~lPlt~ 242 (501)
.+.|+++.|+|.|..+++++..|+..|+ +|.+++|+.++. +.+.++ ......++++ +.++|+||.++|..-
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm 202 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM 202 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence 3678999999999999999999999995 799999986542 222222 1011122222 226999999999643
Q ss_pred hhh---hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 243 HNH---HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 243 ~T~---~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
.-. .+++ ...++++.++.++--... ++.=|..|=++|
T Consensus 203 ~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G 242 (283)
T COG0169 203 AGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG 242 (283)
T ss_pred CCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence 322 1333 566778888888755443 333333333334
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.026 Score=57.74 Aligned_cols=90 Identities=19% Similarity=0.287 Sum_probs=54.9
Q ss_pred EEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchh------hhh---c----CceecCCHHHHHhcCCEEEEeccC--c
Q psy7383 178 LGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGI------EKS---L----GLTRVYTLQDLLFQSDCVSLHCTL--N 241 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~------~~~---~----gv~~~~sLdelL~~sDvVil~lPl--t 241 (501)
|+|||.|.||..+|..+...|. +|+.+|....... ... . .+....+. +.+++||+|+++... .
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCCC
Confidence 6899999999999999987665 9999998753211 000 0 11112344 458999999997731 1
Q ss_pred ---------hhhhhccc--HHHHhcCCCCcEEEEcCCC
Q psy7383 242 ---------EHNHHLIN--EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 ---------~~T~~lI~--~~~l~~MK~gAilINvaRG 268 (501)
+++..++. .+.+....+.+++|+++-.
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP 117 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNP 117 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 11112221 1233444567788888743
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.46 Score=54.92 Aligned_cols=209 Identities=18% Similarity=0.119 Sum_probs=131.0
Q ss_pred CCCcEEEEcCccccc-cchhh-hh-hcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhc
Q psy7383 91 KTLRIIVRIGSGVDN-IDVKA-AG-ELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAA 167 (501)
Q Consensus 91 p~LK~I~~~gaG~D~-ID~~a-a~-~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~ 167 (501)
|+...|++-=.+..+ +.++. .+ +..|+|.|. +.+ -+|--+++-+|+.+|-. |
T Consensus 126 p~~g~i~~ED~~~p~~f~i~~~~~~~~~ip~f~D-D~~--GTa~v~lA~l~na~~~~---------~------------- 180 (752)
T PRK07232 126 PTFGGINLEDIKAPECFYIEEKLRERMDIPVFHD-DQH--GTAIISAAALLNALELV---------G------------- 180 (752)
T ss_pred CCccEEeeeecCCchHHHHHHHHHHhcCCCeecc-ccc--hHHHHHHHHHHHHHHHh---------C-------------
Confidence 444455554444332 22222 22 346899998 443 45667788888877742 1
Q ss_pred cccccccCCeEEeeccchHHHHHHHHHHhCCC---EEEEECCCC----Cc--h--hhhh-c-CceecCCHHHHHhcCCEE
Q psy7383 168 SGCARIRGDTLGIVGLGRIGSAVALRAKAFGF---NVIFYDPYL----PD--G--IEKS-L-GLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 168 ~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~---~Vi~~dr~~----~~--~--~~~~-~-gv~~~~sLdelL~~sDvV 234 (501)
+.|...+|.|.|.|.-|-.+|+.|...|. +++.+|++- .. . ..+. + .-....+|+|+++.+|++
T Consensus 181 ---~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~ 257 (752)
T PRK07232 181 ---KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVF 257 (752)
T ss_pred ---CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEE
Confidence 24788999999999999999999999998 788998652 11 0 1111 0 012234899999999988
Q ss_pred EEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEe
Q psy7383 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCT 314 (501)
Q Consensus 235 il~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilT 314 (501)
+-. . +.++|+++.++.|.+..++.=.+....--..+.+.....+.|.+.+- ...| -+.-|+++-
T Consensus 258 iG~-s----~~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atGr---s~~p--------nQ~NN~~~F 321 (752)
T PRK07232 258 LGL-S----AAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAVRPDAIIATGR---SDYP--------NQVNNVLCF 321 (752)
T ss_pred EEc-C----CCCCCCHHHHHHhccCCEEEecCCCCccCCHHHHHHhcCCEEEEECC---cCCC--------Ccccceeec
Confidence 753 2 25899999999999999999999876521222222332334554331 1111 156789999
Q ss_pred cCCCC-----CcHHHHHHHHHHHHHHHHHHHhCC
Q psy7383 315 PHAAF-----YSEASCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 315 PHiAg-----~T~ea~~~~~~~~~~ni~~~l~G~ 343 (501)
|=++- ....-.++|...+++.|..+..-+
T Consensus 322 Pgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~ 355 (752)
T PRK07232 322 PYIFRGALDVGATTINEEMKLAAVRAIAELAREE 355 (752)
T ss_pred chhhHHHHHcCCccCCHHHHHHHHHHHHhhcccc
Confidence 97652 122233466666777776655443
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.032 Score=59.94 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=52.7
Q ss_pred cccCCeEEeecc----------chHHHHHHHHHHhCC-CEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 172 RIRGDTLGIVGL----------GRIGSAVALRAKAFG-FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 172 ~L~gktVGIVGl----------G~IG~~iA~~L~afG-~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
++.+++|+|+|+ ..-...+++.|+..| .+|.+|||..........+.....+++|.+++||+|+++...
T Consensus 317 ~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~ 396 (415)
T PRK11064 317 RASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLVDH 396 (415)
T ss_pred CcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECCCC
Confidence 478999999998 457789999999996 999999998543211111111236899999999999998764
Q ss_pred c
Q psy7383 241 N 241 (501)
Q Consensus 241 t 241 (501)
.
T Consensus 397 ~ 397 (415)
T PRK11064 397 S 397 (415)
T ss_pred H
Confidence 3
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.019 Score=57.43 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=59.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhh-------hcC-----------------c--ee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEK-------SLG-----------------L--TR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~-------~~g-----------------v--~~- 220 (501)
..|+.++|.|||+|.+|..+++.|...|. ++.++|...-+ .+.+ ..| + +.
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 46999999999999999999999999997 67777743210 0000 000 1 10
Q ss_pred ---c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
. ..++++++++|+|+.++ .+.+++.++++...+.. .-+|..
T Consensus 108 ~~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~~---ip~v~~ 153 (245)
T PRK05690 108 NARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAAK---KPLVSG 153 (245)
T ss_pred eccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHhC---CEEEEe
Confidence 1 12356788899888776 56677777776555543 335554
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.049 Score=58.82 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=70.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEec--cCc-h-----
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHC--TLN-E----- 242 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~l--Plt-~----- 242 (501)
++.+++|.|||+|.+|..+|+.|+..|++|.++|...... .....|++....-.+-+.++|+||..= |.+ +
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 4778999999999999999999999999999999654321 112345542211123357899887531 211 1
Q ss_pred --hhhh----cccH-HHHhc-C-----CCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 243 --HNHH----LINE-FTIKQ-M-----RPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 243 --~T~~----lI~~-~~l~~-M-----K~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+++. ++.+ +.+.. + +...+-|.-+.|+.-...-|...|+..
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 1111 1332 22222 2 334566777889988888888888763
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.055 Score=55.73 Aligned_cols=90 Identities=16% Similarity=0.247 Sum_probs=62.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-----CHHHHHh---cCCEEEEeccCch
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-----TLQDLLF---QSDCVSLHCTLNE 242 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-----sLdelL~---~sDvVil~lPlt~ 242 (501)
..|++|.|+|.|.+|...++.++..|. +|++.+++..+ +..+++|...+. +++++.. ..|+|+-++.. +
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~-~ 246 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH-P 246 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC-H
Confidence 358999999999999999999999999 58888876533 455566654321 2334332 26888776542 1
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+ .+ ...++.++++..+|.++.
T Consensus 247 ~---~~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 247 S---SI-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H---HH-HHHHHHhhcCCEEEEEcc
Confidence 1 11 456777888888888875
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.041 Score=58.75 Aligned_cols=88 Identities=17% Similarity=0.292 Sum_probs=62.3
Q ss_pred ccCCeEEeeccc----------hHHHHHHHHHHhCCCEEEEECCCCCchhhhh-cCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGLG----------RIGSAVALRAKAFGFNVIFYDPYLPDGIEKS-LGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGlG----------~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~-~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
|+||||||+|+- .-...++++|+..|++|.+|||...+....- .++....++++++++||+|+++.- .
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence 899999999984 3567899999999999999999764432222 135677899999999999998753 3
Q ss_pred hhhhhcccHHHHhcCCCCcEEEE
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVN 264 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilIN 264 (501)
++-+.+ +-+.+ .|| +.++|+
T Consensus 387 ~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 387 DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhcc-Chhhh-hcc-CCEEEe
Confidence 344443 33333 565 344444
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.024 Score=61.81 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=72.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcCceecC--CHHHHHhcCCEEEEec--cC-chhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVY--TLQDLLFQSDCVSLHC--TL-NEHN 244 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~--sLdelL~~sDvVil~l--Pl-t~~T 244 (501)
.+.+++|.|+|+|.+|+++|+.|...|++|.++|+..... .....|+.... ...+.+.++|+||..- |. .++.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 4788999999999999999999999999999999764322 12334665432 2234567899888752 22 2221
Q ss_pred h-------hcccHHHHhc-------C--CCCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 245 H-------HLINEFTIKQ-------M--RPGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 245 ~-------~lI~~~~l~~-------M--K~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
. .++.+-.+.. + +...+-|--+-|+.-...-|...|+...
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 1 1233333321 1 1234555556788777777778887633
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.023 Score=60.72 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=55.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcCceec-------CCHHHH-HhcCCEEEEeccCchhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRV-------YTLQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~-------~sLdel-L~~sDvVil~lPlt~~T~ 245 (501)
++|.|+|+|.+|+.+++.|...|++|+++|++.... .....++..+ ..++++ +.++|+|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~-- 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET-- 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH--
Confidence 478999999999999999999999999999865321 1111332211 134455 7789999999875433
Q ss_pred hcccHHHHhcC-CCCcEEEE
Q psy7383 246 HLINEFTIKQM-RPGAFLVN 264 (501)
Q Consensus 246 ~lI~~~~l~~M-K~gAilIN 264 (501)
+++-....+.+ +...+++-
T Consensus 79 n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 79 NMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred HHHHHHHHHHhcCCCeEEEE
Confidence 33323334444 34444443
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.067 Score=57.32 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=70.9
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh------hhhcCceec--CCHHHHHhcCCEEEEeccCchhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI------EKSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~------~~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T 244 (501)
+.+|+|.|+|.|.+|..+|+.|...|++|.++|+...... ....+++.. ...++...++|+|+.+.-..+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~ 82 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDS 82 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCC
Confidence 6789999999999999999999999999999998742211 112244321 23346678899999875433322
Q ss_pred hhc----------cc-HH-HHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 245 HHL----------IN-EF-TIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 245 ~~l----------I~-~~-~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
.-+ +. .+ .....+...+-|--+.|+--..+-|...|+.
T Consensus 83 ~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 83 PPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred HHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 211 11 11 2222333344455567887777777777765
|
|
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.26 Score=53.44 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=50.1
Q ss_pred ccCCeEEeeccc---hHHHHHHHHHHhC-CCEEEEECCCCC---chhh---hhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG---RIGSAVALRAKAF-GFNVIFYDPYLP---DGIE---KSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG---~IG~~iA~~L~af-G~~Vi~~dr~~~---~~~~---~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
+.|+||++||-+ ++..+++..+..+ |++|.+..|..- .... +..| +....++++.++++|||....
T Consensus 239 l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 239 VDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred cCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999984 8899999998876 999999887531 1211 1223 444578999999999998743
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.25 Score=52.38 Aligned_cols=66 Identities=14% Similarity=0.213 Sum_probs=48.4
Q ss_pred cccCCeEEeeccc--------hHHHHHHHHHHhCCCEEEEECCCC---Cchh-------hhhcC--ceecCCHHHHHhcC
Q psy7383 172 RIRGDTLGIVGLG--------RIGSAVALRAKAFGFNVIFYDPYL---PDGI-------EKSLG--LTRVYTLQDLLFQS 231 (501)
Q Consensus 172 ~L~gktVGIVGlG--------~IG~~iA~~L~afG~~Vi~~dr~~---~~~~-------~~~~g--v~~~~sLdelL~~s 231 (501)
.|+|+||+|+|.| ++.++++..+..||++|.+..|.. .+.. .+..| +....++++.++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999753 455788888999999999998763 1111 11234 33457899999999
Q ss_pred CEEEEe
Q psy7383 232 DCVSLH 237 (501)
Q Consensus 232 DvVil~ 237 (501)
|||..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999875
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >KOG2711|consensus | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.041 Score=57.60 Aligned_cols=95 Identities=20% Similarity=0.145 Sum_probs=66.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHH-------hCCCEEEEECCCC--Cc---hh-----------------hhhcCceecCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAK-------AFGFNVIFYDPYL--PD---GI-----------------EKSLGLTRVYT 223 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~-------afG~~Vi~~dr~~--~~---~~-----------------~~~~gv~~~~s 223 (501)
-.-++|+|||.|+.|+.+|+.+. .|..+|..|-... .. .+ ....++..+.+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 34478999999999999999985 2445566553221 11 00 11123445678
Q ss_pred HHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 224 LQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 224 LdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
+.+++.++|+++..+|.+ -+.. |-++...+.|+++..|....|=
T Consensus 99 l~ea~~dADilvf~vPhQ-f~~~-ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQ-FIPR-ICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred HHHHhccCCEEEEeCChh-hHHH-HHHHHhcccCCCCeEEEeecce
Confidence 999999999999999954 2233 3467888999999999998873
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.048 Score=54.73 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=57.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~ 255 (501)
.++-|+|-|.+++.+|+.++.+|++|+++|++.... .. +....++.++...| .+.+..
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~--~~----------~~~~~~~~~~~~~~----------~~~~~~ 158 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF--PE----------DLPDGVATLVTDEP----------EAEVAE 158 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc--cc----------cCCCCceEEecCCH----------HHHHhc
Confidence 579999999999999999999999999999764310 00 00123332221111 223333
Q ss_pred CCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 256 MRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 256 MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+.+.+.+|=+.|+.-.|.+.|..+|++.
T Consensus 159 ~~~~t~vvi~th~h~~D~~~L~~aL~~~ 186 (246)
T TIGR02964 159 APPGSYFLVLTHDHALDLELCHAALRRG 186 (246)
T ss_pred CCCCcEEEEEeCChHHHHHHHHHHHhCC
Confidence 4567777777788888988888888543
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.026 Score=58.31 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=59.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC----CchhhhhcCceecCC----HHH--HHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL----PDGIEKSLGLTRVYT----LQD--LLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~----~~~~~~~~gv~~~~s----Lde--lL~~sDvVil~lPlt~~ 243 (501)
.|++|.|+|.|.||+..++.++..|++|++++++. ..+..+++|+..+.. +.+ .....|+|+-++... .
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~ 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP-P 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH-H
Confidence 57899999999999999999999999999998742 123445566554321 111 123467777765421 1
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.+ .+.++.|+++..+|.++.
T Consensus 251 ---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred ---HH-HHHHHHccCCcEEEEEec
Confidence 22 456677888877777654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.19 Score=52.85 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=62.8
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCCC---chh-------hhhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYLP---DGI-------EKSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~~---~~~-------~~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
+.|++|++||-+ ++.++++..+..||++|.+..|..- ... .+..| +....++++.++++|+|..-+
T Consensus 154 l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd~ 233 (336)
T PRK03515 154 FNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTDV 233 (336)
T ss_pred cCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecC
Confidence 789999999976 6899999999999999999887531 111 12234 445578999999999998742
Q ss_pred cCch-------------hhhhcccHHHHhcC-CCCcEEEEcC
Q psy7383 239 TLNE-------------HNHHLINEFTIKQM-RPGAFLVNTA 266 (501)
Q Consensus 239 Plt~-------------~T~~lI~~~~l~~M-K~gAilINva 266 (501)
=... -....++++.++.. |++++|.-+.
T Consensus 234 W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL 275 (336)
T PRK03515 234 WVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL 275 (336)
T ss_pred cccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence 1100 01123456666663 5666665553
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.022 Score=61.43 Aligned_cols=159 Identities=13% Similarity=0.018 Sum_probs=90.1
Q ss_pred CeEEeeccchHHHHHHH---HH---HhCCCEEEEECCCCCchh---------hhh----cCceecCCHHHHHhcCCEEEE
Q psy7383 176 DTLGIVGLGRIGSAVAL---RA---KAFGFNVIFYDPYLPDGI---------EKS----LGLTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~---~L---~afG~~Vi~~dr~~~~~~---------~~~----~gv~~~~sLdelL~~sDvVil 236 (501)
.+|+|||.|.+|...+- .+ ...|.+|..||+...... ... ..+....++++.+++||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998555 32 334679999998753210 011 122334578899999999999
Q ss_pred eccCch--h-hh--------h-------------c--------ccHHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 237 HCTLNE--H-NH--------H-------------L--------INEFTIKQMR---PGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 237 ~lPlt~--~-T~--------~-------------l--------I~~~~l~~MK---~gAilINvaRG~vVde~aL~~aL~ 281 (501)
+++... . ++ + + +-.+..+.++ |.+++||.+-.--+-..++.+...
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 998310 0 00 0 1 1123333343 699999998876566666666655
Q ss_pred cCCceEEEEecCCCCCCCCC--CCCCCCC------CCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhC
Q psy7383 282 QGRIRAAALDVHESEPYNVF--QGNLKDA------PNILCTPHAAFYSEASCTELREMAASEIRRAIVG 342 (501)
Q Consensus 282 ~g~I~GAaLDVfe~EPl~~~--~~pL~~~------pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G 342 (501)
.++.| +. +.+.... -...+.. -.++=-=|.+|.+.-.. + .+.+...|.+++..
T Consensus 161 -~rviG--~c---~~~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~-~-G~d~~p~l~~~~~~ 221 (423)
T cd05297 161 -IKTVG--LC---HGVQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEY-N-GEDLYPLLDEWIEE 221 (423)
T ss_pred -CCEEE--EC---CcHHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheE-C-CcchHHHHHHHHhc
Confidence 45544 32 1122100 0011111 24667788888774322 2 33345556666654
|
linked to 3D####ucture |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.027 Score=61.62 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=70.0
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hh--hhhc--CceecC--CHHHHHhcCCEEEEe--ccCc--
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GI--EKSL--GLTRVY--TLQDLLFQSDCVSLH--CTLN-- 241 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~--~~~~--gv~~~~--sLdelL~~sDvVil~--lPlt-- 241 (501)
+.+++|.|+|+|..|.++|+.|+..|.+|.++|..... .. .+.. +++... ...+.+.++|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 56889999999999999999999999999999975432 11 1222 333211 124556789999986 4432
Q ss_pred ---hh-------hhhccc-HHHHh-cC--------CCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 242 ---EH-------NHHLIN-EFTIK-QM--------RPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 242 ---~~-------T~~lI~-~~~l~-~M--------K~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
++ ...++. .+.+. .+ ++..+-|--+-|+--...-|...|++...
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~ 148 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGK 148 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 21 112232 22221 12 12345555567887777777777765443
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.26 Score=50.55 Aligned_cols=165 Identities=12% Similarity=0.073 Sum_probs=104.4
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhC----CC-------EEEEECCCC----C-chh-------hhhcCceecCCHHHHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAF----GF-------NVIFYDPYL----P-DGI-------EKSLGLTRVYTLQDLL 228 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~af----G~-------~Vi~~dr~~----~-~~~-------~~~~gv~~~~sLdelL 228 (501)
.|.+.+|.|+|.|.-|-.+|+.+... |. +++.+|++- . .+. .+...-....+|.|++
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i 101 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVV 101 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHH
Confidence 47889999999999999999999876 77 788888762 1 011 1111101234899999
Q ss_pred h--cCCEEEEeccCchhhhhcccHHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHH--cCC-ceEEEEecCCCCCCCC
Q psy7383 229 F--QSDCVSLHCTLNEHNHHLINEFTIKQMR---PGAFLVNTARGGLVDDDSLAAALK--QGR-IRAAALDVHESEPYNV 300 (501)
Q Consensus 229 ~--~sDvVil~lPlt~~T~~lI~~~~l~~MK---~gAilINvaRG~vVde~aL~~aL~--~g~-I~GAaLDVfe~EPl~~ 300 (501)
+ +.|+++=+- ..-++|+++.++.|. +..++.=.|+....-|-.-.++.+ +|+ |.+.+.-.-..|.-..
T Consensus 102 ~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr 177 (279)
T cd05312 102 KAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGK 177 (279)
T ss_pred HhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCe
Confidence 9 889987642 134899999999999 899999999876533433333333 355 5543321111111000
Q ss_pred CCCCCCCCCCeEEecCCCCC-----cHHHHHHHHHHHHHHHHHHHh
Q psy7383 301 FQGNLKDAPNILCTPHAAFY-----SEASCTELREMAASEIRRAIV 341 (501)
Q Consensus 301 ~~~pL~~~pNVilTPHiAg~-----T~ea~~~~~~~~~~ni~~~l~ 341 (501)
...--+.-|+++-|=++-- ...-.++|...+++.|.++..
T Consensus 178 -~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~ 222 (279)
T cd05312 178 -TYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVT 222 (279)
T ss_pred -EecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCC
Confidence 1112256789999987632 222335677777777777654
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.029 Score=54.95 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=33.2
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~ 207 (501)
..|+.++|.|||+|.+|..+|+.|...|.. +..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 469999999999999999999999999985 8888865
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.02 Score=59.00 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=57.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCCchh--hhhc-Cc-------e-ecCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPDGI--EKSL-GL-------T-RVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~~~--~~~~-gv-------~-~~~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||.|.+|..+|..|...| .+|..+|+...... ...+ .. . ...+. +.+++||+|+++++...
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~~ 79 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGANQ 79 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCCC
Confidence 37999999999999999999888 58999998753211 1111 00 0 11233 55899999999988532
Q ss_pred ---hhh--------hccc--HHHHhcCCCCcEEEEcC
Q psy7383 243 ---HNH--------HLIN--EFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 243 ---~T~--------~lI~--~~~l~~MK~gAilINva 266 (501)
+++ .++. .+.+....+.+++++++
T Consensus 80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 111 1121 12333345678888875
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.023 Score=59.63 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=33.9
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46999999999999999999999999998 89998864
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.063 Score=56.53 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=71.5
Q ss_pred CeEEeeccchHHHHHHHHHHhC--CCEEE-EECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCc-hhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--GFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLN-EHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt-~~T~~lI~ 249 (501)
.+|||||+ .+|+..++.++.. ++++. ++|+.... ...+.+|+..+.+++|++.+.|++++++|.+ +...|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence 58999999 6899999988775 47755 47776533 3455677776779999999999999999842 222221
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceE
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRA 287 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~G 287 (501)
+-..+.|+.|.-++.=---.+-+.++|+++.++..+.-
T Consensus 81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l 118 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRY 118 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEE
Confidence 22333445553333221112346668888888877763
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.02 Score=56.56 Aligned_cols=66 Identities=26% Similarity=0.272 Sum_probs=47.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh--h-hcCceec-------CCHHHH-HhcCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE--K-SLGLTRV-------YTLQDL-LFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~--~-~~gv~~~-------~sLdel-L~~sDvVil~lPlt 241 (501)
+++.|+|+|.+|..+|+.|...|++|+..|+....... . ......+ ..|.++ +.++|+++.+...+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 57999999999999999999999999999987543211 1 1222211 124444 77889998887643
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.041 Score=46.97 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=46.5
Q ss_pred CeEEeeccchHHHHHHHHH-HhCCCE-EEEECCCCCchhhhhcCceecCCHHHHHhc--CCEEEEeccCchhhhhcc
Q psy7383 176 DTLGIVGLGRIGSAVALRA-KAFGFN-VIFYDPYLPDGIEKSLGLTRVYTLQDLLFQ--SDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L-~afG~~-Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~--sDvVil~lPlt~~T~~lI 248 (501)
.++.|+|+|++|++++..+ ...|++ +.++|..+...-..-.++....+++++.+. .|+-++++|.. ..+..+
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~-~a~~~~ 79 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAE-AAQEVA 79 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HH-HHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHH-HHHHHH
Confidence 4799999999999988554 445655 455665544322223355544488888776 99999999843 334443
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.027 Score=60.02 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=64.3
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhC-CCEEEEECCCCCchh--hhhc------CceecCCHHH-HHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAF-GFNVIFYDPYLPDGI--EKSL------GLTRVYTLQD-LLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~af-G~~Vi~~dr~~~~~~--~~~~------gv~~~~sLde-lL~~sDvVil~lPlt 241 (501)
..-++|+|+|. |.+|+.+.+.|... .++|..+.+....+. .... ....+.+++. .++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35568999997 99999999999887 788888765432211 1100 0111122222 258899999999843
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~ 278 (501)
...+....|+.|..+|+.+..--.+.+++++
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence 3334444556789999999766566554444
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.35 Score=56.04 Aligned_cols=184 Identities=18% Similarity=0.123 Sum_probs=119.3
Q ss_pred cCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHH
Q psy7383 114 LGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALR 193 (501)
Q Consensus 114 ~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~ 193 (501)
.+|+|.|. +.+ -+|-.+++-+|+.+|-. | +.|...+|.|.|.|.-|-.+|+.
T Consensus 160 ~~ip~f~D-D~~--GTa~v~la~l~~a~~~~---------~----------------~~~~~~~iv~~GaGaag~~~a~~ 211 (763)
T PRK12862 160 MKIPVFHD-DQH--GTAIIVAAALLNGLKLV---------G----------------KDIEDVKLVASGAGAAALACLDL 211 (763)
T ss_pred CCCceEec-Ccc--cHHHHHHHHHHHHHHHh---------C----------------CChhhcEEEEEChhHHHHHHHHH
Confidence 36899998 433 35666778888877642 1 24788999999999999999999
Q ss_pred HHhCCC---EEEEECCCC----Cc-h-hh--h-hc-CceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCc
Q psy7383 194 AKAFGF---NVIFYDPYL----PD-G-IE--K-SL-GLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260 (501)
Q Consensus 194 L~afG~---~Vi~~dr~~----~~-~-~~--~-~~-gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gA 260 (501)
|...|. +++.+|+.- .. + .. + .+ .-....+|+|+++.+|+++-+- +.++|+++.++.|.+..
T Consensus 212 l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~p 286 (763)
T PRK12862 212 LVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRP 286 (763)
T ss_pred HHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCC
Confidence 999998 789999542 00 0 00 1 00 0012248999999999987542 25899999999999999
Q ss_pred EEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCC-----cHHHHHHHHHHHHHH
Q psy7383 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFY-----SEASCTELREMAASE 335 (501)
Q Consensus 261 ilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~-----T~ea~~~~~~~~~~n 335 (501)
++.=.|....--..+.+.....+.|.+.+ .. +.| -+.-|+++-|=++-- ...-.++|.-.+++.
T Consensus 287 iifalsNP~~E~~p~~a~~~~~~~i~atG-----rs-----~~p-~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~a 355 (763)
T PRK12862 287 LIFALANPTPEILPEEARAVRPDAIIATG-----RS-----DYP-NQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRA 355 (763)
T ss_pred EEEeCCCCcccCCHHHHHHhcCCEEEEEC-----Cc-----CCC-CcccceeeccchhhhHHhcCCeeCCHHHHHHHHHH
Confidence 99999987642112222222223455433 11 111 256689999987621 122334566666666
Q ss_pred HHHHHh
Q psy7383 336 IRRAIV 341 (501)
Q Consensus 336 i~~~l~ 341 (501)
|..+..
T Consensus 356 la~~~~ 361 (763)
T PRK12862 356 IAELAR 361 (763)
T ss_pred HHhccc
Confidence 666554
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.058 Score=55.95 Aligned_cols=110 Identities=21% Similarity=0.252 Sum_probs=66.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhh----hhc------CceecCCHHHHHhcCCEEEEeccC-
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIE----KSL------GLTRVYTLQDLLFQSDCVSLHCTL- 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~----~~~------gv~~~~sLdelL~~sDvVil~lPl- 240 (501)
.+|+|||.|.+|..+|-.|...|. ++..+|.+... +.. ... .+....+.++ +++||+|+++.-.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 589999999999999999876654 79999976532 111 111 1221234554 8999999996542
Q ss_pred -ch-hhhh-cc--c-------HHHHhcCCCCcEEEEcCCCCccCHH--HHHHH--HHcCCceEE
Q psy7383 241 -NE-HNHH-LI--N-------EFTIKQMRPGAFLVNTARGGLVDDD--SLAAA--LKQGRIRAA 288 (501)
Q Consensus 241 -t~-~T~~-lI--~-------~~~l~~MK~gAilINvaRG~vVde~--aL~~a--L~~g~I~GA 288 (501)
.+ +|+- ++ | .+.+....+.+++|+++-. +|.- .+.+. +...++.|.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP--~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNP--VDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccCh--HHHHHHHHHHHhCCCHHHEEec
Confidence 11 2331 11 1 1344445789999999843 4432 23333 445566655
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.051 Score=57.29 Aligned_cols=61 Identities=30% Similarity=0.476 Sum_probs=43.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce---ecC---CHHHHHhcCCEEEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT---RVY---TLQDLLFQSDCVSL 236 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~---~~~---sLdelL~~sDvVil 236 (501)
++|||||-|.+|+.++..++.+|++|+++|+............. ... .+.++++.||+|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 78999999999999999999999999999987543111110100 112 35667889998764
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.082 Score=53.51 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=44.8
Q ss_pred CeEEeec-cchHHHHHHHHHHh-CCCEEEE-ECCCCCc----hhhh-----hcCceecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKA-FGFNVIF-YDPYLPD----GIEK-----SLGLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~a-fG~~Vi~-~dr~~~~----~~~~-----~~gv~~~~sLdelL~~sDvVil~lP 239 (501)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+.... .... ..++..+.+++++...+|+|+.+.+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 3799999 79999999999975 5788655 6743221 1111 1345555688888667999999875
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.047 Score=56.57 Aligned_cols=87 Identities=20% Similarity=0.294 Sum_probs=57.9
Q ss_pred eEEeeccchHHHHHHHHHHhCCC-EEEEECCCC-------------Cch--h-------h----hhc--Cce--e-----
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL-------------PDG--I-------E----KSL--GLT--R----- 220 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~-------------~~~--~-------~----~~~--gv~--~----- 220 (501)
+|.|||+|.+|..+|+.|...|. +++.+|... ..+ . . ++. .++ .
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999999998 577776321 001 0 0 000 111 0
Q ss_pred ------------------cCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 221 ------------------VYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 221 ------------------~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
...++++++++|+|+.++ .+-++|.+++..-...-| .+|+.+-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~~k---~~I~aal 141 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAKNK---LVINAAL 141 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHhCC---cEEEEEe
Confidence 012568899999999987 788899888765544433 6777654
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.13 Score=53.27 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=62.3
Q ss_pred ccCCeEEeeccc---hHHHHHHHHHHhC-CCEEEEECCCC---Cchh---hhhcC--ceecCCHHHHHhcCCEEEEeccC
Q psy7383 173 IRGDTLGIVGLG---RIGSAVALRAKAF-GFNVIFYDPYL---PDGI---EKSLG--LTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 173 L~gktVGIVGlG---~IG~~iA~~L~af-G~~Vi~~dr~~---~~~~---~~~~g--v~~~~sLdelL~~sDvVil~lPl 240 (501)
+.|+||++||-+ ++.++++..+..| |++|.+..|.. .... .+..| +....++++.++++|||.... .
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~-~ 227 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR-I 227 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC-c
Confidence 789999999965 6889999998887 99999888753 1111 11223 334568999999999998843 2
Q ss_pred chh-------------hhhcccHHHHhcCCCCcEEEEc
Q psy7383 241 NEH-------------NHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 241 t~~-------------T~~lI~~~~l~~MK~gAilINv 265 (501)
..+ -...|+++.++.+|++++|.-+
T Consensus 228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 111 0134566666666666666544
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.11 Score=53.89 Aligned_cols=139 Identities=17% Similarity=0.142 Sum_probs=85.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce------------ecCCHHHHHhcCCEEEEeccCchh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT------------RVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~------------~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
++|.|+|.|.||..++.+|...|..|+.+.|....+..++.|+. ....-.+.+..+|+|++++-.. +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 47999999999999999999999888888766532222222221 1112235677899999998643 4
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC---CCCCCCCCCCCCCCCCCeEEecCCCCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH---ESEPYNVFQGNLKDAPNILCTPHAAFY 320 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf---e~EPl~~~~~pL~~~pNVilTPHiAg~ 320 (501)
+..++ +.....+++.++++-+--| +=.++.+-+.+.+.+|.+ ++..+ ..+|--. -......+.+.+..+..
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il~-G~~~~~a~~~~~g~v---~~~g~g~~~ig~~~~~~ 153 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVLG-GVTTHGAVREGPGHV---VHTGLGDTVIGELRGGR 153 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEEE-EEeeeeeEecCCceE---EEecCCcEEEccCCCCc
Confidence 44444 5677778889888876665 334445666666665543 33322 2222211 12234567777776655
Q ss_pred c
Q psy7383 321 S 321 (501)
Q Consensus 321 T 321 (501)
+
T Consensus 154 ~ 154 (307)
T COG1893 154 D 154 (307)
T ss_pred h
Confidence 4
|
|
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.31 Score=50.69 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=49.8
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEE
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil 236 (501)
+.|++|++||= +++..+++..+..+|+ +|.+..|..-. .......+....++++.++++|||..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 78999999998 5999999999999999 99998875311 11111235555789999999999976
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.027 Score=62.59 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=58.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~~ 246 (501)
.++-|+|+|++|+.+|+.|+..|.+|++.|.+.+. +..++.+...+ .+ ++++ ++++|.|+++++.+.++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 56899999999999999999999999999987543 22233443322 12 2222 5689999998887666655
Q ss_pred cccHHHHhcCCCCcEEEE
Q psy7383 247 LINEFTIKQMRPGAFLVN 264 (501)
Q Consensus 247 lI~~~~l~~MK~gAilIN 264 (501)
++-. ...+.+...+|-
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 5432 233345555553
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.032 Score=59.09 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=33.4
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|.+++|.|||+|.+|..+++.|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45899999999999999999999999998 68888865
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.036 Score=62.38 Aligned_cols=91 Identities=16% Similarity=0.274 Sum_probs=62.6
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~ 245 (501)
..+|.|+|+|++|+.+++.|...|.++++.|.+.+. +..++.|...+ .+ |+++ +.++|.|+++++..+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 457999999999999999999999999999977543 22334453321 12 2222 668999999988665554
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.++ ...+++.|...+|-.+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 443 44556667766665544
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.044 Score=59.31 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=72.5
Q ss_pred ccCCeEEeeccchHHHH-HHHHHHhCCCEEEEECCCCCch--hhhhcCceecC-CHHHHHhcCCEEEEeccC---chhhh
Q psy7383 173 IRGDTLGIVGLGRIGSA-VALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVY-TLQDLLFQSDCVSLHCTL---NEHNH 245 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~-iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~-sLdelL~~sDvVil~lPl---t~~T~ 245 (501)
..+++|.|||+|..|.+ +|+.|+..|++|.++|...... ..++.|+.... .-.+.+.++|+|++.--. .+..+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 56789999999999999 7999999999999999765321 12234554321 223456789988875322 22211
Q ss_pred -------hcccHH-HHh-cCC-CCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 246 -------HLINEF-TIK-QMR-PGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 246 -------~lI~~~-~l~-~MK-~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
.++.+- ++. .++ ...+-|--+.|+--...-|...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 234433 333 333 245666667898877777778887654
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.06 Score=64.05 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=46.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhC-CCE-------------EEEECCCCCchh--hhhc-Cc---ee-cCCHHHH---Hh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAF-GFN-------------VIFYDPYLPDGI--EKSL-GL---TR-VYTLQDL---LF 229 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~af-G~~-------------Vi~~dr~~~~~~--~~~~-gv---~~-~~sLdel---L~ 229 (501)
+.|+|+|||.|.||+.+|+.|... +.+ |.+.|++..... .+.. ++ .. +.+.+++ ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 477999999999999999999754 333 888998764322 1212 31 21 3455555 46
Q ss_pred cCCEEEEeccC
Q psy7383 230 QSDCVSLHCTL 240 (501)
Q Consensus 230 ~sDvVil~lPl 240 (501)
++|+|++++|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999995
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.053 Score=53.72 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=32.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46999999999999999999999999997 57777744
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.15 Score=52.70 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=65.1
Q ss_pred ccCCeEEeeccc---hHHHHHHHHHHhCCCEEEEECCCCC---chh---hhhcCc--eecCCHHHHHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGLG---RIGSAVALRAKAFGFNVIFYDPYLP---DGI---EKSLGL--TRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGlG---~IG~~iA~~L~afG~~Vi~~dr~~~---~~~---~~~~gv--~~~~sLdelL~~sDvVil~lPlt 241 (501)
+.|++|++||-+ ++.++++..+..||++|.+..|..- .+. .+..|. ....++++.++++|||...- ..
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~~ 226 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-IQ 226 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-cc
Confidence 789999999995 9999999999999999999987632 111 112343 34578999999999997732 11
Q ss_pred h------hh------hhcccHHHHhcCCCCcEEEEcC
Q psy7383 242 E------HN------HHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 242 ~------~T------~~lI~~~~l~~MK~gAilINva 266 (501)
. +. ..-|+++.++.+|++++|.-+.
T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 0 00 1235667777777777776543
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.12 Score=54.34 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=49.8
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC---Cchhh-------hhcC--ceecCCHHHHHhcCCEEEE
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL---PDGIE-------KSLG--LTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~-------~~~g--v~~~~sLdelL~~sDvVil 236 (501)
.+.|++|++||= .++.++++..+..+|++|.++.|.. ..... +..| +....++++.++++|||..
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~ 228 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT 228 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence 378999999997 6788888888999999999998763 21211 1123 4455789999999999987
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.051 Score=56.95 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=56.4
Q ss_pred CeEEeecc-chHHHHHHHHHHhC-CCEEEE-ECCCCCc-hhhhhcC-ce-----ecCCHHH-HHhcCCEEEEeccCchhh
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAF-GFNVIF-YDPYLPD-GIEKSLG-LT-----RVYTLQD-LLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~af-G~~Vi~-~dr~~~~-~~~~~~g-v~-----~~~sLde-lL~~sDvVil~lPlt~~T 244 (501)
++|+|||. |.+|+.+++.|... ++++.+ +++.... ......+ +. .+.++++ .+.++|+|++|+|.. ..
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~-~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG-VS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH-HH
Confidence 58999996 99999999999877 677655 5533211 1111111 11 1223333 457899999999853 22
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCH
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG~vVde 273 (501)
..++ .+.++.|..+||.+-.-=.+.
T Consensus 82 ~~~v----~~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 82 MDLA----PQLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred HHHH----HHHHhCCCEEEECCcccCCCC
Confidence 2222 122357899999985443444
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.046 Score=56.22 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=57.1
Q ss_pred EEeeccchHHHHHHHHHHhCC--CEEEEECCCCCchhhhhc---------C---ceecCCHHHHHhcCCEEEEeccCch-
Q psy7383 178 LGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPDGIEKSL---------G---LTRVYTLQDLLFQSDCVSLHCTLNE- 242 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~~~~~~~---------g---v~~~~sLdelL~~sDvVil~lPlt~- 242 (501)
|+|||.|.+|..+|-.|...| .++..+|........... . +....+ .+.+++||+|+++.....
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998888 589999987542111110 0 111123 468999999999886311
Q ss_pred --hhh--------hccc--HHHHhcCCCCcEEEEcCC
Q psy7383 243 --HNH--------HLIN--EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 243 --~T~--------~lI~--~~~l~~MK~gAilINvaR 267 (501)
+++ .++. ...+....+++++|+++-
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 111 1111 223344458999999984
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.044 Score=50.73 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=47.8
Q ss_pred EEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceec-------CCHHHHHhcCCEEEEeccCchh
Q psy7383 178 LGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV-------YTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 178 VGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~-------~sLdelL~~sDvVil~lPlt~~ 243 (501)
|.|+| .|.+|+.+++.|...|++|+++.|+...... ..+++.+ .++.+.++.+|+|+.+++.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 57888 5999999999999999999999988653221 2333221 2345678899999999875433
|
... |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.077 Score=54.35 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=48.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhc----Cc--eecCC---HHHHHhcCCEEEEeccC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSL----GL--TRVYT---LQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~----gv--~~~~s---LdelL~~sDvVil~lPl 240 (501)
+.+|++.|+|.|..+++++-.|...|+ +|.++||...+. +...+ +. ....+ +++.+..+|+||.+.|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 568999999999999999999999997 689999975432 21111 11 01112 23456778999988884
Q ss_pred c
Q psy7383 241 N 241 (501)
Q Consensus 241 t 241 (501)
.
T Consensus 205 G 205 (283)
T PRK14027 205 G 205 (283)
T ss_pred C
Confidence 3
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.38 Score=48.71 Aligned_cols=165 Identities=13% Similarity=0.011 Sum_probs=102.6
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-----------EEEEECCCC----Cc-hh---hhh-----cCceecCCHHHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-----------NVIFYDPYL----PD-GI---EKS-----LGLTRVYTLQDL 227 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-----------~Vi~~dr~~----~~-~~---~~~-----~gv~~~~sLdel 227 (501)
.|.+.||.|+|.|..|-.+|+.|...+. +++.+|+.- .. .. .+. .......+|.|+
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ea 101 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDA 101 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHH
Confidence 4788999999999999999999987765 688888652 10 10 011 111223589999
Q ss_pred Hh--cCCEEEEeccCchhhhhcccHHHHhcCC---CCcEEEEcCCCCccCH---HHHHHHHHcCCceEEEEecCCCCCCC
Q psy7383 228 LF--QSDCVSLHCTLNEHNHHLINEFTIKQMR---PGAFLVNTARGGLVDD---DSLAAALKQGRIRAAALDVHESEPYN 299 (501)
Q Consensus 228 L~--~sDvVil~lPlt~~T~~lI~~~~l~~MK---~gAilINvaRG~vVde---~aL~~aL~~g~I~GAaLDVfe~EPl~ 299 (501)
++ +.|+++=.. ...++|.++.++.|. +..++.=.|+...--| ++.+++=+.+.|.+.+.-.+..+-..
T Consensus 102 v~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g 177 (254)
T cd00762 102 VEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNG 177 (254)
T ss_pred HHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCC
Confidence 99 999987642 235899999999999 9999999998766333 33333322234543332222221100
Q ss_pred CCCCCCCCCCCeEEecCCCCCcH-----HHHHHHHHHHHHHHHHHHh
Q psy7383 300 VFQGNLKDAPNILCTPHAAFYSE-----ASCTELREMAASEIRRAIV 341 (501)
Q Consensus 300 ~~~~pL~~~pNVilTPHiAg~T~-----ea~~~~~~~~~~ni~~~l~ 341 (501)
. ...--+.-|+++-|=++--.- .-.++|...+++.|.++..
T Consensus 178 ~-~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~ 223 (254)
T cd00762 178 G-TYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVT 223 (254)
T ss_pred c-eeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCC
Confidence 0 011225679999998763221 2234666666777766553
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.07 Score=53.42 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=53.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCceecCCH---HH-H---H--hcCCEEEEeccCch
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGLTRVYTL---QD-L---L--FQSDCVSLHCTLNE 242 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv~~~~sL---de-l---L--~~sDvVil~lPlt~ 242 (501)
.|++|.|+|.|.||..+++.++.+|.+ |++.++...+ +..+++|+..+.+. .+ + . ...|+|+-++...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~- 198 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT- 198 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh-
Confidence 688999999999999999999999997 8888765432 34445555332111 11 1 1 1356665543211
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINva 266 (501)
. .+ ...++.++++..+|.++
T Consensus 199 ~---~~-~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 199 A---AV-RACLESLDVGGTAVLAG 218 (280)
T ss_pred H---HH-HHHHHHhcCCCEEEEec
Confidence 1 11 23455666666666664
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.12 Score=52.72 Aligned_cols=99 Identities=21% Similarity=0.193 Sum_probs=67.8
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC-------chhhhhcCceecCCHHHHHhcCCEEEEeccCch
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP-------DGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~-------~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
.+|+..||+|+|+ |.||..+||.|.+.+.+....-|... .......+-..+.+++..+.+.|+++-....
T Consensus 163 idlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~-- 240 (351)
T COG5322 163 IDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM-- 240 (351)
T ss_pred cCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec--
Confidence 5799999999996 99999999999998887665543211 1112233444445777666666666554432
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
.+-.+|+.+ .+||++++||-++..=||+.
T Consensus 241 ~~g~~I~pq---~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 241 PKGVEIFPQ---HLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred CCCceechh---hccCCeEEEcCCcCcccccc
Confidence 234566654 47999999999998766664
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.075 Score=55.68 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=65.8
Q ss_pred CeEEeeccchHHHHHHHHHHhC----------CCEEE-EECCCC--------Cchh----hhhcCc-e------ecCCHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF----------GFNVI-FYDPYL--------PDGI----EKSLGL-T------RVYTLQ 225 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af----------G~~Vi-~~dr~~--------~~~~----~~~~gv-~------~~~sLd 225 (501)
.+|+|+|+|.||+.+++.+... +++|. ++|++. ..+. ....+. . ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3799999999999999998754 56754 456431 1110 011111 1 123788
Q ss_pred HHHh--cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHcCCce
Q psy7383 226 DLLF--QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGL-VDDDSLAAALKQGRIR 286 (501)
Q Consensus 226 elL~--~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~v-Vde~aL~~aL~~g~I~ 286 (501)
+++. +.|+|+.++|....+...--.-..+.|+.|.-+|-...+.+ ...+.|.++.++..+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 8884 67999999885433222111223455566766665443333 2567788888877664
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.055 Score=50.18 Aligned_cols=85 Identities=19% Similarity=0.174 Sum_probs=56.3
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc---
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--- 249 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--- 249 (501)
..+++|++||+= +.++++|+..+.+|.++|+++........++ .....++++++||+|++.-. -++|
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~l~~aD~viiTGs------TlvN~Ti 78 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDV-PDEDAEEILPWADVVIITGS------TLVNGTI 78 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-E-EGGGHHHHGGG-SEEEEECH------HCCTTTH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcC-CHHHHHHHHccCCEEEEEee------eeecCCH
Confidence 578999999961 2378888888999999998764322222222 23457889999999998642 2333
Q ss_pred HHHHhcCCCCcEEEEcCC
Q psy7383 250 EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaR 267 (501)
.+.|+..+++..+|=++-
T Consensus 79 ~~iL~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 79 DDILELARNAREVILYGP 96 (147)
T ss_dssp HHHHHHTTTSSEEEEESC
T ss_pred HHHHHhCccCCeEEEEec
Confidence 467777887777766654
|
; PDB: 3L5O_B 3NPG_A. |
| >PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.042 Score=50.39 Aligned_cols=79 Identities=27% Similarity=0.374 Sum_probs=47.0
Q ss_pred EEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCC
Q psy7383 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMR 257 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK 257 (501)
+-|+|.|.+++++++.++.+|++|+++|++... +..++-+. +.+. ..+. +.+ .+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-----------------~~~~~~~~-~~~~----~~~~--~~~-~~~ 55 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-----------------FPEADEVI-CIPP----DDIL--EDL-EID 55 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC------------------TTSSEEE-CSHH----HHHH--HHC--S-
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-----------------cCCCCccE-ecCh----HHHH--hcc-CCC
Confidence 468999999999999999999999999976321 11333322 2211 1110 111 355
Q ss_pred CCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 258 PGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 258 ~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+++.+| +.++.-.|.+.|.++|++
T Consensus 56 ~~t~Vv-~th~h~~D~~~L~~~l~~ 79 (136)
T PF13478_consen 56 PNTAVV-MTHDHELDAEALEAALAS 79 (136)
T ss_dssp TT-EEE---S-CCCHHHHHHHHTTS
T ss_pred CCeEEE-EcCCchhHHHHHHHHHcC
Confidence 666666 778888888888888777
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.053 Score=59.05 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=69.3
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh----hhhcCceec--CCHHHHHhcCCEEEEeccCc---hh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI----EKSLGLTRV--YTLQDLLFQSDCVSLHCTLN---EH 243 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~----~~~~gv~~~--~sLdelL~~sDvVil~lPlt---~~ 243 (501)
+.||+|+|+|+|.-|.++|+.|+..|++|+++|....... ....++... ...++.+.++|+||..--.. +.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 5689999999999999999999999999999996432111 111122211 11245677899988753222 21
Q ss_pred h-------hhcccHHHH--hc-CC-----CCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 244 N-------HHLINEFTI--KQ-MR-----PGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 244 T-------~~lI~~~~l--~~-MK-----~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
. ..++.+-.| .. ++ ...+-|--+.|+--...-|...|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 114544333 33 32 2356666677887777777777775
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.084 Score=58.60 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=34.3
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
++.+|++.|+|.|.+|++++..|...|++|++++|+.
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4789999999999999999999999999999999864
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.068 Score=60.42 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CCHHHH----HhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YTLQDL----LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~sLdel----L~~sDvVil~lPlt~~T~ 245 (501)
..+|-|+|+|++|+.+++.|.+.|.++++.|.+.+. +..++.|...+ .+.+-+ +.++|.|++++...+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 468999999999999999999999999999977543 22334454322 122222 558999999987655554
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINva 266 (501)
.+ ....+.+.|+..+|--+
T Consensus 480 ~i--~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 480 QL--VELVKEHFPHLQIIARA 498 (621)
T ss_pred HH--HHHHHHhCCCCeEEEEE
Confidence 44 34555556665555433
|
|
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.64 Score=48.89 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=65.6
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC--C-chh-------hhhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL--P-DGI-------EKSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~--~-~~~-------~~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
+.|++|++||-+ ++.++++..+..+|++|.+..|.. . ... .+..| +....++++.++++|+|..-.
T Consensus 154 l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 233 (334)
T PRK12562 154 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDV 233 (334)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999975 789999999999999999988753 1 111 12224 444578999999999998753
Q ss_pred c----Cch----h-----hhhcccHHHHhcC-CCCcEEEEcCC
Q psy7383 239 T----LNE----H-----NHHLINEFTIKQM-RPGAFLVNTAR 267 (501)
Q Consensus 239 P----lt~----~-----T~~lI~~~~l~~M-K~gAilINvaR 267 (501)
= ... + -..-++++.++.. |++++|.-+.-
T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP 276 (334)
T PRK12562 234 WVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLP 276 (334)
T ss_pred ccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCC
Confidence 1 000 0 1123577777774 67777776643
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.086 Score=54.61 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=56.8
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CCCEEE-EECCCCCc---hhhhhcCcee-cCCHHHHHh-----cCCEEEEeccCchh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FGFNVI-FYDPYLPD---GIEKSLGLTR-VYTLQDLLF-----QSDCVSLHCTLNEH 243 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG~~Vi-~~dr~~~~---~~~~~~gv~~-~~sLdelL~-----~sDvVil~lPlt~~ 243 (501)
..+|||||+|.||+..+..+.. -++++. ++|+.... ...+++|+.. ..+.++++. +.|+|+.+.|..
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~-- 81 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG-- 81 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence 3579999999999997766654 467765 46665432 2345577764 357899985 578899988732
Q ss_pred hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINva 266 (501)
.|. +-.....+.|..+|+-+
T Consensus 82 -~H~--e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 82 -AHV--RHAAKLREAGIRAIDLT 101 (302)
T ss_pred -HHH--HHHHHHHHcCCeEEECC
Confidence 221 12223346677777765
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.12 Score=49.69 Aligned_cols=91 Identities=29% Similarity=0.289 Sum_probs=58.6
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC-----CHHH-H----HhcCCEEEEeccCch
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY-----TLQD-L----LFQSDCVSLHCTLNE 242 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~-----sLde-l----L~~sDvVil~lPlt~ 242 (501)
.|++|.|+|.|.+|+.+++.++..|.+|++.++.... ...+..+...+. +..+ + -...|+|+.++...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~- 212 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP- 212 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH-
Confidence 5789999999999999999999999999999876422 222223322110 1111 1 13568877765521
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
..-...++.|+++..+|+++...
T Consensus 213 ----~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 213 ----ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred ----HHHHHHHHhcccCCEEEEEccCC
Confidence 12244567778888888777653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.35 Score=52.06 Aligned_cols=184 Identities=21% Similarity=0.136 Sum_probs=118.9
Q ss_pred hcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHH
Q psy7383 113 ELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVAL 192 (501)
Q Consensus 113 ~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~ 192 (501)
+..|+|.|.. - .-+|--+++-+|+.+|-. | +.|+..+|.|.|.|.-|-.+++
T Consensus 165 ~~~IPvFhDD-q--qGTaiv~lA~llnalk~~---------g----------------k~l~d~kiv~~GAGAAgiaia~ 216 (432)
T COG0281 165 RMNIPVFHDD-Q--QGTAIVTLAALLNALKLT---------G----------------KKLKDQKIVINGAGAAGIAIAD 216 (432)
T ss_pred cCCCCccccc-c--cHHHHHHHHHHHHHHHHh---------C----------------CCccceEEEEeCCcHHHHHHHH
Confidence 4567777763 2 235666777888877643 1 3488999999999999999999
Q ss_pred HHHhCCC---EEEEECCCCC--chh----hhhcCce-------ecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcC
Q psy7383 193 RAKAFGF---NVIFYDPYLP--DGI----EKSLGLT-------RVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQM 256 (501)
Q Consensus 193 ~L~afG~---~Vi~~dr~~~--~~~----~~~~gv~-------~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~M 256 (501)
.+.+.|+ +|+++|++-- ++. ....... .... ++.+..+|+++-+- ..++|.++.++.|
T Consensus 217 ~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~M 290 (432)
T COG0281 217 LLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEM 290 (432)
T ss_pred HHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHh
Confidence 9999998 5999997621 110 0000000 0111 45788999987642 2399999999999
Q ss_pred CCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCC-----cHHHHHHHHH
Q psy7383 257 RPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFY-----SEASCTELRE 330 (501)
Q Consensus 257 K~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~-----T~ea~~~~~~ 330 (501)
.+..++.=++....--....+.....+ .|.+ ..-|..+ - +.-|+++-|-+.-- ...-.++|..
T Consensus 291 a~~PiIfalaNP~pEi~Pe~a~~~~~~aaiva------TGrsd~P----n-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~ 359 (432)
T COG0281 291 AKHPIIFALANPTPEITPEDAKEWGDGAAIVA------TGRSDYP----N-QVNNVLIFPGIFRGALDVRAKTITDEMKI 359 (432)
T ss_pred ccCCEEeecCCCCccCCHHHHhhcCCCCEEEE------eCCCCCc----c-cccceeEcchhhhhhHhhccccCCHHHHH
Confidence 999999999887642222222222222 3432 3333322 2 77899999998732 2223356777
Q ss_pred HHHHHHHHHHh
Q psy7383 331 MAASEIRRAIV 341 (501)
Q Consensus 331 ~~~~ni~~~l~ 341 (501)
.+++.|.++..
T Consensus 360 AAa~AiA~~~~ 370 (432)
T COG0281 360 AAAEAIADLAR 370 (432)
T ss_pred HHHHHHHhhcc
Confidence 77777777654
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.15 Score=54.57 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=69.7
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh------hh-hcCceec--CCHHHHHhcCCEEEEeccC---chhh
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI------EK-SLGLTRV--YTLQDLLFQSDCVSLHCTL---NEHN 244 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~------~~-~~gv~~~--~sLdelL~~sDvVil~lPl---t~~T 244 (501)
++.|||+|.+|.++|+.|+..|++|.++|....... .+ ..|++.. .+ .+.+.++|+|+..--. +++-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 478999999999999999999999999997643211 11 2355432 13 4557889988775322 2221
Q ss_pred h-------hcccH-HHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 245 H-------HLINE-FTI-KQMRPGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 245 ~-------~lI~~-~~l-~~MK~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
. .++.+ +++ ..++...+-|.-+.|+--...-|...|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 12333 232 3344456667777899888887778887644
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.06 Score=57.20 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=57.2
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhh-------h---------------hcC----cee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIE-------K---------------SLG----LTR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~-------~---------------~~g----v~~- 220 (501)
..|++++|.|||+|.+|..+++.|...|. ++..+|...-+ .+. . +.+ ++.
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 46999999999999999999999999997 78888754200 000 0 000 111
Q ss_pred ---c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhc
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~ 255 (501)
+ .+++++++++|+|+.|+ .+-+++.+||+...+.
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~-Dn~~~r~~in~~~~~~ 155 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGS-DSFATKFLVADAAEIT 155 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 1 13456888899886654 5677888887655444
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.067 Score=57.55 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=68.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh---hhh--cCceecC--CHHHHHhcCCEEEEec--cC-chh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI---EKS--LGLTRVY--TLQDLLFQSDCVSLHC--TL-NEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~---~~~--~gv~~~~--sLdelL~~sDvVil~l--Pl-t~~ 243 (501)
.+-+|.|||+|.+|.++|+.|+..|++|.++|....... .+. .|+.... .-.+.+.++|+||..= |. .++
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~ 84 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPA 84 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHH
Confidence 345799999999999999999999999999997643211 112 2554321 1234567899887653 21 221
Q ss_pred hh-------hcccH-HHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 244 NH-------HLINE-FTI-KQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 244 T~-------~lI~~-~~l-~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
-+ .++.+ +++ ..++...+-|--+.|+--...-+...|+.
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 11 13332 333 33444456666677887777777777775
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.069 Score=56.32 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=32.6
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|++++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46999999999999999999999999987 57777754
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.11 Score=53.80 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=57.7
Q ss_pred CeEEeecc-chHHHHHHHHHH---hCCCEEEEECCCCCc-----hhhh-h--cCcee--cCCHHHHHhcCCEEEEeccCc
Q psy7383 176 DTLGIVGL-GRIGSAVALRAK---AFGFNVIFYDPYLPD-----GIEK-S--LGLTR--VYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~---afG~~Vi~~dr~~~~-----~~~~-~--~gv~~--~~sLdelL~~sDvVil~lPlt 241 (501)
++|+|||. |.||+.+|..+. ..+.++..+|+.... +... . ..+.. ..++.+.++++|+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 999999998874 355688999976432 1111 0 01111 235567889999999987641
Q ss_pred hh---hhh-c------ccHH---HHhcCCCCcEEEEcCCC
Q psy7383 242 EH---NHH-L------INEF---TIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 ~~---T~~-l------I~~~---~l~~MK~gAilINvaRG 268 (501)
.. ++. + +-.+ .+....+.+++|+++-.
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 11 111 1 1122 33334578899999775
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.058 Score=55.11 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=49.2
Q ss_pred CeEEeeccchHHH-HHHHHHHhCC--CE-EEEECCCCCc--hhhhhcCce-ecCCHHHHHhc--CCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGS-AVALRAKAFG--FN-VIFYDPYLPD--GIEKSLGLT-RVYTLQDLLFQ--SDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~-~iA~~L~afG--~~-Vi~~dr~~~~--~~~~~~gv~-~~~sLdelL~~--sDvVil~lPlt 241 (501)
.+|||||+|.|++ ..+..++..+ ++ |.++|++... ...+.+++. .+.+++++|+. .|+|++++|..
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 5799999997774 5888888876 34 5567887643 345567764 45689999986 59999999954
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.072 Score=57.99 Aligned_cols=91 Identities=14% Similarity=0.021 Sum_probs=62.2
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh---hhcCceec--CCHHHHHhcCCEEEEeccCchhhh
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE---KSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~---~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
.+|+|++|.|||-|.++..=++.|..+|++|+++.+...++.. ....++.. .-.++.+..+++|+.++...+
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~--- 84 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA--- 84 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH---
Confidence 4699999999999999999899999999999999987654432 11112111 112456788998887754332
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINva 266 (501)
+|++....++...++||++
T Consensus 85 --~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 --VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred --HhHHHHHHHHHcCcEEEEC
Confidence 4555555555556666653
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.11 Score=50.44 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=33.3
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
+.|++++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46999999999999999999999999998 48888865
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.052 Score=53.88 Aligned_cols=89 Identities=11% Similarity=-0.011 Sum_probs=59.3
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh---hcCcee---cCCHHHHHhcCCEEEEeccCchhh
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK---SLGLTR---VYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~---~~gv~~---~~sLdelL~~sDvVil~lPlt~~T 244 (501)
-++++++|.|||-|.++..=++.|..+|++|+++.+...++... ...++. ... .+.+..+++|+.++..
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~-~~dl~g~~LViaATdD---- 95 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYD-KEFIKDKHLIVIATDD---- 95 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCC-hHHhCCCcEEEECCCC----
Confidence 35789999999999999998999999999999999887544321 111211 112 2346788888877542
Q ss_pred hhcccHHHHhcCCCCcEEEEc
Q psy7383 245 HHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINv 265 (501)
.-+|+...+..+.--++||+
T Consensus 96 -~~vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 96 -EKLNNKIRKHCDRLYKLYID 115 (223)
T ss_pred -HHHHHHHHHHHHHcCCeEEE
Confidence 22455555555554455664
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.1 Score=58.96 Aligned_cols=119 Identities=19% Similarity=0.250 Sum_probs=74.4
Q ss_pred CchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCC-EEEE
Q psy7383 125 GVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIF 203 (501)
Q Consensus 125 ~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~ 203 (501)
.....||.++-|=|-|+| |..-++. +...|++.+|.|||+|.+|..+|+.|.+.|. +++.
T Consensus 307 dP~~la~~avdlnlkLmk-------------WRllP~l------~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~Itl 367 (664)
T TIGR01381 307 DPKRLAERSVDLNLKLMK-------------WRLHPDL------QLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITF 367 (664)
T ss_pred CHHHHHHHHHHHHHHHHh-------------hhcCChh------hHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 456677777766555543 3322211 1245899999999999999999999999998 4666
Q ss_pred ECCCC------------C-chh----------h----hhc-------Cce-e-------c------------CCHHHHHh
Q psy7383 204 YDPYL------------P-DGI----------E----KSL-------GLT-R-------V------------YTLQDLLF 229 (501)
Q Consensus 204 ~dr~~------------~-~~~----------~----~~~-------gv~-~-------~------------~sLdelL~ 229 (501)
+|... . .+. + ++. ++. . + ..++++++
T Consensus 368 VD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~ 447 (664)
T TIGR01381 368 VDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIK 447 (664)
T ss_pred EcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHh
Confidence 66321 0 000 0 000 000 1 1 12567899
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
++|+|+.++ .+.++|.+++..-... +..+|+.+
T Consensus 448 ~~DvV~d~t-Dn~esR~L~n~~c~~~---~kplI~aA 480 (664)
T TIGR01381 448 DHDVVFLLL-DSREARWLPTVLCSRH---KKIAISAA 480 (664)
T ss_pred hCCEEEECC-CCHHHHHHHHHHHHHh---CCCEEEEE
Confidence 999998876 6888999887655443 44566554
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.25 Score=44.67 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=28.8
Q ss_pred eEEeeccchHHHHHHHHHHhCCC-EEEEECCCC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL 208 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~ 208 (501)
+|.|||+|.+|..+++.|...|. ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 699998653
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.097 Score=53.87 Aligned_cols=89 Identities=20% Similarity=0.159 Sum_probs=62.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHH-HHhcCCEEEEeccCchhhhhcccHH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQD-LLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLde-lL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
.|.+|.|.|.|.+|..+++.++.+|++|++.+++..+ +..+++|+..+.+..+ .-...|+++.+.... + . -..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence 4789999999999999999999999999998876543 5566777654422111 112457766654422 1 2 246
Q ss_pred HHhcCCCCcEEEEcCC
Q psy7383 252 TIKQMRPGAFLVNTAR 267 (501)
Q Consensus 252 ~l~~MK~gAilINvaR 267 (501)
.++.++++..++.++.
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 7788999999988774
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.094 Score=49.75 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=27.7
Q ss_pred eEEeeccchHHHHHHHHHHhCCCE-EEEECCC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFN-VIFYDPY 207 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~ 207 (501)
+|+|||+|.+|..+++.|...|.. +..+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999984 8888865
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.1 Score=56.15 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=70.9
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-h--hhh--cCceecC-C-HHHHHhcCCEEEEeccCch---
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-I--EKS--LGLTRVY-T-LQDLLFQSDCVSLHCTLNE--- 242 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~--~~~--~gv~~~~-s-LdelL~~sDvVil~lPlt~--- 242 (501)
+.+++|.|+|.|.+|.++|+.|...|++|.++|...... . .+. .|+.... . .++++.++|+|+..--..+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 568999999999999999999999999999999764321 1 111 2544221 1 2345678999987643322
Q ss_pred hhhh-------ccc-HHHHhc-CC---CCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 243 HNHH-------LIN-EFTIKQ-MR---PGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 243 ~T~~-------lI~-~~~l~~-MK---~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
..+. ++. .+++.. ++ ...+-|--+.|+.-...-|...|+...
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 2111 232 233333 32 245666667788777777777777533
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.3 Score=56.44 Aligned_cols=182 Identities=18% Similarity=0.100 Sum_probs=117.5
Q ss_pred CeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHH
Q psy7383 115 GIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRA 194 (501)
Q Consensus 115 GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L 194 (501)
.|+|.|. +.+ -+|--+++-+|+.+|-. | +.|...+|.|.|.|.-|..+|+.+
T Consensus 157 ~ipvf~D-D~q--GTa~v~lA~llnal~~~---------g----------------k~l~d~~iv~~GAGaAg~~ia~~l 208 (764)
T PRK12861 157 KIPVFHD-DQH--GTAITVSAAFINGLKVV---------G----------------KSIKEVKVVTSGAGAAALACLDLL 208 (764)
T ss_pred CCCeecc-ccc--hHHHHHHHHHHHHHHHh---------C----------------CChhHcEEEEECHhHHHHHHHHHH
Confidence 7899987 443 35666778888877743 1 247889999999999999999999
Q ss_pred HhCCC---EEEEECCCC-----Cch---hhhh-c-CceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcE
Q psy7383 195 KAFGF---NVIFYDPYL-----PDG---IEKS-L-GLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAF 261 (501)
Q Consensus 195 ~afG~---~Vi~~dr~~-----~~~---~~~~-~-gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAi 261 (501)
...|. +++.+|++- ... ..+. + ......+|.|+++.+|+++=. . +.++|+++.++.|.+..+
T Consensus 209 ~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~PI 283 (764)
T PRK12861 209 VDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARPL 283 (764)
T ss_pred HHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCCE
Confidence 99998 789998542 000 0010 0 001224899999999987653 2 268999999999999999
Q ss_pred EEEcCCCCccCHHHHHHHHHcCC-ceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCC-----CcHHHHHHHHHHHHHH
Q psy7383 262 LVNTARGGLVDDDSLAAALKQGR-IRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAF-----YSEASCTELREMAASE 335 (501)
Q Consensus 262 lINvaRG~vVde~aL~~aL~~g~-I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg-----~T~ea~~~~~~~~~~n 335 (501)
+.=.|....--..+.+.. ..|+ |.+- .-. +.| -+.-|+++-|=++- ....-.++|...+++.
T Consensus 284 IFaLsNPtpE~~pe~a~~-~~g~aivaT------Grs----~~p-nQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~a 351 (764)
T PRK12861 284 ILALANPTPEIFPELAHA-TRDDVVIAT------GRS----DYP-NQVNNVLCFPYIFRGALDVGATTITREMEIAAVHA 351 (764)
T ss_pred EEECCCCCccCCHHHHHh-cCCCEEEEe------CCc----CCC-CccceeeecchhhHHHHHcCCccCCHHHHHHHHHH
Confidence 999998764211122222 2244 4421 111 111 25568888887652 1222334566666666
Q ss_pred HHHHHh
Q psy7383 336 IRRAIV 341 (501)
Q Consensus 336 i~~~l~ 341 (501)
|..+..
T Consensus 352 lA~~~~ 357 (764)
T PRK12861 352 IAGLAE 357 (764)
T ss_pred HHhhCC
Confidence 666554
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.14 Score=52.73 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=46.5
Q ss_pred CeEEeeccchHHHHHHHHHHh-CCCEEEE-ECCCCCc---hhhhhcCceec-CCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKA-FGFNVIF-YDPYLPD---GIEKSLGLTRV-YTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~a-fG~~Vi~-~dr~~~~---~~~~~~gv~~~-~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||.|.||+..+..+.. -++++.+ +|+.... ...++.|+... .+.++++. +.|+|+++.|..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~ 75 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAK 75 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcH
Confidence 479999999999988766654 4677654 6665532 33555676533 47888886 578899998843
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.13 Score=54.90 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=56.2
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhh-cCceec----CCHHH----HHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKS-LGLTRV----YTLQD----LLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~-~gv~~~----~sLde----lL~~sDvVil~lPlt 241 (501)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.....- .... .++..+ .+.+. -+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 457899999999999999999999999999998765321 1111 122211 12222 256889988877744
Q ss_pred hhhhhcccHHHHhcCCCCcEEE
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLV 263 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilI 263 (501)
..+++-....+.+....+++
T Consensus 309 --~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 309 --EANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred --HHHHHHHHHHHHhCCCeEEE
Confidence 33444334444454444444
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.034 Score=58.57 Aligned_cols=64 Identities=25% Similarity=0.259 Sum_probs=43.3
Q ss_pred EEeeccchHHHHHHHHHHhCC-C-EEEEECCCCCch--hhhh---cCcee-------cCCHHHHHhcCCEEEEeccCc
Q psy7383 178 LGIVGLGRIGSAVALRAKAFG-F-NVIFYDPYLPDG--IEKS---LGLTR-------VYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG-~-~Vi~~dr~~~~~--~~~~---~gv~~-------~~sLdelL~~sDvVil~lPlt 241 (501)
|+|+|.|.+|+.+++.|...+ . +|++.||+.... .... ..++. ..+|+++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 689999999999999998776 4 899999986542 1111 11111 123677899999999999743
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.12 Score=53.22 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=31.6
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDP 206 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr 206 (501)
..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 46999999999999999999999999987 5666664
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.074 Score=51.05 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=32.8
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+++++|.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67899999986 7799999999999999999999864
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.19 Score=56.25 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=32.5
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
-.|++|.|.|. |.||+.+++.|...|++|++++|+..
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e 115 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ 115 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46788999985 99999999999999999999988753
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.12 Score=52.65 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=44.8
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchh-hhhcCceec-------CCHHHHHhcCCEEEEec
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGI-EKSLGLTRV-------YTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~-~~~~gv~~~-------~sLdelL~~sDvVil~l 238 (501)
++|.|.| .|.||+.+++.|...|++|.+.+|+..... ....+++.+ .++.+++..+|+|+.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 4788998 699999999999999999999988743211 112233221 24566788999887653
|
|
| >PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.23 Score=45.47 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=69.0
Q ss_pred HHHHHHHHhCCCEEEEECCC-----CCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEE
Q psy7383 188 SAVALRAKAFGFNVIFYDPY-----LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL 262 (501)
Q Consensus 188 ~~iA~~L~afG~~Vi~~dr~-----~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAil 262 (501)
=..+++|...|++|++=.-. .+.+.-...|+..+.+.+|++++||+|+-.=+.+ .+.+++|++|.++
T Consensus 17 P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~l 88 (136)
T PF05222_consen 17 PEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTL 88 (136)
T ss_dssp HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEE
T ss_pred HHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEE
Confidence 35677888889999986532 1222334467777767779999999998765533 5677889999999
Q ss_pred EEcCCCCccCHHHHHHHHHcCCceEEEEecCCC
Q psy7383 263 VNTARGGLVDDDSLAAALKQGRIRAAALDVHES 295 (501)
Q Consensus 263 INvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~ 295 (501)
|-...-. ....+++.|.+.++...++|....
T Consensus 89 i~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 89 IGFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred EEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 9887654 688999999999999777776543
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A .... |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.098 Score=55.90 Aligned_cols=87 Identities=22% Similarity=0.267 Sum_probs=57.3
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hh-------hhhcC-------------------cee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GI-------EKSLG-------------------LTR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~-------~~~~g-------------------v~~- 220 (501)
..|+..+|.|||+|.+|..+|+.|...|. +++.+|...-+ .+ ....| ++.
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 46999999999999999999999999987 57777743210 00 00011 111
Q ss_pred ---c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCC
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~ 258 (501)
+ .+..+++.++|+|+.++ .+.+++.++|+...+.-+|
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence 1 12346788899877664 5667888887666555433
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.28 Score=53.36 Aligned_cols=107 Identities=12% Similarity=0.159 Sum_probs=74.4
Q ss_pred ccCCeEEeecc----chHHHHHHHHHHhCCC--EEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 173 IRGDTLGIVGL----GRIGSAVALRAKAFGF--NVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 173 L~gktVGIVGl----G~IG~~iA~~L~afG~--~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
++=++|.|||. |++|..+.+.|+..|+ +|+..+++.. .-.|+..+.+++|+-...|++++++|.. .+..
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~----~i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~ 79 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG----EILGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQ 79 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC----ccCCccccCCHHHCCCCCCEEEEecCHH-HHHH
Confidence 45688999999 8899999999999887 7888887643 2346666668999877889999999943 3344
Q ss_pred cccHHHHhcCCCCcEEE-EcCCCCc-----cCHHHHHHHHHcCCce
Q psy7383 247 LINEFTIKQMRPGAFLV-NTARGGL-----VDDDSLAAALKQGRIR 286 (501)
Q Consensus 247 lI~~~~l~~MK~gAilI-NvaRG~v-----Vde~aL~~aL~~g~I~ 286 (501)
++ ++..+ ..-.+++| .-+-++. ..++.|.+..+++.+.
T Consensus 80 ~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 80 VV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred HH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 44 23333 34444444 3333332 2357888888888776
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.1 Score=51.47 Aligned_cols=38 Identities=29% Similarity=0.207 Sum_probs=33.9
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.+++|++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478899999985 99999999999999999999998753
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.19 Score=51.08 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCc---hh---hhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCc
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPD---GI---EKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~---~~---~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gA 260 (501)
|..||-.+...|++|+..+|+.+. +. ....|++.+++-.+..+.+.+.+|..|..+.|-++. ++.+..++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 567888899999999999998642 21 234688877777788999999999999998888876 68999999999
Q ss_pred EEEEcCCCCccCHHHHHHHH
Q psy7383 261 FLVNTARGGLVDDDSLAAAL 280 (501)
Q Consensus 261 ilINvaRG~vVde~aL~~aL 280 (501)
++.|+..-+.+ .|+..|
T Consensus 112 VicnTCT~sp~---vLy~~L 128 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL 128 (340)
T ss_pred EecccccCchh---HHHHHh
Confidence 99999885443 444444
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.15 Score=52.01 Aligned_cols=89 Identities=27% Similarity=0.326 Sum_probs=55.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCceecCC-----HH---HHHh--cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGLTRVYT-----LQ---DLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv~~~~s-----Ld---elL~--~sDvVil~lPlt 241 (501)
.|.+|.|+|.|.||..+++.++.+|++ |++.++.... ...+++|+..+.+ .+ ++.. ..|+|+-+....
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 489999999999999999999999999 9998875432 2334445432211 11 1222 356666554311
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. . ....++.++++..+|.++.
T Consensus 243 -~---~-~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 243 -A---A-RRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -H---H-HHHHHHHhhcCCEEEEEcC
Confidence 1 1 1344566777777776654
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.12 Score=49.97 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=33.1
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~ 207 (501)
+.|++++|.|||+|.+|..+++.|...|.. +..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 458999999999999999999999999985 8888855
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.12 Score=52.56 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=44.1
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhcCceecCCHHHH-HhcCCEEEEeccC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSLGLTRVYTLQDL-LFQSDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~gv~~~~sLdel-L~~sDvVil~lPl 240 (501)
++++.|+|.|..+++++..|...|+ +|.+++|+..+. +...++... .+++ ...+|+||.+.|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~---~~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEW---RPDLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcc---hhhcccccCCEEEECCcc
Confidence 4689999999999999999999998 599999986432 222222211 1111 2457888888874
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.23 Score=51.80 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=58.8
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecC------CHHHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVY------TLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~------sLdelL~~sDvVil~lPlt~~T~ 245 (501)
.|++|.|.|.|.||..+++.++.+|.+|++.+....+ ...+++|+..+. .+.++....|+|+-++- .+.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g-~~~-- 259 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS-AVH-- 259 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC-CHH--
Confidence 5889999999999999999999999999887755432 233455653221 12223334687776653 111
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.+ .+.++.++++..+|.++.
T Consensus 260 -~~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 260 -AL-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -HH-HHHHHHhcCCcEEEEeCC
Confidence 12 345677888888887764
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.16 Score=52.82 Aligned_cols=60 Identities=27% Similarity=0.488 Sum_probs=42.6
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh-h-cC-ceecCC---HHHHHhcCCEEEE
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-S-LG-LTRVYT---LQDLLFQSDCVSL 236 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-~-~g-v~~~~s---LdelL~~sDvVil 236 (501)
||||||-|..|+.+++.++.+|++|+++|......... . .- +....+ +.++++.||+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 59999999999999999999999999999875321111 1 00 011123 5667888998754
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.21 Score=56.10 Aligned_cols=69 Identities=14% Similarity=0.291 Sum_probs=48.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcC--c-eecCC---HHHHHhcCCEEEEecc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLG--L-TRVYT---LQDLLFQSDCVSLHCT 239 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~g--v-~~~~s---LdelL~~sDvVil~lP 239 (501)
.....|||||||-|..|+.+++.++.+|++|+++|............ + ....+ +.++.+++|+|+....
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 34788999999999999999999999999999999865321111000 0 01123 4556788999876544
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.052 Score=49.73 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=58.7
Q ss_pred CeEEeecc-chHHHHHHHHHHh--CCCEEEEECCCCCc--hhhhh-------cC--ceecCCHHHHHhcCCEEEEeccC-
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKA--FGFNVIFYDPYLPD--GIEKS-------LG--LTRVYTLQDLLFQSDCVSLHCTL- 240 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~a--fG~~Vi~~dr~~~~--~~~~~-------~g--v~~~~sLdelL~~sDvVil~lPl- 240 (501)
.+|+|||. |.+|+.+|-.|.. ++-++..+|..... +...+ .. ........+.+++||+|+++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 47999999 9999999999965 45689999987421 11110 11 11122456779999999998743
Q ss_pred -ch-hhhh-cc--c-------HHHHhcCCCCcEEEEcCCCCccCH
Q psy7383 241 -NE-HNHH-LI--N-------EFTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 241 -t~-~T~~-lI--~-------~~~l~~MK~gAilINvaRG~vVde 273 (501)
.+ +++. ++ | .+.+.+..+.+++|.++.. +|.
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNP--vd~ 123 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNP--VDV 123 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSS--HHH
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCc--HHH
Confidence 22 1221 11 1 1233444578888888543 653
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.21 Score=51.77 Aligned_cols=68 Identities=21% Similarity=0.107 Sum_probs=47.7
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchh---hhhc-----Cce-------ecCCHHHHHhcCCEEE
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGI---EKSL-----GLT-------RVYTLQDLLFQSDCVS 235 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~---~~~~-----gv~-------~~~sLdelL~~sDvVi 235 (501)
.+++++|.|.|. |.||+.+++.|...|++|.+.+|...... .... .+. ...+++++++.+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 467899999997 99999999999999999999987643210 0000 111 1123566788899887
Q ss_pred Eecc
Q psy7383 236 LHCT 239 (501)
Q Consensus 236 l~lP 239 (501)
.+..
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7654
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.27 Score=53.18 Aligned_cols=93 Identities=13% Similarity=0.227 Sum_probs=62.7
Q ss_pred cccCCeEEeecc----------chHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHH-HHhcCCEEEEecc
Q psy7383 172 RIRGDTLGIVGL----------GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQD-LLFQSDCVSLHCT 239 (501)
Q Consensus 172 ~L~gktVGIVGl----------G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLde-lL~~sDvVil~lP 239 (501)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||.... ...+.++.. .+++ .+..+|+|+++..
T Consensus 311 ~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~---~~~~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 311 NVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGII---PVSEVKSSHYDAIIVAVG 387 (425)
T ss_pred CCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcc---cchhhhhcCCCEEEEccC
Confidence 478999999999 467889999999999999999998543 222223322 1222 3678999999876
Q ss_pred CchhhhhcccHHHHh-cCCCCcEEEEcCCCCc
Q psy7383 240 LNEHNHHLINEFTIK-QMRPGAFLVNTARGGL 270 (501)
Q Consensus 240 lt~~T~~lI~~~~l~-~MK~gAilINvaRG~v 270 (501)
.. +-+. ++-+.+. .||...++||+ |+-+
T Consensus 388 h~-~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 388 HQ-QFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred CH-Hhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 43 3232 4444443 46645688884 6543
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.19 Score=48.67 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=32.4
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+.++++.|.|. |.||+.+++.|...|++|++++|+.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 67899999996 9999999999999999999988764
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.15 Score=51.94 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=51.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
.++++.|+|.|.||...++.++.+|++ |+++|+.... ....... .+..-++.-...|+|+-++... ..+ ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~----~~~-~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDP----SLI-DT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCH----HHH-HH
Confidence 577899999999999999999999998 5556654321 1111111 1111111112467777654421 111 34
Q ss_pred HHhcCCCCcEEEEcC
Q psy7383 252 TIKQMRPGAFLVNTA 266 (501)
Q Consensus 252 ~l~~MK~gAilINva 266 (501)
.++.|+++..++.++
T Consensus 217 ~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 217 LVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHhhhcCcEEEEEe
Confidence 567777777777765
|
|
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.71 Score=48.55 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=48.1
Q ss_pred c-cCCeEEeeccc-------hHHHHHHHHHHhCCCEEEEECC-C---CCchh-------hhhcC--ceecCCHHHHHhcC
Q psy7383 173 I-RGDTLGIVGLG-------RIGSAVALRAKAFGFNVIFYDP-Y---LPDGI-------EKSLG--LTRVYTLQDLLFQS 231 (501)
Q Consensus 173 L-~gktVGIVGlG-------~IG~~iA~~L~afG~~Vi~~dr-~---~~~~~-------~~~~g--v~~~~sLdelL~~s 231 (501)
+ .|+||+|++.| ++.++++..+..||++|.+..| . ..... .+..| +....++++.++++
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 6 78999776543 7888999999999999999998 3 22221 12223 44457899999999
Q ss_pred CEEEEec
Q psy7383 232 DCVSLHC 238 (501)
Q Consensus 232 DvVil~l 238 (501)
|+|..-.
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 9998643
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.45 Score=47.43 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=32.5
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45899999999999999999999998887 68888743
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.2 Score=53.62 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=53.4
Q ss_pred ccCCeEEeeccc----------hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG----------RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG----------~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~l 238 (501)
.+|++|+|+|+. .-...+++.|...|.+|.+|||...... .+++...++++++++.||+|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS--FFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh--hcCCeeeCCHHHHHHhCCEEEEcC
Confidence 478999999994 4677999999999999999999854432 447778889999999999998853
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.23 Score=50.24 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=31.5
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
.+.||++.|.|. |.||+.+|+.|...|++|++..+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 488999999975 899999999999999999876544
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.22 Score=52.54 Aligned_cols=88 Identities=22% Similarity=0.290 Sum_probs=53.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecC---C---HHHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVY---T---LQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~---s---LdelL~~sDvVil~lPlt~~T~ 245 (501)
.|++|.|.|.|.||..+++.++.+|++|++.+...+. ...+++|+..+- + +.++....|+|+-++.. +.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~-~~-- 254 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSA-EH-- 254 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCc-HH--
Confidence 5889999999999999999999999999998765322 233445543221 1 11222235666554421 11
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINva 266 (501)
.+ ...++.++++..+|.++
T Consensus 255 -~~-~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 255 -AL-LPLFSLLKVSGKLVALG 273 (375)
T ss_pred -HH-HHHHHhhcCCCEEEEEc
Confidence 11 23455566666666654
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.15 Score=55.39 Aligned_cols=108 Identities=15% Similarity=0.224 Sum_probs=65.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh-hhhc-Cceec-CCHHHHHhcCCEEEEeccC---chhh---
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI-EKSL-GLTRV-YTLQDLLFQSDCVSLHCTL---NEHN--- 244 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~-~~~~-gv~~~-~sLdelL~~sDvVil~lPl---t~~T--- 244 (501)
.|++|+|+|+|.-|.++|+.|+. |++|+++|....... .... ..... ....+.+.++|+||..=-. ++..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 57899999999999999999995 999999995432211 1111 00111 1123557789988775321 2211
Q ss_pred ----hhcccHH-HH-hcCCC-CcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 245 ----HHLINEF-TI-KQMRP-GAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 245 ----~~lI~~~-~l-~~MK~-gAilINvaRG~vVde~aL~~aL~~ 282 (501)
..++.+- ++ ..++. ..+=|--+.|+--...-|...|+.
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 1134333 32 33433 345555567887777777777876
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.13 Score=50.79 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=34.2
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.++.+|++.|.|- |.||+.+++.|...|++|++.+|+.
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3588999999987 8999999999999999999999864
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.18 Score=54.03 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=68.1
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh--hhhcCceecC--CHHHHHhcCCEEEEeccCchhhhh--
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI--EKSLGLTRVY--TLQDLLFQSDCVSLHCTLNEHNHH-- 246 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~--~~~~gv~~~~--sLdelL~~sDvVil~lPlt~~T~~-- 246 (501)
+.+++|.|||+|..|++.++.|+..|.+|.++|....... ....|+.... ...+.+...|+||.. |.-+...-
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~s-pgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVAS-PGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEEC-CCCCCCCHHH
Confidence 5688999999999999999999999999999996543211 1122543321 123456778876654 43221111
Q ss_pred ---------cccH-HHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 247 ---------LINE-FTIKQ-MRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 247 ---------lI~~-~~l~~-MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
++.+ +++.. ++...+-|--+.|+--...-|...|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2332 33333 333345566667887777777777775
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.16 Score=54.19 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=55.8
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhh-------h---------------hcC----cee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIE-------K---------------SLG----LTR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~-------~---------------~~g----v~~- 220 (501)
..|++++|.|||+|.+|..+|+.|...|. ++..+|...-+ .+. . +.+ ++.
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 45899999999999999999999998887 57787743210 000 0 000 110
Q ss_pred ---c--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhc
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~ 255 (501)
+ .+.+++++++|+|+.++ .+.+++.++|+...+.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~ 156 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVLA 156 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 1 12356788889887654 5667788887665554
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.14 Score=49.26 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=33.3
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+.++++.|+|. |.||+.+++.|...|++|++.+|+..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 67899999985 89999999999999999999998753
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.29 Score=52.94 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=62.7
Q ss_pred CeEEeeccchHHHHHHHHHHhC----------CCEE-EEECCCCCchhh-hhcCceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF----------GFNV-IFYDPYLPDGIE-KSLGLTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af----------G~~V-i~~dr~~~~~~~-~~~gv~~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||+|+|.||+.+++.+... +.+| .++|++...... ...+.....++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4799999999999999887542 4554 346765432111 1112334468899986 469999887643
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHcCCce
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGGLV-DDDSLAAALKQGRIR 286 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~vV-de~aL~~aL~~g~I~ 286 (501)
.-...+ ..+.|+.|--+|..--.-+. .-+.|.++.++....
T Consensus 84 ~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 84 EPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 221211 22445555555543222222 336777887777654
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.21 Score=51.61 Aligned_cols=45 Identities=29% Similarity=0.444 Sum_probs=36.0
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv 218 (501)
.|.+|.|+|.|.||..+++.++..|.+|++.+++..+ ...+++|+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 4789999999999999999999999999999876432 33344454
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.41 Score=49.92 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=60.8
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC-------EEEEECCCCCc----hhhhh--c-------CceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF-------NVIFYDPYLPD----GIEKS--L-------GLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~-------~Vi~~dr~~~~----~~~~~--~-------gv~~~~sLdelL~~sDvV 234 (501)
++|+|||. |.+|..+|-.|...|. ++..+|..... +.... . .+....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999999976655 79999974321 11100 0 111123445789999999
Q ss_pred EEeccCch---hhhh-cc--cH-------HHHhcCC-CCcEEEEcCCCCccCHHHHH
Q psy7383 235 SLHCTLNE---HNHH-LI--NE-------FTIKQMR-PGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 235 il~lPlt~---~T~~-lI--~~-------~~l~~MK-~gAilINvaRG~vVde~aL~ 277 (501)
+++.-... +|+- ++ |. ..+.... +.+++|+++ ..+|.-..+
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 137 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI 137 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence 99865311 1221 11 11 2233334 588999987 456655443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.44 Score=49.75 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=60.2
Q ss_pred eEEeecc-chHHHHHHHHHHhCCC-------EEEEECCCC--Cchhhhhc-----------CceecCCHHHHHhcCCEEE
Q psy7383 177 TLGIVGL-GRIGSAVALRAKAFGF-------NVIFYDPYL--PDGIEKSL-----------GLTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 177 tVGIVGl-G~IG~~iA~~L~afG~-------~Vi~~dr~~--~~~~~~~~-----------gv~~~~sLdelL~~sDvVi 235 (501)
+|+|+|. |.||+.+|..|...+. ++..+|... +....... +........+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999999876442 588899865 21110000 1111135668899999999
Q ss_pred EeccC--ch-hhhh--------ccc--HHHHhcC-CCCcEEEEcCCCCccCHHHHH
Q psy7383 236 LHCTL--NE-HNHH--------LIN--EFTIKQM-RPGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 236 l~lPl--t~-~T~~--------lI~--~~~l~~M-K~gAilINvaRG~vVde~aL~ 277 (501)
++.-. .+ +|+. ++. ...+... ++++++|.++ ..+|.-..+
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 135 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI 135 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence 87543 11 2221 110 1233444 5888888886 556655443
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.18 Score=52.72 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=58.9
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHh--CCCEEEEECCCCCchhhhh-------cCceecCC---HHHHHhcCCEEEEecc
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKA--FGFNVIFYDPYLPDGIEKS-------LGLTRVYT---LQDLLFQSDCVSLHCT 239 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~a--fG~~Vi~~dr~~~~~~~~~-------~gv~~~~s---LdelL~~sDvVil~lP 239 (501)
++.++|+|+|. |.||..+|..|.. ...++..+|.....+.... ..+....+ ..+.+++||+|++++-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 56779999999 9999999999984 4468999998432221111 11211111 2578999999998765
Q ss_pred Cch---hhh-hccc------HH---HHhcCCCCcEEEEcCCC
Q psy7383 240 LNE---HNH-HLIN------EF---TIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt~---~T~-~lI~------~~---~l~~MK~gAilINvaRG 268 (501)
... +++ .++. .+ .+..-.+..+++.++-+
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP 127 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 421 111 1221 12 33334567788887765
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.12 Score=45.23 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=60.5
Q ss_pred ccchHHHHHHHHHHhC----CCEEEE-ECCC--CCch-hhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhcccHH
Q psy7383 182 GLGRIGSAVALRAKAF----GFNVIF-YDPY--LPDG-IEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 182 GlG~IG~~iA~~L~af----G~~Vi~-~dr~--~~~~-~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI~~~ 251 (501)
|+|.||+.+++.+... +++|.+ +|++ .... .....+.....++++++. +.|+|+=|.... ... +-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~-~~~----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSE-AVA----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCH-HHH----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCch-HHH----HH
Confidence 8999999999999865 677554 5665 1111 111122345568999998 999999885432 222 23
Q ss_pred HHhcCCCCcEEEEcCCCCcc---CHHHHHHHHHcCCce
Q psy7383 252 TIKQMRPGAFLVNTARGGLV---DDDSLAAALKQGRIR 286 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vV---de~aL~~aL~~g~I~ 286 (501)
..+.|+.|.-+|-.+-+.+. ..+.|.++.+++...
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~ 113 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKNGVR 113 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-E
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCE
Confidence 44556788889998888887 334555666655543
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.38 Score=50.34 Aligned_cols=109 Identities=20% Similarity=0.315 Sum_probs=65.3
Q ss_pred eEEeeccchHHHHHHHHHHh--------CCCEEEE-ECCCC----Cchh----h---hhcC-c--eecC--CHHHHH-hc
Q psy7383 177 TLGIVGLGRIGSAVALRAKA--------FGFNVIF-YDPYL----PDGI----E---KSLG-L--TRVY--TLQDLL-FQ 230 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~a--------fG~~Vi~-~dr~~----~~~~----~---~~~g-v--~~~~--sLdelL-~~ 230 (501)
+|+|+|||.+|+.+++.|.. ++.+|.+ +|++. ..+. . ...+ + .... ++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999976 5667554 45442 1110 0 0001 1 0111 466664 46
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHcCCce
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLV-DDDSLAAALKQGRIR 286 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vV-de~aL~~aL~~g~I~ 286 (501)
+|+|+=+.+...+-..- -.-..+.|+.|.-+|-..-+.+. ..+.|.++.+++...
T Consensus 82 ~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 82 PDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred CCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence 89999888643210101 12234556778888887777764 567777777776654
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.54 Score=48.91 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=50.4
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hh-------hhhcC-ceecCCHHHHHhcCCEEEEe
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GI-------EKSLG-LTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~-------~~~~g-v~~~~sLdelL~~sDvVil~ 237 (501)
+.|+||++||- +++.++++..+..+|++|.+..|..-. .. .+..+ +....++++.++++|+|..-
T Consensus 151 l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 151 LNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 78999999997 789999999999999999999875421 10 11122 44456899999999999874
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.12 Score=56.11 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=68.8
Q ss_pred CeEEeeccchHHHHHHH--HH---HhC-CCEEEEECCCCCchh---------hhhcC----ceecCCHHHHHhcCCEEEE
Q psy7383 176 DTLGIVGLGRIGSAVAL--RA---KAF-GFNVIFYDPYLPDGI---------EKSLG----LTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~--~L---~af-G~~Vi~~dr~~~~~~---------~~~~g----v~~~~sLdelL~~sDvVil 236 (501)
++|+|||.|.+|...+- .+ .++ +.+|+.+|....... ....+ +....++.+.+++||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 47999999999955433 22 233 569999997643211 01111 2334577899999999999
Q ss_pred eccCc--h--------------------hhh-------hccc-------HHHHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q psy7383 237 HCTLN--E--------------------HNH-------HLIN-------EFTIKQMRPGAFLVNTARGGLVDDDSLAAAL 280 (501)
Q Consensus 237 ~lPlt--~--------------------~T~-------~lI~-------~~~l~~MK~gAilINvaRG~vVde~aL~~aL 280 (501)
++-.. . +|. .+-+ .+.++...|+++|||++...=+-..++. .+
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence 98753 1 110 0001 2344455689999999987544555555 33
Q ss_pred HcCCceEEE
Q psy7383 281 KQGRIRAAA 289 (501)
Q Consensus 281 ~~g~I~GAa 289 (501)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 455676644
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.51 Score=48.82 Aligned_cols=110 Identities=19% Similarity=0.229 Sum_probs=64.1
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC--EEEEECCCC--Cch------hhh---hcC----ceecCCHHHHHhcCCEEEEe
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF--NVIFYDPYL--PDG------IEK---SLG----LTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~--~Vi~~dr~~--~~~------~~~---~~g----v~~~~sLdelL~~sDvVil~ 237 (501)
++|+|+|. |.+|..++..|...|. +|+.+|+.. ... ... ..+ +....+. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 47999997 9999999999988876 599999843 111 000 011 1111243 459999999999
Q ss_pred ccCch---hhh--------hccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHH----HHHcCCceEE
Q psy7383 238 CTLNE---HNH--------HLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAA----ALKQGRIRAA 288 (501)
Q Consensus 238 lPlt~---~T~--------~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~----aL~~g~I~GA 288 (501)
..... +++ .++. ...+....+.+++|+++ ..+|.-..+- -+..+++.|.
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeec
Confidence 85311 121 1111 12334445677787776 3455444322 2344556655
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.14 Score=53.45 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=43.5
Q ss_pred eEEeeccchHHHH-HHHHHHh--CCCEEE-EECCCCCch-hhhhcC-ceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 177 TLGIVGLGRIGSA-VALRAKA--FGFNVI-FYDPYLPDG-IEKSLG-LTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 177 tVGIVGlG~IG~~-iA~~L~a--fG~~Vi-~~dr~~~~~-~~~~~g-v~~~~sLdelL~--~sDvVil~lPlt 241 (501)
+|||||+|.|++. .+..+.. -+++|. ++|+..... ..+.++ +..+.+++++|. +.|+|++++|..
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 7999999998864 3454433 357775 578764322 223343 444568999996 579999999854
|
|
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.15 Score=52.83 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=67.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhc--------------CceecCC----------HHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSL--------------GLTRVYT----------LQD 226 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~--------------gv~~~~s----------Lde 226 (501)
.....++-++|+|-+|-..+......|+-|..+|-+... +..++. |+....+ +.+
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~ 240 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE 240 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999854311 111111 1111111 345
Q ss_pred HHhcCCEEEEec--cCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 227 LLFQSDCVSLHC--TLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 227 lL~~sDvVil~l--Plt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
..++.||||... |.. ..-.|+.++..+.||+|+++||.+
T Consensus 241 ~~~~~DivITTAlIPGr-pAP~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 241 QAKEVDIVITTALIPGR-PAPKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HhcCCCEEEEecccCCC-CCchhhHHHHHHhcCCCcEEEEeh
Confidence 678999998753 333 345688999999999999999985
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.27 Score=50.21 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=54.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCH------HHHHhcCCEEEEeccCchhhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTL------QDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sL------delL~~sDvVil~lPlt~~T~~ 246 (501)
.|.+|.|.|.|.+|+.+++.++.+|++|++.++.... ...+.+++..+.+. +++-...|+|+.+++..
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~----- 243 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSAS----- 243 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCc-----
Confidence 4678999999999999999999999999999876432 22233443321110 11123456666555421
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaR 267 (501)
....+.++.++++..+|+++.
T Consensus 244 ~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 244 HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred chHHHHHHHhcCCCEEEEEec
Confidence 112445566666666666653
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.51 Score=51.19 Aligned_cols=111 Identities=22% Similarity=0.141 Sum_probs=70.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc------hhhhhcCceecC-CHHHHHhcCCEEEEeccCchhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD------GIEKSLGLTRVY-TLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~------~~~~~~gv~~~~-sLdelL~~sDvVil~lPlt~~T 244 (501)
.+.+++|.|||.|.+|.++|+.|+..|++|.++|..... ...++.|++... .-.++...+|+|++..-..+.+
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~ 92 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDA 92 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCC
Confidence 477899999999999999999999999999999965421 112234654321 1112445789998876332221
Q ss_pred h--------h--cccH-HHH-hcCCC----CcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 245 H--------H--LINE-FTI-KQMRP----GAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 245 ~--------~--lI~~-~~l-~~MK~----gAilINvaRG~vVde~aL~~aL~~ 282 (501)
. + ++++ +++ ..+.+ ..+-|--+.|+.-...-|...|+.
T Consensus 93 ~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 93 PLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred HHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 1 1 2332 232 33422 245566667887777777777765
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.45 Score=51.04 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=64.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHH--hcCCEEEEe--ccC-chh---hhhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLL--FQSDCVSLH--CTL-NEH---NHHL 247 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL--~~sDvVil~--lPl-t~~---T~~l 247 (501)
++|.|+|+|..|.++|+.|+ .|.+|+++|........+..|+... + ++.+ .++|+|+.. +|. +++ .+.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~i 77 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKNL 77 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHHH
Confidence 36899999999999999999 9999999995532221223455442 2 2334 468988765 232 222 1223
Q ss_pred ccHH-HHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 248 INEF-TIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 248 I~~~-~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+.+- ++..+.+..+-|--+.|+.-...-|...|++
T Consensus 78 ~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 78 ISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred hhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 3322 3333223356666678887777777777775
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.2 Score=52.46 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=24.8
Q ss_pred eEEeeccchHHHHHHHHHHhCC----CEEEEECC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFG----FNVIFYDP 206 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr 206 (501)
+|||+|+|+||+.+.+.|...+ ++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 5899999999999999987653 78777653
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.73 Score=52.85 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=93.1
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCC--chhhh----------------------hcC----cee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLP--DGIEK----------------------SLG----LTR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~--~~~~~----------------------~~g----v~~- 220 (501)
..|++++|+|||+|.+|..++..|...|. ++..+|...- ..+.+ +.+ ++.
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF 118 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 45999999999999999999999998887 4666653210 00000 000 111
Q ss_pred ---c--CCHHHHHhcCCEEEEeccC-chhhhhcccHHHHhcCCCCcEEEEcCC----CCccCHHHHHHHHHcCCceEEEE
Q psy7383 221 ---V--YTLQDLLFQSDCVSLHCTL-NEHNHHLINEFTIKQMRPGAFLVNTAR----GGLVDDDSLAAALKQGRIRAAAL 290 (501)
Q Consensus 221 ---~--~sLdelL~~sDvVil~lPl-t~~T~~lI~~~~l~~MK~gAilINvaR----G~vVde~aL~~aL~~g~I~GAaL 290 (501)
+ .++++++.++|+|+-++-. +-+++.++++... +.+.-+|..+- |.+. ...-+.+ ..-
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~---~~~iP~i~~g~~G~~g~~~-------~~~p~~~--~~~ 186 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR---EKGIPVITAGPLGYSSAML-------VFTPQGM--GFD 186 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH---HCCCCEEEeecccccceEE-------EEcCCCC--CHh
Confidence 1 2356778889988876632 2345566665432 23444555431 1110 0000000 012
Q ss_pred ecCCCCCC-----------------CCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q psy7383 291 DVHESEPY-----------------NVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIP 345 (501)
Q Consensus 291 DVfe~EPl-----------------~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p 345 (501)
|.|+.+|. +. -+...+..+|=++-+-+-.+.-+......++.....+++.|+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~g~~p~~~-~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (679)
T PRK14851 187 DYFNIGGKMPEEQKYLRFAMGLAPRPT-HIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGG 257 (679)
T ss_pred HhccCCCCCChHHHHHHHHhcCCCcch-hhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCe
Confidence 23333332 11 23344666777788888777788888888888888888877644
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.35 Score=46.29 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=31.3
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
.+.+|++.|.|. |.||+.+|+.|...|++|+...++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~ 39 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAG 39 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 377899999985 899999999999999999877553
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.17 Score=58.27 Aligned_cols=83 Identities=22% Similarity=0.242 Sum_probs=57.9
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCC------Cch-------------hhh----hc----Cceec
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYL------PDG-------------IEK----SL----GLTRV 221 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~------~~~-------------~~~----~~----gv~~~ 221 (501)
..|++++|+|||+| +|+.+|..|...|. +++.+|... ... ..+ +. .++.+
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 46999999999999 99999999998884 777776321 000 000 00 11111
Q ss_pred ------CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhc
Q psy7383 222 ------YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255 (501)
Q Consensus 222 ------~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~ 255 (501)
.++++++.++|+|+-|+ .+-+++.++|+...++
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~-D~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEEC-DSLDVKVLLREAARAR 220 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHc
Confidence 25778899999998876 4678999998766655
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.38 Score=49.64 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=56.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHh-CC-CEEEEECCCCCc-hhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhcc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKA-FG-FNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~a-fG-~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI 248 (501)
.|.+|.|+|.|.||..+++.++. +| .+|++.|++..+ +..+..+... ..+++.. ..|+|+-++... .+...+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G~~-~~~~~~ 239 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVGGR-GSQSAI 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCCCC-ccHHHH
Confidence 47899999999999999998886 54 689999976533 2333333221 2233322 368887766421 011122
Q ss_pred cHHHHhcCCCCcEEEEcC
Q psy7383 249 NEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 249 ~~~~l~~MK~gAilINva 266 (501)
.+.++.++++..+|.++
T Consensus 240 -~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 240 -NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred -HHHHHhCcCCcEEEEEe
Confidence 35677888888888775
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.28 Score=49.49 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=31.1
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+++|.|.| .|.||+.+++.|...|++|+++++..
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 368999999 79999999999999999999887654
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.24 Score=51.75 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=61.5
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCC--CEEEEECCCCCchhhhh-------cCcee---cCCHHHHHhcCCEEEEecc
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFG--FNVIFYDPYLPDGIEKS-------LGLTR---VYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG--~~Vi~~dr~~~~~~~~~-------~gv~~---~~sLdelL~~sDvVil~lP 239 (501)
...+||+|+|. |++|..+|..|...+ -++..+|.....+.... ..+.. ..++.+.+++||+|+++.-
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 34579999999 999999999998544 48999997652221111 11111 1244688999999999865
Q ss_pred Cch---hhhh-cc--c-------HHHHhcCCCCcEEEEcCCCC
Q psy7383 240 LNE---HNHH-LI--N-------EFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 240 lt~---~T~~-lI--~-------~~~l~~MK~gAilINvaRG~ 269 (501)
... +++. ++ | .+.+....+.+++|+++---
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 311 1221 11 1 12334445889999998753
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.16 Score=49.10 Aligned_cols=64 Identities=22% Similarity=0.145 Sum_probs=48.0
Q ss_pred EEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchh---hhhcCceec-------CCHHHHHhcCCEEEEeccCc
Q psy7383 178 LGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGI---EKSLGLTRV-------YTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 178 VGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~---~~~~gv~~~-------~sLdelL~~sDvVil~lPlt 241 (501)
|.|+|. |.+|+.+++.|...+++|.+.-|..+... .+..|++.+ .+|.++++.+|.|+++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 578885 99999999999999999999988764322 233454422 24566799999999999843
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.6 Score=50.25 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=67.9
Q ss_pred ccC-CeEEeeccchHHHHHHHHHHhC--CCEEEEECCCCCchhh--hhcCceecCC--HHHHHhcCCEEEEeccC---ch
Q psy7383 173 IRG-DTLGIVGLGRIGSAVALRAKAF--GFNVIFYDPYLPDGIE--KSLGLTRVYT--LQDLLFQSDCVSLHCTL---NE 242 (501)
Q Consensus 173 L~g-ktVGIVGlG~IG~~iA~~L~af--G~~Vi~~dr~~~~~~~--~~~gv~~~~s--LdelL~~sDvVil~lPl---t~ 242 (501)
+.+ ++|.|||+|.+|++.++.|... |++|.++|........ ...|++.... -.+.+.++|+|+..--. .+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p 83 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALATP 83 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCCH
Confidence 556 7899999999999999999887 6899999965432111 1125543211 23446789988765322 22
Q ss_pred hhh-------hcccH-HHH-hcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 243 HNH-------HLINE-FTI-KQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 243 ~T~-------~lI~~-~~l-~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+.+ .++.+ +++ ..++...+-|--+-|+.-...-|...|+.
T Consensus 84 ~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 84 EIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 211 13322 333 33454455666677887777777777775
|
|
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.56 Score=50.41 Aligned_cols=66 Identities=17% Similarity=0.317 Sum_probs=49.8
Q ss_pred cccCCeEEeecc-----c---hHHHHHHHHHHhCCCEEEEECCCC---Cchh-------hhhcC--ceecCCHHHHHhcC
Q psy7383 172 RIRGDTLGIVGL-----G---RIGSAVALRAKAFGFNVIFYDPYL---PDGI-------EKSLG--LTRVYTLQDLLFQS 231 (501)
Q Consensus 172 ~L~gktVGIVGl-----G---~IG~~iA~~L~afG~~Vi~~dr~~---~~~~-------~~~~g--v~~~~sLdelL~~s 231 (501)
.+.|+||+|+|- | ++.++++..+..+|++|.+..|.. .+.. .+..| +....++++.++++
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 378999999985 5 566899999999999999998763 1221 12234 34457899999999
Q ss_pred CEEEEe
Q psy7383 232 DCVSLH 237 (501)
Q Consensus 232 DvVil~ 237 (501)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999875
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.4 Score=50.33 Aligned_cols=45 Identities=36% Similarity=0.471 Sum_probs=36.1
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv 218 (501)
.|++|.|+|.|.||..+++.++.+|. +|++.++.... +..+++|+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 58899999999999999999999999 69988876432 33444554
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.34 Score=50.54 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=57.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-----CH-HHHH---h-cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-----TL-QDLL---F-QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-----sL-delL---~-~sDvVil~lPlt 241 (501)
.|.+|.|+|.|.||..+++.++..|+ +|++.++...+ +..+++|+..+. ++ +++. . ..|+|+-++..
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~- 269 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGS- 269 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCC-
Confidence 47899999999999999999999999 69998876432 344555553221 11 1111 1 36777766532
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+++ + ...++.++++..+|.++-
T Consensus 270 ~~~---~-~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 270 VPA---L-ETAYEITRRGGTTVTAGL 291 (371)
T ss_pred hHH---H-HHHHHHHhcCCEEEEEcc
Confidence 111 1 345667777877777653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.36 Score=48.10 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=44.2
Q ss_pred eEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhh-----hcCceecCCHHHHH------hc-CCEEEEeccCc
Q psy7383 177 TLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-----SLGLTRVYTLQDLL------FQ-SDCVSLHCTLN 241 (501)
Q Consensus 177 tVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-----~~gv~~~~sLdelL------~~-sDvVil~lPlt 241 (501)
+|.|+|. |.||+.+++.|...|++|.+..|+....... ...+...+++.+++ .. +|.|+++.+..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 3677776 9999999999999999999999876422110 11111123455566 45 89999887753
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.33 Score=50.45 Aligned_cols=95 Identities=18% Similarity=0.304 Sum_probs=60.1
Q ss_pred eEEeecc-chHHHHHHHHHHhCCC--EEEEECCCCCchhhh--hc-----Cceec--C-CHHHHHhcCCEEEEeccCch-
Q psy7383 177 TLGIVGL-GRIGSAVALRAKAFGF--NVIFYDPYLPDGIEK--SL-----GLTRV--Y-TLQDLLFQSDCVSLHCTLNE- 242 (501)
Q Consensus 177 tVGIVGl-G~IG~~iA~~L~afG~--~Vi~~dr~~~~~~~~--~~-----gv~~~--~-sLdelL~~sDvVil~lPlt~- 242 (501)
||+|||. |.+|..+|-.|...+. ++..+|.....+... .. .+... . ++.+.+++||+|+++.-...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999999876554 899999765222111 11 11111 1 24678999999999876421
Q ss_pred --hhh--------hccc--HHHHhcCCCCcEEEEcCCCCccCH
Q psy7383 243 --HNH--------HLIN--EFTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 243 --~T~--------~lI~--~~~l~~MK~gAilINvaRG~vVde 273 (501)
+++ .++. .+.+..-.+++++|+++-. +|.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP--vDv 121 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP--VNS 121 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc--hhh
Confidence 111 1221 1234445789999999765 554
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.5 Score=47.62 Aligned_cols=91 Identities=20% Similarity=0.150 Sum_probs=58.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCC-----------CEEEEECCCCCc--hhh------------------hh----cCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFG-----------FNVIFYDPYLPD--GIE------------------KS----LGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG-----------~~Vi~~dr~~~~--~~~------------------~~----~gv 218 (501)
+..+|.|||+|.+|..+++.|...| .+++++|...-+ .+. +. .++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~ 89 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT 89 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence 5689999999999999999998753 388999853210 000 00 111
Q ss_pred --eec---CCHHHHHhcCCEEEEeccCchhhhhcccHHHHh--cCCCCcEEEEcCC
Q psy7383 219 --TRV---YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK--QMRPGAFLVNTAR 267 (501)
Q Consensus 219 --~~~---~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~--~MK~gAilINvaR 267 (501)
+.. .+.++++.++|+|+.|+ .+-+++..|++...+ .| ..++|+++.
T Consensus 90 ~i~a~~~~~~~~~~~~~~DiVi~av-Dn~~aR~~l~~~~~~~~~~--~~~~ld~Gn 142 (244)
T TIGR03736 90 DWTAHPERVERSSTLHRPDIVIGCV-DNRAARLAILRAFEGGYSG--YAYWLDLGN 142 (244)
T ss_pred eEEEEEeeeCchhhhcCCCEEEECC-CCHHHHHHHHHHHHHhccc--ccceecccC
Confidence 110 01134567789888876 566788888776655 23 357788775
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.41 Score=51.30 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=32.4
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDP 206 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr 206 (501)
..|++++|+|||+|.+|..++..|...|. +++.+|.
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 46899999999999999999999999987 6888874
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.37 Score=48.95 Aligned_cols=88 Identities=23% Similarity=0.195 Sum_probs=57.4
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec------CCHHHHHh-----cCCEEEEeccC
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV------YTLQDLLF-----QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~------~sLdelL~-----~sDvVil~lPl 240 (501)
.|.+|.|.| .|.+|+.+++.++.+|++|++.+++... +..+++|++.+ .++.+.+. ..|+|+-++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G- 216 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG- 216 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC-
Confidence 578999999 5999999999999999999988765422 33344554321 12222221 3567665543
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. .. + ...++.++++..+|.++.
T Consensus 217 ~---~~-~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 217 G---EF-S-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred H---HH-H-HHHHHHhCcCcEEEEecc
Confidence 1 11 2 456777888888887764
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.3 Score=51.65 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=57.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCch--hhh----h---cC-ceec--CCHHHHHhcCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPDG--IEK----S---LG-LTRV--YTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~~--~~~----~---~g-v~~~--~sLdelL~~sDvVil~lPlt 241 (501)
++|+|||.|.+|..+|-.|...+. ++..+|...... ... . .+ .... .+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999999976665 799999865321 111 0 11 1111 233 4489999999985431
Q ss_pred ---hhhh-hcc--c-------HHHHhcCCCCcEEEEcCC
Q psy7383 242 ---EHNH-HLI--N-------EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ---~~T~-~lI--~-------~~~l~~MK~gAilINvaR 267 (501)
.+|+ .++ | .+.+....+.+++|+++-
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1223 111 1 223444568899999984
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.48 Score=49.63 Aligned_cols=90 Identities=26% Similarity=0.257 Sum_probs=61.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhh-cCceecCCH-H--------HHH--hcCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKS-LGLTRVYTL-Q--------DLL--FQSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~-~gv~~~~sL-d--------elL--~~sDvVil~lP 239 (501)
.+.+|.|+|.|.||...+..++.+|. +|++.|++..+ +.+++ .+...+.+. + ++. ..+|+++-++-
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 34499999999999999999999996 67788877543 44444 444322211 1 222 24899998876
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
++. . -.+.++.++++..++.++=.
T Consensus 248 -~~~---~-~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 -SPP---A-LDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred -CHH---H-HHHHHHHhcCCCEEEEEecc
Confidence 222 1 24677888999888888754
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.27 Score=51.31 Aligned_cols=96 Identities=8% Similarity=0.052 Sum_probs=58.9
Q ss_pred eEEeecc-chHHHHHHHHHHhCC-------CEEEEECCCCCch--hhhhc-----------CceecCCHHHHHhcCCEEE
Q psy7383 177 TLGIVGL-GRIGSAVALRAKAFG-------FNVIFYDPYLPDG--IEKSL-----------GLTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 177 tVGIVGl-G~IG~~iA~~L~afG-------~~Vi~~dr~~~~~--~~~~~-----------gv~~~~sLdelL~~sDvVi 235 (501)
+|+|+|. |.+|+.++..|...+ .+|..+|+..... ..... .+....++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999998744 4899999854211 11010 1111245668899999998
Q ss_pred EeccCch---hhhh-cc--cH-------HHHhcC-CCCcEEEEcCCCCccCHH
Q psy7383 236 LHCTLNE---HNHH-LI--NE-------FTIKQM-RPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 236 l~lPlt~---~T~~-lI--~~-------~~l~~M-K~gAilINvaRG~vVde~ 274 (501)
.+.-... +++. ++ |. ..+... ++++++|.++- .+|.-
T Consensus 84 ~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~ 134 (325)
T cd01336 84 LVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN--PANTN 134 (325)
T ss_pred EeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC--cHHHH
Confidence 8765421 1211 11 21 233334 57888998873 45443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.27 Score=49.73 Aligned_cols=91 Identities=23% Similarity=0.211 Sum_probs=57.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCceecC-----CHH--HH--HhcCCEEEEeccCch
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGLTRVY-----TLQ--DL--LFQSDCVSLHCTLNE 242 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv~~~~-----sLd--el--L~~sDvVil~lPlt~ 242 (501)
.|.+|.|+|.|.+|+.+++.+++.|++ |++.+++... ...+..++..+. +.. .. -...|+++.++...
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~- 237 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP- 237 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh-
Confidence 578999999999999999999999998 7888765432 222233332110 111 11 13467877665321
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
....+.++.|+++..+|+++...
T Consensus 238 ----~~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 238 ----KTLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred ----HHHHHHHHHHhcCCEEEEEecCC
Confidence 12245567778888888877643
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.28 Score=48.50 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=31.5
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.++++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~ 38 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD 38 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4688999985 89999999999999999999988643
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.26 Score=45.30 Aligned_cols=68 Identities=21% Similarity=0.180 Sum_probs=46.9
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-C----CHHHHHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-Y----TLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-~----sLdelL~~sDvVil~lPlt 241 (501)
.+++++.+||+| -|..+|..|+..|++|++.|.+... ...+..+...+ + .--++.+.+|+|-..-|-.
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~ 88 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR 88 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH
Confidence 356889999999 9999999999999999999987542 12222333211 1 1235677888877666533
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.57 Score=47.51 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhC----CC-----
Q psy7383 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAF----GF----- 199 (501)
Q Consensus 129 VAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~af----G~----- 199 (501)
+|--+++-+|+.+|.. | ..|++.+|.|+|.|..|-.+|+.+... |.
T Consensus 4 TaaV~lAgll~Al~~~---------g----------------~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA 58 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVT---------G----------------KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEA 58 (255)
T ss_dssp HHHHHHHHHHHHHHHH---------T----------------S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHH
T ss_pred hHHHHHHHHHHHHHHh---------C----------------CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHH
Confidence 4556777788877653 1 248889999999999999999999877 87
Q ss_pred --EEEEECCCC----C-chh-------hhhc-CceecCCHHHHHhcC--CEEEEeccCchhhhhcccHHHHhcCCC---C
Q psy7383 200 --NVIFYDPYL----P-DGI-------EKSL-GLTRVYTLQDLLFQS--DCVSLHCTLNEHNHHLINEFTIKQMRP---G 259 (501)
Q Consensus 200 --~Vi~~dr~~----~-~~~-------~~~~-gv~~~~sLdelL~~s--DvVil~lPlt~~T~~lI~~~~l~~MK~---g 259 (501)
+++.+|++- . ++. .+.. ......+|.|+++.. |+++-+- ...++|+++.++.|.+ .
T Consensus 59 ~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~er 134 (255)
T PF03949_consen 59 RKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNER 134 (255)
T ss_dssp HTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSS
T ss_pred hccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCC
Confidence 488888651 1 111 1110 011123899999999 9987652 2578999999999998 9
Q ss_pred cEEEEcCCCCccCHHHHHHHHHc--CCceEEEEecCCCCCCCCC--CCCCCCCCCeEEecCCCC-----CcHHHHHHHHH
Q psy7383 260 AFLVNTARGGLVDDDSLAAALKQ--GRIRAAALDVHESEPYNVF--QGNLKDAPNILCTPHAAF-----YSEASCTELRE 330 (501)
Q Consensus 260 AilINvaRG~vVde~aL~~aL~~--g~I~GAaLDVfe~EPl~~~--~~pL~~~pNVilTPHiAg-----~T~ea~~~~~~ 330 (501)
.++.=.|...---|-.-.++.+- |+.. +-.=...+|.... ...--+..|+++-|=++- ....-.++|..
T Consensus 135 PIIF~LSNPt~~aE~~peda~~~t~g~ai--~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~ 212 (255)
T PF03949_consen 135 PIIFPLSNPTPKAECTPEDAYEWTDGRAI--FATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFL 212 (255)
T ss_dssp EEEEE-SSSCGGSSS-HHHHHHTTTSEEE--EEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHH
T ss_pred CEEEECCCCCCcccCCHHHHHhhCCceEE--EecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHH
Confidence 99999998766444444444444 3332 1111112221110 011224567777776542 11122356666
Q ss_pred HHHHHHHHHH
Q psy7383 331 MAASEIRRAI 340 (501)
Q Consensus 331 ~~~~ni~~~l 340 (501)
.+++.|.++.
T Consensus 213 aAA~aLA~~v 222 (255)
T PF03949_consen 213 AAAEALADLV 222 (255)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhC
Confidence 6666665554
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.38 Score=49.11 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=53.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC-----CHHHHH---hcCCEEEEeccCchhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY-----TLQDLL---FQSDCVSLHCTLNEHN 244 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~-----sLdelL---~~sDvVil~lPlt~~T 244 (501)
.|.+|.|.|.|.+|+.+++.++++|.+|++.++.... +..+++|+..+. ++.+.+ ...|+++-++...
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~--- 239 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNA--- 239 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCch---
Confidence 5789999999999999999999999999998876422 233334432210 111111 2356665433111
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaR 267 (501)
. .-...++.++++..+|+++.
T Consensus 240 ~--~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 240 K--AISALVGGLAPRGKLLILGA 260 (333)
T ss_pred H--HHHHHHHHcccCCEEEEEec
Confidence 1 11334566666666666654
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.49 Score=48.98 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=56.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCceecC-----CH-HHH---Hh--cCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGLTRVY-----TL-QDL---LF--QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv~~~~-----sL-del---L~--~sDvVil~lPl 240 (501)
.|++|.|+|.|.+|+.+++.++.+|.+ |++.++...+ +..+++|...+. +. +++ .. ..|+|+-++-.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 478999999999999999999999995 9888876432 334445543211 11 111 11 35777665431
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+++ + .+.+..++++..+|.++-
T Consensus 256 -~~~---~-~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 256 -PET---Y-KQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -HHH---H-HHHHHHhccCCEEEEECC
Confidence 111 2 235666777777777764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.38 Score=48.61 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=58.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-CC----H-HHHHhcCCEEEEeccCchhhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-YT----L-QDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-~s----L-delL~~sDvVil~lPlt~~T~~ 246 (501)
.+.+|.|+|.|.+|+.+++.++.+|++|++.++.... +..+..+...+ .. . .......|+++-++... .
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~--- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSG-A--- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcH-H---
Confidence 4688999999999999999999999999998876432 22233333211 00 1 01123578887665321 1
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaR 267 (501)
...+.++.|+++..+|+++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 22556788888888888864
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.59 Score=44.91 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=31.3
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+.++++.|.| .|.||+.+|+.|...|++|+...++.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~ 39 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGS 39 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCC
Confidence 6789999998 59999999999999999998876543
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.4 Score=47.76 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=56.3
Q ss_pred CEEEEECCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHH
Q psy7383 199 FNVIFYDPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSL 276 (501)
Q Consensus 199 ~~Vi~~dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL 276 (501)
.+|++|+|+..+. ....+++....+..+++.+||+|+++++ ......++ .+.-..++++.+||.+.-| +..+.|
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl-~~l~~~~~~~~~ivS~~ag--i~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL-SELKSEKGKDKLLISIAAG--VTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH-HHHhhhccCCCEEEEecCC--CCHHHH
Confidence 4789999875431 2234577666788899999999999999 33334333 2222345677899999988 888888
Q ss_pred HHHHHc
Q psy7383 277 AAALKQ 282 (501)
Q Consensus 277 ~~aL~~ 282 (501)
.+.+..
T Consensus 86 ~~~~~~ 91 (245)
T TIGR00112 86 SQLLGG 91 (245)
T ss_pred HHHcCC
Confidence 887754
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.47 Score=46.65 Aligned_cols=90 Identities=26% Similarity=0.252 Sum_probs=59.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcC-ceecCCHH-HHH--hcCCEEEEeccCchhhhhc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLG-LTRVYTLQ-DLL--FQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~g-v~~~~sLd-elL--~~sDvVil~lPlt~~T~~l 247 (501)
.|.+|.|.|.|.+|+.+++.++.+|.+ |++.++.... ...+..| ...+.... +.. ...|+|+.++.... .
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----~ 172 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----A 172 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----H
Confidence 578999999999999999999999999 9888865432 2333344 11111111 111 24788876654221 1
Q ss_pred ccHHHHhcCCCCcEEEEcCCC
Q psy7383 248 INEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG 268 (501)
-.+.++.|+++..+++++-.
T Consensus 173 -~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 173 -LETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred -HHHHHHHhcCCcEEEEEecc
Confidence 24567888999999988754
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.4 Score=48.80 Aligned_cols=87 Identities=28% Similarity=0.286 Sum_probs=51.9
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecC-----CHHH--HH--hcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVY-----TLQD--LL--FQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~-----sLde--lL--~~sDvVil~lPlt~~ 243 (501)
.|.+|.|+|. |.+|+.+++.++..|++|++.+.....+..+..|+..+. ...+ +. ...|+|+-++..
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~--- 253 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAAKEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG--- 253 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCchhhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH---
Confidence 4789999998 999999999999999998887654322333334432111 0111 11 235666554431
Q ss_pred hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINva 266 (501)
. .....++.|+++..+|+++
T Consensus 254 -~--~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 254 -P--LFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred -H--HHHHHHHHhccCCEEEEec
Confidence 1 1234556666666666654
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.57 Score=48.69 Aligned_cols=89 Identities=20% Similarity=0.157 Sum_probs=59.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceec-C--C---HHHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRV-Y--T---LQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~-~--s---LdelL~~sDvVil~lPlt~~T~ 245 (501)
.|.+|.|+|.|.+|+.+++.++.+|.+|++.+....+ ...+.+|+..+ . + +.++....|+|+-++....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~--- 256 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFH--- 256 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchH---
Confidence 5789999999999999999999999999888765432 12233554321 1 1 2223334688877664211
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.-...++.++++..+|.++.
T Consensus 257 --~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 257 --PLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred --HHHHHHHHhccCCEEEEECC
Confidence 11345677888888888874
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.81 Score=48.20 Aligned_cols=66 Identities=23% Similarity=0.247 Sum_probs=48.2
Q ss_pred cccCCeEEeecc---chHHHHHHHHHH-hCCCEEEEECCCC---Cchhh---hhcC--ceecCCHHHHHhcCCEEEEe
Q psy7383 172 RIRGDTLGIVGL---GRIGSAVALRAK-AFGFNVIFYDPYL---PDGIE---KSLG--LTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 172 ~L~gktVGIVGl---G~IG~~iA~~L~-afG~~Vi~~dr~~---~~~~~---~~~g--v~~~~sLdelL~~sDvVil~ 237 (501)
.+.|+||++||= +++..+++..|. .+|++|.+..|.. +.... +..| ++...+++|.++++|||..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 378999999998 578888888765 4599999988753 21211 1223 44557899999999999873
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.31 Score=55.54 Aligned_cols=38 Identities=32% Similarity=0.327 Sum_probs=34.5
Q ss_pred ccccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
..+.||++.|.| .|.||+.+|+.|...|++|++.+++.
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~ 456 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDE 456 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCH
Confidence 357899999999 69999999999999999999999875
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.48 Score=53.80 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=32.6
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
-.|++|.|||.|..|...|..|+..|++|++|++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 36899999999999999999999999999999865
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.17 Score=45.53 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=29.2
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
.++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999898 78888865
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.15 Score=49.54 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=43.3
Q ss_pred eEEeeccchHHHHHHHH--HHhCCCEE-EEECCCCCchhhhh---cCceecCCHHHHHh--cCCEEEEeccC
Q psy7383 177 TLGIVGLGRIGSAVALR--AKAFGFNV-IFYDPYLPDGIEKS---LGLTRVYTLQDLLF--QSDCVSLHCTL 240 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~--L~afG~~V-i~~dr~~~~~~~~~---~gv~~~~sLdelL~--~sDvVil~lPl 240 (501)
+|.|||.|+||++++.. .+..||++ .+||-.++. .-.. .-+...++|++.++ +.|+.++|+|.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~-VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDK-VGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHH-hCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 58999999999999975 35788985 568865432 1111 12333445666677 68899999994
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.37 Score=51.66 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=53.1
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~ 245 (501)
+..++-|+|+|.+|+.+++.|+..|.+|.+.|....+ .....+...+ .+ |+++ +++|+.|+++++.+.++.
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~-~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl 317 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLE-HRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNA 317 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhh-hhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHH
Confidence 3567999999999999999999999998888864221 1111222111 12 2221 557888888776544443
Q ss_pred hcccHHHHhcCCCCcEEE
Q psy7383 246 HLINEFTIKQMRPGAFLV 263 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilI 263 (501)
.+ ....+.+.++..+|
T Consensus 318 ~i--vL~ar~l~p~~kII 333 (393)
T PRK10537 318 FV--VLAAKEMSSDVKTV 333 (393)
T ss_pred HH--HHHHHHhCCCCcEE
Confidence 33 33455555554333
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.23 Score=51.41 Aligned_cols=92 Identities=20% Similarity=0.186 Sum_probs=55.9
Q ss_pred eEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhhhh----c------CceecCCHHHHHhcCCEEEEeccCc-
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIEKS----L------GLTRVYTLQDLLFQSDCVSLHCTLN- 241 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~~~----~------gv~~~~sLdelL~~sDvVil~lPlt- 241 (501)
||+|||.|.+|..+|-.|...+. ++..+|..... +.... . .+.....-.+.+++||+|+++.-..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~ 80 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCC
Confidence 58999999999999998876554 79999986432 11110 0 1111112247799999999986531
Q ss_pred -h-hh---hhcc--cH-------HHHhcCCCCcEEEEcCCC
Q psy7383 242 -E-HN---HHLI--NE-------FTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 -~-~T---~~lI--~~-------~~l~~MK~gAilINvaRG 268 (501)
+ +| ..++ |. ..+..-.+++++|.++-.
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP 121 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP 121 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 1 23 1222 22 223334577888877643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.86 Score=50.73 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=46.8
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhCC-CEEEEECCCCC---chh---hhhcC--ceecCCHHHHHhcCCE
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAFG-FNVIFYDPYLP---DGI---EKSLG--LTRVYTLQDLLFQSDC 233 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~afG-~~Vi~~dr~~~---~~~---~~~~g--v~~~~sLdelL~~sDv 233 (501)
+.|++|++||= +++..+++..|..|| ++|.+..|..- ... .++.| +....++++.++++|+
T Consensus 172 l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 172 NSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 78999999998 689999999999998 99999887531 121 11234 4445789999999995
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.52 Score=49.02 Aligned_cols=93 Identities=19% Similarity=0.284 Sum_probs=59.6
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC--EEEEECCCCCchhh----hh-c--Cceec---CCHHHHHhcCCEEEEeccCc-
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF--NVIFYDPYLPDGIE----KS-L--GLTRV---YTLQDLLFQSDCVSLHCTLN- 241 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~--~Vi~~dr~~~~~~~----~~-~--gv~~~---~sLdelL~~sDvVil~lPlt- 241 (501)
++|+|||. |.+|..+|-.|...+. ++..+|.....+.. .. . .+... +++.+.+++||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 47999999 9999999999987774 79999976322211 11 1 12211 12357799999999886541
Q ss_pred -h-hhhh-cc--c-------HHHHhcCCCCcEEEEcCCC
Q psy7383 242 -E-HNHH-LI--N-------EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 -~-~T~~-lI--~-------~~~l~~MK~gAilINvaRG 268 (501)
+ ++|- ++ | .+.+..-.+.+++|+++-.
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 1 2222 11 2 1234445689999999875
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.32 Score=50.77 Aligned_cols=97 Identities=10% Similarity=0.075 Sum_probs=58.7
Q ss_pred eEEeecc-chHHHHHHHHHHhCCC-------EEEEECCCCCch--hhhhcC-----------ceecCCHHHHHhcCCEEE
Q psy7383 177 TLGIVGL-GRIGSAVALRAKAFGF-------NVIFYDPYLPDG--IEKSLG-----------LTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 177 tVGIVGl-G~IG~~iA~~L~afG~-------~Vi~~dr~~~~~--~~~~~g-----------v~~~~sLdelL~~sDvVi 235 (501)
+|+|||. |.+|..+|..|...+. ++..+|...... ....+. +....+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999986544 588999754321 111110 111114467899999999
Q ss_pred EeccCch---hhhh-cc--c-------HHHHhcC-CCCcEEEEcCCCCccCHHH
Q psy7383 236 LHCTLNE---HNHH-LI--N-------EFTIKQM-RPGAFLVNTARGGLVDDDS 275 (501)
Q Consensus 236 l~lPlt~---~T~~-lI--~-------~~~l~~M-K~gAilINvaRG~vVde~a 275 (501)
++.-... +|+. ++ | ...+... ++.+++|.++ ..+|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 8765321 1221 11 1 1233444 5788999887 4465554
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.45 Score=49.70 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=51.3
Q ss_pred CCeEEeec-cchHHHHHHHHHHhCCC---EEEEECCCCCchhhhhc-Cce-ecCCHH-HHHhcCCEEEEeccCchhhhhc
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAFGF---NVIFYDPYLPDGIEKSL-GLT-RVYTLQ-DLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~afG~---~Vi~~dr~~~~~~~~~~-gv~-~~~sLd-elL~~sDvVil~lPlt~~T~~l 247 (501)
+++|+|+| .|.+|+.+++.|...++ ++.+..+....+....+ +.. .+.+++ +.+.++|+|++++|.. .++.+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence 36899997 69999999999998665 34555433222111111 111 111222 3357899999998843 22322
Q ss_pred ccHHHHhcCCCCcEEEEcCC
Q psy7383 248 INEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaR 267 (501)
. .. .++.|+++|+.+.
T Consensus 80 ~-~~---~~~~G~~VIDlS~ 95 (334)
T PRK14874 80 A-PK---AAAAGAVVIDNSS 95 (334)
T ss_pred H-HH---HHhCCCEEEECCc
Confidence 2 11 2356889998874
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.56 Score=48.71 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=55.1
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hhhh-hcCceecC------CHHHHHh-----cCCEEEEecc
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEK-SLGLTRVY------TLQDLLF-----QSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~-~~gv~~~~------sLdelL~-----~sDvVil~lP 239 (501)
.|.+|.|.|. |.+|+.+++.++.+|++|++.+++..+ +..+ .+|+..+. ++.+.+. ..|+|+-++-
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG 237 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG 237 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence 5889999999 999999999999999999988765432 2222 35543211 2322222 2566665543
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
. . . -...++.++++..+|.++
T Consensus 238 -~---~-~-~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 238 -G---D-M-LDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -H---H-H-HHHHHHHhccCCEEEEEC
Confidence 1 1 1 145566777777777665
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.2 Score=59.65 Aligned_cols=92 Identities=9% Similarity=0.017 Sum_probs=63.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh--------------------------hhhcC----c----
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI--------------------------EKSLG----L---- 218 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~--------------------------~~~~g----v---- 218 (501)
+.-.+|.|+|.|+.|+..++.+..+|++ . .++..-..+ .+..+ +
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~ 278 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD 278 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence 3457899999999999999999998776 2 221100000 00000 0
Q ss_pred ------eecCC-HHHHHhcCCEEEEeccCchhhhhcccHH-HHhcCCCCc----EEEEcC
Q psy7383 219 ------TRVYT-LQDLLFQSDCVSLHCTLNEHNHHLINEF-TIKQMRPGA----FLVNTA 266 (501)
Q Consensus 219 ------~~~~s-LdelL~~sDvVil~lPlt~~T~~lI~~~-~l~~MK~gA----ilINva 266 (501)
.+... +++++..+|+||.++-..+.+-.+|.++ ..+.||+|. +|+|++
T Consensus 279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 00011 3568899999999998788888999888 777899998 888876
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.5 Score=49.78 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=50.8
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCC---EEEEEC--CCCCchhhhhcCce-ecCCH-HHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGF---NVIFYD--PYLPDGIEKSLGLT-RVYTL-QDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~---~Vi~~d--r~~~~~~~~~~gv~-~~~sL-delL~~sDvVil~lPlt~~T~ 245 (501)
...+|+||| .|.+|+.+.++|...++ ++.++. ++...... ..+.. .+.++ .+.+.++|+|++++|.. .+.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~-~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~ 83 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVT-FEGRDYTVEELTEDSFDGVDIALFSAGGS-ISK 83 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeee-ecCceeEEEeCCHHHHcCCCEEEECCCcH-HHH
Confidence 456899997 59999999999988554 333332 22111111 11111 11122 24458999999999854 223
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINva 266 (501)
.+.. + ..+.|+.+||.+
T Consensus 84 ~~~~-~---~~~~g~~VIDlS 100 (344)
T PLN02383 84 KFGP-I---AVDKGAVVVDNS 100 (344)
T ss_pred HHHH-H---HHhCCCEEEECC
Confidence 3321 1 125689999998
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.66 Score=48.18 Aligned_cols=45 Identities=36% Similarity=0.478 Sum_probs=35.8
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv 218 (501)
.|.+|.|+|.|.+|..+++.++.+|+ +|++.++.... +..+++|+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga 233 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV 233 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 58899999999999999999999999 79999876432 23344443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.62 Score=48.63 Aligned_cols=45 Identities=33% Similarity=0.464 Sum_probs=35.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv 218 (501)
.|.+|.|+|.|.||..+++.++.+|. +|++.++...+ +..+++|+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga 231 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGA 231 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence 47899999999999999999999999 79998876432 33344443
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.38 Score=49.85 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=33.0
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+++|+|.|.| .|-||+.+++.|...|.+|+++|+..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 36789999998 59999999999999999999999753
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.53 Score=47.38 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=55.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHH--hcCCEEEEeccCchhhhhcccH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLL--FQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL--~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.|.+|.|.|.|.+|+.+++.++.+|.+|++.+.+... +..+++|+....+.++.. ...|+++-++... . . -.
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~---~-~-~~ 229 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSP---S-G-LE 229 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCCh---H-H-HH
Confidence 5789999999999999999999999999988765422 233345554332222211 2367776654211 1 1 13
Q ss_pred HHHhcCCCCcEEEEcC
Q psy7383 251 FTIKQMRPGAFLVNTA 266 (501)
Q Consensus 251 ~~l~~MK~gAilINva 266 (501)
..++.++++..+|..+
T Consensus 230 ~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 230 LALRLVRPRGTVVLKS 245 (319)
T ss_pred HHHHHhhcCCEEEEEc
Confidence 4456677777776543
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.73 Score=47.02 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=58.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC------CHHH----HHh-cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY------TLQD----LLF-QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~------sLde----lL~-~sDvVil~lPlt 241 (501)
.+++|.|.|.|.+|+.+++.++.+|++|++.+++... +..+.+|+..+. ++.+ +.. ..|+++-++..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~- 243 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGI- 243 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCC-
Confidence 5789999999999999999999999999988765432 223334442221 1111 111 46777765431
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.+ .-...++.|+++..+|+++..
T Consensus 244 ~~----~~~~~~~~l~~~g~~i~~g~~ 266 (345)
T cd08260 244 PE----TCRNSVASLRKRGRHVQVGLT 266 (345)
T ss_pred HH----HHHHHHHHhhcCCEEEEeCCc
Confidence 11 123467778888888887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.53 E-value=4.5 Score=45.39 Aligned_cols=217 Identities=14% Similarity=0.118 Sum_probs=134.0
Q ss_pred cCCCCcEEEEcCccccc-cchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhc
Q psy7383 89 KFKTLRIIVRIGSGVDN-IDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAA 167 (501)
Q Consensus 89 ~~p~LK~I~~~gaG~D~-ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~ 167 (501)
.+|+. +|+.-=-+..+ +.+..--+..|.+.|+. . .-+|--+++-+|+.+|-. |
T Consensus 237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDD-i--QGTaaV~LAgll~A~r~~---------g------------- 290 (563)
T PRK13529 237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDD-I--QGTGAVTLAGLLAALKIT---------G------------- 290 (563)
T ss_pred hCCCe-EEehhhcCCchHHHHHHHhccCCCeeccc-c--chHHHHHHHHHHHHHHHh---------C-------------
Confidence 34665 66666555533 34433345578898873 2 346777888888887743 1
Q ss_pred cccccccCCeEEeeccchHHHHHHHHHHh----CCC-------EEEEECCCC----Cc-hh-------hhhc-Cc-----
Q psy7383 168 SGCARIRGDTLGIVGLGRIGSAVALRAKA----FGF-------NVIFYDPYL----PD-GI-------EKSL-GL----- 218 (501)
Q Consensus 168 ~g~~~L~gktVGIVGlG~IG~~iA~~L~a----fG~-------~Vi~~dr~~----~~-~~-------~~~~-gv----- 218 (501)
..|.+.+|.|+|.|..|-.+|+.+.. .|. +++.+|+.- .. +. ++.. ..
T Consensus 291 ---~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~ 367 (563)
T PRK13529 291 ---EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDT 367 (563)
T ss_pred ---CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccccc
Confidence 24788999999999999999999976 587 788888652 10 11 1100 00
Q ss_pred -eecCCHHHHHhcC--CEEEEeccCchhhhhcccHHHHhcCCC---CcEEEEcCCCCccCHHHHHHHHH--cCC-ceEEE
Q psy7383 219 -TRVYTLQDLLFQS--DCVSLHCTLNEHNHHLINEFTIKQMRP---GAFLVNTARGGLVDDDSLAAALK--QGR-IRAAA 289 (501)
Q Consensus 219 -~~~~sLdelL~~s--DvVil~lPlt~~T~~lI~~~~l~~MK~---gAilINvaRG~vVde~aL~~aL~--~g~-I~GAa 289 (501)
....+|.|+++.. |++|=+- ..-++|+++.++.|.+ ..++.=.|+....-|-.-.++.+ +|+ |.+.+
T Consensus 368 ~~~~~~L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtG 443 (563)
T PRK13529 368 EGDVISLLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATG 443 (563)
T ss_pred ccCCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEEC
Confidence 0113789999988 9887542 2358999999999987 99999999876644433334443 454 43322
Q ss_pred EecCCCCCCCCCC--CCCCCCCCeEEecCCCCCc-----HHHHHHHHHHHHHHHHHHHh
Q psy7383 290 LDVHESEPYNVFQ--GNLKDAPNILCTPHAAFYS-----EASCTELREMAASEIRRAIV 341 (501)
Q Consensus 290 LDVfe~EPl~~~~--~pL~~~pNVilTPHiAg~T-----~ea~~~~~~~~~~ni~~~l~ 341 (501)
. ..+|..... ..--+.-|+++-|=++--. ..-.++|...+++.|.++..
T Consensus 444 s---pf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~ 499 (563)
T PRK13529 444 S---PFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVP 499 (563)
T ss_pred C---CCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCc
Confidence 2 112211100 0112456899999876321 22235677777777766554
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.32 Score=51.13 Aligned_cols=65 Identities=22% Similarity=0.090 Sum_probs=43.7
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhh-hcCce-------ecCCHHHHHhcCCEEEEec
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-SLGLT-------RVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-~~gv~-------~~~sLdelL~~sDvVil~l 238 (501)
.+|+|.|.|- |.||+.+++.|...|++|++.++........ ....+ ....+..++.++|+|+-+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 5689999986 9999999999999999999999753211110 00111 1112344567889887654
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.2 Score=45.96 Aligned_cols=106 Identities=18% Similarity=0.153 Sum_probs=69.8
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCCCE-EEEECCCCCchhhhhcCceecCCHHHHHhc--CCEEEEeccCchhhhhcccH
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFGFN-VIFYDPYLPDGIEKSLGLTRVYTLQDLLFQ--SDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG~~-Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~--sDvVil~lPlt~~T~~lI~~ 250 (501)
..+|.|.|. |.+|+.+.+.|..+|++ |...+|.. ....-.|+..+.+++|+-.. -|+.++++|.. .+...+ +
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~--~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l-~ 83 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGK--GGTTVLGLPVFNTVAEAVEATGANASVIYVPPP-FAADAI-L 83 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCC--CCCeEeCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHH-H
Confidence 457889998 88999999999999886 33456651 01223567767789998887 89999999943 333333 2
Q ss_pred HHHhcCC-CCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 251 FTIKQMR-PGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK-~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+..+ .. +.++++.-+- .+-+++.|.+..++..+.
T Consensus 84 e~~~-~gvk~avI~s~Gf-~~~~~~~l~~~a~~~gir 118 (291)
T PRK05678 84 EAID-AGIDLIVCITEGI-PVLDMLEVKAYLERKKTR 118 (291)
T ss_pred HHHH-CCCCEEEEECCCC-CHHHHHHHHHHHHHcCCE
Confidence 3333 33 3344444333 344455899999888766
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.84 Score=46.85 Aligned_cols=89 Identities=28% Similarity=0.313 Sum_probs=58.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-----CH----HHHHh--cCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-----TL----QDLLF--QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-----sL----delL~--~sDvVil~lPl 240 (501)
.|++|.|.|.|.+|+.+++.++.+|+ +|++.+++... ...+.+|+..+. ++ .++.. ..|+|+-+...
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~ 251 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV 251 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence 57899999999999999999999999 78888765432 222334432211 12 12222 37888776542
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. . . -.+.++.|+++..+|.++.
T Consensus 252 ~-~---~-~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 252 Q-A---T-LDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred H-H---H-HHHHHHhccCCCEEEEEcc
Confidence 1 1 1 1456677888888888764
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.38 Score=51.88 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=67.6
Q ss_pred EEeeccchHHHH-HHHHHHhCCCEEEEECCCCCch--hhhhcCceecC-CHHHHHhcCCEEEEec--cC-chhhh-----
Q psy7383 178 LGIVGLGRIGSA-VALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVY-TLQDLLFQSDCVSLHC--TL-NEHNH----- 245 (501)
Q Consensus 178 VGIVGlG~IG~~-iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~-sLdelL~~sDvVil~l--Pl-t~~T~----- 245 (501)
+-|||.|.+|.+ +|+.|+..|++|.++|...... ..++.|+.... .-.+.+.++|+|+..- |. .++.+
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 679999999998 9999999999999999765321 12234554322 1234567899988752 21 22211
Q ss_pred --hcccH-HHH-hcCC-CCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 246 --HLINE-FTI-KQMR-PGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 246 --~lI~~-~~l-~~MK-~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
.++.+ +++ +.++ ...+-|--+.|+--...-|...|+...
T Consensus 82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 13332 233 3333 345666667898888887778887644
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.6 Score=45.64 Aligned_cols=100 Identities=11% Similarity=0.116 Sum_probs=59.6
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC-------EEEEECCCCCc----hhh----hh-----cCceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF-------NVIFYDPYLPD----GIE----KS-----LGLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~-------~Vi~~dr~~~~----~~~----~~-----~gv~~~~sLdelL~~sDvV 234 (501)
++|+|||. |.+|..+|-.|...+. ++..+|..... +.. .. ..+.......+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998865443 78999974321 111 00 0112223455789999999
Q ss_pred EEeccCc--h-hhhhc-c--cH----H---HHhc-CCCCcEEEEcCCCCccCHHHHH
Q psy7383 235 SLHCTLN--E-HNHHL-I--NE----F---TIKQ-MRPGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 235 il~lPlt--~-~T~~l-I--~~----~---~l~~-MK~gAilINvaRG~vVde~aL~ 277 (501)
+++.-.. + +|+-- + |. + .+.. .++.+++|.++ ..+|.-..+
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v 139 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALI 139 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHH
Confidence 9976531 1 22221 1 11 1 2223 34689999998 446555433
|
|
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.74 Score=45.73 Aligned_cols=89 Identities=24% Similarity=0.212 Sum_probs=54.8
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCceec-----CCHH----HHH--hcCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGLTRV-----YTLQ----DLL--FQSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv~~~-----~sLd----elL--~~sDvVil~lPl 240 (501)
.|.+|.|.|.|.+|+.+++.++..|++ |++.++.... ...+.+|+..+ .++. ++. ...|+++-+...
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~ 208 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGH 208 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 578899999999999999999999999 8887765322 22233343211 1121 122 235776655321
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. ......++.|+++..+++++.
T Consensus 209 ~-----~~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 209 Q-----WPLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred H-----HHHHHHHHHhccCCEEEEEcc
Confidence 1 122345667777777777764
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.63 Score=46.73 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=31.4
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.+|.|+|. |.+|+.+++.++..|++|++.++..
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKA 181 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCH
Confidence 3679999998 9999999999999999999887664
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >KOG0022|consensus | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.27 Score=51.34 Aligned_cols=50 Identities=36% Similarity=0.454 Sum_probs=41.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVYT 223 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~s 223 (501)
.|.|++|.|+|.+|.++++-++++|+ ++++.|-+.++ +..+++|+..+-+
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iN 243 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFIN 243 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecC
Confidence 58999999999999999999999997 79999988654 5666777764433
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.8 Score=46.63 Aligned_cols=86 Identities=19% Similarity=0.153 Sum_probs=55.4
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhh-cCceec-----CCHHHHH-----hcCCEEEEeccC
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKS-LGLTRV-----YTLQDLL-----FQSDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~-~gv~~~-----~sLdelL-----~~sDvVil~lPl 240 (501)
|.+|.|.|. |.+|+.+++.++.+|+ +|++.+++..+ +..+. +|+..+ .++.+.+ ...|+|+-++..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 489999998 9999999999999999 89998765432 22222 454321 1222222 136777665541
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINva 266 (501)
.. + .+.++.++++..+|.++
T Consensus 235 ----~~-~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 235 ----EI-S-DTVISQMNENSHIILCG 254 (345)
T ss_pred ----HH-H-HHHHHHhccCCEEEEEe
Confidence 11 2 45677778888887765
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.20 E-value=1.3 Score=47.75 Aligned_cols=107 Identities=23% Similarity=0.234 Sum_probs=67.5
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh------hhhcCceec--CCHH-----HHHhcCCEEEEeccCchh
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI------EKSLGLTRV--YTLQ-----DLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~------~~~~gv~~~--~sLd-----elL~~sDvVil~lPlt~~ 243 (501)
+|.|||+|..|.++|+.|...|++|.++|....... ....|+... ...+ +.+.+.|+|+..-...++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 689999999999999999999999999997643211 223455432 1122 467889998874333222
Q ss_pred hh----------hcccHH-H-HhcCCC-CcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 244 NH----------HLINEF-T-IKQMRP-GAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 244 T~----------~lI~~~-~-l~~MK~-gAilINvaRG~vVde~aL~~aL~~g 283 (501)
.. .++.+- . ...+++ ..+-|--+.|+.-...-|...|+..
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~ 134 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAA 134 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 11 123322 2 233433 3555666778877777777777653
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.72 Score=47.16 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=54.9
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hhhhh-cCceec------CCHHHHH-----hcCCEEEEecc
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKS-LGLTRV------YTLQDLL-----FQSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~-~gv~~~------~sLdelL-----~~sDvVil~lP 239 (501)
.|.+|.|.|. |.+|+.+++.++.+|++|++.+++... +..++ +|+..+ .++.+.+ ...|+|+-++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g 230 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG 230 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence 5789999998 999999999999999999988765432 22223 444211 0222222 13566665443
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. .. -.+.++.++++..+|.++.
T Consensus 231 ~----~~--~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 231 G----KM--LDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred H----HH--HHHHHHHhccCcEEEEecc
Confidence 1 11 1355667777777776653
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.65 Score=48.45 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=50.2
Q ss_pred CeEEeec-cchHHHHHHHHHHhCC-CEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFG-FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG-~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
.+|+||| .|-.|+++.++|...- +++.....+.... . .+.++++.++|+|++++|... ...+. .+.
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~------~---~~~~~~~~~~DvvFlalp~~~-s~~~~-~~~- 70 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD------A---AARRELLNAADVAILCLPDDA-AREAV-ALI- 70 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc------c---cCchhhhcCCCEEEECCCHHH-HHHHH-HHH-
Confidence 4799999 8999999999998765 3554443221111 1 234566788999999998442 22221 111
Q ss_pred hcCCCCcEEEEcC
Q psy7383 254 KQMRPGAFLVNTA 266 (501)
Q Consensus 254 ~~MK~gAilINva 266 (501)
.+.|..+||.|
T Consensus 71 --~~~g~~VIDlS 81 (313)
T PRK11863 71 --DNPATRVIDAS 81 (313)
T ss_pred --HhCCCEEEECC
Confidence 25689999998
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.39 Score=50.38 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=49.5
Q ss_pred eEEeec-cchHHHHHHHHHHhCCCEE---EEECCCCCchhh-hhcCce-ecCCH-HHHHhcCCEEEEeccCchhhhhccc
Q psy7383 177 TLGIVG-LGRIGSAVALRAKAFGFNV---IFYDPYLPDGIE-KSLGLT-RVYTL-QDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 177 tVGIVG-lG~IG~~iA~~L~afG~~V---i~~dr~~~~~~~-~~~gv~-~~~sL-delL~~sDvVil~lPlt~~T~~lI~ 249 (501)
+|+||| .|.+|+.+++.|...++.+ .++.+....+.. ...+.. .+.++ .+.+.++|+|++++|.. .++.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 589999 8999999999998866653 333333221111 111211 11122 23458999999999844 222221
Q ss_pred HHHHhcCCCCcEEEEcC
Q psy7383 250 EFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 250 ~~~l~~MK~gAilINva 266 (501)
.++ ++.|+++|+.+
T Consensus 79 ~~~---~~~G~~VID~s 92 (339)
T TIGR01296 79 PKA---AKCGAIVIDNT 92 (339)
T ss_pred HHH---HHCCCEEEECC
Confidence 122 35688899887
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.46 Score=49.63 Aligned_cols=98 Identities=11% Similarity=0.177 Sum_probs=59.9
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC-------EEEEECCCCC----chhhhh----c-----CceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF-------NVIFYDPYLP----DGIEKS----L-----GLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~-------~Vi~~dr~~~----~~~~~~----~-----gv~~~~sLdelL~~sDvV 234 (501)
.+|+|||. |.+|+.+|-.|...+. ++..+|.... .+.... . +.....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 37999998 9999999999987664 8999998532 111110 0 111113456789999999
Q ss_pred EEeccCc--h-hhhhc-c--cH-------HHHhcCCC-CcEEEEcCCCCccCHHH
Q psy7383 235 SLHCTLN--E-HNHHL-I--NE-------FTIKQMRP-GAFLVNTARGGLVDDDS 275 (501)
Q Consensus 235 il~lPlt--~-~T~~l-I--~~-------~~l~~MK~-gAilINvaRG~vVde~a 275 (501)
+++.-.. + +|+.- + |. ..+....+ .+++|.++ ..+|.-.
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 9986531 1 22221 1 11 12333344 88999987 4455443
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.76 Score=47.77 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=32.0
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~ 208 (501)
..|.+|.|+|.|.+|..+++.++.+|. +|++.++..
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~ 219 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINE 219 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 357899999999999999999999999 699888754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.83 Score=43.77 Aligned_cols=34 Identities=21% Similarity=0.093 Sum_probs=29.9
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+++.|.| .|.||+.+|+.|...|++|++++++..
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~ 36 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQ 36 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 4677777 899999999999999999999998754
|
|
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.88 Score=46.16 Aligned_cols=91 Identities=22% Similarity=0.273 Sum_probs=57.6
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCc-hhhhhcCceecCC--------HHHHHh--cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPD-GIEKSLGLTRVYT--------LQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~-~~~~~~gv~~~~s--------LdelL~--~sDvVil~lPlt 241 (501)
.|++|.|+|.|.+|+.+++.++..| .+|++.+++... ...+++|++.+.+ +.++.. ..|+|+-+....
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~ 246 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSD 246 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCH
Confidence 4789999999999999999999999 899988765432 2223444322211 122232 367776654421
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
-...+.++.++++..+|.++...
T Consensus 247 -----~~~~~~~~~l~~~g~~i~~g~~~ 269 (340)
T cd05284 247 -----ETLALAAKLLAKGGRYVIVGYGG 269 (340)
T ss_pred -----HHHHHHHHHhhcCCEEEEEcCCC
Confidence 11245567777777777776543
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.58 Score=53.05 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=32.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+++|.|||-|..|...|..|+..|++|++|++..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 69999999999999999999999999999998654
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.5 Score=48.48 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=31.0
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~ 208 (501)
.|++|.|+|.|.+|..+++.++.+|.+ |++.+++.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~ 195 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS 195 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 578999999999999999999999997 67787654
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.47 Score=48.96 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=32.6
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
++||+|.|.| .|-||+.+++.|...|++|+++++...
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4678999998 599999999999999999999987653
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.1 Score=46.18 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=33.5
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~ 208 (501)
..|...+|.|+|+|.+|.++|+.|...|. +|..+|...
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 45899999999999999999999999998 488888653
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.5 Score=43.16 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=33.0
Q ss_pred cccCCeEEeeccc---hHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGLG---RIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGlG---~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.||++.|.|-+ .||+++|+.|...|++|++.+++.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 4789999999975 799999999999999999888763
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.78 E-value=1 Score=53.36 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=90.2
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCC--chhh----------------------hhc----Cceec
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLP--DGIE----------------------KSL----GLTRV 221 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~--~~~~----------------------~~~----gv~~~ 221 (501)
..|+.++|+|||+|.+|..+|+.|...|. ++...|...- ..+. ++. .++..
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~ 407 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF 407 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence 46999999999999999999999999887 4666553210 0000 000 11111
Q ss_pred ------CCHHHHHhcCCEEEEeccC-chhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 222 ------YTLQDLLFQSDCVSLHCTL-NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 222 ------~sLdelL~~sDvVil~lPl-t~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
.+++++++++|+|+-++-. .-+++..++.... +.+.-+|..+-.+..-.- .-....+. ..-|+|.
T Consensus 408 ~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~---~~~IP~I~ag~~G~~g~v--~v~~p~~~---~~~~~f~ 479 (989)
T PRK14852 408 PEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRAL---ELGIPVITAGPLGYSCAL--LVFMPGGM---NFDSYFG 479 (989)
T ss_pred ecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHH---HcCCCEEEeeccccCeeE--EEEcCCCC---CHHHhCC
Confidence 2467788999999987643 1234444443332 334455554431100000 00000000 0111222
Q ss_pred CCCCCCC----------------CCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy7383 295 SEPYNVF----------------QGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRI 344 (501)
Q Consensus 295 ~EPl~~~----------------~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~ 344 (501)
.||..+. --..++..+|=+.=+.+-.+.-+..-...+++..+++++-|+.
T Consensus 480 ~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~ 545 (989)
T PRK14852 480 IDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRR 545 (989)
T ss_pred CCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCC
Confidence 2221110 1122345556555566777777888888899999999998873
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.73 Score=46.76 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=44.4
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc--hhh---hhc-----------CceecCCHHHHHhcCCEEEE
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD--GIE---KSL-----------GLTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~---~~~-----------gv~~~~sLdelL~~sDvVil 236 (501)
.+|+|.|.| .|.||+.+++.|...|++|++.++.... ... ... .+....++++++++.|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 378999998 5999999999999999999887655421 110 000 11111235567788998877
Q ss_pred ecc
Q psy7383 237 HCT 239 (501)
Q Consensus 237 ~lP 239 (501)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 654
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.53 Score=46.33 Aligned_cols=38 Identities=34% Similarity=0.380 Sum_probs=33.5
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+++||++.|.| .|.||+.+|+.|...|++|++.+++..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 47899999998 569999999999999999999987643
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.61 Score=49.07 Aligned_cols=86 Identities=13% Similarity=0.179 Sum_probs=52.8
Q ss_pred cCCeEEeecc-chHHHHHHHHHHh--C-CCEEEEECCCCCchhhhhc---CceecCCHHHH-HhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKA--F-GFNVIFYDPYLPDGIEKSL---GLTRVYTLQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~a--f-G~~Vi~~dr~~~~~~~~~~---gv~~~~sLdel-L~~sDvVil~lPlt~~T~ 245 (501)
++.+|+|||. |.+|+.+.+.|.. + ..++..+......+..-.+ .+. +.+++++ +.++|++++++|..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~-v~~~~~~~~~~~Dvvf~a~p~~---- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVT-VQDAAEFDWSQAQLAFFVAGRE---- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceE-EEeCchhhccCCCEEEECCCHH----
Confidence 4568999997 9999999999987 4 3455555332221111111 111 2245554 37899999999843
Q ss_pred hcccHHHHhcC-CCCcEEEEcC
Q psy7383 246 HLINEFTIKQM-RPGAFLVNTA 266 (501)
Q Consensus 246 ~lI~~~~l~~M-K~gAilINva 266 (501)
+..+....+ +.|..+||.+
T Consensus 78 --~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 78 --ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred --HHHHHHHHHHHCCCEEEECC
Confidence 222222322 5689999998
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.61 Score=48.05 Aligned_cols=89 Identities=21% Similarity=0.208 Sum_probs=54.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-----CH-------HHHH--hcCCEEEEe
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-----TL-------QDLL--FQSDCVSLH 237 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-----sL-------delL--~~sDvVil~ 237 (501)
.|++|.|.|.|.+|+.+++.++.+|+ +|++.++.... ...+.+|+..+. +. .++. ...|+|+-+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 256 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA 256 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence 57899999999999999999999999 89988765432 222334442211 11 1111 135666655
Q ss_pred ccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 238 lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+... .. ..+.++.|+++..+|.++.
T Consensus 257 ~g~~----~~-~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 257 SGHP----AA-VPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CCCh----HH-HHHHHHHhccCCEEEEEcC
Confidence 4211 11 1345666777777776653
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.54 Score=45.83 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=33.3
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.||++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999985 9999999999999999999998764
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.44 Score=50.62 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=33.6
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
....+++|.|+|- |.||+.+++.|...|++|++++|..
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 3467889999985 9999999999999999999998865
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.84 Score=50.84 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=32.6
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
-.|++|.|||.|.+|...|..|+.+|++|+++|+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46999999999999999999999999999999954
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.4 Score=47.07 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=32.7
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
...+++|.|+| .|.||+.+++.|...|++|+++.|..
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence 36789999999 59999999999999999999887764
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.45 Score=49.16 Aligned_cols=38 Identities=21% Similarity=0.085 Sum_probs=33.7
Q ss_pred ccccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
++-.+++|.|.| .|-||+.+++.|...|++|++.++..
T Consensus 6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~ 44 (353)
T PLN02896 6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP 44 (353)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 467889999998 69999999999999999999987654
|
|
| >cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.84 Score=45.98 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=56.1
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecC---C----HHHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVY---T----LQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~---s----LdelL~~sDvVil~lPlt~~T~ 245 (501)
.|.+|.|+|. |.+|+.+++.+++.|.+|++.++. +..+.+|+..+. + +.++....|+|+-+.- . .
T Consensus 162 ~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~~---~~~~~~g~~~~~~~~~~~~~l~~~~~~~d~vl~~~g---~-~ 234 (325)
T cd08264 162 PGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRK---DWLKEFGADEVVDYDEVEEKVKEITKMADVVINSLG---S-S 234 (325)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeHH---HHHHHhCCCeeecchHHHHHHHHHhCCCCEEEECCC---H-H
Confidence 5789999998 999999999999999999988742 223344442211 1 1222244677765432 1 1
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.-.+.++.|+++..+|+++.
T Consensus 235 --~~~~~~~~l~~~g~~v~~g~ 254 (325)
T cd08264 235 --FWDLSLSVLGRGGRLVTFGT 254 (325)
T ss_pred --HHHHHHHhhccCCEEEEEec
Confidence 22466788888888887753
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo |
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.3 Score=51.71 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=69.9
Q ss_pred CeEEeeccchHHHHH-HHHHHhCCCEEEEECCCCCch--hhhhcCceecC-CHHHHHhcCCEEEEeccCchhhh------
Q psy7383 176 DTLGIVGLGRIGSAV-ALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVY-TLQDLLFQSDCVSLHCTLNEHNH------ 245 (501)
Q Consensus 176 ktVGIVGlG~IG~~i-A~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~-sLdelL~~sDvVil~lPlt~~T~------ 245 (501)
++|.|||+|.+|.+. |+.|+..|++|.++|...... ..+..|+.... ...+.+.++|+|+..=--.+++.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 368999999999998 999999999999999764321 12334654321 23356778999887532222111
Q ss_pred ----hcccHH-HHhc-CCC-CcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 246 ----HLINEF-TIKQ-MRP-GAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 246 ----~lI~~~-~l~~-MK~-gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
.++.+- ++.. ++. ..+-|--+.|+.-...-+...|++..
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 223332 3223 342 35666667898888887788887643
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.48 Score=46.95 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=41.4
Q ss_pred eEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcC--CEEEEecc
Q psy7383 177 TLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQS--DCVSLHCT 239 (501)
Q Consensus 177 tVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~s--DvVil~lP 239 (501)
+|.|+| .|.||+.+++.|...|.+|++++|... .+....++++++..+ |+|+.+..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~-------d~~~~~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL-------DLTDPEALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc-------CCCCHHHHHHHHHhCCCCEEEECCc
Confidence 467888 599999999999999999999987521 112223466667765 99887664
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.98 Score=47.51 Aligned_cols=45 Identities=33% Similarity=0.450 Sum_probs=34.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~gv 218 (501)
.|.+|.|+|.|.||..+++.++.+|++ |++.++.... +..+++|+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa 239 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV 239 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence 588999999999999999999999984 8888765422 33344554
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.5 Score=38.45 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=30.0
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+|.|||-|.+|-.+|..|+.+|.+|.++++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 588999999999999999999999999987643
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.77 Score=48.57 Aligned_cols=85 Identities=15% Similarity=0.290 Sum_probs=51.1
Q ss_pred cCCeEEeecc-chHHHHHHHHHHh-CCCE---EEEECCCCCchhhhhc-----CceecCCHHHHHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKA-FGFN---VIFYDPYLPDGIEKSL-----GLTRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~a-fG~~---Vi~~dr~~~~~~~~~~-----gv~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
++.+|||||. |..|+.+.+.|.. -.++ +..+......+..-.+ -++.. +.++ +.++|++++++|.. .
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~-~~~~-~~~~Divf~a~~~~-~ 80 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEA-KINS-FEGVDIAFFSAGGE-V 80 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeC-CHHH-hcCCCEEEECCChH-H
Confidence 3468999997 9999999999984 5555 4434322211111111 11222 3334 48899999999843 2
Q ss_pred hhhcccHHHHhc-CCCCcEEEEcC
Q psy7383 244 NHHLINEFTIKQ-MRPGAFLVNTA 266 (501)
Q Consensus 244 T~~lI~~~~l~~-MK~gAilINva 266 (501)
++.+ ... .+.|+.+||.+
T Consensus 81 s~~~-----~~~~~~~G~~VID~S 99 (347)
T PRK06728 81 SRQF-----VNQAVSSGAIVIDNT 99 (347)
T ss_pred HHHH-----HHHHHHCCCEEEECc
Confidence 2222 222 35689999988
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=1.1 Score=48.06 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=33.3
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.|+++.|.|. |.||+.+|+.|...|++|++.++..
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~ 244 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA 244 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 468999999987 9999999999999999999998753
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.5 Score=49.55 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=32.7
Q ss_pred ccccCCeEEeec-cchHHHHHHHHHHhC-CCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVG-LGRIGSAVALRAKAF-GFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVG-lG~IG~~iA~~L~af-G~~Vi~~dr~~ 208 (501)
..++.++|.|.| .|-||+.+++.|... |.+|+++|+..
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~ 49 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN 49 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence 357778999998 599999999999987 59999999754
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.75 Score=47.29 Aligned_cols=33 Identities=24% Similarity=0.064 Sum_probs=29.1
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|+|.|.| .|-||+.+++.|...|++|+++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~ 34 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRS 34 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCC
Confidence 5777887 59999999999999999999998764
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.78 Score=43.95 Aligned_cols=36 Identities=31% Similarity=0.110 Sum_probs=32.3
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+.+|++-|.| .|.||+.+++.|...|++|++.++..
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~ 39 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQD 39 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 7789999997 58899999999999999999998764
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.47 Score=46.30 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=33.9
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+++||++.|.|. |.||+.+++.|...|++|++.+|...
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 588999999985 89999999999999999999988643
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.44 Score=51.36 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=33.4
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.++||++.|.|- |.||+++|+.|...|++|++.+++.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~ 212 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS 212 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999986 8999999999999999999998764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 501 | ||||
| 1hl3_A | 358 | CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK | 1e-160 | ||
| 3ga0_A | 358 | Ctbp1BARS GLY172->glu Mutant Structure: Impairing N | 1e-159 | ||
| 1hku_A | 358 | CtbpBARS: A DUAL-Function Protein Involved In Trans | 1e-158 | ||
| 2ome_A | 336 | Crystal Structure Of Human Ctbp2 Dehydrogenase Comp | 1e-155 | ||
| 1mx3_A | 347 | Crystal Structure Of Ctbp Dehydrogenase Core Holo F | 1e-153 | ||
| 1wwk_A | 307 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 1e-32 | ||
| 3kb6_A | 334 | Crystal Structure Of D-lactate Dehydrogenase From A | 3e-32 | ||
| 2d0i_A | 333 | Crystal Structure Ph0520 Protein From Pyrococcus Ho | 3e-32 | ||
| 2w2k_B | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 5e-32 | ||
| 2w2k_A | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 8e-32 | ||
| 2w2l_D | 348 | Crystal Structure Of The Holo Forms Of Rhodotorula | 1e-31 | ||
| 1ygy_A | 529 | Crystal Structure Of D-3-Phosphoglycerate Dehydroge | 1e-31 | ||
| 3ddn_A | 528 | Crystal Structure Of Hydroxypyruvic Acid Phosphate | 1e-31 | ||
| 2g76_A | 335 | Crystal Structure Of Human 3-Phosphoglycerate Dehyd | 6e-30 | ||
| 1dxy_A | 333 | Structure Of D-2-Hydroxyisocaproate Dehydrogenase L | 6e-29 | ||
| 3k5p_A | 416 | Crystal Structure Of Amino Acid-Binding Act: D-Isom | 1e-27 | ||
| 2dld_A | 337 | D-Lactate Dehydrogenase Complexed With Nadh And Oxa | 6e-27 | ||
| 2ekl_A | 313 | Structure Of St1218 Protein From Sulfolobus Tokodai | 6e-26 | ||
| 2dbr_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 3e-25 | ||
| 1j49_A | 333 | Insights Into Domain Closure, Substrate Specificity | 3e-25 | ||
| 4dgs_A | 340 | The Crystals Structure Of Dehydrogenase From Rhizob | 9e-25 | ||
| 1j4a_A | 333 | Insights Into Domain Closure, Substrate Specificity | 3e-24 | ||
| 2go1_A | 401 | Nad-Dependent Formate Dehydrogenase From Pseudomona | 4e-24 | ||
| 2nac_A | 393 | High Resolution Structures Of Holo And Apo Formate | 4e-24 | ||
| 2gug_A | 401 | Nad-dependent Formate Dehydrogenase From Pseudomona | 5e-24 | ||
| 2dbq_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 8e-24 | ||
| 2yq4_A | 343 | Crystal Structure Of D-isomer Specific 2-hydroxyaci | 9e-24 | ||
| 2cuk_A | 311 | Crystal Structure Of Tt0316 Protein From Thermus Th | 3e-23 | ||
| 2p9c_A | 410 | Crystal Structure Of Serine Bound G336v Mutant Of E | 5e-23 | ||
| 3gg9_A | 352 | Crystal Structure Of Putative D-3-Phosphoglycerate | 6e-23 | ||
| 2p9g_A | 410 | Crystal Structure Of Serine Bound G336v,G337v Doubl | 6e-23 | ||
| 2gsd_A | 402 | Nad-dependent Formate Dehydrogenase From Bacterium | 7e-23 | ||
| 3fn4_A | 401 | Apo-form Of Nad-dependent Formate Dehydrogenase Fro | 7e-23 | ||
| 1gdh_A | 320 | Crystal Structure Of A Nad-Dependent D-Glycerate De | 1e-22 | ||
| 3ba1_A | 333 | Structure Of Hydroxyphenylpyruvate Reductase From C | 3e-22 | ||
| 2fss_A | 365 | Candida Boidinii Formate Dehydrogenase (Fdh) K47e M | 6e-22 | ||
| 2j6i_A | 364 | Candida Boidinii Formate Dehydrogenase (Fdh) C-Term | 6e-22 | ||
| 4e5k_A | 329 | Thermostable Phosphite Dehydrogenase In Complex Wit | 1e-21 | ||
| 4e5n_A | 330 | Thermostable Phosphite Dehydrogenase In Complex Wit | 1e-21 | ||
| 1psd_A | 409 | The Allosteric Ligand Site In The Vmax-Type Coopera | 2e-21 | ||
| 4g2n_A | 345 | Crystal Structure Of Putative D-Isomer Specific 2-H | 7e-21 | ||
| 1sc6_A | 404 | Crystal Structure Of W139g D-3-Phosphoglycerate Deh | 8e-21 | ||
| 4e5m_A | 329 | Thermostable Phosphite Dehydrogenase E175aA176R IN | 8e-21 | ||
| 4e5p_A | 332 | Thermostable Phosphite Dehydrogenase A176r Variant | 9e-21 | ||
| 1xdw_A | 331 | Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase | 2e-20 | ||
| 4ebf_A | 334 | Semet Thermostable Phosphite Dehydrogenase Glu175-A | 2e-20 | ||
| 1yba_A | 410 | The Active Form Of Phosphoglycerate Dehydrogenase L | 1e-19 | ||
| 2gcg_A | 330 | Ternary Crystal Structure Of Human Glyoxylate Reduc | 7e-19 | ||
| 3n7u_A | 351 | Nad-Dependent Formate Dehydrogenase From Higher-Pla | 6e-18 | ||
| 3naq_A | 357 | Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro | 7e-18 | ||
| 2h1s_A | 328 | Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE | 8e-18 | ||
| 3hg7_A | 324 | Crystal Structure Of D-Isomer Specific 2-Hydroxyaci | 2e-14 | ||
| 3oet_A | 381 | D-Erythronate-4-Phosphate Dehydrogenase Complexed W | 2e-14 | ||
| 4hy3_A | 365 | Crystal Structure Of A Phosphoglycerate Oxidoreduct | 5e-13 | ||
| 2o4c_A | 380 | Crystal Structure Of D-erythronate-4-phosphate Dehy | 1e-12 | ||
| 3evt_A | 324 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 1e-12 | ||
| 3kbo_A | 315 | 2.14 Angstrom Crystal Structure Of Putative Oxidore | 5e-09 | ||
| 3gvx_A | 290 | Crystal Structure Of Glycerate Dehydrogenase Relate | 4e-04 |
| >pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358 | Back alignment and structure |
|
| >pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358 | Back alignment and structure |
|
| >pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358 | Back alignment and structure |
|
| >pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336 | Back alignment and structure |
|
| >pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347 | Back alignment and structure |
|
| >pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307 | Back alignment and structure |
|
| >pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334 | Back alignment and structure |
|
| >pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333 | Back alignment and structure |
|
| >pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348 | Back alignment and structure |
|
| >pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348 | Back alignment and structure |
|
| >pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348 | Back alignment and structure |
|
| >pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529 | Back alignment and structure |
|
| >pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528 | Back alignment and structure |
|
| >pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335 | Back alignment and structure |
|
| >pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333 | Back alignment and structure |
|
| >pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416 | Back alignment and structure |
|
| >pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337 | Back alignment and structure |
|
| >pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313 | Back alignment and structure |
|
| >pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334 | Back alignment and structure |
|
| >pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340 | Back alignment and structure |
|
| >pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401 | Back alignment and structure |
|
| >pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393 | Back alignment and structure |
|
| >pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401 | Back alignment and structure |
|
| >pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334 | Back alignment and structure |
|
| >pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343 | Back alignment and structure |
|
| >pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311 | Back alignment and structure |
|
| >pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352 | Back alignment and structure |
|
| >pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402 | Back alignment and structure |
|
| >pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401 | Back alignment and structure |
|
| >pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320 | Back alignment and structure |
|
| >pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333 | Back alignment and structure |
|
| >pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365 | Back alignment and structure |
|
| >pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364 | Back alignment and structure |
|
| >pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329 | Back alignment and structure |
|
| >pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409 | Back alignment and structure |
|
| >pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345 | Back alignment and structure |
|
| >pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404 | Back alignment and structure |
|
| >pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329 | Back alignment and structure |
|
| >pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332 | Back alignment and structure |
|
| >pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331 | Back alignment and structure |
|
| >pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334 | Back alignment and structure |
|
| >pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330 | Back alignment and structure |
|
| >pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351 | Back alignment and structure |
|
| >pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357 | Back alignment and structure |
|
| >pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328 | Back alignment and structure |
|
| >pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324 | Back alignment and structure |
|
| >pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381 | Back alignment and structure |
|
| >pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365 | Back alignment and structure |
|
| >pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380 | Back alignment and structure |
|
| >pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324 | Back alignment and structure |
|
| >pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315 | Back alignment and structure |
|
| >pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290 | Back alignment and structure |
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 501 | |||
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 100.0 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 100.0 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 100.0 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 100.0 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 100.0 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 100.0 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 100.0 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 100.0 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 100.0 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 100.0 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 100.0 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 100.0 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 100.0 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 100.0 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 100.0 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 100.0 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 100.0 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 100.0 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 100.0 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 100.0 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 100.0 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 100.0 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 100.0 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 100.0 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 100.0 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 100.0 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 100.0 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 100.0 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 100.0 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 100.0 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 100.0 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 100.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 100.0 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 100.0 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 100.0 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.94 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 99.9 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.89 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 99.88 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 99.8 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 99.78 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 99.73 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 99.69 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 99.69 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 99.65 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 99.65 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 99.57 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.42 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.42 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.36 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.34 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.33 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.32 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.31 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.3 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.3 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.28 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.28 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.27 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.25 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 99.25 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.24 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.24 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 99.23 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.19 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 99.16 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.15 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.14 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.12 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.11 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.1 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.1 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.09 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.08 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 99.08 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.07 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.06 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.06 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.05 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 99.03 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.03 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.03 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.02 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.95 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.48 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.93 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.93 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.9 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.89 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 98.88 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.83 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.83 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.82 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.82 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.81 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 98.79 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 98.78 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.76 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.75 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 98.75 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 98.74 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.74 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.72 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 98.69 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 98.68 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 98.67 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.66 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 98.63 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.61 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.59 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.58 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.55 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.53 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.53 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.48 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 98.46 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.44 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.42 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 98.4 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.4 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 98.4 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.37 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 98.37 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 98.34 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.34 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.34 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 98.33 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 98.31 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 98.3 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.3 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.28 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 98.28 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 98.28 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 98.27 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.25 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.24 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.24 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 98.24 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.24 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.22 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.2 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.18 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 98.16 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 98.15 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 98.14 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 98.13 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 98.13 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 98.13 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 98.11 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 98.1 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.1 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 98.09 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 98.07 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.07 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 98.06 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.98 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.95 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 97.95 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.93 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.92 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.9 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 97.87 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.86 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.85 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.84 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.78 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 97.76 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.75 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.7 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.69 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.67 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.67 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.65 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.64 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.63 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.62 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.62 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.61 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.6 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.59 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.59 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.57 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 97.57 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.55 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.55 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.53 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.52 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.49 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.49 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 97.48 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.47 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.45 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.44 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.43 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.43 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.43 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.41 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.39 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.38 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.37 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.37 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.37 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 97.36 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.36 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.35 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.32 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 97.31 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 97.3 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 97.29 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.29 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.27 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.26 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.25 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.25 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.24 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.2 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.18 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.17 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.17 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.17 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.15 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.14 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.14 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 97.14 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.13 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 97.11 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 97.11 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.07 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.05 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 97.04 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.03 | |
| 1pg5_A | 299 | Aspartate carbamoyltransferase; 2.60A {Sulfolobus | 97.02 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.01 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.99 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 96.99 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.96 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 96.95 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.95 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 96.95 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 96.93 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.93 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 96.91 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 96.9 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.86 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 96.85 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.85 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 96.85 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.84 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.84 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 96.8 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 96.8 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 96.77 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.77 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.74 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.73 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.72 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 96.72 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.7 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.7 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.65 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.65 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.64 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 96.63 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 96.63 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.61 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.61 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 96.6 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 96.58 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 96.55 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 96.54 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 96.53 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 96.52 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.51 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 96.5 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.5 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.49 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.49 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 96.48 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 96.47 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.47 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 96.46 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 96.46 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.45 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 96.45 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 96.45 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.44 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.43 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.43 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.42 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.42 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 96.42 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 96.41 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.41 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.4 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.38 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 96.38 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.34 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 96.34 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 96.33 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 96.33 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.32 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 96.32 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 96.31 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 96.3 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.26 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 96.26 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.26 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.25 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 96.24 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 96.23 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.23 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.22 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.21 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 96.2 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.17 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.16 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.14 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 96.13 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.13 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.11 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.11 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.11 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 96.09 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 96.08 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.08 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 96.08 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 96.07 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.06 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.06 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.05 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.02 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 96.02 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.0 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.0 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 95.96 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 95.95 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.93 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.93 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 95.92 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.92 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 95.92 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.92 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.91 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 95.91 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.9 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.9 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 95.87 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.86 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 95.85 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.84 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 95.83 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 95.82 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 95.75 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.75 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 95.73 | |
| 1js1_X | 324 | Transcarbamylase; alpha/beta topology, two domains | 95.72 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 95.69 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 95.69 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 95.63 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.62 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 95.61 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 95.6 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 95.59 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.57 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.57 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.53 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.51 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 95.51 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 95.5 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.5 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 95.49 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 95.48 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.47 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.45 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 95.44 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 95.44 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.4 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.35 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.34 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 95.34 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.33 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.33 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.33 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.32 | |
| 1zq6_A | 359 | Otcase, ornithine carbamoyltransferase; alpha/beta | 95.32 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.31 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.3 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 95.3 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.3 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 95.3 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 95.3 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 95.28 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.28 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 95.26 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 95.26 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 95.25 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.25 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 95.25 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.24 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 95.23 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.23 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.22 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 95.21 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 95.21 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 95.21 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.2 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.19 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 95.18 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 95.17 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 95.17 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.16 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 95.16 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 95.14 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 95.14 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.09 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 95.07 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.06 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 95.06 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.04 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.04 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 95.04 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 95.04 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 95.04 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.0 | |
| 2we8_A | 386 | Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc | 94.97 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 94.96 | |
| 4h31_A | 358 | Otcase, ornithine carbamoyltransferase; structural | 94.95 | |
| 3r3j_A | 456 | Glutamate dehydrogenase; rossman fold, oxidoreduct | 94.94 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 94.93 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.91 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.91 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 94.9 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 94.89 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 94.89 | |
| 4ekn_B | 306 | Aspartate carbamoyltransferase; atcase, aspartate | 94.89 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 94.89 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 94.88 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 94.85 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.83 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.8 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 94.79 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 94.77 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.77 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 94.76 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 94.75 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.73 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 94.71 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 94.7 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.66 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 94.66 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 94.65 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 94.62 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 94.61 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 94.61 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 94.6 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 94.59 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.55 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 94.53 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 94.52 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 94.51 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 94.49 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 94.48 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 94.47 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 94.43 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 94.42 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.42 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 94.4 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 94.38 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 94.36 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 94.32 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.31 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 94.29 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 94.28 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 94.26 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 94.24 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 94.24 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 94.23 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.22 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 94.21 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 94.15 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.12 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.12 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 94.09 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.08 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 94.07 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 94.04 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 94.04 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 94.02 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 94.01 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 94.0 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 93.99 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 93.98 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.93 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.93 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 93.93 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 93.93 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 93.92 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 93.91 |
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-67 Score=543.40 Aligned_cols=333 Identities=76% Similarity=1.203 Sum_probs=295.4
Q ss_pred CCCCCCCCEEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCc
Q psy7383 22 NGPMQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGS 101 (501)
Q Consensus 22 ~~~m~~kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~ga 101 (501)
+++++.||+|++|+...+..+++.++++.++.+++..+.+|+.++.+++++++++|....+++++|+++|+||||++.++
T Consensus 15 ~~~~~~kp~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~ 94 (347)
T 1mx3_A 15 VPRGSHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGS 94 (347)
T ss_dssp ------CCEEEESSCSCCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSS
T ss_pred CCCCCCCCEEEEEcCCcchhhHHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEccc
Confidence 45557799999999777677888898888888888777777777666677777888877899999999999999999999
Q ss_pred cccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEee
Q psy7383 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIV 181 (501)
Q Consensus 102 G~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIV 181 (501)
|+|+||+++|+++||.|+|++|+++++||||++++||+++|++.++++.+++|.|++.....+....+..+|+|+|||||
T Consensus 95 G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGII 174 (347)
T 1mx3_A 95 GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGII 174 (347)
T ss_dssp CCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEE
T ss_pred ccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999997543222222223468999999999
Q ss_pred ccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcE
Q psy7383 182 GLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAF 261 (501)
Q Consensus 182 GlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAi 261 (501)
|+|.||+.+|++|++|||+|++||++.........|++.+.++++++++||+|++|||++++|+++|+++.|++||+|++
T Consensus 175 G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai 254 (347)
T 1mx3_A 175 GLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 254 (347)
T ss_dssp CCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEE
T ss_pred eECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCE
Confidence 99999999999999999999999998765445556777666899999999999999999999999999999999999999
Q ss_pred EEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q psy7383 262 LVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIV 341 (501)
Q Consensus 262 lINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~ 341 (501)
|||++||.++|+++|+++|++|+|.||+||||+.||++..++|||.++||++|||++++|+++.+++.+++++||++|++
T Consensus 255 lIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~~ 334 (347)
T 1mx3_A 255 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAIT 334 (347)
T ss_dssp EEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999986436899999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccc
Q psy7383 342 GRIPDCLRNCVNK 354 (501)
Q Consensus 342 G~~p~~l~N~Vn~ 354 (501)
|+.|.++.|+||+
T Consensus 335 g~~~~~l~~~v~~ 347 (347)
T 1mx3_A 335 GRIPDSLKNCVNK 347 (347)
T ss_dssp SCTTTTCSSBCC-
T ss_pred CCCCcccCCCCCC
Confidence 9988888999986
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-67 Score=542.20 Aligned_cols=276 Identities=34% Similarity=0.498 Sum_probs=251.6
Q ss_pred hccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHH
Q psy7383 68 LNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWL 147 (501)
Q Consensus 68 l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~ 147 (501)
+.++++++++...++++++|+++|+||||++.|+|+||||+++|+++||.|+|+||+++++||||++++||++.|++..+
T Consensus 40 l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~ 119 (334)
T 3kb6_A 40 LKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRI 119 (334)
T ss_dssp HHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccc
Confidence 45678888887788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHH
Q psy7383 148 ANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDL 227 (501)
Q Consensus 148 ~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdel 227 (501)
++.++++.|+.... ...++|+|+||||||+|+||+.+|+++++|||+|++||++.... ....++.. .+++|+
T Consensus 120 ~~~~~~~~~~~~~~------~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~-~~~~~~~~-~~l~el 191 (334)
T 3kb6_A 120 EDRVKKLNFSQDSE------ILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED-LKEKGCVY-TSLDEL 191 (334)
T ss_dssp HHHHHTTCCCCCGG------GCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHTTCEE-CCHHHH
T ss_pred cccccccccccccc------cccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchh-hhhcCcee-cCHHHH
Confidence 99999999875322 12368999999999999999999999999999999999886543 33445654 489999
Q ss_pred HhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCC----
Q psy7383 228 LFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQG---- 303 (501)
Q Consensus 228 L~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~---- 303 (501)
|++||||++|||+|++|++|||++.|++||+|++|||+|||++|||+||+++|++|+|+||+||||++||++. +|
T Consensus 192 l~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~-~~~~~~ 270 (334)
T 3kb6_A 192 LKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILI-LKKYTE 270 (334)
T ss_dssp HHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHH-TTGGGG
T ss_pred HhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcc-cccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865 45
Q ss_pred -----------CCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCcccc
Q psy7383 304 -----------NLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCV 352 (501)
Q Consensus 304 -----------pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~V 352 (501)
|||.+|||++|||+||+|.|+.+++.+++++||++|++|+.+....|+|
T Consensus 271 ~~~~~~~~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n~v 330 (334)
T 3kb6_A 271 GKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNFV 330 (334)
T ss_dssp TCCCHHHHHHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGGEE
T ss_pred cccccccccchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCCcC
Confidence 6889999999999999999999999999999999999999665445555
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-66 Score=533.50 Aligned_cols=323 Identities=26% Similarity=0.316 Sum_probs=273.8
Q ss_pred CCCCCCC--CCCCEEEEecCCCCCcccccccccceEEEcCC---CChHHHHHHhhccceEEEEeccCCCCHHHHhcC-CC
Q psy7383 19 PISNGPM--QTRPLVALLDGRDCSIEMPILKDVATVAFCDA---QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKF-KT 92 (501)
Q Consensus 19 ~~~~~~m--~~kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~---~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~-p~ 92 (501)
+++...| ++|++|++.+... +..++.|++..++.+... .+.+++.+. +.++|+++++...++++++|+++ |+
T Consensus 17 ~~~~~~~~~~~~~kvlv~~~~~-~~~~~~l~~~~~v~~~~~~~~~~~~~l~~~-~~~~d~li~~~~~~i~~~~l~~~~~~ 94 (345)
T 4g2n_A 17 NLYFQSMSTHPIQKAFLCRRFT-PAIEAELRQRFDLEVNLEDTVLTPSGIASR-AHGAEVLFVTATEAITAEVIRKLQPG 94 (345)
T ss_dssp ----------CCCEEEESSCCC-HHHHHHHHHHSEEEECTTCCCCCHHHHHHH-TTTCSEEEECTTSCBCHHHHHHTTTT
T ss_pred ceeeeecccCCCCEEEEeCCCC-HHHHHHHHccCCEEEecCCCCCCHHHHHHH-hcCCeEEEEeCCCCCCHHHHHhhcCC
Confidence 4444444 3578888887643 234456666667776432 345666654 46788877776678999999998 79
Q ss_pred CcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhcccccc
Q psy7383 93 LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCAR 172 (501)
Q Consensus 93 LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~ 172 (501)
||||++.|+|+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|..... .....++
T Consensus 95 Lk~I~~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~----~~~~g~~ 170 (345)
T 4g2n_A 95 LKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGP----TQLLGMG 170 (345)
T ss_dssp CCEEEESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCT----TTTCBCC
T ss_pred ceEEEEcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCc----ccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999853210 0112368
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
|+||||||||+|+||+.+|++|++|||+|++||++....... .++..+.++++++++||+|++|||+|++|+++|+++.
T Consensus 171 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~ 249 (345)
T 4g2n_A 171 LTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE-EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDR 249 (345)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-TTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHH
T ss_pred cCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh-cCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHH
Confidence 999999999999999999999999999999999986432222 2677667999999999999999999999999999999
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHH
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMA 332 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~ 332 (501)
|++||+|++|||++||++||+++|+++|++|+|+||+||||++|| +. ++|||++|||++|||+|++|.++.+++.+++
T Consensus 250 l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP-~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~ 327 (345)
T 4g2n_A 250 IAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AI-DPRYRSLDNIFLTPHIGSATHETRDAMGWLL 327 (345)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SC-CTTGGGCTTEEECCSCTTCBHHHHHHHHHHH
T ss_pred HhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC-CC-CchHHhCCCEEEcCccCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 54 8999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCccccc
Q psy7383 333 ASEIRRAIVGRIPDCLRNCVN 353 (501)
Q Consensus 333 ~~ni~~~l~G~~p~~l~N~Vn 353 (501)
++||.+|++|+.| .|+|+
T Consensus 328 ~~ni~~~l~g~~~---~~~V~ 345 (345)
T 4g2n_A 328 IQGIEALNQSDVP---DNLIS 345 (345)
T ss_dssp HHHHHHHHTTCCC---TTBCC
T ss_pred HHHHHHHHcCCCC---CCCcC
Confidence 9999999999865 45653
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-65 Score=524.48 Aligned_cols=316 Identities=28% Similarity=0.368 Sum_probs=277.3
Q ss_pred CCEEEEecCCCCCcccccccccceEEEcCC---CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccc
Q psy7383 28 RPLVALLDGRDCSIEMPILKDVATVAFCDA---QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVD 104 (501)
Q Consensus 28 kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~---~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D 104 (501)
+++|++.+... +..++.|++..++.+.+. .+.+++.+. +.++++++++....+++++|+++|+||||++.++|+|
T Consensus 2 ~~kvlv~~~~~-~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G~d 79 (330)
T 4e5n_A 2 LPKLVITHRVH-EEILQLLAPHCELITNQTDSTLTREEILRR-CRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFD 79 (330)
T ss_dssp CCEEEECSCCC-HHHHHHHTTTCEEECCCSSSCCCHHHHHHH-HTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSCCT
T ss_pred CCEEEEecCCC-HHHHHHHHhCCeEEEecCCCCCCHHHHHHH-hCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCccc
Confidence 56788876543 344567777777776532 245666654 4678887776667899999999999999999999999
Q ss_pred ccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccc
Q psy7383 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLG 184 (501)
Q Consensus 105 ~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG 184 (501)
+||+++|+++||.|+|++|+++++||||++++||+++|++..+++.+++|+|... +. ....++|+|+||||||+|
T Consensus 80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~----~~-~~~~~~l~g~tvGIIG~G 154 (330)
T 4e5n_A 80 NFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGW----QP-RFYGTGLDNATVGFLGMG 154 (330)
T ss_dssp TBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSC----CS-CCCCCCSTTCEEEEECCS
T ss_pred ccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCcccc----Cc-cccCCccCCCEEEEEeeC
Confidence 9999999999999999999999999999999999999999999999999998521 00 112367999999999999
Q ss_pred hHHHHHHHHHHhCCCEEEEECCCC-CchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEE
Q psy7383 185 RIGSAVALRAKAFGFNVIFYDPYL-PDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV 263 (501)
Q Consensus 185 ~IG~~iA~~L~afG~~Vi~~dr~~-~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilI 263 (501)
+||+.+|++|++|||+|++||++. ........|+... ++++++++||+|++|||+|++|+++|+++.|+.||+|++||
T Consensus 155 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailI 233 (330)
T 4e5n_A 155 AIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLV 233 (330)
T ss_dssp HHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEE
Confidence 999999999999999999999987 4444555677654 89999999999999999999999999999999999999999
Q ss_pred EcCCCCccCHHHHHHHHHcCCceEEEEecCCCC-------CCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHH
Q psy7383 264 NTARGGLVDDDSLAAALKQGRIRAAALDVHESE-------PYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEI 336 (501)
Q Consensus 264 NvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~E-------Pl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni 336 (501)
|++||++||+++|+++|++|+|.||+||||++| |++. ++|||++|||++|||+||+|.++.+++.+++++||
T Consensus 234 N~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~-~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni 312 (330)
T 4e5n_A 234 NPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQI-DPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNI 312 (330)
T ss_dssp ECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSC-CHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHH
T ss_pred ECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCC-CchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9876 89999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCccccccc
Q psy7383 337 RRAIVGRIPDCLRNCVNKE 355 (501)
Q Consensus 337 ~~~l~G~~p~~l~N~Vn~e 355 (501)
.+|++|+.| .|+||++
T Consensus 313 ~~~~~g~~~---~~~vn~~ 328 (330)
T 4e5n_A 313 LQALAGERP---INAVNRL 328 (330)
T ss_dssp HHHHTTSCC---TTBSSCC
T ss_pred HHHHcCCCC---CCccCCC
Confidence 999999865 4677764
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=524.10 Aligned_cols=323 Identities=25% Similarity=0.373 Sum_probs=279.0
Q ss_pred CEEEEecCCCCC----cccccccccceEEEcCCC--ChHHHHHHhhccceEEEEe-ccCCCCHHHHhcCCCCcEEEEcCc
Q psy7383 29 PLVALLDGRDCS----IEMPILKDVATVAFCDAQ--STSEIHEKVLNEAVGALMW-HTIILTKEDLEKFKTLRIIVRIGS 101 (501)
Q Consensus 29 p~IvvLd~~~~~----~e~~~L~~~~~v~~~~~~--~~~ei~~~~l~~a~~vli~-~~~~l~~e~l~~~p~LK~I~~~ga 101 (501)
.||++++..... ..+..|++ .++.+++.. +.+++.+. +.++|+++++ ....+++++|+++|+||+|++.++
T Consensus 3 mki~~~d~~~~~~~~~~~~~~l~~-~~v~~~~~~~~~~~~l~~~-~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~ 80 (352)
T 3gg9_A 3 LKIAVLDDYQDAVRKLDCFSLLQD-HEVKVFNNTVKGVGQLAAR-VADVEALVLIRERTRVTRQLLDRLPKLKIISQTGR 80 (352)
T ss_dssp CEEEECCCTTCCGGGSGGGGGGTT-SEEEECCSCCCSHHHHHHH-TTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESSC
T ss_pred eEEEEEcCccccchhhhhhhhhcC-ceEEEecCCCCCHHHHHHH-hcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCc
Confidence 358888875432 12344544 567666543 45566654 4678887774 557899999999999999999999
Q ss_pred cc----cccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCch---hhhhhcccccccc
Q psy7383 102 GV----DNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPE---QLREAASGCARIR 174 (501)
Q Consensus 102 G~----D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~---~~~~~~~g~~~L~ 174 (501)
|+ |+||+++|+++||.|+|+||+ +++||||++++||+++|++..+++.+++|.|..... .+.......++|+
T Consensus 81 G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~ 159 (352)
T 3gg9_A 81 VSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLK 159 (352)
T ss_dssp CCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCT
T ss_pred ccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCC
Confidence 99 999999999999999999999 999999999999999999999999999999964310 0100111246899
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
|+||||||+|.||+.+|++|++|||+|++||++.........|++.+.++++++++||+|++|||+|++|+++|+++.|+
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~ 239 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLT 239 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHh
Confidence 99999999999999999999999999999998854444456788777799999999999999999999999999999999
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHH
Q psy7383 255 QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAAS 334 (501)
Q Consensus 255 ~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ 334 (501)
+||+|++|||++||++||+++|+++|++|+|+||+||||++||++. ++|||++|||++|||+||+|.++.+++.+++++
T Consensus 240 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ 318 (352)
T 3gg9_A 240 RMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQ-GHTLLRMENCICTPHIGYVERESYEMYFGIAFQ 318 (352)
T ss_dssp TSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCS-CCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHH
T ss_pred hCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCC-CChhhcCCCEEECCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccccccccccC
Q psy7383 335 EIRRAIVGRIPDCLRNCVNKEYFPS 359 (501)
Q Consensus 335 ni~~~l~G~~p~~l~N~Vn~e~~~~ 359 (501)
||++|++|+ | .|+||++.+..
T Consensus 319 ni~~~~~G~-p---~~~Vn~~~~~~ 339 (352)
T 3gg9_A 319 NILDILQGN-V---DSVANPTALAP 339 (352)
T ss_dssp HHHHHHTTC-C---TTBSCGGGSSC
T ss_pred HHHHHHcCC-C---CcccCHHHHHH
Confidence 999999996 3 38999988663
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-65 Score=525.12 Aligned_cols=312 Identities=26% Similarity=0.383 Sum_probs=243.7
Q ss_pred CCCCEEEEecCCCCCcccccccccceEEEcCC-CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccc
Q psy7383 26 QTRPLVALLDGRDCSIEMPILKDVATVAFCDA-QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVD 104 (501)
Q Consensus 26 ~~kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~-~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D 104 (501)
++||+|++++... +..++.|++..++..... .+.+++.+++ .++++++++....+++++|+++|+||||++.|+|+|
T Consensus 28 ~~~~~vl~~~~~~-~~~~~~L~~~~~v~~~~~~~~~~~~~~~~-~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d 105 (340)
T 4dgs_A 28 NVKPDLLLVEPMM-PFVMDELQRNYSVHRLYQAADRPALEAAL-PSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGTD 105 (340)
T ss_dssp -----CEECSCCC-HHHHHTHHHHSCCEETTCGGGHHHHHHHG-GGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSCCT
T ss_pred CCCCEEEEECCCC-HHHHHHHhcCCcEEEeCCCCCHHHHHHHh-CCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCCcc
Confidence 3578888887643 234455655555555432 3456676666 778888877777899999999999999999999999
Q ss_pred ccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccc
Q psy7383 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLG 184 (501)
Q Consensus 105 ~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG 184 (501)
+||+++|+++||.|+|+||+++++||||++++||+++|++.++++.+++|.|..... ....++|+||||||||+|
T Consensus 106 ~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~-----~~~~~~l~gktiGIIGlG 180 (340)
T 4dgs_A 106 KVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQ-----LPLGHSPKGKRIGVLGLG 180 (340)
T ss_dssp TBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC-----------CCCCCCTTCEEEEECCS
T ss_pred ccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccC-----cCccccccCCEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999964210 011368999999999999
Q ss_pred hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEE
Q psy7383 185 RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264 (501)
Q Consensus 185 ~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilIN 264 (501)
+||+.+|++|++|||+|++||++.... .++....+++|++++||+|++|+|+|++|+++|+++.|+.||++++|||
T Consensus 181 ~IG~~vA~~l~~~G~~V~~~dr~~~~~----~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN 256 (340)
T 4dgs_A 181 QIGRALASRAEAFGMSVRYWNRSTLSG----VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVN 256 (340)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSSCCTT----SCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcccc----cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEE
Confidence 999999999999999999999986542 2345566899999999999999999999999999999999999999999
Q ss_pred cCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy7383 265 TARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRI 344 (501)
Q Consensus 265 vaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~ 344 (501)
++||++||+++|+++|++|+|+||+||||++||++. +|||++|||++|||+|++|.++.+++.+++++||.+|++|+.
T Consensus 257 ~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~--~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~ 334 (340)
T 4dgs_A 257 VARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIR--SEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEK 334 (340)
T ss_dssp CSCC--------------CCSSEEEESCCSSSSSCC--SHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCc--cchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999874 699999999999999999999999999999999999999996
Q ss_pred CCCCccccc
Q psy7383 345 PDCLRNCVN 353 (501)
Q Consensus 345 p~~l~N~Vn 353 (501)
+ .|+||
T Consensus 335 ~---~~~Vn 340 (340)
T 4dgs_A 335 A---PNTVN 340 (340)
T ss_dssp C---TTBC-
T ss_pred C---CCCcC
Confidence 5 46665
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-65 Score=526.54 Aligned_cols=302 Identities=24% Similarity=0.344 Sum_probs=261.0
Q ss_pred ccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEc-CccccccchhhhhhcCeEEee
Q psy7383 42 EMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRI-GSGVDNIDVKAAGELGIAVCN 120 (501)
Q Consensus 42 e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~-gaG~D~ID~~aa~~~GI~Vtn 120 (501)
.++.|++..++..++..+.+++.++.+.++++++ ...++++++|+++|+||+|++. ++|+|+||+++|+++||.|+|
T Consensus 48 ~~~~L~~~~~v~~~~~~~~~e~~~~~~~~~~~i~--~~~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V~n 125 (365)
T 4hy3_A 48 ARAALHSKYEIVEADPENIAGLGDDILGRARYII--GQPPLSAETLARMPALRSILNVESNLLNNMPYEVLFQRGIHVVT 125 (365)
T ss_dssp HHHHHHHHSEEEECCGGGGGGSCTTHHHHEEEEE--ECCCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHSCCEEEE
T ss_pred HHHHHhCCcEEEECCCCChHHHHHHhhCCeEEEE--eCCCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcCCeEEEe
Confidence 3556766677776554555565555555555443 3468999999999999999975 899999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCE
Q psy7383 121 VPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFN 200 (501)
Q Consensus 121 ~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~ 200 (501)
++|+++++||||++++||+++|++..+++.+++|+|.+.... .....+|+||||||||+|.||+.+|++|++|||+
T Consensus 126 ~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~----~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~ 201 (365)
T 4hy3_A 126 TGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEG----NASARLIAGSEIGIVGFGDLGKALRRVLSGFRAR 201 (365)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSS----TTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCE
T ss_pred CCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccc----cccccccCCCEEEEecCCcccHHHHHhhhhCCCE
Confidence 999999999999999999999999999999999996322110 1124689999999999999999999999999999
Q ss_pred EEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q psy7383 201 VIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAAL 280 (501)
Q Consensus 201 Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL 280 (501)
|++||++.........|+.. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||++||++||+++|+++|
T Consensus 202 V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL 280 (365)
T 4hy3_A 202 IRVFDPWLPRSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAV 280 (365)
T ss_dssp EEEECSSSCHHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHH
T ss_pred EEEECCCCCHHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHH
Confidence 99999986555455667765 48999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q psy7383 281 KQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355 (501)
Q Consensus 281 ~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e 355 (501)
++|+|+ |+||||++||++. ++|||++|||++|||+||+|.++..++.+++++||.+|++|+.|. ++||.+
T Consensus 281 ~~g~i~-aaLDV~~~EPl~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~~~~---~~vn~~ 350 (365)
T 4hy3_A 281 SSGHIV-AASDVYPEEPLPL-DHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGLPPM---RCKRAE 350 (365)
T ss_dssp HTTSSE-EEESCCSSSSCCT-TCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTCCCC---SSEECC
T ss_pred HcCCce-EEeeCCCCCCCCC-CChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCcc---cccccc
Confidence 999999 8999999999987 899999999999999999999999999999999999999999654 677743
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-63 Score=526.01 Aligned_cols=315 Identities=28% Similarity=0.349 Sum_probs=268.0
Q ss_pred CCCCEEEEecCCCCCcccccccccc--eEEEcCC-CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcc
Q psy7383 26 QTRPLVALLDGRDCSIEMPILKDVA--TVAFCDA-QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSG 102 (501)
Q Consensus 26 ~~kp~IvvLd~~~~~~e~~~L~~~~--~v~~~~~-~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG 102 (501)
+.+++|++++... +...+.|++.. ++.+.+. .+++++.+.+ .++++++++....+++++|+++|+||+|++.++|
T Consensus 13 ~~~~kIl~~~~i~-~~~~~~l~~~g~~~v~~~~~~~~~~~l~~~~-~~~d~l~v~~~~~i~~~~l~~~p~Lk~I~~~~~G 90 (416)
T 3k5p_A 13 RDRINVLLLEGIS-QTAVEYFKSSGYTNVTHLPKALDKADLIKAI-SSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVG 90 (416)
T ss_dssp GGGSCEEECSCCC-HHHHHHHHHTTCCCEEECSSCCCHHHHHHHH-TTCSEEEECSSCCBCHHHHHHCTTCCEEEECSSC
T ss_pred CCCcEEEEECCCC-HHHHHHHHHCCCcEEEECCCCCCHHHHHHHc-cCCEEEEEcCCCCCCHHHHHhCCCcEEEEECccc
Confidence 3467788887754 23445665532 6666543 3566666554 6778776666678999999999999999999999
Q ss_pred ccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeec
Q psy7383 103 VDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVG 182 (501)
Q Consensus 103 ~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVG 182 (501)
+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|.... ....+|+||||||||
T Consensus 91 ~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~-------~~~~el~gktvGIIG 163 (416)
T 3k5p_A 91 TNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA-------IGSREVRGKTLGIVG 163 (416)
T ss_dssp CTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC-------TTCCCSTTCEEEEEC
T ss_pred cCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC-------CCCccCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999996432 123689999999999
Q ss_pred cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEE
Q psy7383 183 LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL 262 (501)
Q Consensus 183 lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAil 262 (501)
+|+||+.+|++|++|||+|++||++..... .+...+.+++|++++||+|++|||+|++|+++|+++.|++||+|++|
T Consensus 164 lG~IG~~vA~~l~~~G~~V~~yd~~~~~~~---~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gail 240 (416)
T 3k5p_A 164 YGNIGSQVGNLAESLGMTVRYYDTSDKLQY---GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFL 240 (416)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECTTCCCCB---TTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEE
T ss_pred eCHHHHHHHHHHHHCCCEEEEECCcchhcc---cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEE
Confidence 999999999999999999999998753221 23455679999999999999999999999999999999999999999
Q ss_pred EEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCC---CCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q psy7383 263 VNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVF---QGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRA 339 (501)
Q Consensus 263 INvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~---~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~ 339 (501)
||++||.+||+++|+++|++|+|+||+||||+.||++.. ++|||++|||++|||+||+|.|+.+++..++++||.+|
T Consensus 241 IN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~ 320 (416)
T 3k5p_A 241 INNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEY 320 (416)
T ss_dssp EECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998752 37999999999999999999999999999999999999
Q ss_pred HhCCCCCCCccccccc
Q psy7383 340 IVGRIPDCLRNCVNKE 355 (501)
Q Consensus 340 l~G~~p~~l~N~Vn~e 355 (501)
++++.+ .|.||..
T Consensus 321 l~~g~~---~~~Vn~p 333 (416)
T 3k5p_A 321 SDVGST---VGAVNFP 333 (416)
T ss_dssp HHHCCC---TTBSSSC
T ss_pred HhhCCC---CceeeCC
Confidence 988754 4666643
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-63 Score=515.94 Aligned_cols=303 Identities=26% Similarity=0.352 Sum_probs=265.9
Q ss_pred ccccc-ceEEEcCCC--ChHHHHHHhhccceEEEEecc--CCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEe
Q psy7383 45 ILKDV-ATVAFCDAQ--STSEIHEKVLNEAVGALMWHT--IILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVC 119 (501)
Q Consensus 45 ~L~~~-~~v~~~~~~--~~~ei~~~~l~~a~~vli~~~--~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vt 119 (501)
+|++. .++.+++.. +.+++.+ .+.++++++++.. ..+++++|+++|+||||++.|+|+||||+++|+++||.|+
T Consensus 35 ~L~~~g~ev~~~~~~~~~~~~~~~-~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V~ 113 (351)
T 3jtm_A 35 WLESQGHQYIVTDDKEGPDCELEK-HIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVA 113 (351)
T ss_dssp HHHHTTCEEEEESCCSSTTSHHHH-HTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTCEEE
T ss_pred HHHHCCCEEEEeCCCCCCHHHHHH-HhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCeeEE
Confidence 44443 466665433 2345554 4577887666432 4689999999999999999999999999999999999999
Q ss_pred ecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCC
Q psy7383 120 NVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGF 199 (501)
Q Consensus 120 n~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~ 199 (501)
|++|+++.+||||++++||+++|++..+++.+++|.|.... ......+|+|+||||||+|+||+.+|++|++|||
T Consensus 114 n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~-----~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~ 188 (351)
T 3jtm_A 114 EVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAG-----IAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 188 (351)
T ss_dssp ECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHH-----HHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCC
T ss_pred ECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCcccc-----ccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999985311 1112357999999999999999999999999999
Q ss_pred EEEEECCCCC-chhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q psy7383 200 NVIFYDPYLP-DGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278 (501)
Q Consensus 200 ~Vi~~dr~~~-~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~ 278 (501)
+|++||++.. .+.....|+..+.++++++++||+|++|||+|++|+++|+++.|++||+|++|||++||++||+++|++
T Consensus 189 ~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~ 268 (351)
T 3jtm_A 189 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVD 268 (351)
T ss_dssp EEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHH
T ss_pred EEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHH
Confidence 9999998863 344556678777799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q psy7383 279 ALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355 (501)
Q Consensus 279 aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e 355 (501)
+|++|+|.||+||||++||++. +||||++|||++|||+||+|.++..++.+.+++|+.+|++|+. -...|+|+..
T Consensus 269 aL~~g~i~ga~lDV~~~EP~~~-~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~-~~~~~~i~~~ 343 (351)
T 3jtm_A 269 AVESGHIGGYSGDVWDPQPAPK-DHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGED-FPTENYIVKD 343 (351)
T ss_dssp HHHHTSEEEEEESCCSSSSCCT-TCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCC-CCGGGEEEET
T ss_pred HHHhCCccEEEeCCCCCCCCCC-CChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCC-CCCceEEecC
Confidence 9999999999999999999987 8999999999999999999999999999999999999999983 2356777655
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-63 Score=519.37 Aligned_cols=333 Identities=26% Similarity=0.310 Sum_probs=280.2
Q ss_pred CCCCCCCCCCE-EEEecCCC--C-Cc--cc-ccccccc-eEEEc-CCCC-hHHHHHHhhccceEEEEec--cCCCCHHHH
Q psy7383 20 ISNGPMQTRPL-VALLDGRD--C-SI--EM-PILKDVA-TVAFC-DAQS-TSEIHEKVLNEAVGALMWH--TIILTKEDL 87 (501)
Q Consensus 20 ~~~~~m~~kp~-IvvLd~~~--~-~~--e~-~~L~~~~-~v~~~-~~~~-~~ei~~~~l~~a~~vli~~--~~~l~~e~l 87 (501)
-.++.|.+.|+ |++++... . .. .+ +.|++.. ++.+. +... .+++.+. +.+++++++.. ...+++++|
T Consensus 30 ~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~l~~~-l~~ad~li~~~~~~~~i~~~~l 108 (393)
T 2nac_A 30 YPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERE-LVDADVVISQPFWPAYLTPERI 108 (393)
T ss_dssp CTTSCBCCCCSCCSSCTTSCCSBTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHH-HTTCSEEEEBTTBCCCBCHHHH
T ss_pred cCCCCCCCCCceEEEECccccccCchhhHHHHHHHhCCCEEEEecCCCCCHHHHHHh-ccCCCEEEEcCccCCCCCHHHH
Confidence 44555666777 88888854 1 11 22 2445443 55543 3322 3355544 46777765532 246899999
Q ss_pred hcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhc
Q psy7383 88 EKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAA 167 (501)
Q Consensus 88 ~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~ 167 (501)
+++|+||||++.++|+||||+++|+++||.|+|++++++++||||++++||++.|++..+++.++++.|.... ..
T Consensus 109 ~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~-----~~ 183 (393)
T 2nac_A 109 AKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD-----CV 183 (393)
T ss_dssp HHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH-----HH
T ss_pred hhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccc-----cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985211 01
Q ss_pred cccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 168 SGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 168 ~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
....+|+|+||||||+|+||+.+|++|++|||+|++||++... ......|+..+.++++++++||+|++|||+|++|++
T Consensus 184 ~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~ 263 (393)
T 2nac_A 184 SHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEH 263 (393)
T ss_dssp TTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTT
T ss_pred cCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHH
Confidence 1235799999999999999999999999999999999998643 444556777656899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+|+++.|++||++++|||++||.+||+++|+++|++|+|.||+||||++||++. ++|||++|||++|||+|++|.++..
T Consensus 264 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~-~~pL~~~~nvilTPHia~~T~e~~~ 342 (393)
T 2nac_A 264 MINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPK-DHPWRTMPYNGMTPHISGTTLTAQA 342 (393)
T ss_dssp CBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCT-TCGGGTSTTBCCCCSCTTCSHHHHH
T ss_pred HhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCC-CChhHcCCCEEECCCCCcCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999986 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccccccC
Q psy7383 327 ELREMAASEIRRAIVGRIPDCLRNCVNKEYFPS 359 (501)
Q Consensus 327 ~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e~~~~ 359 (501)
++.+++++||++|++|+.+.+..++|+...+..
T Consensus 343 ~~~~~~~~nl~~~~~G~~~~~~~~~v~~~~~~~ 375 (393)
T 2nac_A 343 RYAAGTREILECFFEGRPIRDEYLIVQGGALAG 375 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCCGGGEEEETTEEC-
T ss_pred HHHHHHHHHHHHHHcCCCCcceeEeccCCcccc
Confidence 999999999999999997766666677655554
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-63 Score=519.64 Aligned_cols=311 Identities=27% Similarity=0.358 Sum_probs=261.0
Q ss_pred CEEEEecCCCCCccccccccc-c-eEEEcC-CCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccc
Q psy7383 29 PLVALLDGRDCSIEMPILKDV-A-TVAFCD-AQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDN 105 (501)
Q Consensus 29 p~IvvLd~~~~~~e~~~L~~~-~-~v~~~~-~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ 105 (501)
++|++++... +...+.|++. . ++.+.+ ..+.+++.+. +.+++++++.....+++++|+++|+||||++.++|+||
T Consensus 5 ~kil~~~~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~l~~~-~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 82 (404)
T 1sc6_A 5 IKFLLVEGVH-QKALESLRAAGYTNIEFHKGALDDEQLKES-IRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQ 82 (404)
T ss_dssp CCEEECSCCC-HHHHHHHHHTTCCCEEECSSCCCHHHHHHH-TTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCCTT
T ss_pred eEEEEeCCCC-HHHHHHHHhCCCcEEEEcCCCCCHHHHHHH-hcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCcccCc
Confidence 3577776543 2334555543 2 566654 3456666554 46778766665678999999999999999999999999
Q ss_pred cchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccch
Q psy7383 106 IDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGR 185 (501)
Q Consensus 106 ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~ 185 (501)
||+++|+++||.|+|+|++|+.+||||++++||+++|++..+++.+++|.|.... ....+|+||||||||+|+
T Consensus 83 iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~-------~~~~el~gktlGiIGlG~ 155 (404)
T 1sc6_A 83 VDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA-------AGSFEARGKKLGIIGYGH 155 (404)
T ss_dssp BCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC------------CCCSTTCEEEEECCSH
T ss_pred cCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccC-------CCccccCCCEEEEEeECH
Confidence 9999999999999999999999999999999999999999999999999995321 123579999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 186 IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 186 IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
||+.+|++|++|||+|++||++..... .++..+.+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+
T Consensus 156 IG~~vA~~l~~~G~~V~~~d~~~~~~~---~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~ 232 (404)
T 1sc6_A 156 IGTQLGILAESLGMYVYFYDIENKLPL---GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINA 232 (404)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCCC---TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhcc---CCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEEC
Confidence 999999999999999999998754321 23555668999999999999999999999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCC---CCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhC
Q psy7383 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNV---FQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVG 342 (501)
Q Consensus 266 aRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~---~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G 342 (501)
|||.+||+++|+++|++|+|+||+||||+.||++. .++|||++|||++|||+|++|.|+.+++..++++|+.+|++|
T Consensus 233 aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g 312 (404)
T 1sc6_A 233 SRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDN 312 (404)
T ss_dssp SCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999863 247999999999999999999999999999999999999998
Q ss_pred CCCCCCcccccc
Q psy7383 343 RIPDCLRNCVNK 354 (501)
Q Consensus 343 ~~p~~l~N~Vn~ 354 (501)
+.+ .|.||.
T Consensus 313 ~~~---~~~vn~ 321 (404)
T 1sc6_A 313 GST---LSAVNF 321 (404)
T ss_dssp CCC---TTBSSS
T ss_pred CCC---cceecc
Confidence 854 567774
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-64 Score=512.08 Aligned_cols=309 Identities=23% Similarity=0.287 Sum_probs=260.4
Q ss_pred CEEEEecCCCCCcccccc-cc-cceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccccc
Q psy7383 29 PLVALLDGRDCSIEMPIL-KD-VATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNI 106 (501)
Q Consensus 29 p~IvvLd~~~~~~e~~~L-~~-~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~I 106 (501)
.||++++... ....+.| ++ ..++.+....+.+++.+. +.++++++.+. .+++++|+++|+||||++.++|+|+|
T Consensus 6 mkili~~~~~-~~~~~~L~~~~~p~~~~~~~~~~~~~~~~-~~~ad~li~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~i 81 (324)
T 3hg7_A 6 RTLLLLSQDN-AHYERLLKAAHLPHLRILRADNQSDAEKL-IGEAHILMAEP--ARAKPLLAKANKLSWFQSTYAGVDVL 81 (324)
T ss_dssp EEEEEESTTH-HHHHHHHHHSCCTTEEEEECSSHHHHHHH-GGGCSEEEECH--HHHGGGGGGCTTCCEEEESSSCCGGG
T ss_pred cEEEEecCCC-HHHHHHHhhccCCCeEEEeCCChhHHHHH-hCCCEEEEECC--CCCHHHHhhCCCceEEEECCCCCCcc
Confidence 4677776643 2223455 33 335555554455565544 46777766543 35678899999999999999999999
Q ss_pred chhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchH
Q psy7383 107 DVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRI 186 (501)
Q Consensus 107 D~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~I 186 (501)
|+++++ +||.|+|++|+++.+||||++++||+++|++..+++.+++|.|.... ..+|+|+||||||+|.|
T Consensus 82 d~~~~~-~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~---------~~~l~g~tvGIIGlG~I 151 (324)
T 3hg7_A 82 LDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHP---------YQGLKGRTLLILGTGSI 151 (324)
T ss_dssp SCTTSC-CSSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC---------CCCSTTCEEEEECCSHH
T ss_pred ChHHHh-CCEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCC---------CcccccceEEEEEECHH
Confidence 999885 59999999999999999999999999999999999999999986421 25799999999999999
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
|+.+|++|++|||+|++||++........ ......+++|++++||+|++|||+|++|+++|+++.|++||+|++|||++
T Consensus 152 G~~vA~~l~~~G~~V~~~dr~~~~~~~~~-~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~a 230 (324)
T 3hg7_A 152 GQHIAHTGKHFGMKVLGVSRSGRERAGFD-QVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVG 230 (324)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCCCCTTCS-EEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECS
T ss_pred HHHHHHHHHhCCCEEEEEcCChHHhhhhh-cccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 99999999999999999998864321111 12234589999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy7383 267 RGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPD 346 (501)
Q Consensus 267 RG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~ 346 (501)
||++||+++|+++|++|+|+||+||||++||++. ++|||++|||++|||+||+|.+ .++.+++++||++|++|+.
T Consensus 231 RG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~-~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~~G~~-- 305 (324)
T 3hg7_A 231 RGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPA-DSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQP-- 305 (324)
T ss_dssp CGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCT-TCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHHTTCC--
T ss_pred CchhhCHHHHHHHHHcCCceEEEeccCCCCCCCC-CChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHHcCCC--
Confidence 9999999999999999999999999999999987 8999999999999999999976 5799999999999999984
Q ss_pred CCcccccccccc
Q psy7383 347 CLRNCVNKEYFP 358 (501)
Q Consensus 347 ~l~N~Vn~e~~~ 358 (501)
+.|+||++.+.
T Consensus 306 -~~~~V~~~~~~ 316 (324)
T 3hg7_A 306 -LDGKIDFDKGY 316 (324)
T ss_dssp -CTTBCCCC---
T ss_pred -CcceEChhhhc
Confidence 46899988654
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-63 Score=514.65 Aligned_cols=310 Identities=28% Similarity=0.365 Sum_probs=263.3
Q ss_pred EEEEecCCCCCccccccccc-----ceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHH-HHhcCC--CCcEEEEcCc
Q psy7383 30 LVALLDGRDCSIEMPILKDV-----ATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKE-DLEKFK--TLRIIVRIGS 101 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~-----~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e-~l~~~p--~LK~I~~~ga 101 (501)
||++++..+ .+.+.++++ .++.+.+....+++. +.+.++|++++....+++++ +|++++ +||||++.++
T Consensus 3 ki~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~ 79 (343)
T 2yq5_A 3 KIAMYNVSP--IEVPYIEDWAKKNDVEIKTTDQALTSATV-DLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIV 79 (343)
T ss_dssp EEEEESCCG--GGHHHHHHHHHHHTCEEEEESSCCSTTGG-GGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSS
T ss_pred eEEEEecCc--ccHHHHHHHHHhCCeEEEECCCCCCHHHH-HHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECce
Confidence 588887433 455555443 356666544444544 34567888877766789999 999985 6999999999
Q ss_pred cccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHH-cCCccCCchhhhhhccccccccCCeEEe
Q psy7383 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVR-EGKKFTGPEQLREAASGCARIRGDTLGI 180 (501)
Q Consensus 102 G~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~-~g~w~~~~~~~~~~~~g~~~L~gktVGI 180 (501)
|+|+||+++|+++||.|+|+||+++++||||++++||++.|++..+++.++ +|+|.+... ...++|+|+||||
T Consensus 80 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~------~~~~~l~gktvgI 153 (343)
T 2yq5_A 80 GFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSN------LISNEIYNLTVGL 153 (343)
T ss_dssp CCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGG------GCBCCGGGSEEEE
T ss_pred eecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccC------CCccccCCCeEEE
Confidence 999999999999999999999999999999999999999999999999999 888743211 1246899999999
Q ss_pred eccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCc
Q psy7383 181 VGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA 260 (501)
Q Consensus 181 VGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gA 260 (501)
||+|.||+.+|++|++|||+|++||++..... ..++... ++++++++||+|++|||+|++|+++|+++.|++||+|+
T Consensus 154 iGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--~~~~~~~-~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga 230 (343)
T 2yq5_A 154 IGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEF--EPFLTYT-DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSA 230 (343)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSCCGGG--TTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTC
T ss_pred EecCHHHHHHHHHHhhCCCEEEEECCChhhhh--hcccccc-CHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCc
Confidence 99999999999999999999999999875422 2234444 89999999999999999999999999999999999999
Q ss_pred EEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCC--CCCCC-----------CCCCCCCCeEEecCCCCCcHHHHHH
Q psy7383 261 FLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP--YNVFQ-----------GNLKDAPNILCTPHAAFYSEASCTE 327 (501)
Q Consensus 261 ilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EP--l~~~~-----------~pL~~~pNVilTPHiAg~T~ea~~~ 327 (501)
+|||++||++||+++|+++|++|+|.||+||||++|| ++. + +|||++|||++|||+||+|.++.++
T Consensus 231 ilIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~-~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~ 309 (343)
T 2yq5_A 231 YLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGH-TGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRN 309 (343)
T ss_dssp EEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTC-CSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHH
T ss_pred EEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCcccc-ccccccccccchhHHhcCCCEEECCccccchHHHHHH
Confidence 9999999999999999999999999999999999999 443 3 4899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccccccc
Q psy7383 328 LREMAASEIRRAIVGRIPDCLRNCVNKE 355 (501)
Q Consensus 328 ~~~~~~~ni~~~l~G~~p~~l~N~Vn~e 355 (501)
+.+++++||.+|++|+.+ .|+||+-
T Consensus 310 ~~~~~~~ni~~~l~g~~~---~~~v~~~ 334 (343)
T 2yq5_A 310 MVQICLTDQLTIAKGGRP---RSIVNLT 334 (343)
T ss_dssp HHHHHHHHHHHHHTTCCC---TTBC---
T ss_pred HHHHHHHHHHHHHcCCCC---CceECCc
Confidence 999999999999999865 4677754
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-63 Score=509.31 Aligned_cols=276 Identities=24% Similarity=0.271 Sum_probs=245.0
Q ss_pred hccceEEEEeccCCCCHHHH-hcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHH
Q psy7383 68 LNEAVGALMWHTIILTKEDL-EKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYW 146 (501)
Q Consensus 68 l~~a~~vli~~~~~l~~e~l-~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~ 146 (501)
+.++++++.|.. .+ +++| +++|+||||++.++|+|+||+++|+++||.|+|++|+++.+||||++++||+++|++..
T Consensus 38 ~~~ad~l~~~~~-~~-~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~ 115 (324)
T 3evt_A 38 YDQIEVMYGNHP-LL-KTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHA 115 (324)
T ss_dssp GGGEEEEESCCT-HH-HHHHHSTTCCCCEEECSSSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hCCcEEEEECCc-Ch-HHHHHhhCCCceEEEECCccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhH
Confidence 356777666653 46 8899 78999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHH
Q psy7383 147 L-ANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQ 225 (501)
Q Consensus 147 ~-~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLd 225 (501)
+ ++.++++.|.... ..++|+||||||||+|.||+.+|++|++|||+|++||++......... .....+++
T Consensus 116 ~~~~~~~~~~W~~~~--------~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-~~~~~~l~ 186 (324)
T 3evt_A 116 AWLNQRGARQWALPM--------TTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE-TVAFTATA 186 (324)
T ss_dssp HHHHHTTTCCSSCSS--------CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE-EEEGGGCH
T ss_pred HHHHHHhcCCcccCC--------CCccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh-ccccCCHH
Confidence 9 9999999986421 136799999999999999999999999999999999987643211111 12345899
Q ss_pred HHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCC
Q psy7383 226 DLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNL 305 (501)
Q Consensus 226 elL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL 305 (501)
+++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||+++|+++|++|+|.||+||||++||++. ++||
T Consensus 187 ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~-~~pL 265 (324)
T 3evt_A 187 DALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPT-DHPL 265 (324)
T ss_dssp HHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCT-TCGG
T ss_pred HHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCC-CChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred CCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccccc
Q psy7383 306 KDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYF 357 (501)
Q Consensus 306 ~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e~~ 357 (501)
|++|||++|||+|++|.++.+++.+++++||++|++|+.+ +.|+||++..
T Consensus 266 ~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~--~~n~V~~~~~ 315 (324)
T 3evt_A 266 WQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTL--VRNQVDLNRG 315 (324)
T ss_dssp GGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCC--CSCBCC----
T ss_pred hcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCC--CCceECcccc
Confidence 9999999999999999999999999999999999987643 5799998753
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-62 Score=505.71 Aligned_cols=325 Identities=24% Similarity=0.292 Sum_probs=273.1
Q ss_pred CCEEEEecCCCCCccccccccc-ceEEEcCCC--ChHHHHHHhhccceEEEEecc--CCCCHHHHhcCCCCcEEEEcCcc
Q psy7383 28 RPLVALLDGRDCSIEMPILKDV-ATVAFCDAQ--STSEIHEKVLNEAVGALMWHT--IILTKEDLEKFKTLRIIVRIGSG 102 (501)
Q Consensus 28 kp~IvvLd~~~~~~e~~~L~~~-~~v~~~~~~--~~~ei~~~~l~~a~~vli~~~--~~l~~e~l~~~p~LK~I~~~gaG 102 (501)
+|+|++.|.... .-.+.|++. .++.+.+.. +.+++.+. +.++++++++.. ..+++++|+++|+||||++.++|
T Consensus 17 ~~~vl~~d~~~~-~~~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G 94 (364)
T 2j6i_A 17 EEKLYGCTENKL-GIANWLKDQGHELITTSDKEGGNSVLDQH-IPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVG 94 (364)
T ss_dssp CTTCTTBTTTGG-GCHHHHHHTTCEEEEESCCSSTTSHHHHH-GGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSSC
T ss_pred CceEEEecCccH-HHHHHHHhCCCEEEEcCCCCCCHHHHHHH-hhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCcc
Confidence 344444444321 222334443 356555432 23555544 467777665432 35899999999999999999999
Q ss_pred ccccchhhhhhc--CeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEe
Q psy7383 103 VDNIDVKAAGEL--GIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGI 180 (501)
Q Consensus 103 ~D~ID~~aa~~~--GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGI 180 (501)
+|+||+++|+++ ||.|+|++|+++.+||||++++||++.|++..+++.++++.|.... ......+|+|+||||
T Consensus 95 ~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~-----~~~~~~~l~g~tvgI 169 (364)
T 2j6i_A 95 SDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAA-----IAKDAYDIEGKTIAT 169 (364)
T ss_dssp CTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH-----HHTTCCCSTTCEEEE
T ss_pred cccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCc-----ccCCcccCCCCEEEE
Confidence 999999999999 9999999999999999999999999999999999999999985210 011235799999999
Q ss_pred eccchHHHHHHHHHHhCCCE-EEEECCCCC-chhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCC
Q psy7383 181 VGLGRIGSAVALRAKAFGFN-VIFYDPYLP-DGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258 (501)
Q Consensus 181 VGlG~IG~~iA~~L~afG~~-Vi~~dr~~~-~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~ 258 (501)
||+|+||+.+|++|++|||+ |++||++.. .......|+..+.++++++++||+|++|+|+|++|+++|+++.|+.||+
T Consensus 170 IG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ 249 (364)
T 2j6i_A 170 IGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 249 (364)
T ss_dssp ECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCT
T ss_pred ECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCC
Confidence 99999999999999999997 999998763 3344556777666899999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCC--C---CeEEecCCCCCcHHHHHHHHHHHH
Q psy7383 259 GAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDA--P---NILCTPHAAFYSEASCTELREMAA 333 (501)
Q Consensus 259 gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~--p---NVilTPHiAg~T~ea~~~~~~~~~ 333 (501)
+++|||++||.++|+++|+++|++|+|+||+||||++||++. +||||.+ | ||++|||+|++|.++..++.++++
T Consensus 250 ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~-~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~ 328 (364)
T 2j6i_A 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPK-DHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTV 328 (364)
T ss_dssp TEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCT-TCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHH
T ss_pred CCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCC-CChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986 8999999 9 999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcccccccc-ccCC
Q psy7383 334 SEIRRAIVGRIPDCLRNCVNKEY-FPSA 360 (501)
Q Consensus 334 ~ni~~~l~G~~p~~l~N~Vn~e~-~~~~ 360 (501)
+||++|++|+.|..+.|+||++. |.++
T Consensus 329 ~nl~~~~~g~~~~~~~n~v~~~~~y~~~ 356 (364)
T 2j6i_A 329 NILESFFTGKFDYRPQDIILLNGEYGTK 356 (364)
T ss_dssp HHHHHHHTTCCCCCGGGEEEBTTBC---
T ss_pred HHHHHHHcCCCCCCCCceecCCcCcchh
Confidence 99999999997778899998765 5543
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-61 Score=498.03 Aligned_cols=305 Identities=30% Similarity=0.432 Sum_probs=263.3
Q ss_pred CEEEEecCCCCCccccccccc-ceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccc
Q psy7383 29 PLVALLDGRDCSIEMPILKDV-ATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNID 107 (501)
Q Consensus 29 p~IvvLd~~~~~~e~~~L~~~-~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID 107 (501)
++|++.+... +...+.|++. .++.+....+.+++.+. +.++++++++....+++++|+++|+||||++.++|+|+||
T Consensus 27 ~~vli~~~~~-~~~~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 104 (335)
T 2g76_A 27 RKVLISDSLD-PCCRKILQDGGLQVVEKQNLSKEELIAE-LQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVD 104 (335)
T ss_dssp CEEEECSCCC-HHHHHHHHHHTCEEEECCSCCHHHHHHH-GGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSSSCTTBC
T ss_pred eEEEEcCCCC-HHHHHHHHhCCCEEEECCCCCHHHHHHH-hcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCCCcchhC
Confidence 4677665532 2223445443 35555554556676654 4678888877766799999999999999999999999999
Q ss_pred hhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHH
Q psy7383 108 VKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIG 187 (501)
Q Consensus 108 ~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG 187 (501)
+++|+++||.|+|+||+++.+||||++++||++.|++..+++.++++.|.... ....+|+|+||||||+|.||
T Consensus 105 ~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~-------~~~~~l~g~tvgIIGlG~IG 177 (335)
T 2g76_A 105 LEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKK-------FMGTELNGKTLGILGLGRIG 177 (335)
T ss_dssp HHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGG-------GCBCCCTTCEEEEECCSHHH
T ss_pred hHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccC-------CCCcCCCcCEEEEEeECHHH
Confidence 99999999999999999999999999999999999999999999999985311 11357999999999999999
Q ss_pred HHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 188 SAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 188 ~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+.+|++|++|||+|++||++.........|++. .++++++++||+|++|+|++++|+++|+++.|+.||+|++|||++|
T Consensus 178 ~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~ar 256 (335)
T 2g76_A 178 REVATRMQSFGMKTIGYDPIISPEVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCAR 256 (335)
T ss_dssp HHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSC
T ss_pred HHHHHHHHHCCCEEEEECCCcchhhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence 999999999999999999987654445667765 4899999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q psy7383 268 GGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIP 345 (501)
Q Consensus 268 G~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p 345 (501)
|.++|+++|+++|++|+|+||+||||+.||. . ++|||+++|||+|||++++|.++.+++.+++++||.+|++|+.+
T Consensus 257 g~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~-~-~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~ 332 (335)
T 2g76_A 257 GGIVDEGALLRALQSGQCAGAALDVFTEEPP-R-DRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSL 332 (335)
T ss_dssp TTSBCHHHHHHHHHHTSEEEEEESCCSSSSC-S-CCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccccCHHHHHHHHHhCCccEEEEeecCCCCC-C-CchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999995 3 69999999999999999999999999999999999999999854
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=497.69 Aligned_cols=290 Identities=29% Similarity=0.411 Sum_probs=254.3
Q ss_pred eEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCC--CcEEEEcCccccccchhhhhhcCeEEeecCCCCchh
Q psy7383 51 TVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKT--LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEE 128 (501)
Q Consensus 51 ~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~--LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~a 128 (501)
++.+.+....+++.+ .+.++++++++....+++++|+++|+ ||||++.++|+|+||+++|+++||.|+|+||+++++
T Consensus 28 ~v~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~ 106 (333)
T 1j4a_A 28 EVEYTDKLLTPETVA-LAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNA 106 (333)
T ss_dssp EEEECSSCCCTTTGG-GGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCSCHHH
T ss_pred EEEECCCCCcHHHHH-HhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCcccccccHHHHHhCCCEEEeCCCCCchH
Confidence 555554433344443 34678888877667899999999988 999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 129 VAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
||||++++||++.|++..+++.+++|.|.+.. ....+++|+||||||+|.||+.+|++|++|||+|++||++.
T Consensus 107 vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~-------~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~ 179 (333)
T 1j4a_A 107 IAEHAAIQAARILRQDKAMDEKVARHDLRWAP-------TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR 179 (333)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTT-------CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHcCCCccCC-------cccccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence 99999999999999999999999999984211 11357999999999999999999999999999999999987
Q ss_pred CchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEE
Q psy7383 209 PDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAA 288 (501)
Q Consensus 209 ~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GA 288 (501)
.... .. .+..+.++++++++||+|++|+|++++|+++|+++.|+.||++++|||++||+++|+++|+++|++|+|+||
T Consensus 180 ~~~~-~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA 257 (333)
T 1j4a_A 180 NPEL-EK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGY 257 (333)
T ss_dssp CHHH-HH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred chhH-Hh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEE
Confidence 6442 22 244444899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCC--CCCCCC-----------CCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccc
Q psy7383 289 ALDVHESEP--YNVFQG-----------NLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNK 354 (501)
Q Consensus 289 aLDVfe~EP--l~~~~~-----------pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~ 354 (501)
+||||++|| ++. +| |||++|||++|||+|++|.++.+++.+++++||.+|++|+.+ .|+||.
T Consensus 258 ~LDV~~~EP~~l~~-~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~---~~~v~~ 332 (333)
T 1j4a_A 258 AMDVYEGEVGIFNE-DWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEA---ETPVKV 332 (333)
T ss_dssp EESCCTTCTTTTTS-BCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCC---SSBCCC
T ss_pred EEecCCCCCCcccc-ccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCC---CccccC
Confidence 999999999 343 33 599999999999999999999999999999999999999854 567763
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-60 Score=484.73 Aligned_cols=303 Identities=32% Similarity=0.472 Sum_probs=263.0
Q ss_pred CEEEEecCCCCCccccccccc-ceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccc
Q psy7383 29 PLVALLDGRDCSIEMPILKDV-ATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNID 107 (501)
Q Consensus 29 p~IvvLd~~~~~~e~~~L~~~-~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID 107 (501)
++|++++... ....+.|++. .++.+....+.+++.+. +.++++++++....+++++|+++|+||||++.++|+|+||
T Consensus 4 ~~il~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 81 (307)
T 1wwk_A 4 MKVLVAAPLH-EKAIQVLKDAGLEVIYEEYPDEDRLVEL-VKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNID 81 (307)
T ss_dssp CEEEECSCCC-HHHHHHHHHTTCEEEECSSCCHHHHHHH-STTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCCTTBC
T ss_pred eEEEEeCCCC-HHHHHHHHhCCeEEEeCCCCCHHHHHHH-hcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCccccccC
Confidence 4577766432 2223444442 34444333455666544 4677877766555699999999999999999999999999
Q ss_pred hhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHH
Q psy7383 108 VKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIG 187 (501)
Q Consensus 108 ~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG 187 (501)
+++|+++||.|+|++|+++++||||++++||++.|++..+++.++++.|.... ....+|.|+||||||+|.||
T Consensus 82 ~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-------~~~~~l~g~~vgIiG~G~IG 154 (307)
T 1wwk_A 82 VEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKE-------AMGIELEGKTIGIIGFGRIG 154 (307)
T ss_dssp HHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTT-------CCBCCCTTCEEEEECCSHHH
T ss_pred HHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccC-------cCCcccCCceEEEEccCHHH
Confidence 99999999999999999999999999999999999999999999999985311 11257999999999999999
Q ss_pred HHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 188 SAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 188 ~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+.+|++|++|||+|++||++.........|+... ++++++++||+|++|+|++++|+++|+++.|+.||+|++|||++|
T Consensus 155 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~ar 233 (307)
T 1wwk_A 155 YQVAKIANALGMNILLYDPYPNEERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSR 233 (307)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred HHHHHHHHHCCCEEEEECCCCChhhHhhcCcccc-CHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCC
Confidence 9999999999999999999876544456677654 899999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhC
Q psy7383 268 GGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVG 342 (501)
Q Consensus 268 G~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G 342 (501)
|.++|+++|+++|++|+|.||+||||+.||++. ++|||+++||++|||++++|.++..++.+++++||.+|++|
T Consensus 234 g~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~-~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g 307 (307)
T 1wwk_A 234 GPVVDTNALVKALKEGWIAGAGLDVFEEEPLPK-DHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG 307 (307)
T ss_dssp GGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCT-TCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHhCCCcEEEEecCCCCCCCC-CChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999976 79999999999999999999999999999999999999976
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-61 Score=493.02 Aligned_cols=291 Identities=27% Similarity=0.404 Sum_probs=253.5
Q ss_pred eEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCC--CcEEEEcCccccccchhhhhhcCeEEeecCCCCchh
Q psy7383 51 TVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKT--LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEE 128 (501)
Q Consensus 51 ~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~--LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~a 128 (501)
++.+.+....+++.+ .+.++++++++....+++++|+++|+ ||||++.++|+|+||+++|+++||.|+|+||+++++
T Consensus 26 ~v~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~ 104 (333)
T 1dxy_A 26 TLEYHTEFLDENTVE-WAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAA 104 (333)
T ss_dssp EEEECSSCCCTTGGG-GGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSCHHH
T ss_pred EEEEcCCCChHHHHH-HhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcccCccCHHHHHhCCCEEEeCCCCCchH
Confidence 455554433344433 34678888877667899999999988 999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHcCCccC-CchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCC
Q psy7383 129 VADTTLCLILNLYRRTYWLANMVREGKKFT-GPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 129 VAE~alal~L~l~R~~~~~~~~~~~g~w~~-~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
||||++++||++.|++..+++.+++|.|.+ .. ....+|+|+||||||+|.||+.+|++|++|||+|++||++
T Consensus 105 vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~-------~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~ 177 (333)
T 1dxy_A 105 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT-------FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPY 177 (333)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTC-------CCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHcCCcccccC-------CCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence 999999999999999999999999999831 11 1135799999999999999999999999999999999998
Q ss_pred CCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceE
Q psy7383 208 LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRA 287 (501)
Q Consensus 208 ~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~G 287 (501)
..... .. .+.. .++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||++||+++|+++|+++|++|+|+|
T Consensus 178 ~~~~~-~~-~~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~g 254 (333)
T 1dxy_A 178 PMKGD-HP-DFDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAG 254 (333)
T ss_dssp CCSSC-CT-TCEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEE
T ss_pred cchhh-Hh-cccc-CCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccE
Confidence 75432 22 2443 489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCC--C-------CCC---CCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q psy7383 288 AALDVHESEPY--N-------VFQ---GNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355 (501)
Q Consensus 288 AaLDVfe~EPl--~-------~~~---~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e 355 (501)
|+||||++||+ + ..+ +|||++|||++|||+|++|.++..++.+++++||.+|++|+.+ .|+||+.
T Consensus 255 A~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~---~~~v~~~ 331 (333)
T 1dxy_A 255 VGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGET---STEVTGP 331 (333)
T ss_dssp EEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHHSCC---TTEECC-
T ss_pred EEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHHHcCCCC---CceeCCC
Confidence 99999999993 1 101 5799999999999999999999999999999999999999854 5777764
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-60 Score=489.04 Aligned_cols=290 Identities=26% Similarity=0.379 Sum_probs=253.0
Q ss_pred eEEEcCCC-ChHHHHHHhhccceEEEEeccCCCCHHHHhcCCC--CcEEEEcCccccccchhhhhhcCeEEeecCCCCch
Q psy7383 51 TVAFCDAQ-STSEIHEKVLNEAVGALMWHTIILTKEDLEKFKT--LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVE 127 (501)
Q Consensus 51 ~v~~~~~~-~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~--LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~ 127 (501)
++.+.+.. +.+++.+ .+.++++++++....+++++|+++|+ ||||++.++|+|+||+++|+++||.|+|+||+++.
T Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~ 104 (331)
T 1xdw_A 26 DIKCVPDYLNTKETAE-MAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPN 104 (331)
T ss_dssp EEEECSCCSCSHHHHH-TTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSSCCTTBCHHHHHHTTCCEECCCCCCHH
T ss_pred EEEECCCCCCHHHHHH-HhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEccccccccCHHHHHhCCcEEEeCCCCCcH
Confidence 45554433 3355554 44678888877667899999999998 99999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCC
Q psy7383 128 EVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 128 aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
+||||++++||++.|++..+++.+++|.|.+... ....+|.|+||||||+|.||+.+|++|++|||+|++||++
T Consensus 105 ~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~------~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~ 178 (331)
T 1xdw_A 105 AIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAF------MFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVF 178 (331)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCST------TCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccC------cCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence 9999999999999999999999999999842110 1135799999999999999999999999999999999998
Q ss_pred CCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceE
Q psy7383 208 LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRA 287 (501)
Q Consensus 208 ~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~G 287 (501)
..... .. .+. ..++++++++||+|++|||+|++|+++|+++.|+.||+|++|||++||+++|+++|+++|++|+|+|
T Consensus 179 ~~~~~-~~-~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~g 255 (331)
T 1xdw_A 179 EIKGI-ED-YCT-QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGG 255 (331)
T ss_dssp CCCSC-TT-TCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEE
T ss_pred ccHHH-Hh-ccc-cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceE
Confidence 75432 22 244 3489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCC--CC------CCC----CCCCC-CCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q psy7383 288 AALDVHESEPY--NV------FQG----NLKDA-PNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVN 353 (501)
Q Consensus 288 AaLDVfe~EPl--~~------~~~----pL~~~-pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn 353 (501)
|+||||++||+ +. .++ |||++ |||++|||+|++|.++..++.+++++||.+|++|+.+ .|+||
T Consensus 256 A~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~---~~~v~ 331 (331)
T 1xdw_A 256 YGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDC---PNKIK 331 (331)
T ss_dssp EEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHSCC---TTBCC
T ss_pred EEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHcCCCC---CCCCC
Confidence 99999999995 22 123 79999 9999999999999999999999999999999999854 46665
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-59 Score=483.39 Aligned_cols=310 Identities=25% Similarity=0.315 Sum_probs=267.0
Q ss_pred CCEEEEecCCCCCcccccccccceEEEcC-CCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccccc
Q psy7383 28 RPLVALLDGRDCSIEMPILKDVATVAFCD-AQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNI 106 (501)
Q Consensus 28 kp~IvvLd~~~~~~e~~~L~~~~~v~~~~-~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~I 106 (501)
|++|++.+... +..++.|++..++.+.. ..+.+++..+.+.++++++++....+++++|+++|+||||++.++|+|+|
T Consensus 23 ~~~vl~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~i 101 (333)
T 3ba1_A 23 AIGVLMMCPMS-TYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLDKV 101 (333)
T ss_dssp CCEEEECSCCC-HHHHHHHHHHSEEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESSSCCTTB
T ss_pred CCEEEEeCCCC-HHHHHHHHhcCCEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEcCcccccc
Confidence 67787776532 22334555545555543 23445545555577887666555679999999999999999999999999
Q ss_pred chhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchH
Q psy7383 107 DVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRI 186 (501)
Q Consensus 107 D~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~I 186 (501)
|+++|+++||.|+|+||+++++||||++++||+++|++..+++.++++.|.... .....+|+|++|||||+|.|
T Consensus 102 d~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~------~~~~~~l~g~~vgIIG~G~i 175 (333)
T 3ba1_A 102 DLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGD------FKLTTKFSGKRVGIIGLGRI 175 (333)
T ss_dssp CHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCC------CCCCCCCTTCCEEEECCSHH
T ss_pred CHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccc------cccccccCCCEEEEECCCHH
Confidence 999999999999999999999999999999999999999999999999985311 01135799999999999999
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
|+.+|++|++|||+|++||++.... .++....++++++++||+|++|+|++++|+++|+++.|+.||++++|||++
T Consensus 176 G~~vA~~l~~~G~~V~~~dr~~~~~----~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~s 251 (333)
T 3ba1_A 176 GLAVAERAEAFDCPISYFSRSKKPN----TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIG 251 (333)
T ss_dssp HHHHHHHHHTTTCCEEEECSSCCTT----CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECS
T ss_pred HHHHHHHHHHCCCEEEEECCCchhc----cCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECC
Confidence 9999999999999999999876432 255555689999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy7383 267 RGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPD 346 (501)
Q Consensus 267 RG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~ 346 (501)
||.++|+++|+++|++|+|+||+||||+.||++ ++|||+++||++|||++++|.++..++.+++++||.+|++|+.+
T Consensus 252 rG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~--~~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~- 328 (333)
T 3ba1_A 252 RGPHVDEPELVSALVEGRLGGAGLDVFEREPEV--PEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL- 328 (333)
T ss_dssp CGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCC--CGGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred CCchhCHHHHHHHHHcCCCeEEEEecCCCCCCC--cchhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence 999999999999999999999999999999986 48999999999999999999999999999999999999999854
Q ss_pred CCccccc
Q psy7383 347 CLRNCVN 353 (501)
Q Consensus 347 ~l~N~Vn 353 (501)
.|+||
T Consensus 329 --~~~Vn 333 (333)
T 3ba1_A 329 --LTPVV 333 (333)
T ss_dssp --SSBCC
T ss_pred --CCCCC
Confidence 46665
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-59 Score=477.18 Aligned_cols=308 Identities=27% Similarity=0.323 Sum_probs=264.7
Q ss_pred EEEEecCCCCCcccccccccceEEEcCC---CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCC-CcEEEEcCccccc
Q psy7383 30 LVALLDGRDCSIEMPILKDVATVAFCDA---QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKT-LRIIVRIGSGVDN 105 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~~~v~~~~~---~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~-LK~I~~~gaG~D~ 105 (501)
+|++.+.. ....++.|++..++.+... .+.+++.+. +.++++++++....+++++|+++|+ ||||++.++|+|+
T Consensus 3 ~vl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~ 80 (320)
T 1gdh_A 3 KILITWPL-PEAAMARARESYDVIAHGDDPKITIDEMIET-AKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDH 80 (320)
T ss_dssp EEEESSCC-CHHHHHHHHTTSEEEECCSTTCCCHHHHHHH-HTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTT
T ss_pred EEEEcCCC-CHHHHHHHHhcCCEEEecCCCCCCHHHHHHH-hcCCEEEEECCCCCCCHHHHHhCCccceEEEECCccccc
Confidence 45554432 2223455655455555432 244566544 4678887777656899999999999 9999999999999
Q ss_pred cchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccch
Q psy7383 106 IDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGR 185 (501)
Q Consensus 106 ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~ 185 (501)
||+++|+++||.|+|+||+++++||||++++||++.|++..+++.++++.|..... ......++.|+||||||+|+
T Consensus 81 id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~----~~~~~~~l~g~~vgIIG~G~ 156 (320)
T 1gdh_A 81 IDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEP----LELVGEKLDNKTLGIYGFGS 156 (320)
T ss_dssp BCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCT----TTTCBCCCTTCEEEEECCSH
T ss_pred ccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCcccc----ccccCcCCCCCEEEEECcCH
Confidence 99999999999999999999999999999999999999999999999999942100 01113579999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEECC-CCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEE
Q psy7383 186 IGSAVALRAKAFGFNVIFYDP-YLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264 (501)
Q Consensus 186 IG~~iA~~L~afG~~Vi~~dr-~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilIN 264 (501)
||+.+|++|++|||+|++||+ +.........|+..+.++++++++||+|++|+|++++|+++|+++.|+.||+|++|||
T Consensus 157 IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn 236 (320)
T 1gdh_A 157 IGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVN 236 (320)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEE
Confidence 999999999999999999999 7665444456777655899999999999999999999999999999999999999999
Q ss_pred cCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy7383 265 TARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRI 344 (501)
Q Consensus 265 vaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~ 344 (501)
++||.++|+++|.++|++|+|.||+||||+.|| +. ++|||+++|||+|||++++|.++..++.+++ +||.+|++|+.
T Consensus 237 ~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~-~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~ 313 (320)
T 1gdh_A 237 TARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NI-NEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGA 313 (320)
T ss_dssp CSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SC-CTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTS
T ss_pred CCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC-CC-CChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCC
Confidence 999999999999999999999999999999999 54 7999999999999999999999999999999 99999999986
Q ss_pred CC
Q psy7383 345 PD 346 (501)
Q Consensus 345 p~ 346 (501)
+.
T Consensus 314 ~~ 315 (320)
T 1gdh_A 314 DM 315 (320)
T ss_dssp CC
T ss_pred Cc
Confidence 53
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-59 Score=473.47 Aligned_cols=303 Identities=33% Similarity=0.437 Sum_probs=260.9
Q ss_pred EEEEecCCCCCccccccccc-ceEEEcCC--CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccccc
Q psy7383 30 LVALLDGRDCSIEMPILKDV-ATVAFCDA--QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNI 106 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~-~~v~~~~~--~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~I 106 (501)
+|++.+... ...++.|++. .++.+... .+.+++.+. +.++++++++....+++++|+++|+||||++.++|+|+|
T Consensus 2 ~vl~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 79 (311)
T 2cuk_A 2 RVLVTRTLP-GKALDRLRERGLEVEVHRGLFLPKAELLKR-VEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHV 79 (311)
T ss_dssp EEEESSCCS-SSTTHHHHHTTCEEEECCSSCCCHHHHHHH-HTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCCTTB
T ss_pred EEEEeCCCC-HHHHHHHHhcCCeEEEecCCCCCHHHHHHH-hcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCcccc
Confidence 455544322 2334566655 46655432 245566544 467887776665679999999999999999999999999
Q ss_pred chhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchH
Q psy7383 107 DVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRI 186 (501)
Q Consensus 107 D~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~I 186 (501)
|+++|+++||.|+|++|+++++||||++++||+++|++..+++.+++|.|..... ......++.|+||||||+|.|
T Consensus 80 d~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~----~~~~~~~l~g~~vgIIG~G~I 155 (311)
T 2cuk_A 80 DLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHP----ELLLGLDLQGLTLGLVGMGRI 155 (311)
T ss_dssp CHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCT----TTTCBCCCTTCEEEEECCSHH
T ss_pred CHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCcccc----ccccCcCCCCCEEEEEEECHH
Confidence 9999999999999999999999999999999999999999999999999942110 001135799999999999999
Q ss_pred HHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 187 GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 187 G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
|+.+|++|++|||+|++||++..... +. ..++++++++||+|++|+|++++|+++|+++.|+.||++++|||++
T Consensus 156 G~~~A~~l~~~G~~V~~~d~~~~~~~-----~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~s 229 (311)
T 2cuk_A 156 GQAVAKRALAFGMRVVYHARTPKPLP-----YP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTA 229 (311)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCCSSS-----SC-BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred HHHHHHHHHHCCCEEEEECCCCcccc-----cc-cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECC
Confidence 99999999999999999999865432 22 4589999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy7383 267 RGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPD 346 (501)
Q Consensus 267 RG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~ 346 (501)
||.++|+++|+++|+ |+|.||+||||+.||++. ++|||+++||++|||++++|.++..++.+++++||.+|++|+.+.
T Consensus 230 rg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~-~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~~ 307 (311)
T 2cuk_A 230 RGALVDTEALVEALR-GHLFGAGLDVTDPEPLPP-GHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPP 307 (311)
T ss_dssp CGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCT-TSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCC-CChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999 999999999999999876 799999999999999999999999999999999999999998553
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-60 Score=483.19 Aligned_cols=264 Identities=24% Similarity=0.323 Sum_probs=237.1
Q ss_pred ccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccccc-c-hhh---hhhcCeEEeecCCCC-chhhHHHHHHHHHHHHh
Q psy7383 69 NEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNI-D-VKA---AGELGIAVCNVPGYG-VEEVADTTLCLILNLYR 142 (501)
Q Consensus 69 ~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~I-D-~~a---a~~~GI~Vtn~pg~~-a~aVAE~alal~L~l~R 142 (501)
.++|++++|. +++++|++ |+||||++.++|+|+| | +++ +.++||.|+|+++++ +.+||||++++||++.|
T Consensus 40 ~~ad~~i~~~---~~~~~l~~-~~Lk~I~~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R 115 (315)
T 3pp8_A 40 NPADYALVWQ---PPVEMLAG-RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFR 115 (315)
T ss_dssp SCCSEEEESS---CCHHHHTT-CCCSEEEESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHT
T ss_pred cCcEEEEECC---CCHHHhCC-CCceEEEECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHh
Confidence 4678777775 48999999 9999999999999999 7 887 788999999998875 79999999999999999
Q ss_pred hHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCcee--
Q psy7383 143 RTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTR-- 220 (501)
Q Consensus 143 ~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~-- 220 (501)
++..+++.++++.|... ..++|+|+||||||+|.||+.+|++|++|||+|++||++..... ++..
T Consensus 116 ~~~~~~~~~~~g~W~~~---------~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~----~~~~~~ 182 (315)
T 3pp8_A 116 RFDDYQALKNQALWKPL---------PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP----GVESYV 182 (315)
T ss_dssp THHHHHHHHHTTCCCCC---------CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCT----TCEEEE
T ss_pred CChHHHHHHHhcccCCC---------CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhh----hhhhhc
Confidence 99999999999998642 13579999999999999999999999999999999998764311 1221
Q ss_pred -cCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCC
Q psy7383 221 -VYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYN 299 (501)
Q Consensus 221 -~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~ 299 (501)
..++++++++||+|++|||+|++|+++|+++.|++||+|++|||++||++||+++|+++|++|+|.||+||||++||++
T Consensus 183 ~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~ 262 (315)
T 3pp8_A 183 GREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLP 262 (315)
T ss_dssp SHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCC
T ss_pred ccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCC
Confidence 2479999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q psy7383 300 VFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVNKE 355 (501)
Q Consensus 300 ~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e 355 (501)
. +||||++|||++|||+|++|.+ +++.+++++||++|++|+. +.|+||++
T Consensus 263 ~-~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G~~---~~~~V~~~ 312 (315)
T 3pp8_A 263 Q-ESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGEP---VTGQVDRA 312 (315)
T ss_dssp T-TCGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHTCC---CCCBCCCC
T ss_pred C-CChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcCCC---CCceECcc
Confidence 7 8999999999999999999985 5899999999999999985 46889876
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-59 Score=474.41 Aligned_cols=301 Identities=27% Similarity=0.374 Sum_probs=261.9
Q ss_pred EEEEecCCCCCccccccccc-ceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccch
Q psy7383 30 LVALLDGRDCSIEMPILKDV-ATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDV 108 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~-~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~ 108 (501)
+|++++... ....+.|++. .++.+....+.+++.+. +.++++++++....+++++++++|+||||++.++|+|+||+
T Consensus 7 kil~~~~~~-~~~~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~ 84 (313)
T 2ekl_A 7 KALITDPID-EILIKTLREKGIQVDYMPEISKEELLNI-IGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDT 84 (313)
T ss_dssp EEEECSCCC-HHHHHHHHHTTCEEEECTTCCHHHHHHH-GGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCTTBCH
T ss_pred EEEEECCCC-HHHHHHHHhCCcEEEeCCCCCHHHHHHH-hcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCCccCH
Confidence 466665432 2223445443 34444333345666544 46778777654457899999999999999999999999999
Q ss_pred hhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHH
Q psy7383 109 KAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGS 188 (501)
Q Consensus 109 ~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~ 188 (501)
++|+++||.|+|+||+++++||||++++||++.|++..+++.+++|.|... ...++.|+||||||+|+||+
T Consensus 85 ~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~---------~~~~l~g~~vgIIG~G~IG~ 155 (313)
T 2ekl_A 85 EEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKI---------EGLELAGKTIGIVGFGRIGT 155 (313)
T ss_dssp HHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCC---------CCCCCTTCEEEEESCSHHHH
T ss_pred HHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCC---------CCCCCCCCEEEEEeeCHHHH
Confidence 999999999999999999999999999999999999999999999998411 12579999999999999999
Q ss_pred HHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 189 AVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 189 ~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.+|++|++||++|++||++.........|+.. .++++++++||+|++|+|++++|+++|+++.|+.||+|++|||++||
T Consensus 156 ~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg 234 (313)
T 2ekl_A 156 KVGIIANAMGMKVLAYDILDIREKAEKINAKA-VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234 (313)
T ss_dssp HHHHHHHHTTCEEEEECSSCCHHHHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCG
T ss_pred HHHHHHHHCCCEEEEECCCcchhHHHhcCcee-cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCC
Confidence 99999999999999999987654445567765 48999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCC---CCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy7383 269 GLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQG---NLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRI 344 (501)
Q Consensus 269 ~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~---pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~ 344 (501)
.++|+++|+++|++|+|.||+||||+.||++ ++ |||+++||++|||++++|.++.+++.+++++||.+|++|+.
T Consensus 235 ~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~--~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~ 311 (313)
T 2ekl_A 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPK--EEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELG 311 (313)
T ss_dssp GGBCHHHHHHHHHTTCEEEEEESCCSSSSCC--SHHHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHcCCCcEEEEecCCCCCCC--CcccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999987 46 99999999999999999999999999999999999999973
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-59 Score=478.74 Aligned_cols=325 Identities=28% Similarity=0.419 Sum_probs=275.5
Q ss_pred CCEEEEecC-CCC-CcccccccccceEEEcCCCChHHHHHHhh----ccceEEEEe------ccCCCCHHHHhcCC-CCc
Q psy7383 28 RPLVALLDG-RDC-SIEMPILKDVATVAFCDAQSTSEIHEKVL----NEAVGALMW------HTIILTKEDLEKFK-TLR 94 (501)
Q Consensus 28 kp~IvvLd~-~~~-~~e~~~L~~~~~v~~~~~~~~~ei~~~~l----~~a~~vli~------~~~~l~~e~l~~~p-~LK 94 (501)
+++|++++. ... ...+..|++..++.+.+..+.+++.+.+. .++++++.. ....+++++|+++| +||
T Consensus 3 ~~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~Lk 82 (348)
T 2w2k_A 3 RPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSLK 82 (348)
T ss_dssp CCEEEECSSCCSSCHHHHHHHHHHSEEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTCC
T ss_pred CcEEEEECCccccChHHHHHHHhcceEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCce
Confidence 567888775 321 23345565556776666566777776664 156665542 24579999999998 699
Q ss_pred EEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCC---ccCCchhhhhhccccc
Q psy7383 95 IIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGK---KFTGPEQLREAASGCA 171 (501)
Q Consensus 95 ~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~---w~~~~~~~~~~~~g~~ 171 (501)
||++.++|+|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|. |.... ........
T Consensus 83 ~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~---~~~~~~~~ 159 (348)
T 2w2k_A 83 VFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVH---LEIGKSAH 159 (348)
T ss_dssp EEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHH---HHHHTTCC
T ss_pred EEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccc---ccccccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999 73110 00011135
Q ss_pred cccCCeEEeeccchHHHHHHHHHH-hCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAK-AFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~-afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
+|+|+||||||+|.||+.+|++|+ +|||+|++||++... +.....++..+.++++++++||+|++|+|++++|+++|+
T Consensus 160 ~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~ 239 (348)
T 2w2k_A 160 NPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLID 239 (348)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBC
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhh
Confidence 799999999999999999999999 999999999998643 333445776656899999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~ 329 (501)
++.++.||++++|||++||.++|+++|.++|++++|.||++|||+.|| .. +++||+++|||+|||++++|.++..++.
T Consensus 240 ~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~-~~~L~~~~nviltPH~~~~t~e~~~~~~ 317 (348)
T 2w2k_A 240 EAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QV-SKELIEMKHVTLTTHIGGVAIETFHEFE 317 (348)
T ss_dssp HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SC-CHHHHTSSSEEECCSCTTCSHHHHHHHH
T ss_pred HHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CC-CchhhcCCCEEEcCcCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 43 6889999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCccccccccccCC
Q psy7383 330 EMAASEIRRAIVGRIPDCLRNCVNKEYFPSA 360 (501)
Q Consensus 330 ~~~~~ni~~~l~G~~p~~l~N~Vn~e~~~~~ 360 (501)
+++++||.+|++|+. +.|+||++.+.++
T Consensus 318 ~~~~~ni~~~~~g~~---~~~~v~~~~~~~~ 345 (348)
T 2w2k_A 318 RLTMTNIDRFLLQGK---PLLTPAGKVFAPS 345 (348)
T ss_dssp HHHHHHHHHHHHTCC---CCSSBCSCCCCCC
T ss_pred HHHHHHHHHHHcCCC---CcceecccccCcc
Confidence 999999999999985 4688998876643
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-58 Score=471.55 Aligned_cols=319 Identities=31% Similarity=0.441 Sum_probs=273.3
Q ss_pred CCEEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccc
Q psy7383 28 RPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNID 107 (501)
Q Consensus 28 kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID 107 (501)
+++|++.+... ...++.|++..++.+.+..+.+++.+. +.++++++++....+++++|+++|+||||++.++|+|+||
T Consensus 2 ~~~il~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 79 (333)
T 2d0i_A 2 RPKVGVLLKMK-REALEELKKYADVEIILYPSGEELKGV-IGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNID 79 (333)
T ss_dssp CSEEEECSCCC-HHHHHHHHTTSEEEECCSCCHHHHHHH-GGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTTBC
T ss_pred CcEEEEECCCC-HHHHHHHHhcCCEEEeCCCCHHHHHHH-hcCCEEEEECCCCCCCHHHHhhCCCceEEEECCccccccc
Confidence 45777765432 223455555556655442345566544 4678877766666799999999999999999999999999
Q ss_pred hhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccc---cccccCCeEEeeccc
Q psy7383 108 VKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASG---CARIRGDTLGIVGLG 184 (501)
Q Consensus 108 ~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g---~~~L~gktVGIVGlG 184 (501)
+++|+++||.|+|++|+++.+||||++++||+++|++..+++.++++.|.. .. ....+ ..+|+|++|||||+|
T Consensus 80 ~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~-~~---~~~~~~~~~~~l~g~~vgIIG~G 155 (333)
T 2d0i_A 80 LEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWES-HA---KIWTGFKRIESLYGKKVGILGMG 155 (333)
T ss_dssp HHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCC-HH---HHHTTSCCCCCSTTCEEEEECCS
T ss_pred HHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCc-Cc---ccccCCcccCCCCcCEEEEEccC
Confidence 999999999999999999999999999999999999999999999999842 10 00111 157999999999999
Q ss_pred hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEE
Q psy7383 185 RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264 (501)
Q Consensus 185 ~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilIN 264 (501)
.||+.+|++|++||++|++||++.........|+... ++++++++||+|++|+|++++|+++|+++.++.||++ +|||
T Consensus 156 ~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin 233 (333)
T 2d0i_A 156 AIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVN 233 (333)
T ss_dssp HHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEE
T ss_pred HHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceec-CHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEE
Confidence 9999999999999999999999876543444566654 8999999999999999999999999999999999999 9999
Q ss_pred cCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCC-CeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCC
Q psy7383 265 TARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAP-NILCTPHAAFYSEASCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 265 vaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~p-NVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~ 343 (501)
++||.++|+++|+++|++++|.||++|||+.||++ ++|||.++ ||++|||++++|.++..++.+++++|+.+|++|+
T Consensus 234 ~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~--~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~ 311 (333)
T 2d0i_A 234 IGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVR--EHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGE 311 (333)
T ss_dssp CSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCS--CCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCC--CchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999976 69999999 9999999999999999999999999999999998
Q ss_pred CCCCCccccccccccC
Q psy7383 344 IPDCLRNCVNKEYFPS 359 (501)
Q Consensus 344 ~p~~l~N~Vn~e~~~~ 359 (501)
.+ .|+||++.+..
T Consensus 312 ~~---~~~v~~~~~~~ 324 (333)
T 2d0i_A 312 VP---EDLVNKEVLEV 324 (333)
T ss_dssp CC---TTBSCTTHHHH
T ss_pred CC---cCccCHHHhhc
Confidence 54 58899886553
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=470.39 Aligned_cols=272 Identities=22% Similarity=0.295 Sum_probs=245.4
Q ss_pred hccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHH
Q psy7383 68 LNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWL 147 (501)
Q Consensus 68 l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~ 147 (501)
+.++++++++. .+.++|+++|+||||++.++|+|+||++++ ++||.|+|++|+++.+||||++++||++.|++..+
T Consensus 29 ~~~~d~~i~~~---~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~ 104 (303)
T 1qp8_A 29 LGNVEAALVSR---ITAEELAKMPRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQY 104 (303)
T ss_dssp CTTBCCCCBSC---CCHHHHHHCTTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hCCCEEEEECC---CCHHHHhhCCCCcEEEECCcCcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHH
Confidence 35566655553 467999999999999999999999999985 79999999999999999999999999999999999
Q ss_pred HHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHH
Q psy7383 148 ANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDL 227 (501)
Q Consensus 148 ~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdel 227 (501)
++.++++.|.... ...+|.|+||||||+|.||+.+|++|++|||+|++||++.. .. +.....+++++
T Consensus 105 ~~~~~~g~w~~~~--------~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~----~~~~~~~l~el 171 (303)
T 1qp8_A 105 GEKMKRGDYGRDV--------EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG----PWRFTNSLEEA 171 (303)
T ss_dssp HHHHHTTCCCCCS--------CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS----SSCCBSCSHHH
T ss_pred HHHHHcCCCCCCC--------CCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc----CcccCCCHHHH
Confidence 9999999995321 12479999999999999999999999999999999998765 11 33345689999
Q ss_pred HhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC-CCCCCCCCCCCCC
Q psy7383 228 LFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH-ESEPYNVFQGNLK 306 (501)
Q Consensus 228 L~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf-e~EPl~~~~~pL~ 306 (501)
+++||+|++|+|++++|+++|+++.|+.||+|++|||++||.++|+++|+++|++|+|.||+|||| ++||++. ++|||
T Consensus 172 l~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~-~~~L~ 250 (303)
T 1qp8_A 172 LREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAK-DAEFF 250 (303)
T ss_dssp HTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGG-GHHHH
T ss_pred HhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCC-CChhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8899986 79999
Q ss_pred CCCCeEEecCCCCC--cHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccccccCC
Q psy7383 307 DAPNILCTPHAAFY--SEASCTELREMAASEIRRAIVGRIPDCLRNCVNKEYFPSA 360 (501)
Q Consensus 307 ~~pNVilTPHiAg~--T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn~e~~~~~ 360 (501)
+++||++|||++++ |.++.+++.+++++||.+|++|+. +.|+||++.|..|
T Consensus 251 ~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~---~~~~v~~~~y~~~ 303 (303)
T 1qp8_A 251 SLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGR---PRNIAKREDYIGS 303 (303)
T ss_dssp TSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSC---CSCBCCGGGTC--
T ss_pred cCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCC---CCceeCHHHcCCC
Confidence 99999999999998 999999999999999999999984 4689999988754
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-58 Score=469.00 Aligned_cols=321 Identities=32% Similarity=0.418 Sum_probs=270.7
Q ss_pred CEEEEecCCCCCcccccccccceEEEcCC---CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccc
Q psy7383 29 PLVALLDGRDCSIEMPILKDVATVAFCDA---QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDN 105 (501)
Q Consensus 29 p~IvvLd~~~~~~e~~~L~~~~~v~~~~~---~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ 105 (501)
++|++.+... ....+.|++..++.+... .+.+++.+. +.++++++++....+++++|+++|+||||++.++|+|+
T Consensus 3 ~~il~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 80 (334)
T 2dbq_A 3 PKVFITREIP-EVGIKMLEDEFEVEVWGDEKEIPREILLKK-VKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDN 80 (334)
T ss_dssp CEEEESSCCC-HHHHHHHHTTSEEEECCCSSCCCHHHHHHH-TTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTT
T ss_pred cEEEEecCCC-HHHHHHHHhcCCEEEecCCCCCCHHHHHHH-hcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCccccc
Confidence 4566654322 223345555456655443 244566544 46788877776668999999999999999999999999
Q ss_pred cchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccch
Q psy7383 106 IDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGR 185 (501)
Q Consensus 106 ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~ 185 (501)
||+++|+++||.|+|++|+++.+||||++++||+++|++..+++.++++.|......+........+|.|++|||||+|.
T Consensus 81 id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~ 160 (334)
T 2dbq_A 81 IDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGR 160 (334)
T ss_dssp BCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSH
T ss_pred ccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCH
Confidence 99999999999999999999999999999999999999999999999998841000000001113579999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 186 IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 186 IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
||+.+|++|++||++|++||++.........|+.. .++++++++||+|++|+|++++|+++|+++.++.||++++|||+
T Consensus 161 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~ 239 (334)
T 2dbq_A 161 IGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINI 239 (334)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEECCCcchhhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEEC
Confidence 99999999999999999999987653334456654 48999999999999999999999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q psy7383 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIP 345 (501)
Q Consensus 266 aRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p 345 (501)
+||.++|+++|.++|++++|.||++|||+.|| +. ++|||.++|||+|||++++|.++..++.+++++||.+|++|+.+
T Consensus 240 srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP-~~-~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~ 317 (334)
T 2dbq_A 240 ARGKVVDTNALVKALKEGWIAGAGLDVFEEEP-YY-NEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIP 317 (334)
T ss_dssp SCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS-CC-CHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCcccCHHHHHHHHHhCCeeEEEecCCCCCC-CC-CchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999 54 79999999999999999999999999999999999999999854
Q ss_pred CCCccccccccc
Q psy7383 346 DCLRNCVNKEYF 357 (501)
Q Consensus 346 ~~l~N~Vn~e~~ 357 (501)
.|+||++..
T Consensus 318 ---~~~v~~~~~ 326 (334)
T 2dbq_A 318 ---PTLVNREVI 326 (334)
T ss_dssp ---TTBSCTTHH
T ss_pred ---ccccCHHHH
Confidence 578887753
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-57 Score=461.95 Aligned_cols=314 Identities=25% Similarity=0.319 Sum_probs=267.9
Q ss_pred CEEEEecCCCCCccccccccc--ceEEEcCC---CChHHHHHHhhccceEEEEeccCCCCHHHHhcC-CCCcEEEEcCcc
Q psy7383 29 PLVALLDGRDCSIEMPILKDV--ATVAFCDA---QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKF-KTLRIIVRIGSG 102 (501)
Q Consensus 29 p~IvvLd~~~~~~e~~~L~~~--~~v~~~~~---~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~-p~LK~I~~~gaG 102 (501)
++|++.+... ....+.|++. .++.+.+. .+.+++.+. +.++++++++....+++++|+++ |+||||++.++|
T Consensus 9 ~~il~~~~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~G 86 (330)
T 2gcg_A 9 MKVFVTRRIP-AEGRVALARAADCEVEQWDSDEPIPAKELERG-VAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVG 86 (330)
T ss_dssp EEEEESSCCC-HHHHHHHHHCTTEEEEECCSSSCCCHHHHHHH-HTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESSSC
T ss_pred CEEEEECCCC-HHHHHHHHhcCCceEEEecCCCCCCHHHHHHH-hcCCeEEEECCCCCCCHHHHHhcCCCceEEEECCcc
Confidence 4566655321 2233445544 45555432 244566554 46778777766668999999999 999999999999
Q ss_pred ccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeec
Q psy7383 103 VDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVG 182 (501)
Q Consensus 103 ~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVG 182 (501)
+|+||+++|+++||.|+|++|+++.+||||++++||+++|++..+++.++++.|..... ......+|.|++|||||
T Consensus 87 ~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~----~~~~~~~l~g~~vgIIG 162 (330)
T 2gcg_A 87 IDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKP----LWLCGYGLTQSTVGIIG 162 (330)
T ss_dssp CTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCT----TSSCBCCCTTCEEEEEC
T ss_pred cccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCc----ccccCcCCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999853110 01113579999999999
Q ss_pred cchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcE
Q psy7383 183 LGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAF 261 (501)
Q Consensus 183 lG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAi 261 (501)
+|.||+.+|++|+++|++|++||++... ......++... ++++++++||+|++|+|.+++|+++|+++.++.||++++
T Consensus 163 ~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gai 241 (330)
T 2gcg_A 163 LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAV 241 (330)
T ss_dssp CSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCE
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcE
Confidence 9999999999999999999999987642 33344566655 899999999999999999999999999999999999999
Q ss_pred EEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q psy7383 262 LVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIV 341 (501)
Q Consensus 262 lINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~ 341 (501)
|||++||.++|+++|.++|++++|.||++|||+.||++. ++|||+++||++|||+++.|.++..++.+++++|+.+|++
T Consensus 242 lIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~-~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~ 320 (330)
T 2gcg_A 242 FINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPT-NHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLR 320 (330)
T ss_dssp EEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCT-TCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCC-CChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999886 7999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccc
Q psy7383 342 GRIPDCLRNCVN 353 (501)
Q Consensus 342 G~~p~~l~N~Vn 353 (501)
|+. +.|+||
T Consensus 321 g~~---~~~~v~ 329 (330)
T 2gcg_A 321 GEP---MPSELK 329 (330)
T ss_dssp TCC---CTTEEC
T ss_pred CCC---CCCCCC
Confidence 984 457776
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-56 Score=480.18 Aligned_cols=316 Identities=32% Similarity=0.488 Sum_probs=275.8
Q ss_pred CCCCCEEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcccc
Q psy7383 25 MQTRPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVD 104 (501)
Q Consensus 25 m~~kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D 104 (501)
|+.+++|++.+... +...+.|++..++.+.+..+.+++.+. +.++++++++....+++++|+++|+||||++.++|+|
T Consensus 1 mm~~~~vl~~~~~~-~~~~~~l~~~~~v~~~~~~~~~~~~~~-~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d 78 (529)
T 1ygy_A 1 MVSLPVVLIADKLA-PSTVAALGDQVEVRWVDGPDRDKLLAA-VPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLD 78 (529)
T ss_dssp --CCCEEEECSSCC-GGGGTTSCSSSEEEECCTTSHHHHHHH-GGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCT
T ss_pred CCCCcEEEEeCCCC-HHHHHHHhcCceEEEcCCCCHHHHHHH-hcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCcC
Confidence 44456788776543 233456666567777665566676654 4678887777667899999999999999999999999
Q ss_pred ccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccc
Q psy7383 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLG 184 (501)
Q Consensus 105 ~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG 184 (501)
|||+++|+++||.|+|+|++|+.+||||++++||+++|++.++++.+++|+|.+.. ....+|+|+||||||+|
T Consensus 79 ~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~-------~~~~~l~g~~vgIIG~G 151 (529)
T 1ygy_A 79 NVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSS-------FSGTEIFGKTVGVVGLG 151 (529)
T ss_dssp TBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG-------CCBCCCTTCEEEEECCS
T ss_pred ccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccC-------cCccccCCCEEEEEeeC
Confidence 99999999999999999999999999999999999999999999999999995311 11357999999999999
Q ss_pred hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEE
Q psy7383 185 RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264 (501)
Q Consensus 185 ~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilIN 264 (501)
+||+.+|++|++||++|++||++.........|+..+ ++++++++||+|++|+|++++|+++|+++.++.||+|++|||
T Consensus 152 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin 230 (529)
T 1ygy_A 152 RIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVN 230 (529)
T ss_dssp HHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEE
Confidence 9999999999999999999999875444556677765 899999999999999999999999999999999999999999
Q ss_pred cCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy7383 265 TARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRI 344 (501)
Q Consensus 265 vaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~ 344 (501)
++||.++|+++|+++|++|+|+||++|||+.||.. ++|||+++||++|||++++|.++.+++..++++|+.+|+.|+.
T Consensus 231 ~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~--~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~ 308 (529)
T 1ygy_A 231 AARGGLVDEAALADAITGGHVRAAGLDVFATEPCT--DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEF 308 (529)
T ss_dssp CSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCS--CCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCC--CchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999963 7999999999999999999999999999999999999999985
Q ss_pred CCCCccccccc
Q psy7383 345 PDCLRNCVNKE 355 (501)
Q Consensus 345 p~~l~N~Vn~e 355 (501)
+ .|+||..
T Consensus 309 ~---~~~v~~~ 316 (529)
T 1ygy_A 309 V---PDAVNVG 316 (529)
T ss_dssp C---TTBCSCC
T ss_pred C---CcccCCc
Confidence 4 4666644
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-56 Score=450.66 Aligned_cols=251 Identities=26% Similarity=0.280 Sum_probs=226.4
Q ss_pred hccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHH
Q psy7383 68 LNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWL 147 (501)
Q Consensus 68 l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~ 147 (501)
+.++|+++++. ..+ ++|+||||++.++|+|+||+++|++++|.++|. |.++.+||||++++||++.|++..+
T Consensus 32 ~~~ad~li~~~-~~~------~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~~-~~~~~~vAE~~~~~~L~~~R~~~~~ 103 (290)
T 3gvx_A 32 YYDAEAQVIKD-RYV------LGKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILEN 103 (290)
T ss_dssp CCCCSEEEESS-CCC------CCSSCCEEEECSSCCTTSCGGGSCTTSEEECCH-HHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhhhhhhhhhh-hhh------hhhhhHHHHHHhcCCceeecCCCccceEEeecC-CcceeeHHHHHHHHHHHHHHhhhhh
Confidence 35677766633 222 789999999999999999999999988777775 7889999999999999999999999
Q ss_pred HHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHH
Q psy7383 148 ANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDL 227 (501)
Q Consensus 148 ~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdel 227 (501)
++.++++.|.... .++|+|+||||||+|.||+.+|++|++|||+|++||++..... .+..+.+++++
T Consensus 104 ~~~~~~g~w~~~~---------~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~----~~~~~~~l~el 170 (290)
T 3gvx_A 104 NELMKAGIFRQSP---------TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQN----VDVISESPADL 170 (290)
T ss_dssp HHHHHTTCCCCCC---------CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTT----CSEECSSHHHH
T ss_pred hhHhhhcccccCC---------ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccc----cccccCChHHH
Confidence 9999999996432 2579999999999999999999999999999999999864321 14455689999
Q ss_pred HhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCC
Q psy7383 228 LFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKD 307 (501)
Q Consensus 228 L~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~ 307 (501)
+++||+|++|+|+|++|+++|+++.|+.||+|++|||++||.++|+++|+++|++|+|.||+||||+.||+ +|||+
T Consensus 171 l~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~----~pL~~ 246 (290)
T 3gvx_A 171 FRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE----ITETN 246 (290)
T ss_dssp HHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS----CCSCC
T ss_pred hhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc----cchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 79999
Q ss_pred CCCeEEecCCC-CCcHHHHHHHHHHHHHHHHHHHhCC
Q psy7383 308 APNILCTPHAA-FYSEASCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 308 ~pNVilTPHiA-g~T~ea~~~~~~~~~~ni~~~l~G~ 343 (501)
+|||++|||+| ++|.++.+++.+++++||++|++|+
T Consensus 247 ~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~ 283 (290)
T 3gvx_A 247 LRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGE 283 (290)
T ss_dssp CSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC--
T ss_pred hhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999 9999999999999999999999987
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-56 Score=462.23 Aligned_cols=277 Identities=25% Similarity=0.347 Sum_probs=239.4
Q ss_pred EEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchh
Q psy7383 30 LVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~ 109 (501)
||++.+.. +...+.++++.++.+.+... +..+.+.++|+++++...++++++|+ .++||||++.++|+||||++
T Consensus 5 kIl~~~~~--p~~~~~~~~~~~v~~~~~~~---~~~~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~ 78 (381)
T 3oet_A 5 KILVDENM--PYARELFSRLGEVKAVPGRP---IPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDHVDEA 78 (381)
T ss_dssp EEEEETTS--TTHHHHHTTSSEEEEECC------CHHHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTTBCHH
T ss_pred EEEECCCC--cHHHHHHhhCCcEEEeCCCC---CCHHHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEccccccccCHH
Confidence 57765543 34556777777877664321 22223567888888776779999999 67799999999999999999
Q ss_pred hhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHH
Q psy7383 110 AAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSA 189 (501)
Q Consensus 110 aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~ 189 (501)
+|+++||.|+|+||+|+.+||||++++||++.|+. + .+|+||||||||+|+||+.
T Consensus 79 ~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~---------g----------------~~l~gktvGIIGlG~IG~~ 133 (381)
T 3oet_A 79 WLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD---------G----------------FSLRDRTIGIVGVGNVGSR 133 (381)
T ss_dssp HHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT---------T----------------CCGGGCEEEEECCSHHHHH
T ss_pred HHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc---------C----------------CccCCCEEEEEeECHHHHH
Confidence 99999999999999999999999999999999862 1 3589999999999999999
Q ss_pred HHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchh----hhhcccHHHHhcCCCCcEEEEc
Q psy7383 190 VALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEH----NHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 190 iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~----T~~lI~~~~l~~MK~gAilINv 265 (501)
+|++|++|||+|++||++... ...+. ...++++++++||+|++|+|+|++ |+++|+++.|++||+|++|||+
T Consensus 134 vA~~l~a~G~~V~~~d~~~~~---~~~~~-~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~ 209 (381)
T 3oet_A 134 LQTRLEALGIRTLLCDPPRAA---RGDEG-DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINA 209 (381)
T ss_dssp HHHHHHHTTCEEEEECHHHHH---TTCCS-CBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEEC
T ss_pred HHHHHHHCCCEEEEECCChHH---hccCc-ccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEEC
Confidence 999999999999999975321 11222 345899999999999999999999 9999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy7383 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRI 344 (501)
Q Consensus 266 aRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~ 344 (501)
+||++||+++|+++|++|+|.||+||||++||++ +++||.++ +++|||+||+|.|+..++..++++|+.+|+.+..
T Consensus 210 aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~--~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~ 285 (381)
T 3oet_A 210 CRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDL--NVALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQ 285 (381)
T ss_dssp SCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSC--CHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCcccCHHHHHHHHHhCCCeEEEeeccccCCCC--cchhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999986 46799774 8999999999999999999999999999998753
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=445.36 Aligned_cols=277 Identities=26% Similarity=0.350 Sum_probs=237.3
Q ss_pred EEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchh
Q psy7383 30 LVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~ 109 (501)
||++.+.. +...+.+++..++.+.... ++..+.+.++++++++....+++++++ +|+||||++.++|+||||++
T Consensus 2 kil~~~~~--~~~~~~~~~~~~v~~~~~~---~~~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD~~ 75 (380)
T 2o4c_A 2 RILADENI--PVVDAFFADQGSIRRLPGR---AIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLDLD 75 (380)
T ss_dssp EEEEETTC--TTHHHHHGGGSEEEEECGG---GCSTTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBCHH
T ss_pred EEEEecCc--hHHHHHHHhCCcEEEecCC---cCChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhhHH
Confidence 45555432 2334556666666554321 111122367788777766689999999 99999999999999999999
Q ss_pred hhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHH
Q psy7383 110 AAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSA 189 (501)
Q Consensus 110 aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~ 189 (501)
+|+++||.|+|+||+++.+||||++++||++.|++ + .+|+|+||||||+|+||+.
T Consensus 76 ~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~---------~----------------~~l~g~tvGIIGlG~IG~~ 130 (380)
T 2o4c_A 76 YFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR---------G----------------ADLAERTYGVVGAGQVGGR 130 (380)
T ss_dssp HHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH---------T----------------CCGGGCEEEEECCSHHHHH
T ss_pred HHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh---------h----------------cccCCCEEEEEeCCHHHHH
Confidence 99999999999999999999999999999999872 1 2589999999999999999
Q ss_pred HHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchh----hhhcccHHHHhcCCCCcEEEEc
Q psy7383 190 VALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEH----NHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 190 iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~----T~~lI~~~~l~~MK~gAilINv 265 (501)
+|++|++|||+|++||++.... ..+.. ..++++++++||+|++|+|++++ |+++|+++.|++||+|++|||+
T Consensus 131 vA~~l~~~G~~V~~~d~~~~~~---~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (380)
T 2o4c_A 131 LVEVLRGLGWKVLVCDPPRQAR---EPDGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNA 206 (380)
T ss_dssp HHHHHHHTTCEEEEECHHHHHH---STTSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEEC
T ss_pred HHHHHHHCCCEEEEEcCChhhh---ccCcc-cCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEEC
Confidence 9999999999999999754221 23333 35899999999999999999999 9999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q psy7383 266 ARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRI 344 (501)
Q Consensus 266 aRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~ 344 (501)
+||.++|+++|+++|++|+|.||+||||++||++ +++||. +||++|||+||+|.++..++.+++++|+.+|++|+.
T Consensus 207 sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~--~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~ 282 (380)
T 2o4c_A 207 SRGAVVDNQALRRLLEGGADLEVALDVWEGEPQA--DPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAE 282 (380)
T ss_dssp SCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSC--CHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcccCHHHHHHHHHhCCCceEEeeeeccCCCC--chhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999975 577887 499999999999999999999999999999999873
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=319.91 Aligned_cols=228 Identities=15% Similarity=0.089 Sum_probs=190.3
Q ss_pred CCCcEEE-EcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccc
Q psy7383 91 KTLRIIV-RIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASG 169 (501)
Q Consensus 91 p~LK~I~-~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g 169 (501)
++++.|+ .+++|+|+| ++++++||.|+|+++++. +|||+. +|++....+.++.+ |.+. .
T Consensus 212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~~---------~ 271 (494)
T 3d64_A 212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKRA---------T 271 (494)
T ss_dssp TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHHH---------H
T ss_pred hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhhc---------c
Confidence 7899998 889999998 789999999999999999 999943 46665555555555 4210 1
Q ss_pred cccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 170 CARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 170 ~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI 248 (501)
..++.|++|||||+|.||+.+|++|++|||+|++||++.... .....|+.. .++++++++||+|++|+ +|+++|
T Consensus 272 g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~----~t~~lI 346 (494)
T 3d64_A 272 DVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTAT----GNYHVI 346 (494)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECS----SSSCSB
T ss_pred ccccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECC----Cccccc
Confidence 246999999999999999999999999999999999986543 223446654 48999999999999997 689999
Q ss_pred cHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCC--CCeEEecCCC-CCcHH-
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGL-VDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDA--PNILCTPHAA-FYSEA- 323 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~v-Vde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~--pNVilTPHiA-g~T~e- 323 (501)
+++.|++||+|++|||++||.+ ||+++| ++|++|+|+ |+++.||++. ++|||.+ +||++| |+| +.+.+
T Consensus 347 ~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~----~~~Dv~plp~-~~pL~~l~~~nvv~t-H~atg~~~~~ 419 (494)
T 3d64_A 347 NHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK----PQVDHIIFPD-GKRVILLAEGRLVNL-GCATGHPSFV 419 (494)
T ss_dssp CHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE----TTEEEEECTT-SCEEEEEGGGSBHHH-HTSCCSCHHH
T ss_pred CHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc----eeEEEEECCC-CCchhhcCCCCEEEE-eCcCCCCHHH
Confidence 9999999999999999999999 699999 999999998 4455557665 7999999 999999 999 66744
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q psy7383 324 SCTELREMAASEIRRAIVGRIPDCLRNCVN 353 (501)
Q Consensus 324 a~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn 353 (501)
...++..++++|+.+|++|+.+ .|.|+
T Consensus 420 ~~~~~a~~~~~ni~~~~~g~~~---~n~V~ 446 (494)
T 3d64_A 420 MSNSFTNQTLAQIELFTRGGEY---ANKVY 446 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGS---CSSEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCC---CCcee
Confidence 6778889999999999999854 45553
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=313.37 Aligned_cols=223 Identities=14% Similarity=0.096 Sum_probs=193.2
Q ss_pred CCCCcEEE-EcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhcc
Q psy7383 90 FKTLRIIV-RIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAAS 168 (501)
Q Consensus 90 ~p~LK~I~-~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~ 168 (501)
+++++.|+ .+++|+|++ ++++++||.|+|+++++. +|+| .++|++....+.++++ |.+.
T Consensus 191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r~--------- 250 (479)
T 1v8b_A 191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMRA--------- 250 (479)
T ss_dssp HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHHH---------
T ss_pred hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhhc---------
Confidence 37899998 889999998 789999999999999998 9999 4468887777778777 6321
Q ss_pred ccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 169 GCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 169 g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
...++.||+|||||+|.||+.+|++|++|||+|++||++.... .....|+. +.++++++++||+|++|+ +|+++
T Consensus 251 ~~~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~-~~~l~ell~~aDiVi~~~----~t~~l 325 (479)
T 1v8b_A 251 TDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFN-VVTLDEIVDKGDFFITCT----GNVDV 325 (479)
T ss_dssp HCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCE-ECCHHHHTTTCSEEEECC----SSSSS
T ss_pred cccccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCE-ecCHHHHHhcCCEEEECC----Chhhh
Confidence 1246999999999999999999999999999999999986432 23345665 458999999999999995 78999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHH--HHHcCCceEEEEecCCCCCCCCCCCCCCCC--CCeEEecCCC-CCc
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGL-VDDDSLAA--ALKQGRIRAAALDVHESEPYNVFQGNLKDA--PNILCTPHAA-FYS 321 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~v-Vde~aL~~--aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~--pNVilTPHiA-g~T 321 (501)
|+++.|+.||+|++|||++||.+ ||+++|.+ +|++|+|+ +++|||+. +. ++|||.+ +||++| |+| +.+
T Consensus 326 I~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~pl---p~-~~~l~~l~~~nvv~t-H~atghp 399 (479)
T 1v8b_A 326 IKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITL---PN-GNKIIVLARGRLLNL-GCATGHP 399 (479)
T ss_dssp BCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEEC---TT-SCEEEEEGGGSBHHH-HSSCCSC
T ss_pred cCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEEC---CC-CCeeeEecCCCEEEE-eccCCCC
Confidence 99999999999999999999999 99999999 99999998 89999843 33 6899999 999999 999 667
Q ss_pred HH-HHHHHHHHHHHHHHHHHhCC
Q psy7383 322 EA-SCTELREMAASEIRRAIVGR 343 (501)
Q Consensus 322 ~e-a~~~~~~~~~~ni~~~l~G~ 343 (501)
.+ ...++..++++|+.+|++|+
T Consensus 400 ~e~~~~s~a~~~~~ni~~~~~g~ 422 (479)
T 1v8b_A 400 AFVMSFSFCNQTFAQLDLWQNKD 422 (479)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHHHHHHHHHHcCC
Confidence 66 66788899999999999987
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-27 Score=233.66 Aligned_cols=168 Identities=19% Similarity=0.216 Sum_probs=142.4
Q ss_pred hhccceEEEEe----------------ccCCCCHHHHhcCCCCcEEEEcCccccccch-hhhhhcCeEEeecC------C
Q psy7383 67 VLNEAVGALMW----------------HTIILTKEDLEKFKTLRIIVRIGSGVDNIDV-KAAGELGIAVCNVP------G 123 (501)
Q Consensus 67 ~l~~a~~vli~----------------~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~-~aa~~~GI~Vtn~p------g 123 (501)
.+.++|+++++ ....+++++++++|+||+|+ +|+|++|+ ++|+++||.|+|++ +
T Consensus 55 ~~~~~d~ii~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~ 131 (293)
T 3d4o_A 55 DWNTVDAILLPISGTNEAGKVDTIFSNESIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAI 131 (293)
T ss_dssp CGGGCSEEECCTTCCCTTCBCCBSSCSCCCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHH
T ss_pred HHhcCCEEEeccccccCCceeecccccCCccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeee
Confidence 34567777765 23358999999999999997 89999998 89999999999998 8
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEE
Q psy7383 124 YGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF 203 (501)
Q Consensus 124 ~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~ 203 (501)
+++.+|||++++++|.+. ..++.|++|+|||+|.||+.+|++|++||++|++
T Consensus 132 ~~~~svae~a~~~~l~~~----------------------------~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~ 183 (293)
T 3d4o_A 132 YNSIPTAEGTIMMAIQHT----------------------------DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKV 183 (293)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------------------SSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred eccHhHHHHHHHHHHHhc----------------------------CCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEE
Confidence 999999999999988630 1358999999999999999999999999999999
Q ss_pred ECCCCCc-hhhhhcCceec--CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q psy7383 204 YDPYLPD-GIEKSLGLTRV--YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 204 ~dr~~~~-~~~~~~gv~~~--~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~v 270 (501)
|||+... ......|++.+ .++++++++||+|++|+|+ ++++++.|+.||++++|||++|+..
T Consensus 184 ~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~ 248 (293)
T 3d4o_A 184 GARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG 248 (293)
T ss_dssp EESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred EECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence 9998643 22234565532 4788999999999999995 7899999999999999999999764
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-25 Score=234.95 Aligned_cols=222 Identities=17% Similarity=0.128 Sum_probs=176.3
Q ss_pred CCcE-EEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhcccc
Q psy7383 92 TLRI-IVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGC 170 (501)
Q Consensus 92 ~LK~-I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~ 170 (501)
+++- +...++|+|++ .++.++||.++|+++++. +|||+. +|++....+.+..+ |.+ . ..
T Consensus 210 ~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g-~~r----~-----~~ 269 (494)
T 3ce6_A 210 SVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG-INR----G-----TD 269 (494)
T ss_dssp HCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH-HHH----H-----HC
T ss_pred CeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH-HHh----c-----cC
Confidence 4444 45889999998 678899999999999998 999953 34444333333332 211 0 01
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
..+.|++|+|+|+|.||+.+|++|+++|++|+++|++... ...+..|++. .+++++++++|+|++|++ +.++|+
T Consensus 270 ~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atg----t~~~i~ 344 (494)
T 3ce6_A 270 ALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATG----NKDIIM 344 (494)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSS----SSCSBC
T ss_pred CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCC----CHHHHH
Confidence 2589999999999999999999999999999999987643 3445677764 589999999999999874 567899
Q ss_pred HHHHhcCCCCcEEEEcCCCCc-cCHHHHHH-HHHcCCceEEEEecCCCCCCCCCCCC--CCCCCCeE----EecCCCCCc
Q psy7383 250 EFTIKQMRPGAFLVNTARGGL-VDDDSLAA-ALKQGRIRAAALDVHESEPYNVFQGN--LKDAPNIL----CTPHAAFYS 321 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~v-Vde~aL~~-aL~~g~I~GAaLDVfe~EPl~~~~~p--L~~~pNVi----lTPHiAg~T 321 (501)
++.|+.||++++|||++|+.+ +|+++|.+ +|++++|. +.+|||+.++. .++ |+...|++ +|||+++.+
T Consensus 345 ~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~---~~~l~LL~~grlvnL~~~TPH~a~~~ 420 (494)
T 3ce6_A 345 LEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT---GRSIIVLSEGRLLNLGNATGHPSFVM 420 (494)
T ss_dssp HHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT---CCEEEEEGGGSCHHHHHSCCSCHHHH
T ss_pred HHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc---chHHHHHhCCCEEeccCCCCCccccc
Confidence 999999999999999999999 99999998 88888998 57899876442 344 56678888 999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Q psy7383 322 EASCTELREMAASEIRRAIVGRIP 345 (501)
Q Consensus 322 ~ea~~~~~~~~~~ni~~~l~G~~p 345 (501)
.++ +.+.+.+++.+|++|+..
T Consensus 421 ~~s---~~~qa~~ai~~~~~g~~~ 441 (494)
T 3ce6_A 421 SNS---FANQTIAQIELWTKNDEY 441 (494)
T ss_dssp HHH---HHHHHHHHHHHHHTGGGC
T ss_pred hHH---HHHHHHHHHHHHHcCCCC
Confidence 765 467899999999998743
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-23 Score=210.23 Aligned_cols=174 Identities=17% Similarity=0.218 Sum_probs=135.6
Q ss_pred hhccceEEEEe----c----------cCC--CCHHHHhcCCCCcEEEEcCccccccc-hhhhhhcCeEEeecCCCCchhh
Q psy7383 67 VLNEAVGALMW----H----------TII--LTKEDLEKFKTLRIIVRIGSGVDNID-VKAAGELGIAVCNVPGYGVEEV 129 (501)
Q Consensus 67 ~l~~a~~vli~----~----------~~~--l~~e~l~~~p~LK~I~~~gaG~D~ID-~~aa~~~GI~Vtn~pg~~a~aV 129 (501)
.+.++|++++| . ... +++++++.+|++|+|+ +|+|++| +++|.++||.|+|+++++ ++
T Consensus 57 ~~~~~d~ii~~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v 131 (300)
T 2rir_A 57 PFQQIDSIILPVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI 131 (300)
T ss_dssp CGGGCSEEECCSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH
T ss_pred HHhcCCEEEeccccccCCcccccccccCCccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce
Confidence 34567777762 1 245 7899999999999998 8999999 999999999999999874 33
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 130 ADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 130 AE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
++.|++... +|.|... . .....+++|+||+|||+|.||+.+|++|++||++|++|||+..
T Consensus 132 ---------~~~r~~~~~-----~g~~~~~---~---~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~ 191 (300)
T 2rir_A 132 ---------AIYNSIPTV-----EGTIMLA---I---QHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSA 191 (300)
T ss_dssp ---------HHHHHHHHH-----HHHHHHH---H---HTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred ---------EEEcCccHH-----HHHHHHH---H---HhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 334655443 2333210 0 0112479999999999999999999999999999999999764
Q ss_pred ch-hhhhcCcee--cCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q psy7383 210 DG-IEKSLGLTR--VYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 210 ~~-~~~~~gv~~--~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~v 270 (501)
.. ...+.+++. ..++++++++||+|++|+|+ ++++++.|+.||++++|||++||..
T Consensus 192 ~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~ 250 (300)
T 2rir_A 192 HLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG 250 (300)
T ss_dssp HHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred HHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence 31 122345542 25789999999999999996 7899999999999999999999864
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=210.40 Aligned_cols=247 Identities=16% Similarity=0.162 Sum_probs=178.2
Q ss_pred hhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEe----------ecCCCCchhhHHHHHHH
Q psy7383 67 VLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVC----------NVPGYGVEEVADTTLCL 136 (501)
Q Consensus 67 ~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vt----------n~pg~~a~aVAE~alal 136 (501)
.+.++|.+ +.-..++++++....++..++.....++|...++++.++||++. |.|.++ ++||++..+
T Consensus 64 ~~~~adii-~~vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~~ 140 (377)
T 2vhw_A 64 VWADADLL-LKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGRL 140 (377)
T ss_dssp HHHHCSEE-ECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHHH
T ss_pred HhccCCEE-EEeCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHHH
Confidence 34456654 33334566777777788888888888999999999999999997 556554 567999866
Q ss_pred HHHHH-hhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-h-hh
Q psy7383 137 ILNLY-RRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-G-IE 213 (501)
Q Consensus 137 ~L~l~-R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~-~~ 213 (501)
++.+. |++. ..+.++|++. .+..++.|++|+|+|+|.||+.+|+.++++|++|++||++... + ..
T Consensus 141 a~~~a~r~l~----~~~~g~~~~~--------~~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~ 208 (377)
T 2vhw_A 141 AAQVGAYHLM----RTQGGRGVLM--------GGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLD 208 (377)
T ss_dssp HHHHHHHHTS----GGGTSCCCCT--------TCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHH----HhcCCCcccc--------cCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 55554 6652 2333443211 1124689999999999999999999999999999999987543 1 12
Q ss_pred hhcCce------ecCCHHHHHhcCCEEEEec--cCchhhhhcccHHHHhcCCCCcEEEEcC--CCCccCHHHHHHHHHcC
Q psy7383 214 KSLGLT------RVYTLQDLLFQSDCVSLHC--TLNEHNHHLINEFTIKQMRPGAFLVNTA--RGGLVDDDSLAAALKQG 283 (501)
Q Consensus 214 ~~~gv~------~~~sLdelL~~sDvVil~l--Plt~~T~~lI~~~~l~~MK~gAilINva--RG~vVde~aL~~aL~~g 283 (501)
+..+.. ...+++++++++|+|+.++ |.+ +|.++|+++.++.||++++|||++ +|.
T Consensus 209 ~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg-------------- 273 (377)
T 2vhw_A 209 AEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG-------------- 273 (377)
T ss_dssp HHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC--------------
T ss_pred HhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC--------------
Confidence 223432 1235778899999999966 555 788999999999999999999999 332
Q ss_pred CceEEEEecCCC-CCCCCCCCCCCCCCCeE--EecCCCCCcHHHH---------HHHHHHHHHHHH-HHHhCCCCCCCcc
Q psy7383 284 RIRAAALDVHES-EPYNVFQGNLKDAPNIL--CTPHAAFYSEASC---------TELREMAASEIR-RAIVGRIPDCLRN 350 (501)
Q Consensus 284 ~I~GAaLDVfe~-EPl~~~~~pL~~~pNVi--lTPHiAg~T~ea~---------~~~~~~~~~ni~-~~l~G~~p~~l~N 350 (501)
||+. ||.+. ++|+|..+||+ +|||+++.+...- ..+.+++.++.. .+.+++ .+.|
T Consensus 274 --------v~e~~ep~~~-~~~~~~~~~v~i~~~phl~~~~~~~as~~~~~~~~~~~~~l~~~g~~~~~~~~~---~l~~ 341 (377)
T 2vhw_A 274 --------CFEGSRPTTY-DHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNP---ALAK 341 (377)
T ss_dssp --------SBTTCCCBCS-SSCEEEETTEEEECBTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---HHHT
T ss_pred --------ccccccCCCC-CCCEEEECCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHHHhCChhhhhhcCh---HHhC
Confidence 7888 88765 78999999998 9999999886622 334444555533 444443 3556
Q ss_pred ccccc
Q psy7383 351 CVNKE 355 (501)
Q Consensus 351 ~Vn~e 355 (501)
.||..
T Consensus 342 ~v~~~ 346 (377)
T 2vhw_A 342 GLSTH 346 (377)
T ss_dssp TEEEE
T ss_pred cEEee
Confidence 66543
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-21 Score=200.73 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=125.5
Q ss_pred ccCCeEEeeccchHHHHHHHHHHh-CCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCE-EEEeccCchhhhhcccH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKA-FGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDC-VSLHCTLNEHNHHLINE 250 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~a-fG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDv-Vil~lPlt~~T~~lI~~ 250 (501)
|+||||+|+|+|+||+.+|++|++ |||+|++|++.... . .+...+ +++++++.+|. .++ +|+ ++|++ |+.
T Consensus 210 l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~-~---~~~~gv-dl~~L~~~~d~~~~l-~~l-~~t~~-i~~ 281 (419)
T 1gtm_A 210 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG-I---YNPDGL-NADEVLKWKNEHGSV-KDF-PGATN-ITN 281 (419)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE-E---EEEEEE-CHHHHHHHHHHHSSS-TTC-TTSEE-ECH
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCcc-c---cCccCC-CHHHHHHHHHhcCEe-ecC-ccCee-eCH
Confidence 999999999999999999999999 99999999533221 1 111222 67777775553 222 566 57888 899
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCC----C--------
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHA----A-------- 318 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHi----A-------- 318 (501)
+.|..||. .+|||++||.+||+++ +++|+.+.|.+++ +||+.+..++||.++||++|||+ +
T Consensus 282 ~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E 354 (419)
T 1gtm_A 282 EELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFE 354 (419)
T ss_dssp HHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHH
T ss_pred HHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcceeeeeh
Confidence 99999998 6999999999999999 6999999999877 89986423689999999999999 5
Q ss_pred ---------CCcHHHHHHHHHHHHHHHHHHHh
Q psy7383 319 ---------FYSEASCTELREMAASEIRRAIV 341 (501)
Q Consensus 319 ---------g~T~ea~~~~~~~~~~ni~~~l~ 341 (501)
|.+++..+++.+++.+|+.++++
T Consensus 355 ~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~ 386 (419)
T 1gtm_A 355 WVQNITGYYWTIEEVRERLDKKMTKAFYDVYN 386 (419)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 66788899999999999988873
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-19 Score=184.89 Aligned_cols=248 Identities=14% Similarity=0.146 Sum_probs=158.9
Q ss_pred hhccceEEEEeccCCCCHHHHhcC-CCCcEEEEcCccccccchhhhhhcCeEEe---ecCCC-Cc----hhhHHHHH--H
Q psy7383 67 VLNEAVGALMWHTIILTKEDLEKF-KTLRIIVRIGSGVDNIDVKAAGELGIAVC---NVPGY-GV----EEVADTTL--C 135 (501)
Q Consensus 67 ~l~~a~~vli~~~~~l~~e~l~~~-p~LK~I~~~gaG~D~ID~~aa~~~GI~Vt---n~pg~-~a----~aVAE~al--a 135 (501)
.+ ++|.++.+. .++ .+.++.+ +++++|.....+.|..+++++.++||++. +++.. .. .++++.+- +
T Consensus 63 ~~-~ad~il~vk-~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~a 139 (369)
T 2eez_A 63 AW-GAEMVVKVK-EPL-PEEYGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMA 139 (369)
T ss_dssp HT-TSSEEECSS-CCC-GGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHH
T ss_pred ee-cCCEEEEEC-CCC-HHHHhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHH
Confidence 45 577655333 344 4457776 77999999999999999999999999997 44432 11 34455443 3
Q ss_pred HHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-h-hh
Q psy7383 136 LILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-G-IE 213 (501)
Q Consensus 136 l~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~-~~ 213 (501)
.++++ +.+... ..++.. ...+..++.+++|+|+|.|.||+.+++.|+.+|++|+++|++... + ..
T Consensus 140 v~~a~-~~l~~~----~~g~~~--------~~~~~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~ 206 (369)
T 2eez_A 140 PQVGA-QFLEKP----KGGRGV--------LLGGVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLD 206 (369)
T ss_dssp HHHHH-HHTSGG----GTSCCC--------CTTCBTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHH-HHHHHh----cCCCce--------ecCCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 33222 222111 111100 011224689999999999999999999999999999999987532 1 11
Q ss_pred hhcCce------ecCCHHHHHhcCCEEEEeccCch-hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 214 KSLGLT------RVYTLQDLLFQSDCVSLHCTLNE-HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 214 ~~~gv~------~~~sLdelL~~sDvVil~lPlt~-~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+..+.. ...++++++.++|+|+.+++.+. .+..++.++.++.||++++|||++-. .|
T Consensus 207 ~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g--- 270 (369)
T 2eez_A 207 DVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG--- 270 (369)
T ss_dssp HHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC--------------------
T ss_pred HhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---
Confidence 223332 12356788899999999998765 67888999999999999999999831 12
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCeE---------EecCCCCC--cHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q psy7383 287 AAALDVHESEPYNVFQGNLKDAPNIL---------CTPHAAFY--SEASCTELREMAASEIRRAIVGRIPDCLRNCVN 353 (501)
Q Consensus 287 GAaLDVfe~EPl~~~~~pL~~~pNVi---------lTPHiAg~--T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn 353 (501)
|+ +||+ ||.+. ++|+|..+||+ +|||+++. +.+...++.+++.++++.++.++. +.|.+|
T Consensus 271 g~-~d~~--ep~~~-~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~~---l~~~~~ 341 (369)
T 2eez_A 271 GC-VETI--RPTTH-AEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDAA---LLKGLN 341 (369)
T ss_dssp -------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCHH---HHTTEE
T ss_pred CC-CCcc--cCCCC-CCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHhcChhhhhcChH---HhcCEE
Confidence 44 9998 67654 68899999999 88998874 567788999999999877777753 445554
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-18 Score=178.29 Aligned_cols=193 Identities=15% Similarity=0.117 Sum_probs=138.3
Q ss_pred ceEEEEeccCCCCHHHHhcC-CCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHH--
Q psy7383 71 AVGALMWHTIILTKEDLEKF-KTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWL-- 147 (501)
Q Consensus 71 a~~vli~~~~~l~~e~l~~~-p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~-- 147 (501)
++.++... ...++.++.+ +++++|...+.|+|++|++++.++||+|.+ .+.|+|++.++.|.+++.+...
T Consensus 73 adiil~vk--~p~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag 145 (401)
T 1x13_A 73 SEIILKVN--APLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAG 145 (401)
T ss_dssp SSEEECSS--CCCHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHH
T ss_pred CCeEEEeC--CCCHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHH
Confidence 66544332 2357888887 789999999999999999999999999964 4667776666644444433222
Q ss_pred HHHHHcCCccCCchh-hhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC---
Q psy7383 148 ANMVREGKKFTGPEQ-LREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY--- 222 (501)
Q Consensus 148 ~~~~~~g~w~~~~~~-~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~--- 222 (501)
...++.+.|+..... .+.... .++.+++|+|+|+|.||+.+++.++++|++|+++|++... ...+++|.+.+.
T Consensus 146 ~~av~~~~~~~~~~~~~~~~~~--g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~ 223 (401)
T 1x13_A 146 YRAIVEAAHEFGRFFTGQITAA--GKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDF 223 (401)
T ss_dssp HHHHHHHHHHCSSCSSCEEETT--EEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--
T ss_pred HHHHHHHHHhcccccCCceeec--cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecc
Confidence 233443333211100 000001 1588999999999999999999999999999999998643 233455655331
Q ss_pred ------------------------CHHHHHhcCCEEEEe--ccCchhhhhcccHHHHhcCCCCcEEEEcC--CCCccCH
Q psy7383 223 ------------------------TLQDLLFQSDCVSLH--CTLNEHNHHLINEFTIKQMRPGAFLVNTA--RGGLVDD 273 (501)
Q Consensus 223 ------------------------sLdelL~~sDvVil~--lPlt~~T~~lI~~~~l~~MK~gAilINva--RG~vVde 273 (501)
++++++.++|+||.+ +|.. .+..+|+++.++.||+|++|||++ ||..+++
T Consensus 224 ~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~ 301 (401)
T 1x13_A 224 KEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY 301 (401)
T ss_dssp ------CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred cccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence 367888999999999 5532 466889999999999999999999 8876654
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-18 Score=178.60 Aligned_cols=220 Identities=18% Similarity=0.238 Sum_probs=162.6
Q ss_pred CCCcEEEEcCccccccchhhhh-----hcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhh
Q psy7383 91 KTLRIIVRIGSGVDNIDVKAAG-----ELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLRE 165 (501)
Q Consensus 91 p~LK~I~~~gaG~D~ID~~aa~-----~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~ 165 (501)
+.+++|...++|+|++++..+. ++++.+++.+|.. ..++++.+.+++.+.|++..... ...+.|.........
T Consensus 80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~-~~~~~~~~~~a~~~~k~v~~~~~-~~~~~~s~a~~av~~ 157 (404)
T 1gpj_A 80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTL-DEALKIVFRRAINLGKRAREETR-ISEGAVSIGSAAVEL 157 (404)
T ss_dssp HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHSS-TTCSCCSHHHHHHHH
T ss_pred hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCc-hHHHHHHHHHHhhhhccCcchhh-hcCCCccHHHHHHHH
Confidence 3578899999999999998887 8899999998884 68999999999999998765432 223334211110010
Q ss_pred hccccccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhhhcCceec--CCHHHHHhcCCEEEEeccC
Q psy7383 166 AASGCARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEKSLGLTRV--YTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 166 ~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~~~gv~~~--~sLdelL~~sDvVil~lPl 240 (501)
......++.|++|+|||+|.||+.+++.|+.+|+ +|+++||+... ...+.+|...+ .++++++.++|+|+.|++.
T Consensus 158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~ 237 (404)
T 1gpj_A 158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA 237 (404)
T ss_dssp HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence 0000124789999999999999999999999999 99999998643 33445565432 4677889999999999764
Q ss_pred chhhhhcccHHHHhc--CC----CCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEE-
Q psy7383 241 NEHNHHLINEFTIKQ--MR----PGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILC- 313 (501)
Q Consensus 241 t~~T~~lI~~~~l~~--MK----~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVil- 313 (501)
+..+++.+.++. || ++.++||++ +|.+. ++++++++||++
T Consensus 238 ---~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i-~~~l~~l~~v~l~ 284 (404)
T 1gpj_A 238 ---PHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDV-EEGVENIEDVEVR 284 (404)
T ss_dssp ---SSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSB-CTTGGGSTTEEEE
T ss_pred ---CCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCC-CccccccCCeEEE
Confidence 456777777776 43 455666654 36544 578999999999
Q ss_pred -ecCCCCCcHHHHH----------HHHHHHHHHHHHHHhCCCC
Q psy7383 314 -TPHAAFYSEASCT----------ELREMAASEIRRAIVGRIP 345 (501)
Q Consensus 314 -TPHiAg~T~ea~~----------~~~~~~~~ni~~~l~G~~p 345 (501)
|||++..+.++.+ .+.+..++++..|+.+..+
T Consensus 285 d~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~~ 327 (404)
T 1gpj_A 285 TIDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLKE 327 (404)
T ss_dssp EHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998887754 5677778888888877543
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.5e-17 Score=169.91 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=114.7
Q ss_pred EcCcccccc-chhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCC
Q psy7383 98 RIGSGVDNI-DVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGD 176 (501)
Q Consensus 98 ~~gaG~D~I-D~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gk 176 (501)
-+.+|+..+ .+....+.+|+|.|++.. +.++.+-........+.... .+.. ..++.|+
T Consensus 154 eTttGv~rL~~~~~~g~L~iPVinvnds----vtk~~~Dn~~Gt~~slldgi--~rat---------------g~~L~Gk 212 (436)
T 3h9u_A 154 ETTTGVKNLYKRLQRGKLTIPAMNVNDS----VTKSKFDNLYGCRESLVDGI--KRAT---------------DVMIAGK 212 (436)
T ss_dssp CSHHHHHHHHHHHHHTCCCSCEEECTTS----HHHHTTHHHHHHHHHHHHHH--HHHH---------------CCCCTTC
T ss_pred ccCcChHHHHHHHHcCCCCCceEeechh----hhhhhhhccccchHHHHHHH--HHhc---------------CCcccCC
Confidence 345555443 234556789999999754 44444433333222211111 1100 1358999
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhc
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~ 255 (501)
+|+|+|+|.||+.+|++|++||++|++||++.... .....|++. .+++|++++||||++ +..|+++|+++.|++
T Consensus 213 tVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVil----t~gt~~iI~~e~l~~ 287 (436)
T 3h9u_A 213 TACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVT----TTGNDDIITSEHFPR 287 (436)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEE----CSSCSCSBCTTTGGG
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEE----CCCCcCccCHHHHhh
Confidence 99999999999999999999999999999875332 233456654 489999999999996 456899999999999
Q ss_pred CCCCcEEEEcCCCCc-cCHHHHHHH
Q psy7383 256 MRPGAFLVNTARGGL-VDDDSLAAA 279 (501)
Q Consensus 256 MK~gAilINvaRG~v-Vde~aL~~a 279 (501)
||+|++|||++||.+ ||.++|.+.
T Consensus 288 MK~gAIVINvgRg~vEID~~~L~~~ 312 (436)
T 3h9u_A 288 MRDDAIVCNIGHFDTEIQVAWLKAN 312 (436)
T ss_dssp CCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred cCCCcEEEEeCCCCCccCHHHHHhh
Confidence 999999999999998 899999864
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-16 Score=160.66 Aligned_cols=200 Identities=17% Similarity=0.137 Sum_probs=134.3
Q ss_pred HhhccceEEEEeccCCC----CHHHHhcCC-CCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHH
Q psy7383 66 KVLNEAVGALMWHTIIL----TKEDLEKFK-TLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNL 140 (501)
Q Consensus 66 ~~l~~a~~vli~~~~~l----~~e~l~~~p-~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l 140 (501)
+.+.++|.++... .++ +++.++.++ .+++|.....+.|+.+++++.++||++++. ....+.+++..+. +|+.
T Consensus 63 ~~~~~adiil~v~-~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~ 139 (384)
T 1l7d_A 63 QALSQADVVWKVQ-RPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSS 139 (384)
T ss_dssp HHHSSCSEEEEEE-CCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHH
T ss_pred hhhcCCCEEEEec-CcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhH
Confidence 3456677655543 455 788899986 589999999999999999999999999984 2222222222222 2222
Q ss_pred HhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCce
Q psy7383 141 YRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLT 219 (501)
Q Consensus 141 ~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~ 219 (501)
.+.+ .....+..+.|...... .....+..++.+++|+|+|+|.||+.+++.++++|++|+++|++... +..+++|.+
T Consensus 140 ~a~~-ag~~av~~~~~~~~~~~-~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~ 217 (384)
T 1l7d_A 140 QSNL-AGYRAVIDGAYEFARAF-PMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK 217 (384)
T ss_dssp HHHH-HHHHHHHHHHHHCSSCS-SCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE
T ss_pred HHHH-HHHHHHHHHHHHhhhcc-cchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 2222 11222222222110000 00111224689999999999999999999999999999999988643 333446654
Q ss_pred ec--CC---------------------------HHHHHhcCCEEEEec--cCchhhhhcccHHHHhcCCCCcEEEEcC--
Q psy7383 220 RV--YT---------------------------LQDLLFQSDCVSLHC--TLNEHNHHLINEFTIKQMRPGAFLVNTA-- 266 (501)
Q Consensus 220 ~~--~s---------------------------LdelL~~sDvVil~l--Plt~~T~~lI~~~~l~~MK~gAilINva-- 266 (501)
.+ .. ++++++++|+|+.++ |.+ .+.++++++.++.||++++|||++
T Consensus 218 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~ 296 (384)
T 1l7d_A 218 FITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVE 296 (384)
T ss_dssp ECCC-----------------------CCHHHHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGG
T ss_pred EEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecC
Confidence 33 11 778889999999777 333 246788999999999999999999
Q ss_pred CCCcc
Q psy7383 267 RGGLV 271 (501)
Q Consensus 267 RG~vV 271 (501)
||..+
T Consensus 297 ~gg~~ 301 (384)
T 1l7d_A 297 AGGNC 301 (384)
T ss_dssp GTCSS
T ss_pred CCCCe
Confidence 76543
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-16 Score=164.04 Aligned_cols=154 Identities=17% Similarity=0.133 Sum_probs=111.3
Q ss_pred cCcccccc-chhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCe
Q psy7383 99 IGSGVDNI-DVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDT 177 (501)
Q Consensus 99 ~gaG~D~I-D~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gkt 177 (501)
+++|+-.+ .+...-...++|.|+. +++..+-+-....+.+.+..... +. ...+|.|||
T Consensus 191 TtTGv~rL~~m~~~g~L~~PvinVn----ds~tK~~fDn~yG~~eslvdgI~--Ra---------------tg~~L~GKT 249 (464)
T 3n58_A 191 TTTGVNRLYQLQKKGLLPFPAINVN----DSVTKSKFDNKYGCKESLVDGIR--RG---------------TDVMMAGKV 249 (464)
T ss_dssp SHHHHHHHHHHHHHTCCCSCEEECT----TSHHHHTTHHHHHHHHHHHHHHH--HH---------------HCCCCTTCE
T ss_pred cccchHHHHHHHHcCCCCCCEEeec----cHhhhhhhhhhhcchHHHHHHHH--Hh---------------cCCcccCCE
Confidence 44555443 1222234567788875 45666555544444333221111 10 013599999
Q ss_pred EEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcC
Q psy7383 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQM 256 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~M 256 (501)
|+|+|+|.||+.+|++|++|||+|+++|+.+... .....|++. .++++++++||||+++. .|+++|+++.|++|
T Consensus 250 VgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL~~ADIVv~at----gt~~lI~~e~l~~M 324 (464)
T 3n58_A 250 AVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAASTADIVVTTT----GNKDVITIDHMRKM 324 (464)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECC----SSSSSBCHHHHHHS
T ss_pred EEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHHhhCCEEEECC----CCccccCHHHHhcC
Confidence 9999999999999999999999999999765322 223456664 48999999999999863 47899999999999
Q ss_pred CCCcEEEEcCCCCc-cCHHHHHH
Q psy7383 257 RPGAFLVNTARGGL-VDDDSLAA 278 (501)
Q Consensus 257 K~gAilINvaRG~v-Vde~aL~~ 278 (501)
|+|++|||++||.+ ||.++|.+
T Consensus 325 K~GAILINvGRgdvEID~~aL~~ 347 (464)
T 3n58_A 325 KDMCIVGNIGHFDNEIQVAALRN 347 (464)
T ss_dssp CTTEEEEECSSSTTTBTCGGGTT
T ss_pred CCCeEEEEcCCCCcccCHHHHHh
Confidence 99999999999998 99999874
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-15 Score=155.32 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=87.6
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
..|.|++|+|+|+|.||+.+|++|++||++|+++|+..... .+...|++. .+++++++++|+|+++ ..|+++|+
T Consensus 216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~a----tgt~~lI~ 290 (435)
T 3gvp_A 216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITC----TGNKNVVT 290 (435)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEEC----SSCSCSBC
T ss_pred ceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEEC----CCCcccCC
Confidence 35899999999999999999999999999999999875322 233456554 5899999999999994 46789999
Q ss_pred HHHHhcCCCCcEEEEcCCCCc-cCHHHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGL-VDDDSLA 277 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~v-Vde~aL~ 277 (501)
++.|+.||+|++|||++||.+ +|.++|.
T Consensus 291 ~e~l~~MK~gailINvgrg~~EId~~~L~ 319 (435)
T 3gvp_A 291 REHLDRMKNSCIVCNMGHSNTEIDVASLR 319 (435)
T ss_dssp HHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred HHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence 999999999999999999998 7877764
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=137.45 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=101.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~ 252 (501)
++|||||+|.||..||++|...|++|++|||+... +...+.|...+.++.|+++.||+|++|+|..++.+.++. ...
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~ 83 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 83 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence 58999999999999999999999999999998643 334457888888999999999999999999988888874 347
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
++.+++|.++||++....-+...+.+.+++..+. ++|.
T Consensus 84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa 121 (300)
T 3obb_A 84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA 121 (300)
T ss_dssp TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence 8899999999999999999999999999999887 7885
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-13 Score=135.05 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=99.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
+||||||+|.||..||++|...|++|++|||+... +...+.|...+.++.|+++.||+|++++|.....+.++..+.+.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~ 85 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE 85 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence 57999999999999999999999999999998654 33445688888899999999999999999888888888888999
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 255 QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 255 ~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.++++.++||++....-+.+.+.+.+++..+. ++|.
T Consensus 86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda 121 (297)
T 4gbj_A 86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA 121 (297)
T ss_dssp HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred hcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC
Confidence 99999999999999999999999999999886 7885
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=132.01 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=99.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++..++|||||+|.||+.+|+.|...|++|++||++... +...+.|+....++++++++||+|++++|...+++.++.+
T Consensus 6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~ 85 (306)
T 3l6d_A 6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM 85 (306)
T ss_dssp CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc
Confidence 356789999999999999999999999999999987643 2233457777779999999999999999988778888753
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+.+..++++.++||+++....+.+.+.+.+++..+. ++|.
T Consensus 86 ~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~--~vda 125 (306)
T 3l6d_A 86 PGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH--YVKG 125 (306)
T ss_dssp TTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE--EEEE
T ss_pred cchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEec
Confidence 345667899999999999999999999999887765 6674
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=130.12 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=99.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+...++|||||+|.||+.+|+.|...|++|++||++... +...+.|+....++++++++||+|++++|....++.++..
T Consensus 28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~ 107 (320)
T 4dll_A 28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA 107 (320)
T ss_dssp -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence 356679999999999999999999999999999998643 2233457777789999999999999999987777777643
Q ss_pred -HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 251 -FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 251 -~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+.+..++++.++||++++...+.+.+.+.+++..+. ++|.
T Consensus 108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~~ 148 (320)
T 4dll_A 108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA--HLDT 148 (320)
T ss_dssp TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE--EEeC
Confidence 677889999999999999999999999999887765 5553
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=124.92 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=105.5
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc-hhhhhcCc--eecCCHHH-HHhcCCEEEEeccCchhhhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD-GIEKSLGL--TRVYTLQD-LLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~-~~~~~~gv--~~~~sLde-lL~~sDvVil~lPlt~~T~~ 246 (501)
+.-++|||||+|.||+.+|+.|+..|+ +|++||++... +...+.|+ ....++++ ++++||+|++++|... +..
T Consensus 31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~-~~~ 109 (314)
T 3ggo_A 31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT-FRE 109 (314)
T ss_dssp CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGG-HHH
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHH-HHH
Confidence 445899999999999999999999999 99999997532 23344565 34567888 8999999999999653 445
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCC--CCCCCCCCCCCCCCeEEecCCCCCcHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESE--PYNVFQGNLKDAPNILCTPHAAFYSEAS 324 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~E--Pl~~~~~pL~~~pNVilTPHiAg~T~ea 324 (501)
++ ++....++++++|++++.......+++.+.+.. ++.+. -=++-.| ........|+.-..+++||+-+ .+++.
T Consensus 110 vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~-hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~-~~~~~ 185 (314)
T 3ggo_A 110 IA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGG-HPIAGTEKSGVEYSLDNLYEGKKVILTPTKK-TDKKR 185 (314)
T ss_dssp HH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECE-EECCCCCCCSGGGCCTTTTTTCEEEECCCTT-SCHHH
T ss_pred HH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEec-CcccCCcccchhhhhhhhhcCCEEEEEeCCC-CCHHH
Confidence 55 567778999999999988765556667776655 32221 1122222 1112234678888899999843 44554
Q ss_pred HHH
Q psy7383 325 CTE 327 (501)
Q Consensus 325 ~~~ 327 (501)
.+.
T Consensus 186 ~~~ 188 (314)
T 3ggo_A 186 LKL 188 (314)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=121.01 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=104.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc-hhhhhcCce--ecCCHHHHHh-cCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD-GIEKSLGLT--RVYTLQDLLF-QSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~-~~~~~~gv~--~~~sLdelL~-~sDvVil~lPlt~~T~~lI~ 249 (501)
++|+|||+|.||+.+|+.|+..|+ +|++||++... +.....|+. ...+++++++ ++|+|++++|.. .+..++.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~ 80 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK 80 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence 579999999999999999999998 99999987532 223345553 2457888999 999999999965 4556653
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCC--CCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPY--NVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl--~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
+....|+++++|++++++.....+.+.+.+.++.+. ..-++..|.. ....+.|+...+++++||.+.. .+..+
T Consensus 81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~--~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~-~~~~~ 155 (281)
T 2g5c_A 81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KKRLK 155 (281)
T ss_dssp -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEEC--EEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC-HHHHH
T ss_pred -HHHhhCCCCcEEEECCCCcHHHHHHHHHhcccccee--eccccCCccCChhhhhhHHhCCCCEEEecCCCCC-HHHHH
Confidence 466779999999999998876677888888764221 1223333321 1124567888889999997653 44333
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-12 Score=126.21 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=99.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc--
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI-- 248 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI-- 248 (501)
...-++|||||+|.||+.+|+.|...|++|++||++... +...+.|+....++++++++||+|++++|...+++.++
T Consensus 18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~ 97 (310)
T 3doj_A 18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFD 97 (310)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHS
T ss_pred cccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhC
Confidence 345679999999999999999999999999999998643 33345677777899999999999999999877777766
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
.++.+..++++.+|||+++......+.+.+.+.+..+. ++|
T Consensus 98 ~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~v~ 138 (310)
T 3doj_A 98 KGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR--FVE 138 (310)
T ss_dssp TTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred chhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence 24567889999999999999988889999999887665 555
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.30 E-value=8e-12 Score=123.79 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=97.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~ 252 (501)
++|+|||+|.||+.+|+.|...|++|++||++... +...+.++....++++++++||+|++++|...+++.++. ++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 81 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV 81 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence 68999999999999999999999999999998643 333455777778999999999999999997777777762 567
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
+..++++.++||+++....+.+.+.+.+++..+. ++|
T Consensus 82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~ 118 (287)
T 3pef_A 82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR--FLE 118 (287)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE--EEE
Confidence 7889999999999999988999999999887665 555
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.30 E-value=8e-12 Score=124.88 Aligned_cols=114 Identities=20% Similarity=0.257 Sum_probs=98.0
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
.++|||||+|.||+.+|+.|...|++|++||++... +...+.|+....+++++++ ||+|++++|...+++.++ ++.+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~ 92 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA 92 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence 368999999999999999999999999999998654 3344567777789999999 999999999877778777 6788
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
..++++.++||+++....+.+.+.+.+.+..+. ++|.
T Consensus 93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~~ 129 (296)
T 3qha_A 93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIH--IVDA 129 (296)
T ss_dssp TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE--EEEC
T ss_pred HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE--EEeC
Confidence 889999999999999998999999999887665 5553
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=128.19 Aligned_cols=115 Identities=16% Similarity=0.280 Sum_probs=97.9
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcC---CEEEEeccCchhhhhcc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQS---DCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~s---DvVil~lPlt~~T~~lI 248 (501)
+..++|||||+|.||+.+|+.|...|++|++||++... ......|+....+++|+++++ |+|++++|.. .++.++
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl 98 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML 98 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence 56789999999999999999999999999999997543 223345677677999999999 9999999977 777777
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
.+.+..++++.+|||+++....+...+.+.+++..+. ++|
T Consensus 99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~--~vd 138 (358)
T 4e21_A 99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGIT--YVD 138 (358)
T ss_dssp -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCE--EEe
Confidence 5788889999999999999999999999999998886 455
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.8e-12 Score=125.72 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=93.9
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC--C-chhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL--P-DGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~--~-~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI 248 (501)
..-++|||||+|.||+.+|+.|...|+ +|++||++. . .+.....|+....++++++++||+|++++|...... .+
T Consensus 22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~ 100 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALE-VA 100 (312)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHH-HH
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHH-HH
Confidence 345799999999999999999999999 999999963 2 223345677777899999999999999999766544 33
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
++.+..++++++|||+++.......++.+.+.+..+...++|.
T Consensus 101 -~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~ 143 (312)
T 3qsg_A 101 -QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAV 143 (312)
T ss_dssp -HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred -HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 6778889999999999999998999999988876222235663
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.8e-12 Score=124.32 Aligned_cols=115 Identities=16% Similarity=0.173 Sum_probs=96.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~ 252 (501)
++|+|||+|.||+.+|+.|...|++|++||++... +...+.|+....++++++++||+|++++|...+++.++. ++.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l 81 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV 81 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence 47999999999999999999999999999998653 233445777777999999999999999998777777662 456
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+..++++.++||++++...+.+.+.+.+.+..+. ++|.
T Consensus 82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~~~~ 119 (287)
T 3pdu_A 82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR--FLEA 119 (287)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEEC
Confidence 7889999999999999998889999999887665 5553
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.8e-11 Score=116.97 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=102.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhc-------------------------CceecCCHHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSL-------------------------GLTRVYTLQDLLF 229 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~-------------------------gv~~~~sLdelL~ 229 (501)
++|+|||+|.||+.+|+.+...|++|++||++... +..... .+....+++++++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK 84 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence 68999999999999999999999999999987532 111110 1344568889999
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCC
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAP 309 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~p 309 (501)
+||+|++++|.+.+.+..+-++....++++++|++.+.+ +....|.+.+... ....++..| +|.+..+
T Consensus 85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~---------~p~~~~~ 152 (283)
T 4e12_A 85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFA---------NHVWVNN 152 (283)
T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEEC---------SSTTTSC
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccC---------CCcccCc
Confidence 999999999988777777777888899999999965554 4567787777543 233455544 2455677
Q ss_pred CeEEecCCCCCcHHHHHH
Q psy7383 310 NILCTPHAAFYSEASCTE 327 (501)
Q Consensus 310 NVilTPHiAg~T~ea~~~ 327 (501)
.+.++||- ..+++..+.
T Consensus 153 lvevv~~~-~t~~~~~~~ 169 (283)
T 4e12_A 153 TAEVMGTT-KTDPEVYQQ 169 (283)
T ss_dssp EEEEEECT-TSCHHHHHH
T ss_pred eEEEEeCC-CCCHHHHHH
Confidence 88999983 334544443
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=127.37 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=91.5
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHh-cCCEEEEeccCchhhhhccc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLF-QSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~-~sDvVil~lPlt~~T~~lI~ 249 (501)
+|.||||+|+|+|+||+.+|++|+.||++|+++|++... +..+..+.+.+ ++++++. +|||++.| ++.++|+
T Consensus 172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~-----A~~~~I~ 245 (355)
T 1c1d_A 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC-----AMGGVIT 245 (355)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh-----HHHhhcC
Confidence 589999999999999999999999999999999986432 23344666655 7889888 99999753 5789999
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
++.++.|| ..++||.+|+.++++++ .++|+++.|.
T Consensus 246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl 280 (355)
T 1c1d_A 246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL 280 (355)
T ss_dssp HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence 99999998 78999999999999787 5889999886
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.7e-12 Score=124.40 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=95.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCcee-cCCHHHHHhcCCEEEEeccCchhhhhccc--H
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTR-VYTLQDLLFQSDCVSLHCTLNEHNHHLIN--E 250 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~-~~sLdelL~~sDvVil~lPlt~~T~~lI~--~ 250 (501)
.++|+|||+|.||+.+|+.|...|++|++||++... +...+.|... ..+++|++++||+|++++|....++.++. +
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~ 86 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED 86 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence 468999999999999999999999999999987543 2233456665 67899999999999999998777777663 4
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
+.+..++++.++||+++....+.+.+.+.+.+..+. ++|
T Consensus 87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~ 125 (303)
T 3g0o_A 87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN--MLD 125 (303)
T ss_dssp CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe--EEe
Confidence 567789999999999999988889999999887654 555
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-10 Score=120.30 Aligned_cols=192 Identities=16% Similarity=0.189 Sum_probs=115.9
Q ss_pred ccceEEEEeccCCCCHHHHhcCC-CCcEEEEcCccccccchhhhhhcCeEEeec---CCCC-chhhHHHHHHHHHHHHhh
Q psy7383 69 NEAVGALMWHTIILTKEDLEKFK-TLRIIVRIGSGVDNIDVKAAGELGIAVCNV---PGYG-VEEVADTTLCLILNLYRR 143 (501)
Q Consensus 69 ~~a~~vli~~~~~l~~e~l~~~p-~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~---pg~~-a~aVAE~alal~L~l~R~ 143 (501)
.++|.++-... .+.+.++.+. +.-+|...-..-|.=-++++.++||+..-- +... +..+- ++.-|=.++-+
T Consensus 89 ~~adiIlkVk~--p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~--~ls~~s~iAGy 164 (405)
T 4dio_A 89 KTADVILKVRR--PSAQEISGYRSGAVVIAIMDPYGNEEAISAMAGAGLTTFAMELMPRITRAQSMD--VLSSQANLAGY 164 (405)
T ss_dssp GGCSEEEEEEC--CCTTTGGGSCTTCEEEEECCCTTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGC--HHHHHHHHHHH
T ss_pred ccCCEEEEeCC--CChhHHhhcCCCcEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccCccc--eecchhHHHHH
Confidence 34555444432 3455566664 344555544444544467888999998533 2211 11110 11111111111
Q ss_pred HHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-
Q psy7383 144 TYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV- 221 (501)
Q Consensus 144 ~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~- 221 (501)
..-......-++.+ + ....+...+.+.+|+|+|+|.||..+|+.|+++|++|++||++... +..+++|.+.+
T Consensus 165 ~Av~~aa~~l~~~~-~-----~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~ 238 (405)
T 4dio_A 165 QAVIDAAYEYDRAL-P-----MMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIA 238 (405)
T ss_dssp HHHHHHHHHCSSCS-S-----CEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECC
T ss_pred HHHHHHHHHhHhhh-c-----hhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceee
Confidence 11111111111111 1 0111223588999999999999999999999999999999998753 23333444321
Q ss_pred ----------------------------CCHHHHHhcCCEEEEec--cCchhhhhcccHHHHhcCCCCcEEEEcC--CCC
Q psy7383 222 ----------------------------YTLQDLLFQSDCVSLHC--TLNEHNHHLINEFTIKQMRPGAFLVNTA--RGG 269 (501)
Q Consensus 222 ----------------------------~sLdelL~~sDvVil~l--Plt~~T~~lI~~~~l~~MK~gAilINva--RG~ 269 (501)
.+++++++++|+||.++ |.. .+..+|+++.++.||+|++|||++ +|.
T Consensus 239 ~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG 317 (405)
T 4dio_A 239 VEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGG 317 (405)
T ss_dssp CCC-----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTC
T ss_pred cccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCC
Confidence 25788899999999875 433 467889999999999999999998 665
Q ss_pred cc
Q psy7383 270 LV 271 (501)
Q Consensus 270 vV 271 (501)
.+
T Consensus 318 ~~ 319 (405)
T 4dio_A 318 NI 319 (405)
T ss_dssp SB
T ss_pred Cc
Confidence 44
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-11 Score=117.94 Aligned_cols=140 Identities=16% Similarity=0.206 Sum_probs=100.0
Q ss_pred CeEEeeccchHHHHHHHHHHhC--CCEEEEECCCCCc-hhhhhcCc--eecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--GFNVIFYDPYLPD-GIEKSLGL--TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G~~Vi~~dr~~~~-~~~~~~gv--~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++|+|||+|.||+.+|+.|... |++|++||++... ......|. ....++++++.++|+|++++|... .+.++ +
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~-~ 84 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFI-K 84 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHH-H
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHH-H
Confidence 6899999999999999999876 7899999987532 22223454 234578888999999999999543 35555 3
Q ss_pred HHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCC------CCCCCCCCCCCCCCCeEEecCCCCC
Q psy7383 251 FTIKQ-MRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHES------EPYNVFQGNLKDAPNILCTPHAAFY 320 (501)
Q Consensus 251 ~~l~~-MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~------EPl~~~~~pL~~~pNVilTPHiAg~ 320 (501)
+.... ++++.++|++++......+.+.+.+.+..+. +++.... .|... ...|+.-.+++++||.+..
T Consensus 85 ~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a-~~~l~~g~~~~~~~~~~~~ 158 (290)
T 3b1f_A 85 ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAA-NVNLFENAYYIFSPSCLTK 158 (290)
T ss_dssp HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSC-CTTTTTTSEEEEEECTTCC
T ss_pred HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHh-hHHHhCCCeEEEecCCCCC
Confidence 45667 8999999999988776667888877752232 3442111 23222 3567788889999997653
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.6e-10 Score=115.80 Aligned_cols=181 Identities=16% Similarity=0.168 Sum_probs=111.8
Q ss_pred CCCHHHHhcCCC-CcEEEEcCccccccchhhhhhcCeEEeec---CCCC-chhhHHHHHHHHHHHHhhHHHHHHHHHcCC
Q psy7383 81 ILTKEDLEKFKT-LRIIVRIGSGVDNIDVKAAGELGIAVCNV---PGYG-VEEVADTTLCLILNLYRRTYWLANMVREGK 155 (501)
Q Consensus 81 ~l~~e~l~~~p~-LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~---pg~~-a~aVAE~alal~L~l~R~~~~~~~~~~~g~ 155 (501)
..+.+.++.+.. ..+|...-.-.|.=-++++.++||+..-- +... +.++ -++.-|=.++-+..-......-++
T Consensus 93 ~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l--~~l~~~s~iAGy~Av~~aa~~l~~ 170 (381)
T 3p2y_A 93 PPTSDEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTM--DALSSQANVAGYKAVLLGASLSTR 170 (381)
T ss_dssp CCCHHHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGG--CHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCChhHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccc--eeecchhHHHHHHHHHHHHHHhhh
Confidence 356777877754 44444444444544467888999998543 2211 1111 111111111111111111111111
Q ss_pred ccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-------------
Q psy7383 156 KFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV------------- 221 (501)
Q Consensus 156 w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~------------- 221 (501)
.+ + ....+...+.+++|+|||+|.||..+|+.|+++|++|++||++... +..+++|.+.+
T Consensus 171 ~~-~-----~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya 244 (381)
T 3p2y_A 171 FV-P-----MLTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYA 244 (381)
T ss_dssp CS-S-----CEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC----------
T ss_pred hh-h-----hhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccch
Confidence 11 1 0112234589999999999999999999999999999999998643 33344554432
Q ss_pred ------------CCHHHHHhcCCEEEEec--cCchhhhhcccHHHHhcCCCCcEEEEcC--CCCc
Q psy7383 222 ------------YTLQDLLFQSDCVSLHC--TLNEHNHHLINEFTIKQMRPGAFLVNTA--RGGL 270 (501)
Q Consensus 222 ------------~sLdelL~~sDvVil~l--Plt~~T~~lI~~~~l~~MK~gAilINva--RG~v 270 (501)
.+++++++++|+||.++ |. ..+..+|+++.++.||+|++|||++ +|..
T Consensus 245 ~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~ 308 (381)
T 3p2y_A 245 RELSEAERAQQQQALEDAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGN 308 (381)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCS
T ss_pred hhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCc
Confidence 24678899999999875 43 2456789999999999999999998 5543
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=117.96 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=91.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCC------c--hhhhhcCceecC-CHHHHHhcCCEEEEeccCchhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLP------D--GIEKSLGLTRVY-TLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~------~--~~~~~~gv~~~~-sLdelL~~sDvVil~lPlt~~T~ 245 (501)
++|||||+|.||..+|+.|...| ++|++||++.. . +.....|+ .. ++++++++||+|++++|......
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~~ 102 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATKA 102 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHHH
T ss_pred CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHHH
Confidence 68999999999999999999999 99999998752 1 11123455 55 78999999999999999776655
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
.+ ++.+..++++.+|||+++....+.+.+.+.+++..+. ++|
T Consensus 103 ~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~--~~d 144 (317)
T 4ezb_A 103 VA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS--FVE 144 (317)
T ss_dssp HH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCE--EEE
T ss_pred HH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEe
Confidence 44 6788889999999999999988999999999887664 456
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.6e-11 Score=121.63 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=94.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhc----CCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQ----SDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~----sDvVil~lPlt~~T~~lI~~ 250 (501)
++|+|||+|.||+.+|+.|+..|++|++||++... ....+.|+....++++++++ ||+|++++|. ..+..++.
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~- 86 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLD- 86 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHH-
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHH-
Confidence 57999999999999999999999999999987532 33455677666788888765 7999999995 45666662
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec---CCCC--CCCCCCCCCCCCCCeEEecCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV---HESE--PYNVFQGNLKDAPNILCTPHAA 318 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV---fe~E--Pl~~~~~pL~~~pNVilTPHiA 318 (501)
.+..++++++++|++.-+....+++.+.+. ... +++. +-.| .....+..|+...++++||+-.
T Consensus 87 -~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~--~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~ 154 (341)
T 3ktd_A 87 -AVHTHAPNNGFTDVVSVKTAVYDAVKARNM--QHR--YVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQL 154 (341)
T ss_dssp -HHHHHCTTCCEEECCSCSHHHHHHHHHTTC--GGG--EECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGG
T ss_pred -HHHccCCCCEEEEcCCCChHHHHHHHHhCC--CCc--EecCCccccccccchhhhhhHHhcCCeEEEEeCCC
Confidence 344459999999998765433334443332 122 3332 2222 1111234688888899999843
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=115.63 Aligned_cols=121 Identities=15% Similarity=0.065 Sum_probs=88.4
Q ss_pred CCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
.++|+||| +|.||+.+|+.|+..|++|++||++.. .++++++++||+|++++|... +..++ ++..
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~------------~~~~~~~~~aDvVilavp~~~-~~~vl-~~l~ 86 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW------------AVAESILANADVVIVSVPINL-TLETI-ERLK 86 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG------------GGHHHHHTTCSEEEECSCGGG-HHHHH-HHHG
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc------------cCHHHHhcCCCEEEEeCCHHH-HHHHH-HHHH
Confidence 46899999 999999999999999999999997542 156788999999999999654 66666 3566
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCC
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHA 317 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHi 317 (501)
..++++++|+++++......+.+.+.+ .. ++....|......+++...++++|||-
T Consensus 87 ~~l~~~~iv~~~~svk~~~~~~~~~~~---~~-----~~v~~hP~~g~~~~~~~g~~~~l~~~~ 142 (298)
T 2pv7_A 87 PYLTENMLLADLTSVKREPLAKMLEVH---TG-----AVLGLHPMFGADIASMAKQVVVRCDGR 142 (298)
T ss_dssp GGCCTTSEEEECCSCCHHHHHHHHHHC---SS-----EEEEEEECSCTTCSCCTTCEEEEEEEE
T ss_pred hhcCCCcEEEECCCCCcHHHHHHHHhc---CC-----CEEeeCCCCCCCchhhcCCeEEEecCC
Confidence 779999999999886654444454442 11 222333432112356666789999975
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=114.28 Aligned_cols=111 Identities=17% Similarity=0.244 Sum_probs=91.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~ 252 (501)
++|+|||+|.||+.+|+.|...|++|.+||++... ......|+....+++++++++|+|++++|...+++.++. ++.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l 85 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 85 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence 48999999999999999999999999999987532 222334777667899999999999999997777777763 356
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
...++++.+||+++.+...+.+.|.+.+.+..+.
T Consensus 86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~ 119 (299)
T 1vpd_A 86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE 119 (299)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence 6789999999999999877788899998875543
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=4.6e-11 Score=122.06 Aligned_cols=143 Identities=20% Similarity=0.110 Sum_probs=99.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI 248 (501)
..|.+++|+|||+|.||+.+|+.|+..|++|++||++... ......|+... ++++++++||+|++++|... ...++
T Consensus 12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~-~~~v~ 89 (338)
T 1np3_A 12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEF-QGRLY 89 (338)
T ss_dssp HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHH-HHHHH
T ss_pred chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHH-HHHHH
Confidence 3588999999999999999999999999999999998653 33445677655 89999999999999999654 35666
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCC---CCCC---CCCeEEecCCCCCcH
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQG---NLKD---APNILCTPHAAFYSE 322 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~---pL~~---~pNVilTPHiAg~T~ 322 (501)
.++....|+++++||+++ | +.. ..+.+. ....+||+...|..+ .+ .|+. -.++++|||.. .+.
T Consensus 90 ~~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp-~~a~~~l~~~G~g~~~ii~~~~~-~~~ 158 (338)
T 1np3_A 90 KEEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAP-GHTVRSEFVKGGGIPDLIAIYQD-ASG 158 (338)
T ss_dssp HHHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSC-SHHHHHHHHTTCCCCEEEEEEEC-SSS
T ss_pred HHHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCC-chhHHHHHhccCCCeEEEEecCC-CCH
Confidence 546667899999999874 3 332 222111 122346666566433 22 2333 56789999964 344
Q ss_pred HHHH
Q psy7383 323 ASCT 326 (501)
Q Consensus 323 ea~~ 326 (501)
++.+
T Consensus 159 ~a~~ 162 (338)
T 1np3_A 159 NAKN 162 (338)
T ss_dssp CHHH
T ss_pred HHHH
Confidence 4433
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-10 Score=122.03 Aligned_cols=113 Identities=15% Similarity=0.249 Sum_probs=94.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhc---C--ceecCCHHHHHh---cCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSL---G--LTRVYTLQDLLF---QSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~---g--v~~~~sLdelL~---~sDvVil~lPlt~~T~~ 246 (501)
++|||||+|.||+.+|++|...|++|++||++.... ...+. + +....+++|+++ ++|+|++++|....++.
T Consensus 5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~ 84 (484)
T 4gwg_A 5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDD 84 (484)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHH
T ss_pred CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHHH
Confidence 579999999999999999999999999999986432 11111 2 333568999887 59999999998878888
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
++ ++.+..|++|.+|||++++...+...+.+.|++..+. ++|
T Consensus 85 vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~--fvd 126 (484)
T 4gwg_A 85 FI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGIL--FVG 126 (484)
T ss_dssp HH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred HH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccc--ccc
Confidence 77 6788899999999999999999999999999988776 445
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=113.30 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=90.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~ 252 (501)
++|+|||+|.||+.+|+.|...|++|.+||++... ......|+....++++++.++|+|++++|...+++.++. ++.
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 84 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV 84 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence 68999999999999999999999999999987532 222234666667899999999999999997777777774 356
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
...++++.+||+++++...+.+.|.+.+.+..+.
T Consensus 85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~ 118 (301)
T 3cky_A 85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGID 118 (301)
T ss_dssp HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCE
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence 6789999999999998766788898888875443
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-10 Score=112.69 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=88.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH--HH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE--FT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~--~~ 252 (501)
++|+|||+|.||+.+|+.|...|++|++|| +... ......|+....+++++++++|+|++++|...+++.++.. +.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 82 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC 82 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence 589999999999999999999999999999 6543 2233346665668999999999999999977666666642 45
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
...++++.+||+++.+...+.+.|.+.+.+..+
T Consensus 83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~ 115 (295)
T 1yb4_A 83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGA 115 (295)
T ss_dssp TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 567899999999999987888899999887543
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=113.82 Aligned_cols=160 Identities=13% Similarity=0.165 Sum_probs=115.0
Q ss_pred CCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCC
Q psy7383 80 IILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTG 159 (501)
Q Consensus 80 ~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~ 159 (501)
.++.++++..+++|.-++....|+|.|+. +.|- ..|+|.+. .+++.++.|. +
T Consensus 61 ~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g~----~~g~ntd~-----~g~~~~l~~~----------~----- 112 (263)
T 2d5c_A 61 LPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEGR----LFGFNTDA-----PGFLEALKAG----------G----- 112 (263)
T ss_dssp TTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETTE----EEEECCHH-----HHHHHHHHHT----------T-----
T ss_pred ccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCCe----EEEeCCCH-----HHHHHHHHHh----------C-----
Confidence 46788899999999999999999999975 3442 23445443 2333333221 1
Q ss_pred chhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEe
Q psy7383 160 PEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 160 ~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~ 237 (501)
.+++| +|+|||+|.||+.+++.|..+|++|.+|||+... ...+..+.. ..+++++ +++|+|+++
T Consensus 113 -----------~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~ 178 (263)
T 2d5c_A 113 -----------IPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNA 178 (263)
T ss_dssp -----------CCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEEC
T ss_pred -----------CCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEc
Confidence 24789 9999999999999999999999999999987532 223334544 4578888 999999999
Q ss_pred ccCch--hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 238 CTLNE--HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 238 lPlt~--~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+|... ++...+. ++.+++++++||++.+. .+. .|.+++++..+.
T Consensus 179 tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p-~~t-~l~~~a~~~g~~ 224 (263)
T 2d5c_A 179 TRVGLEDPSASPLP---AELFPEEGAAVDLVYRP-LWT-RFLREAKAKGLK 224 (263)
T ss_dssp SSTTTTCTTCCSSC---GGGSCSSSEEEESCCSS-SSC-HHHHHHHHTTCE
T ss_pred cCCCCCCCCCCCCC---HHHcCCCCEEEEeecCC-ccc-HHHHHHHHCcCE
Confidence 99762 3334453 46789999999999874 344 477777765543
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-10 Score=121.54 Aligned_cols=113 Identities=14% Similarity=0.240 Sum_probs=93.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhc---CceecCCHHHHHhc---CCEEEEeccCchhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSL---GLTRVYTLQDLLFQ---SDCVSLHCTLNEHN 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~---gv~~~~sLdelL~~---sDvVil~lPlt~~T 244 (501)
...++|||||+|.||+.+|++|...|++|.+|||+... ...+.. ++....+++++++. +|+|++++|....+
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 92 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT 92 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence 56678999999999999999999999999999997543 122222 66666789999887 99999999987788
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+.++ ++....++++.+|||++.+...+...+.+.|.+..+.
T Consensus 93 ~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~ 133 (480)
T 2zyd_A 93 DAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133 (480)
T ss_dssp HHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence 8888 4677889999999999999888888899989876554
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-10 Score=112.02 Aligned_cols=108 Identities=18% Similarity=0.265 Sum_probs=86.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH--HH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE--FT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~--~~ 252 (501)
++|+|||+|.||+.+|+.|...|++|++||++... ......|+....+++++++++|+|++++|....++.++.. ..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~ 80 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI 80 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence 47999999999999999999999999999987643 2233456766678999999999999999977777776643 24
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+..++++.+||+++...+.+.+.+.+.+.+.
T Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~ 111 (296)
T 2gf2_A 81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKM 111 (296)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 5678999999998887776677777777653
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-10 Score=112.53 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=68.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc----------------hhhhhcCceecCCHHHHHhcCCEE
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD----------------GIEKSLGLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~----------------~~~~~~gv~~~~sLdelL~~sDvV 234 (501)
.++.+++|||||+|.||+.+|+.|...|++|++|||+... ......+.....+++|++++||+|
T Consensus 15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvV 94 (245)
T 3dtt_A 15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELV 94 (245)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEE
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEE
Confidence 4689999999999999999999999999999999987543 111123444456889999999999
Q ss_pred EEeccCchhhhhcccHHH-HhcCCCCcEEEEcCC
Q psy7383 235 SLHCTLNEHNHHLINEFT-IKQMRPGAFLVNTAR 267 (501)
Q Consensus 235 il~lPlt~~T~~lI~~~~-l~~MK~gAilINvaR 267 (501)
++++|...... .+. +. ...+ ++.++|+++-
T Consensus 95 ilavp~~~~~~-~~~-~i~~~~l-~g~ivi~~s~ 125 (245)
T 3dtt_A 95 VNATEGASSIA-ALT-AAGAENL-AGKILVDIAN 125 (245)
T ss_dssp EECSCGGGHHH-HHH-HHCHHHH-TTSEEEECCC
T ss_pred EEccCcHHHHH-HHH-Hhhhhhc-CCCEEEECCC
Confidence 99999664433 332 22 2334 8999999994
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-09 Score=105.38 Aligned_cols=142 Identities=16% Similarity=0.106 Sum_probs=96.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCce--ecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLT--RVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~--~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
++|+|||+|.||+.+|+.|...|++|++||++... ......|+. ...+++++ .++|+|++++|. ..+..++ ++.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~-~~l 77 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL-EKL 77 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH-HHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH-HHH
Confidence 47999999999999999999999999999987532 222334542 34578888 999999999994 3455555 356
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC--CC-CCCCCCCCCCCCCCCeEEecCCCCCcHHHH
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH--ES-EPYNVFQGNLKDAPNILCTPHAAFYSEASC 325 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf--e~-EPl~~~~~pL~~~pNVilTPHiAg~T~ea~ 325 (501)
...+++++++|+++.......+.+.+.+. ++.+. .-++ +. .|... .+.++....++++|+-+. +.+..
T Consensus 78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a-~~~~~~g~~~~~~~~~~~-~~~~~ 148 (279)
T 2f1k_A 78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGA-EENLFVNAPYVLTPTEYT-DPEQL 148 (279)
T ss_dssp GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGC-CTTTTTTCEEEEEECTTC-CHHHH
T ss_pred HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHH-hHHHhCCCcEEEecCCCC-CHHHH
Confidence 67789999999998766655666655543 33321 2233 11 12221 335667778999997543 34433
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=7e-10 Score=118.82 Aligned_cols=93 Identities=25% Similarity=0.250 Sum_probs=78.6
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+|.||+++|+|+|.||+.+|++|+++|++|+++|++... ......++. +.++++++..+|+|+.+. .+.++|+.
T Consensus 262 ~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~d-v~~lee~~~~aDvVi~at----G~~~vl~~ 336 (488)
T 3ond_A 262 MIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQ-VLTLEDVVSEADIFVTTT----GNKDIIML 336 (488)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGTTTTCSEEEECS----SCSCSBCH
T ss_pred cccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCc-cCCHHHHHHhcCEEEeCC----CChhhhhH
Confidence 589999999999999999999999999999999987533 223344554 458899999999998753 46789999
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~ 269 (501)
+.|+.||++++|+|++|+.
T Consensus 337 e~l~~mk~gaiVvNaG~~~ 355 (488)
T 3ond_A 337 DHMKKMKNNAIVCNIGHFD 355 (488)
T ss_dssp HHHTTSCTTEEEEESSSTT
T ss_pred HHHHhcCCCeEEEEcCCCC
Confidence 9999999999999999983
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-10 Score=111.74 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=90.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH--HH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE--FT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~--~~ 252 (501)
++|+|||+|.||+.+|+.|...|++|++||++... ....+.|+....+++++++++|+|++++|....++.++.. ..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~ 110 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV 110 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence 68999999999999999999999999999987543 2233456666668899999999999999977677766543 24
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD 291 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD 291 (501)
+..++++.++|+++++...+.+.|.+.+....+. ++|
T Consensus 111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~--~v~ 147 (316)
T 2uyy_A 111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR--FLE 147 (316)
T ss_dssp GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEE
Confidence 5778999999999998777788888888665443 444
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.8e-10 Score=110.69 Aligned_cols=107 Identities=13% Similarity=0.186 Sum_probs=86.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
++|+|||+|.||+.+|+.|.. |++|.+||++... ......|+.... +++++.++|+|++++|....++.++ ++...
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~ 78 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP 78 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence 479999999999999999999 9999999987643 222223454444 7788899999999999776677666 55667
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 255 QMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 255 ~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
.++++.++|+++.+...+.+.|.+.+.+..+
T Consensus 79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~ 109 (289)
T 2cvz_A 79 YLREGTYWVDATSGEPEASRRLAERLREKGV 109 (289)
T ss_dssp TCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred hCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 8999999999999888888899999887543
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.5e-10 Score=119.08 Aligned_cols=111 Identities=18% Similarity=0.282 Sum_probs=92.8
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhh-----cCceecCCHHHHHhc---CCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKS-----LGLTRVYTLQDLLFQ---SDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~-----~gv~~~~sLdelL~~---sDvVil~lPlt~~T~ 245 (501)
.++|||||+|.||+.+|+.|...|++|.+|||+.... .... .++....+++++++. +|+|++++|....++
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 89 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD 89 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence 3689999999999999999999999999999986432 1222 356666789999887 999999999877888
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
.++ ++....+++|.+||+++.+...+...+.+.+.+..+.
T Consensus 90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~ 129 (497)
T 2p4q_A 90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL 129 (497)
T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence 888 5677889999999999999888888898888876554
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.95 E-value=6.2e-10 Score=110.37 Aligned_cols=167 Identities=13% Similarity=0.178 Sum_probs=113.7
Q ss_pred ceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHH
Q psy7383 71 AVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANM 150 (501)
Q Consensus 71 a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~ 150 (501)
..++.+. .++..+++..+..+.-++....++|.|+. +.|-. .|+|++.. +++.++.|.
T Consensus 66 ~~G~nvt--iP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~----~g~nTd~~-----G~~~~l~~~------- 123 (275)
T 2hk9_A 66 VKGINVT--VPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKA----YGYNTDWI-----GFLKSLKSL------- 123 (275)
T ss_dssp CCEEEEC--TTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEECCHHH-----HHHHHHHHH-------
T ss_pred CCEEEEC--ccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEE----EeecCCHH-----HHHHHHHHh-------
Confidence 4454443 56777888888888888888888888764 34422 24454332 333333220
Q ss_pred HHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHH
Q psy7383 151 VREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLL 228 (501)
Q Consensus 151 ~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL 228 (501)
+ .++.+++|+|||+|.||+.+++.|...|++|.+|||+... ...+..++....++++++
T Consensus 124 ---~----------------~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~ 184 (275)
T 2hk9_A 124 ---I----------------PEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVI 184 (275)
T ss_dssp ---C----------------TTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTG
T ss_pred ---C----------------CCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhh
Confidence 1 1377899999999999999999999999999999997532 223344555445788899
Q ss_pred hcCCEEEEeccCch--hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 229 FQSDCVSLHCTLNE--HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 229 ~~sDvVil~lPlt~--~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
+++|+|++++|... ++...++ +..++++.+++|++. . ...|++..++..+
T Consensus 185 ~~aDiVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~-~t~ll~~a~~~g~ 236 (275)
T 2hk9_A 185 DKVQVIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---K-ETKLLKKAKEKGA 236 (275)
T ss_dssp GGCSEEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---S-CCHHHHHHHHTTC
T ss_pred cCCCEEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---C-hHHHHHHHHHCcC
Confidence 99999999999754 2223453 466899999999988 3 3345555554433
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.5e-11 Score=111.82 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=74.6
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
+.+++|+|||+|.||+.+|+.|..+|++|++|||+.........++... +++++++++|+|++++|.. +++.++ +
T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~-~~~~v~--~- 91 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVL-CYSEAASRSDVIVLAVHRE-HYDFLA--E- 91 (201)
Confidence 6778999999999999999999999999999998754222222355443 7888999999999999964 567766 2
Q ss_pred HhcCCCCcEEEEcCCCCc
Q psy7383 253 IKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 253 l~~MK~gAilINvaRG~v 270 (501)
+..++++++|||+++|-.
T Consensus 92 l~~~~~~~ivI~~~~G~~ 109 (201)
T 2yjz_A 92 LADSLKGRVLIDVSNNQK 109 (201)
Confidence 455778999999999964
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-09 Score=114.15 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=90.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhh-----cCceecCCHHHHHh---cCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKS-----LGLTRVYTLQDLLF---QSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~-----~gv~~~~sLdelL~---~sDvVil~lPlt~~T~~ 246 (501)
++|||||+|.||+.+|+.|...|++|.+|||+... +...+ .++....+++++++ ++|+|++++|....++.
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~ 82 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence 47999999999999999999999999999997643 11222 45666678999875 89999999998777888
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
++ ++....++++.+||+++.+...+...+.+.+.+..+.
T Consensus 83 vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~ 121 (482)
T 2pgd_A 83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL 121 (482)
T ss_dssp HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred HH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence 77 4677789999999999999887888888888875554
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-09 Score=114.42 Aligned_cols=110 Identities=19% Similarity=0.292 Sum_probs=90.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhc---CceecCCHHHHHhc---CCEEEEeccCchhhhhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSL---GLTRVYTLQDLLFQ---SDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~---gv~~~~sLdelL~~---sDvVil~lPlt~~T~~l 247 (501)
++|||||+|.||+.+|+.|...|++|.+|||+... ...+.. ++....+++++++. +|+|++++|....++.+
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v 85 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT 85 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence 57999999999999999999999999999987542 122222 56666789999886 99999999987777777
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+ ++....+++|.+||+++.+...+...+.+.+.+..+.
T Consensus 86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~ 123 (474)
T 2iz1_A 86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN 123 (474)
T ss_dssp H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence 7 4667789999999999999877888888888775554
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-09 Score=104.61 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=80.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch---hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG---IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~---~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
++|+|||+|.||+.+|+.|...|++|++||+....+ .....|+. .++++++.++|+|++++|.....+.+ .+.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~ 76 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA 76 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence 479999999999999999999999999998842221 12234655 57889999999999999976655554 466
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+..+++ ++|+++.+...+.+.|.+.+.+.
T Consensus 77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~ 105 (264)
T 1i36_A 77 GRHVRG--IYVDINNISPETVRMASSLIEKG 105 (264)
T ss_dssp HTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred HHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence 677877 99999988777778888887664
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.89 E-value=4.3e-09 Score=112.49 Aligned_cols=110 Identities=23% Similarity=0.321 Sum_probs=89.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcC-------ceecCCHHHHHhc---CCEEEEeccCchh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLG-------LTRVYTLQDLLFQ---SDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~g-------v~~~~sLdelL~~---sDvVil~lPlt~~ 243 (501)
++|||||+|.||+.+|+.|...|++|.+|||+... ...+..+ +....++++++.. +|+|++++|....
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 47999999999999999999999999999987532 1222224 5556689998874 9999999998777
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
++.++ ++....++++.+||+++.+...+.+.+.+.+.+..+.
T Consensus 82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~ 123 (478)
T 1pgj_A 82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR 123 (478)
T ss_dssp HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence 77777 4677789999999999999877888899999876554
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.2e-09 Score=104.45 Aligned_cols=137 Identities=15% Similarity=0.095 Sum_probs=90.9
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhc-------CceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSL-------GLTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~-------gv~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
-..|+|||||+|.||..||+.|. .|++|++||++... +...+. ++....++++ +++||+|+.++|...+.
T Consensus 10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v 87 (293)
T 1zej_A 10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT 87 (293)
T ss_dssp --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence 35789999999999999999999 99999999987532 111222 4555567776 89999999999998887
Q ss_pred hhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHH
Q psy7383 245 HHLINEFTIKQMRPGAFLV-NTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEA 323 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilI-NvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~e 323 (501)
+..+-.+ +..+ ++++|+ |+|.-. ...+.+.++ ......++..|. |.. ..+-|.++++-. .+++
T Consensus 88 k~~l~~~-l~~~-~~~IlasntSti~---~~~~a~~~~-~~~r~~G~Hf~~--Pv~-------~~~lveiv~g~~-t~~~ 151 (293)
T 1zej_A 88 KVEVLRE-VERL-TNAPLCSNTSVIS---VDDIAERLD-SPSRFLGVHWMN--PPH-------VMPLVEIVISRF-TDSK 151 (293)
T ss_dssp HHHHHHH-HHTT-CCSCEEECCSSSC---HHHHHTTSS-CGGGEEEEEECS--STT-------TCCEEEEEECTT-CCHH
T ss_pred HHHHHHH-HhcC-CCCEEEEECCCcC---HHHHHHHhh-cccceEeEEecC--ccc-------cCCEEEEECCCC-CCHH
Confidence 7766444 5667 999985 787743 344544443 222334555554 432 234566777532 2344
Q ss_pred HHHH
Q psy7383 324 SCTE 327 (501)
Q Consensus 324 a~~~ 327 (501)
..++
T Consensus 152 ~~~~ 155 (293)
T 1zej_A 152 TVAF 155 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=4e-09 Score=109.36 Aligned_cols=107 Identities=19% Similarity=0.251 Sum_probs=85.4
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHh-cCCEEEEeccCchhhhhcc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLF-QSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~-~sDvVil~lPlt~~T~~lI 248 (501)
+|.||||+|+|+|+||+.+|++|..+|++|+++|+.... ...+..+.+.+ +.++++. +||+++.|. +.++|
T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a-----~~~~I 243 (364)
T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCA-----LGAVL 243 (364)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECS-----CSCCB
T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccc-----hHHHh
Confidence 589999999999999999999999999999999986532 12333466554 6777776 999998773 67799
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+.+.++.|+ ..++++.+++.+.+++ ..+.|+++.|.
T Consensus 244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~ 279 (364)
T 1leh_A 244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV 279 (364)
T ss_dssp STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence 988899984 5789999999887755 55677777764
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-09 Score=103.42 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=78.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI 248 (501)
++.+++|+|||+|.||+.+|+.|...|++ |.+||++... ...+..++....+++++++++|+|++++|.. ..+.++
T Consensus 7 ~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~ 85 (266)
T 3d1l_A 7 SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELL 85 (266)
T ss_dssp CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHH
Confidence 35678999999999999999999999998 8999987532 2223346766678889999999999999965 345555
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCH
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde 273 (501)
++....++++++||+++.|...+.
T Consensus 86 -~~l~~~~~~~~ivv~~s~~~~~~~ 109 (266)
T 3d1l_A 86 -QGIVEGKREEALMVHTAGSIPMNV 109 (266)
T ss_dssp -HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred -HHHHhhcCCCcEEEECCCCCchHH
Confidence 355667889999999999866543
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-09 Score=112.69 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=76.3
Q ss_pred ccccC-CeEEeeccchHHHHHHHHHHhC------CCEEEEECCCCC--chhhhhcCcee----cCCHHHHHhcCCEEEEe
Q psy7383 171 ARIRG-DTLGIVGLGRIGSAVALRAKAF------GFNVIFYDPYLP--DGIEKSLGLTR----VYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 171 ~~L~g-ktVGIVGlG~IG~~iA~~L~af------G~~Vi~~dr~~~--~~~~~~~gv~~----~~sLdelL~~sDvVil~ 237 (501)
..|+| |||||||+|.||.++|+.|+.. |++|+++++... .......|+.. ..+++|++++||+|+++
T Consensus 49 ~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILa 128 (525)
T 3fr7_A 49 EAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLL 128 (525)
T ss_dssp HHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEEC
T ss_pred HHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEEC
Confidence 45899 9999999999999999999988 999987766532 23445567653 24789999999999999
Q ss_pred ccCchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 238 lPlt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+|..... .++. +.+..||+|++ |-++.|
T Consensus 129 VP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaG 156 (525)
T 3fr7_A 129 ISDAAQA-DNYE-KIFSHMKPNSI-LGLSHG 156 (525)
T ss_dssp SCHHHHH-HHHH-HHHHHSCTTCE-EEESSS
T ss_pred CChHHHH-HHHH-HHHHhcCCCCe-EEEeCC
Confidence 9986654 4665 78999999998 567777
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5.7e-09 Score=110.96 Aligned_cols=135 Identities=11% Similarity=0.099 Sum_probs=93.9
Q ss_pred CeEEeeccchHHHHHHHHHHhC--CCEEEEECCCCCchhh----------------hh----cCceecCCHHHHHhcCCE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--GFNVIFYDPYLPDGIE----------------KS----LGLTRVYTLQDLLFQSDC 233 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G~~Vi~~dr~~~~~~~----------------~~----~gv~~~~sLdelL~~sDv 233 (501)
++|+|||+|.||..+|..|... |++|++||++...... .. .++....++++++++||+
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv 85 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL 85 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence 5899999999999999999888 8999999987432110 00 234445678889999999
Q ss_pred EEEeccCchhhhh-----------cc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEe---cCCCCC
Q psy7383 234 VSLHCTLNEHNHH-----------LI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALD---VHESEP 297 (501)
Q Consensus 234 Vil~lPlt~~T~~-----------lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLD---Vfe~EP 297 (501)
|++++|...+..+ +. .++..+.|++++++|++++..+-..+.+.+.+++.... .+| ++..|.
T Consensus 86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~Pe~ 163 (467)
T 2q3e_A 86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNPEF 163 (467)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECCCC
T ss_pred EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCHHH
Confidence 9999985433222 11 23456678999999999998887788888888876422 233 355665
Q ss_pred CCCCCC---CCCCCCCeEE
Q psy7383 298 YNVFQG---NLKDAPNILC 313 (501)
Q Consensus 298 l~~~~~---pL~~~pNVil 313 (501)
..+ .. .+...++|++
T Consensus 164 ~~~-G~~~~d~~~~~rivv 181 (467)
T 2q3e_A 164 LAE-GTAIKDLKNPDRVLI 181 (467)
T ss_dssp CCT-TSHHHHHHSCSCEEE
T ss_pred hhc-ccchhhccCCCEEEE
Confidence 543 22 2345556654
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.79 E-value=9e-09 Score=99.75 Aligned_cols=103 Identities=18% Similarity=0.246 Sum_probs=79.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC----EEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF----NVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~----~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
++|+|||+|.||+.+++.|...|+ +|++|||+... ...+..|+....+++++++++|+|++++|. ...+.++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~- 80 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII- 80 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence 589999999999999999999998 99999997543 222345777777899999999999999973 3445555
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
++....++++.++|.+.-| +..+.|.+.+..
T Consensus 81 ~~l~~~l~~~~~vvs~~~g--i~~~~l~~~~~~ 111 (247)
T 3gt0_A 81 NEIKEIIKNDAIIVTIAAG--KSIESTENAFNK 111 (247)
T ss_dssp ---CCSSCTTCEEEECSCC--SCHHHHHHHHCS
T ss_pred HHHHhhcCCCCEEEEecCC--CCHHHHHHHhCC
Confidence 4566678899999988776 556677776654
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-08 Score=101.68 Aligned_cols=106 Identities=17% Similarity=0.244 Sum_probs=82.2
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCC----CEEEEECCCCC--c-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLP--D-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~--~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
...++|+|||+|.||..+|+.|...| .+|++|||+.. . +.....|+....+..+++++||+|++++| ....+
T Consensus 20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~ 98 (322)
T 2izz_A 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP 98 (322)
T ss_dssp --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence 44568999999999999999999999 79999999864 2 22334577766688899999999999999 45566
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
.++ .+....++++.++|+++-| +..+.|.+.+.+
T Consensus 99 ~vl-~~l~~~l~~~~ivvs~s~g--i~~~~l~~~l~~ 132 (322)
T 2izz_A 99 FIL-DEIGADIEDRHIVVSCAAG--VTISSIEKKLSA 132 (322)
T ss_dssp HHH-HHHGGGCCTTCEEEECCTT--CCHHHHHHHHHT
T ss_pred HHH-HHHHhhcCCCCEEEEeCCC--CCHHHHHHHHhh
Confidence 655 3555678899999999877 445567777765
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=90.45 Aligned_cols=90 Identities=13% Similarity=0.269 Sum_probs=71.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCce--ecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLT--RVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~--~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
.+++|+|||+|.||+.+++.|+.+|++|.+||++... ...+..+.. ...++++++.++|+|++++|.+ ..++.
T Consensus 20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~ 96 (144)
T 3oj0_A 20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVE 96 (144)
T ss_dssp CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBC
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEee
Confidence 3889999999999999999999999999999987543 223344443 3458899999999999999865 34454
Q ss_pred HHHHhcCCCCcEEEEcCCCC
Q psy7383 250 EFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~ 269 (501)
. +.++++.++||++...
T Consensus 97 ~---~~l~~g~~vid~~~p~ 113 (144)
T 3oj0_A 97 E---RSLMPGKLFIDLGNPP 113 (144)
T ss_dssp G---GGCCTTCEEEECCSSC
T ss_pred H---HHcCCCCEEEEccCCc
Confidence 4 5578899999998754
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.8e-08 Score=103.52 Aligned_cols=183 Identities=11% Similarity=0.068 Sum_probs=112.0
Q ss_pred CCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhh-hhhccccccccCCeEEeeccchHHHHHHHHHHhCCCE
Q psy7383 122 PGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQL-REAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFN 200 (501)
Q Consensus 122 pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~-~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~ 200 (501)
.|.|-..|.|.+..++|..-| ..++|....... +. ....+ .=++|+|||+|.||..||..+...|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~a~~---------~~~~w~~p~~~~~~~-~~~~~--~i~kVaVIGaG~MG~~IA~~la~aG~~ 79 (460)
T 3k6j_A 12 TGENLYFQGSEVRSYLMEAHS---------LAGQWSLPNDRGDHT-NSEAY--DVNSVAIIGGGTMGKAMAICFGLAGIE 79 (460)
T ss_dssp TSGGGGGCBCHHHHHHHHTTC---------CTTSCBCSTTSCBTT-SCCCC--CCCEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred cccchhhhhHHHHHHHHhHHH---------hhccccCCCCccccc-cCCcc--cCCEEEEECCCHHHHHHHHHHHHCCCe
Confidence 455666677777777776222 234464321100 00 00011 226899999999999999999999999
Q ss_pred EEEECCCCCchh---------hhhcC-------------ceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCC
Q psy7383 201 VIFYDPYLPDGI---------EKSLG-------------LTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRP 258 (501)
Q Consensus 201 Vi~~dr~~~~~~---------~~~~g-------------v~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~ 258 (501)
|++||++..... ..+.| +....+++ .+++||+||.++|.+.+.+..+-++..+.+++
T Consensus 80 V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~ 158 (460)
T 3k6j_A 80 TFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKS 158 (460)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCT
T ss_pred EEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCC
Confidence 999998754211 11112 23345675 68999999999998877766565778888999
Q ss_pred CcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 259 GAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 259 gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+++|+....+ +....|.+.+.. .-...++..|. |.. .++-|.++++-. .++++.+++..
T Consensus 159 ~aIlasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn--Pv~-------~m~LvEIv~g~~-Ts~e~~~~~~~ 217 (460)
T 3k6j_A 159 TCIFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN--PAN-------VIRLVEIIYGSH-TSSQAIATAFQ 217 (460)
T ss_dssp TCEEEECCSS--SCHHHHHTTSSS-GGGEEEEECCS--STT-------TCCEEEEECCSS-CCHHHHHHHHH
T ss_pred CCEEEecCCC--hhHHHHHHhccC-CcceEEEEecc--hhh-------hCCEEEEEeCCC-CCHHHHHHHHH
Confidence 9999644443 444566665543 23345666665 432 233356666532 34454444433
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-08 Score=96.58 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=63.3
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
++..++|+|||+|.||+.+|+.|...|++|++||++.. .+++||+|++++| +..++.++. +
T Consensus 16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------~~~~aD~vi~av~-~~~~~~v~~-~ 76 (209)
T 2raf_A 16 YFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------ATTLGEIVIMAVP-YPALAALAK-Q 76 (209)
T ss_dssp ----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------CSSCCSEEEECSC-HHHHHHHHH-H
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------HhccCCEEEEcCC-cHHHHHHHH-H
Confidence 57889999999999999999999999999999997643 4568999999999 666776664 3
Q ss_pred HHhcCCCCcEEEEcCCCCc
Q psy7383 252 TIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~v 270 (501)
....++ ++++|++++|--
T Consensus 77 l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 77 YATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp THHHHT-TSEEEECCCCBC
T ss_pred HHHhcC-CCEEEEECCCCC
Confidence 445677 999999999754
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-08 Score=96.49 Aligned_cols=100 Identities=26% Similarity=0.311 Sum_probs=77.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
++|+|||+|.||+.+++.|...|.+|.+||++... ...+..|+....+++++++++|+|++++| .... .+.+
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-----~~v~ 77 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-----ETVL 77 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-----HHHH
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-----HHHH
Confidence 58999999999999999999999999999987532 12223466666689999999999999999 4333 3445
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
..++++.++|++..| +..+.+.+.+..+
T Consensus 78 ~~l~~~~~vv~~~~~--~~~~~l~~~~~~~ 105 (259)
T 2ahr_A 78 KPLHFKQPIISMAAG--ISLQRLATFVGQD 105 (259)
T ss_dssp TTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred HHhccCCEEEEeCCC--CCHHHHHHhcCCC
Confidence 567789999999876 4455676766544
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.1e-08 Score=97.53 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=83.3
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC---EEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF---NVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~---~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
.++|+|||+|+||+.+++.|...|+ +|++|||+... ...+..|+....+..++++++|+|++++|. .....++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl- 80 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC- 80 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence 4689999999999999999999998 89999998643 222335777777899999999999999974 3444454
Q ss_pred HHHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHc-CCce
Q psy7383 250 EFTIKQ-MRPGAFLVNTARGGLVDDDSLAAALKQ-GRIR 286 (501)
Q Consensus 250 ~~~l~~-MK~gAilINvaRG~vVde~aL~~aL~~-g~I~ 286 (501)
++.... ++++++||++.-| +..+.|.+.+.. .++.
T Consensus 81 ~~l~~~~l~~~~iiiS~~ag--i~~~~l~~~l~~~~~vv 117 (280)
T 3tri_A 81 EELKDILSETKILVISLAVG--VTTPLIEKWLGKASRIV 117 (280)
T ss_dssp HHHHHHHHTTTCEEEECCTT--CCHHHHHHHHTCCSSEE
T ss_pred HHHHhhccCCCeEEEEecCC--CCHHHHHHHcCCCCeEE
Confidence 344445 7889899998877 566788888865 3444
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=94.94 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=75.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh------------hhc------------------CceecCCHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE------------KSL------------------GLTRVYTLQ 225 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~------------~~~------------------gv~~~~sLd 225 (501)
++|+|||+|.||..+|..|...|++|++||++...... .+. .+....+++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 95 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence 68999999999999999999999999999987432100 011 233346788
Q ss_pred HHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 226 DLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 226 elL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
+.+++||+|++++|...+.+.-+-++..+.++++++|+....+ +....+.+.+.
T Consensus 96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~ 149 (302)
T 1f0y_A 96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATT 149 (302)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSS
T ss_pred HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcC
Confidence 8899999999999976655444445566678999999865555 44455655553
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=91.78 Aligned_cols=99 Identities=19% Similarity=0.296 Sum_probs=74.0
Q ss_pred CCeEEeeccchHHHHHHHHHHhCC----CEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.++|+|||+|.||+.+|+.|...| .+|.+||++... .|+....+++++++++|+|++++|. ...+.++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~~- 76 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----TTLNYMSSNEELARHCDIIVCAVKP-DIAGSVLN- 76 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----SSSEECSCHHHHHHHCSEEEECSCT-TTHHHHHH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHHH-
Confidence 368999999999999999999888 689999987654 4666666888999999999999994 45555553
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+....+ ++.++|....| ++.+.+.+.+..+
T Consensus 77 ~l~~~l-~~~~vv~~~~g--i~~~~l~~~~~~~ 106 (262)
T 2rcy_A 77 NIKPYL-SSKLLISICGG--LNIGKLEEMVGSE 106 (262)
T ss_dssp HSGGGC-TTCEEEECCSS--CCHHHHHHHHCTT
T ss_pred HHHHhc-CCCEEEEECCC--CCHHHHHHHhCCC
Confidence 344556 45566666555 5556666666554
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-08 Score=96.05 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=70.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
..++|+|||+|.||+.+++.|...|++|++|||+... ......++... +++++++++|+|++++|. ...+.++.
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~~--- 101 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLCS--- 101 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence 3578999999999999999999999999999987532 11222355544 788999999999999994 34555653
Q ss_pred HhcCCCCcEEEEcCCCCcc
Q psy7383 253 IKQMRPGAFLVNTARGGLV 271 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vV 271 (501)
++.+.+++++|++++|.-.
T Consensus 102 l~~~~~~~~vv~~s~g~~~ 120 (215)
T 2vns_A 102 LSDQLAGKILVDVSNPTEQ 120 (215)
T ss_dssp GHHHHTTCEEEECCCCCHH
T ss_pred HHHhcCCCEEEEeCCCccc
Confidence 3333489999999999644
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=99.25 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=72.2
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
++|+|||+ |.||+.+|+.|...|++|++||++... ......|+.. .+++++++++|+|++++|... ++.++ ++..
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~-~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~ 88 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPL-TDGDGWIDEADVVVLALPDNI-IEKVA-EDIV 88 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCC-CCSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCc-CCHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence 58999999 999999999999999999999987532 2222345543 367788999999999999543 55555 4566
Q ss_pred hcCCCCcEEEEcCCCC
Q psy7383 254 KQMRPGAFLVNTARGG 269 (501)
Q Consensus 254 ~~MK~gAilINvaRG~ 269 (501)
..++++++||+++.+.
T Consensus 89 ~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 89 PRVRPGTIVLILDAAA 104 (286)
T ss_dssp GGSCTTCEEEESCSHH
T ss_pred HhCCCCCEEEECCCCc
Confidence 7789999999998875
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.4e-08 Score=100.87 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=81.1
Q ss_pred ccCCeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCc--hhhhhcC--ceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPD--GIEKSLG--LTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~--~~~~~~g--v~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
...++|+|||+|.||+.+++.|.. +|+ +|.+|||+... ...+..+ +..+.+++++++++|+|++++|. ++.
T Consensus 133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~ 209 (312)
T 2i99_A 133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEP 209 (312)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCc
Confidence 456899999999999999999865 487 89999997543 2233334 56667899999999999999984 356
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
++.. ..+++|.++++++....- ...|.+.+.+..+ .++|-
T Consensus 210 v~~~---~~l~~g~~vi~~g~~~p~-~~el~~~~~~~g~--~~vD~ 249 (312)
T 2i99_A 210 ILFG---EWVKPGAHINAVGASRPD-WRELDDELMKEAV--LYVDS 249 (312)
T ss_dssp CBCG---GGSCTTCEEEECCCCSTT-CCSBCHHHHHHSE--EEESC
T ss_pred ccCH---HHcCCCcEEEeCCCCCCC-ceeccHHHHhcCE--EEECC
Confidence 6654 578999999999876552 3444444443333 36773
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-08 Score=96.01 Aligned_cols=100 Identities=22% Similarity=0.294 Sum_probs=74.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
++|+|||+|.||+.+|+.|...| .+|.+||++... ...+..|+....++++++ ++|+|++++| ....+.++. .
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~--~ 76 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACK--N 76 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHT--T
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHH--H
Confidence 47999999999999999999989 999999987532 122234776666777888 9999999999 555554442 1
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+.. + +.++|+++.| +..+.|.+.+..+
T Consensus 77 l~~-~-~~ivv~~~~g--~~~~~l~~~~~~~ 103 (263)
T 1yqg_A 77 IRT-N-GALVLSVAAG--LSVGTLSRYLGGT 103 (263)
T ss_dssp CCC-T-TCEEEECCTT--CCHHHHHHHTTSC
T ss_pred hcc-C-CCEEEEecCC--CCHHHHHHHcCCC
Confidence 222 4 8999999766 3446777777653
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-07 Score=97.47 Aligned_cols=184 Identities=15% Similarity=0.110 Sum_probs=111.0
Q ss_pred cceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeec---CCCC-----chhhHHHHH--HHHHH
Q psy7383 70 EAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNV---PGYG-----VEEVADTTL--CLILN 139 (501)
Q Consensus 70 ~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~---pg~~-----a~aVAE~al--al~L~ 139 (501)
++|.++-... +...+.....+++.++......++.-.++.+.+.||...|. +.-. ..+++|.+- +.++.
T Consensus 66 ~ad~i~~vks-P~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~g 144 (361)
T 1pjc_A 66 SREMVVKVKE-PLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFG 144 (361)
T ss_dssp TSSEEECSSC-CCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHH
T ss_pred cCCeEEEECC-CCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHH
Confidence 4665443332 33222222235665666666666665677888899888754 3211 133444333 33333
Q ss_pred HHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCc
Q psy7383 140 LYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 140 l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv 218 (501)
.. ++.. ...|+ +. . ..+...+.+++|.|+|.|.+|+.+++.|+.+|++|+++|++..+ +..++.+.
T Consensus 145 A~-nt~~----~~~g~---G~--~---l~~l~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~ 211 (361)
T 1pjc_A 145 AR-FLER----QQGGR---GV--L---LGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG 211 (361)
T ss_dssp HH-HTSG----GGTSC---CC--C---TTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG
T ss_pred HH-HHhh----ccCCC---ce--e---ccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC
Confidence 21 1100 01111 00 0 01112478899999999999999999999999999999987532 11222221
Q ss_pred ee-------cCCHHHHHhcCCEEEEeccCch-hhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 219 TR-------VYTLQDLLFQSDCVSLHCTLNE-HNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 219 ~~-------~~sLdelL~~sDvVil~lPlt~-~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.. ..++.+.+.++|+|+.+++... .+..++.++.++.||++.++||++-
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 212 SRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp GGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred ceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence 11 1245667889999999886532 2345678889999999999999984
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=100.58 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=83.9
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhh-----------------hcCceecCCHHHHHhcC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEK-----------------SLGLTRVYTLQDLLFQS 231 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~-----------------~~gv~~~~sLdelL~~s 231 (501)
++..-++|+|||+|.||..+|..|.. |++|++||+....- ..+ ..++....++++++++|
T Consensus 32 r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~a 110 (432)
T 3pid_A 32 RGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNA 110 (432)
T ss_dssp ---CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTC
T ss_pred cccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCC
Confidence 34566799999999999999999988 99999999875321 111 11345556888999999
Q ss_pred CEEEEeccCchh-------hhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 232 DCVSLHCTLNEH-------NHHLI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 232 DvVil~lPlt~~-------T~~lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
|+|++++|...+ +..+. -+...+ |++++++|+.+.-.+-..+.+.+.+.+..+
T Consensus 111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v 172 (432)
T 3pid_A 111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV 172 (432)
T ss_dssp SEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred CEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence 999999996421 12222 245566 999999999999888888899888877654
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-07 Score=98.10 Aligned_cols=107 Identities=12% Similarity=0.130 Sum_probs=81.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhh-------------------hcCceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEK-------------------SLGLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~-------------------~~gv~~~~sLdelL~~sDvV 234 (501)
-+++|||+|.||..+|..|...|++|++||++...- ..+ ...+....++++.+++||+|
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv 88 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV 88 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence 479999999999999999999999999999886531 111 01234456888999999999
Q ss_pred EEeccCchh----------hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 235 SLHCTLNEH----------NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 235 il~lPlt~~----------T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
++|+|...+ .+..+ +...+.|++++++|+.|.-.+-..+.+.+.+.+.
T Consensus 89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~ 146 (446)
T 4a7p_A 89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV 146 (446)
T ss_dssp EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence 999885321 23333 5677889999999999976665667777777653
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=88.36 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=81.5
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcC-------ceecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLG-------LTRVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~g-------v~~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
++|+|+| +|.||+.+++.|...|++|.+|||+.... ..+..+ +. ..+++++++++|+|++++|. ..++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~-~~~~ 78 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW-EHAI 78 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH-HHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh-hhHH
Confidence 4799999 99999999999999999999999874321 111112 33 34788899999999999983 3444
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCCccC------------HHHHHHHHHcCCceEEEEecCCCCCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARGGLVD------------DDSLAAALKQGRIRAAALDVHESEPY 298 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG~vVd------------e~aL~~aL~~g~I~GAaLDVfe~EPl 298 (501)
.++. +....++ +.++|+++.|--.+ .+.|.+.+... ..++++.++|.
T Consensus 79 ~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~----~~v~~~~~~~~ 137 (212)
T 1jay_A 79 DTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESE----KVVSALHTIPA 137 (212)
T ss_dssp HHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCS----CEEECCTTCCH
T ss_pred HHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCC----eEEEEccchHH
Confidence 4443 3334454 99999999874322 46777777532 36688877764
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=98.76 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=78.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhh-------------------cC-ceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKS-------------------LG-LTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~-------------------~g-v~~~~sLdelL~~sDvV 234 (501)
++|+|||+|.||..+|..|...|++|++||++.... .... .+ +....++++++++||+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 479999999999999999999999999999864321 1111 22 44456788899999999
Q ss_pred EEeccCchh---------hhhcccHHHHhcCCC---CcEEEEcCCCCccC-HHHHHHHHHc
Q psy7383 235 SLHCTLNEH---------NHHLINEFTIKQMRP---GAFLVNTARGGLVD-DDSLAAALKQ 282 (501)
Q Consensus 235 il~lPlt~~---------T~~lI~~~~l~~MK~---gAilINvaRG~vVd-e~aL~~aL~~ 282 (501)
++++|...+ .+..+ ++....|++ ++++|+++...+-. .+.+.+.+++
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~ 140 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED 140 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence 999986443 33333 445566888 99999998766555 5667777765
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=98.34 Aligned_cols=106 Identities=13% Similarity=0.089 Sum_probs=79.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhh-------------------hcCceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEK-------------------SLGLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~-------------------~~gv~~~~sLdelL~~sDvV 234 (501)
++|+|||+|.||..+|..|...|++|++||++... ...+ ...+....++++++++||+|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV 82 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII 82 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence 58999999999999999999999999999987532 1111 11234456889999999999
Q ss_pred EEeccCch---------hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 235 SLHCTLNE---------HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 235 il~lPlt~---------~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
++++|... ..+.++ ++..+.++++.++|+.+.-.+-..+.+.+.+++
T Consensus 83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~ 138 (450)
T 3gg2_A 83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE 138 (450)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence 99998542 233333 456778999999999997555555666666655
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-07 Score=81.81 Aligned_cols=103 Identities=12% Similarity=0.202 Sum_probs=80.8
Q ss_pred ccCCeEEeecc----chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 173 IRGDTLGIVGL----GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 173 L~gktVGIVGl----G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI 248 (501)
++-++|+|||. |.+|+.+++.|+..|++|+.+|+...+ -.|...+.+++|+....|++++++| .+....++
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~----i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~ 86 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA 86 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe----ECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH
Confidence 45688999999 999999999999999999989887422 2466666689999999999999999 56677776
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
. +.++ +..++++++++. ..++|.+.+++..+.
T Consensus 87 ~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 87 K-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE 118 (138)
T ss_dssp H-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred H-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence 4 3444 667788887754 267888888887776
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.3e-07 Score=95.56 Aligned_cols=114 Identities=23% Similarity=0.291 Sum_probs=80.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhh-----------hcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEK-----------SLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~-----------~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||+|.||..||..+...|++|++||++.... ... +.| +....+++ .+++
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 84 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALAA 84 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-HhcC
Confidence 589999999999999999999999999999875321 100 112 22344564 6899
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLV-NTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilI-NvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
||+||.++|...+.+.-+-++..+.++++++|+ |+|. +....|.+.+.. .-...++..|.
T Consensus 85 aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSt---i~i~~ia~~~~~-p~~~ig~hf~~ 145 (483)
T 3mog_A 85 ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSS---ISITAIAAEIKN-PERVAGLHFFN 145 (483)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSS---SCHHHHTTTSSS-GGGEEEEEECS
T ss_pred CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCC---CCHHHHHHHccC-ccceEEeeecC
Confidence 999999999877666555567778899999994 6765 344556555542 22334566554
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-07 Score=88.13 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=65.1
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEE-ECCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIF-YDPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~-~dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
-++|+|||+|.||+.+|+.|...|++|++ |||+.... ..+..+.....+..+.++++|+|++++|.. ....++.
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~-- 99 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYD-SIADIVT-- 99 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGG-GHHHHHT--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChH-HHHHHHH--
Confidence 36899999999999999999999999999 99876432 233345544445566789999999999832 3333332
Q ss_pred HHhcCCCCcEEEEcCCC
Q psy7383 252 TIKQMRPGAFLVNTARG 268 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG 268 (501)
.+.. .++.++|+++-|
T Consensus 100 ~l~~-~~~~ivi~~~~g 115 (220)
T 4huj_A 100 QVSD-WGGQIVVDASNA 115 (220)
T ss_dssp TCSC-CTTCEEEECCCC
T ss_pred Hhhc-cCCCEEEEcCCC
Confidence 1222 358899999876
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.42 E-value=7.3e-07 Score=89.77 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=75.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-h-hhhhcCc--------------eecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-G-IEKSLGL--------------TRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~-~~~~~gv--------------~~~~sLdelL~~sDvVil~lP 239 (501)
++|+|||+|.||+.+|..|...|++|.+||++... + ..+..++ ....++++++.++|+|++++|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 84 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 84 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence 68999999999999999999999999999987432 1 1111121 234578888999999999999
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
... +..++ ++....+++++++|++ -|.......+.+.+.+
T Consensus 85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~ 124 (359)
T 1bg6_A 85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE 124 (359)
T ss_dssp GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence 654 34554 5566779999999999 4422344445565655
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.40 E-value=4.6e-07 Score=90.55 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=74.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECC--CCCc-hhhhhcCc-----------eecC--CHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDP--YLPD-GIEKSLGL-----------TRVY--TLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr--~~~~-~~~~~~gv-----------~~~~--sLdelL~~sDvVil~lP 239 (501)
++|+|||+|.||+.+|..|...|++|++||+ +... +.....+. .... +++++++++|+|++++|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 4799999999999999999999999999998 5321 11122221 2333 67788999999999999
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCCC---c-cCHHHHHHHHHc
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARGG---L-VDDDSLAAALKQ 282 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG~---v-Vde~aL~~aL~~ 282 (501)
.. .+..++ ++... +++++++|+++.|- - -..+.+.+.+.+
T Consensus 81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~ 124 (335)
T 1txg_A 81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL 124 (335)
T ss_dssp GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence 55 455554 34556 88999999998874 1 133456666654
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=8.4e-07 Score=94.88 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=75.7
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhh--------------------cCceecCCHHHHHhcCCE
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKS--------------------LGLTRVYTLQDLLFQSDC 233 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~--------------------~gv~~~~sLdelL~~sDv 233 (501)
.++|+|||+|.||..+|..|...|++|++||++... +.... ..+....++++.+++||+
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv 87 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV 87 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence 478999999999999999999999999999986421 11111 013344577788999999
Q ss_pred EEEeccCc---------hhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 234 VSLHCTLN---------EHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 234 Vil~lPlt---------~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
|++++|.. ...+.++ ++....+++++++|+.+.-.+=..+.+.+.+.+
T Consensus 88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~ 144 (478)
T 2y0c_A 88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE 144 (478)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence 99999852 2333343 456677999999999984333344445555543
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-06 Score=98.03 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=79.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh------------hhcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE------------KSLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~------------~~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||+|.||..||..+...|++|++||++...... .+.| +....++ +.+++
T Consensus 315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 393 (715)
T 1wdk_A 315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 393 (715)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC
Confidence 57999999999999999999999999999987532100 1122 2233456 67899
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
||+||.++|...+.+.-+-++..+.++++++|+..+.+ +....+.+.+.. .-...++..|.
T Consensus 394 aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-~~~~ig~hf~~ 454 (715)
T 1wdk_A 394 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR-PENFVGMHFFN 454 (715)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC-GGGEEEEECCS
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhcC-ccceEEEEccC
Confidence 99999999988776665556677889999999854443 334455555532 11224556554
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.37 E-value=9.3e-07 Score=91.07 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=73.3
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhc--------------CceecCCHHHHHhcCCEEEEecc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSL--------------GLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~--------------gv~~~~sLdelL~~sDvVil~lP 239 (501)
.++|+|||.|.||..+|..|...|.+|.+|+++... +..... .+....++++.++++|+|++++|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp 108 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP 108 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence 468999999999999999999999999999987432 111111 12334688899999999999999
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCCCccC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARGGLVD 272 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG~vVd 272 (501)
.. ..+.++ ++....+++++++|++..|-..+
T Consensus 109 ~~-~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~ 139 (356)
T 3k96_A 109 SF-AFHEVI-TRMKPLIDAKTRIAWGTKGLAKG 139 (356)
T ss_dssp HH-HHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred HH-HHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence 43 455554 45667789999999999875544
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.4e-07 Score=91.09 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=70.9
Q ss_pred CCeEEeeccchHHHHHHHHHHhCC-------CEEEEECCCCC-----ch-hhhh--------------cCceecCCHHHH
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFG-------FNVIFYDPYLP-----DG-IEKS--------------LGLTRVYTLQDL 227 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG-------~~Vi~~dr~~~-----~~-~~~~--------------~gv~~~~sLdel 227 (501)
.++|+|||+|.||..+|..|...| .+|.+||++.. .. .... .++....+++++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA 87 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence 358999999999999999998888 89999998764 21 1111 123334578888
Q ss_pred HhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q psy7383 228 LFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 228 L~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~v 270 (501)
++++|+|++++|. ..++.++ ++....+++++++|+++.|-.
T Consensus 88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence 9999999999994 3455554 345567889999999988744
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.1e-07 Score=88.29 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=75.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec------------CCHHHHHh---cCCEEEEecc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV------------YTLQDLLF---QSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~------------~sLdelL~---~sDvVil~lP 239 (501)
++|+|||+|.||+.+|..|...|++|++||++... +...+.++... .+.+++.. ++|+|++++|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence 58999999999999999999999999999987532 11122232211 13345544 8999999999
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
. ..+..++ ++....+++++++|+++.| +-..+.|.+.+.+.++.
T Consensus 84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g-~~~~~~l~~~~~~~~vi 127 (316)
T 2ew2_A 84 A-QQLDAMF-KAIQPMITEKTYVLCLLNG-LGHEDVLEKYVPKENIL 127 (316)
T ss_dssp H-HHHHHHH-HHHGGGCCTTCEEEECCSS-SCTHHHHTTTSCGGGEE
T ss_pred c-ccHHHHH-HHHHHhcCCCCEEEEecCC-CCcHHHHHHHcCCccEE
Confidence 4 3555555 4556678999999999875 22345666666555544
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=91.69 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=77.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcC------------------ceecCCHHHHHhcCCEEEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLG------------------LTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~g------------------v~~~~sLdelL~~sDvVil 236 (501)
++|+|||+|.||..+|..|.. |++|++||++... +.....+ +....++++.+++||+|++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 479999999999999999998 9999999987432 1111111 1333467788999999999
Q ss_pred eccCch----------hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 237 HCTLNE----------HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 237 ~lPlt~----------~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
++|... ..+..+ ++... +++++++|+.+.-.+-..+.+.+.+.+..+
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v 136 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDRI 136 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSCE
T ss_pred ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCCeE
Confidence 999653 234443 34555 899999999887766667777777765533
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=9e-07 Score=94.54 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=77.3
Q ss_pred CeEEeeccchHHHHHHHHHHhC--CCEEEEECCCCCch-hhhh-------------------cCceecCCHHHHHhcCCE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--GFNVIFYDPYLPDG-IEKS-------------------LGLTRVYTLQDLLFQSDC 233 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G~~Vi~~dr~~~~~-~~~~-------------------~gv~~~~sLdelL~~sDv 233 (501)
++|+|||+|.||..+|..|... |++|++||++.... .... .++....++++.+++||+
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv 89 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL 89 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence 5899999999999999999877 79999999864321 0000 123334567788999999
Q ss_pred EEEeccCchh--------------hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 234 VSLHCTLNEH--------------NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 234 Vil~lPlt~~--------------T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
|++++|.... .+..+ ++..+.+++++++|+.+.-.+-..+.+.+.+++
T Consensus 90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~ 151 (481)
T 2o3j_A 90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE 151 (481)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence 9999985321 22222 456678999999999987666556677788876
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.33 E-value=6e-07 Score=92.17 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=69.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCC-------CEEEEECCCCC-----ch-hhhh--------------cCceecCCHHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG-------FNVIFYDPYLP-----DG-IEKS--------------LGLTRVYTLQDLL 228 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG-------~~Vi~~dr~~~-----~~-~~~~--------------~gv~~~~sLdelL 228 (501)
++|+|||.|.||..+|..|...| .+|.+||++.. .. .... .++....++++++
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~ 101 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI 101 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence 47999999999999999998878 99999998765 21 1111 1234445788889
Q ss_pred hcCCEEEEeccCchhhhhcccHHHHh----cCCCCcEEEEcCCCC
Q psy7383 229 FQSDCVSLHCTLNEHNHHLINEFTIK----QMRPGAFLVNTARGG 269 (501)
Q Consensus 229 ~~sDvVil~lPlt~~T~~lI~~~~l~----~MK~gAilINvaRG~ 269 (501)
+++|+|++++|. ...+.++. +... .+++++++|+++.|-
T Consensus 102 ~~aDvVilav~~-~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~Gi 144 (375)
T 1yj8_A 102 NDADLLIFIVPC-QYLESVLA-SIKESESIKIASHAKAISLTKGF 144 (375)
T ss_dssp TTCSEEEECCCH-HHHHHHHH-HHTC---CCCCTTCEEEECCCSC
T ss_pred cCCCEEEEcCCH-HHHHHHHH-HHhhhhhccCCCCCEEEEeCCcc
Confidence 999999999993 45555552 3444 688899999998873
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.5e-07 Score=90.96 Aligned_cols=87 Identities=13% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcC-----------ceecCCHHHHHhcCCEEEEeccCch
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLG-----------LTRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~g-----------v~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
..+|+|||+|.||..+|++|...|.+|.+|||+... +...+.+ +....++++ +..+|+|++++|. .
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~ 91 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-Q 91 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-G
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-H
Confidence 468999999999999999999999999999987432 1112222 344567888 8999999999993 4
Q ss_pred hhhhcccHHHHhcCC-CCcEEEEcCCC
Q psy7383 243 HNHHLINEFTIKQMR-PGAFLVNTARG 268 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK-~gAilINvaRG 268 (501)
+++.++ ..++ ++.++|+++.|
T Consensus 92 ~~~~v~-----~~l~~~~~~vv~~~nG 113 (335)
T 1z82_A 92 YIREHL-----LRLPVKPSMVLNLSKG 113 (335)
T ss_dssp GHHHHH-----TTCSSCCSEEEECCCC
T ss_pred HHHHHH-----HHhCcCCCEEEEEeCC
Confidence 555444 3344 78999999987
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=3e-07 Score=93.84 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=70.1
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhc--------------CceecCCHHHHHhcCCEEEEeccCc
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSL--------------GLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~--------------gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
+|+|||+|.||..+|..|...|++|.+||++... +..... ++....++++++.++|+|++++|.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~- 95 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT- 95 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence 8999999999999999999999999999987432 111111 234445788899999999999994
Q ss_pred hhhhhcccHH---HHhcCCC-CcEEEEcCCCCcc
Q psy7383 242 EHNHHLINEF---TIKQMRP-GAFLVNTARGGLV 271 (501)
Q Consensus 242 ~~T~~lI~~~---~l~~MK~-gAilINvaRG~vV 271 (501)
..++.++... ....+++ ++++|+++.|-..
T Consensus 96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~ 129 (366)
T 1evy_A 96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER 129 (366)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence 4555555321 4556778 9999999877433
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-06 Score=83.06 Aligned_cols=98 Identities=19% Similarity=0.303 Sum_probs=73.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEE-EEECCCCCchhhhhcCceecCCHHHHH-hcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNV-IFYDPYLPDGIEKSLGLTRVYTLQDLL-FQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~V-i~~dr~~~~~~~~~~gv~~~~sLdelL-~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
.+|||||+|.||+.+++.+...|++| .+||+.... .+ .+.++++++ .++|+|++++|.... . +...
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~--~~-----~~~~~~~l~~~~~DvVv~~~~~~~~-~----~~~~ 68 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEH--EK-----MVRGIDEFLQREMDVAVEAASQQAV-K----DYAE 68 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCC--TT-----EESSHHHHTTSCCSEEEECSCHHHH-H----HHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcch--hh-----hcCCHHHHhcCCCCEEEECCCHHHH-H----HHHH
Confidence 37999999999999999998889997 689987421 11 356899999 699999999984321 2 2234
Q ss_pred hcCCCCcEEEEcCCCCccCH---HHHHHHHHcCCc
Q psy7383 254 KQMRPGAFLVNTARGGLVDD---DSLAAALKQGRI 285 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde---~aL~~aL~~g~I 285 (501)
..++.|..+|+.+.+..-+. +.|.++.++..+
T Consensus 69 ~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~ 103 (236)
T 2dc1_A 69 KILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGR 103 (236)
T ss_dssp HHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCC
Confidence 56778999999988776655 567777766443
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.1e-06 Score=88.34 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=77.3
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhh-----------cC-----------ceecCCHHHHHhcC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKS-----------LG-----------LTRVYTLQDLLFQS 231 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~-----------~g-----------v~~~~sLdelL~~s 231 (501)
=++|+|||+|.||..||..|...|++|++||++... +.... .| .....++ +.+++|
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a 115 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV 115 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence 368999999999999999999999999999987531 10000 01 1123456 568899
Q ss_pred CEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecC
Q psy7383 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVH 293 (501)
Q Consensus 232 DvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVf 293 (501)
|+||.++|...+.+.-+-++....++++++|+....+ +....|.+.+... -.-+++..|
T Consensus 116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~--~~~~~la~~~~~~-~~~ig~hf~ 174 (463)
T 1zcj_A 116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDRP-QLVIGTHFF 174 (463)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSCG-GGEEEEEEC
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--cCHHHHHHHhcCC-cceEEeecC
Confidence 9999999976554444445666789999999974333 3444666655431 222355656
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-06 Score=95.01 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=78.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hh-----------hhcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IE-----------KSLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~-----------~~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||.|.||..||..+...|++|++||++.... .. .+.| +....++ +.+++
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 391 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD 391 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence 579999999999999999999999999999875321 00 0011 2233456 56899
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc-CCceEEEEecCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ-GRIRAAALDVHE 294 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~-g~I~GAaLDVfe 294 (501)
||+||.++|...+.+.-+-++..+.++++++|+....+ +....+.+.++. .++ .++..|.
T Consensus 392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~p~~~--iG~hf~~ 452 (725)
T 2wtb_A 392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKSQDRI--VGAHFFS 452 (725)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSCTTTE--EEEEECS
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcCCCCE--EEecCCC
Confidence 99999999987766555556677889999999654433 333455555532 133 3556554
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-06 Score=86.75 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=83.1
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||.|. +|+.+|+.|...|++|++++++. .++++.++++|+||.+++. .++|..
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t-------------~~L~~~~~~ADIVI~Avg~----p~~I~~ 219 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------KDLSLYTRQADLIIVAAGC----VNLLRS 219 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SCHHHHHTTCSEEEECSSC----TTCBCG
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHhhcCCEEEECCCC----CCcCCH
Confidence 58999999999998 69999999999999999998542 3688999999999999973 456776
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSE 322 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ 322 (501)
+. +|+|+++||++.-.+-| |++.| ||...+=. +. --.+||==+|.-.
T Consensus 220 ~~---vk~GavVIDVgi~~~~~----------gkl~G---DVdf~~v~-----~~----a~~iTPVPGGVGp 266 (285)
T 3p2o_A 220 DM---VKEGVIVVDVGINRLES----------GKIVG---DVDFEEVS-----KK----SSYITPVPGGVGP 266 (285)
T ss_dssp GG---SCTTEEEEECCCEECTT----------SCEEC---SBCHHHHT-----TT----EEEECCSSSSHHH
T ss_pred HH---cCCCeEEEEeccCcccC----------CCEec---cccHHHHH-----hh----heEeCCCCCcCcH
Confidence 54 59999999999765432 67766 77422210 11 2478997676544
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=84.24 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=66.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhc---Cc----eecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSL---GL----TRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~---gv----~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
++|+|||+|.||..+|..|...|++|.+|||+.... ..... +. ....+..+.++++|+|++++|.. ++..+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v 79 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA 79 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHH
Confidence 479999999999999999999999999999876421 11111 11 01113346788999999999965 45555
Q ss_pred ccHHHHhcCCCCcEEEEcCCC
Q psy7383 248 INEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG 268 (501)
+ ++....+++++++|++..|
T Consensus 80 ~-~~l~~~l~~~~~vv~~~~g 99 (291)
T 1ks9_A 80 V-KSLASTLPVTTPILLIHNG 99 (291)
T ss_dssp H-HHHHTTSCTTSCEEEECSS
T ss_pred H-HHHHhhCCCCCEEEEecCC
Confidence 5 4566778999999998765
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.9e-06 Score=84.82 Aligned_cols=103 Identities=11% Similarity=0.185 Sum_probs=75.5
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCc--hhhhhc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLN--EHNHHL 247 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt--~~T~~l 247 (501)
++| +++|||.|.+|++++..|...|+ +|+++||+..+. ..+..+.....+++++++++|+||+++|.. ++ ...
T Consensus 107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~-~~~ 184 (253)
T 3u62_A 107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE-ELP 184 (253)
T ss_dssp CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC-CCS
T ss_pred CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC-CCC
Confidence 578 99999999999999999999999 899999975432 112222223456788899999999999863 22 223
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
++.+. ++++.+++++.-+ .++-|.++.+.|
T Consensus 185 i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G 214 (253)
T 3u62_A 185 VSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG 214 (253)
T ss_dssp CCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred CCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence 45443 5789999999988 555555565555
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.1e-07 Score=79.90 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=79.7
Q ss_pred CCeEEeecc----chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 175 GDTLGIVGL----GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 175 gktVGIVGl----G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
-++|+|||+ |.+|..+++.|+..|++|+.+|+...- .+..|...+.+++|+....|++++++| .+....++.
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g--~~i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~- 88 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAG--KTLLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQ- 88 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTT--SEETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHH-
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccc--cccCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHH-
Confidence 578999999 899999999999999999988886520 112466666689999889999999999 466677764
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+.++ ...++++|+.+. . ++++.+.+++..+.
T Consensus 89 ~~~~-~g~~~i~i~~~~--~--~~~l~~~a~~~Gi~ 119 (145)
T 2duw_A 89 EAIA-IGAKTLWLQLGV--I--NEQAAVLAREAGLS 119 (145)
T ss_dssp HHHH-HTCCEEECCTTC--C--CHHHHHHHHTTTCE
T ss_pred HHHH-cCCCEEEEcCCh--H--HHHHHHHHHHcCCE
Confidence 3444 566778887642 2 78899999988876
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-06 Score=91.78 Aligned_cols=102 Identities=18% Similarity=0.223 Sum_probs=76.1
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CC-EEEEECCCCC----ch--hhh--------h------------cC-ceecCCHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GF-NVIFYDPYLP----DG--IEK--------S------------LG-LTRVYTLQD 226 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~-~Vi~~dr~~~----~~--~~~--------~------------~g-v~~~~sLde 226 (501)
++|+|||+|.||..+|..|... |+ +|++||+... .- ..+ + .+ +....+ .+
T Consensus 19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~e 97 (478)
T 3g79_A 19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FS 97 (478)
T ss_dssp CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GG
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HH
Confidence 6899999999999999999999 99 9999998865 21 111 0 12 222334 67
Q ss_pred HHhcCCEEEEeccCc--------hhhhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q psy7383 227 LLFQSDCVSLHCTLN--------EHNHHLI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278 (501)
Q Consensus 227 lL~~sDvVil~lPlt--------~~T~~lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~ 278 (501)
.+++||+|++++|.. ++...+. .+...+.|++++++|+.+.-.+-..+.+.+
T Consensus 98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~ 159 (478)
T 3g79_A 98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK 159 (478)
T ss_dssp GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence 889999999999964 2333333 256778899999999999877766666665
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.5e-06 Score=85.65 Aligned_cols=110 Identities=20% Similarity=0.222 Sum_probs=82.6
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||.|. +|+.+|+.|...|++|++++++. .++++.++++|+||.+++. .++|..
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T-------------~~L~~~~~~ADIVI~Avg~----p~~I~~ 220 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT-------------RDLADHVSRADLVVVAAGK----PGLVKG 220 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC-------------SCHHHHHHTCSEEEECCCC----TTCBCG
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC-------------cCHHHHhccCCEEEECCCC----CCCCCH
Confidence 58999999999987 79999999999999999987532 2688999999999999873 456776
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEA 323 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~e 323 (501)
+. +|+|+++||++.-.+-| |++.| ||...+=.. . --.+||==+|.-.-
T Consensus 221 ~~---vk~GavVIDvgi~~~~~----------gkl~G---DVdf~~v~~-----~----a~~iTPVPGGVGpm 268 (286)
T 4a5o_A 221 EW---IKEGAIVIDVGINRQAD----------GRLVG---DVEYEVAAQ-----R----ASWITPVPGGVGPM 268 (286)
T ss_dssp GG---SCTTCEEEECCSCSSCC----------CCSSC---SBCHHHHHH-----H----CSEECCSSCSHHHH
T ss_pred HH---cCCCeEEEEeccccccc----------CCccc---CccHHHHHh-----h----ceEeCCCCCcchHH
Confidence 54 59999999999765433 66766 664221100 0 13789976765443
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=85.21 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=58.1
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
-++|+|||+|.||..+|+.|+..|++|++||+. ++ +.+|| ++++|.. ....++ ++...
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-----------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~ 63 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-----------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSA 63 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-----------------GG-GGGCS--EEEECSS-CHHHHH-HHHHT
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-----------------HH-hccCC--EEEEcHH-HHHHHH-HHHHH
Confidence 368999999999999999999999999999972 12 57899 8889975 556665 45667
Q ss_pred cCCCCcEEEEcC
Q psy7383 255 QMRPGAFLVNTA 266 (501)
Q Consensus 255 ~MK~gAilINva 266 (501)
.+++++++|+++
T Consensus 64 ~l~~g~ivvd~s 75 (232)
T 3dfu_A 64 FARRGQMFLHTS 75 (232)
T ss_dssp TCCTTCEEEECC
T ss_pred hcCCCCEEEEEC
Confidence 789999999985
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2e-06 Score=85.87 Aligned_cols=110 Identities=10% Similarity=0.083 Sum_probs=75.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchhhhhcCcee--cCCHHHHHhcCCEEEEeccCc--hhhhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGIEKSLGLTR--VYTLQDLLFQSDCVSLHCTLN--EHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~~~~~gv~~--~~sLdelL~~sDvVil~lPlt--~~T~~ 246 (501)
++.|+++.|||.|.+|+.++..|...|+ +|.+++|+..+.......+.. ..++++++.++|+||.++|.. ++...
T Consensus 114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~ 193 (277)
T 3don_A 114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS 193 (277)
T ss_dssp TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence 3789999999999999999999999999 899999986442221122222 234566688999999999964 22222
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
.++ ++.++++.+++|+.-... .+ .|++..++..+.
T Consensus 194 ~l~---~~~l~~~~~V~D~vY~P~-~T-~ll~~A~~~G~~ 228 (277)
T 3don_A 194 VIS---LNRLASHTLVSDIVYNPY-KT-PILIEAEQRGNP 228 (277)
T ss_dssp SSC---CTTCCSSCEEEESCCSSS-SC-HHHHHHHHTTCC
T ss_pred CCC---HHHcCCCCEEEEecCCCC-CC-HHHHHHHHCcCE
Confidence 233 456889999999987643 34 466555555443
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.20 E-value=4e-06 Score=84.11 Aligned_cols=110 Identities=10% Similarity=0.154 Sum_probs=77.4
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhhhcCc---eec--CCHHHHHhcCCEEEEeccCchh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEKSLGL---TRV--YTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~~~gv---~~~--~sLdelL~~sDvVil~lPlt~~ 243 (501)
++.+++++|||.|.+|+.++..|...|+ +|+++||+..+ ...+..+. ... .++.+.+.++|+||.++|....
T Consensus 138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~ 217 (297)
T 2egg_A 138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH 217 (297)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence 3788999999999999999999999998 99999998543 22233332 211 2455678899999999996532
Q ss_pred h--hh-cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 244 N--HH-LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 244 T--~~-lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
. .. .++ ...++++.+++|+.-. ...+. |++..++..+.
T Consensus 218 ~~~~~~~i~---~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~ 258 (297)
T 2egg_A 218 PRVEVQPLS---LERLRPGVIVSDIIYN-PLETK-WLKEAKARGAR 258 (297)
T ss_dssp SCCSCCSSC---CTTCCTTCEEEECCCS-SSSCH-HHHHHHHTTCE
T ss_pred CCCCCCCCC---HHHcCCCCEEEEcCCC-CCCCH-HHHHHHHCcCE
Confidence 1 11 233 3457899999999884 33343 66666665554
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-06 Score=89.58 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=75.1
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceec--CCHHHH---------------HhcCCEEE
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV--YTLQDL---------------LFQSDCVS 235 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~--~sLdel---------------L~~sDvVi 235 (501)
-.|.++.|||+|.||..+|..|...|++|++||++...-.....+.... ..++|+ +++||+|+
T Consensus 9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi 88 (431)
T 3ojo_A 9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI 88 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence 4688999999999999999999999999999998754311111111100 123333 35799999
Q ss_pred EeccCchh--------hhhcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 236 LHCTLNEH--------NHHLI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 236 l~lPlt~~--------T~~lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
+|+|...+ ...+. .+...+.|++|+++|+.|.-.+-..+.+.+.+.
T Consensus 89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~ 144 (431)
T 3ojo_A 89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVI 144 (431)
T ss_dssp ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHH
T ss_pred EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHH
Confidence 99995432 22233 246777899999999999877777777776543
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-06 Score=83.97 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=86.6
Q ss_pred ccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 173 IRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 173 L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
|+|+++.|||.|. +|+.+|+.|...|++|++++++ ..++++.+++||+||.+++. .++|.++
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~-------------t~~L~~~~~~ADIVI~Avg~----p~~I~~~ 210 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK-------------TKDIGSMTRSSKIVVVAVGR----PGFLNRE 210 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------CSCHHHHHHHSSEEEECSSC----TTCBCGG
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC-------------cccHHHhhccCCEEEECCCC----CccccHh
Confidence 7899999999996 7999999999999999999853 14788999999999999974 3567765
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHH
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREM 331 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~ 331 (501)
. +|+|+++||++.-. . +|++.| ||...+ .. +. --.+||==+|.-.-+..-+.+.
T Consensus 211 ~---vk~GavVIDvgi~~-~----------~gkl~G---DVdf~~-v~----~~----a~~iTPVPGGVGpmT~a~Ll~n 264 (276)
T 3ngx_A 211 M---VTPGSVVIDVGINY-V----------NDKVVG---DANFED-LS----EY----VEAITPVPGGVGPITATNILEN 264 (276)
T ss_dssp G---CCTTCEEEECCCEE-E----------TTEEEC---SBCHHH-HH----TT----SSEECCTTTSSHHHHHHHHHHH
T ss_pred h---ccCCcEEEEeccCc-c----------CCceec---cccHHH-Hh----hh----ceEeCCCCCcChHHHHHHHHHH
Confidence 4 59999999999754 2 256655 774322 00 01 1378997777655444433333
Q ss_pred HHHH
Q psy7383 332 AASE 335 (501)
Q Consensus 332 ~~~n 335 (501)
+++.
T Consensus 265 ~v~a 268 (276)
T 3ngx_A 265 VVKA 268 (276)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=98.15 E-value=3.5e-06 Score=84.66 Aligned_cols=124 Identities=14% Similarity=0.152 Sum_probs=88.8
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++|+++.|||.|. +|+.+|+.|...|++|++++++. .++.+.++++|+||.+++. .++|..
T Consensus 156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t-------------~~L~~~~~~ADIVI~Avg~----p~lI~~ 218 (288)
T 1b0a_A 156 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-------------KNLRHHVENADLLIVAVGK----PGFIPG 218 (288)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-------------SCHHHHHHHCSEEEECSCC----TTCBCT
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHhccCCEEEECCCC----cCcCCH
Confidence 58999999999997 59999999999999999997542 3789999999999999983 346776
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELRE 330 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~ 330 (501)
+. +|+|+++||++.-.+-| |++.| ||-..+ .. +. --.+||==+|.-.-+..-+.+
T Consensus 219 ~~---vk~GavVIDVgi~r~~~----------g~l~G---DVdf~~-v~----~~----a~~iTPVPGGVGpmT~a~Ll~ 273 (288)
T 1b0a_A 219 DW---IKEGAIVIDVGINRLEN----------GKVVG---DVVFED-AA----KR----ASYITPVPGGVGPMTVATLIE 273 (288)
T ss_dssp TT---SCTTCEEEECCCEECTT----------SCEEC---SBCHHH-HH----HH----CSEECCSSSSSHHHHHHHHHH
T ss_pred HH---cCCCcEEEEccCCccCC----------CCccC---CcCHHH-Hh----hh----ccEecCCCCCccHHHHHHHHH
Confidence 55 49999999999865432 56655 774221 00 00 136899777765544443334
Q ss_pred HHHHHHH
Q psy7383 331 MAASEIR 337 (501)
Q Consensus 331 ~~~~ni~ 337 (501)
.+++..+
T Consensus 274 Ntv~aa~ 280 (288)
T 1b0a_A 274 NTLQACV 280 (288)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3433333
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.7e-06 Score=84.98 Aligned_cols=131 Identities=19% Similarity=0.163 Sum_probs=90.4
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHH--HHHhcCCEEEEeccCchhhhhcc
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQ--DLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLd--elL~~sDvVil~lPlt~~T~~lI 248 (501)
+|+||++.|||.|. +|+.+|+.|...|++|++++++.. +++ +.+++||+||.+++. .++|
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~-------------~l~l~~~~~~ADIVI~Avg~----p~~I 224 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS-------------TEDMIDYLRTADIVIAAMGQ----PGYV 224 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC-------------HHHHHHHHHTCSEEEECSCC----TTCB
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC-------------CchhhhhhccCCEEEECCCC----CCCC
Confidence 58999999999998 699999999999999999987422 355 899999999999984 3567
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHH
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTE 327 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~ 327 (501)
.++. +|+|+++||++.-.+-|... ++| ++.| ||...+=. +. --.+||==+|.-.-+..-
T Consensus 225 ~~~~---vk~GavVIDvgi~~~~~~~~-----~~g~kl~G---DVdf~~v~-----~~----a~~iTPVPGGVGpmT~a~ 284 (300)
T 4a26_A 225 KGEW---IKEGAAVVDVGTTPVPDPSR-----KDGYRLVG---DVCFEEAA-----AR----AAWISPVPGGVGPMTIAM 284 (300)
T ss_dssp CGGG---SCTTCEEEECCCEEESCSCS-----TTSCEEEC---SBCHHHHT-----TT----CSEEECTTTSSSHHHHHH
T ss_pred cHHh---cCCCcEEEEEeccCCcCCcc-----cCCceeec---CccHHHHH-----hh----ceEeCCCCCcChHHHHHH
Confidence 6654 59999999999755433110 012 4544 77422210 01 147899777776655554
Q ss_pred HHHHHHHHHHHH
Q psy7383 328 LREMAASEIRRA 339 (501)
Q Consensus 328 ~~~~~~~ni~~~ 339 (501)
+.+.+++..+++
T Consensus 285 Ll~Ntv~aa~~~ 296 (300)
T 4a26_A 285 LLENTLEAFKAA 296 (300)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.8e-07 Score=88.04 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=72.6
Q ss_pred CeEEeeccchHHHHHHHHHHhC-----C-CEEEEECCCCCc-hhhhh-cCceecC-------------CHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-----G-FNVIFYDPYLPD-GIEKS-LGLTRVY-------------TLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-----G-~~Vi~~dr~~~~-~~~~~-~gv~~~~-------------sLdelL~~sDvV 234 (501)
++|+|||+|.||..+|..|... | .+|++|+| ... +...+ .|+.... +..+.+..+|+|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 87 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI 87 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence 4799999999999999999888 9 99999998 321 22222 3443221 233567899999
Q ss_pred EEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCH-HHHHHHHHcCCc
Q psy7383 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDD-DSLAAALKQGRI 285 (501)
Q Consensus 235 il~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde-~aL~~aL~~g~I 285 (501)
++++|... +..++ ++....+++++++|++.-| ++. +.|.+.+.+.++
T Consensus 88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG--~~~~~~l~~~l~~~~v 135 (317)
T 2qyt_A 88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG--ADIAERMRTYLPDTVV 135 (317)
T ss_dssp EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS--SSHHHHHTTTSCTTTB
T ss_pred EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC--CCcHHHHHHHCCCCcE
Confidence 99999653 44444 3455567789999999877 443 556666644443
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-06 Score=87.64 Aligned_cols=91 Identities=20% Similarity=0.102 Sum_probs=68.1
Q ss_pred cccCCeEEeeccchH-HHHHHHHHHhCCCEEEEECCCCCch--hhhhcC--ce-e-----c--CCHHHHHhcCCEEEEec
Q psy7383 172 RIRGDTLGIVGLGRI-GSAVALRAKAFGFNVIFYDPYLPDG--IEKSLG--LT-R-----V--YTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 172 ~L~gktVGIVGlG~I-G~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~g--v~-~-----~--~sLdelL~~sDvVil~l 238 (501)
++.|+++.|||.|.| |+.+|+.|...|++|+++||+.... ....++ .. . . .++++.++++|+||.++
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAt 253 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV 253 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECC
Confidence 599999999999986 9999999999999999999863211 111111 11 1 1 46889999999999998
Q ss_pred cCchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 239 TLNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 239 Plt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+.. .-+|..+. +|+|+++||++..
T Consensus 254 g~p---~~vI~~e~---vk~GavVIDVgi~ 277 (320)
T 1edz_A 254 PSE---NYKFPTEY---IKEGAVCINFACT 277 (320)
T ss_dssp CCT---TCCBCTTT---SCTTEEEEECSSS
T ss_pred CCC---cceeCHHH---cCCCeEEEEcCCC
Confidence 742 22376655 5899999999875
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.1e-06 Score=83.38 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=82.8
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+|+||++.|||.|. +|+.+|+.|...|++|++++++. .++++.++++|+||.+++. .++|..
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t-------------~~L~~~~~~ADIVI~Avg~----p~~I~~ 220 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-------------TDLKSHTTKADILIVAVGK----PNFITA 220 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHHHTTCSEEEECCCC----TTCBCG
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHhcccCCEEEECCCC----CCCCCH
Confidence 58999999999998 69999999999999999997541 3688999999999999873 456776
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEAS 324 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea 324 (501)
+. +|+|+++||++.-.+ + |++.| ||...+=. +. --.+||==+|.-.-+
T Consensus 221 ~~---vk~GavVIDvgi~~~-~----------g~l~G---DVdf~~v~-----~~----a~~iTPVPGGVGpmT 268 (285)
T 3l07_A 221 DM---VKEGAVVIDVGINHV-D----------GKIVG---DVDFAAVK-----DK----VAAITPVPGGVGPMT 268 (285)
T ss_dssp GG---SCTTCEEEECCCEEE-T----------TEEEC---SBCHHHHT-----TT----CSEECCSSSSSHHHH
T ss_pred HH---cCCCcEEEEecccCc-C----------Cceec---CccHHHHH-----hh----heEeCCCCCcChHHH
Confidence 54 599999999997543 1 56655 77422210 11 137899777765543
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.7e-06 Score=86.02 Aligned_cols=111 Identities=16% Similarity=0.140 Sum_probs=77.7
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce-------------ecCCHHHHHhcCCEEEEeccCc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT-------------RVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~-------------~~~sLdelL~~sDvVil~lPlt 241 (501)
.++|+|||.|.||..+|..|...|.+|.+|+|....+..++.|+. ...++++ +..+|+|++++|.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~- 80 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA- 80 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence 368999999999999999999999999999985211222233332 2246666 5899999999995
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCC------------------ccCHHHHHHHHHcCCceEE
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGG------------------LVDDDSLAAALKQGRIRAA 288 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~------------------vVde~aL~~aL~~g~I~GA 288 (501)
.+++.++ ++....+++++++|.+..|= +-.++.|.+.+...++.++
T Consensus 81 ~~~~~~~-~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~g 144 (335)
T 3ghy_A 81 PALESVA-AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGC 144 (335)
T ss_dssp HHHHHHH-GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEE
T ss_pred hhHHHHH-HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEE
Confidence 3455544 23344577899999999882 2234567777766665543
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=98.10 E-value=5.3e-06 Score=83.10 Aligned_cols=109 Identities=22% Similarity=0.270 Sum_probs=82.1
Q ss_pred cccCCeEEeeccchH-HHHHHHHHHhC--CCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 172 RIRGDTLGIVGLGRI-GSAVALRAKAF--GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 172 ~L~gktVGIVGlG~I-G~~iA~~L~af--G~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI 248 (501)
+++||++.|||.|.| |+.+|+.|... |++|++++++. .++.+.++++|+||.+++. .++|
T Consensus 155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t-------------~~L~~~~~~ADIVI~Avg~----p~~I 217 (281)
T 2c2x_A 155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT-------------RDLPALTRQADIVVAAVGV----AHLL 217 (281)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC-------------SCHHHHHTTCSEEEECSCC----TTCB
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch-------------hHHHHHHhhCCEEEECCCC----Cccc
Confidence 589999999999986 99999999999 89999997543 3789999999999999873 3467
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHH
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEAS 324 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea 324 (501)
..+. +|+|+++||++.-.+.| | +.| ||- .+ .. + .--.+||==+|.-.-+
T Consensus 218 ~~~~---vk~GavVIDVgi~r~~~----------g-lvG---DVd-~~-v~--~------~a~~iTPVPGGVGpmT 266 (281)
T 2c2x_A 218 TADM---VRPGAAVIDVGVSRTDD----------G-LVG---DVH-PD-VW--E------LAGHVSPNPGGVGPLT 266 (281)
T ss_dssp CGGG---SCTTCEEEECCEEEETT----------E-EEE---SBC-GG-GG--G------TCSEEECSSSSSHHHH
T ss_pred CHHH---cCCCcEEEEccCCCCCC----------C-ccC---ccc-cc-hh--h------heeeecCCCCCccHHH
Confidence 7665 58999999999765432 3 433 875 22 11 1 1236899777765533
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.5e-06 Score=82.53 Aligned_cols=105 Identities=18% Similarity=0.114 Sum_probs=74.5
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
++++.|||.|.+|++++..|...|.+|.+++|+..+. .. ..++... +++++ .++|+||.++|........++.+.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~ 194 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLGCDCF-MEPPK-SAFDLIINATSASLHNELPLNKEV 194 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSSCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCCChHH
Confidence 7899999999999999999999999999999987643 22 4454433 44444 389999999997533223455553
Q ss_pred Hh-cCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 253 IK-QMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 253 l~-~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
+. .++++.+++|+.... .+. |++..++..+
T Consensus 195 l~~~l~~~~~v~D~vY~P--~T~-ll~~A~~~G~ 225 (269)
T 3phh_A 195 LKGYFKEGKLAYDLAYGF--LTP-FLSLAKELKT 225 (269)
T ss_dssp HHHHHHHCSEEEESCCSS--CCH-HHHHHHHTTC
T ss_pred HHhhCCCCCEEEEeCCCC--chH-HHHHHHHCcC
Confidence 33 567888888888765 444 5554454433
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=80.98 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=77.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCc---------------eecCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGL---------------TRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv---------------~~~~sLdelL~~sDvVil~lPl 240 (501)
++|+|||.|.||..+|..|...|.+|.+|+|... +..++.|+ ....+++++...+|+|++++|.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~ 81 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV 81 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH-HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH-HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence 5899999999999999999999999999998752 22222221 1224566766689999999996
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceE
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRA 287 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~G 287 (501)
.. ++.++ ++....+++++++|.+.-| +-.++.|.+.+...++.+
T Consensus 82 ~~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl~ 125 (320)
T 3i83_A 82 VE-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVIS 125 (320)
T ss_dssp CT-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEEE
T ss_pred CC-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEEE
Confidence 53 34433 4455667889999999887 223577777776666554
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=9.5e-06 Score=81.98 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=91.8
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++|+++.|||.|. +|+.+|+.|...|++|++++++ ..++.+.++++|+||.+++. .++|..
T Consensus 162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~-------------t~~L~~~~~~ADIVI~Avg~----p~~I~~ 224 (301)
T 1a4i_A 162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK-------------TAHLDEEVNKGDILVVATGQ----PEMVKG 224 (301)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------CSSHHHHHTTCSEEEECCCC----TTCBCG
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC-------------cccHHHHhccCCEEEECCCC----cccCCH
Confidence 58999999999997 6999999999999999999743 13789999999999999874 346776
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC-CceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHH
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQG-RIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g-~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~ 329 (501)
+. +|+|+++||++.-.+-|.. -++| ++.| ||-..+ .. +. --.+||==+|.-.-+..-+.
T Consensus 225 ~~---vk~GavVIDVgi~~~~d~~-----~~~g~klvG---DVdf~~-v~----~~----a~~iTPVPGGVGpmTiamLl 284 (301)
T 1a4i_A 225 EW---IKPGAIVIDCGINYVPDDK-----KPNGRKVVG---DVAYDE-AK----ER----ASFITPVPGGVGPMTVAMLM 284 (301)
T ss_dssp GG---SCTTCEEEECCCBC---------------CCBC---SBCHHH-HT----TT----CSEECCSSSSHHHHHHHHHH
T ss_pred HH---cCCCcEEEEccCCCccccc-----ccCCCeeec---cccHHH-hh----hh----ceEeCCCCCCccHHHHHHHH
Confidence 55 5899999999986543321 1234 5655 774222 10 01 23689987776655555555
Q ss_pred HHHHHHHHHHHh
Q psy7383 330 EMAASEIRRAIV 341 (501)
Q Consensus 330 ~~~~~ni~~~l~ 341 (501)
+.+++..++++.
T Consensus 285 ~Ntv~aa~~~~~ 296 (301)
T 1a4i_A 285 QSTVESAKRFLE 296 (301)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 555555555554
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.4e-06 Score=78.46 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=65.5
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhC-CCEEEEECCCCCc-hhhhhcCceec----CC---HHHH--HhcCCEEEEeccC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAF-GFNVIFYDPYLPD-GIEKSLGLTRV----YT---LQDL--LFQSDCVSLHCTL 240 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~af-G~~Vi~~dr~~~~-~~~~~~gv~~~----~s---Ldel--L~~sDvVil~lPl 240 (501)
++.+++|.|+|+|.+|+.+|+.|+.. |++|+++|++... ...+..|+..+ .+ ++++ +.++|+|+++++.
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~ 115 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH 115 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence 46788999999999999999999999 9999999987532 22233454322 12 2333 5689999999986
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINva 266 (501)
...+..++ ..++.+.+...+|...
T Consensus 116 ~~~~~~~~--~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 116 HQGNQTAL--EQLQRRNYKGQIAAIA 139 (183)
T ss_dssp HHHHHHHH--HHHHHTTCCSEEEEEE
T ss_pred hHHHHHHH--HHHHHHCCCCEEEEEE
Confidence 55544443 4566677666666543
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=79.16 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=77.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce--------------ecCCHHHHHhcCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT--------------RVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~--------------~~~sLdelL~~sDvVil~lPlt 241 (501)
++|+|||.|.||..+|..|...|.+|.+|+|.. .+..++.|+. ...+.++ +..+|+|++++|..
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~ 80 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD-YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTF 80 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT-HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc-HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCC
Confidence 579999999999999999999999999999875 2222233321 1234544 68999999999854
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCCccC-HHHHHHHHHcCCceEEE
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGGLVD-DDSLAAALKQGRIRAAA 289 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~vVd-e~aL~~aL~~g~I~GAa 289 (501)
+++.++ ++.-..+++++++|.+.-| ++ ++.|.+.+...++.++.
T Consensus 81 -~~~~~l-~~l~~~l~~~~~iv~l~nG--i~~~~~l~~~~~~~~v~~~~ 125 (312)
T 3hn2_A 81 -ANSRYE-ELIRPLVEEGTQILTLQNG--LGNEEALATLFGAERIIGGV 125 (312)
T ss_dssp -GGGGHH-HHHGGGCCTTCEEEECCSS--SSHHHHHHHHTCGGGEEEEE
T ss_pred -CcHHHH-HHHHhhcCCCCEEEEecCC--CCcHHHHHHHCCCCcEEEEE
Confidence 344443 3455668899999999988 54 56677777666665543
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.7e-05 Score=69.75 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=64.0
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhh-hcCceec----CC---HHHH-HhcCCEEEEeccCc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEK-SLGLTRV----YT---LQDL-LFQSDCVSLHCTLN 241 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~-~~gv~~~----~s---Ldel-L~~sDvVil~lPlt 241 (501)
.+.+++|.|+|+|.||+.+++.|+..|.+|+++|++... ...+ ..+...+ .+ +.+. +.++|+|+++++..
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~ 95 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDD 95 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCH
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCc
Confidence 467899999999999999999999999999999987543 1222 3344322 12 2222 66899999999854
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
..+..+ ...++.+.+...+|-..++.
T Consensus 96 ~~~~~~--~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 96 STNFFI--SMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp HHHHHH--HHHHHHTSCCSEEEEECSSG
T ss_pred HHHHHH--HHHHHHHCCCCeEEEEECCH
Confidence 332222 33455555666666666553
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.4e-05 Score=78.12 Aligned_cols=89 Identities=26% Similarity=0.375 Sum_probs=67.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHh-CC-CEEEEECCCCCchhhhh----cCc--eecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKA-FG-FNVIFYDPYLPDGIEKS----LGL--TRVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~a-fG-~~Vi~~dr~~~~~~~~~----~gv--~~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
..++|+|||.|.||+.+++.|.. ++ .+|.+|||+..+.+.+. .|+ ..+ ++++++++||+|++++|.+ .
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---~ 195 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---T 195 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---S
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---C
Confidence 45799999999999999999876 44 58999999922222222 344 344 8999999999999999864 3
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
-+|.. +.+|+|+++++++.-.
T Consensus 196 pvl~~---~~l~~G~~V~~vGs~~ 216 (313)
T 3hdj_A 196 PLFAG---QALRAGAFVGAIGSSL 216 (313)
T ss_dssp CSSCG---GGCCTTCEEEECCCSS
T ss_pred cccCH---HHcCCCcEEEECCCCC
Confidence 55653 4689999999998753
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.2e-06 Score=86.43 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=56.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEE-EEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNV-IFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~V-i~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
++|||||+|.||+.+++.|... ++| .+||++... ...+..+. ...+++++++++|+|++++|... . .+.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~-----~~v 74 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-I-----KTV 74 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-H-----HHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-H-----HHH
Confidence 4799999999999999999777 888 589987532 12223455 45577888899999999999542 2 334
Q ss_pred HhcC-CCCcEEEEcCCC
Q psy7383 253 IKQM-RPGAFLVNTARG 268 (501)
Q Consensus 253 l~~M-K~gAilINvaRG 268 (501)
+..+ +++.+|||++-+
T Consensus 75 ~~~l~~~~~ivi~~s~~ 91 (276)
T 2i76_A 75 ANHLNLGDAVLVHCSGF 91 (276)
T ss_dssp HTTTCCSSCCEEECCSS
T ss_pred HHHhccCCCEEEECCCC
Confidence 4444 688999999855
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.6e-05 Score=78.44 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=73.2
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCc-------------eecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGL-------------TRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv-------------~~~~sLdelL~~sDvVil~l 238 (501)
...++|+|||.|.||..+|..|...|.+|.+| ++... +...+.|. ....++++ +..+|+|++++
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav 94 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV 94 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence 35678999999999999999999999999999 65321 11222221 22345544 58999999999
Q ss_pred cCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCH-HHHHHHHHcCCce
Q psy7383 239 TLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDD-DSLAAALKQGRIR 286 (501)
Q Consensus 239 Plt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde-~aL~~aL~~g~I~ 286 (501)
|.. +++.++ ++....+++++++|.+.-| ++. +.|.+.+. .++.
T Consensus 95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nG--i~~~~~l~~~~~-~~vl 138 (318)
T 3hwr_A 95 KST-DTQSAA-LAMKPALAKSALVLSLQNG--VENADTLRSLLE-QEVA 138 (318)
T ss_dssp CGG-GHHHHH-HHHTTTSCTTCEEEEECSS--SSHHHHHHHHCC-SEEE
T ss_pred ccc-cHHHHH-HHHHHhcCCCCEEEEeCCC--CCcHHHHHHHcC-CcEE
Confidence 965 555554 3455678899999999888 554 45555554 3444
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.2e-05 Score=82.99 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=75.7
Q ss_pred cccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC-------CchhhhhcCceecCCHHHHHhcCCEEEEeccCch
Q psy7383 170 CARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL-------PDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 170 ~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~-------~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
..-|+||||+|||||.=|.+=|..|+-.|.+|++--|.. +-..+.+.|++. .+.+|+++++|+|.+.+|...
T Consensus 32 ~~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v-~~~~eA~~~ADvV~~L~PD~~ 110 (491)
T 3ulk_A 32 ASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQ 110 (491)
T ss_dssp TGGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEE-EEHHHHGGGCSEEEECSCGGG
T ss_pred hHHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEe-cCHHHHHHhCCEEEEeCChhh
Confidence 345999999999999999999999999999998865521 112345567764 489999999999999999653
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+ ..++ ++....||+|+.|+ .+.|
T Consensus 111 q-~~vy-~~I~p~lk~G~~L~-faHG 133 (491)
T 3ulk_A 111 H-SDVV-RTVQPLMKDGAALG-YSHG 133 (491)
T ss_dssp H-HHHH-HHHGGGSCTTCEEE-ESSC
T ss_pred H-HHHH-HHHHhhCCCCCEEE-ecCc
Confidence 3 3344 56999999999887 6777
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.2e-05 Score=77.93 Aligned_cols=106 Identities=18% Similarity=0.118 Sum_probs=80.9
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc---h---hhh------hc--------------CceecCCHHHHH
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD---G---IEK------SL--------------GLTRVYTLQDLL 228 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~---~---~~~------~~--------------gv~~~~sLdelL 228 (501)
-.+|+|||.|.||+.+|..+...|++|+.||+.... . ..+ +. .+....++++.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~ 85 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV 85 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence 468999999999999999999999999999986421 0 000 00 123345788999
Q ss_pred hcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 229 FQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 229 ~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
++||+|+=++|.+-+.+.-+-++.=+.++++++|-....+ +....|.+.++.
T Consensus 86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~ 137 (319)
T 3ado_A 86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH 137 (319)
T ss_dssp TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT
T ss_pred ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC
Confidence 9999999999998888887777888889999998655555 556667666543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.86 E-value=2.1e-05 Score=65.79 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=58.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCch-hhhhcCceec-------CCHHHHHhcCCEEEEeccCchhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPDG-IEKSLGLTRV-------YTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~~-~~~~~gv~~~-------~sLdelL~~sDvVil~lPlt~~T 244 (501)
.+++|+|+|.|.||+.+++.|...| ++|+++|++.... .....++... .++++++.++|+|+.++|... +
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~ 82 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T 82 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence 3578999999999999999999999 8999999875321 1122233211 235567889999999987432 2
Q ss_pred hhcccHHHHhcCCCCcEEEEcC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINva 266 (501)
..++. ...+.|..+++++
T Consensus 83 ~~~~~----~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 83 PIIAK----AAKAAGAHYFDLT 100 (118)
T ss_dssp HHHHH----HHHHTTCEEECCC
T ss_pred HHHHH----HHHHhCCCEEEec
Confidence 22221 1234566777764
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2.6e-05 Score=80.17 Aligned_cols=91 Identities=16% Similarity=0.262 Sum_probs=68.0
Q ss_pred cCCeEEeeccchHHHHHHHHHH-hCC-CEEEEECCCCCc--hhhhhc----C--ceecCCHHHHHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAK-AFG-FNVIFYDPYLPD--GIEKSL----G--LTRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~-afG-~~Vi~~dr~~~~--~~~~~~----g--v~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
..++|+|||+|.+|+.+++.+. ..+ .+|.+|||+... ...+.+ + +..+.+++++++++|+|++++|.. .
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-~ 206 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-A 206 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-S
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-C
Confidence 4679999999999999998875 344 589999998543 222222 4 344568999999999999999965 2
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
...++.. +.+++|..+++++..
T Consensus 207 ~~pvl~~---~~l~~G~~V~~vgs~ 228 (350)
T 1x7d_A 207 YATIITP---DMLEPGMHLNAVGGD 228 (350)
T ss_dssp EEEEECG---GGCCTTCEEEECSCC
T ss_pred CCceecH---HHcCCCCEEEECCCC
Confidence 3345543 468999999999864
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.84 E-value=5.8e-05 Score=64.94 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=59.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcCceec----CCHHHH----HhcCCEEEEeccCchhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRV----YTLQDL----LFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~----~sLdel----L~~sDvVil~lPlt~~T 244 (501)
+++|+|+|+|.+|+.+++.|...|++|+++|++.... .....++..+ .+.+.+ +.++|+|+++++.....
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~ 83 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN 83 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence 5789999999999999999999999999999864321 1122344321 122222 56899999998854332
Q ss_pred hhcccHHHHhcCCCCcEEEEc
Q psy7383 245 HHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINv 265 (501)
..-....+.++++.+++-+
T Consensus 84 --~~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 84 --LMSSLLAKSYGINKTIARI 102 (140)
T ss_dssp --HHHHHHHHHTTCCCEEEEC
T ss_pred --HHHHHHHHHcCCCEEEEEe
Confidence 2223455667777666544
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.78 E-value=3.7e-05 Score=67.90 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=61.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CCH---HHH-HhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YTL---QDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~sL---del-L~~sDvVil~lPlt~~T~ 245 (501)
.++|.|+|+|.+|+.+|+.|+..|++|+++|+.... ...+..|+..+ .+. +++ +.++|+|+++++...++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~ 86 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG 86 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence 357999999999999999999999999999987543 22233455422 122 221 468999999999765554
Q ss_pred hcccHHHHhcCCCCcEEEEc
Q psy7383 246 HLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINv 265 (501)
.++ ..++.+.++..+|-.
T Consensus 87 ~~~--~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 87 EIV--ASARAKNPDIEIIAR 104 (140)
T ss_dssp HHH--HHHHHHCSSSEEEEE
T ss_pred HHH--HHHHHHCCCCeEEEE
Confidence 443 355666666666643
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.9e-05 Score=82.57 Aligned_cols=83 Identities=24% Similarity=0.213 Sum_probs=69.5
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCC---EEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGF---NVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~---~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
...+|.|||. |..|+..++.++++|+ .|.+||.+.. ..|.. + +.+.++|+||.++......-.+|.
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~-----~~g~~----~-~~i~~aDivIn~vlig~~aP~Lvt 282 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKET-----SRGGP----F-DEIPQADIFINCIYLSKPIAPFTN 282 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHH-----TTCSC----C-THHHHSSEEEECCCCCSSCCCSCC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccc-----ccCCc----h-hhHhhCCEEEECcCcCCCCCcccC
Confidence 4668999999 9999999999999998 8999997531 11222 2 346699999999998777778999
Q ss_pred HHHHhcC-CCCcEEEEcC
Q psy7383 250 EFTIKQM-RPGAFLVNTA 266 (501)
Q Consensus 250 ~~~l~~M-K~gAilINva 266 (501)
++.++.| |+|++|||++
T Consensus 283 ~e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 283 MEKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp HHHHCCTTCCCCEEEETT
T ss_pred HHHHhcCcCCCeEEEEEe
Confidence 9999999 9999999997
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=4.1e-05 Score=66.11 Aligned_cols=94 Identities=17% Similarity=0.237 Sum_probs=59.3
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CCHH---HH-HhcCCEEEEeccCchh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YTLQ---DL-LFQSDCVSLHCTLNEH 243 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~sLd---el-L~~sDvVil~lPlt~~ 243 (501)
+.+++|.|+|+|.||+.+++.|...|++|+++|+.... ......+...+ .+.+ ++ +.++|+|+++++...+
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 83 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence 56789999999999999999999999999999986432 11122233211 1222 22 5689999999886422
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.++.-....+.+.+. .+|-...+
T Consensus 84 -~~~~~~~~~~~~~~~-~ii~~~~~ 106 (144)
T 2hmt_A 84 -ASTLTTLLLKELDIP-NIWVKAQN 106 (144)
T ss_dssp -HHHHHHHHHHHTTCS-EEEEECCS
T ss_pred -HHHHHHHHHHHcCCC-eEEEEeCC
Confidence 222223445556666 55554444
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.70 E-value=7.7e-05 Score=75.02 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=66.9
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchhh------h-------hcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGIE------K-------SLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~~------~-------~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
.++|+|||.|.||..+|..|...|+ +|..||+....... . ...+....++ +.+++||+|+++++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~ 82 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI 82 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 4689999999999999999998888 99999987542111 0 0122322466 678999999999832
Q ss_pred c-----------hhhhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q psy7383 241 N-----------EHNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAAL 280 (501)
Q Consensus 241 t-----------~~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL 280 (501)
. +++..++. .+.+....+++++|+++...-+....+.+..
T Consensus 83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~ 135 (317)
T 2ewd_A 83 PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS 135 (317)
T ss_dssp SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence 1 11111110 1222333569999999875434444444443
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=2.2e-05 Score=77.43 Aligned_cols=94 Identities=10% Similarity=0.123 Sum_probs=59.4
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhc----CceecCCHHHHHh-cCCEEEEeccCchhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSL----GLTRVYTLQDLLF-QSDCVSLHCTLNEHN 244 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~----gv~~~~sLdelL~-~sDvVil~lPlt~~T 244 (501)
++.++++.|+|.|.+|+.++..|...|.+|+++||+..+ ...+.. .+. ..+++++.+ ++|+||.++|.....
T Consensus 116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~-~~~~~~~~~~~~DivIn~t~~~~~~ 194 (272)
T 1p77_A 116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQ-AVSMDSIPLQTYDLVINATSAGLSG 194 (272)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEE-EEEGGGCCCSCCSEEEECCCC----
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeE-EeeHHHhccCCCCEEEECCCCCCCC
Confidence 378899999999999999999999999999999998542 222221 121 224445434 899999999865321
Q ss_pred hh-cccHHHHhcCCCCcEEEEcCCCC
Q psy7383 245 HH-LINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 245 ~~-lI~~~~l~~MK~gAilINvaRG~ 269 (501)
.- -+..+. ++++.+++|+.-..
T Consensus 195 ~~~~i~~~~---l~~~~~v~D~~y~p 217 (272)
T 1p77_A 195 GTASVDAEI---LKLGSAFYDMQYAK 217 (272)
T ss_dssp ---CCCHHH---HHHCSCEEESCCCT
T ss_pred CCCCCCHHH---cCCCCEEEEeeCCC
Confidence 00 022222 23455666665543
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00012 Score=65.67 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=74.4
Q ss_pred CCeEEeecc----chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 175 GDTLGIVGL----GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 175 gktVGIVGl----G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
-++|+|||. |.+|..+++.|+..|++|+..++... .-.|+..+.+++|+....|++++++|. +....++.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~----~i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~- 95 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE----EVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE- 95 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS----EETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCC----eECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH-
Confidence 578999999 79999999999999999777776532 124666556899998899999999995 45566653
Q ss_pred HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 251 FTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+..+. ..++++++.+ ..++.+.+.+++..+.
T Consensus 96 ~~~~~-gi~~i~~~~g----~~~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 96 QAIKK-GAKVVWFQYN----TYNREASKKADEAGLI 126 (144)
T ss_dssp HHHHH-TCSEEEECTT----CCCHHHHHHHHHTTCE
T ss_pred HHHHc-CCCEEEECCC----chHHHHHHHHHHcCCE
Confidence 33333 3346665533 2378888888887765
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.67 E-value=7.7e-05 Score=66.85 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=75.0
Q ss_pred cCCeEEeecc----chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 174 RGDTLGIVGL----GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 174 ~gktVGIVGl----G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
+-++|+|||. |++|..+++.|+..|++|+..|+.... ..-.|...+.+++|+-...|++++++|. +....+++
T Consensus 12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~--~~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~ 88 (140)
T 1iuk_A 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG--EELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP 88 (140)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT--SEETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCccc--CcCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH
Confidence 4578999999 899999999999999997777765211 1124666556899988899999999996 55666663
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+..+. ..++++++.+- .++++.+.+++..+.
T Consensus 89 -~~~~~-gi~~i~~~~g~----~~~~~~~~a~~~Gir 119 (140)
T 1iuk_A 89 -EVLAL-RPGLVWLQSGI----RHPEFEKALKEAGIP 119 (140)
T ss_dssp -HHHHH-CCSCEEECTTC----CCHHHHHHHHHTTCC
T ss_pred -HHHHc-CCCEEEEcCCc----CHHHHHHHHHHcCCE
Confidence 44443 33466665433 267888888887665
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00012 Score=74.29 Aligned_cols=87 Identities=11% Similarity=0.121 Sum_probs=65.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHh-C-CCEEEEECCCCCch--hhhhc-----CceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKA-F-GFNVIFYDPYLPDG--IEKSL-----GLTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~a-f-G~~Vi~~dr~~~~~--~~~~~-----gv~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
..++|+|||+|.+|+.+++.|.. . ..+|.+|||+.... ..+.+ .+. +.++++++ ++|+|++++|..
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~--- 198 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSR--- 198 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCS---
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCC---
Confidence 46799999999999999999876 3 35899999986432 22221 244 66899999 999999999954
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG 268 (501)
..++.. ..+++|..+++++.-
T Consensus 199 ~pv~~~---~~l~~G~~V~~ig~~ 219 (322)
T 1omo_A 199 KPVVKA---EWVEEGTHINAIGAD 219 (322)
T ss_dssp SCCBCG---GGCCTTCEEEECSCC
T ss_pred CceecH---HHcCCCeEEEECCCC
Confidence 355543 468999999999643
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.64 E-value=7.3e-05 Score=74.25 Aligned_cols=107 Identities=16% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCeEEeeccchHHHH-HHHHHHh-CCCEEE-EECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 175 GDTLGIVGLGRIGSA-VALRAKA-FGFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 175 gktVGIVGlG~IG~~-iA~~L~a-fG~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
-.+|||||+|.||+. +++.++. -++++. ++|+.... ...+..++..+.++++++.+.|+|++++|........
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~-- 83 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII-- 83 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH--
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH--
Confidence 368999999999996 8888876 478877 68987543 2334567666779999999999999999954322221
Q ss_pred HHHHhcCCCCc-EEEE-cCCCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGA-FLVN-TARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gA-ilIN-vaRG~vVde~aL~~aL~~g~I~ 286 (501)
... ++.|. +|+. -.--.+-+.+.|.++.++..+.
T Consensus 84 ~~a---l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~ 119 (308)
T 3uuw_A 84 KIL---LNLGVHVYVDKPLASTVSQGEELIELSTKKNLN 119 (308)
T ss_dssp HHH---HHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCC
T ss_pred HHH---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 223 33343 4443 2223344566788877776554
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.63 E-value=8.8e-05 Score=73.04 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=64.6
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCc---eecCCHHHHH-hcCCEEEEeccCchhhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGL---TRVYTLQDLL-FQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv---~~~~sLdelL-~~sDvVil~lPlt~~T~ 245 (501)
++.++++.|+|.|.||+.+++.|...|.+|+++||+..+ ...+..+. ..+.+++++. .++|+|+.+++.... .
T Consensus 116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~ 194 (271)
T 1nyt_A 116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-G 194 (271)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-T
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-C
Confidence 377899999999999999999999999999999987532 22222221 1122444444 589999999986543 1
Q ss_pred hc--ccHHHHhcCCCCcEEEEcCCCC
Q psy7383 246 HL--INEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 246 ~l--I~~~~l~~MK~gAilINvaRG~ 269 (501)
.+ +.. ..++++.+++|+.-..
T Consensus 195 ~~~~i~~---~~l~~~~~v~D~~y~p 217 (271)
T 1nyt_A 195 DIPAIPS---SLIHPGIYCYDMFYQK 217 (271)
T ss_dssp CCCCCCG---GGCCTTCEEEESCCCS
T ss_pred CCCCCCH---HHcCCCCEEEEeccCC
Confidence 11 222 2357788888887654
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00012 Score=73.33 Aligned_cols=105 Identities=17% Similarity=0.250 Sum_probs=68.4
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEE-EECCCCCc--hhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI~ 249 (501)
.+|||||+|.||+.+++.++.. +++|+ ++|+.... ...+..++. +.+++++++ +.|+|++++|........
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~-- 80 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLI-- 80 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHH--
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHH--
Confidence 4799999999999999999886 78876 68887543 234456777 779999998 899999999854332211
Q ss_pred HHHHhcCCCCc-EEEEcC-CCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGA-FLVNTA-RGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gA-ilINva-RG~vVde~aL~~aL~~g~I~ 286 (501)
... ++.|. +|+.-- --.+-+.+.|.++.++..+.
T Consensus 81 ~~a---l~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~ 116 (331)
T 4hkt_A 81 ERF---ARAGKAIFCEKPIDLDAERVRACLKVVSDTKAK 116 (331)
T ss_dssp HHH---HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC
T ss_pred HHH---HHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCe
Confidence 222 23332 333221 22233445566666665543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0001 Score=64.45 Aligned_cols=89 Identities=13% Similarity=0.040 Sum_probs=56.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CCHHHH----HhcCCEEEEeccCchh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YTLQDL----LFQSDCVSLHCTLNEH 243 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~sLdel----L~~sDvVil~lPlt~~ 243 (501)
...++|.|+|+|.+|+.+|+.|...|++|+++|+.... ...+..++..+ .+.+.+ +.++|+|+++++..
T Consensus 4 ~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~-- 81 (141)
T 3llv_A 4 NGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDD-- 81 (141)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCH--
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCH--
Confidence 34578999999999999999999999999999987532 12223343321 122222 45799999998833
Q ss_pred hhhcccHHHHhcCCCCcEEE
Q psy7383 244 NHHLINEFTIKQMRPGAFLV 263 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilI 263 (501)
..+++-...++.+....+++
T Consensus 82 ~~n~~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 82 EFNLKILKALRSVSDVYAIV 101 (141)
T ss_dssp HHHHHHHHHHHHHCCCCEEE
T ss_pred HHHHHHHHHHHHhCCceEEE
Confidence 23344344555555333443
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00015 Score=72.31 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=71.5
Q ss_pred CeEEeeccchHHHH-HHHHHHhC-CCEEE-EECCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSA-VALRAKAF-GFNVI-FYDPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~~L~af-G~~Vi-~~dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+|||||+|.||+. +++.++.. ++++. ++|+..... ..+..++....+++++..+.|+|++++|......
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~----- 80 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFD----- 80 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHH-----
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHH-----
Confidence 47999999999996 88888764 77866 889876542 3344566555678887678999999999543221
Q ss_pred HHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHcCCce
Q psy7383 251 FTIKQMRPGA-FLVNT-ARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK~gA-ilINv-aRG~vVde~aL~~aL~~g~I~ 286 (501)
-....++.|. +|+.- .--.+-+.+.|.++.++..+.
T Consensus 81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~ 118 (319)
T 1tlt_A 81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT 118 (319)
T ss_dssp HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2223345554 56652 223345666788888887765
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.59 E-value=3e-05 Score=77.43 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=69.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhcC----ceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSLG----LTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~g----v~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
++.++++.|+|.|.+|+.++..|...|+ +|.+++|+..+. ..+..+ +. +.+++++..++|+||.++|.....
T Consensus 123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~-~~~~~~l~~~aDiIInaTp~gm~~ 201 (281)
T 3o8q_A 123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVK-AQAFEQLKQSYDVIINSTSASLDG 201 (281)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEE-EEEGGGCCSCEEEEEECSCCCC--
T ss_pred CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCee-EeeHHHhcCCCCEEEEcCcCCCCC
Confidence 4789999999999999999999999996 999999975432 222221 22 235666668899999999965322
Q ss_pred h-hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 245 H-HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 245 ~-~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
. -.+.. +.++++.+++|+.-.. ..+. |++..++
T Consensus 202 ~~~~l~~---~~l~~~~~V~DlvY~P-~~T~-ll~~A~~ 235 (281)
T 3o8q_A 202 ELPAIDP---VIFSSRSVCYDMMYGK-GYTV-FNQWARQ 235 (281)
T ss_dssp --CSCCG---GGEEEEEEEEESCCCS-SCCH-HHHHHHH
T ss_pred CCCCCCH---HHhCcCCEEEEecCCC-ccCH-HHHHHHH
Confidence 1 12332 3466777788876553 3333 3343443
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00014 Score=75.73 Aligned_cols=94 Identities=18% Similarity=0.122 Sum_probs=74.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC----CCch----------hhhhcC-ceecCCHHHHHhcCCEEE
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY----LPDG----------IEKSLG-LTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~----~~~~----------~~~~~g-v~~~~sLdelL~~sDvVi 235 (501)
.+.+.+|.|+|.|..|..+|+.|..+|. +|+++|++ .... ...... .....+|+|+++++|+++
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlI 268 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI 268 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEE
Confidence 4888999999999999999999999999 89999987 3221 111111 112347999999999998
Q ss_pred EeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q psy7383 236 LHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 236 l~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~v 270 (501)
-+. +-++|.++.++.|+++++++.+++...
T Consensus 269 G~S-----ap~l~t~emVk~Ma~~pIIfalSNPt~ 298 (388)
T 1vl6_A 269 GVS-----RGNILKPEWIKKMSRKPVIFALANPVP 298 (388)
T ss_dssp ECS-----CSSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred EeC-----CCCccCHHHHHhcCCCCEEEEcCCCCC
Confidence 763 149999999999999999999998653
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00012 Score=73.76 Aligned_cols=107 Identities=14% Similarity=0.225 Sum_probs=68.8
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEE-EECCCCCc--hhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI~ 249 (501)
.+|||||+|.||+.+++.++.. +++|+ ++|+.... ...+..++..+.++++++. +.|+|++++|........
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~-- 82 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLI-- 82 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHH--
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHH--
Confidence 4799999999999999999886 77876 68887543 2344567777789999998 899999999854332221
Q ss_pred HHHHhcCCCCcEEEEcC-CCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGAFLVNTA-RGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gAilINva-RG~vVde~aL~~aL~~g~I~ 286 (501)
...++.= ..+|+.-- --.+-+.+.|.++.++..+.
T Consensus 83 ~~al~~g--k~v~~EKP~~~~~~~~~~l~~~a~~~g~~ 118 (344)
T 3euw_A 83 TRAVERG--IPALCEKPIDLDIEMVRACKEKIGDGASK 118 (344)
T ss_dssp HHHHHTT--CCEEECSCSCSCHHHHHHHHHHHGGGGGG
T ss_pred HHHHHcC--CcEEEECCCCCCHHHHHHHHHHHHhcCCe
Confidence 2222221 12444321 22223445566666655443
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0001 Score=76.14 Aligned_cols=88 Identities=11% Similarity=-0.021 Sum_probs=62.5
Q ss_pred CeEEeeccchHHHHHHHHHHh-CCCEEEEEC---CCCCc-hh-hhhcC---------c---------e-ecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKA-FGFNVIFYD---PYLPD-GI-EKSLG---------L---------T-RVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~a-fG~~Vi~~d---r~~~~-~~-~~~~g---------v---------~-~~~sLdelL~~ 230 (501)
++|+|||.|.||..+|..|.. .|.+|.+|| ++... .. .+..+ . . ...++++++..
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG 82 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence 479999999999999999977 599999999 43211 11 11111 1 1 23468888999
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
+|+|++++|... .+.++ ++....++++++||..
T Consensus 83 aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 83 ADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL 115 (404)
T ss_dssp CSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred CCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence 999999999543 34443 3455567889999985
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00012 Score=74.34 Aligned_cols=66 Identities=21% Similarity=0.191 Sum_probs=53.5
Q ss_pred CeEEeeccchHHHHHHHHHHhC--CCEEE-EECCCCCc--hhhhhcCceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--GFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+|.||+..++.++.. +++++ ++|++... ...+..++..+.+++++++ +.|+|++++|..
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 86 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSG 86 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGG
T ss_pred ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcH
Confidence 5799999999999999999887 78865 78887543 2334567777789999997 799999999954
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00014 Score=77.24 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--------------hhh-------hhcCceecCCHHHHHhcCCE
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--------------GIE-------KSLGLTRVYTLQDLLFQSDC 233 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--------------~~~-------~~~gv~~~~sLdelL~~sDv 233 (501)
=++|+|||+|-+|..+|..+...|++|++||..... ++. ....+....+.++.+++||+
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~ 100 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDA 100 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSE
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCc
Confidence 368999999999999999999999999999965321 100 01123344578889999999
Q ss_pred EEEeccCc------hhhhhccc--HHHHhcCC---CCcEEEEcCCCCccCHHHHH
Q psy7383 234 VSLHCTLN------EHNHHLIN--EFTIKQMR---PGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 234 Vil~lPlt------~~T~~lI~--~~~l~~MK---~gAilINvaRG~vVde~aL~ 277 (501)
+++|+|.- ++...+.. +...+.|| ++.++|.-|.-.+=..+.++
T Consensus 101 ~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~ 155 (444)
T 3vtf_A 101 TFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLV 155 (444)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHH
T ss_pred eEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHH
Confidence 99999831 11222221 22333344 68899999887665555544
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00014 Score=72.70 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=66.3
Q ss_pred eEEeeccchHHHHH-HHHHHhCCCEEE-EECCCCCc--hhhhhcCce-ecCCHHHHHh--cCCEEEEeccCchhhhhccc
Q psy7383 177 TLGIVGLGRIGSAV-ALRAKAFGFNVI-FYDPYLPD--GIEKSLGLT-RVYTLQDLLF--QSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 177 tVGIVGlG~IG~~i-A~~L~afG~~Vi-~~dr~~~~--~~~~~~gv~-~~~sLdelL~--~sDvVil~lPlt~~T~~lI~ 249 (501)
+|||||+|.||+.+ ++.++..+++|+ ++|++... ...+..++. .+.+++++++ +.|+|++++|.....
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~----- 76 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHR----- 76 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHH-----
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhH-----
Confidence 79999999999998 877766788865 68887533 233445653 4568999997 599999999843221
Q ss_pred HHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGA-FLVNT-ARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gA-ilINv-aRG~vVde~aL~~aL~~g~I~ 286 (501)
+-..+.|+.|. +++.- .-..+-+.+.|.++.++..+.
T Consensus 77 ~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~ 115 (332)
T 2glx_A 77 EQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVV 115 (332)
T ss_dssp HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCE
Confidence 11223344554 44432 122333445666666655443
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00017 Score=71.64 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=63.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhcC---ceecCCHHHHH-hcCCEEEEeccCchhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSLG---LTRVYTLQDLL-FQSDCVSLHCTLNEHN 244 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~g---v~~~~sLdelL-~~sDvVil~lPlt~~T 244 (501)
++.+|++.|+|.|.+|+.++..|...|+ +|.+++|+..+. ..+..+ +.. .+++++- .++|+||.++|..-..
T Consensus 117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~-~~~~~l~~~~~DivInaTp~gm~~ 195 (272)
T 3pwz_A 117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRI-SRYEALEGQSFDIVVNATSASLTA 195 (272)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEE-ECSGGGTTCCCSEEEECSSGGGGT
T ss_pred CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeE-eeHHHhcccCCCEEEECCCCCCCC
Confidence 4789999999999999999999999996 999999986432 222222 222 2455543 7899999999864321
Q ss_pred h-hcccHHHHhcCCCCcEEEEcCCC
Q psy7383 245 H-HLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 245 ~-~lI~~~~l~~MK~gAilINvaRG 268 (501)
. -.+.. +.++++.+++|+.-.
T Consensus 196 ~~~~i~~---~~l~~~~~V~DlvY~ 217 (272)
T 3pwz_A 196 DLPPLPA---DVLGEAALAYELAYG 217 (272)
T ss_dssp CCCCCCG---GGGTTCSEEEESSCS
T ss_pred CCCCCCH---HHhCcCCEEEEeecC
Confidence 1 12332 335667777766554
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00018 Score=72.21 Aligned_cols=106 Identities=21% Similarity=0.229 Sum_probs=68.7
Q ss_pred CeEEeeccchHHHHHHHHHH-h-CCCEE-EEECCCCCc--hhhhhcCc-eecCCHHHHHh--cCCEEEEeccCchhhhhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAK-A-FGFNV-IFYDPYLPD--GIEKSLGL-TRVYTLQDLLF--QSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~-a-fG~~V-i~~dr~~~~--~~~~~~gv-~~~~sLdelL~--~sDvVil~lPlt~~T~~l 247 (501)
.+|||||+|.||+.+++.++ . -+++| .++|++... ...+..++ ..+.++++++. +.|+|++++|.....
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~--- 85 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHP--- 85 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHH---
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHH---
Confidence 47999999999999999988 5 47885 568887543 23344566 45568999997 699999999843221
Q ss_pred ccHHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHcC-Cce
Q psy7383 248 INEFTIKQMRPGA-FLVNT-ARGGLVDDDSLAAALKQG-RIR 286 (501)
Q Consensus 248 I~~~~l~~MK~gA-ilINv-aRG~vVde~aL~~aL~~g-~I~ 286 (501)
+-.++.++.|. +++.- .--.+-+.+.|.++.++. .+.
T Consensus 86 --~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~ 125 (346)
T 3cea_A 86 --EMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI 125 (346)
T ss_dssp --HHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred --HHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence 22233445565 44431 111223445677877776 654
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00046 Score=68.84 Aligned_cols=94 Identities=16% Similarity=0.228 Sum_probs=64.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhc-------Cceec--CCHHHHHhcCCEEEEecc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSL-------GLTRV--YTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~-------gv~~~--~sLdelL~~sDvVil~lP 239 (501)
+++++++.|+|.|.+|+.++..|...|+ +|.+++|+..+. ..+.. .+... .++++.+.++|+||.++|
T Consensus 124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp 203 (283)
T 3jyo_A 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_dssp TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence 3789999999999999999999999999 799999986432 21111 12222 267888999999999998
Q ss_pred Cchhhh--hcccHHHHhcCCCCcEEEEcCCC
Q psy7383 240 LNEHNH--HLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt~~T~--~lI~~~~l~~MK~gAilINvaRG 268 (501)
..-... -.+. .+.++++.+++|+.-.
T Consensus 204 ~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~ 231 (283)
T 3jyo_A 204 MGMPAHPGTAFD---VSCLTKDHWVGDVVYM 231 (283)
T ss_dssp TTSTTSCSCSSC---GGGCCTTCEEEECCCS
T ss_pred CCCCCCCCCCCC---HHHhCCCCEEEEecCC
Confidence 532111 1122 2345666666666543
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00011 Score=73.45 Aligned_cols=106 Identities=12% Similarity=0.127 Sum_probs=69.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC---------CH-HHHHhcCCEEEEeccCchhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY---------TL-QDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~---------sL-delL~~sDvVil~lPlt~~T 244 (501)
++|+|||.|.||..+|..|. .|.+|.+|+|+... +..++.|+.... +. ++.+..+|+|+++++.. ++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~ 80 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL 80 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence 68999999999999999999 99999999987532 222333432210 01 24567899999999843 34
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCH-HHHHHHHHcCCceEE
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARGGLVDD-DSLAAALKQGRIRAA 288 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG~vVde-~aL~~aL~~g~I~GA 288 (501)
..++ +.++.+.+++ +|.+.-| +.. +.|.+.+...++.++
T Consensus 81 ~~~l--~~l~~~~~~~-ivs~~nG--i~~~e~l~~~~~~~~vl~g 120 (307)
T 3ego_A 81 QSVF--SSLERIGKTN-ILFLQNG--MGHIHDLKDWHVGHSIYVG 120 (307)
T ss_dssp HHHH--HHTTSSCCCE-EEECCSS--SHHHHHHHTCCCSCEEEEE
T ss_pred HHHH--HHhhcCCCCe-EEEecCC--ccHHHHHHHhCCCCcEEEE
Confidence 4443 3344455666 8888887 444 344444445555443
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.47 E-value=9.2e-05 Score=73.85 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=67.1
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEE-EEECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNV-IFYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~V-i~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI~~~ 251 (501)
.+|||||+|.||+.+++.++.. ++++ .++|+...........+..+.+++++++ ++|+|++++|..... +-
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~-----~~ 85 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHA-----EI 85 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHH-----HH
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHH-----HH
Confidence 4799999999999999999886 6775 4788764321111111444568999996 799999999843221 11
Q ss_pred HHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHcCCce
Q psy7383 252 TIKQMRPGA-FLVNT-ARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 252 ~l~~MK~gA-ilINv-aRG~vVde~aL~~aL~~g~I~ 286 (501)
..+.++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus 86 ~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~ 122 (315)
T 3c1a_A 86 TLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM 122 (315)
T ss_dssp HHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence 223345554 55552 222334556777777765544
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00017 Score=73.18 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=53.3
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEE-EECCCCCc--hhhhhcCceecCCHHHHH--hcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLL--FQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL--~~sDvVil~lPlt~ 242 (501)
.+|||||+|.||+..++.++.. +++|+ ++|+.... ...+..++..+.++++++ .+.|+|++++|...
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~ 78 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDK 78 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTS
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHH
Confidence 4799999999999999999887 88865 78887543 233456777677999999 56999999999643
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00023 Score=71.63 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=52.5
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEE-EECCCCCc--hhhhhcCc-eecCCHHHHHh--cCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVI-FYDPYLPD--GIEKSLGL-TRVYTLQDLLF--QSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~gv-~~~~sLdelL~--~sDvVil~lPlt~ 242 (501)
.+|||||+|.||+.+++.++.. +++|+ ++|++... ...+..++ ..+.++++++. +.|+|++++|...
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 79 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQG 79 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGG
T ss_pred EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHH
Confidence 5899999999999999999885 67876 67877543 23345566 35578999998 8999999999543
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00022 Score=72.76 Aligned_cols=66 Identities=24% Similarity=0.250 Sum_probs=52.7
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEE-EECCCCCc-hhhhhcCceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVI-FYDPYLPD-GIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi-~~dr~~~~-~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+|.||+..++.++.. +++|. ++|++... ...+..++..+.++++++. +.|+|++++|..
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~ 76 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPND 76 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGG
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence 4799999999999999999887 78876 57876533 2234567776779999998 789999999854
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00027 Score=71.81 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=52.8
Q ss_pred CCeEEeeccchHHH-HHHHHHHhC-CCEEE-EECCCCCc--hhhhhcCceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 175 GDTLGIVGLGRIGS-AVALRAKAF-GFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVGlG~IG~-~iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt 241 (501)
-.+|||||+|.||+ .+++.++.. +++|. ++|+.... ...+..++..+.+++++++ +.|+|++++|..
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~ 100 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAV 100 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGG
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcH
Confidence 35899999999998 789999877 78875 67876532 2344567777789999997 589999999854
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00025 Score=70.95 Aligned_cols=65 Identities=25% Similarity=0.260 Sum_probs=48.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCCc--hhhhhc---------Ccee-cCCHHHHHhcCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPD--GIEKSL---------GLTR-VYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~--~~~~~~---------gv~~-~~sLdelL~~sDvVil~lPlt 241 (501)
++|+|||.|.||..+|..|...| .+|.+||+.... ...... .+.. ..++ +.+++||+|+++++..
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~ 80 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence 47999999999999999998878 799999987431 111111 1222 3466 6789999999999864
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00035 Score=70.93 Aligned_cols=95 Identities=14% Similarity=0.225 Sum_probs=63.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC---Cch--hhhh----cCc--e--ecCC---HHHHHhcCCEE
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL---PDG--IEKS----LGL--T--RVYT---LQDLLFQSDCV 234 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~---~~~--~~~~----~gv--~--~~~s---LdelL~~sDvV 234 (501)
+++||++.|+|.|.+|++++..|...|+ +|.+++|+. .+. ..+. .+. . ...+ +.+.+.++|+|
T Consensus 151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI 230 (315)
T 3tnl_A 151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF 230 (315)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence 4889999999999999999999999999 899999983 221 1111 111 1 1122 45668899999
Q ss_pred EEeccCch--hh-hhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 235 SLHCTLNE--HN-HHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 235 il~lPlt~--~T-~~lI~~~~l~~MK~gAilINvaRG 268 (501)
|.++|..- .+ ...+. ....++++.+++|+.-.
T Consensus 231 INaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~ 265 (315)
T 3tnl_A 231 TNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYK 265 (315)
T ss_dssp EECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCS
T ss_pred EECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccC
Confidence 99998531 11 11120 12345677777777554
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00024 Score=71.12 Aligned_cols=106 Identities=14% Similarity=0.225 Sum_probs=67.5
Q ss_pred CeEEeeccchHHH-HHHHHHHhC-CCEEEEECCCCCc--hhhhhcCcee-cCCHHHHH-hcCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGS-AVALRAKAF-GFNVIFYDPYLPD--GIEKSLGLTR-VYTLQDLL-FQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~-~iA~~L~af-G~~Vi~~dr~~~~--~~~~~~gv~~-~~sLdelL-~~sDvVil~lPlt~~T~~lI~ 249 (501)
.+|||||+|.||+ .+++.++.. +++|+++|++... ...+..++.. +.+..+++ .++|+|++++|.... ..+
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h-~~~-- 79 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVH-STL-- 79 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGH-HHH--
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhH-HHH--
Confidence 3799999999998 499988765 7888899987543 2334456543 33445555 789999999994321 111
Q ss_pred HHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGA-FLVNT-ARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gA-ilINv-aRG~vVde~aL~~aL~~g~I~ 286 (501)
..+.++.|. +|+.- .--.+-+.+.|.++.++..+.
T Consensus 80 --~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~ 116 (323)
T 1xea_A 80 --AAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP 116 (323)
T ss_dssp --HHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred --HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence 223344453 66653 122334556788888877665
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00024 Score=63.24 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=59.5
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc---hhhh--hcCceec-------CCHHHH-HhcCCEEEEeccCc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD---GIEK--SLGLTRV-------YTLQDL-LFQSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~---~~~~--~~gv~~~-------~sLdel-L~~sDvVil~lPlt 241 (501)
.++|.|+|+|.+|+.+++.|...|++|++.|+...+ .... ..++..+ ..++++ +.++|+|+++++..
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence 467999999999999999999999999999986421 1111 1233221 123444 77899999998754
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. .++.-....+.+.+...+|...+
T Consensus 83 ~--~n~~~~~~a~~~~~~~~ii~~~~ 106 (153)
T 1id1_A 83 A--DNAFVVLSAKDMSSDVKTVLAVS 106 (153)
T ss_dssp H--HHHHHHHHHHHHTSSSCEEEECS
T ss_pred H--HHHHHHHHHHHHCCCCEEEEEEC
Confidence 3 33333455666645444554433
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00031 Score=70.91 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=51.5
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEE-EECCCCCc--hhhhhcCce-ecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVI-FYDPYLPD--GIEKSLGLT-RVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~gv~-~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+|.||+.+++.++.. +++++ ++|+.... ...+..++. .+.+++++++ ++|+|++++|..
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 75 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTN 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCc
Confidence 3799999999999999999775 67876 68887533 233445653 5679999998 899999999854
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00039 Score=71.04 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=49.9
Q ss_pred CeEEeeccchHHHH-HHHHHHhC-CCEEE-EECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSA-VALRAKAF-GFNVI-FYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~~L~af-G~~Vi-~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+|.||+. .++.++.. +++|. ++|+.......+..+...+.+++++++ +.|+|++++|..
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 78 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNA 78 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGG
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChH
Confidence 47999999999997 77777766 78875 678765432222235666679999998 789999999854
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00044 Score=69.39 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=49.6
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEE-EECCCCCc--hhhhhcCce-ecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVI-FYDPYLPD--GIEKSLGLT-RVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~gv~-~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+|.||+.+++.++.. +++|. ++|++... ...+..++. .+.++++++. +.|+|++++|..
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 78 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQ 78 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGG
T ss_pred eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcH
Confidence 5799999999999999998765 56655 67887543 334455664 5679999998 799999999854
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.36 E-value=4.8e-05 Score=75.44 Aligned_cols=92 Identities=10% Similarity=0.049 Sum_probs=64.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCc---eecCCHHHHH-hcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGL---TRVYTLQDLL-FQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv---~~~~sLdelL-~~sDvVil~lPlt~~T~~lI~~ 250 (501)
++|+|||.|.||..+|..|...|.+|.+|+|+... ......|. ....+..+.+ ..+|+|++++|.. +++.++ +
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~ 80 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P 80 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence 57999999999999999999889999999987431 11111221 1111233444 7899999999854 445544 2
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q psy7383 251 FTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~ 269 (501)
+....+++++++|.+.-|=
T Consensus 81 ~l~~~l~~~~~iv~~~nGi 99 (294)
T 3g17_A 81 HLTYLAHEDTLIILAQNGY 99 (294)
T ss_dssp GHHHHEEEEEEEEECCSSC
T ss_pred HHHHhhCCCCEEEEeccCc
Confidence 3445567889999999883
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00034 Score=69.05 Aligned_cols=101 Identities=15% Similarity=0.225 Sum_probs=73.1
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEE-EEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNV-IFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~V-i~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
-..++|+++|+|.||+.+++. . ++++ .+|+ ... + ++++....++++++++.|+|+=|.. . .-+.+.
T Consensus 10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k~-g---elgv~a~~d~d~lla~pD~VVe~A~-~----~av~e~ 76 (253)
T 1j5p_A 10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RIS-K---DIPGVVRLDEFQVPSDVSTVVECAS-P----EAVKEY 76 (253)
T ss_dssp -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SSC-C---CCSSSEECSSCCCCTTCCEEEECSC-H----HHHHHH
T ss_pred cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-ccc-c---ccCceeeCCHHHHhhCCCEEEECCC-H----HHHHHH
Confidence 356899999999999999998 3 7775 5677 211 1 2266666789999999999987753 1 233344
Q ss_pred HHhcCCCCcEEEEcCCCCccCH---HHHHHHHHcCCce
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDD---DSLAAALKQGRIR 286 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde---~aL~~aL~~g~I~ 286 (501)
..+.|+.|.=+|-++-|.+.|. +.|.++.++|.-.
T Consensus 77 ~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~ 114 (253)
T 1j5p_A 77 SLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPAR 114 (253)
T ss_dssp HHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE
T ss_pred HHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe
Confidence 6777899999999999888887 4566666665533
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00058 Score=69.45 Aligned_cols=94 Identities=19% Similarity=0.309 Sum_probs=63.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchh------hh---hc----CceecCCHHHHHhcCCEEEEec--
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGI------EK---SL----GLTRVYTLQDLLFQSDCVSLHC-- 238 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~------~~---~~----gv~~~~sLdelL~~sDvVil~l-- 238 (501)
.++|+|||.|.+|..+|..|...|+ +|..||+...... .. .. .+....++++.+++||+|++++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~ 88 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL 88 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence 3689999999999999999998887 9999998753211 00 01 1222357888899999999998
Q ss_pred cCchhh------hhc--------cc--HHHHhcCCCCcEEEEcCCC
Q psy7383 239 TLNEHN------HHL--------IN--EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 239 Plt~~T------~~l--------I~--~~~l~~MK~gAilINvaRG 268 (501)
|..+.- +-- +. .+.+....+++++|+++--
T Consensus 89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP 134 (331)
T 1pzg_A 89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP 134 (331)
T ss_dssp SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCc
Confidence 644321 111 10 1223334589999988553
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00035 Score=70.50 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=68.2
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEE-EEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNV-IFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~V-i~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
.+|+|||+|+||+.+++.+... ++++ .++|++...... .++....++++++.++|+|++++|..... +...
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~--~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~~ 76 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK--TPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQA 76 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS--SCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHH
T ss_pred CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhc--CCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHHH
Confidence 3799999999999999999876 6775 578877443221 45555567888888999999999854221 2334
Q ss_pred hcCCCCcEEEEcCCCCc-c-CH-HHHHHHHHcCC
Q psy7383 254 KQMRPGAFLVNTARGGL-V-DD-DSLAAALKQGR 284 (501)
Q Consensus 254 ~~MK~gAilINvaRG~v-V-de-~aL~~aL~~g~ 284 (501)
..++.|.-+|...-..+ + +. +.|.++.+++.
T Consensus 77 ~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~ 110 (320)
T 1f06_A 77 PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG 110 (320)
T ss_dssp HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence 55666766665544332 2 22 45677766655
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00039 Score=72.67 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=66.1
Q ss_pred eEEeeccchHHHHHHHHHHhCC--------CEEEEECCCCCc--h-h----hh-------------hcCceecCCHHHHH
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFG--------FNVIFYDPYLPD--G-I----EK-------------SLGLTRVYTLQDLL 228 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG--------~~Vi~~dr~~~~--~-~----~~-------------~~gv~~~~sLdelL 228 (501)
||+|||.|..|.++|..|...| .+|..|.|.... + . .. ..++....++++.+
T Consensus 36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al 115 (391)
T 4fgw_A 36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV 115 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence 8999999999999999997644 469999875421 0 0 00 11234456899999
Q ss_pred hcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 229 FQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 229 ~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
+++|+|++++|. ...+.++ ++....++++..+|+++-|=
T Consensus 116 ~~ad~ii~avPs-~~~r~~l-~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 116 KDVDIIVFNIPH-QFLPRIC-SQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp TTCSEEEECSCG-GGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred hcCCEEEEECCh-hhhHHHH-HHhccccCCCceeEEecccc
Confidence 999999999993 2334433 34556778999999999884
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0052 Score=62.03 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=75.7
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC---CchhhhhcCceecCCHHHHHhcCCEEEEeccC---c---h
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL---PDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL---N---E 242 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~~~~gv~~~~sLdelL~~sDvVil~lPl---t---~ 242 (501)
+.|.+|++||= +++.++++..+..||++|.+..|.. +........+....+++|.++++|+|..-.=. . .
T Consensus 152 l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~ 231 (301)
T 2ef0_A 152 LAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAER 231 (301)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC--------
T ss_pred cCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccch
Confidence 78999999997 8999999999999999999998763 22222222356667999999999999884321 0 0
Q ss_pred h------hhhcccHHHHhcCCCCcEEEEcC---CCCccCHH
Q psy7383 243 H------NHHLINEFTIKQMRPGAFLVNTA---RGGLVDDD 274 (501)
Q Consensus 243 ~------T~~lI~~~~l~~MK~gAilINva---RG~vVde~ 274 (501)
. ...-++++.++++|++++|.-+. ||.=|+.+
T Consensus 232 ~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e 272 (301)
T 2ef0_A 232 EKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEE 272 (301)
T ss_dssp CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred hHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHH
Confidence 1 12457899999999999999987 55444433
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00068 Score=68.46 Aligned_cols=76 Identities=22% Similarity=0.266 Sum_probs=64.0
Q ss_pred cccCCeEEeeccchH-HHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 172 RIRGDTLGIVGLGRI-GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 172 ~L~gktVGIVGlG~I-G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
+++||++.|||-+.| |+.+|.+|...++.|+.+..+. .+|.+.++++|+|+.++. -.++|..
T Consensus 176 ~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T-------------~dl~~~~~~ADIvV~A~G----~p~~i~~ 238 (303)
T 4b4u_A 176 EIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT-------------QNLPELVKQADIIVGAVG----KAELIQK 238 (303)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHHHHTCSEEEECSC----STTCBCG
T ss_pred CCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC-------------CCHHHHhhcCCeEEeccC----CCCcccc
Confidence 599999999998876 9999999999999999886431 368899999999999875 2467776
Q ss_pred HHHhcCCCCcEEEEcCC
Q psy7383 251 FTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 251 ~~l~~MK~gAilINvaR 267 (501)
+ ..|+|+++||++-
T Consensus 239 d---~vk~GavVIDVGi 252 (303)
T 4b4u_A 239 D---WIKQGAVVVDAGF 252 (303)
T ss_dssp G---GSCTTCEEEECCC
T ss_pred c---cccCCCEEEEece
Confidence 4 4799999999985
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00098 Score=66.62 Aligned_cols=107 Identities=11% Similarity=0.039 Sum_probs=70.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchhhhhcCce--ecCCHHHHHhcCCEEEEeccCc--hhhh-
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGIEKSLGLT--RVYTLQDLLFQSDCVSLHCTLN--EHNH- 245 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~~~~~gv~--~~~sLdelL~~sDvVil~lPlt--~~T~- 245 (501)
++.++++.|||.|.+|++++..|...|+ +|.+++|+..+.......+. ...++++ + ++|+||.++|.. +...
T Consensus 119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~ 196 (282)
T 3fbt_A 119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGE 196 (282)
T ss_dssp CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTC
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCcc
Confidence 3789999999999999999999999998 99999988643222212222 1223334 4 899999999963 2211
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
-.++.+. ++++.+++|+.-.. ..+ .|+++.++..+
T Consensus 197 ~pi~~~~---l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~ 231 (282)
T 3fbt_A 197 SPVDKEV---VAKFSSAVDLIYNP-VET-LFLKYARESGV 231 (282)
T ss_dssp CSSCHHH---HTTCSEEEESCCSS-SSC-HHHHHHHHTTC
T ss_pred CCCCHHH---cCCCCEEEEEeeCC-CCC-HHHHHHHHCcC
Confidence 1245444 46788888887543 233 34444444433
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00068 Score=69.04 Aligned_cols=66 Identities=23% Similarity=0.270 Sum_probs=52.0
Q ss_pred CeEEeeccchHHHHHHHHHH-h-CCCEEE-EECCCCCc--hhhhhcC--ceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAK-A-FGFNVI-FYDPYLPD--GIEKSLG--LTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~-a-fG~~Vi-~~dr~~~~--~~~~~~g--v~~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+|.||+..++.++ . -+++|+ ++|+.... ...+..+ ...+.++++++. +.|+|++++|..
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 98 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNE 98 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcH
Confidence 58999999999999999998 4 378866 68987654 2334456 566679999998 489999999854
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00044 Score=69.73 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=66.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhhhhc--------Cce-ecCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIEKSL--------GLT-RVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~~~~--------gv~-~~~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||.|.||..+|..|...|. +|.+||+.... ...... ... ...+ .+.+++||+|+++++...
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence 479999999999999999998888 99999987421 111100 111 1124 356799999999998532
Q ss_pred h---hh--------hcccHHH---HhcCCCCcEEEEcCCCCccCHHHHHHHH--HcCCceEE
Q psy7383 243 H---NH--------HLINEFT---IKQMRPGAFLVNTARGGLVDDDSLAAAL--KQGRIRAA 288 (501)
Q Consensus 243 ~---T~--------~lI~~~~---l~~MK~gAilINvaRG~vVde~aL~~aL--~~g~I~GA 288 (501)
. ++ .++ .+. +....+++++|+++-+.=+....+.+.. ...++.|.
T Consensus 80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~ 140 (319)
T 1a5z_A 80 KPGETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS 140 (319)
T ss_dssp CSSCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred CCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence 1 01 111 222 2222578899998665322222222322 34466554
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00026 Score=70.09 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=70.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCc---------eecCCHHHHHhcCCEEEEeccC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGL---------TRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv---------~~~~sLdelL~~sDvVil~lPl 240 (501)
++.++++.|+|.|.||+++|+.|...| +|+++||+... ...+..+. ..+.++.+.+.++|+||.+++.
T Consensus 125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~ 203 (287)
T 1nvt_A 125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI 203 (287)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCC
Confidence 378999999999999999999999999 99999987532 11111110 0112335567889999999986
Q ss_pred chhh--h-hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 241 NEHN--H-HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 241 t~~T--~-~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
.... . ..+. ..+.++++.+++|+.-.. ..+ .|.+..++..+
T Consensus 204 ~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p-~~t-~ll~~a~~~G~ 247 (287)
T 1nvt_A 204 GMYPNIDVEPIV--KAEKLREDMVVMDLIYNP-LET-VLLKEAKKVNA 247 (287)
T ss_dssp TCTTCCSSCCSS--CSTTCCSSSEEEECCCSS-SSC-HHHHHHHTTTC
T ss_pred CCCCCCCCCCCC--CHHHcCCCCEEEEeeeCC-ccC-HHHHHHHHCCC
Confidence 4321 0 0120 135678899999998643 233 35555554443
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00058 Score=68.56 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=67.4
Q ss_pred CeEEeeccchHHHHHHHHHHh--CCCEEEEECCCCCc--hhhh--hc-------C--ceecCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKA--FGFNVIFYDPYLPD--GIEK--SL-------G--LTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~a--fG~~Vi~~dr~~~~--~~~~--~~-------g--v~~~~sLdelL~~sDvVil~lPl 240 (501)
++|+|||.|.+|..+|..|.. +|.+|..||+.... .... .. . +....++++ +++||+|++++|.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 479999999999999999987 58999999987542 1110 11 1 222246666 8999999999974
Q ss_pred chhhhhc-------cc----H---HHHhcCCCCcEEEEcCCCCccCHH--HHHHH--HHcCCceEE
Q psy7383 241 NEHNHHL-------IN----E---FTIKQMRPGAFLVNTARGGLVDDD--SLAAA--LKQGRIRAA 288 (501)
Q Consensus 241 t~~T~~l-------I~----~---~~l~~MK~gAilINvaRG~vVde~--aL~~a--L~~g~I~GA 288 (501)
. ...+. .| + +.+....+++++|+++- .+|.- .+.+. +...++.|.
T Consensus 80 p-~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN--P~~~~~~~~~~~~~~~~~rviG~ 142 (310)
T 1guz_A 80 P-RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDIMTHVAWVRSGLPKERVIGM 142 (310)
T ss_dssp C-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHHHHHHHHHHHCSCGGGEEEE
T ss_pred C-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC--chHHHHHHHHHhcCCChHHEEEC
Confidence 2 21111 11 1 12222357889999844 35443 22222 334566665
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00054 Score=69.09 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=51.5
Q ss_pred CeEEeeccchHHHHHHHHHH-h-CCCEEE-EECCCCCc--hhhhhcC--ceecCCHHHHHhc--CCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAK-A-FGFNVI-FYDPYLPD--GIEKSLG--LTRVYTLQDLLFQ--SDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~-a-fG~~Vi-~~dr~~~~--~~~~~~g--v~~~~sLdelL~~--sDvVil~lPlt 241 (501)
.+|||||+|.||+..++.++ . -+++|. ++|+.... ...+..+ ...+.++++++++ .|+|++++|..
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 77 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGP 77 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCch
Confidence 37999999999999999998 5 477866 67887543 2334556 5566799999986 89999999854
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00068 Score=67.69 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=71.3
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCCCEEE-EECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhcccH
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFGFNVI-FYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG~~Vi-~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI~~ 250 (501)
..+|+|+|+ |++|+.+++.++..|++++ .+|+.... ....|+..+.+++|+.. ..|++++++|.. ....++ .
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g--~~~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~-~ 82 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGG--TTHLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSI-L 82 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTT--CEETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHH-H
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccc--ceeCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHH-H
Confidence 468999999 9999999999988899854 56765321 12457766678999998 899999999943 233333 2
Q ss_pred HHHhcCCCCcEEEEcCCCC-ccCHHHHHHHHHcCCce
Q psy7383 251 FTIKQMRPGAFLVNTARGG-LVDDDSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~-vVde~aL~~aL~~g~I~ 286 (501)
+.++. ... .+|..+-|- .-+.+.|.++.++..+.
T Consensus 83 ea~~~-Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv~ 117 (288)
T 2nu8_A 83 EAIDA-GIK-LIITITEGIPTLDMLTVKVKLDEAGVR 117 (288)
T ss_dssp HHHHT-TCS-EEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 33332 223 334455552 23455888888887664
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00062 Score=68.96 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=50.1
Q ss_pred CeEEeeccchHHHH-HHHHHHhC-CCEEE-EECCCCCchhhhhcCceecCCHHHHHhc--CCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSA-VALRAKAF-GFNVI-FYDPYLPDGIEKSLGLTRVYTLQDLLFQ--SDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~~L~af-G~~Vi-~~dr~~~~~~~~~~gv~~~~sLdelL~~--sDvVil~lPlt~ 242 (501)
.+|||||+|.||+. .++.++.. +++|. ++|+..........+...+.++++++.+ .|+|++++|...
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 79 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDT 79 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTT
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHH
Confidence 47999999999997 78888776 77865 6787654322222355566799999986 899999998543
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00081 Score=68.17 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=51.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCC---ch--hhhh----cCc--e--ecCCH---HHHHhcCCEE
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLP---DG--IEKS----LGL--T--RVYTL---QDLLFQSDCV 234 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~---~~--~~~~----~gv--~--~~~sL---delL~~sDvV 234 (501)
+++|+++.|+|.|.+|++++..|...|. +|.+++|+.. +. ..+. .+. . ...++ .+.+.++|+|
T Consensus 145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI 224 (312)
T 3t4e_A 145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL 224 (312)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence 4789999999999999999999999998 8999999832 11 1111 121 1 12243 5568899999
Q ss_pred EEeccCc
Q psy7383 235 SLHCTLN 241 (501)
Q Consensus 235 il~lPlt 241 (501)
|.++|..
T Consensus 225 INaTp~G 231 (312)
T 3t4e_A 225 TNGTKVG 231 (312)
T ss_dssp EECSSTT
T ss_pred EECCcCC
Confidence 9999864
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=65.61 Aligned_cols=105 Identities=12% Similarity=0.140 Sum_probs=67.0
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhh----hh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHN----HH 246 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T----~~ 246 (501)
.++++.|||.|.+|+.++..|...|+ +|.+++|+..+ .+.+..+.....+++ +.++|+||.++|..... ..
T Consensus 118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~ 195 (271)
T 1npy_A 118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD 195 (271)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence 46889999999999999999999998 79999998543 233333432221222 46899999999965321 11
Q ss_pred -cccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 247 -LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 247 -lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
.+..+. ++++.+++|+.-.. ..+ .|++..++..+
T Consensus 196 ~~~~~~~---l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~ 230 (271)
T 1npy_A 196 LAFPKAF---IDNASVAFDVVAMP-VET-PFIRYAQARGK 230 (271)
T ss_dssp CSSCHHH---HHHCSEEEECCCSS-SSC-HHHHHHHHTTC
T ss_pred CCCCHHH---cCCCCEEEEeecCC-CCC-HHHHHHHHCCC
Confidence 133333 34567777777633 233 45554444443
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=66.41 Aligned_cols=106 Identities=9% Similarity=0.152 Sum_probs=66.8
Q ss_pred CeEEeeccchHHH-HHHHHHHhCCCEE-EEECCCCCc--hhhhhc-CceecCCHHHHHh--cCCEEEEeccCchhhhhcc
Q psy7383 176 DTLGIVGLGRIGS-AVALRAKAFGFNV-IFYDPYLPD--GIEKSL-GLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 176 ktVGIVGlG~IG~-~iA~~L~afG~~V-i~~dr~~~~--~~~~~~-gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI 248 (501)
.+|||||+|.+|. .+++.++..+++| .++|+.... ...+.+ +...+.+++++++ +.|+|++++|.....
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~---- 80 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRA---- 80 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHH----
T ss_pred cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHH----
Confidence 4799999999996 6788787778995 578887643 233444 4555678999997 689999999844221
Q ss_pred cHHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHcCCce
Q psy7383 249 NEFTIKQMRPGA-FLVNT-ARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 249 ~~~~l~~MK~gA-ilINv-aRG~vVde~aL~~aL~~g~I~ 286 (501)
+-.++.|+.|. +|+.- ---.+-+.+.|+++.++..+.
T Consensus 81 -~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~ 119 (336)
T 2p2s_A 81 -ELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRK 119 (336)
T ss_dssp -HHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCC
T ss_pred -HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 12223344454 45542 112223445566666554443
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00089 Score=63.02 Aligned_cols=90 Identities=16% Similarity=0.063 Sum_probs=58.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~ 245 (501)
++|.|+|+|.+|+.+|+.|...|.+|+++|+..... .....++..+ .+ ++++ +.++|+|+++++....
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~-- 78 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEV-- 78 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHH--
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHH--
Confidence 469999999999999999999999999999875321 1222343321 12 3333 6789999999885543
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
+++-....+.+.+...+|-..+
T Consensus 79 n~~~~~~a~~~~~~~~iia~~~ 100 (218)
T 3l4b_C 79 NLFIAQLVMKDFGVKRVVSLVN 100 (218)
T ss_dssp HHHHHHHHHHTSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCCeEEEEEe
Confidence 3333444555444555554433
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00033 Score=70.22 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=67.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhhhhc--------Ccee-cCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIEKSL--------GLTR-VYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~~~~--------gv~~-~~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|||.|.||..+|..|...|. +|..||+.... ...... .... ..+ .+.+++||+|+++++...
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~ 79 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ 79 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence 479999999999999999999998 99999986421 111110 1111 123 356899999999995322
Q ss_pred h-----------hhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEE
Q psy7383 243 H-----------NHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAA 288 (501)
Q Consensus 243 ~-----------T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GA 288 (501)
. +..++. .+.+....+++++|+++-+.=+....+.+.....++.|.
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~ 138 (304)
T 2v6b_A 80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS 138 (304)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence 1 111111 123333468999999766533333444455455566554
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00056 Score=68.48 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=62.7
Q ss_pred CeEEeeccchHHHHHHHHHHh-CCCEEE-EECCCCCchhhhhcCce--ecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKA-FGFNVI-FYDPYLPDGIEKSLGLT--RVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~a-fG~~Vi-~~dr~~~~~~~~~~gv~--~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
.+|||||+|+||+.+++.++. -+++|. ++|+...... ..|+. .+.++.++ .++|+|++++|..... +.
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~--~~g~~~~~~~~l~~~-~~~DvViiatp~~~h~-----~~ 81 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVP--FELQPFRVVSDIEQL-ESVDVALVCSPSREVE-----RT 81 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------CCTTSCEESSGGGS-SSCCEEEECSCHHHHH-----HH
T ss_pred CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHH--HcCCCcCCHHHHHhC-CCCCEEEECCCchhhH-----HH
Confidence 489999999999999999987 478877 6887754321 14443 23345454 6899999999843221 22
Q ss_pred HHhcCCCCcEEEEcCC--C-CccCHHHHHHHHHcCCc
Q psy7383 252 TIKQMRPGAFLVNTAR--G-GLVDDDSLAAALKQGRI 285 (501)
Q Consensus 252 ~l~~MK~gAilINvaR--G-~vVde~aL~~aL~~g~I 285 (501)
..+.++.|.-+|+..- + .+.+.+.|.++.++..+
T Consensus 82 ~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~ 118 (304)
T 3bio_A 82 ALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGA 118 (304)
T ss_dssp HHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCC
Confidence 3345566777776532 1 22344567777766554
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.001 Score=70.52 Aligned_cols=153 Identities=19% Similarity=0.080 Sum_probs=97.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC---EEEEEC----CC--CCc--h---hhh---h----cCce-ecCCHHHHHh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF---NVIFYD----PY--LPD--G---IEK---S----LGLT-RVYTLQDLLF 229 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~---~Vi~~d----r~--~~~--~---~~~---~----~gv~-~~~sLdelL~ 229 (501)
.+++++|.|+|.|..|+.+++.|...|. +|+++| |+ ... . ... . .... ...++.+.+.
T Consensus 183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~ 262 (439)
T 2dvm_A 183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALK 262 (439)
T ss_dssp CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHT
T ss_pred CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhc
Confidence 4789999999999999999999999998 799999 76 222 1 110 0 0110 1346889999
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCC
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAP 309 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~p 309 (501)
++|+||.+.|.. .+++.++.++.|+++.++++++.. ..|.-+.++.+.|... ..|=... -..+.-
T Consensus 263 ~aDVlInaT~~~---~G~~~~e~v~~m~~~~iVfDLynP--~~t~~~~~A~~~G~~i--vatG~~m--------l~~Q~n 327 (439)
T 2dvm_A 263 DADVLISFTRPG---PGVIKPQWIEKMNEDAIVFPLANP--VPEILPEEAKKAGARI--VATGRSD--------YPNQIN 327 (439)
T ss_dssp TCSEEEECSCCC---SSSSCHHHHTTSCTTCEEEECCSS--SCSSCHHHHHHHTCSE--ECBSCSS--------SSSBCC
T ss_pred cCCEEEEcCCCc---cCCCChHHHHhcCCCCEEEECCCC--CCcchHHHHHHcCCeE--EcCCCch--------hHHHHH
Confidence 999999998742 266777788899999999999554 3455555555555421 1132211 123445
Q ss_pred CeEEecCCC------CCcHHHHHHHHHHHHHHHHHHH
Q psy7383 310 NILCTPHAA------FYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 310 NVilTPHiA------g~T~ea~~~~~~~~~~ni~~~l 340 (501)
|+++-|-++ ..+ .-.++|...+++.|.++.
T Consensus 328 n~~~FPGi~~g~l~~~a~-~i~~~m~~aaa~ala~~~ 363 (439)
T 2dvm_A 328 NLLGFPGIFRGALDVRAR-TITDSMIIAAAKAIASIV 363 (439)
T ss_dssp GGGTHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHTS
T ss_pred HHhcccCchHHHHhcCCC-CCCHHHHHHHHHHHHhhC
Confidence 666666442 111 112456666666665554
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0013 Score=66.87 Aligned_cols=106 Identities=15% Similarity=0.175 Sum_probs=69.6
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEE-EEECCCCCc--hhhhhcC----ceecCCHHHHHh--cCCEEEEeccCchhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNV-IFYDPYLPD--GIEKSLG----LTRVYTLQDLLF--QSDCVSLHCTLNEHNH 245 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~V-i~~dr~~~~--~~~~~~g----v~~~~sLdelL~--~sDvVil~lPlt~~T~ 245 (501)
.+|||||+|.||+.+++.++.. ++++ .++|++... ...+..+ ...+.++++++. +.|+|++++|.....
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~- 85 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV- 85 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH-
T ss_pred eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHH-
Confidence 4799999999999999999875 5675 468876532 2333445 344568999997 599999999843221
Q ss_pred hcccHHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHcCCce
Q psy7383 246 HLINEFTIKQMRPGA-FLVNT-ARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 246 ~lI~~~~l~~MK~gA-ilINv-aRG~vVde~aL~~aL~~g~I~ 286 (501)
+-..+.++.|. +|+.- ---.+-+.+.|.++.++..+.
T Consensus 86 ----~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~ 124 (362)
T 1ydw_A 86 ----EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ 124 (362)
T ss_dssp ----HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred ----HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence 22234456665 44432 112233556788888887765
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0095 Score=60.28 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=71.7
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC---Cchhh---h----hcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL---PDGIE---K----SLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~---~----~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
|.|.+|++||=| ++.++++..+..||++|.+..|.. +.... + ..| +....+++|.++++|+|..-.
T Consensus 146 l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~ 225 (307)
T 2i6u_A 146 LRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDT 225 (307)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred cCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecc
Confidence 789999999986 999999999999999999998763 21121 1 334 455679999999999998843
Q ss_pred cC-------chh-----hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 239 TL-------NEH-----NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 239 Pl-------t~~-----T~~lI~~~~l~~MK~gAilINvaR 267 (501)
=. .++ ...-++++.++.+|++++|.-+.-
T Consensus 226 w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP 266 (307)
T 2i6u_A 226 WTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLP 266 (307)
T ss_dssp SSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECSC
T ss_pred eecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCCC
Confidence 20 000 124568899999999999988863
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00066 Score=70.96 Aligned_cols=152 Identities=18% Similarity=0.113 Sum_probs=99.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC----C--chh-------hhhcC-ceecCCHHHHHhcCCEEEE
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL----P--DGI-------EKSLG-LTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~----~--~~~-------~~~~g-v~~~~sLdelL~~sDvVil 236 (501)
.+...+|.|+|.|..|..+|+.+..+|. +|+++|++- . ... ..... .....+|+|+++++|+++-
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG 264 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIG 264 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEE
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEe
Confidence 4888999999999999999999999999 999999862 1 001 00000 0112469999999999876
Q ss_pred eccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC-ceEEEEecCCCCCCCCCCCCCCCCCCeEEec
Q psy7383 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR-IRAAALDVHESEPYNVFQGNLKDAPNILCTP 315 (501)
Q Consensus 237 ~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~-I~GAaLDVfe~EPl~~~~~pL~~~pNVilTP 315 (501)
.- +-++|.++.++.|+++++++.+|+... |-.-.++.+.|+ |.+-+ .. +.| -+.-|+++-|
T Consensus 265 ~S-----apgl~T~EmVk~Ma~~pIIfalsNPt~--E~~pe~a~~~g~~i~atG------rs----~~p-~Q~NN~~~FP 326 (398)
T 2a9f_A 265 VS-----APGVLKAEWISKMAARPVIFAMANPIP--EIYPDEALEAGAYIVGTG------RS----DFP-NQINNVLAFP 326 (398)
T ss_dssp CC-----STTCCCHHHHHTSCSSCEEEECCSSSC--SSCHHHHHTTTCSEEEES------CT----TSS-SBCCGGGTHH
T ss_pred cC-----CCCCCCHHHHHhhCCCCEEEECCCCCc--cCCHHHHHHhCCeEEEeC------CC----CCC-CcCCceeEcc
Confidence 52 369999999999999999999999753 222223333455 33222 11 111 2456777777
Q ss_pred CCCCCcH-----HHHHHHHHHHHHHHHHHHh
Q psy7383 316 HAAFYSE-----ASCTELREMAASEIRRAIV 341 (501)
Q Consensus 316 HiAg~T~-----ea~~~~~~~~~~ni~~~l~ 341 (501)
=++--.- .-.++|.-.+++.|..+..
T Consensus 327 gi~~Gal~~~a~~I~d~m~~aAa~alA~~~~ 357 (398)
T 2a9f_A 327 GIFRGALDARAKTITVEMQIAAAKGIASLVP 357 (398)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHcCCcCCCHHHHHHHHHHHHhcCC
Confidence 6542111 1124566666666666543
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0017 Score=65.83 Aligned_cols=92 Identities=20% Similarity=0.303 Sum_probs=60.8
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchh------hh-------hcCceecCCHHHHHhcCCEEEEec--
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGI------EK-------SLGLTRVYTLQDLLFQSDCVSLHC-- 238 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~------~~-------~~gv~~~~sLdelL~~sDvVil~l-- 238 (501)
.++|+|||.|.+|..+|..|...|+ +|..||+...... .. ...+....++ +.+++||+|++++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~ 92 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGV 92 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCC
Confidence 3689999999999999999999898 9999998754211 00 0113333466 7789999999998
Q ss_pred cCchh---------hhhccc--HHHHhcCCCCcEEEEcCC
Q psy7383 239 TLNEH---------NHHLIN--EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 239 Plt~~---------T~~lI~--~~~l~~MK~gAilINvaR 267 (501)
|..+. +..++. .+.+....+++++|+++-
T Consensus 93 p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 93 PRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp CCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 43221 111110 122233348899998855
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0009 Score=67.17 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=50.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCC---CEE-EEECCCCCc--hhhhhcCc-eecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG---FNV-IFYDPYLPD--GIEKSLGL-TRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG---~~V-i~~dr~~~~--~~~~~~gv-~~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+|.||+..++.++... ++| .++|++... ...+..++ ..+.++++++. +.|+|++++|..
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 77 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHP 77 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGG
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcH
Confidence 37999999999999999998764 454 467876532 23345566 35679999998 699999999854
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.01 Score=59.91 Aligned_cols=92 Identities=24% Similarity=0.259 Sum_probs=68.1
Q ss_pred ccCCeEEeeccc---hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCch-------
Q psy7383 173 IRGDTLGIVGLG---RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNE------- 242 (501)
Q Consensus 173 L~gktVGIVGlG---~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~------- 242 (501)
+.|+||++||=+ ++.++++..+..||++|.+..|..-.......| ...+++|+++++|||..-.--.+
T Consensus 145 l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g--~~~d~~eav~~aDvvyt~~~q~er~~~~~~ 222 (304)
T 3r7f_A 145 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFG--TYVSMDEAVESSDVVMLLRIQNERHQSAVS 222 (304)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSC--EECCHHHHHHHCSEEEECCCCTTTCCSSCC
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcC--ccCCHHHHhCCCCEEEeccchhhccccchh
Confidence 789999999975 699999999999999999998752111111223 24589999999999987421111
Q ss_pred --h--hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 243 --H--NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 243 --~--T~~lI~~~~l~~MK~gAilINva 266 (501)
+ ...-++.+.++++|++++|.-+.
T Consensus 223 ~~~~~~~y~v~~~~l~~a~~~ai~mHcl 250 (304)
T 3r7f_A 223 QEGYLNKYGLTVERAERMKRHAIIMHPA 250 (304)
T ss_dssp STTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred HHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence 1 12447899999999999998886
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0013 Score=64.30 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=56.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEE-ECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIF-YDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~-~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
.+|+|+|+|+||+.+++.+...+.++.+ +|+.... ..++....++++++ ++|+|+-.... ..+. +.+.
T Consensus 4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----~~gv~v~~dl~~l~-~~DVvIDft~p-~a~~-----~~~~ 72 (243)
T 3qy9_A 4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----TTPYQQYQHIADVK-GADVAIDFSNP-NLLF-----PLLD 72 (243)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------CCSCBCSCTTTCT-TCSEEEECSCH-HHHH-----HHHT
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----cCCCceeCCHHHHh-CCCEEEEeCCh-HHHH-----HHHH
Confidence 5799999999999999999887667554 7876542 35666667888988 99998744321 2222 2333
Q ss_pred cCCCCcEEEEcCCC
Q psy7383 255 QMRPGAFLVNTARG 268 (501)
Q Consensus 255 ~MK~gAilINvaRG 268 (501)
++.|.-+|....|
T Consensus 73 -l~~g~~vVigTTG 85 (243)
T 3qy9_A 73 -EDFHLPLVVATTG 85 (243)
T ss_dssp -SCCCCCEEECCCS
T ss_pred -HhcCCceEeCCCC
Confidence 7777777766666
|
| >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0075 Score=60.82 Aligned_cols=95 Identities=15% Similarity=0.173 Sum_probs=71.9
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhC-CCEEEEECCCC---CchhhhhcCc--eecCCHHHHHhcCCEEEEeccCch-
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAF-GFNVIFYDPYL---PDGIEKSLGL--TRVYTLQDLLFQSDCVSLHCTLNE- 242 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~af-G~~Vi~~dr~~---~~~~~~~~gv--~~~~sLdelL~~sDvVil~lPlt~- 242 (501)
+.|++|++||= +++.++++..+..| |++|.+..|.. +....+..|. ....+++|+++++|||..-.=-.+
T Consensus 147 l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er 226 (299)
T 1pg5_A 147 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER 226 (299)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCccccc
Confidence 78999999998 59999999999999 99999998753 2222233443 345689999999999987654321
Q ss_pred -----hh-----hhcccHHHHhcCCCCcEEEEcCC
Q psy7383 243 -----HN-----HHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 243 -----~T-----~~lI~~~~l~~MK~gAilINvaR 267 (501)
+- ..-++.+.++.+|++++|.-+.-
T Consensus 227 ~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP 261 (299)
T 1pg5_A 227 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLP 261 (299)
T ss_dssp SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSC
T ss_pred ccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCCC
Confidence 11 24568899999999999888764
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00056 Score=66.70 Aligned_cols=91 Identities=22% Similarity=0.228 Sum_probs=63.2
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC-------------------Cchh-h-h---hc--Cc--ee-
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL-------------------PDGI-E-K---SL--GL--TR- 220 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~-------------------~~~~-~-~---~~--gv--~~- 220 (501)
..|++++|.|||+|.+|..+|+.|...|. +|.++|+.. .+.. . + .. .+ ..
T Consensus 27 ~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 106 (249)
T 1jw9_B 27 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 106 (249)
T ss_dssp HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 45899999999999999999999999997 899999764 1110 0 0 00 11 11
Q ss_pred ---cC--CHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 221 ---VY--TLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 221 ---~~--sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
.. ++++++.++|+|+.++. +.+++.++++...+. +..+|+.
T Consensus 107 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~ 152 (249)
T 1jw9_B 107 NALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG 152 (249)
T ss_dssp CSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred eccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence 11 24567889999998875 567888887665553 3445554
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0014 Score=66.81 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=49.3
Q ss_pred CeEEeeccchHHHH-HHHHHHhC-CCEEE-EECCCCCc--hhhhhc-CceecCCHHHHHhcC--CEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSA-VALRAKAF-GFNVI-FYDPYLPD--GIEKSL-GLTRVYTLQDLLFQS--DCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~-gv~~~~sLdelL~~s--DvVil~lPl 240 (501)
.+|||||+|.||+. +++.++.. +++|. ++|+.... ...+.. +...+.++++++++. |+|++++|.
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 78 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPP 78 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCc
Confidence 57999999999995 88998876 77876 78887543 223333 345567999999855 999999983
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0023 Score=71.91 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=89.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc---h---hhhh----------c-------CceecCCHHHHHhcCC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD---G---IEKS----------L-------GLTRVYTLQDLLFQSD 232 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~---~---~~~~----------~-------gv~~~~sLdelL~~sD 232 (501)
++|||||.|.||..||..+...|++|+.+|..... . ..+. . -+....++ +.+++||
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aD 395 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVD 395 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCG-GGGGSCS
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcH-HHHhhCC
Confidence 68999999999999999999999999999986421 0 0000 0 01122233 3478999
Q ss_pred EEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeE
Q psy7383 233 CVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNIL 312 (501)
Q Consensus 233 vVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVi 312 (501)
+||=+++.+-+.+.-+-++.-+.++++++|-.-..+ +.-..|.+.++. .=..+++=.|. |.+ .-||.+ ||
T Consensus 396 lVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~~-p~r~ig~HFfn--P~~--~m~LVE---vi 465 (742)
T 3zwc_A 396 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDR-PQLVIGTHFFS--PAH--VMRLLE---VI 465 (742)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEECCS--STT--TCCEEE---EE
T ss_pred EEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcCC-ccccccccccC--CCC--CCceEE---Ee
Confidence 999999999888887778888889999999765554 566666666543 33334555443 322 234543 66
Q ss_pred EecCCC
Q psy7383 313 CTPHAA 318 (501)
Q Consensus 313 lTPHiA 318 (501)
-+++.+
T Consensus 466 ~g~~Ts 471 (742)
T 3zwc_A 466 PSRYSS 471 (742)
T ss_dssp ECSSCC
T ss_pred cCCCCC
Confidence 666654
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0019 Score=65.31 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=49.5
Q ss_pred CeEEeeccchHHH-HHHHHHHhC-CCEEE-EECCCCCchhhhh---cCceecCCHHHHHhc--CCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGS-AVALRAKAF-GFNVI-FYDPYLPDGIEKS---LGLTRVYTLQDLLFQ--SDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~-~iA~~L~af-G~~Vi-~~dr~~~~~~~~~---~gv~~~~sLdelL~~--sDvVil~lPlt 241 (501)
.+|||||+|.||+ ..++.++.. +++|. ++|+.......+. .++..+.++++++.+ .|+|++++|..
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 76 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAH 76 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGG
T ss_pred eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcH
Confidence 3799999999998 577777665 77865 6787733333333 466667799999986 89999999854
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.015 Score=59.22 Aligned_cols=95 Identities=13% Similarity=0.216 Sum_probs=71.6
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC---Cchhh-------hhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL---PDGIE-------KSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~-------~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
|.|++|++||=| ++.++++..+..||++|.+..|.. +.... +..| +....+++|+++++|||..-.
T Consensus 165 l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~ 244 (325)
T 1vlv_A 165 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 244 (325)
T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred cCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEecc
Confidence 789999999985 999999999999999999998753 22121 1345 445679999999999998843
Q ss_pred cC-------chh-----hhhcccHHHHhcC-CCCcEEEEcCC
Q psy7383 239 TL-------NEH-----NHHLINEFTIKQM-RPGAFLVNTAR 267 (501)
Q Consensus 239 Pl-------t~~-----T~~lI~~~~l~~M-K~gAilINvaR 267 (501)
=. .++ ...-++++.++++ |++++|.-+.-
T Consensus 245 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP 286 (325)
T 1vlv_A 245 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLP 286 (325)
T ss_dssp CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred ccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCC
Confidence 21 011 1245789999999 99999988863
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0016 Score=66.76 Aligned_cols=65 Identities=29% Similarity=0.486 Sum_probs=47.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce---ecCC---HHHHHhcCCEEEEe
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT---RVYT---LQDLLFQSDCVSLH 237 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~---~~~s---LdelL~~sDvVil~ 237 (501)
+.||||+|||.|.+|+.+++.++.+|++|+++|+............. ...+ +.++++++|+|+..
T Consensus 12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~ 82 (389)
T 3q2o_A 12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE 82 (389)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence 68999999999999999999999999999999976532111110101 1112 56788899998653
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=65.99 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=47.6
Q ss_pred CeEEeeccchHHHH-HHH-HHH-hCCCEEE-EECCCCCch--hhhhcCceecCCHHHHHhc--CCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSA-VAL-RAK-AFGFNVI-FYDPYLPDG--IEKSLGLTRVYTLQDLLFQ--SDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~-~L~-afG~~Vi-~~dr~~~~~--~~~~~gv~~~~sLdelL~~--sDvVil~lPlt 241 (501)
.+|||||+|.||+. .++ .++ .-+++|. ++|+..... ..+..++..+.++++++.+ .|+|++++|..
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 76 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 76 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGG
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChH
Confidence 37999999999996 455 333 3478876 788876432 2222356666799999986 89999999854
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.018 Score=58.37 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=68.4
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC---Cchh-hhhc--CceecCCHHHHHhcCCEEEEec----cC-
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL---PDGI-EKSL--GLTRVYTLQDLLFQSDCVSLHC----TL- 240 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~-~~~~--gv~~~~sLdelL~~sDvVil~l----Pl- 240 (501)
+.|+||++||= +++.++++..+..||++|.+..|.. +... .+.. ++....+++|.++++|||..-+ ..
T Consensus 152 l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e 231 (309)
T 4f2g_A 152 IRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFE 231 (309)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC------
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcch
Confidence 78999999985 5788888888999999999998752 2222 1122 3445679999999999998743 00
Q ss_pred --ch-----hhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 241 --NE-----HNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 241 --t~-----~T~~lI~~~~l~~MK~gAilINva 266 (501)
.. -...-++.+.++.+|++++|.-+.
T Consensus 232 ~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l 264 (309)
T 4f2g_A 232 AENEARKRAFADWCVDEEMMSHANSDALFMHCL 264 (309)
T ss_dssp ------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred hhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence 00 012457899999999999998886
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0017 Score=65.84 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=46.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchh------hh-------hcCceecCCHHHHHhcCCEEEEec
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGI------EK-------SLGLTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~------~~-------~~gv~~~~sLdelL~~sDvVil~l 238 (501)
++|+|||.|.+|..+|..|...|+ +|..||....... .. ...+....++ +.+++||+|++++
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~ 80 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA 80 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence 589999999999999999998888 9999998754210 11 0112222466 7799999999998
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.023 Score=57.67 Aligned_cols=96 Identities=14% Similarity=0.215 Sum_probs=72.6
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC---Cchhh---h----hcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL---PDGIE---K----SLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~---~----~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
.+.|.+|++||= +++.++++..+..+|++|.+..|.. +.... + ..| +....+++|.++++|||..-.
T Consensus 152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~ 231 (315)
T 1pvv_A 152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 231 (315)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence 378999999997 8999999999999999999998763 21121 1 344 445678999999999998843
Q ss_pred cC-------chh-----hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 239 TL-------NEH-----NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 239 Pl-------t~~-----T~~lI~~~~l~~MK~gAilINvaR 267 (501)
=. .++ ....++.+.++.+|++++|.-+.-
T Consensus 232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP 272 (315)
T 1pvv_A 232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLP 272 (315)
T ss_dssp CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSC
T ss_pred eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCC
Confidence 21 111 124579999999999999988863
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0022 Score=68.03 Aligned_cols=100 Identities=21% Similarity=0.262 Sum_probs=73.0
Q ss_pred cccCCeEEeeccc----------hHHHHHHHHHHhCCCEEEEECCCCCchhhhhc-CceecCCHHHHHhcCCEEEEeccC
Q psy7383 172 RIRGDTLGIVGLG----------RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSL-GLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 172 ~L~gktVGIVGlG----------~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~-gv~~~~sLdelL~~sDvVil~lPl 240 (501)
.++|++|+|+|+- .-...+++.|...|++|.+|||...+...+.+ ++..+.++++.++++|+|++++..
T Consensus 319 ~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~ 398 (446)
T 4a7p_A 319 DVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEW 398 (446)
T ss_dssp CCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCC
T ss_pred cCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCC
Confidence 4789999999997 66789999999999999999998754333333 566667889999999999998764
Q ss_pred chhhhhcccHHHH-hcCCCCcEEEEcCCCCccCHHHH
Q psy7383 241 NEHNHHLINEFTI-KQMRPGAFLVNTARGGLVDDDSL 276 (501)
Q Consensus 241 t~~T~~lI~~~~l-~~MK~gAilINvaRG~vVde~aL 276 (501)
. +-+. ++-+.+ +.|+ ..++||+ |+ +.|.+.+
T Consensus 399 ~-~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~ 430 (446)
T 4a7p_A 399 D-AFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL 430 (446)
T ss_dssp T-TTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred H-Hhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence 3 2222 454444 4566 4678885 65 4565544
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00081 Score=70.54 Aligned_cols=106 Identities=14% Similarity=0.196 Sum_probs=66.1
Q ss_pred CeEEeeccchHHH-HHHHHHHhC-CCEE-EEECCCCCc--hhhhhcCce-----ecCCHHHHHh--cCCEEEEeccCchh
Q psy7383 176 DTLGIVGLGRIGS-AVALRAKAF-GFNV-IFYDPYLPD--GIEKSLGLT-----RVYTLQDLLF--QSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGlG~IG~-~iA~~L~af-G~~V-i~~dr~~~~--~~~~~~gv~-----~~~sLdelL~--~sDvVil~lPlt~~ 243 (501)
.+|||||+|.||+ .+++.++.. +++| .++|+.... ...+..++. .+.++++++. +.|+|++++|....
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h 163 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH 163 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH
Confidence 4799999999997 899988775 5775 578876532 233345553 3568999997 79999999984422
Q ss_pred hhhcccHHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHcCCce
Q psy7383 244 NHHLINEFTIKQMRPGA-FLVNT-ARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gA-ilINv-aRG~vVde~aL~~aL~~g~I~ 286 (501)
.. -....++.|. +|+.- ---.+-+.+.|+++.++..+.
T Consensus 164 ~~-----~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~ 203 (433)
T 1h6d_A 164 AE-----FAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK 203 (433)
T ss_dssp HH-----HHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCC
T ss_pred HH-----HHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCe
Confidence 21 2223344454 45442 111233445667766665443
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.019 Score=58.92 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=96.5
Q ss_pred HHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhh
Q psy7383 84 KEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQL 163 (501)
Q Consensus 84 ~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~ 163 (501)
..+|.+. .-+|+...-.-..+. +.++..+|+|.|.-+....+. .+|+=++.+.+++ |
T Consensus 119 arvLs~y--~D~IviR~~~~~~~~-~lA~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~---------G--------- 175 (340)
T 4ep1_A 119 AKVLSHY--IDGIMIRTFSHADVE-ELAKESSIPVINGLTDDHHPC--QALADLMTIYEET---------N--------- 175 (340)
T ss_dssp HHHHHHH--CSEEEEECSCHHHHH-HHHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------S---------
T ss_pred HHHHHHh--CCEEEEecCChhHHH-HHHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh---------C---------
Confidence 5566666 345555554433332 445566899999754332221 1222233332221 1
Q ss_pred hhhccccccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC---Cchhh-------hhcC--ceecCCHHHHHhc
Q psy7383 164 REAASGCARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL---PDGIE-------KSLG--LTRVYTLQDLLFQ 230 (501)
Q Consensus 164 ~~~~~g~~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~-------~~~g--v~~~~sLdelL~~ 230 (501)
.+.|+||++||= +++.++++..+..||++|.+..|.. +.... +..| +....+++|++++
T Consensus 176 --------~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~ 247 (340)
T 4ep1_A 176 --------TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNE 247 (340)
T ss_dssp --------CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTT
T ss_pred --------CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCC
Confidence 378999999986 5788888888999999999998753 11111 1334 4556799999999
Q ss_pred CCEEEEeccCch------h-----hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 231 SDCVSLHCTLNE------H-----NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 231 sDvVil~lPlt~------~-----T~~lI~~~~l~~MK~gAilINva 266 (501)
+|||..-.=-.. + ...-++.+.++.+|++++|.-+.
T Consensus 248 aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL 294 (340)
T 4ep1_A 248 ADFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL 294 (340)
T ss_dssp CSEEEECCC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred CCEEEecCccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence 999987542110 0 12357999999999999999887
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00095 Score=69.99 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=63.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~ 245 (501)
+.+|.|+|+|++|+.+|+.|...|.+|++.|..... ...+..|+..+ .+ |+++ +.++|+|+++++....
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~-- 81 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT-- 81 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHH--
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHH--
Confidence 457999999999999999999999999999987542 22233454322 12 2333 6789999999986544
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
++.-...++.+.+...+|--++
T Consensus 82 n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 82 NLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp HHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHHHHhCCCCeEEEEEC
Confidence 3333566777778866665444
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0016 Score=66.25 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=50.4
Q ss_pred CeEEeeccchHHHH-HHHHHHhC-CCEEE-EECCCCCchhhhhc-CceecCCHHHHHhc--CCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSA-VALRAKAF-GFNVI-FYDPYLPDGIEKSL-GLTRVYTLQDLLFQ--SDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~~L~af-G~~Vi-~~dr~~~~~~~~~~-gv~~~~sLdelL~~--sDvVil~lPlt 241 (501)
.+|||||+|.||+. .++.++.. +++|. ++|+.... ..+.. +...+.++++++.+ .|+|++++|..
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 76 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL-SKERYPQASIVRSFKELTEDPEIDLIVVNTPDN 76 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG-GGTTCTTSEEESCSHHHHTCTTCCEEEECSCGG
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHHhCCCCceECCHHHHhcCCCCCEEEEeCChH
Confidence 47999999999997 77877776 78875 67887654 33334 56666799999987 89999999853
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0017 Score=64.90 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=71.5
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCCCEEE-EECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhcccH
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFGFNVI-FYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG~~Vi-~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI~~ 250 (501)
.++|+|+|+ |++|+.+++.++..|++++ ..+|... . ....|+..+.+++|+.. ..|++++++|.. .+..++.
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~-g-~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~-~~~~~~~- 82 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKG-G-MEVLGVPVYDTVKEAVAHHEVDASIIFVPAP-AAADAAL- 82 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-T-CEETTEEEESSHHHHHHHSCCSEEEECCCHH-HHHHHHH-
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCC-C-ceECCEEeeCCHHHHhhcCCCCEEEEecCHH-HHHHHHH-
Confidence 468999999 9999999999998899854 5666542 1 12356776678999998 899999999843 3333432
Q ss_pred HHHhcCCCCcEEEEcCCCC-ccCHHHHHHHHHcCCce
Q psy7383 251 FTIKQMRPGAFLVNTARGG-LVDDDSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG~-vVde~aL~~aL~~g~I~ 286 (501)
+.++. .-. .+|.++.|- ..+++.|.+++++..+.
T Consensus 83 ea~~~-Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi~ 117 (288)
T 1oi7_A 83 EAAHA-GIP-LIVLITEGIPTLDMVRAVEEIKALGSR 117 (288)
T ss_dssp HHHHT-TCS-EEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 33332 222 244455552 23456888888877664
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00096 Score=71.10 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=66.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhC-CCEEEEECCCCCch--hhhhcCcee--c-----CCHHHHHhcCCEEEEeccCc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAF-GFNVIFYDPYLPDG--IEKSLGLTR--V-----YTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~af-G~~Vi~~dr~~~~~--~~~~~gv~~--~-----~sLdelL~~sDvVil~lPlt 241 (501)
.+.+++|.|+|.|.||+.+++.|... |.+|.+++|+.... .....++.. + .++.+++.++|+||.++|..
T Consensus 20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~ 99 (467)
T 2axq_A 20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYT 99 (467)
T ss_dssp ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGG
T ss_pred CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchh
Confidence 57889999999999999999999987 78999999875431 111123321 1 14556788999999999854
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
-.. . +.. ..++.+..+++++--. -+...|.++.++..+
T Consensus 100 ~~~-~-v~~---a~l~~g~~vvd~~~~~-p~~~~Ll~~Ak~aGv 137 (467)
T 2axq_A 100 FHP-N-VVK---SAIRTKTDVVTSSYIS-PALRELEPEIVKAGI 137 (467)
T ss_dssp GHH-H-HHH---HHHHHTCEEEECSCCC-HHHHHHHHHHHHHTC
T ss_pred hhH-H-HHH---HHHhcCCEEEEeecCC-HHHHHHHHHHHHcCC
Confidence 221 1 112 2234566777764311 123455555554433
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.014 Score=59.75 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=72.7
Q ss_pred ccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC---Cchhh-------hhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL---PDGIE-------KSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~-------~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
|.|.+|++||=| ++.++++..+..||++|.+..|.. +.... +..| +....+++|.++++|||..-+
T Consensus 153 l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~ 232 (333)
T 1duv_G 153 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDV 232 (333)
T ss_dssp GGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCC
Confidence 789999999986 999999999999999999998753 22121 1345 445679999999999998843
Q ss_pred cC--c------hh-----hhhcccHHHHhcC-CCCcEEEEcCCC
Q psy7383 239 TL--N------EH-----NHHLINEFTIKQM-RPGAFLVNTARG 268 (501)
Q Consensus 239 Pl--t------~~-----T~~lI~~~~l~~M-K~gAilINvaRG 268 (501)
=. . .+ ...-++.+.++++ |++++|.-+.--
T Consensus 233 w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~ 276 (333)
T 1duv_G 233 WVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPA 276 (333)
T ss_dssp SSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSCC
T ss_pred ccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCCC
Confidence 31 0 11 1245799999999 999999988653
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.012 Score=60.15 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=73.2
Q ss_pred cccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC---Cchhh-------hhcC--ceecCCHHHHHhcCCEEEEe
Q psy7383 172 RIRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL---PDGIE-------KSLG--LTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 172 ~L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~-------~~~g--v~~~~sLdelL~~sDvVil~ 237 (501)
.|.|++|++||=| ++.++++..+..||++|.+..|.. +.... +..| +....+++|.++++|||..-
T Consensus 152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd 231 (335)
T 1dxh_A 152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD 231 (335)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence 3789999999986 999999999999999999998753 22121 1344 44567999999999999874
Q ss_pred ccC--------chh-----hhhcccHHHHhcC-CCCcEEEEcCCC
Q psy7383 238 CTL--------NEH-----NHHLINEFTIKQM-RPGAFLVNTARG 268 (501)
Q Consensus 238 lPl--------t~~-----T~~lI~~~~l~~M-K~gAilINvaRG 268 (501)
+=. ..+ ...-++.+.++++ |++++|.-+.--
T Consensus 232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~ 276 (335)
T 1dxh_A 232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPA 276 (335)
T ss_dssp CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSCC
T ss_pred CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCCC
Confidence 331 011 1245799999999 999999988653
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0042 Score=62.60 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=74.1
Q ss_pred ccCCeEEee-cc-chHHHHHHHHHHhCCCEEE-EECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhc
Q psy7383 173 IRGDTLGIV-GL-GRIGSAVALRAKAFGFNVI-FYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 173 L~gktVGIV-Gl-G~IG~~iA~~L~afG~~Vi-~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~l 247 (501)
+..++++|| |+ |++|+.+++.++..|++++ ..|+.... .+..|+..+.+++|+.. ..|++++++|.. ....+
T Consensus 11 ~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g--~~i~G~~vy~sl~el~~~~~vD~avI~vP~~-~~~~~ 87 (305)
T 2fp4_A 11 VDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGG--KTHLGLPVFNTVKEAKEQTGATASVIYVPPP-FAAAA 87 (305)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTT--CEETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHH
T ss_pred hCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCc--ceECCeeeechHHHhhhcCCCCEEEEecCHH-HHHHH
Confidence 567889999 99 9999999999999999944 55665311 12356766668999998 899999999943 33334
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHcC-Cce
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGL-VDDDSLAAALKQG-RIR 286 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~v-Vde~aL~~aL~~g-~I~ 286 (501)
+. +.++. .- ..+|+++-|-- -++..|.+.+++. .+.
T Consensus 88 ~~-e~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~ 125 (305)
T 2fp4_A 88 IN-EAIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTR 125 (305)
T ss_dssp HH-HHHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred HH-HHHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence 33 33332 22 24466777632 2445889999887 654
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0019 Score=65.03 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=58.9
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc-hhh----hh--cCceecCCHHHHHhcCCEEEEeccCc----
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD-GIE----KS--LGLTRVYTLQDLLFQSDCVSLHCTLN---- 241 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~-~~~----~~--~gv~~~~sLdelL~~sDvVil~lPlt---- 241 (501)
.++|+|||.|.||..+|..+...|. +|..+|..... +.. .. ..+....++ +.+++||+|+++....
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~ 92 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ 92 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence 3789999999999999999987777 99999986521 111 10 123333466 6689999999987321
Q ss_pred ------hhhhhccc--HHHHhcCCCCcEEEEcCCC
Q psy7383 242 ------EHNHHLIN--EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 ------~~T~~lI~--~~~l~~MK~gAilINvaRG 268 (501)
.++..++- .+.+....++++||+++--
T Consensus 93 tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP 127 (303)
T 2i6t_A 93 SYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP 127 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCCh
Confidence 11112211 1222333489999998773
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0032 Score=64.23 Aligned_cols=67 Identities=22% Similarity=0.162 Sum_probs=46.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhh------cCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKS------LGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~------~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
+.++|+|+|.|.+|+.+|+.|.. ..+|.++|+..... ..+. ..+....+++++++++|+|+.++|..
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 44679999999999999999975 47899998764321 1111 11111234677899999999999854
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0011 Score=66.80 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=60.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCchh------hhhc-----CceecCCHHHHHhcCCEEEEeccCc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPDGI------EKSL-----GLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~~~------~~~~-----gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
-++|+|||.|.||..+|..++..|. +|..+|+...... .... ..+...+..+.+++||+|+++.+..
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~ 85 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN 85 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence 3689999999999999999977664 8999998742111 0100 1111123456799999999997643
Q ss_pred hh-----------hhhccc--HHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 242 EH-----------NHHLIN--EFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 242 ~~-----------T~~lI~--~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
.. +..++. .+.+....+++++|+++. .+|.-
T Consensus 86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN--Pv~~~ 129 (316)
T 1ldn_A 86 QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN--PVDIL 129 (316)
T ss_dssp CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHHH
T ss_pred CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC--chHHH
Confidence 21 111110 122333458899999855 35443
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0012 Score=62.73 Aligned_cols=87 Identities=8% Similarity=0.066 Sum_probs=58.7
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~ 245 (501)
.++|.|+|+|.+|+.+|+.|...|+ |+++|+..... ... .++..+ .+ |+++ +.++|.|+++++... .
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~--~ 84 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS--E 84 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH--H
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH--H
Confidence 4679999999999999999999999 99999875431 112 343321 12 2333 678999999987543 3
Q ss_pred hcccHHHHhcCCCCcEEEEc
Q psy7383 246 HLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINv 265 (501)
+++-....+.+.++..+|--
T Consensus 85 n~~~~~~a~~~~~~~~iia~ 104 (234)
T 2aef_A 85 TIHCILGIRKIDESVRIIAE 104 (234)
T ss_dssp HHHHHHHHHHHCSSSEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEE
Confidence 44445666777777444443
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0014 Score=67.26 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=51.8
Q ss_pred CeEEeeccc-hHHHHHHHHHHhC-CCEEE-EECCCCCc--hhhhhcCceecCCHHHHHhc--CCEEEEeccCc
Q psy7383 176 DTLGIVGLG-RIGSAVALRAKAF-GFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLLFQ--SDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG-~IG~~iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL~~--sDvVil~lPlt 241 (501)
.+|||||+| .||+..++.++.. +++|. ++|+.... ...+..++..+.+++|++++ .|+|++++|..
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~ 75 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQ 75 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGG
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcH
Confidence 479999999 9999999999876 66765 67876532 23445677777899999985 99999999854
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0015 Score=66.51 Aligned_cols=90 Identities=20% Similarity=0.171 Sum_probs=65.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhh-hcCceec---CC---HHHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEK-SLGLTRV---YT---LQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~-~~gv~~~---~s---LdelL~~sDvVil~lPlt~~T~ 245 (501)
.|++|.|+|.|.||..+++.++.+|++|++.+++... +..+ .+|...+ .+ +.++....|+|+.++....
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~--- 263 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVH--- 263 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCC---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHH---
Confidence 6899999999999999999999999999999976543 2323 5665432 12 2233346799988876432
Q ss_pred hcccHHHHhcCCCCcEEEEcCCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG 268 (501)
.-...++.|+++..+|+++..
T Consensus 264 --~~~~~~~~l~~~G~iv~~g~~ 284 (366)
T 1yqd_A 264 --PLLPLFGLLKSHGKLILVGAP 284 (366)
T ss_dssp --CSHHHHHHEEEEEEEEECCCC
T ss_pred --HHHHHHHHHhcCCEEEEEccC
Confidence 124677888999999998754
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0021 Score=62.15 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=62.6
Q ss_pred cccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh---hhcCceecC-C-HHHHHhcCCEEEEeccCchhh
Q psy7383 170 CARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE---KSLGLTRVY-T-LQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 170 ~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~---~~~gv~~~~-s-LdelL~~sDvVil~lPlt~~T 244 (501)
..+|.|++|.|||.|.+|...++.|...|++|+++++...++.. ...++.... . .++.+.++|+|+.+.. .++
T Consensus 26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~-d~~- 103 (223)
T 3dfz_A 26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN-DQA- 103 (223)
T ss_dssp EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC-CTH-
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC-CHH-
Confidence 35799999999999999999999999999999999987654322 122232211 1 1345788999887643 333
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaR 267 (501)
+|.......+ --++||+..
T Consensus 104 ---~N~~I~~~ak-~gi~VNvvD 122 (223)
T 3dfz_A 104 ---VNKFVKQHIK-NDQLVNMAS 122 (223)
T ss_dssp ---HHHHHHHHSC-TTCEEEC--
T ss_pred ---HHHHHHHHHh-CCCEEEEeC
Confidence 3444445556 567888743
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0032 Score=62.51 Aligned_cols=94 Identities=15% Similarity=0.256 Sum_probs=59.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCchh---hh-hcC------ce--ecCCHHHHHhcCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPDGI---EK-SLG------LT--RVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~~~---~~-~~g------v~--~~~sLdelL~~sDvVil~lP 239 (501)
.-++|+|||.|.||..+|..|...|. +|..+|+...... .. ..+ .. ...+ .+.++++|+|++++.
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~ 84 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAG 84 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCC
Confidence 34789999999999999999999998 9999998742111 10 111 11 1113 356789999999995
Q ss_pred Cc--h-hhh--------hccc--HHHHhcCCCCcEEEEcCCC
Q psy7383 240 LN--E-HNH--------HLIN--EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt--~-~T~--------~lI~--~~~l~~MK~gAilINvaRG 268 (501)
.. + +++ .++. .+.+....+++++|++.-|
T Consensus 85 ~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np 126 (319)
T 1lld_A 85 PRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 126 (319)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCc
Confidence 32 1 111 1110 1222223688999998776
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0047 Score=65.36 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=68.2
Q ss_pred cccCCeEEeeccc----------hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcC--ceecCCHHHHHhcCCEEEEecc
Q psy7383 172 RIRGDTLGIVGLG----------RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLG--LTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 172 ~L~gktVGIVGlG----------~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~g--v~~~~sLdelL~~sDvVil~lP 239 (501)
.+.|+||+|+|+- .=...+++.|...|++|.+|||...+......+ +..+.++++.++++|+|++++.
T Consensus 315 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~ 394 (450)
T 3gg2_A 315 NVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTE 394 (450)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSC
T ss_pred cCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccC
Confidence 4789999999984 346899999999999999999987543323333 5666788999999999999876
Q ss_pred CchhhhhcccHH-HHhcCCCCcEEEEcCCC
Q psy7383 240 LNEHNHHLINEF-TIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt~~T~~lI~~~-~l~~MK~gAilINvaRG 268 (501)
.. +-+. ++-+ ..+.|+ ..++||+ |+
T Consensus 395 ~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~ 420 (450)
T 3gg2_A 395 WK-EFRM-PDWSALSQAMA-ASLVIDG-RN 420 (450)
T ss_dssp CG-GGSS-CCHHHHHHHSS-SCEEEES-SC
T ss_pred CH-HHhh-cCHHHHHHhcC-CCEEEEC-CC
Confidence 43 3333 3444 444566 6688886 65
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0038 Score=58.06 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=59.4
Q ss_pred CeEEeec-cchHHHHHHHHHH-hCCCEEEEECCCCC-chhh---hhcCcee-------cCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVG-LGRIGSAVALRAK-AFGFNVIFYDPYLP-DGIE---KSLGLTR-------VYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~-afG~~Vi~~dr~~~-~~~~---~~~gv~~-------~~sLdelL~~sDvVil~lPlt~ 242 (501)
|+|.|.| .|.||+.+++.|. ..|++|++++|+.. .... ...++.. ..+++++++++|+|+.+.....
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n 85 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG 85 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence 5699999 6999999999999 89999999998743 2111 1112211 1245667899999998876431
Q ss_pred hhhhcccHHHHhcCCC-C-cEEEEcCCCCc
Q psy7383 243 HNHHLINEFTIKQMRP-G-AFLVNTARGGL 270 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~-g-AilINvaRG~v 270 (501)
.. ....++.|+. + ..||+++....
T Consensus 86 -~~---~~~~~~~~~~~~~~~iv~iSs~~~ 111 (221)
T 3r6d_A 86 -SD---MASIVKALSRXNIRRVIGVSMAGL 111 (221)
T ss_dssp -HH---HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred -hh---HHHHHHHHHhcCCCeEEEEeecee
Confidence 11 3444455542 2 36888876543
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0016 Score=66.32 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=49.5
Q ss_pred CeEEeeccchHHHH-HHHHHHhC-CCEEE-EECCCCCchhhhhc-CceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSA-VALRAKAF-GFNVI-FYDPYLPDGIEKSL-GLTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~~L~af-G~~Vi-~~dr~~~~~~~~~~-gv~~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+|.||+. .++.++.. +++|. ++|+.... ..+.. ++..+.++++++. +.|+|++++|..
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 76 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE-VKRDFPDAEVVHELEEITNDPAIELVIVTTPSG 76 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH-HHHHCTTSEEESSTHHHHTCTTCCEEEECSCTT
T ss_pred ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHhhCCCCceECCHHHHhcCCCCCEEEEcCCcH
Confidence 47999999999997 68878766 78865 67776533 23333 5666679999998 789999999854
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.015 Score=59.96 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=100.8
Q ss_pred CHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchh
Q psy7383 83 TKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQ 162 (501)
Q Consensus 83 ~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~ 162 (501)
+..+|.++. -+|+...-.-..+. +.++-.+|+|.|.-+....++ .+|+=++.+.+++ |
T Consensus 115 TarvLs~~~--D~IviR~~~~~~~~-~lA~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~~---------g-------- 172 (359)
T 2w37_A 115 TAKVLGSMF--DGIEFRGFKQSDAE-ILARDSGVPVWNGLTDEWHPT--QMLADFMTVKENF---------G-------- 172 (359)
T ss_dssp HHHHHHHHC--SEEEEESSCHHHHH-HHHHHSSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------S--------
T ss_pred HHHHHHHhc--CEEEEecCChHHHH-HHHHhCCCCEEcCCCCCCCcc--HHHHHHHHHHHHh---------C--------
Confidence 345566653 45666654443332 344556799999765332222 2233233332221 1
Q ss_pred hhhhccccccccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC---Cchhh-------hhcC--ceecCCHHHHH
Q psy7383 163 LREAASGCARIRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL---PDGIE-------KSLG--LTRVYTLQDLL 228 (501)
Q Consensus 163 ~~~~~~g~~~L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~-------~~~g--v~~~~sLdelL 228 (501)
.|.|.+|++||=| ++..+++..+..||++|.+..|.. ..... +..| +....+++|++
T Consensus 173 ---------~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav 243 (359)
T 2w37_A 173 ---------KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGL 243 (359)
T ss_dssp ---------CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred ---------CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHh
Confidence 3789999999986 999999999999999999998753 22121 1334 45567999999
Q ss_pred hcCCEEEEeccC--c----hh-----hhhcccHHHHhcCC---CCcEEEEcCCC
Q psy7383 229 FQSDCVSLHCTL--N----EH-----NHHLINEFTIKQMR---PGAFLVNTARG 268 (501)
Q Consensus 229 ~~sDvVil~lPl--t----~~-----T~~lI~~~~l~~MK---~gAilINvaRG 268 (501)
+++|||..-+=. . .+ ...-++.+.++++| ++++|.-+.--
T Consensus 244 ~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP~ 297 (359)
T 2w37_A 244 KGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLPA 297 (359)
T ss_dssp TTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSCC
T ss_pred cCCCEEEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCCC
Confidence 999999874320 0 11 12457899999999 99999988654
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0019 Score=65.65 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=66.0
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC---Cc-hhhhhcCceecC--CH-HHHH---hcCCEEEEeccCc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL---PD-GIEKSLGLTRVY--TL-QDLL---FQSDCVSLHCTLN 241 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~---~~-~~~~~~gv~~~~--sL-delL---~~sDvVil~lPlt 241 (501)
++.|++|.|+|.|.||..+++.++.+|++|++.+++. .. +..+++|...++ ++ +++. ...|+|+.++...
T Consensus 178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 257 (366)
T 2cdc_A 178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD 257 (366)
T ss_dssp SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence 4669999999999999999999999999999999875 32 344456655431 11 2222 3579998887643
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
... + ...++.|+++..+|+++-
T Consensus 258 ~~~---~-~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 258 VNI---L-GNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp THH---H-HHHGGGEEEEEEEEECSC
T ss_pred HHH---H-HHHHHHHhcCCEEEEEec
Confidence 211 1 456788899999999875
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0028 Score=67.00 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=49.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcC-cee----cC---CHHHHHhcCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLG-LTR----VY---TLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~g-v~~----~~---sLdelL~~sDvVil~lPlt 241 (501)
.+++|+|+|.|.||+.+++.|...|++|.++||+.... .....+ +.. +. ++++++.++|+|+.++|..
T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 36899999999999999999999999999999875321 111111 111 11 3457788999999999854
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.024 Score=57.62 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=68.7
Q ss_pred ccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCC---Cchhhh-------hcC--ceecCCHHHHHhcCCEEEEecc
Q psy7383 173 IRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYL---PDGIEK-------SLG--LTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 173 L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~~-------~~g--v~~~~sLdelL~~sDvVil~lP 239 (501)
+.|.+|++||=| ++.++++..+..||++|.+..|.. +..... ..| +....+++|+++++|||..-+-
T Consensus 153 l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w 232 (321)
T 1oth_A 153 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW 232 (321)
T ss_dssp CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred cCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEecc
Confidence 889999999985 477888888889999999998763 222211 123 4556799999999999998431
Q ss_pred C--c--hh--------hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 240 L--N--EH--------NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 240 l--t--~~--------T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. . .+ ...-++.+.++.+|++++|.-+.-
T Consensus 233 ~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP 272 (321)
T 1oth_A 233 ISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP 272 (321)
T ss_dssp SCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSC
T ss_pred ccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCC
Confidence 1 1 11 113468899999999999888754
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0025 Score=67.72 Aligned_cols=113 Identities=16% Similarity=0.137 Sum_probs=73.1
Q ss_pred cCCeEEeeccchH--HHHHHHHHHh----CCCEEEEECCCCCc-h-hhh--------hcCceecCCHHHHHhcCCEEEEe
Q psy7383 174 RGDTLGIVGLGRI--GSAVALRAKA----FGFNVIFYDPYLPD-G-IEK--------SLGLTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 174 ~gktVGIVGlG~I--G~~iA~~L~a----fG~~Vi~~dr~~~~-~-~~~--------~~gv~~~~sLdelL~~sDvVil~ 237 (501)
+.++|+|||.|.+ |..++..+.. .| +|..||..... + ... ...+....++++++++||+|+++
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a 82 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS 82 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence 3468999999997 6888888764 46 99999986421 1 010 01234456899999999999999
Q ss_pred ccCc-----------hhhhhccc------------------------HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 238 CTLN-----------EHNHHLIN------------------------EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 238 lPlt-----------~~T~~lI~------------------------~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
++.. +.-.++.. .+.+....|++++||++..-=+-..++.+.+..
T Consensus 83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~~p~ 162 (450)
T 3fef_A 83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPG 162 (450)
T ss_dssp CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHCTT
T ss_pred cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHCCC
Confidence 9632 22223311 134444568999999988644444455554444
Q ss_pred CCceE
Q psy7383 283 GRIRA 287 (501)
Q Consensus 283 g~I~G 287 (501)
.++.|
T Consensus 163 ~rviG 167 (450)
T 3fef_A 163 IKAIG 167 (450)
T ss_dssp CEEEE
T ss_pred CCEEE
Confidence 55554
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0032 Score=67.05 Aligned_cols=66 Identities=20% Similarity=0.368 Sum_probs=51.0
Q ss_pred CeEEeecc----chHHHHHHHHHHhC--CCEEE-EECCCCCc--hhhhhcCce---ecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGL----GRIGSAVALRAKAF--GFNVI-FYDPYLPD--GIEKSLGLT---RVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGl----G~IG~~iA~~L~af--G~~Vi-~~dr~~~~--~~~~~~gv~---~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+ |.||+..++.++.. +++|. ++|+.... ...+..++. .+.+++++++ +.|+|++++|..
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~~ 119 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP 119 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCcH
Confidence 58999999 99999999999886 77864 78876532 233445653 5679999996 689999999843
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.02 Score=59.18 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=96.9
Q ss_pred HHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhh
Q psy7383 84 KEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQL 163 (501)
Q Consensus 84 ~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~ 163 (501)
..+|.+. .-.|+...-.-..+ .+.++--+|+|.|.-+....++ .+|+=++.+.+++ |
T Consensus 120 arvLs~~--~D~IviR~~~~~~~-~~lA~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~~---------G--------- 176 (365)
T 4amu_A 120 AKVLGRF--YDGIEFRGFAQSDV-DALVKYSGVPVWNGLTDDEHPT--QIIADFMTMKEKF---------G--------- 176 (365)
T ss_dssp HHHHHHH--CSEEEEECSCHHHH-HHHHHHHCSCEEEEECSSCCHH--HHHHHHHHHHHHH---------S---------
T ss_pred HHHHHhh--CcEEEEecCChhHH-HHHHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh---------C---------
Confidence 4455555 34555554443333 2445556899999855332221 1222223322221 1
Q ss_pred hhhccccccccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC-----Cchh-------hhhcC--ceecCCHHHH
Q psy7383 164 REAASGCARIRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL-----PDGI-------EKSLG--LTRVYTLQDL 227 (501)
Q Consensus 164 ~~~~~g~~~L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~-----~~~~-------~~~~g--v~~~~sLdel 227 (501)
.+.|++|++||=+ ++..+++..+..+|++|.+..|.. ..+. .+..| +....+++|+
T Consensus 177 --------~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea 248 (365)
T 4amu_A 177 --------NLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILA 248 (365)
T ss_dssp --------SCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHH
T ss_pred --------CCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHH
Confidence 3789999999987 789999999999999999998752 1111 12234 4455799999
Q ss_pred HhcCCEEEEec--cCch--h---------hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 228 LFQSDCVSLHC--TLNE--H---------NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 228 L~~sDvVil~l--Plt~--~---------T~~lI~~~~l~~MK~gAilINvaR 267 (501)
++++|||..-+ ..+. + ...-++.+.++.+|++++|.-+.-
T Consensus 249 v~~aDVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP 301 (365)
T 4amu_A 249 AQDADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLP 301 (365)
T ss_dssp TTTCSEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSC
T ss_pred hcCCCEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCC
Confidence 99999998732 1121 1 013478999999999999988864
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.05 Score=55.39 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=68.7
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC---Cchhh-------hhcC--ceecCCHHHHHhcCCEEEEecc
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL---PDGIE-------KSLG--LTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~-------~~~g--v~~~~sLdelL~~sDvVil~lP 239 (501)
+.|+||++||= +++.++++..+..+|++|.+..|.. +.... +..| ++...+++|.++++|||..-.=
T Consensus 155 l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 155 LAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVW 234 (323)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCC
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEece
Confidence 78999999985 6788888888999999999998753 21111 1223 4556799999999999977532
Q ss_pred Cch--h----------hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 240 LNE--H----------NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 240 lt~--~----------T~~lI~~~~l~~MK~gAilINva 266 (501)
-.. + ...-++.+.++.+|++++|.-+.
T Consensus 235 qs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl 273 (323)
T 3gd5_A 235 TSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL 273 (323)
T ss_dssp C---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred ecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence 110 0 12357899999999999998875
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0042 Score=65.88 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=73.5
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEEC--------CCC-Cch-h-----------------hhhcCceecCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYD--------PYL-PDG-I-----------------EKSLGLTRVYT 223 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~d--------r~~-~~~-~-----------------~~~~gv~~~~s 223 (501)
.+|.|+||.|=|+|++|+.+|+.|...|++|++.+ +.- +.+ + .+..+.+.+ +
T Consensus 231 ~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~-~ 309 (450)
T 4fcc_A 231 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYL-E 309 (450)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEE-E
T ss_pred CCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEe-c
Confidence 36899999999999999999999999999998754 221 100 0 011233332 2
Q ss_pred HHHHH-hcCCEEEEeccCchhhhhcccHHHHhcCCCC--cEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 224 LQDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQMRPG--AFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 224 LdelL-~~sDvVil~lPlt~~T~~lI~~~~l~~MK~g--AilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
-++++ .+|||++-|. +.+.|+.+....++.+ .++++-+-+.+ ..++ .+.|.+..|.
T Consensus 310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~-t~eA-~~iL~~rGIl 368 (450)
T 4fcc_A 310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPT-TIEA-TELFQQAGVL 368 (450)
T ss_dssp TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCC-CHHH-HHHHHHCCCE
Confidence 23333 4799987663 5788999988888764 57888888765 4443 3567777765
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0033 Score=63.34 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=68.1
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-CCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-YTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
.|++|.|+|.|.||...++.++.+|++|++.+++..+ +..+++|...+ .+.+++.+..|+|+-++.... .-..
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~-----~~~~ 250 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHY-----DLKD 250 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCC-----CHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHH-----HHHH
Confidence 5889999999999999999999999999999977643 55566776543 233334446899988765321 2256
Q ss_pred HHhcCCCCcEEEEcCCCC
Q psy7383 252 TIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~ 269 (501)
.++.++++..+|.++...
T Consensus 251 ~~~~l~~~G~iv~~G~~~ 268 (348)
T 3two_A 251 YLKLLTYNGDLALVGLPP 268 (348)
T ss_dssp HHTTEEEEEEEEECCCCC
T ss_pred HHHHHhcCCEEEEECCCC
Confidence 778899999999987543
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.058 Score=55.00 Aligned_cols=95 Identities=9% Similarity=0.107 Sum_probs=69.1
Q ss_pred cccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCCCc-----hh---h----hh--cC--ceecCCHHHHHhcCCE
Q psy7383 172 RIRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYLPD-----GI---E----KS--LG--LTRVYTLQDLLFQSDC 233 (501)
Q Consensus 172 ~L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~~~-----~~---~----~~--~g--v~~~~sLdelL~~sDv 233 (501)
.+.|++|++||=+ ++.++++..+..||++|.+..|..-. .. . +. .| ++...+++|.++++||
T Consensus 158 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDv 237 (328)
T 3grf_A 158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV 237 (328)
T ss_dssp TGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE
T ss_pred ccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCE
Confidence 4889999999976 88999999999999999999875311 11 1 11 34 4456799999999999
Q ss_pred EEEe----ccCchh---------hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 234 VSLH----CTLNEH---------NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 234 Vil~----lPlt~~---------T~~lI~~~~l~~MK~gAilINva 266 (501)
|..- +...++ ....++.+.++.+|++++|.-+.
T Consensus 238 vytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l 283 (328)
T 3grf_A 238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL 283 (328)
T ss_dssp EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred EEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence 9863 221111 12447999999999999998886
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0091 Score=54.78 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=59.4
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceec-CCH----HHHHhcCCEEEEeccCchhhhh---
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV-YTL----QDLLFQSDCVSLHCTLNEHNHH--- 246 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~-~sL----delL~~sDvVil~lPlt~~T~~--- 246 (501)
++|.|.| .|.||+.+++.|...|++|++++|+.........+++.+ .++ .+.+.++|+|+.+.........
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~ 80 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHV 80 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHH
Confidence 4789999 599999999999999999999998754321111233211 122 1678899999988765432211
Q ss_pred cccHHHHhcCCC--CcEEEEcCCCC
Q psy7383 247 LINEFTIKQMRP--GAFLVNTARGG 269 (501)
Q Consensus 247 lI~~~~l~~MK~--gAilINvaRG~ 269 (501)
......++.|+. ...+|+++...
T Consensus 81 ~~~~~l~~a~~~~~~~~~v~~SS~~ 105 (221)
T 3ew7_A 81 TSLDHLISVLNGTVSPRLLVVGGAA 105 (221)
T ss_dssp HHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred HHHHHHHHHHHhcCCceEEEEecce
Confidence 112344555544 35677776643
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0057 Score=62.63 Aligned_cols=64 Identities=25% Similarity=0.365 Sum_probs=46.6
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce---ec---CCHHHHHhcCCEEEE
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT---RV---YTLQDLLFQSDCVSL 236 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~---~~---~sLdelL~~sDvVil 236 (501)
+.+++|+|||.|.+|+.+++.++.+|++|+++|+............. .. ..+.++++++|+|+.
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~ 79 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY 79 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence 67899999999999999999999999999999986542111111000 11 125667888999866
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0037 Score=60.99 Aligned_cols=91 Identities=21% Similarity=0.310 Sum_probs=62.4
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhh----------------------hc--Cc--eec
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEK----------------------SL--GL--TRV 221 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~----------------------~~--gv--~~~ 221 (501)
..|++++|.|||+|.+|..+++.|...|. ++.++|...-+ .+.+ .. ++ +..
T Consensus 24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 103 (251)
T 1zud_1 24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL 103 (251)
T ss_dssp HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999999999999999999999997 78888754210 0000 00 11 111
Q ss_pred ------CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 222 ------YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 222 ------~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
.+++++++++|+|+.++. +.+++.++++...+. +.-+|..
T Consensus 104 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~ 149 (251)
T 1zud_1 104 QQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITA 149 (251)
T ss_dssp CSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEE
T ss_pred eccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEE
Confidence 134567889999998875 677888888766553 3345554
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.013 Score=59.26 Aligned_cols=96 Identities=19% Similarity=0.294 Sum_probs=68.6
Q ss_pred cccCCeEEeecc---chHHHHHHHHHHhCCCEEEEECCCC---Cchh---hhhcCc--eecCCHHHHHhcCCEEEEeccC
Q psy7383 172 RIRGDTLGIVGL---GRIGSAVALRAKAFGFNVIFYDPYL---PDGI---EKSLGL--TRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 172 ~L~gktVGIVGl---G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~---~~~~gv--~~~~sLdelL~~sDvVil~lPl 240 (501)
.+.|++|++||= +++.++++..+..||++|.+..|.. +... .+..|. ....+++|+++++|||..-.=-
T Consensus 152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q 231 (308)
T 1ml4_A 152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ 231 (308)
T ss_dssp CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence 378999999998 4899999999999999999998753 2112 112243 3456899999999999875421
Q ss_pred c------hhh-----hhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 N------EHN-----HHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t------~~T-----~~lI~~~~l~~MK~gAilINvaR 267 (501)
. ++- ..-++.+.++++|++++|.-+.-
T Consensus 232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP 269 (308)
T 1ml4_A 232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLP 269 (308)
T ss_dssp GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSC
T ss_pred ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCCC
Confidence 1 111 13457778888888888877653
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0071 Score=60.96 Aligned_cols=66 Identities=23% Similarity=0.229 Sum_probs=50.5
Q ss_pred CeEEeeccc-hHHHHHHHHHHhC--CCEE-EEECCCCCc--hhhhhcCc-eecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLG-RIGSAVALRAKAF--GFNV-IFYDPYLPD--GIEKSLGL-TRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG-~IG~~iA~~L~af--G~~V-i~~dr~~~~--~~~~~~gv-~~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+| .+|+..++.++.. +++| .++|+.... ...+..++ ..+.++++++. +.|+|++++|..
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 93 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE 93 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 479999999 8999999999876 5676 568876532 23344565 55679999997 589999999843
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0026 Score=60.15 Aligned_cols=95 Identities=14% Similarity=0.044 Sum_probs=58.9
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCC-CEEEEECCCCCchhh-hhcCce-------ecCCHHHHHhcCCEEEEeccCch
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFG-FNVIFYDPYLPDGIE-KSLGLT-------RVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG-~~Vi~~dr~~~~~~~-~~~gv~-------~~~sLdelL~~sDvVil~lPlt~ 242 (501)
..-|+|.|.| .|.||+.+++.|...| ++|++++|+...... ...++. ...+++++++++|+|+.+.....
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~ 100 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED 100 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence 3457899999 7999999999999999 899999987532111 111111 11235667889999988765432
Q ss_pred hhhhcccHHHHhcCCC--CcEEEEcCCCC
Q psy7383 243 HNHHLINEFTIKQMRP--GAFLVNTARGG 269 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~--gAilINvaRG~ 269 (501)
.. .....++..|+. ...||+++...
T Consensus 101 ~~--~~~~~~~~~~~~~~~~~iV~iSS~~ 127 (236)
T 3qvo_A 101 LD--IQANSVIAAMKACDVKRLIFVLSLG 127 (236)
T ss_dssp HH--HHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred hh--HHHHHHHHHHHHcCCCEEEEEecce
Confidence 11 111233444432 23677777654
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0022 Score=67.19 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=51.0
Q ss_pred CeEEeecc----chHHHHHHHHHHhC--CCEE-EEECCCCCc--hhhhhcCce---ecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGL----GRIGSAVALRAKAF--GFNV-IFYDPYLPD--GIEKSLGLT---RVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGl----G~IG~~iA~~L~af--G~~V-i~~dr~~~~--~~~~~~gv~---~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+ |.||+..++.++.. +++| .++|+.... ...+..++. .+.++++++. +.|+|++++|..
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 100 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVA 100 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHH
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcH
Confidence 47999999 99999999999887 7786 578876532 233445553 5678999997 689999999843
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0085 Score=59.94 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=50.2
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCCEE-EEECCCCCchhh-hh-cCceecCCHHHHH----------hcCCEEEEeccCc
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGFNV-IFYDPYLPDGIE-KS-LGLTRVYTLQDLL----------FQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~~V-i~~dr~~~~~~~-~~-~gv~~~~sLdelL----------~~sDvVil~lPlt 241 (501)
.+|||||+ |.||+..++.++..+.++ .++|++...... +. .+...+.++++++ .+.|+|++++|..
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~ 83 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH 83 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence 58999999 789999999999889885 467877654322 22 2455567899988 5789999999843
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0048 Score=61.90 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=64.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCch------hhhh---c--C--ceecCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPDG------IEKS---L--G--LTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~~------~~~~---~--g--v~~~~sLdelL~~sDvVil~lPl 240 (501)
++|+|||.|.+|..+|..|...|. +|..||+..... .... + . +....+ .+.+++||+|+++...
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 479999999999999999988787 999999875321 1110 1 1 222235 7889999999998753
Q ss_pred c--h-hhh-hcc--c-------HHHHhcCCCCcEEEEcCCCCccCHHH
Q psy7383 241 N--E-HNH-HLI--N-------EFTIKQMRPGAFLVNTARGGLVDDDS 275 (501)
Q Consensus 241 t--~-~T~-~lI--~-------~~~l~~MK~gAilINvaRG~vVde~a 275 (501)
. + +++ .++ | .+.+....|++++|+++ ..+|.-.
T Consensus 80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t 125 (294)
T 1oju_A 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMT 125 (294)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHH
Confidence 2 1 111 111 1 13455568899999998 4466543
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.058 Score=54.15 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=55.0
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhCCCEEEEECCCC--CchhhhhcCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAFGFNVIFYDPYL--PDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~afG~~Vi~~dr~~--~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
+.|++|++||= +++.++++..+..||++|.+..|.. ... ....|+....+++|.++++|+|.. +-..
T Consensus 144 l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~-~~~~g~~~~~d~~eav~~aDvvy~-~~~q 215 (291)
T 3d6n_B 144 VKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRD-VEVFKVDVFDDVDKGIDWADVVIW-LRLQ 215 (291)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT-GGGGCEEEESSHHHHHHHCSEEEE-CCCC
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCch-HHHCCCEEEcCHHHHhCCCCEEEE-eCcc
Confidence 78999999996 8999999999999999999998753 222 224466667899999999999998 6543
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0045 Score=62.19 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=48.7
Q ss_pred eEEeeccchHHHH-HHHHHHhC-CCEEE-EECCCCCc--hhhhhcCce-ecCCHHHHHh--cCCEEEEeccCc
Q psy7383 177 TLGIVGLGRIGSA-VALRAKAF-GFNVI-FYDPYLPD--GIEKSLGLT-RVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 177 tVGIVGlG~IG~~-iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~gv~-~~~sLdelL~--~sDvVil~lPlt 241 (501)
+|||||+|.||+. ++..++.. +++|. ++|++... ...+.+++. .+.+++++|+ +.|+|++++|..
T Consensus 25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~ 97 (350)
T 4had_A 25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTS 97 (350)
T ss_dssp EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGG
T ss_pred EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCc
Confidence 7999999999985 56777765 67866 57877532 344556764 4579999996 479999999853
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0049 Score=57.92 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=50.1
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCc-eec-----CCHHHHHhcCCEEEEeccCc
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGL-TRV-----YTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv-~~~-----~sLdelL~~sDvVil~lPlt 241 (501)
..+.||+|.|.|. |.||+.+++.|...|++|++++|+.... .....++ +.+ .++.+.+.++|+|+.+....
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 4689999999997 9999999999999999999999875432 1111233 211 34567788899998877643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.012 Score=59.70 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=65.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-------CHHHHHh-----cCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-------TLQDLLF-----QSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-------sLdelL~-----~sDvVil~lP 239 (501)
.|++|.|+|.|.||..+++.++.+|+ +|++.+++..+ +..+++|...+. ++.+.+. ..|+|+-++.
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 271 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG 271 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 57899999999999999999999999 89999976543 445566754321 2333332 4799998875
Q ss_pred CchhhhhcccHHHHhcCCCC-cEEEEcCCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPG-AFLVNTARG 268 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~g-AilINvaRG 268 (501)
.. ++ -...++.++++ ..+|.++-.
T Consensus 272 ~~-~~----~~~~~~~l~~~~G~iv~~G~~ 296 (374)
T 1cdo_A 272 NV-GV----MRNALESCLKGWGVSVLVGWT 296 (374)
T ss_dssp CH-HH----HHHHHHTBCTTTCEEEECSCC
T ss_pred CH-HH----HHHHHHHhhcCCcEEEEEcCC
Confidence 32 11 24677889998 889888753
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0042 Score=62.37 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=60.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhh--hc-------C--ceecCCHHHHHhcCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEK--SL-------G--LTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~--~~-------g--v~~~~sLdelL~~sDvVil~lPlt 241 (501)
++|+|||.|.+|..+|..+...|. +|..+|...... ... .. . +....+. +.+++||+|++++...
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p 81 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP 81 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 589999999999999999998886 999999865321 000 00 1 2222456 6789999999997432
Q ss_pred h-----------hhhhccc--HHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 242 E-----------HNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 242 ~-----------~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
. .+..++. .+.+....+++++|+++- .+|.-
T Consensus 82 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN--Pv~~~ 125 (309)
T 1ur5_A 82 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN--PLDAM 125 (309)
T ss_dssp -------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS--SHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC--chHHH
Confidence 1 1111110 123333458999999754 45443
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0068 Score=56.22 Aligned_cols=65 Identities=18% Similarity=0.107 Sum_probs=47.2
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce-------ecCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT-------RVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~-------~~~sLdelL~~sDvVil~lPl 240 (501)
++|.|.| .|.||+.+++.|...|++|++.+|+.........+++ ...+++++++++|+|+.+...
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 6899999 6999999999999999999999987532111111221 112356778899999887654
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0036 Score=67.02 Aligned_cols=114 Identities=16% Similarity=0.196 Sum_probs=72.8
Q ss_pred CCeEEeeccchH--HHHHHHHHH---hC-CCEEEEECCCCCch-----hhh----h----cCceecCCHHHHHhcCCEEE
Q psy7383 175 GDTLGIVGLGRI--GSAVALRAK---AF-GFNVIFYDPYLPDG-----IEK----S----LGLTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 175 gktVGIVGlG~I--G~~iA~~L~---af-G~~Vi~~dr~~~~~-----~~~----~----~gv~~~~sLdelL~~sDvVi 235 (501)
.++|+|||.|.+ |.++|..|. ++ |.+|..||+..... ... . ..+....++++.+++||+|+
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI 82 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 82 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence 368999999997 566676664 33 88999999875310 000 1 11333357888999999999
Q ss_pred EeccCc---------------------hhhh-------h---------ccc--HHHHhcCCCCcEEEEcCCCCccCHHHH
Q psy7383 236 LHCTLN---------------------EHNH-------H---------LIN--EFTIKQMRPGAFLVNTARGGLVDDDSL 276 (501)
Q Consensus 236 l~lPlt---------------------~~T~-------~---------lI~--~~~l~~MK~gAilINvaRG~vVde~aL 276 (501)
++++.. .+|. + ++- .+.+....|+++|||++-.-=+-..++
T Consensus 83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~ 162 (480)
T 1obb_A 83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV 162 (480)
T ss_dssp ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence 999631 1110 1 110 234455579999999988644445555
Q ss_pred HHHHHcCCceEEE
Q psy7383 277 AAALKQGRIRAAA 289 (501)
Q Consensus 277 ~~aL~~g~I~GAa 289 (501)
.+ +...++.|.+
T Consensus 163 ~k-~p~~rviG~c 174 (480)
T 1obb_A 163 TR-TVPIKAVGFC 174 (480)
T ss_dssp HH-HSCSEEEEEC
T ss_pred HH-CCCCcEEecC
Confidence 45 6667777764
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=96.41 E-value=0.034 Score=56.29 Aligned_cols=95 Identities=14% Similarity=0.256 Sum_probs=67.4
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhC-CCEEEEECCCC---Cchh---hhhcCc--eecCCHHHHHhcCCEEEEeccC
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAF-GFNVIFYDPYL---PDGI---EKSLGL--TRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~af-G~~Vi~~dr~~---~~~~---~~~~gv--~~~~sLdelL~~sDvVil~lPl 240 (501)
|.|++|++||= +++.++++..+..+ |++|.+..|.. +... .++.|. ....+++|+++++|+|..-.=-
T Consensus 152 l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q 231 (310)
T 3csu_A 152 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ 231 (310)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC--
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence 78999999998 59999999999999 99999998753 2111 112243 3456899999999999875321
Q ss_pred ch----hh------hhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NE----HN------HHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~----~T------~~lI~~~~l~~MK~gAilINvaR 267 (501)
.+ +. ...++++.++.+|++++|.-+.-
T Consensus 232 ~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP 268 (310)
T 3csu_A 232 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLP 268 (310)
T ss_dssp ---------------CCBCGGGGTTCCTTCEEECCSC
T ss_pred ccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCC
Confidence 11 10 23467788888888888877753
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0037 Score=63.31 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=62.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCch------hhhh-----cCceec-CCHHHHHhcCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPDG------IEKS-----LGLTRV-YTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~~------~~~~-----~gv~~~-~sLdelL~~sDvVil~lPlt 241 (501)
++|+|||.|.||+.+|..+...|+ +|..+|...... +... ...... .+..+.+++||+|+++....
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 479999999999999999987776 999999876421 1110 112211 24567899999999987642
Q ss_pred h---hh--------hhccc--HHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 242 E---HN--------HHLIN--EFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 242 ~---~T--------~~lI~--~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
. ++ ..++. .+.+....|++++|+++-. +|.-
T Consensus 81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP--vd~~ 124 (314)
T 3nep_X 81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANP--LDVM 124 (314)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSS--HHHH
T ss_pred CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCc--hhHH
Confidence 1 11 11111 1344455789999999853 5443
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0083 Score=54.31 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=47.0
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhh-hcCcee-------cCCHHHHHhcCCEEEEeccC
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-SLGLTR-------VYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-~~gv~~-------~~sLdelL~~sDvVil~lPl 240 (501)
+++|.|+|. |.||+.+++.|...|++|++++|+....... ..+++. ..+++++++++|+|+.+...
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~ 77 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence 478999997 9999999999999999999999875321110 112221 12355678889999887654
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.38 E-value=0.013 Score=59.63 Aligned_cols=89 Identities=21% Similarity=0.199 Sum_probs=64.0
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-------CHHHHHh-----cCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-------TLQDLLF-----QSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-------sLdelL~-----~sDvVil~lP 239 (501)
.|++|.|+|.|.||..+++.++.+|+ +|++.+++... +..+++|...+. ++.+.+. ..|+|+-++.
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 270 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG 270 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence 57899999999999999999999999 89999976543 445566654321 2333332 4799888775
Q ss_pred CchhhhhcccHHHHhcCCCC-cEEEEcCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPG-AFLVNTAR 267 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~g-AilINvaR 267 (501)
.. ++ -...++.++++ ..+|.++-
T Consensus 271 ~~-~~----~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 271 RL-DT----MVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp CH-HH----HHHHHHHBCTTTCEEEECSC
T ss_pred CH-HH----HHHHHHHhhcCCcEEEEecc
Confidence 32 11 14567888888 88888864
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0027 Score=61.01 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=42.4
Q ss_pred CeEEeeccchHHHHHHHH--HHhCCCEEE-EECCCCCchhhhhcC--ceecCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALR--AKAFGFNVI-FYDPYLPDGIEKSLG--LTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~--L~afG~~Vi-~~dr~~~~~~~~~~g--v~~~~sLdelL~~sDvVil~lPl 240 (501)
++|+|||.|++|+.+++. ....|+++. ++|..+...-....+ +....++++++++.|+|++++|.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs 155 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA 155 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence 579999999999999993 455688765 567655432111122 33456788998777999999984
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0075 Score=61.33 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=62.9
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--h----hhhh-----cCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--G----IEKS-----LGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~----~~~~-----~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
.++|+|||.|.||..+|..|...|. +|..+|..... + +... .++....+..+.+++||+|+++....
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p 84 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN 84 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence 5789999999999999999988776 99999986421 1 1111 12222222346789999999987531
Q ss_pred --h-hhh-hcc--c-------HHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 242 --E-HNH-HLI--N-------EFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 242 --~-~T~-~lI--~-------~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
+ +++ .++ | .+.+....+++++|+++-. +|.-
T Consensus 85 ~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNP--vd~~ 128 (326)
T 3pqe_A 85 QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP--VDIL 128 (326)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS--HHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCh--HHHH
Confidence 1 111 111 1 1234445689999999853 5443
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.067 Score=54.06 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=72.1
Q ss_pred ccc-CCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC---Cchhhh-------hcC--ceecCCHHHHHhcCCEEEEe
Q psy7383 172 RIR-GDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL---PDGIEK-------SLG--LTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 172 ~L~-gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~~-------~~g--v~~~~sLdelL~~sDvVil~ 237 (501)
++. |++|++||= +++.++++..+..||++|.+..|.. +....+ ..| +....+++|.++++|||..-
T Consensus 142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~ 221 (307)
T 3tpf_A 142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD 221 (307)
T ss_dssp CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence 378 999999985 5788888888999999999998753 222211 223 44557999999999999875
Q ss_pred cc--Cch--h--------hhhcccHHHHhcCCCCcEEEEcC---CCCccC
Q psy7383 238 CT--LNE--H--------NHHLINEFTIKQMRPGAFLVNTA---RGGLVD 272 (501)
Q Consensus 238 lP--lt~--~--------T~~lI~~~~l~~MK~gAilINva---RG~vVd 272 (501)
.= ... + ...-++.+.++.+|++++|.-+. ||.=|+
T Consensus 222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~ 271 (307)
T 3tpf_A 222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVS 271 (307)
T ss_dssp CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBC
T ss_pred CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeC
Confidence 40 111 1 12447899999999999998886 454343
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0076 Score=60.70 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=47.6
Q ss_pred CCeEEeeccchHHHHHHHHHHhC--------CCEEE-EECCCCCc--hhhhhcCce-ecCCHHHHHh--cCCEEEEeccC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAF--------GFNVI-FYDPYLPD--GIEKSLGLT-RVYTLQDLLF--QSDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~af--------G~~Vi-~~dr~~~~--~~~~~~gv~-~~~sLdelL~--~sDvVil~lPl 240 (501)
--+|||||+|.||+.-++.++.+ +++|. ++|++... ...+.+++. .+.+++++|+ +.|+|++++|.
T Consensus 25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~ 104 (393)
T 4fb5_A 25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPN 104 (393)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCG
T ss_pred CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCCh
Confidence 35799999999999877766542 56755 57877643 344556764 4568999997 47999999995
Q ss_pred c
Q psy7383 241 N 241 (501)
Q Consensus 241 t 241 (501)
.
T Consensus 105 ~ 105 (393)
T 4fb5_A 105 Q 105 (393)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0091 Score=59.88 Aligned_cols=66 Identities=20% Similarity=0.146 Sum_probs=49.8
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCCEE-EEECCCCCchh-hhh-cCceecCCHHHHH-----------hcCCEEEEeccC
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGFNV-IFYDPYLPDGI-EKS-LGLTRVYTLQDLL-----------FQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~~V-i~~dr~~~~~~-~~~-~gv~~~~sLdelL-----------~~sDvVil~lPl 240 (501)
.+|||||+ |.||+..++.++..+.++ .++|+...... .+. .+...+.++++++ .+.|+|++++|.
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~ 83 (318)
T 3oa2_A 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN 83 (318)
T ss_dssp CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence 58999999 789999999999889875 45787754432 222 2455567889887 568999999985
Q ss_pred c
Q psy7383 241 N 241 (501)
Q Consensus 241 t 241 (501)
.
T Consensus 84 ~ 84 (318)
T 3oa2_A 84 Y 84 (318)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.013 Score=59.45 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=64.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-------CHHHHHh-----cCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-------TLQDLLF-----QSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-------sLdelL~-----~sDvVil~lP 239 (501)
.|++|.|+|.|.||..+++.++.+|+ +|++.+++..+ +..+++|...+. ++.+.+. ..|+|+-++.
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g 270 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG 270 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 57899999999999999999999999 89999976543 455667764321 2333332 4799988775
Q ss_pred CchhhhhcccHHHHhcCCCC-cEEEEcCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPG-AFLVNTAR 267 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~g-AilINvaR 267 (501)
.. ++ -...++.++++ ..+|.++-
T Consensus 271 ~~-~~----~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 271 RI-ET----MMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp CH-HH----HHHHHHTBCTTTCEEEECCC
T ss_pred CH-HH----HHHHHHHHhcCCCEEEEEcc
Confidence 32 21 24677889998 88888874
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.006 Score=61.07 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=68.7
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCCE-EEEECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGFN-VIFYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~~-Vi~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI~~~ 251 (501)
.++.|+|. |++|+.+++.++..|++ |...|+.... ....|+..+.+++|+.. ..|++++++|.. .+...+ ++
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g--~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~-~~~~~v-~e 89 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGG--QNVHGVPVFDTVKEAVKETDANASVIFVPAP-FAKDAV-FE 89 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTT--CEETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHH-HH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCC--ceECCEeeeCCHHHHhhcCCCCEEEEccCHH-HHHHHH-HH
Confidence 45788899 99999999999999998 3355654321 11257776778999998 899999999843 333333 23
Q ss_pred HHhcCCCCcEEEEcCCC-CccCHHHHHHHHHcCCce
Q psy7383 252 TIKQMRPGAFLVNTARG-GLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG-~vVde~aL~~aL~~g~I~ 286 (501)
.++. .... +|.++.| ...+++.|.+++++..+.
T Consensus 90 a~~~-Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~ 123 (294)
T 2yv1_A 90 AIDA-GIEL-IVVITEHIPVHDTMEFVNYAEDVGVK 123 (294)
T ss_dssp HHHT-TCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHC-CCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 3332 2232 3444444 223566888888887664
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.014 Score=61.73 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=70.2
Q ss_pred cccCCeEEeeccch----------HHHHHHHHHHhCCCEEEEECCCCCchhh-hhc-------------CceecCCHHHH
Q psy7383 172 RIRGDTLGIVGLGR----------IGSAVALRAKAFGFNVIFYDPYLPDGIE-KSL-------------GLTRVYTLQDL 227 (501)
Q Consensus 172 ~L~gktVGIVGlG~----------IG~~iA~~L~afG~~Vi~~dr~~~~~~~-~~~-------------gv~~~~sLdel 227 (501)
.+.|++|+|+|+-- -...+++.|...|++|.+|||....... ... ++..+.++.+.
T Consensus 326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (467)
T 2q3e_A 326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA 405 (467)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence 36899999999874 7789999999999999999998654321 111 23444578889
Q ss_pred HhcCCEEEEeccCchhhhhcccHH-HHhcCCCCcEEEEcCCCCccCH
Q psy7383 228 LFQSDCVSLHCTLNEHNHHLINEF-TIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 228 L~~sDvVil~lPlt~~T~~lI~~~-~l~~MK~gAilINvaRG~vVde 273 (501)
++++|+|++++... +-+. ++-+ ..+.|+...+++|+ |+ ++|.
T Consensus 406 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~ 448 (467)
T 2q3e_A 406 CDGAHAVVICTEWD-MFKE-LDYERIHKKMLKPAFIFDG-RR-VLDG 448 (467)
T ss_dssp HTTCSEEEECSCCG-GGGG-SCHHHHHHHSCSSCEEEES-SC-TTTT
T ss_pred HhCCcEEEEecCCh-hhhc-CCHHHHHHhcCCCCEEEeC-CC-cCCc
Confidence 99999999987653 3333 3444 44668876668886 65 3454
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0053 Score=63.24 Aligned_cols=67 Identities=19% Similarity=0.149 Sum_probs=51.5
Q ss_pred CCeEEeeccch---HHHHHHHHHHhCC-CEEE--EECCCCCc--hhhhhcCc---eecCCHHHHHhc-------CCEEEE
Q psy7383 175 GDTLGIVGLGR---IGSAVALRAKAFG-FNVI--FYDPYLPD--GIEKSLGL---TRVYTLQDLLFQ-------SDCVSL 236 (501)
Q Consensus 175 gktVGIVGlG~---IG~~iA~~L~afG-~~Vi--~~dr~~~~--~~~~~~gv---~~~~sLdelL~~-------sDvVil 236 (501)
-.+|||||+|. ||+..+..++..+ ++++ ++|+.... ...+.+|+ ..+.++++++.+ .|+|++
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i 91 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI 91 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence 35899999999 9999998887665 6776 46887543 33455677 456789999975 899999
Q ss_pred eccCc
Q psy7383 237 HCTLN 241 (501)
Q Consensus 237 ~lPlt 241 (501)
++|..
T Consensus 92 ~tp~~ 96 (398)
T 3dty_A 92 ATPNG 96 (398)
T ss_dssp ESCGG
T ss_pred CCCcH
Confidence 99954
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0095 Score=60.65 Aligned_cols=100 Identities=18% Similarity=0.096 Sum_probs=63.3
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hh----hh--h--cCceecCCHHHHHhcCCEEEEeccC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GI----EK--S--LGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~----~~--~--~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
-.+++|+|||.|.||+.+|..|...|. +|..+|..... +. .. . ..+....+..+.+++||+|+++...
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence 456899999999999999999987776 89999986421 11 00 0 1222223345779999999998653
Q ss_pred c--h-hhh-hcc--c-------HHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 241 N--E-HNH-HLI--N-------EFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 241 t--~-~T~-~lI--~-------~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
. + +|+ .++ | .+.+....+++++|+++- .+|.-
T Consensus 87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN--Pvdi~ 131 (326)
T 3vku_A 87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN--PVDIL 131 (326)
T ss_dssp C----------------CHHHHHHHHHTTTCCSEEEECSS--SHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC--chHHH
Confidence 2 1 122 122 1 234455578999999974 45543
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0082 Score=62.88 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=48.8
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEE-EEECCCCCch--hhh---hcC---ceecC----CHHHHHh--cCCEEEEecc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNV-IFYDPYLPDG--IEK---SLG---LTRVY----TLQDLLF--QSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~V-i~~dr~~~~~--~~~---~~g---v~~~~----sLdelL~--~sDvVil~lP 239 (501)
.+|||||+|.||+..++.++.. +++| .++|+..... ..+ ..| ...+. +++++|+ +.|+|++++|
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 100 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP 100 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence 4799999999999999998875 6775 4678765322 111 234 34455 8999997 5899999998
Q ss_pred Cc
Q psy7383 240 LN 241 (501)
Q Consensus 240 lt 241 (501)
..
T Consensus 101 ~~ 102 (444)
T 2ixa_A 101 WE 102 (444)
T ss_dssp GG
T ss_pred cH
Confidence 44
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.011 Score=59.58 Aligned_cols=114 Identities=14% Similarity=0.155 Sum_probs=67.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhhhh--c------CceecCCHHHHHhcCCEEEEeccCch
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIEKS--L------GLTRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~~~--~------gv~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
.++|+|||.|.+|..++..|...|. +|..+|..... +.... . .++...+-.+.+++||+|+++.+...
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~ 86 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR 86 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 3689999999999999999998887 99999976431 11111 1 11111122566999999999987422
Q ss_pred hhhhc------------cc--HHHHhcCCCCcEEEEcCCCCccCHH--HHHHH--HHcCCceEE--EEe
Q psy7383 243 HNHHL------------IN--EFTIKQMRPGAFLVNTARGGLVDDD--SLAAA--LKQGRIRAA--ALD 291 (501)
Q Consensus 243 ~T~~l------------I~--~~~l~~MK~gAilINvaRG~vVde~--aL~~a--L~~g~I~GA--aLD 291 (501)
..++ +. .+.+....+++++|+++- .+|.- .+.+. +...++.|. .||
T Consensus 87 -k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pv~~~~~~~~k~s~~p~~rviG~gt~Ld 152 (318)
T 1y6j_A 87 -KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN--PVDIITYMIQKWSGLPVGKVIGSGTVLD 152 (318)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS--SHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred -CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecC--cHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence 1111 10 123333468999999743 44443 33333 344577665 356
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.013 Score=59.48 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=64.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-------CHHHHHh-----cCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-------TLQDLLF-----QSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-------sLdelL~-----~sDvVil~lP 239 (501)
.|++|.|+|.|.||..+++.++.+|+ +|++.+++..+ +..+++|...+. ++.+.+. ..|+|+-++.
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g 269 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 269 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence 57899999999999999999999999 89999976543 445566654321 2333332 4799988775
Q ss_pred CchhhhhcccHHHHhcCCCC-cEEEEcCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPG-AFLVNTAR 267 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~g-AilINvaR 267 (501)
.. ++ -...++.++++ ..+|.++-
T Consensus 270 ~~-~~----~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 270 NV-KV----MRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp CH-HH----HHHHHHTBCTTTCEEEECSC
T ss_pred cH-HH----HHHHHHhhccCCcEEEEEec
Confidence 32 11 24677889998 88888874
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.024 Score=60.35 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=72.0
Q ss_pred cccCCeEEeecc----------chHHHHHHHHHHhCCCEEEEECCCCCchh-----hhhc-------CceecCCHHHHHh
Q psy7383 172 RIRGDTLGIVGL----------GRIGSAVALRAKAFGFNVIFYDPYLPDGI-----EKSL-------GLTRVYTLQDLLF 229 (501)
Q Consensus 172 ~L~gktVGIVGl----------G~IG~~iA~~L~afG~~Vi~~dr~~~~~~-----~~~~-------gv~~~~sLdelL~ 229 (501)
.+.|++|+|+|+ ..-...+++.|...|++|.+|||...... .+.+ .+..+.++.+.++
T Consensus 332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (481)
T 2o3j_A 332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR 411 (481)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence 378999999997 35678999999999999999999875321 1111 1344467888999
Q ss_pred cCCEEEEeccCchhhhhcccH-HHHhcCCCCcEEEEcCCCCccCHHHHH
Q psy7383 230 QSDCVSLHCTLNEHNHHLINE-FTIKQMRPGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~-~~l~~MK~gAilINvaRG~vVde~aL~ 277 (501)
++|+|++++... +-+. ++- +..+.|+...+++|+ |+ ++|.+.+.
T Consensus 412 ~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~~ 456 (481)
T 2o3j_A 412 GAHAIVVLTEWD-EFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKALR 456 (481)
T ss_dssp TCSEEEECSCCG-GGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHHH
T ss_pred CCCEEEEcCCcH-Hhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHHH
Confidence 999999987653 3333 344 444568877688887 65 45665443
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.01 Score=60.45 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=49.5
Q ss_pred CCeEEeeccchHHH-HHHHHHHhCCCEEE-EECCCCCc--hhhhhcC-ceecCCHHHHHhc--CCEEEEeccC
Q psy7383 175 GDTLGIVGLGRIGS-AVALRAKAFGFNVI-FYDPYLPD--GIEKSLG-LTRVYTLQDLLFQ--SDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVGlG~IG~-~iA~~L~afG~~Vi-~~dr~~~~--~~~~~~g-v~~~~sLdelL~~--sDvVil~lPl 240 (501)
-.+|||||+|.++. .++..++.-+++|. ++|+.... ...+..+ ...+.++++++.+ .|+|++++|.
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~ 98 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVS 98 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCH
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence 35899999999995 57777777889954 67876533 2334455 4556799999985 8999999984
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0038 Score=63.77 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=64.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC---C---HHHHHhcCCEEEEeccCchhhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY---T---LQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~---s---LdelL~~sDvVil~lPlt~~T~~ 246 (501)
.|.+|.|+|.|.||..+++.++.+|++|++.+++... +..+++|...+. + .+++....|+|+-++....
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~---- 269 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH---- 269 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHH----
Confidence 5789999999999999999999999999999976543 444556654321 1 1222346799888775321
Q ss_pred cccHHHHhcCCCCcEEEEcCCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG 268 (501)
. -...++.|+++..+|.++..
T Consensus 270 ~-~~~~~~~l~~~G~iv~~G~~ 290 (369)
T 1uuf_A 270 N-LDDFTTLLKRDGTMTLVGAP 290 (369)
T ss_dssp C-HHHHHTTEEEEEEEEECCCC
T ss_pred H-HHHHHHHhccCCEEEEeccC
Confidence 1 24567888999999988753
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0031 Score=62.82 Aligned_cols=88 Identities=20% Similarity=0.145 Sum_probs=66.0
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceec-----CC-HHHHHhcCCEEEEeccCchhhhh
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV-----YT-LQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~-----~s-LdelL~~sDvVil~lPlt~~T~~ 246 (501)
.|++|.|+| .|.||...++.++.+|++|++.++....+..+++|...+ .+ +.+.+...|+|+-++.. + .
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~-~---~ 227 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-D---V 227 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCH-H---H
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCc-H---H
Confidence 578999997 999999999999999999998875433345556676532 12 55556678999887652 1 1
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaR 267 (501)
+ ...++.++++..+|.++.
T Consensus 228 -~-~~~~~~l~~~G~iv~~g~ 246 (321)
T 3tqh_A 228 -G-IQSIDCLKETGCIVSVPT 246 (321)
T ss_dssp -H-HHHGGGEEEEEEEEECCS
T ss_pred -H-HHHHHhccCCCEEEEeCC
Confidence 2 567889999999999864
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.015 Score=59.16 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=64.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-------CHHHHHh-----cCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-------TLQDLLF-----QSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-------sLdelL~-----~sDvVil~lP 239 (501)
.|++|.|+|.|.||..+++.++.+|+ +|++.+++..+ +..+++|...+. ++.+.+. ..|+|+-++.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G 274 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 274 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence 57899999999999999999999999 89999976543 445566754321 2333332 4799988765
Q ss_pred CchhhhhcccHHHHhcCCCC-cEEEEcCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPG-AFLVNTAR 267 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~g-AilINvaR 267 (501)
.. ++ -...++.++++ ..+|.++-
T Consensus 275 ~~-~~----~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 275 TA-QT----LKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp CH-HH----HHHHHHTBCTTTCEEEECCC
T ss_pred CH-HH----HHHHHHHhhcCCCEEEEECC
Confidence 21 11 24677889998 88888864
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0082 Score=62.43 Aligned_cols=66 Identities=18% Similarity=0.316 Sum_probs=49.8
Q ss_pred CeEEeeccch---HHHHHHHHHHhCC-CEEE--EECCCCCc--hhhhhcCc---eecCCHHHHHhc-------CCEEEEe
Q psy7383 176 DTLGIVGLGR---IGSAVALRAKAFG-FNVI--FYDPYLPD--GIEKSLGL---TRVYTLQDLLFQ-------SDCVSLH 237 (501)
Q Consensus 176 ktVGIVGlG~---IG~~iA~~L~afG-~~Vi--~~dr~~~~--~~~~~~gv---~~~~sLdelL~~-------sDvVil~ 237 (501)
.+|||||+|. ||+..+..++..+ ++++ ++|+.... ...+.+++ ..+.++++++++ .|+|+++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~ 117 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIV 117 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEEC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEEC
Confidence 4899999999 9999988887765 6765 56876532 33445676 455789999976 8999999
Q ss_pred ccCc
Q psy7383 238 CTLN 241 (501)
Q Consensus 238 lPlt 241 (501)
+|..
T Consensus 118 tp~~ 121 (417)
T 3v5n_A 118 TPNH 121 (417)
T ss_dssp SCTT
T ss_pred CCcH
Confidence 9954
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.013 Score=60.39 Aligned_cols=94 Identities=23% Similarity=0.237 Sum_probs=63.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceec-----CCHHHHHh------cCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRV-----YTLQDLLF------QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~-----~sLdelL~------~sDvVil~lPl 240 (501)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++..+ +..+++|...+ .++.+.+. ..|+|+-++..
T Consensus 213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~ 292 (404)
T 3ip1_A 213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV 292 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence 58899999999999999999999999 99999976532 45566676433 12322221 48999988764
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
...+...+.+-....++++..+|.++-
T Consensus 293 ~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 293 PQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp HHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred cHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 322222211111233499999999875
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0036 Score=63.45 Aligned_cols=92 Identities=22% Similarity=0.240 Sum_probs=65.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC------CHHH-HHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY------TLQD-LLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~------sLde-lL~~sDvVil~lPlt~~T~ 245 (501)
.|++|.|+|.|.||..+++.++.+|++|++.+++..+ +..+++|...+. ++.+ +....|+|+.++..+. .
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~ 256 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D 256 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence 5789999999999999999999999999999976543 455566654321 2222 2236799998876421 1
Q ss_pred hcccHHHHhcCCCCcEEEEcCCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG 268 (501)
..+ ...++.|+++..+|.++..
T Consensus 257 ~~~-~~~~~~l~~~G~iv~~g~~ 278 (360)
T 1piw_A 257 IDF-NIMPKAMKVGGRIVSISIP 278 (360)
T ss_dssp CCT-TTGGGGEEEEEEEEECCCC
T ss_pred HHH-HHHHHHhcCCCEEEEecCC
Confidence 112 3457788999999988754
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.018 Score=58.57 Aligned_cols=95 Identities=21% Similarity=0.320 Sum_probs=61.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch------hhhh-----cC--ceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG------IEKS-----LG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~------~~~~-----~g--v~~~~sLdelL~~sDvVil~l 238 (501)
...++|+|||.|.+|..+|..|...|+ +|..||...... .... .. +....+. +.+++||+|+++.
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa 83 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA 83 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence 356799999999999999999988888 999999876421 1111 11 2222344 7899999999987
Q ss_pred cCc--h-hhhh-cc--c-------HHHHhcCCCCcEEEEcCCC
Q psy7383 239 TLN--E-HNHH-LI--N-------EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 239 Plt--~-~T~~-lI--~-------~~~l~~MK~gAilINvaRG 268 (501)
... + .|+. ++ | .+.+....+++++|+++-.
T Consensus 84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNP 126 (324)
T 3gvi_A 84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP 126 (324)
T ss_dssp SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 521 1 1111 11 1 1233334589999999853
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.015 Score=62.27 Aligned_cols=97 Identities=13% Similarity=0.313 Sum_probs=70.3
Q ss_pred cccCCeEEeeccc----------hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 172 RIRGDTLGIVGLG----------RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 172 ~L~gktVGIVGlG----------~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
.++|++|+|+|+- .=...+++.|...|.+|.+|||.... . ..+....++++.++++|+|++++...
T Consensus 350 ~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~-~---~~~~~~~~~~~~~~~ad~vvi~t~~~ 425 (478)
T 3g79_A 350 KMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN-Y---PGVEISDNLEEVVRNADAIVVLAGHS 425 (478)
T ss_dssp CSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC-B---TTBCEESCHHHHHTTCSEEEECSCCH
T ss_pred CCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc-c---cCcceecCHHHHHhcCCEEEEecCCH
Confidence 4789999999974 23689999999999999999998752 1 12333468999999999999987643
Q ss_pred hhhhhccc-HHHHhcCC-CCcEEEEcCCCCccCHHHH
Q psy7383 242 EHNHHLIN-EFTIKQMR-PGAFLVNTARGGLVDDDSL 276 (501)
Q Consensus 242 ~~T~~lI~-~~~l~~MK-~gAilINvaRG~vVde~aL 276 (501)
+-+. ++ +...+.|+ +..+|+|+ |+ +.|.+.+
T Consensus 426 -~f~~-~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~~ 458 (478)
T 3g79_A 426 -AYSS-LKADWAKKVSAKANPVIIDG-RN-VIEPDEF 458 (478)
T ss_dssp -HHHS-CCHHHHHHHHCCSSCEEEES-SS-CSCHHHH
T ss_pred -HHHh-hhHHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence 3333 34 34455677 47899995 65 4565544
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0048 Score=62.11 Aligned_cols=89 Identities=20% Similarity=0.169 Sum_probs=61.0
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceec-----CCHHHHHh------cCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRV-----YTLQDLLF------QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~-----~sLdelL~------~sDvVil~lPl 240 (501)
.|++|.|+|.|.||+.+++.++.+|+ +|++.+++... +..+++|...+ .++.+.+. ..|+|+.++..
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~ 246 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA 246 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 68899999999999999999999999 99999986432 33445554322 12322221 46888877653
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.+. -...++.|+++..+|.++.
T Consensus 247 ~~~-----~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 247 PKA-----LEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp HHH-----HHHHHHHEEEEEEEEECCC
T ss_pred HHH-----HHHHHHHHhcCCEEEEEcc
Confidence 211 1455677788888887764
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0069 Score=60.81 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=64.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC-----CHHHHH----hcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY-----TLQDLL----FQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~-----sLdelL----~~sDvVil~lPlt~~ 243 (501)
.|++|.|+|.|.||..+++.++.+|++|++.+++... +..+++|...+. ++.+.+ ...|+|+.++....
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~- 242 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKP- 242 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHH-
Confidence 4789999999999999999999999999999986432 344456654321 222222 35799988765322
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+ -+..++.|+++..+|.++..
T Consensus 243 ~----~~~~~~~l~~~G~~v~~g~~ 263 (339)
T 1rjw_A 243 A----FQSAYNSIRRGGACVLVGLP 263 (339)
T ss_dssp H----HHHHHHHEEEEEEEEECCCC
T ss_pred H----HHHHHHHhhcCCEEEEeccc
Confidence 1 25667888999999998764
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.018 Score=57.17 Aligned_cols=107 Identities=7% Similarity=0.073 Sum_probs=76.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCch----------
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNE---------- 242 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~---------- 242 (501)
+.|++|.|+|.......+++.|...|++|.++.-... .....|.....++.+.++++|+|++-.|...
T Consensus 5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~--~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a 82 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQL--DHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFS 82 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTS--SCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSC
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEecccc--ccccccceeccchHHHHhcCCEEEeccccccCCcccccccc
Confidence 6788999999999999999999999999987742111 1112244444456778899999987443221
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
.+...++++.++.+++..+++ ++ +|..++++++.+..|.
T Consensus 83 ~~~~~~~~~~l~~~~~l~~i~-~g----~~~~d~~~~~~~~gi~ 121 (300)
T 2rir_A 83 NEEVVLKQDHLDRTPAHCVIF-SG----ISNAYLENIAAQAKRK 121 (300)
T ss_dssp SSCEECCHHHHHTSCTTCEEE-ES----SCCHHHHHHHHHTTCC
T ss_pred cCCccchHHHHhhcCCCCEEE-Ee----cCCHHHHHHHHHCCCE
Confidence 223347899999999998887 32 3778877777777776
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.015 Score=59.80 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=55.5
Q ss_pred CCeEEeec-cchHHHHHHHHHHhCC-CEEEEECCCCCch--hhhh----cCc---e-ecCCHHHHHhcCCEEEEeccCch
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAFG-FNVIFYDPYLPDG--IEKS----LGL---T-RVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~afG-~~Vi~~dr~~~~~--~~~~----~gv---~-~~~sLdelL~~sDvVil~lPlt~ 242 (501)
..+|+|+| +|.||+.+++.|.... +++.+.......+ .... .+. . .+.+ ++.+.++|+|++|+|...
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~~ 94 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHGT 94 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTTT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCchh
Confidence 35899999 9999999999998765 4777775443221 1111 111 0 0112 455678999999998432
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
. .+.....+.|+.+|+.+--
T Consensus 95 s------~~~a~~~~aG~~VId~sa~ 114 (359)
T 1xyg_A 95 T------QEIIKELPTALKIVDLSAD 114 (359)
T ss_dssp H------HHHHHTSCTTCEEEECSST
T ss_pred H------HHHHHHHhCCCEEEECCcc
Confidence 1 2333333778999999753
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0061 Score=65.11 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=71.3
Q ss_pred CCeEEeeccchH-HHHHHHHHHhC-----CCEEEEECCCCCch-----hhh----h----cCceecCCHHHHHhcCCEEE
Q psy7383 175 GDTLGIVGLGRI-GSAVALRAKAF-----GFNVIFYDPYLPDG-----IEK----S----LGLTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 175 gktVGIVGlG~I-G~~iA~~L~af-----G~~Vi~~dr~~~~~-----~~~----~----~gv~~~~sLdelL~~sDvVi 235 (501)
.++|+|||.|.. +.++|..|... +.+|..||+..... ... . ..+....++++.+++||+|+
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV 107 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 107 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence 458999999998 66677666554 66899999875310 000 1 11233357888999999999
Q ss_pred EeccCch---hhh----------------------------hccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 236 LHCTLNE---HNH----------------------------HLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 236 l~lPlt~---~T~----------------------------~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+++|... .++ .++- .+.+....|+++|||++-.-=+-..++.+....
T Consensus 108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~ 187 (472)
T 1u8x_X 108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN 187 (472)
T ss_dssp ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence 9998621 111 1110 234445569999999987643334444444434
Q ss_pred CCceEE
Q psy7383 283 GRIRAA 288 (501)
Q Consensus 283 g~I~GA 288 (501)
.++.|.
T Consensus 188 ~rViG~ 193 (472)
T 1u8x_X 188 SKILNI 193 (472)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 467664
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.016 Score=57.37 Aligned_cols=102 Identities=20% Similarity=0.170 Sum_probs=64.6
Q ss_pred CeEEeeccchHHHHHHHHHHh----CCCEEE-EECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhcc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKA----FGFNVI-FYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~a----fG~~Vi-~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI 248 (501)
.+|||||+|.||+..++.+.. -++++. ++|++.. .+..++. ..+++++++ +.|+|++++|.... .
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~---a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H--~-- 79 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL---GSLDEVR-QISLEDALRSQEIDVAYICSESSSH--E-- 79 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC---CEETTEE-BCCHHHHHHCSSEEEEEECSCGGGH--H--
T ss_pred ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH---HHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhH--H--
Confidence 479999999999999988864 467765 5676432 2234554 368999997 68999999984322 2
Q ss_pred cHHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHcCCce
Q psy7383 249 NEFTIKQMRPGA-FLVNT-ARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 249 ~~~~l~~MK~gA-ilINv-aRG~vVde~aL~~aL~~g~I~ 286 (501)
+-.++.++.|. +|+.- ---.+-+.+.|+++.++..+.
T Consensus 80 -~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 118 (294)
T 1lc0_A 80 -DYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV 118 (294)
T ss_dssp -HHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence 12223344444 66653 111233556777777766554
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.012 Score=51.57 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=71.0
Q ss_pred CeEEeecc----chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVGL----GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVGl----G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
++|+|||. +.+|..+.+.|+..|++|+..++...+ -.|...+.+++|+=. -|++++++|. +.+..++. +
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v~-e 77 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE----VLGKTIINERPVIEG-VDTVTLYINP-QNQLSEYN-Y 77 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE----ETTEECBCSCCCCTT-CCEEEECSCH-HHHGGGHH-H
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc----CCCeeccCChHHCCC-CCEEEEEeCH-HHHHHHHH-H
Confidence 68999998 579999999999999999999987432 245555567777766 9999999983 34455553 3
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
..+ +...+++++. | ..++++.+.+++..|.
T Consensus 78 ~~~-~g~k~v~~~~--G--~~~~e~~~~a~~~Gir 107 (122)
T 3ff4_A 78 ILS-LKPKRVIFNP--G--TENEELEEILSENGIE 107 (122)
T ss_dssp HHH-HCCSEEEECT--T--CCCHHHHHHHHHTTCE
T ss_pred HHh-cCCCEEEECC--C--CChHHHHHHHHHcCCe
Confidence 333 3444666654 3 2467888888887776
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0092 Score=60.10 Aligned_cols=61 Identities=23% Similarity=0.197 Sum_probs=48.2
Q ss_pred CCeEEeeccchHHH-HHHHHHHhC-CCEEE-EECCCCCchhhhhcCceecCCHHHHHhc---CCEEEEeccC
Q psy7383 175 GDTLGIVGLGRIGS-AVALRAKAF-GFNVI-FYDPYLPDGIEKSLGLTRVYTLQDLLFQ---SDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVGlG~IG~-~iA~~L~af-G~~Vi-~~dr~~~~~~~~~~gv~~~~sLdelL~~---sDvVil~lPl 240 (501)
-.+|||||+|.||+ ..++.++.. +++|. ++|+... ..++..+.++++++++ .|+|++++|.
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~-----~~g~~~~~~~~~ll~~~~~vD~V~i~tp~ 91 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT-----VEGVNSYTTIEAMLDAEPSIDAVSLCMPP 91 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC-----CTTSEEESSHHHHHHHCTTCCEEEECSCH
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh-----hcCCCccCCHHHHHhCCCCCCEEEEeCCc
Confidence 35899999999998 788888876 67755 5777643 2466667799999876 8999999983
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.016 Score=61.70 Aligned_cols=99 Identities=14% Similarity=0.215 Sum_probs=70.4
Q ss_pred cccCCeEEeeccc----------hHHHHHHHHHHhCCCEEEEECCCCCchhhhhc------------CceecCCHHHHHh
Q psy7383 172 RIRGDTLGIVGLG----------RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSL------------GLTRVYTLQDLLF 229 (501)
Q Consensus 172 ~L~gktVGIVGlG----------~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~------------gv~~~~sLdelL~ 229 (501)
.+.|++|+|+|+- .=...+++.|...|++|.+|||...+...+.+ .+..+.++++.++
T Consensus 325 ~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (478)
T 2y0c_A 325 DLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAAR 404 (478)
T ss_dssp CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHTT
T ss_pred cCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHHh
Confidence 4789999999984 35678999999999999999998643222222 2555668899999
Q ss_pred cCCEEEEeccCchhhhhcccHHHH-hcCCCCcEEEEcCCCCccCHHH
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTI-KQMRPGAFLVNTARGGLVDDDS 275 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l-~~MK~gAilINvaRG~vVde~a 275 (501)
++|+|++++... +-+. ++-+.+ +.|+ ..++||+ |+ +.|.+.
T Consensus 405 ~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~~ 446 (478)
T 2y0c_A 405 DADALVIVTEWK-IFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPET 446 (478)
T ss_dssp TCSEEEECSCCG-GGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHHH
T ss_pred CCCEEEEecCCh-Hhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHHH
Confidence 999999987754 3333 344444 4566 4788888 54 456543
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.017 Score=59.45 Aligned_cols=95 Identities=11% Similarity=0.102 Sum_probs=60.7
Q ss_pred CeEEeec-cchHHHHHHHHHHhCC------CEEEEECCCCC--chhh---------hhcCceecCCHHHHHhcCCEEEEe
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFG------FNVIFYDPYLP--DGIE---------KSLGLTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG------~~Vi~~dr~~~--~~~~---------~~~gv~~~~sLdelL~~sDvVil~ 237 (501)
++|+|+| .|.+|+.+.++|...+ .+|..+..+.. .... ....+... +. +.+.++|+|++|
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~DvVf~a 87 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPT-EA-AVLGGHDAVFLA 87 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEEC-CH-HHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccC-CH-HHhcCCCEEEEC
Confidence 5899999 9999999999998776 47776643221 1111 01111222 33 346699999999
Q ss_pred ccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q psy7383 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278 (501)
Q Consensus 238 lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~ 278 (501)
+|.+ ...+....++.|..+|+.+.---.+..+.++
T Consensus 88 lg~~------~s~~~~~~~~~G~~vIDlSa~~R~~~~~~~~ 122 (352)
T 2nqt_A 88 LPHG------HSAVLAQQLSPETLIIDCGADFRLTDAAVWE 122 (352)
T ss_dssp CTTS------CCHHHHHHSCTTSEEEECSSTTTCSCHHHHH
T ss_pred CCCc------chHHHHHHHhCCCEEEEECCCccCCcchhhh
Confidence 9854 2344444456789999998655455545444
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.011 Score=59.72 Aligned_cols=90 Identities=24% Similarity=0.259 Sum_probs=64.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC--C---HH----HHH----hcCCEEEEec
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY--T---LQ----DLL----FQSDCVSLHC 238 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~--s---Ld----elL----~~sDvVil~l 238 (501)
.|++|.|+|.|.||..+++.++.+|+ +|++.+++..+ +..+++|...+. + -+ ++. ...|+|+-++
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~ 250 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 250 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence 57899999999999999999999999 99999876532 455566764321 1 11 222 2489999887
Q ss_pred cCchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 239 TLNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 239 Plt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
... .+ -...++.++++..+|.++-.
T Consensus 251 g~~-~~----~~~~~~~l~~~G~iv~~G~~ 275 (356)
T 1pl8_A 251 GAE-AS----IQAGIYATRSGGTLVLVGLG 275 (356)
T ss_dssp CCH-HH----HHHHHHHSCTTCEEEECSCC
T ss_pred CCh-HH----HHHHHHHhcCCCEEEEEecC
Confidence 532 11 14567889999999998753
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0041 Score=63.53 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=61.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hh----hh--hc----CceecCCHHHHHhcCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GI----EK--SL----GLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~----~~--~~----gv~~~~sLdelL~~sDvVil~lP 239 (501)
..++|+|||.|.||..+|..+...|+ +|..+|..... +. .. .+ .+....+.++ +++||+|+++..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG 98 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG 98 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence 56899999999999999999988887 99999986421 11 11 00 1122235555 999999999864
Q ss_pred Cch---hhh--------hccc--HHHHhcCCCCcEEEEcCCC
Q psy7383 240 LNE---HNH--------HLIN--EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt~---~T~--------~lI~--~~~l~~MK~gAilINvaRG 268 (501)
... +++ .++. .+.+....+++++|+++-.
T Consensus 99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP 140 (330)
T 3ldh_A 99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL 140 (330)
T ss_dssp CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence 311 111 1111 1234445899999999853
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0066 Score=59.77 Aligned_cols=87 Identities=20% Similarity=0.174 Sum_probs=60.2
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCH---H---HHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTL---Q---DLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sL---d---elL~~sDvVil~lPlt~~T~ 245 (501)
.|++|.|+|. |.||+.+++.++.+|++|++.+++... +..+++|...+.+. + +.+...|+|+. +.. +
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~--~-- 199 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG--K-- 199 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC--T--
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH--H--
Confidence 4789999998 999999999999999999999986432 34455665432221 2 22356788877 543 1
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.-...++.|+++..+|.++-
T Consensus 200 --~~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 200 --EVEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp --THHHHHTTEEEEEEEEEC--
T ss_pred --HHHHHHHhhccCCEEEEEeC
Confidence 12567778888888888764
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.019 Score=60.58 Aligned_cols=87 Identities=11% Similarity=0.157 Sum_probs=65.4
Q ss_pred cccCCeEEeeccc----------hHHHHHHHHHHhC-CCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 172 RIRGDTLGIVGLG----------RIGSAVALRAKAF-GFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 172 ~L~gktVGIVGlG----------~IG~~iA~~L~af-G~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
.+.|++|+|+|+- .-...+++.|... |++|.+|||..... ....++++.++++|+|++++..
T Consensus 312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-------~~~~~~~~~~~~ad~vvi~t~~ 384 (431)
T 3ojo_A 312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-------FVEHDMSHAVKDASLVLILSDH 384 (431)
T ss_dssp HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-------TBCSTTHHHHTTCSEEEECSCC
T ss_pred hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-------cccCCHHHHHhCCCEEEEecCC
Confidence 4789999999974 3468999999999 99999999987542 1245789999999999998764
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCCCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaRG~ 269 (501)
. +-+. ++-+.++.|+ ..++||+ |+-
T Consensus 385 ~-~f~~-~d~~~~~~~~-~~~i~D~-r~~ 409 (431)
T 3ojo_A 385 S-EFKN-LSDSHFDKMK-HKVIFDT-KNV 409 (431)
T ss_dssp G-GGTS-CCGGGGTTCS-SCEEEES-SCC
T ss_pred H-HHhc-cCHHHHHhCC-CCEEEEC-CCC
Confidence 3 3333 3444456776 6788886 653
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.016 Score=58.28 Aligned_cols=90 Identities=21% Similarity=0.209 Sum_probs=64.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec------CC-HHHH---H-----hcCCEEEEe
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV------YT-LQDL---L-----FQSDCVSLH 237 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~------~s-Ldel---L-----~~sDvVil~ 237 (501)
.|++|.|+|.|.||..+++.++.+|++|++.+++... +..+++|...+ .+ .+++ . ...|+|+.+
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~ 247 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 247 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence 5789999999999999999999999999999876432 34455665321 11 2233 2 258999988
Q ss_pred ccCchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 238 lPlt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+... .+ -...++.++++..+|.++..
T Consensus 248 ~g~~-~~----~~~~~~~l~~~G~iv~~G~~ 273 (352)
T 1e3j_A 248 SGNE-KC----ITIGINITRTGGTLMLVGMG 273 (352)
T ss_dssp SCCH-HH----HHHHHHHSCTTCEEEECSCC
T ss_pred CCCH-HH----HHHHHHHHhcCCEEEEEecC
Confidence 7532 11 14567889999999998753
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0079 Score=55.79 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=46.1
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCce-------e-cCCHHHHHhcCCEEEEeccCc
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLT-------R-VYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~-------~-~~sLdelL~~sDvVil~lPlt 241 (501)
++|.|.| .|.||+.+++.|...|++|++++|+....... .+++ . ..++++++.++|+|+.+....
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~ 74 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG 74 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-CCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence 3688998 89999999999999999999999875321100 1111 1 123455678899998877654
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.019 Score=58.23 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=68.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch------hhhh-----cC--ceecCCHHHHHhcCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG------IEKS-----LG--LTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~------~~~~-----~g--v~~~~sLdelL~~sDvVil~lP 239 (501)
..++|+|||.|.||..+|..|...|+ +|..+|...... +... .. +....+ .+.+++||+|+++..
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag 82 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAG 82 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCC
Confidence 35789999999999999999988777 999999876421 1110 01 221223 478999999999864
Q ss_pred Cc--h-hhh--------hccc--HHHHhcCCCCcEEEEcCCCCccCHHH--HHHH--HHcCCceEEE
Q psy7383 240 LN--E-HNH--------HLIN--EFTIKQMRPGAFLVNTARGGLVDDDS--LAAA--LKQGRIRAAA 289 (501)
Q Consensus 240 lt--~-~T~--------~lI~--~~~l~~MK~gAilINvaRG~vVde~a--L~~a--L~~g~I~GAa 289 (501)
.. + .|+ .++. .+.+....|++++|+++ ..+|.-. +.+. +...++.|.+
T Consensus 83 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t~~~~k~sg~p~~rviG~~ 147 (321)
T 3p7m_A 83 VPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMVNMLQKFSGVPDNKIVGMA 147 (321)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred cCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHHHHHHHhcCCCHHHEEeec
Confidence 32 1 111 1111 12333345899999995 3455433 2222 2224566654
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0071 Score=62.36 Aligned_cols=66 Identities=20% Similarity=0.189 Sum_probs=48.7
Q ss_pred CeEEeeccchHHHHHHHHHHhC---------CCEEE-EECCCCCc--hhhhhcCce-ecCCHHHHHh--cCCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF---------GFNVI-FYDPYLPD--GIEKSLGLT-RVYTLQDLLF--QSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af---------G~~Vi-~~dr~~~~--~~~~~~gv~-~~~sLdelL~--~sDvVil~lPl 240 (501)
.+|||||+|.||+..++.++.. +.+|. ++|+.... ...+.+++. .+.+++++|+ +.|+|++++|.
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~ 106 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN 106 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence 4899999999999988888654 45655 56876532 334556664 4568999996 57999999985
Q ss_pred c
Q psy7383 241 N 241 (501)
Q Consensus 241 t 241 (501)
.
T Consensus 107 ~ 107 (412)
T 4gqa_A 107 H 107 (412)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.018 Score=58.62 Aligned_cols=89 Identities=22% Similarity=0.218 Sum_probs=64.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-------CHHHHHh-----cCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-------TLQDLLF-----QSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-------sLdelL~-----~sDvVil~lP 239 (501)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++..+ +..+++|...+. ++.+.+. ..|+|+-++.
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g 272 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG 272 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence 58899999999999999999999999 89999977643 556667764321 2333322 3799988765
Q ss_pred CchhhhhcccHHHHhcCCCC-cEEEEcCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPG-AFLVNTAR 267 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~g-AilINvaR 267 (501)
.. ++ -...++.++++ ..+|.++-
T Consensus 273 ~~-~~----~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 273 NV-SV----MRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp CH-HH----HHHHHHTBCTTTCEEEECSC
T ss_pred CH-HH----HHHHHHHhhccCCEEEEEcc
Confidence 22 11 24567888986 88888864
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0049 Score=64.83 Aligned_cols=114 Identities=17% Similarity=0.094 Sum_probs=73.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC---c--hhhhhcCceec--CCHHHHHhc-CCEEEEe--ccC-
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP---D--GIEKSLGLTRV--YTLQDLLFQ-SDCVSLH--CTL- 240 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~---~--~~~~~~gv~~~--~sLdelL~~-sDvVil~--lPl- 240 (501)
++.+|+|.|||+|..|.++|+.|+..|++|.++|.+.. . ...++.|++.. ...++++.+ +|+|++. +|.
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~ 85 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN 85 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence 47899999999999999999999999999999998642 1 12234566432 123456676 8999886 332
Q ss_pred chhh-----hh--cccH-HHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 241 NEHN-----HH--LINE-FTIKQ-MRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 241 t~~T-----~~--lI~~-~~l~~-MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
+++. ++ ++.+ +.+.. ++...+-|--+.|+.-...-|...|++...
T Consensus 86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 139 (451)
T 3lk7_A 86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ 139 (451)
T ss_dssp SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 2221 11 3433 33333 444344455567887777777777776443
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.014 Score=58.38 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=67.8
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCCE-EEEECCCCCchhhhhcCceecCCHHHHHh--c-CCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGFN-VIFYDPYLPDGIEKSLGLTRVYTLQDLLF--Q-SDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~~-Vi~~dr~~~~~~~~~~gv~~~~sLdelL~--~-sDvVil~lPlt~~T~~lI~~ 250 (501)
.++.|+|. |++|+.+++.++..|++ |...|+.... ....|+..+.+++|+.. . .|++++++|.. .+...+ +
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g--~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~~~~~v-~ 89 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGG--SEVHGVPVYDSVKEALAEHPEINTSIVFVPAP-FAPDAV-Y 89 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTT--CEETTEEEESSHHHHHHHCTTCCEEEECCCGG-GHHHHH-H
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCC--ceECCEeeeCCHHHHhhcCCCCCEEEEecCHH-HHHHHH-H
Confidence 45777798 99999999999988998 3356654321 11257776778999987 5 99999999843 333333 2
Q ss_pred HHHhcCCCCcEEEEcCCC-CccCHHHHHHHHHcCCce
Q psy7383 251 FTIKQMRPGAFLVNTARG-GLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK~gAilINvaRG-~vVde~aL~~aL~~g~I~ 286 (501)
+.++. .-.. +|.++.| ...+++.|.+++++..+.
T Consensus 90 ea~~~-Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~ 124 (297)
T 2yv2_A 90 EAVDA-GIRL-VVVITEGIPVHDTMRFVNYARQKGAT 124 (297)
T ss_dssp HHHHT-TCSE-EEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred HHHHC-CCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 33332 2232 3444444 123456888888887664
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0083 Score=60.86 Aligned_cols=88 Identities=17% Similarity=0.060 Sum_probs=59.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-----CCHHHH----Hh--cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-----YTLQDL----LF--QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-----~sLdel----L~--~sDvVil~lPlt 241 (501)
.|++|.|+|.|.||..+++.++.+|++|++.+++..+ +..+++|...+ .++.+. .. ..|+|+-++. .
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~ 267 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-G 267 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-S
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-h
Confidence 5889999999999999999999999999999976432 34455554322 122221 11 4677777654 1
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+ .-...++.|+++..+|.++.
T Consensus 268 -~----~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 268 -A----GLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp -S----CHHHHHHHEEEEEEEEEECC
T ss_pred -H----HHHHHHHHhhcCCEEEEEec
Confidence 1 12456677777777777754
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.11 Score=53.27 Aligned_cols=94 Identities=12% Similarity=0.147 Sum_probs=66.9
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC---Cchhh-------hhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL---PDGIE-------KSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~-------~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
.+.|+||++||= +++.++++..+..||++|.+..|.. +.... +..| +....+++ .++++|||..-+
T Consensus 172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~ 250 (339)
T 4a8t_A 172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV 250 (339)
T ss_dssp CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence 378999999986 6788899999999999999998753 21111 2234 44556899 999999998632
Q ss_pred --cCc------hh----h--hhcccHHHHhcCCCCcEEEEcC
Q psy7383 239 --TLN------EH----N--HHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 239 --Plt------~~----T--~~lI~~~~l~~MK~gAilINva 266 (501)
... .+ . ..-++.+.++++|++++|.-+.
T Consensus 251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL 292 (339)
T 4a8t_A 251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL 292 (339)
T ss_dssp SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence 110 11 1 1446888888888888888775
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.031 Score=59.15 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=71.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEE-EECCCC--------Cch-h---hhhcC-------ceecCCHHHHHh-c
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVI-FYDPYL--------PDG-I---EKSLG-------LTRVYTLQDLLF-Q 230 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi-~~dr~~--------~~~-~---~~~~g-------v~~~~sLdelL~-~ 230 (501)
+++|+||.|.|+|++|+.+|+.|..+|++|+ +.|.+- +.+ + ....+ .+.+ +.++++. +
T Consensus 232 ~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~~~ 310 (440)
T 3aog_A 232 QVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGLP 310 (440)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTTCC
T ss_pred CccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-CchhhhcCC
Confidence 6899999999999999999999999999998 445421 111 0 01111 2322 4567654 7
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
|||++-|.. .+.|+.+....++ -.+++-.+-+.+ ..++ .+.|.++.|.
T Consensus 311 ~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~-t~eA-~~iL~~~GI~ 358 (440)
T 3aog_A 311 VEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPT-TPAA-DDILLEKGVL 358 (440)
T ss_dssp CSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHHTCE
T ss_pred CcEEEecCC-----cCccchhhHHHcC-CcEEEecCcccc-CHHH-HHHHHHCCCE
Confidence 999987743 5677777777774 557777777775 4443 3555665554
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0065 Score=55.77 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=56.4
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC-----CH-HHHHh-----cCCEEEEeccC
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY-----TL-QDLLF-----QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~-----sL-delL~-----~sDvVil~lPl 240 (501)
.|++|.|+| .|.||+.+++.++..|++|++.+++... +..++.|...+. +. +++.+ ..|+|+.++.
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g- 116 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA- 116 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc-
Confidence 578999999 7999999999999999999999876432 122333432110 11 12211 3677776542
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.+ .-...++.|+++..+|+++.
T Consensus 117 -~~----~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 117 -GE----AIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp -TH----HHHHHHHTEEEEEEEEECSC
T ss_pred -hH----HHHHHHHHhccCCEEEEEcC
Confidence 11 12456677777777777765
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.012 Score=59.99 Aligned_cols=86 Identities=16% Similarity=0.069 Sum_probs=51.2
Q ss_pred eEEeeccchHHHHHHHHHHhC-CCEEEE-ECCCCCc--hhhhhcCcee-----------------cCCHHHHHhcCCEEE
Q psy7383 177 TLGIVGLGRIGSAVALRAKAF-GFNVIF-YDPYLPD--GIEKSLGLTR-----------------VYTLQDLLFQSDCVS 235 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~af-G~~Vi~-~dr~~~~--~~~~~~gv~~-----------------~~sLdelL~~sDvVi 235 (501)
+|||+|+|.||+.+++.|... +++|.+ .|+.... ......++.. ..++++++.++|+|+
T Consensus 3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~ 82 (340)
T 1b7g_O 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (340)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence 799999999999999999765 567654 4554221 1112222221 124456667899999
Q ss_pred EeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 236 LHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 236 l~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.++|..-..... ... ++.|+.+|..+-
T Consensus 83 ~aTp~~~s~~~a--~~~---~~aG~kvV~~sa 109 (340)
T 1b7g_O 83 DTTPNGVGAQYK--PIY---LQLQRNAIFQGG 109 (340)
T ss_dssp ECCSTTHHHHHH--HHH---HHTTCEEEECTT
T ss_pred ECCCCchhHHHH--HHH---HHcCCeEEEeCC
Confidence 998854221111 122 244666666644
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.014 Score=58.57 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=63.7
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec------CCHHHHHh-----cCCEEEEeccC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV------YTLQDLLF-----QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~------~sLdelL~-----~sDvVil~lPl 240 (501)
.|++|.|+|. |.||+.+++.++..|++|++.+++... +..+++|...+ .++.+.+. ..|+|+.++..
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~ 248 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS 248 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence 5789999999 899999999999999999999986543 33344554321 23434333 47888877653
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.. .-...++.|+++..+|+++..
T Consensus 249 ~~-----~~~~~~~~l~~~G~iv~~g~~ 271 (347)
T 2hcy_A 249 EA-----AIEASTRYVRANGTTVLVGMP 271 (347)
T ss_dssp HH-----HHHHHTTSEEEEEEEEECCCC
T ss_pred HH-----HHHHHHHHHhcCCEEEEEeCC
Confidence 21 124567888999999998753
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0067 Score=61.40 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=63.0
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC--C--chhh----hh-----c--CceecCCHHHHHhcCCEEEEe
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL--P--DGIE----KS-----L--GLTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~--~--~~~~----~~-----~--gv~~~~sLdelL~~sDvVil~ 237 (501)
..++|+|||.|.||..+|..+...|+ +|..||+.. . ++.. .. . .+....+ .+.+++||+|+++
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIia 85 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVIT 85 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEEe
Confidence 45789999999999999999999999 999999873 1 1110 00 0 1121223 4678999999998
Q ss_pred ccC--ch-hhh-hcc--c-------HHHHhcCCCCcEEEEcCCCCccCHHH
Q psy7383 238 CTL--NE-HNH-HLI--N-------EFTIKQMRPGAFLVNTARGGLVDDDS 275 (501)
Q Consensus 238 lPl--t~-~T~-~lI--~-------~~~l~~MK~gAilINvaRG~vVde~a 275 (501)
... .+ .|+ .++ | .+.+....+++++|+++-. +|.-.
T Consensus 86 ag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNP--vd~~t 134 (315)
T 3tl2_A 86 AGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNP--VDAMT 134 (315)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS--HHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCCh--HHHHH
Confidence 742 11 111 111 1 1233334689999999853 44433
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0081 Score=63.59 Aligned_cols=71 Identities=18% Similarity=0.034 Sum_probs=50.5
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh---hcCceec-CCH-HHHHhcCCEEEEeccCch
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK---SLGLTRV-YTL-QDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~---~~gv~~~-~sL-delL~~sDvVil~lPlt~ 242 (501)
.+++|++|.|||.|.+|.+.++.|...|++|+++|+........ ..+++.. ..+ ++.+.++|+|+.+ |..+
T Consensus 8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~a-t~~~ 83 (457)
T 1pjq_A 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAA-TDDD 83 (457)
T ss_dssp ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEEC-CSCH
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEc-CCCH
Confidence 46899999999999999999999999999999999876543222 1223221 111 3446788888774 4444
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.015 Score=58.55 Aligned_cols=110 Identities=19% Similarity=0.174 Sum_probs=71.4
Q ss_pred CCeEEeeccchHHHH-HHHHHHhCCCEEEEECCCCCc---hhhhhcCceec--CCHHHHH-hcCCEEEEe--ccC-chhh
Q psy7383 175 GDTLGIVGLGRIGSA-VALRAKAFGFNVIFYDPYLPD---GIEKSLGLTRV--YTLQDLL-FQSDCVSLH--CTL-NEHN 244 (501)
Q Consensus 175 gktVGIVGlG~IG~~-iA~~L~afG~~Vi~~dr~~~~---~~~~~~gv~~~--~sLdelL-~~sDvVil~--lPl-t~~T 244 (501)
.|+|.|||.|.+|.+ +|+.|+..|++|.++|.+... ...++.|++.. .+.+++. .++|+|+.. +|. +++.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~ 83 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV 83 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence 478999999999995 999999999999999986532 12234566533 2445555 579999885 332 3322
Q ss_pred -----hh--cccH-HHHhc--CCC-CcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 245 -----HH--LINE-FTIKQ--MRP-GAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 245 -----~~--lI~~-~~l~~--MK~-gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
++ ++.+ ++|.. ++. ..+-|--+.|+.-...-|...|++..
T Consensus 84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g 134 (326)
T 3eag_A 84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG 134 (326)
T ss_dssp HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 11 3433 34443 333 24555556788777777778887644
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.019 Score=56.95 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=47.0
Q ss_pred CeEEeec-cchHHHHHHHHHHh-CCCEEEE-ECCCCCch----hhh----hcCceecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKA-FGFNVIF-YDPYLPDG----IEK----SLGLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~a-fG~~Vi~-~dr~~~~~----~~~----~~gv~~~~sLdelL~~sDvVil~lP 239 (501)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+..... ... ..++....++++++.++|+|+-+.+
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~ 82 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL 82 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC
Confidence 5799999 99999999998875 4788766 68763211 110 1145555789999999999998765
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0082 Score=60.77 Aligned_cols=89 Identities=21% Similarity=0.165 Sum_probs=64.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhh-hcCceec---CCHH---HHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEK-SLGLTRV---YTLQ---DLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~-~~gv~~~---~sLd---elL~~sDvVil~lPlt~~T~ 245 (501)
.|++|.|+|.|.||...++.++.+|++|++.+++..+ +..+ ++|...+ .+.+ ++....|+|+-++....
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~--- 256 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHH--- 256 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCC---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChH---
Confidence 6889999999999999999999999999999987643 3333 6665432 1222 22335799988775321
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.-...++.++++..+|.++-
T Consensus 257 --~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 257 --ALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp --CSHHHHTTEEEEEEEEECSC
T ss_pred --HHHHHHHHhccCCEEEEeCC
Confidence 12456788899999998875
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.015 Score=58.52 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=68.6
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hh----hhh-----cCceecCCHHHHHhcCCEEEEeccCc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GI----EKS-----LGLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~----~~~-----~gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
.++|+|||.|.+|..++..|...|. +|..+|..... +. ... ..++...+..+.+++||+|+++.+..
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~ 85 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAA 85 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCC
Confidence 4689999999999999999987674 89999976421 10 010 11111123467799999999998643
Q ss_pred hh---hh--------hccc--HHHHhcCCCCcEEEEcCCCCccCH--HHHHHH--HHcCCceEE
Q psy7383 242 EH---NH--------HLIN--EFTIKQMRPGAFLVNTARGGLVDD--DSLAAA--LKQGRIRAA 288 (501)
Q Consensus 242 ~~---T~--------~lI~--~~~l~~MK~gAilINvaRG~vVde--~aL~~a--L~~g~I~GA 288 (501)
.. ++ .++. .+.+....+++++|+++- .+|. ..+.+. +...++.|.
T Consensus 86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pv~~~t~~~~k~~~~p~~rviG~ 147 (317)
T 3d0o_A 86 QKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN--PVDILAYATWKFSGLPKERVIGS 147 (317)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS--SHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC--cHHHHHHHHHHHhCCCHHHEEec
Confidence 21 11 1111 123344478999999863 4444 333333 334467665
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0085 Score=60.53 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=67.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhh----hh----cCceecCCHHHHHhcCCEEEEeccCchh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIE----KS----LGLTRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~----~~----~gv~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
.+|+|||.|.+|..++..|...+. +|..+|..... +.. .. ..++...+..+.+++||+|+++.+....
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~ 85 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK 85 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 689999999999999999987665 89999985321 101 11 1111112345679999999999864321
Q ss_pred ---h--------hhccc--HHHHhcCCCCcEEEEcCCCCccCH--HHHHHH--HHcCCceEE
Q psy7383 244 ---N--------HHLIN--EFTIKQMRPGAFLVNTARGGLVDD--DSLAAA--LKQGRIRAA 288 (501)
Q Consensus 244 ---T--------~~lI~--~~~l~~MK~gAilINvaRG~vVde--~aL~~a--L~~g~I~GA 288 (501)
+ ..++. .+.+....+++++|+++- .+|. ..+.+. +...++.|.
T Consensus 86 ~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~~t~~~~k~s~~p~~rviG~ 145 (318)
T 1ez4_A 86 PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN--PVDILTYATWKFSGFPKERVIGS 145 (318)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS--SHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC--cHHHHHHHHHHHcCCCHHHEEec
Confidence 1 11111 123344579999999844 3544 333333 334467665
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.14 Score=52.71 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=66.9
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC---Cchh-------hhhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL---PDGI-------EKSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~-------~~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
.+.|++|++||= +++.++++..+..||++|.+..|.. +... .+..| +....+++ .++++|||..-+
T Consensus 150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~ 228 (355)
T 4a8p_A 150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV 228 (355)
T ss_dssp CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence 378999999985 6888899999999999999998753 2111 12234 44556899 999999998632
Q ss_pred --cCc------hh----h--hhcccHHHHhcCCCCcEEEEcC
Q psy7383 239 --TLN------EH----N--HHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 239 --Plt------~~----T--~~lI~~~~l~~MK~gAilINva 266 (501)
... .+ . ..-++.+.++.+|++++|.-+.
T Consensus 229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL 270 (355)
T 4a8p_A 229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL 270 (355)
T ss_dssp SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence 100 11 0 1446888888888888888876
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.013 Score=58.84 Aligned_cols=88 Identities=22% Similarity=0.160 Sum_probs=59.4
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CCHHHHHh------cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YTLQDLLF------QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~sLdelL~------~sDvVil~lPlt 241 (501)
.|++|.|+|. |.||..+++.++.+|++|++.+++... +..+++|...+ .++.+.+. ..|+|+.++...
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~ 238 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP 238 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence 5899999998 999999999999999999999986533 34445554322 12222211 467877766521
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.-...++.|+++..+|.++.
T Consensus 239 ------~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 239 ------AFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp ------CHHHHHHTEEEEEEEEEC--
T ss_pred ------HHHHHHHhhcCCCEEEEEEc
Confidence 22466777888888888763
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.082 Score=56.26 Aligned_cols=208 Identities=13% Similarity=0.084 Sum_probs=128.1
Q ss_pred CCCcEEEEcCccccc-cch-hhhhh-cCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhc
Q psy7383 91 KTLRIIVRIGSGVDN-IDV-KAAGE-LGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAA 167 (501)
Q Consensus 91 p~LK~I~~~gaG~D~-ID~-~aa~~-~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~ 167 (501)
|+.-.|++-=.+..+ +.+ +..++ ..|+|.|.. . .-+|--+++-+|+.+|-. |
T Consensus 160 P~fG~InlEDf~ap~af~il~ryr~~~~ipvFnDD-~--qGTA~V~lAgllnAlki~---------g------------- 214 (487)
T 3nv9_A 160 HTFGAINLEDISQPNCYKILDVLRESCDIPVWHDD-Q--QGTASVTLAGLLNALKLV---------K------------- 214 (487)
T ss_dssp GGCSEEEECSCCTTHHHHHHHHHHHHCSSCEEETT-T--HHHHHHHHHHHHHHHHHH---------T-------------
T ss_pred CCCCeecHhhcCCchHHHHHHHHHhhccCCccccc-c--chHHHHHHHHHHHHHHHh---------C-------------
Confidence 444445554444332 222 22333 379999984 3 456777888888887743 1
Q ss_pred cccccccCCeEEeeccchHHHHHHHHHHhCCC---EEEEECCCC----Cc-hhh------------hhcCceecCCHHHH
Q psy7383 168 SGCARIRGDTLGIVGLGRIGSAVALRAKAFGF---NVIFYDPYL----PD-GIE------------KSLGLTRVYTLQDL 227 (501)
Q Consensus 168 ~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~---~Vi~~dr~~----~~-~~~------------~~~gv~~~~sLdel 227 (501)
+.|.+.+|.|.|.|.-|-.+|+.+...|. +|+.+|+.- .. +.. +........+|.|+
T Consensus 215 ---k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~ea 291 (487)
T 3nv9_A 215 ---KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEA 291 (487)
T ss_dssp ---CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHH
T ss_pred ---CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHH
Confidence 24788999999999999999999999998 799999751 11 110 00111123489999
Q ss_pred HhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCC
Q psy7383 228 LFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKD 307 (501)
Q Consensus 228 L~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~ 307 (501)
++.+|+++-+- .. ..++|.++.++.|.+..++.-.|.... |-.-.++.+.|+..- +. -..+.| -+
T Consensus 292 v~~adVlIG~S-~~--~pg~ft~e~V~~Ma~~PIIFaLSNPtp--Ei~pe~A~~~G~aIv-AT---Grsd~P------nQ 356 (487)
T 3nv9_A 292 CVGADVLISLS-TP--GPGVVKAEWIKSMGEKPIVFCCANPVP--EIYPYEAKEAGAYIV-AT---GRGDFP------NQ 356 (487)
T ss_dssp HTTCSEEEECC-CS--SCCCCCHHHHHTSCSSCEEEECCSSSC--SSCHHHHHHTTCSEE-EE---SCTTSS------SB
T ss_pred HhcCCEEEEec-cc--CCCCCCHHHHHhhcCCCEEEECCCCCc--cCCHHHHHHhCCEEE-EE---CCCCCc------cc
Confidence 99999876542 11 148999999999999999999997653 222223334555321 11 111111 15
Q ss_pred CCCeEEecCCCC-----CcHHHHHHHHHHHHHHHHHHHh
Q psy7383 308 APNILCTPHAAF-----YSEASCTELREMAASEIRRAIV 341 (501)
Q Consensus 308 ~pNVilTPHiAg-----~T~ea~~~~~~~~~~ni~~~l~ 341 (501)
.-|+++-|=++- ....-.++|.-.+++.|..+..
T Consensus 357 ~NN~liFPGI~~Gal~~~A~~Itd~M~~AAA~ALA~~v~ 395 (487)
T 3nv9_A 357 VNNSVGFPGILKGALIVRARKITDNMAIAASRALAEFAE 395 (487)
T ss_dssp CCGGGTHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH
T ss_pred CcceeEcchhhHHHHHcCCcccCHHHHHHHHHHHHhhCC
Confidence 568888886541 1111124566666666666654
|
| >1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.17 Score=51.49 Aligned_cols=92 Identities=7% Similarity=-0.034 Sum_probs=64.1
Q ss_pred ccCCeEEe-----eccchHHHHHHHHHHhCCCEEEEECCCCC-chhhhhcCceecCCHHHHHhcCCEEEEeccCc--hh-
Q psy7383 173 IRGDTLGI-----VGLGRIGSAVALRAKAFGFNVIFYDPYLP-DGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLN--EH- 243 (501)
Q Consensus 173 L~gktVGI-----VGlG~IG~~iA~~L~afG~~Vi~~dr~~~-~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt--~~- 243 (501)
+. .+|++ ||=+++.++++..+..||++|.+..|..- .......++....+++|+++++|||..-.=.. .+
T Consensus 167 l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~ 245 (324)
T 1js1_X 167 PK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDN 245 (324)
T ss_dssp CE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTC
T ss_pred ee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCcc
Confidence 67 89999 99999999999999999999999987632 11111135666779999999999998733210 00
Q ss_pred --------hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 244 --------NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 244 --------T~~lI~~~~l~~MK~gAilINva 266 (501)
....++++.++++| +++|.-+.
T Consensus 246 ~~~~~~r~~~y~vt~e~l~~a~-~ai~MHcL 275 (324)
T 1js1_X 246 YGQILSTDRNWTVGDRQMAVTN-NAYFMHCL 275 (324)
T ss_dssp TTCCCCCCTTSSBCHHHHTTSS-SCEEECCS
T ss_pred ccchHHHhcCcccCHHHHHhcC-CcEEECCC
Confidence 12345666666666 66665553
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.072 Score=56.01 Aligned_cols=106 Identities=21% Similarity=0.251 Sum_probs=71.7
Q ss_pred cccCCeEEeeccchHHHHHHHHHHh-CCCEEE-EECCCC--------Cch-h---hhhcC-------ceecCCHHHHHh-
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKA-FGFNVI-FYDPYL--------PDG-I---EKSLG-------LTRVYTLQDLLF- 229 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~a-fG~~Vi-~~dr~~--------~~~-~---~~~~g-------v~~~~sLdelL~- 229 (501)
++.|++|.|.|+|++|+.+|+.|.. .|++|+ +.|.+- +.+ + ....+ .+.+ +.++++.
T Consensus 206 ~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil~~ 284 (415)
T 2tmg_A 206 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLEL 284 (415)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHTTC
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-CchhhhcC
Confidence 6899999999999999999999998 999998 445421 111 0 01111 2222 4567654
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
.||+++-|.. .+.|+.+....++ -.+++-.+-+.+ ..++- +.|.++.|.
T Consensus 285 ~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~-t~~a~-~~l~~~Gi~ 333 (415)
T 2tmg_A 285 DVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPT-TPEAD-EILSRRGIL 333 (415)
T ss_dssp SCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCB-CHHHH-HHHHHTTCE
T ss_pred CCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCccc-CHHHH-HHHHHCCCE
Confidence 8999987753 5678888888884 556777777765 44443 556666665
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0052 Score=63.91 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=43.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCC---CEEEEECCCCCch--hhhhc------Ccee-------cCCHHHHHhc--CCEEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG---FNVIFYDPYLPDG--IEKSL------GLTR-------VYTLQDLLFQ--SDCVS 235 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG---~~Vi~~dr~~~~~--~~~~~------gv~~-------~~sLdelL~~--sDvVi 235 (501)
++|+|+|.|.||+.+++.|...| .+|.++|++.... ..... .+.. ..++++++++ +|+|+
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi 81 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL 81 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence 57999999999999999999888 4999999875321 11111 1111 1235566666 78877
Q ss_pred Eecc
Q psy7383 236 LHCT 239 (501)
Q Consensus 236 l~lP 239 (501)
.+++
T Consensus 82 n~ag 85 (405)
T 4ina_A 82 NIAL 85 (405)
T ss_dssp ECSC
T ss_pred ECCC
Confidence 7766
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.009 Score=60.60 Aligned_cols=112 Identities=15% Similarity=0.075 Sum_probs=67.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhhh--hc------CceecCCHHHHHhcCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIEK--SL------GLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~~--~~------gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
..++|+|||.|.+|..++..|...+. +|..+|..... +... .. .++...+..+.+++||+|+++.+..
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~ 87 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 34789999999999999999977665 89999985321 1111 01 1111123466799999999998643
Q ss_pred hhhhh------------ccc--HHHHhcCCCCcEEEEcCCCCccCHH--HHHHH--HHcCCceEE
Q psy7383 242 EHNHH------------LIN--EFTIKQMRPGAFLVNTARGGLVDDD--SLAAA--LKQGRIRAA 288 (501)
Q Consensus 242 ~~T~~------------lI~--~~~l~~MK~gAilINvaRG~vVde~--aL~~a--L~~g~I~GA 288 (501)
. ..+ ++. .+.+....+++++|+++- .+|.- .+.+. +...++.|.
T Consensus 88 ~-k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~~t~~~~k~s~~p~~rviG~ 149 (326)
T 2zqz_A 88 Q-KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN--PVDILTYATWKLSGFPKNRVVGS 149 (326)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHHHHHHHHHHHCCCGGGEEEC
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC--cHHHHHHHHHHHcCCCHHHEEEc
Confidence 2 111 110 122333468999999844 45443 33333 334466665
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.018 Score=56.60 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=33.9
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
++.||++.|+| .|.||+++++.|...|++|++++|+.
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~ 153 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 153 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence 36789999999 99999999999999999999999864
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.027 Score=51.91 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=57.5
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhh-hhcCceec-CCH----HHHHhcCCEEEEeccCc--hh--h
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIE-KSLGLTRV-YTL----QDLLFQSDCVSLHCTLN--EH--N 244 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~-~~~gv~~~-~sL----delL~~sDvVil~lPlt--~~--T 244 (501)
++|.|.|. |.||+.+++.|...|++|++++|+...... ...+++.+ .++ .+.+.++|+|+.+.... +. .
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~ 80 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGY 80 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhh
Confidence 46889987 999999999999999999999987532111 11233221 122 16788999998887542 10 0
Q ss_pred hhc-ccHHHHhcCCC-CcEEEEcCCC
Q psy7383 245 HHL-INEFTIKQMRP-GAFLVNTARG 268 (501)
Q Consensus 245 ~~l-I~~~~l~~MK~-gAilINvaRG 268 (501)
.++ ....+++.|+. +..||+++..
T Consensus 81 ~n~~~~~~l~~a~~~~~~~~v~~SS~ 106 (224)
T 3h2s_A 81 LHLDFATHLVSLLRNSDTLAVFILGS 106 (224)
T ss_dssp HHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 111 12345555542 3567777653
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.027 Score=56.61 Aligned_cols=98 Identities=21% Similarity=0.271 Sum_probs=62.6
Q ss_pred CeEEeecc-chHHHHHHHHHHhCC--CEEEEECCCCCchhhhhc--C-----ceec---CCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFG--FNVIFYDPYLPDGIEKSL--G-----LTRV---YTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG--~~Vi~~dr~~~~~~~~~~--g-----v~~~---~sLdelL~~sDvVil~lPlt~ 242 (501)
++|+|+|. |.+|+.++..|...| .+|..+|..........+ . +... .++++.+++||+|+++.....
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~ 80 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence 47999998 999999999998777 689999986522211111 1 2221 357888999999999875321
Q ss_pred ---hhh-hcc--c-------HHHHhcCCCCcEEEEcCCCCccCHHH
Q psy7383 243 ---HNH-HLI--N-------EFTIKQMRPGAFLVNTARGGLVDDDS 275 (501)
Q Consensus 243 ---~T~-~lI--~-------~~~l~~MK~gAilINvaRG~vVde~a 275 (501)
+++ .++ | .+.+....++++||+++- .+|.-.
T Consensus 81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN--Pv~~~~ 124 (314)
T 1mld_A 81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNSTI 124 (314)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC--CcchhH
Confidence 111 110 1 122333358899999844 466654
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0064 Score=58.19 Aligned_cols=64 Identities=25% Similarity=0.198 Sum_probs=44.1
Q ss_pred CeEEeeccchHHHHHHHH--HHhCCCEEEE-ECCCCCchhhhhcC--ceecCCHHHHHh-cCCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALR--AKAFGFNVIF-YDPYLPDGIEKSLG--LTRVYTLQDLLF-QSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~--L~afG~~Vi~-~dr~~~~~~~~~~g--v~~~~sLdelL~-~sDvVil~lPl 240 (501)
++|+|||+|.+|+.+++. ... |+++.+ +|......-....+ +....+++++++ +.|+|++++|.
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps 150 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR 150 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCc
Confidence 579999999999999995 334 888654 56554322111122 333567888886 58999999984
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.011 Score=59.33 Aligned_cols=89 Identities=11% Similarity=0.048 Sum_probs=59.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhC--CCEEEEECCCCCc-hhhhhcCceecCCHH---HH---Hh---cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAF--GFNVIFYDPYLPD-GIEKSLGLTRVYTLQ---DL---LF---QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~af--G~~Vi~~dr~~~~-~~~~~~gv~~~~sLd---el---L~---~sDvVil~lPlt 241 (501)
.|++|.|+|.|.||..+++.++.+ |++|++.+++..+ +..+++|...+.+.. +. +. ..|+|+-++...
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~ 249 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE 249 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence 688999999999999999999999 9999999976432 344556654332221 11 11 467777766421
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
++ -...++.|+++..+|.++.
T Consensus 250 -~~----~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 250 -ET----TYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp -HH----HHHHHHHEEEEEEEEECCC
T ss_pred -HH----HHHHHHHhhcCCEEEEeCC
Confidence 11 1445667777777777754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.011 Score=59.21 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=62.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-----CCHHHHHh----cCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-----YTLQDLLF----QSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-----~sLdelL~----~sDvVil~lPlt~~ 243 (501)
.|++|.|+|.|.||...++.++.+|++|++.+++..+ +..+++|...+ .++.+.+. ..|+|+.++... +
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~-~ 244 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSP-K 244 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCH-H
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCH-H
Confidence 5789999999999999999999999999999876532 44556665432 12323222 578887765422 1
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+ -...++.++++..+|.++-
T Consensus 245 ~----~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 245 A----FSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp H----HHHHHHHEEEEEEEEECSC
T ss_pred H----HHHHHHHhccCCEEEEeCC
Confidence 1 2456778888888888864
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.018 Score=57.24 Aligned_cols=35 Identities=20% Similarity=0.032 Sum_probs=31.0
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
..++|.|.|. |.||+.+++.|...|++|++++|..
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4578999997 9999999999999999999999875
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.013 Score=58.28 Aligned_cols=88 Identities=20% Similarity=0.166 Sum_probs=59.7
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec------CCHHHHHh-----cCCEEEEeccC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV------YTLQDLLF-----QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~------~sLdelL~-----~sDvVil~lPl 240 (501)
.|++|.|+|. |.||+.+++.++.+|++|++.+++... +..+++|...+ .++.+.+. ..|+|+.++..
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 224 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG 224 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence 5889999998 999999999999999999999876422 22234443211 23333332 36877776542
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.+ -...++.|+++..+|.++-
T Consensus 225 --~~----~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 225 --EF----LNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp --HH----HHHHHTTEEEEEEEEECCC
T ss_pred --HH----HHHHHHHHhcCCEEEEEec
Confidence 11 2566777888888888764
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.011 Score=59.54 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=47.2
Q ss_pred CeEEeeccchHHHHHHHHHHhC--------CCEE-EEECCCCCc--hhhhhcCce-ecCCHHHHHh--cCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--------GFNV-IFYDPYLPD--GIEKSLGLT-RVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--------G~~V-i~~dr~~~~--~~~~~~gv~-~~~sLdelL~--~sDvVil~lPlt 241 (501)
.+|||||+|.||+.-++.++.. +++| .++|++... ...+.+++. .+.+++++|+ +.|+|++++|..
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~ 86 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD 86 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence 4799999999999888777543 2354 467876532 334456654 4568999996 479999999854
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.029 Score=57.10 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=47.9
Q ss_pred CeEEeec-cchHHHH-HH----HHHHhCC-CEE----------EEECCCCCc--hhhhhcCce-ecCCHHHHHhc--CCE
Q psy7383 176 DTLGIVG-LGRIGSA-VA----LRAKAFG-FNV----------IFYDPYLPD--GIEKSLGLT-RVYTLQDLLFQ--SDC 233 (501)
Q Consensus 176 ktVGIVG-lG~IG~~-iA----~~L~afG-~~V----------i~~dr~~~~--~~~~~~gv~-~~~sLdelL~~--sDv 233 (501)
.+||||| +|.||+. .+ +.++..+ ..+ .++|+.... ...+..++. .+.++++++++ .|+
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~ 86 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM 86 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence 4799999 9999997 66 6665543 332 488887643 334556774 45799999976 899
Q ss_pred EEEeccCc
Q psy7383 234 VSLHCTLN 241 (501)
Q Consensus 234 Vil~lPlt 241 (501)
|++++|..
T Consensus 87 V~i~tp~~ 94 (383)
T 3oqb_A 87 FFDAATTQ 94 (383)
T ss_dssp EEECSCSS
T ss_pred EEECCCch
Confidence 99999853
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.028 Score=57.59 Aligned_cols=92 Identities=21% Similarity=0.281 Sum_probs=63.0
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCC-------------------ch-hh----hhc--Cc--eec
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLP-------------------DG-IE----KSL--GL--TRV 221 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~-------------------~~-~~----~~~--gv--~~~ 221 (501)
..|++++|.|||+|.+|..+|+.|...|. ++.++|...- +. .. +.. .+ +..
T Consensus 30 ~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~ 109 (340)
T 3rui_A 30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 109 (340)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEE
Confidence 45899999999999999999999999997 6778875320 00 00 000 11 111
Q ss_pred C---------------------CHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 222 Y---------------------TLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 222 ~---------------------sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
. .++++++++|+|+.++ .+.+++.+++....+. +..+|+.+
T Consensus 110 ~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~t-Dn~~tR~lin~~c~~~---~~plI~aa 171 (340)
T 3rui_A 110 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLV-DSRESRWLPSLLSNIE---NKTVINAA 171 (340)
T ss_dssp CCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECC-SSTGGGHHHHHHHHHT---TCEEEEEE
T ss_pred eccccccCcccchhhhhcCCHHHHHhhhccCCEEEecC-CCHHHHHHHHHHHHHc---CCcEEEee
Confidence 1 2457789999998875 5778898888765543 45677764
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.015 Score=57.07 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=32.1
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.+++|.|.|. |.||+.+++.|...|++|++.+|...
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~ 38 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG 38 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence 5789999987 99999999999999999999998754
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0059 Score=63.11 Aligned_cols=108 Identities=10% Similarity=0.053 Sum_probs=68.9
Q ss_pred CCeEEeeccchHHHHHHHHHHhC--CCEEE-EECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchh--hhhc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAF--GFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEH--NHHL 247 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~af--G~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~--T~~l 247 (501)
-.||+|||+| +|+.-++.++.. ++++. ++|+.... ..++.+|+..+.++++++.+.|+|++++|..-. ...-
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~~ 85 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGTQ 85 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHHH
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHHH
Confidence 3589999999 799888877665 67765 57877643 455678888778999999999999999984311 0011
Q ss_pred ccHHHHhcCCCCc-EEEEcCCCCccCHHHHHHHHHcCCceE
Q psy7383 248 INEFTIKQMRPGA-FLVNTARGGLVDDDSLAAALKQGRIRA 287 (501)
Q Consensus 248 I~~~~l~~MK~gA-ilINvaRG~vVde~aL~~aL~~g~I~G 287 (501)
+-. +.|+.|. +|+.- --.+-+.++|+++.++..+.-
T Consensus 86 ~a~---~al~aGkhVl~EK-Pl~~~ea~~l~~~A~~~g~~~ 122 (372)
T 4gmf_A 86 LAR---HFLARGVHVIQEH-PLHPDDISSLQTLAQEQGCCY 122 (372)
T ss_dssp HHH---HHHHTTCEEEEES-CCCHHHHHHHHHHHHHHTCCE
T ss_pred HHH---HHHHcCCcEEEec-CCCHHHHHHHHHHHHHcCCEE
Confidence 122 2233332 33321 112345567788777777653
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.014 Score=59.50 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=63.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceec-----CCHHHHHh--------cCCEEEEec
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRV-----YTLQDLLF--------QSDCVSLHC 238 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~-----~sLdelL~--------~sDvVil~l 238 (501)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++..+ +..+++|+..+ .++.+.+. ..|+|+-++
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~ 261 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA 261 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence 57899999999999999999999999 89999876532 44556666432 13334333 378888776
Q ss_pred cCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 239 TLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 239 Plt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.. +++ -...++.++++..+|.++-
T Consensus 262 G~-~~~----~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 262 GV-AET----VKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp CC-HHH----HHHHHHHEEEEEEEEECSC
T ss_pred CC-HHH----HHHHHHHhccCCEEEEEec
Confidence 42 111 2456778888988888874
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.03 Score=57.18 Aligned_cols=87 Identities=18% Similarity=0.139 Sum_probs=54.2
Q ss_pred CeEEeec-cchHHHHHHHHHHhCC-CEEEEECCCCCch--hhhh----cC--ceecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFG-FNVIFYDPYLPDG--IEKS----LG--LTRVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG-~~Vi~~dr~~~~~--~~~~----~g--v~~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
.+|+|+| +|.||+.+.+.|.... +++.+.......+ .... .+ -..+.++++ +.++|+|++|+|.... +
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s-~ 82 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF-A 82 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-H
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-H
Confidence 4799999 8999999999998765 4777665432221 1110 01 011224444 4789999999985532 2
Q ss_pred hcccHHHHhcCCCCcEEEEcCCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG 268 (501)
.+. . ..++.|..+|+.+--
T Consensus 83 ~~a-~---~~~~aG~~VId~Sa~ 101 (345)
T 2ozp_A 83 REF-D---RYSALAPVLVDLSAD 101 (345)
T ss_dssp HTH-H---HHHTTCSEEEECSST
T ss_pred HHH-H---HHHHCCCEEEEcCcc
Confidence 222 1 223678889998763
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.024 Score=57.62 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=69.3
Q ss_pred eEEeeccchHHHHHHHHHHh---------CCCEEEE-ECCCCCch--------hhhhc-CceecC--CHHHHHh--cCCE
Q psy7383 177 TLGIVGLGRIGSAVALRAKA---------FGFNVIF-YDPYLPDG--------IEKSL-GLTRVY--TLQDLLF--QSDC 233 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~a---------fG~~Vi~-~dr~~~~~--------~~~~~-gv~~~~--sLdelL~--~sDv 233 (501)
+|||||+|.||+.+++.+.. .+.+|.+ +|++.... ..... ...... ++++++. +.|+
T Consensus 4 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDv 83 (327)
T 3do5_A 4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDV 83 (327)
T ss_dssp EEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCSE
T ss_pred EEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCCE
Confidence 79999999999999999976 4677654 56553210 01111 112222 8999986 5899
Q ss_pred EEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHcCCce
Q psy7383 234 VSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLV-DDDSLAAALKQGRIR 286 (501)
Q Consensus 234 Vil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vV-de~aL~~aL~~g~I~ 286 (501)
|+.++|....+.. .-+-....|+.|.-+|...-..+. +-+.|.++.++....
T Consensus 84 Vv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~ 136 (327)
T 3do5_A 84 LIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR 136 (327)
T ss_dssp EEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence 9999985432111 123345667888888777554443 567888888877764
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.086 Score=55.54 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=72.3
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEE-EECCCC--------Cch-hh---hhcC------ceecCCHHHHH-hcC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVI-FYDPYL--------PDG-IE---KSLG------LTRVYTLQDLL-FQS 231 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi-~~dr~~--------~~~-~~---~~~g------v~~~~sLdelL-~~s 231 (501)
+++|+||.|-|+|++|+.+|+.|..+|++|+ +.|.+- +.+ +. ...+ .+.+ +-++++ .+|
T Consensus 218 ~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~-~~~~i~~~~~ 296 (424)
T 3k92_A 218 KLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVI-TNEELLEKDC 296 (424)
T ss_dssp CGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCB-CHHHHHHSCC
T ss_pred CcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEe-cCccceeccc
Confidence 5899999999999999999999999999986 445431 111 11 1111 2222 456655 479
Q ss_pred CEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 232 DvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
||++-|. +.+.|+.+....++ -.+++-.+-+.+ ..+ -.+.|.++.|.
T Consensus 297 DIliPcA-----~~n~I~~~~a~~l~-ak~V~EgAN~p~-t~e-A~~iL~~rGI~ 343 (424)
T 3k92_A 297 DILVPAA-----ISNQITAKNAHNIQ-ASIVVERANGPT-TID-ATKILNERGVL 343 (424)
T ss_dssp SEEEECS-----CSSCBCTTTGGGCC-CSEEECCSSSCB-CHH-HHHHHHHTTCE
T ss_pred cEEeecC-----cccccChhhHhhcC-ceEEEcCCCCCC-CHH-HHHHHHHCCCE
Confidence 9997664 35788888888874 557777778875 433 35677777775
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.012 Score=59.03 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=33.6
Q ss_pred cccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC
Q psy7383 170 CARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL 208 (501)
Q Consensus 170 ~~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~ 208 (501)
...|++++|.|||+|.+|..+|+.|...|. ++.++|...
T Consensus 31 q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 31 YEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp -CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 457999999999999999999999998886 788888643
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.02 Score=57.33 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=61.2
Q ss_pred cCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-----CCHHH-HH-----hcCCEEEEeccC
Q psy7383 174 RGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-----YTLQD-LL-----FQSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-----~sLde-lL-----~~sDvVil~lPl 240 (501)
.|++|.|+|.| .||..+++.++.+|++|++.+++... +..+++|...+ .++.+ +. ...|+|+.++..
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~ 223 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG 223 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence 58899999998 99999999999999999999977543 44455565422 12222 22 147888776642
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+.+ .+.+..++++..+|.++-
T Consensus 224 -~~~-----~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 224 -PDG-----NELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp -HHH-----HHHHHTEEEEEEEEECCC
T ss_pred -hhH-----HHHHHHhcCCCEEEEEee
Confidence 221 234577888888888874
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.019 Score=58.71 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=52.6
Q ss_pred CeEEeec-cchHHHHHHHHHHhCC-CEEEEEC--CCCC-chhhhh---------------cCceecCCHHHHHh-cCCEE
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFG-FNVIFYD--PYLP-DGIEKS---------------LGLTRVYTLQDLLF-QSDCV 234 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG-~~Vi~~d--r~~~-~~~~~~---------------~gv~~~~sLdelL~-~sDvV 234 (501)
.+|+|+| +|.||+.+++.|.... ++|.++. +... ...... ..+.. .+++++++ ++|+|
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~DvV 87 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIP-TDPKHEEFEDVDIV 87 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEE-SCTTSGGGTTCCEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEe-CCHHHHhcCCCCEE
Confidence 4799999 9999999999997664 6776663 3221 111111 11111 14556667 89999
Q ss_pred EEeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 235 il~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
++++|... +..+. ... ++.|..+|+.+-
T Consensus 88 ~~atp~~~-~~~~a-~~~---~~aG~~VId~s~ 115 (354)
T 1ys4_A 88 FSALPSDL-AKKFE-PEF---AKEGKLIFSNAS 115 (354)
T ss_dssp EECCCHHH-HHHHH-HHH---HHTTCEEEECCS
T ss_pred EECCCchH-HHHHH-HHH---HHCCCEEEECCc
Confidence 99998432 22221 222 346788888864
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.024 Score=58.12 Aligned_cols=102 Identities=25% Similarity=0.373 Sum_probs=63.4
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCC--EEEEECCCCCc--h----hhhh----cCceecCCHHHHHhcCCEEEEecc
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGF--NVIFYDPYLPD--G----IEKS----LGLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~--~Vi~~dr~~~~--~----~~~~----~gv~~~~sLdelL~~sDvVil~lP 239 (501)
+.+++|+|||. |.+|+.+|..+..+|. +|..+|..... + +... ..+....++.+.+++||+|+++.-
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 56789999998 9999999999888884 89999975421 1 1111 122333567888999999999853
Q ss_pred Cchhhhhc-----c--c-------HHHHhcCCCCcE-EEEcCCCCccCHHHHH
Q psy7383 240 LNEHNHHL-----I--N-------EFTIKQMRPGAF-LVNTARGGLVDDDSLA 277 (501)
Q Consensus 240 lt~~T~~l-----I--~-------~~~l~~MK~gAi-lINvaRG~vVde~aL~ 277 (501)
+++..++ + | .+.+....++++ +|+++- .+|.-..+
T Consensus 86 -~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN--Pvd~~t~i 135 (343)
T 3fi9_A 86 -APRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN--PADITGLV 135 (343)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS--SHHHHHHH
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC--chHHHHHH
Confidence 2221111 1 1 122333457774 888864 46554443
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.027 Score=54.91 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=46.4
Q ss_pred CCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhh-----hcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-----SLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-----~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
.++|.|.| .|.||+.+++.|...|++|++.+|........ ...+. ..+++++++++|+|+.+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence 37899998 79999999999999999999999873221100 11122 23466778899999877654
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.019 Score=57.96 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=61.1
Q ss_pred CCeEEeec-cchHHHHHHHHHHhCC--CEEEEECCCCCchhh---hhc----Ccee---cCCHHHHHhcCCEEEEeccCc
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAFG--FNVIFYDPYLPDGIE---KSL----GLTR---VYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~afG--~~Vi~~dr~~~~~~~---~~~----gv~~---~~sLdelL~~sDvVil~lPlt 241 (501)
.++|+|+| .|.+|+.++..|...| .+|..+|........ ... .+.. ..++++.++++|+|+++....
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~ 87 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 87 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence 36899999 8999999999998888 789999975432111 111 1111 124678899999999998632
Q ss_pred hh---hhh-c--cc----H---HHHhcCCCCcEEEEcCCCCccCH
Q psy7383 242 EH---NHH-L--IN----E---FTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 242 ~~---T~~-l--I~----~---~~l~~MK~gAilINvaRG~vVde 273 (501)
.. ++. + .| . +.+....+.+++++.+ ..+|.
T Consensus 88 ~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~ 130 (326)
T 1smk_A 88 RKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS 130 (326)
T ss_dssp CCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence 21 100 0 11 1 2223335788999975 44665
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.037 Score=54.12 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=45.7
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC-chh-h---hhcCceec-------CCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP-DGI-E---KSLGLTRV-------YTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~-~~~-~---~~~gv~~~-------~sLdelL~~sDvVil~lP 239 (501)
++|.|+| .|.||+.+++.|...|++|++.+|... ... . ...+++.+ .++.++++++|+|+.+..
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 5899999 599999999999999999999998764 211 0 12333321 235567788888877665
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.019 Score=57.32 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=60.2
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-----CCHHHHH------hcCCEEEEeccC
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-----YTLQDLL------FQSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-----~sLdelL------~~sDvVil~lPl 240 (501)
.|++|.|+| .|.||..+++.++.+|++|++.+++..+ +..+++|...+ .++.+.+ ...|+|+.++..
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~ 227 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK 227 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCCh
Confidence 588999999 8999999999999999999999986432 34445554322 1222221 136777776642
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+ .-...++.|+++..+|.++.
T Consensus 228 --~----~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 228 --D----TFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp --G----GHHHHHHHEEEEEEEEECCC
T ss_pred --H----HHHHHHHHhccCCEEEEEcC
Confidence 1 12456777888888888764
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.021 Score=55.35 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=30.7
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+++|.|.|. |.||+.+++.|...|++|++.+|..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 478999995 9999999999999999999999875
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.037 Score=54.27 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=34.4
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.++.||++.|.|- |.||+++|+.|...|++|++.+++..
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~ 82 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE 82 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4589999999975 78999999999999999999988753
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.016 Score=58.46 Aligned_cols=88 Identities=20% Similarity=0.144 Sum_probs=61.7
Q ss_pred cCCeEEee-ccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-----CCHHHHHh-----cCCEEEEeccCc
Q psy7383 174 RGDTLGIV-GLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-----YTLQDLLF-----QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIV-GlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-----~sLdelL~-----~sDvVil~lPlt 241 (501)
.|++|.|+ |.|.||..+++.++..|++|++.+++..+ +..+++|...+ .++.+.+. ..|+|+.++...
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~ 246 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA 246 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH
Confidence 58899999 78999999999999999999999976532 33444554322 12333222 478888776521
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.-...++.|+++..+|.++.
T Consensus 247 ------~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 247 ------YFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp ------GHHHHHHTEEEEEEEEECCC
T ss_pred ------HHHHHHHHhccCCEEEEEEe
Confidence 22556788888888888864
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.037 Score=57.70 Aligned_cols=64 Identities=25% Similarity=0.367 Sum_probs=45.7
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcC---ceecC---CHHHHHhcCCEEEE
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLG---LTRVY---TLQDLLFQSDCVSL 236 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~g---v~~~~---sLdelL~~sDvVil 236 (501)
+.++||+|||-|.+|+.+++.++.+|++|+++|+........... ..... .+.+++.++|+|+.
T Consensus 33 ~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~ 102 (419)
T 4e4t_A 33 LPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST 102 (419)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence 579999999999999999999999999999999765432111111 01111 24455678898874
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.022 Score=53.30 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=49.4
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCC--EEEEECCCCCchhh-hhcCce-------ecCCHHHHHhcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGF--NVIFYDPYLPDGIE-KSLGLT-------RVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~--~Vi~~dr~~~~~~~-~~~gv~-------~~~sLdelL~~sDvVil~lPlt 241 (501)
+.+|+|.|.| .|.||+.+++.|...|+ +|++++|+...... ...++. ...+++++++..|+|+.+....
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~ 95 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT 95 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence 5688999998 79999999999999999 99999987542110 011111 1124556788899998887643
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.02 Score=56.58 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=49.3
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchh--hhh-cCcee-------cCCHHHHHh--cCCEEEEe
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGI--EKS-LGLTR-------VYTLQDLLF--QSDCVSLH 237 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~--~~~-~gv~~-------~~sLdelL~--~sDvVil~ 237 (501)
..+.+++|.|.|. |.||+.+++.|...|++|++.+|...... ... .++.. ..++++++. ..|+|+.+
T Consensus 16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~ 95 (330)
T 2pzm_A 16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS 95 (330)
T ss_dssp STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence 4589999999987 99999999999999999999998643211 011 11111 113456677 88998877
Q ss_pred ccC
Q psy7383 238 CTL 240 (501)
Q Consensus 238 lPl 240 (501)
...
T Consensus 96 A~~ 98 (330)
T 2pzm_A 96 AAA 98 (330)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.035 Score=53.11 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=33.0
Q ss_pred cccCCeEEeecc-ch--HHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GR--IGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~--IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
++.||++.|.|. |. ||+++|+.|...|++|++.++..
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 43 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE 43 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence 478999999997 45 99999999999999999998764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.014 Score=58.27 Aligned_cols=89 Identities=20% Similarity=0.125 Sum_probs=61.9
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hhh-hhcCceec-----CCHHHHHh-----cCCEEEEeccC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GIE-KSLGLTRV-----YTLQDLLF-----QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~-~~~gv~~~-----~sLdelL~-----~sDvVil~lPl 240 (501)
.|++|.|+|. |.||+.+++.++.+|++|++.+++... +.. +++|...+ .++.+.+. ..|+|+.++..
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 228 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG 228 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence 5889999999 999999999999999999999976532 233 45555322 12222222 37888776541
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+ .-...++.|+++..+|.++..
T Consensus 229 --~----~~~~~~~~l~~~G~iv~~G~~ 250 (336)
T 4b7c_A 229 --E----ILDTVLTRIAFKARIVLCGAI 250 (336)
T ss_dssp --H----HHHHHHTTEEEEEEEEECCCG
T ss_pred --c----hHHHHHHHHhhCCEEEEEeec
Confidence 1 225677888888888888653
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.013 Score=58.81 Aligned_cols=95 Identities=20% Similarity=0.258 Sum_probs=59.4
Q ss_pred eEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchh------hhh---c--C--ceecCCHHHHHhcCCEEEEeccCch
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGI------EKS---L--G--LTRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~------~~~---~--g--v~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
+|+|||.|.||..+|..+...|+ +|..+|....... ... . . +....+. +.+++||+|+++.+...
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~ 79 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR 79 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence 58999999999999999876676 7999998753210 110 0 1 2222354 67999999999965432
Q ss_pred -----------hhhhccc--HHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 243 -----------HNHHLIN--EFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 243 -----------~T~~lI~--~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
.+..++- .+.+....+++++|+++- .+|.-
T Consensus 80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~~ 122 (308)
T 2d4a_B 80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN--PVDAM 122 (308)
T ss_dssp CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC--chHHH
Confidence 1111111 122333358999999854 45443
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.023 Score=57.63 Aligned_cols=65 Identities=26% Similarity=0.230 Sum_probs=45.4
Q ss_pred eEEeeccchHHHHHHHHHHhC-CCEEEE-ECCCCCc--hhhhhcCc------------------eecCCHHHHHhcCCEE
Q psy7383 177 TLGIVGLGRIGSAVALRAKAF-GFNVIF-YDPYLPD--GIEKSLGL------------------TRVYTLQDLLFQSDCV 234 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~af-G~~Vi~-~dr~~~~--~~~~~~gv------------------~~~~sLdelL~~sDvV 234 (501)
+|||+|+|.||+.+++.+... +++|.+ +|+.... ...+..|+ ....+.++++.++|+|
T Consensus 4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV 83 (334)
T 2czc_A 4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII 83 (334)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEE
Confidence 799999999999999999875 567654 5554321 11222221 2224788888899999
Q ss_pred EEeccCc
Q psy7383 235 SLHCTLN 241 (501)
Q Consensus 235 il~lPlt 241 (501)
+.++|..
T Consensus 84 ~~aTp~~ 90 (334)
T 2czc_A 84 VDATPGG 90 (334)
T ss_dssp EECCSTT
T ss_pred EECCCcc
Confidence 9999854
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.03 Score=55.13 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=34.6
Q ss_pred ccccCCeEEeeccc---hHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVGLG---RIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVGlG---~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
..+.||++.|.|.+ .||+++|+.|...|++|++.+++.
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~ 66 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE 66 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence 45899999999986 899999999999999999999874
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.014 Score=59.15 Aligned_cols=88 Identities=17% Similarity=0.096 Sum_probs=61.2
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-----CCHHHHHh-----cCCEEEEeccCc
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-----YTLQDLLF-----QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-----~sLdelL~-----~sDvVil~lPlt 241 (501)
.|++|.|+| .|.||..+++.++.+|++|++.+++... +..+++|...+ .++.+.+. ..|+|+.++..
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~- 241 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG- 241 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence 578999999 7999999999999999999999976432 33445554422 13333332 36888877652
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. .-...++.|+++..+|.++.
T Consensus 242 -~----~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 242 -A----MFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp -H----HHHHHHHHEEEEEEEEECCC
T ss_pred -H----HHHHHHHHHhcCCEEEEEeC
Confidence 1 12456777888888888765
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.042 Score=55.46 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=59.0
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC-------EEEEECCC----CC--ch----hhhh-c----CceecCCHHHHHhcCC
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF-------NVIFYDPY----LP--DG----IEKS-L----GLTRVYTLQDLLFQSD 232 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~-------~Vi~~dr~----~~--~~----~~~~-~----gv~~~~sLdelL~~sD 232 (501)
++|.|+|. |.||+.++..|...|+ +|..+|+. .. .. +... . .+....++.+.+++||
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~aD 85 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDAD 85 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCCC
Confidence 58999997 9999999999988775 89999986 21 01 1110 0 1222257788999999
Q ss_pred EEEEeccCch---hhhh-c--cc-------HHHHhcC-CCCcEEEEcCC
Q psy7383 233 CVSLHCTLNE---HNHH-L--IN-------EFTIKQM-RPGAFLVNTAR 267 (501)
Q Consensus 233 vVil~lPlt~---~T~~-l--I~-------~~~l~~M-K~gAilINvaR 267 (501)
+|+++..... .++. + .| .+.+... ++.++||+++-
T Consensus 86 ~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 86 VALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 9998765321 1110 1 01 1233333 47899999983
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.017 Score=58.67 Aligned_cols=89 Identities=16% Similarity=0.076 Sum_probs=60.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceec-----CCHHHHHh-----cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRV-----YTLQDLLF-----QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~-----~sLdelL~-----~sDvVil~lPlt 241 (501)
.|++|.|+|.|.||..+++.++.+|+ +|++.+++... +..+++|...+ .++.+.+. ..|+|+-++...
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~ 269 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP 269 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence 57899999999999999999999999 79999876432 34455565422 12222222 368887776421
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
++ -...++.++++..+|.++-
T Consensus 270 -~~----~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 270 -EI----LKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp -HH----HHHHHHTEEEEEEEEECCC
T ss_pred -HH----HHHHHHHHhcCCEEEEeCC
Confidence 11 1456777888888888764
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.046 Score=55.50 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=64.2
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceec-----CCHHHHH---hcCCEEEEeccCchhh
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV-----YTLQDLL---FQSDCVSLHCTLNEHN 244 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~-----~sLdelL---~~sDvVil~lPlt~~T 244 (501)
.|++|.|+| .|.||+.+++.++.+|++|++.+.....+..+++|...+ .++.+.+ ...|+|+-++.....+
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~ 262 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTET 262 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhhh
Confidence 589999999 799999999999999999998874333344556665432 1233323 2589999887533111
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG 268 (501)
-...++.++++..+|.++..
T Consensus 263 ----~~~~~~~l~~~G~iv~~g~~ 282 (375)
T 2vn8_A 263 ----WAPDFLKKWSGATYVTLVTP 282 (375)
T ss_dssp ----HGGGGBCSSSCCEEEESCCS
T ss_pred ----hHHHHHhhcCCcEEEEeCCC
Confidence 13456788999999999864
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.014 Score=59.08 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=60.1
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchh---hhh-cCcee-----c---CCHHHHHhcCCEEEEeccC
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGI---EKS-LGLTR-----V---YTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~---~~~-~gv~~-----~---~sLdelL~~sDvVil~lPl 240 (501)
.+++|.|.| .|.||+.+++.|...|++|++.+|...... ... .+++. + .+++++++++|+|+.++..
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 367899998 599999999999999999999998764321 111 12211 1 1355678899999876653
Q ss_pred chhhhhcccHHHHhcCCC-C--cEEEEcCCCC
Q psy7383 241 NEHNHHLINEFTIKQMRP-G--AFLVNTARGG 269 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~-g--AilINvaRG~ 269 (501)
.....+......++.++. + ..||++|...
T Consensus 84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~ 115 (352)
T 1xgk_A 84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD 115 (352)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence 211112222334444432 2 4788887754
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.013 Score=58.70 Aligned_cols=87 Identities=8% Similarity=0.034 Sum_probs=60.0
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~~ 246 (501)
.+++.|+|+|.+|+.+++.|...|. |++.|+....-..+..++..+ .+ |+++ ++++|.|+++++.. ..+
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d--~~n 191 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESD--SET 191 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSH--HHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCcc--HHH
Confidence 5689999999999999999999999 999998754321233444322 12 3333 67889999988743 455
Q ss_pred cccHHHHhcCCCCcEEEE
Q psy7383 247 LINEFTIKQMRPGAFLVN 264 (501)
Q Consensus 247 lI~~~~l~~MK~gAilIN 264 (501)
++-...++.+.+...+|-
T Consensus 192 ~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 192 IHCILGIRKIDESVRIIA 209 (336)
T ss_dssp HHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHCCCCeEEE
Confidence 555667777877754443
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=95.21 E-value=0.02 Score=58.38 Aligned_cols=99 Identities=16% Similarity=0.257 Sum_probs=63.3
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--h----hhhh--c----CceecCCHHHHHhcCCEEEEe
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--G----IEKS--L----GLTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~----~~~~--~----gv~~~~sLdelL~~sDvVil~ 237 (501)
....++|+|||.|.||..+|..+...|. +|..+|..... + +... + .+....+.+ .+++||+|+++
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~ 94 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT 94 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence 3567899999999999999999987777 89999986421 1 1100 1 011123454 59999999998
Q ss_pred ccCch---hhhh-cc--c-------HHHHhcCCCCcEEEEcCCCCccCH
Q psy7383 238 CTLNE---HNHH-LI--N-------EFTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 238 lPlt~---~T~~-lI--~-------~~~l~~MK~gAilINvaRG~vVde 273 (501)
.-... +||. ++ | .+.+....|++++|+++-. +|.
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNP--vdi 141 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP--VDI 141 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS--HHH
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh--HHH
Confidence 64211 1221 22 1 1234445789999999853 553
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.022 Score=60.44 Aligned_cols=113 Identities=13% Similarity=0.107 Sum_probs=70.6
Q ss_pred CeEEeeccchH-HHHHHHHHHh----C-CCEEEEECCCC--Cch-----hhh----hcC----ceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRI-GSAVALRAKA----F-GFNVIFYDPYL--PDG-----IEK----SLG----LTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~I-G~~iA~~L~a----f-G~~Vi~~dr~~--~~~-----~~~----~~g----v~~~~sLdelL~~sDvV 234 (501)
.+|+|||.|.. |..++..|.. + +.+|..||+.. ... ... ..+ +....++++.+++||+|
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~V 87 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 87 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCEE
Confidence 58999999999 8887766654 3 56899999876 320 001 111 22235788899999999
Q ss_pred EEeccCch---hhh----------------------------hccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q psy7383 235 SLHCTLNE---HNH----------------------------HLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAALK 281 (501)
Q Consensus 235 il~lPlt~---~T~----------------------------~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL~ 281 (501)
+++++... .++ .++- .+.+....|+++|||++-.-=+-..++.+...
T Consensus 88 Vitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~~p 167 (450)
T 1s6y_A 88 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTK 167 (450)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHCC
T ss_pred EEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCC
Confidence 99998522 111 1110 23444556899999998764344455545443
Q ss_pred cCCceEE
Q psy7383 282 QGRIRAA 288 (501)
Q Consensus 282 ~g~I~GA 288 (501)
..++.|.
T Consensus 168 ~~rViG~ 174 (450)
T 1s6y_A 168 QEKVVGL 174 (450)
T ss_dssp CCCEEEC
T ss_pred CCCEEEe
Confidence 3356554
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.02 Score=57.42 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=59.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceec-----CCHHHHHh-----cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRV-----YTLQDLLF-----QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~-----~sLdelL~-----~sDvVil~lPlt 241 (501)
.|++|.|+|.|.||..+++.++.+|+ +|++.+++..+ +..+++ ...+ .++.+.+. ..|+|+-++...
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~ 242 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNE 242 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCH
Confidence 68899999999999999999999999 99999976432 222233 2211 12333332 478888776532
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+ + -...++.|+++..+|.++.
T Consensus 243 ~-~----~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 243 A-A----IHQGLMALIPGGEARILGI 263 (343)
T ss_dssp H-H----HHHHHHHEEEEEEEEECCC
T ss_pred H-H----HHHHHHHHhcCCEEEEEec
Confidence 1 1 1456777888888888764
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.016 Score=55.84 Aligned_cols=65 Identities=20% Similarity=0.149 Sum_probs=46.0
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh----hcCceecCCHHHHHhc-CCEEEEecc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK----SLGLTRVYTLQDLLFQ-SDCVSLHCT 239 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~----~~gv~~~~sLdelL~~-sDvVil~lP 239 (501)
+++|.|.|.|.||+.+++.|...|++|++.+|+....... ...+....+++++++. +|+|+.+..
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 5789999999999999999999999999999875421000 0111112234556776 999987764
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.037 Score=53.55 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=45.7
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCch----hh------hhcCceec-------CCHHHHHhcCCEEEE
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDG----IE------KSLGLTRV-------YTLQDLLFQSDCVSL 236 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~----~~------~~~gv~~~-------~sLdelL~~sDvVil 236 (501)
.++|.|+|. |.||+.+++.|...|++|++.+|..... .. ...+++.+ .++.++++++|+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 468999995 9999999999999999999999875321 10 12233321 234566778888877
Q ss_pred ecc
Q psy7383 237 HCT 239 (501)
Q Consensus 237 ~lP 239 (501)
+..
T Consensus 84 ~a~ 86 (308)
T 1qyc_A 84 TVG 86 (308)
T ss_dssp CCC
T ss_pred CCc
Confidence 664
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0098 Score=60.65 Aligned_cols=65 Identities=22% Similarity=0.157 Sum_probs=43.3
Q ss_pred eEEeeccchHHHHHHHHHHh-CCCEEEEE-CCCCCch--hhhhc------------------CceecCCHHHHHhcCCEE
Q psy7383 177 TLGIVGLGRIGSAVALRAKA-FGFNVIFY-DPYLPDG--IEKSL------------------GLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~a-fG~~Vi~~-dr~~~~~--~~~~~------------------gv~~~~sLdelL~~sDvV 234 (501)
+|||+|+|.||+.+++.|.. -++++.+. |+..... ..... ++....+.++++.++|+|
T Consensus 3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV 82 (337)
T 1cf2_P 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV 82 (337)
T ss_dssp EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEE
Confidence 79999999999999999976 46787654 4432210 11111 111112567788899999
Q ss_pred EEeccCc
Q psy7383 235 SLHCTLN 241 (501)
Q Consensus 235 il~lPlt 241 (501)
+.++|..
T Consensus 83 ~~atp~~ 89 (337)
T 1cf2_P 83 IDCTPEG 89 (337)
T ss_dssp EECCSTT
T ss_pred EECCCch
Confidence 9999854
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0085 Score=59.66 Aligned_cols=39 Identities=15% Similarity=0.345 Sum_probs=35.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.+|+|++|.|||.|.+|...++.|...|++|+++++...
T Consensus 9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~ 47 (274)
T 1kyq_A 9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH 47 (274)
T ss_dssp ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 468999999999999999999999999999999997543
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.021 Score=60.14 Aligned_cols=106 Identities=13% Similarity=0.179 Sum_probs=64.6
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEE-ECCCC---------C-----chhh---hhcC-------ceecCCHHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF-YDPYL---------P-----DGIE---KSLG-------LTRVYTLQD 226 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~-~dr~~---------~-----~~~~---~~~g-------v~~~~sLde 226 (501)
++.|+||.|.|+|++|+.+|+.|..+|++|++ .|.+. + +.+. ...+ .+.+ +.++
T Consensus 209 ~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~ 287 (421)
T 2yfq_A 209 KMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEE 287 (421)
T ss_dssp CGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC---------------
T ss_pred CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-Cccc
Confidence 58999999999999999999999999999984 45541 0 0000 0111 1212 2344
Q ss_pred HH-hcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 227 LL-FQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 227 lL-~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
++ .+|||++-|. +.+.|+.+....+ ...+++-.+-+.+- .++ .+.|.++.|.
T Consensus 288 ~~~~~~DIliP~A-----~~n~i~~~~A~~l-~ak~VvEgAN~P~t-~ea-~~il~~~GI~ 340 (421)
T 2yfq_A 288 FWTKEYDIIVPAA-----LENVITGERAKTI-NAKLVCEAANGPTT-PEG-DKVLTERGIN 340 (421)
T ss_dssp -------CEEECS-----CSSCSCHHHHTTC-CCSEEECCSSSCSC-HHH-HHHHHHHTCE
T ss_pred hhcCCccEEEEcC-----CcCcCCcccHHHc-CCeEEEeCCccccC-HHH-HHHHHHCCCE
Confidence 43 3799998764 3677888888888 36677777877754 333 3555565554
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.023 Score=54.71 Aligned_cols=65 Identities=11% Similarity=0.006 Sum_probs=46.6
Q ss_pred CeEEeec-cchHHHHHHHHHHhC-CCEEEEECCCCCchh-hhhcCcee-------cCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAF-GFNVIFYDPYLPDGI-EKSLGLTR-------VYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~af-G~~Vi~~dr~~~~~~-~~~~gv~~-------~~sLdelL~~sDvVil~lPl 240 (501)
++|.|.| .|.||+.+++.|... |.+|++.+|+..... ....+++. ..+++++++++|+|+.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 4688998 699999999999987 999999998754211 11223321 12456778999999987664
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.012 Score=59.28 Aligned_cols=111 Identities=22% Similarity=0.175 Sum_probs=66.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCCc--hhhhh--c------CceecCCHHHHHhcCCEEEEeccCchh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPD--GIEKS--L------GLTRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~--~~~~~--~------gv~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
+||+|||.|.+|..++..|...+ -+|..+|..... +.... . ..+...+-.+.+++||+|+++.+....
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~ 80 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR 80 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 47999999999999999998766 589999986421 11110 0 111111235679999999998864321
Q ss_pred ---h--------hhccc--HHHHhcCCCCcEEEEcCCCCccCHH--HHHHH--HHcCCceEE
Q psy7383 244 ---N--------HHLIN--EFTIKQMRPGAFLVNTARGGLVDDD--SLAAA--LKQGRIRAA 288 (501)
Q Consensus 244 ---T--------~~lI~--~~~l~~MK~gAilINvaRG~vVde~--aL~~a--L~~g~I~GA 288 (501)
+ ..++. .+.+....+++++|+++- .+|.- .+.+. +...++.|.
T Consensus 81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~~t~~~~k~s~~p~~rviG~ 140 (310)
T 2xxj_A 81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN--PVDVMTQVAYALSGLPPGRVVGS 140 (310)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS--SHHHHHHHHHHHHTCCGGGEEEC
T ss_pred CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC--chHHHHHHHHHHcCCCHHHEEec
Confidence 1 11110 123333478999999854 34443 33333 333466554
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.059 Score=53.98 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=56.8
Q ss_pred CeEEeec-cchHHHHHHHHHHh-CCCEEE-EECCCCCc----hhhh-----hcCceecCCHHHHHhcCCEEEEeccCchh
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKA-FGFNVI-FYDPYLPD----GIEK-----SLGLTRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~a-fG~~Vi-~~dr~~~~----~~~~-----~~gv~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
.+|+|+| +|+||+.+++.+.. -++++. ++|+.... +... ..|+....++++++.++|+|+-..+ ++
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~--p~ 99 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ--PQ 99 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC--HH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC--HH
Confidence 4799999 99999999999864 478855 45775321 1111 2456666799999999999987654 22
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.. + +.....++.|.-+|-...|
T Consensus 100 a~--~-~~~~~~l~~Gv~vViGTTG 121 (288)
T 3ijp_A 100 AS--V-LYANYAAQKSLIHIIGTTG 121 (288)
T ss_dssp HH--H-HHHHHHHHHTCEEEECCCC
T ss_pred HH--H-HHHHHHHHcCCCEEEECCC
Confidence 11 1 1122234456666655566
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.034 Score=58.98 Aligned_cols=87 Identities=26% Similarity=0.282 Sum_probs=64.3
Q ss_pred cccCCeEEeeccc----------hHHHHHHHHHHhCCCEEEEECCCCCchhhhh--cCceecCCHHHHHhcCCEEEEecc
Q psy7383 172 RIRGDTLGIVGLG----------RIGSAVALRAKAFGFNVIFYDPYLPDGIEKS--LGLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 172 ~L~gktVGIVGlG----------~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~--~gv~~~~sLdelL~~sDvVil~lP 239 (501)
.++|++|+|+|+- .=...+++.|+..|++|.+|||...+..... ..+..+.+++++++++|.|++++.
T Consensus 330 ~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t~ 409 (444)
T 3vtf_A 330 GLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIATA 409 (444)
T ss_dssp CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECSC
T ss_pred ccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEccC
Confidence 5799999999986 2378899999999999999999864332222 235667789999999999999876
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.. +-+.+ + + ++.++||+ |.
T Consensus 410 h~-ef~~l-d------~-~~~vv~D~-Rn 428 (444)
T 3vtf_A 410 WP-QYEGL-D------Y-RGKVVVDG-RY 428 (444)
T ss_dssp CG-GGGGS-C------C-TTCEEEES-SC
T ss_pred CH-HHhCC-C------c-CCCEEEEC-CC
Confidence 43 22222 2 2 46788885 54
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.028 Score=58.74 Aligned_cols=88 Identities=22% Similarity=0.164 Sum_probs=62.1
Q ss_pred cCCeEEeeccc----------hHHHHHHHHHHhCCCEEEEECCCCCchhh----hhcC--------ceecCCHHHHHhcC
Q psy7383 174 RGDTLGIVGLG----------RIGSAVALRAKAFGFNVIFYDPYLPDGIE----KSLG--------LTRVYTLQDLLFQS 231 (501)
Q Consensus 174 ~gktVGIVGlG----------~IG~~iA~~L~afG~~Vi~~dr~~~~~~~----~~~g--------v~~~~sLdelL~~s 231 (501)
.|++|+|+|+. .-...+++.|...|++|.+|||....... +.++ ...+.++++.++++
T Consensus 312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (436)
T 1mv8_A 312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS 391 (436)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence 68999999997 56789999999999999999997322110 1111 13345788999999
Q ss_pred CEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 232 DvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
|+|++++.. ++-+.+ + .+.|+ +.++||+ |+
T Consensus 392 d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~-r~ 421 (436)
T 1mv8_A 392 DVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL-VG 421 (436)
T ss_dssp SEEEECSCC-GGGHHH-H---HSCCT-TCEEEES-SS
T ss_pred cEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC-CC
Confidence 999998765 232222 2 34565 6788887 54
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.034 Score=57.84 Aligned_cols=88 Identities=20% Similarity=0.138 Sum_probs=63.1
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCC------------------------HHHH
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYT------------------------LQDL 227 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~s------------------------Ldel 227 (501)
.|++|.|+|. |.||..+++.++.+|++|++.+++..+ +..+++|...+.+ .+++
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 299 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLV 299 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHH
Confidence 5899999998 999999999999999999998865432 3445566543211 1111
Q ss_pred ---H-hcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 228 ---L-FQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 228 ---L-~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. ...|+|+-++.. + .-...+..|+++..+|+++.
T Consensus 300 ~~~~g~g~Dvvid~~G~--~----~~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 300 VEKAGREPDIVFEHTGR--V----TFGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHSSCCSEEEECSCH--H----HHHHHHHHSCTTCEEEESCC
T ss_pred HHHhCCCceEEEECCCc--h----HHHHHHHHHhcCCEEEEEec
Confidence 1 248999887652 1 12567788999999999974
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.026 Score=55.21 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=47.3
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCch--hhhh------cCcee--------cCCHHHHHhcCCEEE
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKS------LGLTR--------VYTLQDLLFQSDCVS 235 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~------~gv~~--------~~sLdelL~~sDvVi 235 (501)
+.+++|.|.|. |.||+.+++.|...|++|++++|..... .... .+++. ..++++++.+.|+|+
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 88 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence 67899999987 9999999999999999999999864221 0000 11211 123456677889887
Q ss_pred EeccC
Q psy7383 236 LHCTL 240 (501)
Q Consensus 236 l~lPl 240 (501)
.+...
T Consensus 89 h~A~~ 93 (342)
T 1y1p_A 89 HIASV 93 (342)
T ss_dssp ECCCC
T ss_pred EeCCC
Confidence 76543
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.041 Score=58.65 Aligned_cols=108 Identities=10% Similarity=0.025 Sum_probs=67.8
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEE-EECC-------CC-Cch-h-------------hhh----c-CceecC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVI-FYDP-------YL-PDG-I-------------EKS----L-GLTRVY 222 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi-~~dr-------~~-~~~-~-------------~~~----~-gv~~~~ 222 (501)
.+|.|+||.|-|+|++|+.+|+.|..+|.+|+ +.|. .- +.+ . ... . +.+.+
T Consensus 248 ~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v- 326 (470)
T 2bma_A 248 IPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF- 326 (470)
T ss_dssp CCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC-
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe-
Confidence 46899999999999999999999999999998 3342 21 111 0 000 0 22322
Q ss_pred CHHHHH-hcCCEEEEeccCchhhhhcccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 223 TLQDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQMR--PGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 223 sLdelL-~~sDvVil~lPlt~~T~~lI~~~~l~~MK--~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+.++++ ..|||++-|. +.+.|+.+....+. .=.+++--+-+. +..+| .+.|.+..|.
T Consensus 327 ~~~~~~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p-~T~eA-~~~L~~rGIl 386 (470)
T 2bma_A 327 PNEKPWGVPCTLAFPCA-----TQNDVDLDQAKLLQKNGCILVGEGANMP-STVDA-INLFKSNNII 386 (470)
T ss_dssp SSCCTTSSCCSEEEECS-----STTCBCSHHHHHHHHTTCCEEECCSSSC-BCHHH-HHHHHHTTCE
T ss_pred cCcCeeecCccEEEecc-----ccCcCCHHHHHHHHhcCcEEEEeCCCCC-CCHHH-HHHHHHCCcE
Confidence 112333 3789887664 46777766666651 223566666666 45555 6777777765
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.033 Score=54.48 Aligned_cols=65 Identities=25% Similarity=0.315 Sum_probs=44.9
Q ss_pred CCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC-C---chhh------hhcCceec-------CCHHHHHhcCCEEEE
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL-P---DGIE------KSLGLTRV-------YTLQDLLFQSDCVSL 236 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~-~---~~~~------~~~gv~~~-------~sLdelL~~sDvVil 236 (501)
.++|.|.| .|.||+.+++.|...|++|++.+|.. . .... ...+++.+ .++.++++++|+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~ 83 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS 83 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 46799999 59999999999999999999999875 2 1110 11233211 235566778888777
Q ss_pred ecc
Q psy7383 237 HCT 239 (501)
Q Consensus 237 ~lP 239 (501)
+..
T Consensus 84 ~a~ 86 (321)
T 3c1o_A 84 ALP 86 (321)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.017 Score=57.69 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=57.6
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-hhhh-hcCceec------CCHHHHHh-----cCCEEEEecc
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-GIEK-SLGLTRV------YTLQDLLF-----QSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~-~~gv~~~------~sLdelL~-----~sDvVil~lP 239 (501)
.|++|.|+|. |.||+.+++.++.+|++|++.+++... +..+ .+|...+ .++.+.+. ..|+|+.++.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g 234 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVG 234 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCC
Confidence 5889999997 999999999999999999999876432 2233 3454321 12223322 3677776653
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. + .-...++.|+++..+|.++-
T Consensus 235 ~--~----~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 235 G--K----MLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp H--H----HHHHHHTTEEEEEEEEECCC
T ss_pred H--H----HHHHHHHHHhcCCEEEEEcc
Confidence 1 1 12455667777777777653
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.021 Score=60.56 Aligned_cols=107 Identities=17% Similarity=0.152 Sum_probs=65.5
Q ss_pred CeEEeeccchHHHHHHHHHHh----------CCCEEE-EECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKA----------FGFNVI-FYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~a----------fG~~Vi-~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~ 242 (501)
.+|||||+|.||+.+++.+.. .+.+|. ++|++.........+.....++++++. +.|+|+.++|...
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~~ 90 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGLE 90 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSST
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCch
Confidence 479999999999999987753 456654 456654322111123445568999987 5799999998532
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHcCCce
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARGGLV-DDDSLAAALKQGRIR 286 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG~vV-de~aL~~aL~~g~I~ 286 (501)
....+ ..+.|+.|.-+|..--.-.. +-+.|.++.++....
T Consensus 91 ~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~ 131 (444)
T 3mtj_A 91 PAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM 131 (444)
T ss_dssp THHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence 22222 23445556555544332222 336788877776654
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.021 Score=56.48 Aligned_cols=70 Identities=19% Similarity=0.123 Sum_probs=46.5
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhh--hhcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIE--KSLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~--~~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
..+.+|+|.|.|. |.||+.+++.|...|++|++.++....... ....+....++++++.++|+|+.+...
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~ 87 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF 87 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence 4588999999987 999999999999999999999987543100 001111122456778899999877653
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.026 Score=56.87 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=46.3
Q ss_pred CeEEeeccchHHHHHHHHHHh--CCCEE-EEECCCCCc---hhhhhcCcee-cCCHHHHHh-----cCCEEEEecc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKA--FGFNV-IFYDPYLPD---GIEKSLGLTR-VYTLQDLLF-----QSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~a--fG~~V-i~~dr~~~~---~~~~~~gv~~-~~sLdelL~-----~sDvVil~lP 239 (501)
.+|||||+|.||+.+++.+.. -++++ .++|+.... ...+..++.. ..+.++++. +.|+|++++|
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp 80 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS 80 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC
Confidence 479999999999999999954 46664 457877544 2334566642 346778764 4799999998
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.023 Score=57.08 Aligned_cols=88 Identities=25% Similarity=0.303 Sum_probs=55.9
Q ss_pred cCCeEEee-ccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CCHHHHHh-----cCCEEEEeccCch
Q psy7383 174 RGDTLGIV-GLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YTLQDLLF-----QSDCVSLHCTLNE 242 (501)
Q Consensus 174 ~gktVGIV-GlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~sLdelL~-----~sDvVil~lPlt~ 242 (501)
.|++|.|+ |.|.||..+++.++.+|++|++.+++..+ +..+++|...+ .++.+.+. ..|+|+-++.. +
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~-~ 228 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNT-D 228 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCH-H
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCc-h
Confidence 68999999 79999999999999999999999976432 33444554322 12222221 35666665431 1
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINva 266 (501)
. .-...++.|+++..+|.++
T Consensus 229 ~----~~~~~~~~l~~~G~iv~~~ 248 (346)
T 3fbg_A 229 M----YYDDMIQLVKPRGHIATIV 248 (346)
T ss_dssp H----HHHHHHHHEEEEEEEEESS
T ss_pred H----HHHHHHHHhccCCEEEEEC
Confidence 1 1134556667777766664
|
| >2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.055 Score=56.32 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=58.7
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
-.++-|+|.|.+++++++.++.+|++|+++|++..... .+-+..+|-++...| + ..+. .+.
T Consensus 204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~------------~~~fp~a~~~~~~~p---~--~~~~--~~~ 264 (386)
T 2we8_A 204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFAT------------TARFPTADEVVVDWP---H--RYLA--AQA 264 (386)
T ss_dssp CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSC------------TTTCSSSSEEEESCH---H--HHHH--HHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhcc------------cccCCCceEEEeCCh---H--HHHH--hhc
Confidence 45899999999999999999999999999997643110 011234444433322 1 1110 011
Q ss_pred ---cCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 255 ---QMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 255 ---~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
.+.+++++|=+.++.-.|...|..+|+..
T Consensus 265 ~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~ 296 (386)
T 2we8_A 265 EAGAIDARTVVCVLTHDPKFDVPLLEVALRLP 296 (386)
T ss_dssp HHTCCCTTCEEEECCCCHHHHHHHHHHHTTSS
T ss_pred cccCCCCCcEEEEEECChHhHHHHHHHHhcCC
Confidence 15667777777777777777777777776
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.063 Score=51.76 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=33.3
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCC
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
.++.||++.|.|. |.||+++|+.|...|++|++.|+.
T Consensus 6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~ 43 (287)
T 3pxx_A 6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC 43 (287)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence 3589999999975 689999999999999999999876
|
| >4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.36 Score=49.67 Aligned_cols=96 Identities=14% Similarity=0.215 Sum_probs=67.9
Q ss_pred cccCCeEEeecc--chHHHHHHHHHHhCCCEEEEECCCC---Cchh-------hhhcC--ceecCCHHHHHhcCCEEEEe
Q psy7383 172 RIRGDTLGIVGL--GRIGSAVALRAKAFGFNVIFYDPYL---PDGI-------EKSLG--LTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 172 ~L~gktVGIVGl--G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~-------~~~~g--v~~~~sLdelL~~sDvVil~ 237 (501)
.+.|++|++||= +++.++.+..+..||++|.+..|.. ++.. ....| +....+++|.++++|||..-
T Consensus 178 ~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~ 257 (358)
T 4h31_A 178 ALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTD 257 (358)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEE
Confidence 488999999995 4899999999999999999998752 2211 11223 34557899999999999753
Q ss_pred ccC----chhh---------hhcccHHHHhc-CCCCcEEEEcCC
Q psy7383 238 CTL----NEHN---------HHLINEFTIKQ-MRPGAFLVNTAR 267 (501)
Q Consensus 238 lPl----t~~T---------~~lI~~~~l~~-MK~gAilINvaR 267 (501)
.=. .++. ..-++.+.+++ .|++++|.-+.-
T Consensus 258 ~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~LP 301 (358)
T 4h31_A 258 VWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCLP 301 (358)
T ss_dssp CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECSC
T ss_pred EEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCCC
Confidence 221 1111 13468888876 478899888753
|
| >3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.037 Score=58.81 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=70.0
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEE-EECCCC--------Cc-hhh-----hh-------------cCceecC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVI-FYDPYL--------PD-GIE-----KS-------------LGLTRVY 222 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi-~~dr~~--------~~-~~~-----~~-------------~gv~~~~ 222 (501)
.+|+|+||.|-|+|++|+.+|+.|...|++|+ +.|.+- +. .+. +. .+.+.+
T Consensus 235 ~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v- 313 (456)
T 3r3j_A 235 DNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF- 313 (456)
T ss_dssp CCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE-
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe-
Confidence 36899999999999999999999999999986 555321 10 000 00 123333
Q ss_pred CHHHHH-hcCCEEEEeccCchhhhhcccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 223 TLQDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQMR--PGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 223 sLdelL-~~sDvVil~lPlt~~T~~lI~~~~l~~MK--~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+-++++ ..|||++-|. +.+.|+.+....++ .-.+++--+.+.+-.+ + .+.|.+..|.
T Consensus 314 ~~~~i~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~e-A-~~iL~~rGI~ 373 (456)
T 3r3j_A 314 ENQKPWNIPCDIAFPCA-----TQNEINENDADLFIQNKCKMIVEGANMPTHIK-A-LHKLKQNNII 373 (456)
T ss_dssp CSCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHHTCCEEECCSSSCBCTT-H-HHHHHTTTCE
T ss_pred CCccccccCccEEEeCC-----CccchhhHHHHHHHhcCCeEEEecCCCCCCHH-H-HHHHHHCCCE
Confidence 234443 4689887663 46788888777763 2456777777775433 3 3567776665
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.033 Score=55.60 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=64.4
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCC--EEEEECC--CCCc--hhh----hh----cCceecCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGF--NVIFYDP--YLPD--GIE----KS----LGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~--~Vi~~dr--~~~~--~~~----~~----~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
++|.|+| .|.+|+.++..|...|. ++..+|+ .... ... .. ..++...+..+.++++|+|+++...
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~ 80 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence 4799999 99999999999987665 7888997 4311 100 00 0111111225679999999998764
Q ss_pred chh---hhh-c--cc-------HHHHhcCCCCcEEEEcCCCCccCH--HHHHHH--HHcCCceEE
Q psy7383 241 NEH---NHH-L--IN-------EFTIKQMRPGAFLVNTARGGLVDD--DSLAAA--LKQGRIRAA 288 (501)
Q Consensus 241 t~~---T~~-l--I~-------~~~l~~MK~gAilINvaRG~vVde--~aL~~a--L~~g~I~GA 288 (501)
... ++. + .| .+.+....+.+++++++-. +|. ..+.+. +...++.|.
T Consensus 81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNP--v~~~~~~~~~~~~~p~~rviG~ 143 (303)
T 1o6z_A 81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP--VDLLNRHLYEAGDRSREQVIGF 143 (303)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS--HHHHHHHHHHHSSSCGGGEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCCh--HHHHHHHHHHHcCCCHHHeeec
Confidence 221 110 0 01 1233445788999997543 444 333333 334466655
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.053 Score=54.64 Aligned_cols=90 Identities=20% Similarity=0.178 Sum_probs=61.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCc-hhhhhcC--c-eec------CCHHH-HH-----hcCCEEEE
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPD-GIEKSLG--L-TRV------YTLQD-LL-----FQSDCVSL 236 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~-~~~~~~g--v-~~~------~sLde-lL-----~~sDvVil 236 (501)
.|++|.|+|.|.+|...++.++.+|++ |++.+++..+ +..+++. + ... .++.+ +. ...|+|+-
T Consensus 179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid 258 (363)
T 3m6i_A 179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE 258 (363)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence 578999999999999999999999998 8988876432 3333332 1 110 11222 21 15799998
Q ss_pred eccCchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 237 ~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
++... .+ -...++.++++..+|.++-.
T Consensus 259 ~~g~~-~~----~~~~~~~l~~~G~iv~~G~~ 285 (363)
T 3m6i_A 259 CTGVE-SS----IAAAIWAVKFGGKVFVIGVG 285 (363)
T ss_dssp CSCCH-HH----HHHHHHHSCTTCEEEECCCC
T ss_pred CCCCh-HH----HHHHHHHhcCCCEEEEEccC
Confidence 77522 11 24577889999999998753
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.022 Score=56.74 Aligned_cols=88 Identities=18% Similarity=0.159 Sum_probs=60.1
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-----CCHHH-HH-----hcCCEEEEeccC
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-----YTLQD-LL-----FQSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-----~sLde-lL-----~~sDvVil~lPl 240 (501)
.|++|.|+| .|.||..+++.++.+|++|++.+++..+ +..+++|...+ .++.+ +. ...|+|+.++..
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~ 219 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ 219 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence 588999999 8999999999999999999999976432 33444554322 12222 22 146777776542
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+ .-...++.|+++..+|.++.
T Consensus 220 --~----~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 220 --D----TWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp --G----GHHHHHTTEEEEEEEEECCC
T ss_pred --H----HHHHHHHHhcCCCEEEEEec
Confidence 1 12456778888888888764
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.14 Score=52.70 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=66.5
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCC---Cchhhh---h--------cCceecCCHHHHHhcCCEEEE
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYL---PDGIEK---S--------LGLTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~~---~--------~gv~~~~sLdelL~~sDvVil 236 (501)
.|.|++|++||=+ ++.++++..+..||++|.+..|.. +..... + ..+....+++|+++++|||..
T Consensus 185 ~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvyt 264 (353)
T 3sds_A 185 GLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVT 264 (353)
T ss_dssp SCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEE
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEe
Confidence 4799999999965 577888888899999999998753 222111 1 134556799999999999986
Q ss_pred ec--cCchh----------hhhcccHHHHhc--CCCCcEEEEcC
Q psy7383 237 HC--TLNEH----------NHHLINEFTIKQ--MRPGAFLVNTA 266 (501)
Q Consensus 237 ~l--Plt~~----------T~~lI~~~~l~~--MK~gAilINva 266 (501)
-+ +...+ ....++.+.++. +|++++|.-+.
T Consensus 265 d~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL 308 (353)
T 3sds_A 265 DTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL 308 (353)
T ss_dssp CCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred CCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence 43 22111 113568888888 78888888775
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.028 Score=57.39 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=58.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCc-hhhhhcCceecC--C---HHH----HH---h--cCCEEEEe
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPD-GIEKSLGLTRVY--T---LQD----LL---F--QSDCVSLH 237 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~-~~~~~~gv~~~~--s---Lde----lL---~--~sDvVil~ 237 (501)
.|++|.|+|.|.||...++.++.+| .+|++.+++... +..+++|...+. . -++ +. . ..|+|+-+
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~ 274 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA 274 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEEC
Confidence 5789999999999999999999999 699999976432 344556654221 1 111 11 1 36777766
Q ss_pred ccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 238 lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+..... -...++.|+++..+|.++.
T Consensus 275 ~g~~~~-----~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 275 TGDSRA-----LLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp SSCTTH-----HHHHHHHEEEEEEEEECCC
T ss_pred CCCHHH-----HHHHHHHHhcCCEEEEEec
Confidence 542111 1345667777777777764
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.033 Score=55.65 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=48.4
Q ss_pred ccccCCeEEeec-cchHHHHHHHHHHhC-CCEEEEECCCCCch--hhhhcCcee--------cCCHHHHHhcCCEEEEec
Q psy7383 171 ARIRGDTLGIVG-LGRIGSAVALRAKAF-GFNVIFYDPYLPDG--IEKSLGLTR--------VYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 171 ~~L~gktVGIVG-lG~IG~~iA~~L~af-G~~Vi~~dr~~~~~--~~~~~gv~~--------~~sLdelL~~sDvVil~l 238 (501)
..+.+++|.|.| .|.||+.+++.|... |++|++.+|..... .....+++. ...++++++++|+|+.+.
T Consensus 20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A 99 (372)
T 3slg_A 20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLV 99 (372)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECB
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcC
Confidence 457889999999 799999999999887 99999999875431 111122221 123456788999998765
Q ss_pred cC
Q psy7383 239 TL 240 (501)
Q Consensus 239 Pl 240 (501)
-.
T Consensus 100 ~~ 101 (372)
T 3slg_A 100 AI 101 (372)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.31 Score=49.11 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=62.9
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhC-CCEEEEECCCC---Cchh---hhhcCce--ecCCHHHHHhcCCEEEEeccC
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAF-GFNVIFYDPYL---PDGI---EKSLGLT--RVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~af-G~~Vi~~dr~~---~~~~---~~~~gv~--~~~sLdelL~~sDvVil~lPl 240 (501)
+.|+||++||= +++.++++..+..| |++|.+..|.. +... .++.|.. ...+++|.++++|||....=-
T Consensus 149 l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~q 228 (306)
T 4ekn_B 149 IDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQ 228 (306)
T ss_dssp STTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCCC
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCcc
Confidence 78999999997 58999999999999 99999998752 2221 1233433 356899999999999864211
Q ss_pred c------hhh-----hhcccHHHHhcCCCCcEEEEcC
Q psy7383 241 N------EHN-----HHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 241 t------~~T-----~~lI~~~~l~~MK~gAilINva 266 (501)
. .+- ..-++.+.+++ ++++|.-+.
T Consensus 229 ~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~l 263 (306)
T 4ekn_B 229 KERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPL 263 (306)
T ss_dssp GGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCS
T ss_pred cccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCC
Confidence 0 110 13356666665 566665554
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.035 Score=58.99 Aligned_cols=64 Identities=22% Similarity=0.169 Sum_probs=47.5
Q ss_pred CCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
+++|.|.| .|.||+.+++.|...|++|++.+|+........... .+.+.+++.++|+|+.+...
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~--~~~~~~~l~~~D~Vih~A~~ 211 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDP--LNPASDLLDGADVLVHLAGE 211 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCT--TSCCTTTTTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecc--cchhHHhcCCCCEEEECCCC
Confidence 68999999 799999999999999999999998754321111111 12345678899999876653
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.025 Score=62.22 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=63.1
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhh----------------------hhc--Cc--eec
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIE----------------------KSL--GL--TRV 221 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~----------------------~~~--gv--~~~ 221 (501)
..|++++|.|||+|.+|..+|+.|...|. ++..+|...-+ ... +.. ++ +..
T Consensus 322 ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~ 401 (615)
T 4gsl_A 322 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 401 (615)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEe
Confidence 35899999999999999999999999997 68888864310 000 000 11 111
Q ss_pred ---------------------CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 222 ---------------------YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 222 ---------------------~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
..+++++.++|+|+.++ .+.+++.+++...... +..+|+.+
T Consensus 402 ~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~t-Dn~~tR~~ln~~c~~~---~~PlI~aa 463 (615)
T 4gsl_A 402 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLV-DSRESRWLPSLLSNIE---NKTVINAA 463 (615)
T ss_dssp CCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECC-SSGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred eccccccCccccchhhhcCCHHHHHHHhhcCCEEEecC-CCHHHHHHHHHHHHHc---CCeEEEEE
Confidence 12456789999998765 6778888888765543 44577754
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.022 Score=56.41 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=44.1
Q ss_pred CeEEeecc-chHHHHHHHHHH-hCCCEEE-EECCCCCc----hhhh-----hcCceecCCHHHHHhcCCEEEEec
Q psy7383 176 DTLGIVGL-GRIGSAVALRAK-AFGFNVI-FYDPYLPD----GIEK-----SLGLTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~-afG~~Vi-~~dr~~~~----~~~~-----~~gv~~~~sLdelL~~sDvVil~l 238 (501)
.+|+|+|+ |.||+.+++.+. .-|+++. ++|+.... .... ..++....++++++.++|+|+-+.
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft 80 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT 80 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence 58999999 999999999876 4578876 67765421 1111 123344457888888999999444
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.02 Score=57.59 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=61.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCC-chhhhhcCceecC-----CHHH-HHh-----cCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLP-DGIEKSLGLTRVY-----TLQD-LLF-----QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~-~~~~~~~gv~~~~-----sLde-lL~-----~sDvVil~lPl 240 (501)
.|.+|.|+|.|.||...++.++.+|+ +|++.++... .+..+++|...+. ++.+ +.+ ..|+|+-++..
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~ 245 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD 245 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 57899999999999999999999999 7999997653 2455566654321 2222 221 36888776542
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. + .-...++.++++..+|.++-
T Consensus 246 ~-~----~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 246 V-H----TFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp T-T----HHHHHHHHEEEEEEEEECCC
T ss_pred h-H----HHHHHHHHHhcCCEEEEecc
Confidence 1 1 12456677888888887763
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.016 Score=57.29 Aligned_cols=86 Identities=9% Similarity=0.172 Sum_probs=59.1
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC-CchhhhhcCceecC-CHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL-PDGIEKSLGLTRVY-TLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~-~~~~~~~~gv~~~~-sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
.|++|.|+|.|.+|+..++.++.+|++|++.+ +. ..+..+++|...+. +.+++-...|+|+-++.. +. + ..
T Consensus 142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~-~~----~-~~ 214 (315)
T 3goh_A 142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNS-QN----A-AA 214 (315)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------T
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCc-hh----H-HH
Confidence 58999999999999999999999999999999 54 33556667765432 222222356887766542 11 1 34
Q ss_pred HHhcCCCCcEEEEcC
Q psy7383 252 TIKQMRPGAFLVNTA 266 (501)
Q Consensus 252 ~l~~MK~gAilINva 266 (501)
.++.++++..+|.++
T Consensus 215 ~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 215 LVPSLKANGHIICIQ 229 (315)
T ss_dssp TGGGEEEEEEEEEEC
T ss_pred HHHHhcCCCEEEEEe
Confidence 567788888888874
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.05 Score=57.31 Aligned_cols=107 Identities=21% Similarity=0.223 Sum_probs=70.0
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEE-EECCCC--------Cch-hhh---hcCc------------eecCCHHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVI-FYDPYL--------PDG-IEK---SLGL------------TRVYTLQD 226 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi-~~dr~~--------~~~-~~~---~~gv------------~~~~sLde 226 (501)
++.|++|.|.|+|++|+.+|+.|..+|++|+ +.|.+- +.+ +.+ ..+. +.+.+.++
T Consensus 207 ~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~ 286 (421)
T 1v9l_A 207 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA 286 (421)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchh
Confidence 6899999999999999999999999999998 444421 111 110 1111 11213355
Q ss_pred HHh-cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 227 LLF-QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 227 lL~-~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
++. .||+++-|. +.+.|+++....++ =.+++--+-+.+ ..++ .+.|.++.|.
T Consensus 287 ~~~~~~Dil~P~A-----~~~~I~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi~ 339 (421)
T 1v9l_A 287 IFKLDVDIFVPAA-----IENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVV 339 (421)
T ss_dssp GGGCCCSEEEECS-----CSSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred hhcCCccEEEecC-----cCCccchhhHHHcC-ceEEEecCCCcC-CHHH-HHHHHHCCCE
Confidence 554 799998774 35667777777774 356677777765 4444 3567777665
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.071 Score=51.65 Aligned_cols=66 Identities=24% Similarity=0.150 Sum_probs=46.6
Q ss_pred CCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc---hhh------hhcCceec-------CCHHHHHhcCCEEEEe
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD---GIE------KSLGLTRV-------YTLQDLLFQSDCVSLH 237 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~---~~~------~~~gv~~~-------~sLdelL~~sDvVil~ 237 (501)
.++|.|.| .|.||+.+++.|...|++|++.+|.... +.. ...+++.+ .++.++++++|+|+.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 46899998 5999999999999999999999987531 110 11233221 2355678888888877
Q ss_pred ccC
Q psy7383 238 CTL 240 (501)
Q Consensus 238 lPl 240 (501)
...
T Consensus 84 a~~ 86 (313)
T 1qyd_A 84 LAG 86 (313)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.033 Score=55.73 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=63.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhC-CCEEEEECCCCCc-hhhhhcCceecC----CH-HHH---Hh--cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAF-GFNVIFYDPYLPD-GIEKSLGLTRVY----TL-QDL---LF--QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~af-G~~Vi~~dr~~~~-~~~~~~gv~~~~----sL-del---L~--~sDvVil~lPlt 241 (501)
.|.+|.|+|.|.+|...++.++.+ |.+|++.+++..+ +..+++|...+. ++ +++ .. ..|+|+-++...
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~ 250 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQ 250 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCH
Confidence 588999999999999999999988 7899999876532 455667764321 22 222 22 589998877532
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+ . -...++.++++..+|.++-
T Consensus 251 -~---~-~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 251 -S---T-IDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp -H---H-HHHHHHHEEEEEEEEECSC
T ss_pred -H---H-HHHHHHHHhcCCEEEEECC
Confidence 1 1 2456777888888888863
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.066 Score=53.72 Aligned_cols=86 Identities=17% Similarity=0.082 Sum_probs=61.6
Q ss_pred CeEEee-ccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-----CCHHHHH------hcCCEEEEeccCch
Q psy7383 176 DTLGIV-GLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-----YTLQDLL------FQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIV-GlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-----~sLdelL------~~sDvVil~lPlt~ 242 (501)
++|.|. |.|.||..+++.++.+|++|++.+++..+ +..+++|...+ .++.+.+ ...|+|+-++.. +
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~-~ 244 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG-P 244 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCH-H
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCC-h
Confidence 567666 99999999999999999999999976543 44455665432 1232222 268999887652 1
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
. + ...++.|+++..+|.++.
T Consensus 245 ~----~-~~~~~~l~~~G~iv~~G~ 264 (349)
T 3pi7_A 245 L----A-SAIFNAMPKRARWIIYGR 264 (349)
T ss_dssp H----H-HHHHHHSCTTCEEEECCC
T ss_pred h----H-HHHHhhhcCCCEEEEEec
Confidence 1 1 567889999999999974
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.034 Score=53.29 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=46.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceec----CCHHHHHhcCCEEEEeccCc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRV----YTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~----~sLdelL~~sDvVil~lPlt 241 (501)
.++|.|.|.|.||+.+++.|...|++|++.+|+.... .....+++.+ .+++ +.++|+|+.+....
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence 3789999999999999999999999999999875432 1112333321 1233 67888888776543
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.036 Score=60.72 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=62.3
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCC-------------------ch-hh----hh--cCc--eec
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLP-------------------DG-IE----KS--LGL--TRV 221 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~-------------------~~-~~----~~--~gv--~~~ 221 (501)
..|++++|.|||+|.+|..+|+.|...|. ++.++|...- +. .. ++ .++ +..
T Consensus 323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~ 402 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 402 (598)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEE
Confidence 46899999999999999999999999998 6888874310 00 00 00 011 111
Q ss_pred ---------------------CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 222 ---------------------YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 222 ---------------------~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
..++++++++|+|+.++ .+.+++.+++...... +..+|+.+
T Consensus 403 ~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdat-Dn~~tR~lin~~c~~~---~~plI~aa 464 (598)
T 3vh1_A 403 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLV-DSRESRWLPSLLSNIE---NKTVINAA 464 (598)
T ss_dssp CCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECC-SBGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred eccccccCcccccccccccCHHHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHhc---CCCEEEEE
Confidence 12356788999998876 5667888887665543 34666654
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.016 Score=55.55 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=45.5
Q ss_pred CCeEEeeccchHHHHHHHHH--HhCCCEEEE-ECCCCC-chhh-hhcCce--ecCCHHHHHh--cCCEEEEeccCc
Q psy7383 175 GDTLGIVGLGRIGSAVALRA--KAFGFNVIF-YDPYLP-DGIE-KSLGLT--RVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L--~afG~~Vi~-~dr~~~-~~~~-~~~gv~--~~~sLdelL~--~sDvVil~lPlt 241 (501)
.++|+|+|.|++|+.+++.+ ...|+++.+ +|..+. ..-. .-.|+. ..++++++++ +.|++++++|..
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~ 159 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST 159 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence 45799999999999999973 456888665 565544 3111 122332 3456777777 489999999843
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.11 Score=54.67 Aligned_cols=106 Identities=22% Similarity=0.369 Sum_probs=71.9
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEE-EECCC-------C-Cch-h---hhhcC-ce--ecCCHHHHH-hcCCEE
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVI-FYDPY-------L-PDG-I---EKSLG-LT--RVYTLQDLL-FQSDCV 234 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi-~~dr~-------~-~~~-~---~~~~g-v~--~~~sLdelL-~~sDvV 234 (501)
+|+|++|.|.|+|++|+.+|+.|...|++|+ +.|.+ - +.+ . ....+ +. .. +-++++ ..|||+
T Consensus 215 ~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~-~~~e~~~~~~DVl 293 (419)
T 3aoe_E 215 DLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL-APEEVFGLEAEVL 293 (419)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCB-CTTTGGGSSCSEE
T ss_pred CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeec-cchhhhccCceEE
Confidence 5899999999999999999999999999998 55542 1 111 1 11111 11 11 224444 489999
Q ss_pred EEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 235 il~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+-|. +.+.|+.+....++- .+++.-+-+.+ ..++ .+.|.++.|.
T Consensus 294 iP~A-----~~n~i~~~~A~~l~a-k~V~EgAN~p~-t~~A-~~~L~~~Gi~ 337 (419)
T 3aoe_E 294 VLAA-----REGALDGDRARQVQA-QAVVEVANFGL-NPEA-EAYLLGKGAL 337 (419)
T ss_dssp EECS-----CTTCBCHHHHTTCCC-SEEEECSTTCB-CHHH-HHHHHHHTCE
T ss_pred Eecc-----cccccccchHhhCCc-eEEEECCCCcC-CHHH-HHHHHHCCCE
Confidence 8774 467888888888853 58888888875 4444 3556666665
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.027 Score=57.80 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=63.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC----CH-HHHHh------cCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY----TL-QDLLF------QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~----sL-delL~------~sDvVil~lPl 240 (501)
.|++|.|+|.|.||...++.++.+|+ +|++.+++... +..+++|...+. ++ .+.+. ..|+|+-++..
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~ 264 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGF 264 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence 58899999999999999999999999 99999976532 445566654221 21 22221 47888888753
Q ss_pred chh----------hhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 241 NEH----------NHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 241 t~~----------T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
... .... -.+.++.++++..+|.++-.
T Consensus 265 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 265 EAHGLGDEANTETPNGA-LNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp TCBCSGGGTTSBCTTHH-HHHHHHHEEEEEEEECCSCC
T ss_pred ccccccccccccccHHH-HHHHHHHHhcCCEEEEeccc
Confidence 210 0001 24567888888888887643
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.043 Score=57.39 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=72.0
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch---hhhhcCceec--CCHHHHHhcCCEEEEeccC---chhh
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG---IEKSLGLTRV--YTLQDLLFQSDCVSLHCTL---NEHN 244 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~---~~~~~gv~~~--~sLdelL~~sDvVil~lPl---t~~T 244 (501)
+.+|+|.|||+|..|.+.|+.|+..|++|.++|.+.... ..+ .|++.. ....+.+..+|+|++.-.. .++.
T Consensus 3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~ 81 (439)
T 2x5o_A 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPSL 81 (439)
T ss_dssp CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHH
T ss_pred CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHH
Confidence 678999999999999999999999999999999764321 122 455432 1124566689999886322 2221
Q ss_pred h-------hcccH-H-HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 245 H-------HLINE-F-TIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 245 ~-------~lI~~-~-~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
. .++.+ + ....++...+-|-=+.|+--...-|...|++.
T Consensus 82 ~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~ 129 (439)
T 2x5o_A 82 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA 129 (439)
T ss_dssp HHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 1 23332 1 22335555666666778877666667777664
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.05 Score=56.03 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=53.6
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEEEECC-CCCch----hh---hhc-----------------C--ceec--CCHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVIFYDP-YLPDG----IE---KSL-----------------G--LTRV--YTLQ 225 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi~~dr-~~~~~----~~---~~~-----------------g--v~~~--~sLd 225 (501)
.+|||+|+|.||+.+.|.|... .++|.+.+- ....+ .. ... | +... .+.+
T Consensus 18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 97 (354)
T 3cps_A 18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA 97 (354)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence 4899999999999999999876 688777653 33221 00 000 0 1111 1444
Q ss_pred HH-H--hcCCEEEEeccCchhhhhcccHHHHhcCCCCc--EEEEcCC
Q psy7383 226 DL-L--FQSDCVSLHCTLNEHNHHLINEFTIKQMRPGA--FLVNTAR 267 (501)
Q Consensus 226 el-L--~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gA--ilINvaR 267 (501)
++ . .++|+|+.++|.... + +..-+.++.|+ ++|+.+-
T Consensus 98 ~i~w~~~~vDvV~eatg~~~s-~----e~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 98 EIPWGASGAQIVCESTGVFTT-E----EKASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp GCCHHHHTCCEEEECSSSCCS-H----HHHGGGGTTTCSEEEESSCC
T ss_pred HCCcccCCCCEEEECCCchhh-H----HHHHHHHHcCCcEEEEeCCC
Confidence 44 2 579999999884321 1 22234457788 8888864
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.025 Score=56.65 Aligned_cols=64 Identities=8% Similarity=0.075 Sum_probs=45.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEE-EECCCCC-c-h-hh---hhcCc--eecCCHHHHHhc--CCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVI-FYDPYLP-D-G-IE---KSLGL--TRVYTLQDLLFQ--SDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi-~~dr~~~-~-~-~~---~~~gv--~~~~sLdelL~~--sDvVil~lPl 240 (501)
.+|||||+|.+|+..++.+ .-+++|. ++|+... . + .. ++.++ ..+.++++++++ .|+|++++|.
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~ 77 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVF 77 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSH
T ss_pred eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence 4799999999999777777 5677866 4787652 1 1 11 12343 556799999974 8999999884
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.05 Score=50.60 Aligned_cols=68 Identities=13% Similarity=-0.000 Sum_probs=47.6
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhC--CCEEEEECCCCCchhhhhcCce-------ecCCHHHHHhcCCEEEEeccC
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAF--GFNVIFYDPYLPDGIEKSLGLT-------RVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~af--G~~Vi~~dr~~~~~~~~~~gv~-------~~~sLdelL~~sDvVil~lPl 240 (501)
..+++|.|.| .|.||+.+++.|... |++|++.+|+.........++. ...++++++++.|+|+.+...
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 79 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA 79 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence 3578999998 699999999999998 8999999986422111011111 112456778899999887653
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.039 Score=51.64 Aligned_cols=65 Identities=22% Similarity=0.099 Sum_probs=43.1
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhh-hcCceecCCHHHHHh----cCCEEEEeccC
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEK-SLGLTRVYTLQDLLF----QSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~-~~gv~~~~sLdelL~----~sDvVil~lPl 240 (501)
|+|.|.|. |.||+.+++.|...|++|++.+|+....... ...+....+++++++ ..|+|+.+.-.
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~ 72 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV 72 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence 46888875 9999999999999999999999875421110 000111123445554 78999877543
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.35 Score=50.54 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=50.6
Q ss_pred cccCCeEEeecc-----c---hHHHHHHHHHHhCCCEEEEECCCC---Cchhh-------hhcC--ceecCCHHHHHhcC
Q psy7383 172 RIRGDTLGIVGL-----G---RIGSAVALRAKAFGFNVIFYDPYL---PDGIE-------KSLG--LTRVYTLQDLLFQS 231 (501)
Q Consensus 172 ~L~gktVGIVGl-----G---~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~-------~~~g--v~~~~sLdelL~~s 231 (501)
.|.|++|+|+|- | ++.++++..+..||++|.+..|.. .+... +..| +....+++|.++++
T Consensus 188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~a 267 (399)
T 3q98_A 188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDA 267 (399)
T ss_dssp GGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTC
T ss_pred ccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCC
Confidence 388999999973 4 788999999999999999998762 22211 1234 34557999999999
Q ss_pred CEEEEec
Q psy7383 232 DCVSLHC 238 (501)
Q Consensus 232 DvVil~l 238 (501)
|||..-+
T Consensus 268 DvVytd~ 274 (399)
T 3q98_A 268 DIVYPKS 274 (399)
T ss_dssp SEEEECC
T ss_pred CEEEecC
Confidence 9998743
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.077 Score=52.08 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=33.7
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.++.||++.|.|- |.||+++|+.|...|++|++.++..
T Consensus 45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~ 83 (294)
T 3r3s_A 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPA 83 (294)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3589999999975 7899999999999999999998763
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.027 Score=55.91 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=55.1
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-----CCH-HHHHh-----cCCEEEEeccC
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-----YTL-QDLLF-----QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-----~sL-delL~-----~sDvVil~lPl 240 (501)
.|++|.|+| .|.||+.+++.++..|++|++.+++... +..+++|...+ .++ +++.+ ..|+|+.++.
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g- 218 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG- 218 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc-
Confidence 588999999 7999999999999999999999876422 22233343211 111 11211 3566666654
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.++ -...++.|+++..+|.++.
T Consensus 219 -~~~----~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 219 -RDT----WERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp -GGG----HHHHHHTEEEEEEEEECCC
T ss_pred -hHH----HHHHHHHhcCCCEEEEEec
Confidence 111 2455666677777776653
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.037 Score=54.68 Aligned_cols=67 Identities=19% Similarity=0.127 Sum_probs=47.7
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhh--h---h-------cCcee-------cCCHHHHHhcCC
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIE--K---S-------LGLTR-------VYTLQDLLFQSD 232 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~--~---~-------~gv~~-------~~sLdelL~~sD 232 (501)
+.+++|.|.| .|.||+.+++.|...|++|++.+|....... . . .+++. ..+++++++++|
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 102 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD 102 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence 6789999999 6999999999999999999999987532111 0 0 12221 113456677889
Q ss_pred EEEEecc
Q psy7383 233 CVSLHCT 239 (501)
Q Consensus 233 vVil~lP 239 (501)
+|+.+..
T Consensus 103 ~Vih~A~ 109 (351)
T 3ruf_A 103 HVLHQAA 109 (351)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 8877654
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.079 Score=53.29 Aligned_cols=88 Identities=17% Similarity=0.117 Sum_probs=60.6
Q ss_pred cC-CeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc-----hhhhhcCceecCC--------HHHHH--------hc
Q psy7383 174 RG-DTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD-----GIEKSLGLTRVYT--------LQDLL--------FQ 230 (501)
Q Consensus 174 ~g-ktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~-----~~~~~~gv~~~~s--------LdelL--------~~ 230 (501)
.| .+|.|+|. |.||+..++.++.+|++|++..+...+ ...+++|...+.+ +.+.+ ..
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g 245 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE 245 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCC
Confidence 47 89999998 999999999999999999888654432 3345666543211 11112 14
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.|+|+-++.. + ... +.++.++++..+|.++-
T Consensus 246 ~Dvvid~~G~-~---~~~--~~~~~l~~~G~~v~~g~ 276 (364)
T 1gu7_A 246 AKLALNCVGG-K---SST--GIARKLNNNGLMLTYGG 276 (364)
T ss_dssp EEEEEESSCH-H---HHH--HHHHTSCTTCEEEECCC
T ss_pred ceEEEECCCc-h---hHH--HHHHHhccCCEEEEecC
Confidence 7888877642 1 122 56788899999988874
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=94.51 E-value=0.026 Score=54.39 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=33.8
Q ss_pred cccCCeEEeec---cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG---LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG---lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.||++.|.| .|.||+++|+.|...|++|++.+++.
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~ 43 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 43 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCh
Confidence 47899999999 59999999999999999999999875
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.084 Score=53.96 Aligned_cols=85 Identities=16% Similarity=0.017 Sum_probs=49.6
Q ss_pred eEEeeccchHHHHHHHHHHhC-CCEEEEEC-CCCCch--hhhhc--------------------CceecCCHHHHHhcCC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAF-GFNVIFYD-PYLPDG--IEKSL--------------------GLTRVYTLQDLLFQSD 232 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~af-G~~Vi~~d-r~~~~~--~~~~~--------------------gv~~~~sLdelL~~sD 232 (501)
+|||+|+|.||+.+++.|... +++|.+.+ ...... ..+.. ++....+.++++.++|
T Consensus 4 kVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~vD 83 (343)
T 2yyy_A 4 KVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDAD 83 (343)
T ss_dssp EEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGCS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCCC
Confidence 799999999999999999776 68876653 221110 00111 1111113455667899
Q ss_pred EEEEeccCchhhhhcccHHHHhcCCCCcEEEEc
Q psy7383 233 CVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 233 vVil~lPlt~~T~~lI~~~~l~~MK~gAilINv 265 (501)
+|+.|+|.....+. .+ -..++.|..+|..
T Consensus 84 iV~eatg~~~s~~~---a~-~~~l~aG~~VI~s 112 (343)
T 2yyy_A 84 IVVDGAPKKIGKQN---LE-NIYKPHKVKAILQ 112 (343)
T ss_dssp EEEECCCTTHHHHH---HH-HTTTTTTCEEEEC
T ss_pred EEEECCCccccHHH---HH-HHHHHCCCEEEEC
Confidence 99999874321111 01 2456777766653
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.065 Score=52.02 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=33.6
Q ss_pred cccCCeEEeecc---chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL---GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl---G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.||++.|.|- |.||+++|+.|...|++|++.+++.
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~ 57 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP 57 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 378999999997 6999999999999999999998865
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.036 Score=52.91 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=32.0
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD 210 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~ 210 (501)
--+|++.|.|. |.||+++|+.|...|++|++.+|+...
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~ 58 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP 58 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 44789999975 789999999999999999999987643
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.044 Score=57.86 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=51.6
Q ss_pred ccCCeEEeeccc----------hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEecc
Q psy7383 173 IRGDTLGIVGLG----------RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 173 L~gktVGIVGlG----------~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lP 239 (501)
..+++|+|+|+- .-...++++|+..|++|.+|||..... ...+...+.++++++++||+|++.-.
T Consensus 330 ~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~--~~~~~~~~~~~~~~~~~aD~iv~~~~ 404 (432)
T 3pid_A 330 RKPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVIIYEPVMQED--EFFNSRVVRDLNAFKQEADVIISNRM 404 (432)
T ss_dssp TCCSSEEEECC-----------CHHHHHHHHHHHTTCCEEEECTTCCSS--EETTEEECCCHHHHHHHCSEEECSSC
T ss_pred hcCCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcCCEEEEECCCCChh--hcCCceEECCHHHHHhcCCEEEECCC
Confidence 468999999985 236889999999999999999987542 23455566799999999999987643
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.051 Score=52.85 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=40.1
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhc--CCEEEEecc
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQ--SDCVSLHCT 239 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~--sDvVil~lP 239 (501)
+++|.|.|. |.||+.+++.|...|++|++.+|+..........+....++++++++ .|+|+.+..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC-
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence 578999986 99999999999999999999997643210111112222345667765 899887664
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.04 Score=56.34 Aligned_cols=94 Identities=19% Similarity=0.206 Sum_probs=62.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-----CHHHHH----h--cCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-----TLQDLL----F--QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-----sLdelL----~--~sDvVil~lPl 240 (501)
.|++|.|+|.|.||...++.++.+|+ +|++.+++..+ +..+++|+..+. ++.+.+ . ..|+|+-++..
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~ 264 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF 264 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence 57899999999999999999999999 79999876532 445566764221 122222 1 46888887753
Q ss_pred chhh-----hh-----cccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHN-----HH-----LINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T-----~~-----lI~~~~l~~MK~gAilINvaR 267 (501)
.... .+ -.-.+.++.++++..+|.++-
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 265 EARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp TCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred cccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence 2100 00 012456777888888887764
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.16 Score=49.14 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=33.8
Q ss_pred cccccCCeEEeecc-ch--HHHHHHHHHHhCCCEEEEECCCC
Q psy7383 170 CARIRGDTLGIVGL-GR--IGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 170 ~~~L~gktVGIVGl-G~--IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+..+.||++.|.|. |. ||+++|+.|...|++|++.++..
T Consensus 21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 62 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ 62 (280)
T ss_dssp -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence 34689999999995 44 99999999999999999999875
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.042 Score=54.56 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=48.6
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCc---hhhh---------hcCceec-------CCHHHHHhcC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPD---GIEK---------SLGLTRV-------YTLQDLLFQS 231 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~---~~~~---------~~gv~~~-------~sLdelL~~s 231 (501)
.+.+++|.|.|. |.||+.+++.|...|++|++.+|.... .... ..++..+ .++++++.++
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 103 (352)
T 1sb8_A 24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 103 (352)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence 477899999987 999999999999999999999986531 1110 0122211 1345667788
Q ss_pred CEEEEeccC
Q psy7383 232 DCVSLHCTL 240 (501)
Q Consensus 232 DvVil~lPl 240 (501)
|+|+.+...
T Consensus 104 d~vih~A~~ 112 (352)
T 1sb8_A 104 DYVLHQAAL 112 (352)
T ss_dssp SEEEECCSC
T ss_pred CEEEECCcc
Confidence 988777653
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.043 Score=54.24 Aligned_cols=70 Identities=23% Similarity=0.143 Sum_probs=46.1
Q ss_pred ccccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchh--hhh-cCcee-------cCCHHHHHhc--CCEEEEe
Q psy7383 171 ARIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGI--EKS-LGLTR-------VYTLQDLLFQ--SDCVSLH 237 (501)
Q Consensus 171 ~~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~--~~~-~gv~~-------~~sLdelL~~--sDvVil~ 237 (501)
..+.+++|.|.| .|.||+.+++.|...|++|++++|...... ... .++.. ..++++++++ +|+|+.+
T Consensus 17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~ 96 (333)
T 2q1w_A 17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHT 96 (333)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEEC
Confidence 357889999998 799999999999999999999998643211 110 12211 1134566776 8988876
Q ss_pred ccC
Q psy7383 238 CTL 240 (501)
Q Consensus 238 lPl 240 (501)
...
T Consensus 97 A~~ 99 (333)
T 2q1w_A 97 AAS 99 (333)
T ss_dssp CCC
T ss_pred cee
Confidence 653
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.11 Score=52.62 Aligned_cols=89 Identities=15% Similarity=0.044 Sum_probs=59.7
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceec-----CCHHHHHh-----cCCEEEEeccCc
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRV-----YTLQDLLF-----QSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~-----~sLdelL~-----~sDvVil~lPlt 241 (501)
-.|++|.|+|. |.+|...++.++.+|++|++.....+.+..+++|...+ .++.+.+. ..|+|+-++...
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~ 242 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNV 242 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCch
Confidence 36899999999 89999999999999999988753223345566775432 12222221 378888776521
Q ss_pred hhhhhcccHHHHhcC-CCCcEEEEcC
Q psy7383 242 EHNHHLINEFTIKQM-RPGAFLVNTA 266 (501)
Q Consensus 242 ~~T~~lI~~~~l~~M-K~gAilINva 266 (501)
++ -...++.| +++..+|.++
T Consensus 243 -~~----~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 243 -ES----TTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp -HH----HHHHHHHSCTTCEEEEESS
T ss_pred -HH----HHHHHHHhhcCCCEEEEEe
Confidence 11 13456667 5788888876
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.038 Score=55.71 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=61.1
Q ss_pred ccCCeEEeeccchHHHHH-HHHH-HhCCCE-EEEECCCCC----chhhhhcCceec----CCHHHHHh---cCCEEEEec
Q psy7383 173 IRGDTLGIVGLGRIGSAV-ALRA-KAFGFN-VIFYDPYLP----DGIEKSLGLTRV----YTLQDLLF---QSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~i-A~~L-~afG~~-Vi~~dr~~~----~~~~~~~gv~~~----~sLdelL~---~sDvVil~l 238 (501)
..+++|.|+|.|.||... ++.+ +.+|++ |++.+++.. .+..+++|...+ .++.++.+ ..|+|+-++
T Consensus 171 ~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~i~~~~gg~Dvvid~~ 250 (357)
T 2b5w_A 171 WDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQMDFIYEAT 250 (357)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGGHHHHSCCEEEEEECS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHHHHHhCCCCCEEEECC
Confidence 345899999999999999 9999 999997 999998765 345566776543 12222111 367777665
Q ss_pred cCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 239 TLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 239 Plt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
... .+ -...++.++++..+|.++-
T Consensus 251 g~~-~~----~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 251 GFP-KH----AIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp CCH-HH----HHHHHHHEEEEEEEEECCC
T ss_pred CCh-HH----HHHHHHHHhcCCEEEEEeC
Confidence 421 11 1456677777777777764
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.08 Score=51.48 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=45.8
Q ss_pred CCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCc
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt 241 (501)
+++|.|.| .|.||+.+++.|...|++|++.+++... .+....+++++++ ++|+|+.+....
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~------D~~d~~~~~~~~~~~~~d~vih~a~~~ 66 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL------NLLDSRAVHDFFASERIDQVYLAAAKV 66 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC------CTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccC------CccCHHHHHHHHHhcCCCEEEEcCeec
Confidence 57899998 6999999999999999999998875321 1221234667787 899998776543
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.084 Score=55.51 Aligned_cols=65 Identities=15% Similarity=0.349 Sum_probs=50.7
Q ss_pred ccCCeEEeec-----cch---HHHHHHHHHHhCCCEEEEECCCC---Cchhh-------hhcC--ceecCCHHHHHhcCC
Q psy7383 173 IRGDTLGIVG-----LGR---IGSAVALRAKAFGFNVIFYDPYL---PDGIE-------KSLG--LTRVYTLQDLLFQSD 232 (501)
Q Consensus 173 L~gktVGIVG-----lG~---IG~~iA~~L~afG~~Vi~~dr~~---~~~~~-------~~~g--v~~~~sLdelL~~sD 232 (501)
|.|++|+||| +|. +.++++..+..||++|.+..|.. .+... +..| +....+++|+++++|
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD 265 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD 265 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence 7899999997 454 99999999999999999998863 22211 1234 355678999999999
Q ss_pred EEEEe
Q psy7383 233 CVSLH 237 (501)
Q Consensus 233 vVil~ 237 (501)
||..-
T Consensus 266 VVytd 270 (418)
T 2yfk_A 266 VVYPK 270 (418)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99875
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.071 Score=52.36 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=33.6
Q ss_pred ccccCCeEEeecc-ch--HHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVGL-GR--IGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~--IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
..+.||++.|.|. |. ||+++|+.|...|++|++.+++.
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~ 67 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD 67 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4589999999997 44 99999999999999999998873
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.057 Score=55.47 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=33.2
Q ss_pred CeEEeeccchHHHHHHHHHHhC--C--CEEE-EECCCCCchhhhhc-CceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--G--FNVI-FYDPYLPDGIEKSL-GLTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--G--~~Vi-~~dr~~~~~~~~~~-gv~~~~sLdelL~~ 230 (501)
.+|||||+|.||+.+++.+... | ++|. ++|++. ....... |+....+.++++.+
T Consensus 5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~-~~~~~~~~gi~~~~~~~e~l~~ 64 (358)
T 1ebf_A 5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER-SLISKDFSPLNVGSDWKAALAA 64 (358)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB-EEECSSCSCCSCTTCHHHHHHT
T ss_pred EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECCh-hhhccccCCCCccccHHHHHhc
Confidence 3799999999999999999875 2 5654 456432 1111122 44332456666654
|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.15 Score=54.68 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=70.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEE--------CCCC-Cch-hh---hhc-------CceecCCHHHHH-hc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY--------DPYL-PDG-IE---KSL-------GLTRVYTLQDLL-FQ 230 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~--------dr~~-~~~-~~---~~~-------gv~~~~sLdelL-~~ 230 (501)
+|.|+||.|-|+|++|+.+|+.|..+|++|++. |+.- +.+ +. ... +.+.+. ++++ .+
T Consensus 241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~--~~il~~~ 318 (501)
T 3mw9_A 241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE--GSILEVD 318 (501)
T ss_dssp SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC--SCGGGSC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec--ccccccc
Confidence 489999999999999999999999999999863 3221 111 10 011 122221 1333 47
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
|||++-|. +.+.|+.+....++ -.+++-.+.+. ++.++ .+.|.+..|.
T Consensus 319 ~DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p-~T~eA-~~iL~~rGIl 366 (501)
T 3mw9_A 319 CDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGP-TTPEA-DKIFLERNIM 366 (501)
T ss_dssp CSEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSC-BCHHH-HHHHHHTTCE
T ss_pred ceEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCc-CCHHH-HHHHHHCCCE
Confidence 99987663 46888888888886 45777777776 45544 4566666664
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.052 Score=55.46 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=54.1
Q ss_pred CeEEeec-cchHHHHHHHHHHh-CCCEEEEECCCC---Cch--hhh----hcC---ceecC--CHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKA-FGFNVIFYDPYL---PDG--IEK----SLG---LTRVY--TLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~a-fG~~Vi~~dr~~---~~~--~~~----~~g---v~~~~--sLdelL~~sDvVil~lP 239 (501)
.+|+|+| .|.+|+.+.++|.. -.+++..+..+. ..+ ... -.+ ..... +.++++.++|+|++|+|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p 84 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA 84 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence 4799999 69999999999987 456776654322 211 110 011 11111 34555589999999998
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
... ++.+. .. .++.|+.+|+.+.-
T Consensus 85 ~~~-s~~~~-~~---~~~~g~~vIDlSa~ 108 (337)
T 3dr3_A 85 HEV-SHDLA-PQ---FLEAGCVVFDLSGA 108 (337)
T ss_dssp HHH-HHHHH-HH---HHHTTCEEEECSST
T ss_pred hHH-HHHHH-HH---HHHCCCEEEEcCCc
Confidence 432 12221 12 24679999999864
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.043 Score=54.99 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=32.3
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.|++|.|+|. |.||+.+++.++.+|++|++.+++.
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~ 201 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE 201 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5789999999 9999999999999999999998764
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.053 Score=57.50 Aligned_cols=107 Identities=19% Similarity=0.238 Sum_probs=63.4
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEE-EECCCCCchh--hhhc-C----------------------ceecCCHHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVI-FYDPYLPDGI--EKSL-G----------------------LTRVYTLQDLL 228 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi-~~dr~~~~~~--~~~~-g----------------------v~~~~sLdelL 228 (501)
.+|||||+|.||+.+++.+... +++|. ++|++..... .+.. | .....++++++
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL 103 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL 103 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence 4799999999999999988654 67754 5677654321 1111 3 23456899999
Q ss_pred h--cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCC-ccCHHHHHHHHHcCCce
Q psy7383 229 F--QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGG-LVDDDSLAAALKQGRIR 286 (501)
Q Consensus 229 ~--~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~-vVde~aL~~aL~~g~I~ 286 (501)
. +.|+|++++|... ... +-.++.|+.|.-++...-.- +.+-+.|.++.++..+.
T Consensus 104 ~d~dIDaVviaTp~p~-~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv 160 (446)
T 3upl_A 104 SNPLIDVIIDATGIPE-VGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI 160 (446)
T ss_dssp TCTTCCEEEECSCCHH-HHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCCCCCEEEEcCCChH-HHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence 7 5899999987532 111 12333444554454321111 12335666666665544
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
Probab=94.15 E-value=0.11 Score=55.23 Aligned_cols=108 Identities=13% Similarity=0.234 Sum_probs=66.3
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEE-EC-------CC-C-Cch----h--------------hhhcCceecC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIF-YD-------PY-L-PDG----I--------------EKSLGLTRVY 222 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~-~d-------r~-~-~~~----~--------------~~~~gv~~~~ 222 (501)
.+|.|+||.|.|+|++|+.+|+.|...|.+|++ .| +. . +.+ + ...++.+.+
T Consensus 226 ~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i- 304 (449)
T 1bgv_A 226 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF- 304 (449)
T ss_dssp CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEe-
Confidence 468999999999999999999999999999986 44 32 1 000 0 000012222
Q ss_pred CHHHHH-hcCCEEEEeccCchhhhhcccHHHHhcCCC-C-cEEEEcCCCCccCHHHHHHHHHcC-Cce
Q psy7383 223 TLQDLL-FQSDCVSLHCTLNEHNHHLINEFTIKQMRP-G-AFLVNTARGGLVDDDSLAAALKQG-RIR 286 (501)
Q Consensus 223 sLdelL-~~sDvVil~lPlt~~T~~lI~~~~l~~MK~-g-AilINvaRG~vVde~aL~~aL~~g-~I~ 286 (501)
+.++++ ..||+++-|. +.+.|+.+....++. | .+++--+-+. +..++- +.|.++ .|.
T Consensus 305 ~~~e~~~~~~Dil~P~A-----~~~~I~~~na~~l~a~g~kiV~EgAN~p-~T~eA~-~~l~~~~Gi~ 365 (449)
T 1bgv_A 305 PGEKPWGQKVDIIMPCA-----TQNDVDLEQAKKIVANNVKYYIEVANMP-TTNEAL-RFLMQQPNMV 365 (449)
T ss_dssp ETCCGGGSCCSEEECCS-----CTTCBCHHHHHHHHHTTCCEEECCSSSC-BCHHHH-HHHHHCTTCE
T ss_pred CchhhhcCCcceeeccc-----cccccchhhHHHHHhcCCeEEEeCCCCc-CCHHHH-HHHHHcCCEE
Confidence 122233 3788876553 467777777777763 2 3555555555 455554 556665 554
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.12 Score=50.09 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=32.6
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.||++.|.|. |.||+++|+.|...|++|++.+++.
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~ 65 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA 65 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 589999999985 7899999999999999999986654
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.055 Score=54.58 Aligned_cols=87 Identities=14% Similarity=0.037 Sum_probs=54.0
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-----CCH-HHHH-----hcCCEEEEeccC
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-----YTL-QDLL-----FQSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-----~sL-delL-----~~sDvVil~lPl 240 (501)
.|++|.|+| .|.||+.+++.++..|++|++.+++... +..+++|...+ .++ +++. ...|+|+.++..
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~ 241 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGG 241 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCG
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCc
Confidence 578999999 7999999999999999999999976432 22233343211 011 1121 135666665531
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINva 266 (501)
+ . -...++.|+++..+|.++
T Consensus 242 -~----~-~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 242 -S----Y-WEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp -G----G-HHHHHHHEEEEEEEEECC
T ss_pred -h----H-HHHHHHhccCCCEEEEEe
Confidence 1 1 134456666666666665
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.052 Score=55.05 Aligned_cols=110 Identities=21% Similarity=0.198 Sum_probs=65.0
Q ss_pred CeEEeeccchHHHHHHHHHHhC--------CCEEE-EECCCCCchhh--------h---hcCce-ecC---CHHHHH-hc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF--------GFNVI-FYDPYLPDGIE--------K---SLGLT-RVY---TLQDLL-FQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af--------G~~Vi-~~dr~~~~~~~--------~---~~gv~-~~~---sLdelL-~~ 230 (501)
.+|||||+|.||+.+++.+... +++|. ++|++...... . ..++. ... ++++++ .+
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~ 86 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD 86 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence 4799999999999999998654 35654 56765432111 0 11221 222 788887 36
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHcCCce
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGL-VDDDSLAAALKQGRIR 286 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~v-Vde~aL~~aL~~g~I~ 286 (501)
.|+|+.++|.. .|...--+-..+.|+.|.-+|...-..+ .+-+.|.++.++....
T Consensus 87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~ 142 (331)
T 3c8m_A 87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRR 142 (331)
T ss_dssp CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCE
Confidence 89999999864 1111111233445666766665433323 2445777777666543
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.08 E-value=0.074 Score=54.44 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=33.4
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~ 208 (501)
..|++++|.|||+|.+|..+|+.|...|. ++.++|...
T Consensus 114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~ 152 (353)
T 3h5n_A 114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ 152 (353)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 45899999999999999999999998887 688888653
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.027 Score=54.06 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=33.5
Q ss_pred cccCCeEEeecc---chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL---GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl---G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.+|++.|.|. |.||+++|+.|...|++|++.+|+.
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~ 44 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence 478999999997 6999999999999999999998864
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.066 Score=56.99 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=72.1
Q ss_pred CCeEEeeccchHHHH-HHHHHHhCCCEEEEECCCCCch--hhhhcCceecC-CHHHHHhcCCEEEEe--ccC-chhh---
Q psy7383 175 GDTLGIVGLGRIGSA-VALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVY-TLQDLLFQSDCVSLH--CTL-NEHN--- 244 (501)
Q Consensus 175 gktVGIVGlG~IG~~-iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~-sLdelL~~sDvVil~--lPl-t~~T--- 244 (501)
.|+|.|||+|.+|.+ +|+.|+..|++|.++|...... ..++.|++... .-.+.+.++|+||+. +|. +++.
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~a 101 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAA 101 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHHH
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHH
Confidence 578999999999996 8999999999999999765432 22345665332 112446789999886 332 2221
Q ss_pred --hh--ccc-HHHHhc-CCCC-cEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 245 --HH--LIN-EFTIKQ-MRPG-AFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 245 --~~--lI~-~~~l~~-MK~g-AilINvaRG~vVde~aL~~aL~~g~ 284 (501)
++ ++. .++|.. |+.. .+-|--+.|+.-...-|...|++..
T Consensus 102 ~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g 148 (494)
T 4hv4_A 102 REARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG 148 (494)
T ss_dssp HHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred HHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC
Confidence 11 333 233333 4432 4556667898888888888888654
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.081 Score=51.06 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=32.9
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
++.+|++.|.| .|.||+++|+.|...|++|++.+|+.
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~ 40 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE 40 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 37889999986 58999999999999999999999874
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=94.02 E-value=0.14 Score=51.52 Aligned_cols=87 Identities=23% Similarity=0.216 Sum_probs=58.7
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC-----chhhhhcCceecCCH--------HHHHh---cCCEEEE
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP-----DGIEKSLGLTRVYTL--------QDLLF---QSDCVSL 236 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~-----~~~~~~~gv~~~~sL--------delL~---~sDvVil 236 (501)
.|++|.|+|. |.||...++.++.+|++|++...... .+..+++|...+.+. .++.. ..|+|+-
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid 246 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALN 246 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEE
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEE
Confidence 5889999998 99999999999999998877654322 134456666533222 12222 3688887
Q ss_pred eccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 237 ~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
++. .+.+ .+.++.++++..+|.++
T Consensus 247 ~~g-~~~~-----~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 247 CVG-GKSS-----TELLRQLARGGTMVTYG 270 (357)
T ss_dssp SSC-HHHH-----HHHHTTSCTTCEEEECC
T ss_pred CCC-cHHH-----HHHHHhhCCCCEEEEEe
Confidence 764 2222 24678888888888875
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.2 Score=51.45 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=56.3
Q ss_pred CeEEeec-cchHHHHHHHHHHhCC-CEEEEECCCCCch--hh-------hhcCceecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFG-FNVIFYDPYLPDG--IE-------KSLGLTRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG-~~Vi~~dr~~~~~--~~-------~~~gv~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
.+||||| .|.+|+.+.++|...- .++..+......+ .. +..-++.. +.++++.++|+|++|+|..
T Consensus 14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~-~~~~~~~~~Dvvf~alp~~--- 89 (351)
T 1vkn_A 14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEF-DPEKVSKNCDVLFTALPAG--- 89 (351)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCC-CHHHHHHHCSEEEECCSTT---
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeC-CHHHhhcCCCEEEECCCcH---
Confidence 5799996 7999999999998764 4666554322211 11 11112221 4566668999999999844
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+.++....+ .|+.+||.+.-
T Consensus 90 ---~s~~~~~~~-~g~~VIDlSsd 109 (351)
T 1vkn_A 90 ---ASYDLVREL-KGVKIIDLGAD 109 (351)
T ss_dssp ---HHHHHHTTC-CSCEEEESSST
T ss_pred ---HHHHHHHHh-CCCEEEECChh
Confidence 334555556 79999999854
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.038 Score=55.50 Aligned_cols=88 Identities=19% Similarity=0.070 Sum_probs=58.0
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC-chhhhhcCceecC---CHHHHH------hcCCEEEEeccCch
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP-DGIEKSLGLTRVY---TLQDLL------FQSDCVSLHCTLNE 242 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~-~~~~~~~gv~~~~---sLdelL------~~sDvVil~lPlt~ 242 (501)
.|++|.|+| .|.||..+++.++.+|++|++. .+.. .+..+++|...+. ++.+.+ ...|+|+-++..
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid~~g~-- 226 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGG-- 226 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHHHHTTSCEEEEEESSCT--
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHHHhcCCCceEEEECCCc--
Confidence 588999999 8999999999999999999998 4322 2334445554321 222222 146777776541
Q ss_pred hhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 243 HNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 243 ~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+ .-...++.|+++..+|.++-.
T Consensus 227 ~----~~~~~~~~l~~~G~iv~~g~~ 248 (343)
T 3gaz_A 227 P----VLDASFSAVKRFGHVVSCLGW 248 (343)
T ss_dssp H----HHHHHHHHEEEEEEEEESCCC
T ss_pred H----HHHHHHHHHhcCCeEEEEccc
Confidence 1 124566777788777777643
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.1 Score=50.81 Aligned_cols=38 Identities=37% Similarity=0.364 Sum_probs=33.9
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
++.||++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~ 44 (285)
T 3sc4_A 6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAE 44 (285)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 478999999975 78999999999999999999998754
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.072 Score=53.63 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=49.1
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCC-CEEEEECCCCCchhh--h-hcCceec-------CCHHHHHhcCCEEEEecc
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFG-FNVIFYDPYLPDGIE--K-SLGLTRV-------YTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG-~~Vi~~dr~~~~~~~--~-~~gv~~~-------~sLdelL~~sDvVil~lP 239 (501)
.+++++|.|.| .|.||+.+++.|...| ++|++++|....... . ..+++.+ .+++++++.+|+|+.+..
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~ 108 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT 108 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence 47899999999 5999999999999999 999999987543211 0 1122211 124456778999987765
Q ss_pred C
Q psy7383 240 L 240 (501)
Q Consensus 240 l 240 (501)
.
T Consensus 109 ~ 109 (377)
T 2q1s_A 109 Y 109 (377)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.063 Score=53.97 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=56.7
Q ss_pred cC--CeEEeecc-chHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhh-cCceec-----CCHHHHHh-----cCCEEEEe
Q psy7383 174 RG--DTLGIVGL-GRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKS-LGLTRV-----YTLQDLLF-----QSDCVSLH 237 (501)
Q Consensus 174 ~g--ktVGIVGl-G~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~-~gv~~~-----~sLdelL~-----~sDvVil~ 237 (501)
.| ++|.|+|. |.||+.+++.++..|+ +|++.+++... +..++ +|...+ .++.+.+. ..|+|+.+
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~ 237 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDN 237 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEEC
Confidence 46 89999998 9999999999999999 99999876422 22222 454321 12222222 36777766
Q ss_pred ccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 238 lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+-. + .-...++.|+++..+|.++-
T Consensus 238 ~G~--~----~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 238 VGG--N----ISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp CCH--H----HHHHHHHTEEEEEEEEECCC
T ss_pred CCH--H----HHHHHHHHhccCcEEEEECC
Confidence 541 1 12456677777777777754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.057 Score=53.74 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=32.0
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.|++|.|+|. |.||+.+++.++.+|++|++.+++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~ 180 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE 180 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5789999995 9999999999999999999999764
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.028 Score=59.61 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=53.1
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceec----C---CHHHH-HhcCCEEEEeccCchhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRV----Y---TLQDL-LFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~----~---sLdel-L~~sDvVil~lPlt~~T 244 (501)
.++|-|+|+|.+|+.+|+.|...|++|++.|..... .....+++..+ . .|+++ +.+||+++.++.. +.
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~--De 80 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT--DE 80 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC--HH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC--hH
Confidence 468999999999999999999999999999986532 12233444322 1 24444 6789998876553 33
Q ss_pred hhcccHHHHhcC
Q psy7383 245 HHLINEFTIKQM 256 (501)
Q Consensus 245 ~~lI~~~~l~~M 256 (501)
.+++-....+.+
T Consensus 81 ~Nl~~~~~Ak~~ 92 (461)
T 4g65_A 81 TNMAACQVAFTL 92 (461)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455543333333
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.071 Score=52.45 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=44.8
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCch--hh---h------h-----cCceecCCHHHHHhcCCEEE
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDG--IE---K------S-----LGLTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~---~------~-----~gv~~~~sLdelL~~sDvVi 235 (501)
+.+++|.|.| .|.||+.+++.|...|++|++..|+.... .. . . ..+....++++++.++|+|+
T Consensus 3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 82 (337)
T 2c29_D 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVF 82 (337)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEE
Confidence 4678999998 89999999999999999999887764321 00 0 0 01111234667888999987
Q ss_pred Eec
Q psy7383 236 LHC 238 (501)
Q Consensus 236 l~l 238 (501)
.+.
T Consensus 83 h~A 85 (337)
T 2c29_D 83 HVA 85 (337)
T ss_dssp ECC
T ss_pred Eec
Confidence 654
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.22 Score=48.52 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=37.4
Q ss_pred CeEEeecc-chHHHHHHHHHHhC-CCEEE-EECCCCCchhhhhcCceecCCHHHHHh-cCCEEEEec
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAF-GFNVI-FYDPYLPDGIEKSLGLTRVYTLQDLLF-QSDCVSLHC 238 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~af-G~~Vi-~~dr~~~~~~~~~~gv~~~~sLdelL~-~sDvVil~l 238 (501)
.+|+|+|+ |+||+.+++.+... ++++. ++|+. .++++++. .+|+|+-+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~--------------~dl~~~~~~~~DvvIDfT 53 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG--------------DPLSLLTDGNTEVVIDFT 53 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT--------------CCTHHHHHTTCCEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC--------------CCHHHHhccCCcEEEEcc
Confidence 37999996 99999999999866 89976 45542 25667665 799888554
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.067 Score=51.76 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=47.6
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCC-CEEEEECCCCCchh---hhhcCceec-------CCHHHHHhcCCEEEEecc
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFG-FNVIFYDPYLPDGI---EKSLGLTRV-------YTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG-~~Vi~~dr~~~~~~---~~~~gv~~~-------~sLdelL~~sDvVil~lP 239 (501)
.++|.|.|. |.||+.+++.|...| ++|++.+|+..... ....+++.+ .+++++++++|+|+.+..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 478999987 999999999999888 99999998764321 112233221 235567889999988764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 501 | ||||
| d1mx3a1 | 193 | c.2.1.4 (A:126-318) Transcription corepressor CtbP | 1e-43 | |
| d1mx3a2 | 133 | c.23.12.1 (A:27-125,A:319-352) Transcription corep | 3e-38 | |
| d1mx3a2 | 133 | c.23.12.1 (A:27-125,A:319-352) Transcription corep | 2e-05 | |
| d1gdha1 | 191 | c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp | 6e-30 | |
| d2naca1 | 188 | c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom | 4e-28 | |
| d1sc6a1 | 188 | c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase | 6e-27 | |
| d1ygya1 | 184 | c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase | 2e-26 | |
| d1dxya1 | 199 | c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro | 3e-17 | |
| d1qp8a2 | 121 | c.23.12.1 (A:1-82,A:264-302) Putative formate dehy | 4e-17 | |
| d2naca2 | 186 | c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas | 9e-17 | |
| d1j4aa1 | 197 | c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto | 4e-16 | |
| d1j4aa2 | 134 | c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen | 3e-14 | |
| d1qp8a1 | 181 | c.2.1.4 (A:83-263) Putative formate dehydrogenase | 4e-14 | |
| d1ygya2 | 130 | c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy | 9e-14 | |
| d1dxya2 | 131 | c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa | 2e-11 | |
| d1li4a1 | 163 | c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas | 4e-11 | |
| d1gdha2 | 129 | c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog | 1e-10 | |
| d1sc6a2 | 132 | c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh | 1e-08 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 3e-05 | |
| d1pjqa1 | 113 | c.2.1.11 (A:1-113) Siroheme synthase CysG, domain | 7e-05 | |
| d2g5ca2 | 171 | c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA { | 1e-04 |
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 150 bits (379), Expect = 1e-43
Identities = 144/193 (74%), Positives = 166/193 (86%)
Query: 127 EEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRI 186
EE AD+TLC ILNLYRR WL +REG + EQ+RE ASG ARIRG+TLGI+GLGR+
Sbjct: 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60
Query: 187 GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246
G AVALRAKAFGFNV+FYDPYL DG+E++LGL RV TLQDLLF SDCV+LHC LNEHNHH
Sbjct: 61 GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120
Query: 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLK 306
LIN+FT+KQMR GAFLVNTARGGLVD+ +LA ALK+GRIR AALDVHESEP++ QG LK
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180
Query: 307 DAPNILCTPHAAF 319
DAPN++CTPHAA+
Sbjct: 181 DAPNLICTPHAAW 193
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 134 bits (338), Expect = 3e-38
Identities = 84/115 (73%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Query: 29 PLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLE 88
PLVALLDGRDC++EMPILKDVATVAFCDAQST EIHEKVLNEAVGALM+HTI LT+EDLE
Sbjct: 2 PLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLE 61
Query: 89 KFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRR 143
KFK LRIIVRIGSG DNID+K+AG+LGIAVCNVP ++ + R
Sbjct: 62 KFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAAS-VYSEQASIEMREEAARE 115
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 42.2 bits (99), Expect = 2e-05
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 297 PYNVFQGNLKDAPNILCT--PHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVN 353
N+ + D I P A+ YSE + E+RE AA EIRRAI GRIPD L+NCVN
Sbjct: 76 FDNIDIKSAGDL-GIAVCNVPAASVYSEQASIEMREEAAREIRRAITGRIPDSLKNCVN 133
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Score = 113 bits (283), Expect = 6e-30
Identities = 60/191 (31%), Positives = 84/191 (43%), Gaps = 7/191 (3%)
Query: 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGS 188
A+ + L+L RR M+R ++ TLGI G G IG
Sbjct: 5 TAEIAMLLLLGSARRAGEGEKMIRTRSW----PGWEPLELVGEKLDNKTLGIYGFGSIGQ 60
Query: 189 AVALRAKAFGFNVIFYDPY-LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247
A+A RA+ F ++ ++D + E S T +L LL S SL+ +
Sbjct: 61 ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYF 120
Query: 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKD 307
N+ TIK + GA +VNTARG LVD++ + AAL+ GR+ A DV EP D
Sbjct: 121 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPN--INEGYYD 178
Query: 308 APNILCTPHAA 318
PN PH
Sbjct: 179 LPNTFLFPHIG 189
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Score = 108 bits (270), Expect = 4e-28
Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 7/191 (3%)
Query: 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGS 188
VA+ + +IL+L R R+G + + S + +G V GRIG
Sbjct: 3 VAEHVVMMILSLVRNYLPSHEWARKGG-----WNIADCVSHAYDLEAMHVGTVAAGRIGL 57
Query: 189 AVALRAKAFGFNVIFY-DPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247
AV R F ++ + LP+ +EK L LT T +D+ D V+L+C L+ H+
Sbjct: 58 AVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHM 117
Query: 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKD 307
IN+ T+K + GA++VNTARG L D D++A AL+ GR+ A DV +P +
Sbjct: 118 INDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQP-APKDHPWRT 176
Query: 308 APNILCTPHAA 318
P TPH +
Sbjct: 177 MPYNGMTPHIS 187
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 105 bits (261), Expect = 6e-27
Identities = 63/193 (32%), Positives = 92/193 (47%), Gaps = 13/193 (6%)
Query: 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGS 188
VA+ + +L L R G + A+G RG LGI+G G IG+
Sbjct: 5 VAELVIGELLLLLRGVPEANAKAHRGVG-------NKLAAGSFEARGKKLGIIGYGHIGT 57
Query: 189 AVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248
+ + A++ G V FYD + + T+V L DLL SD VSLH N +++
Sbjct: 58 QLGILAESLGMYVYFYDIENKLPLGNA---TQVQHLSDLLNMSDVVSLHVPENPSTKNMM 114
Query: 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP---YNVFQGNL 305
I M+PG+ L+N +RG +VD +LA AL + AA+DV +EP + F L
Sbjct: 115 GAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPL 174
Query: 306 KDAPNILCTPHAA 318
+ N+L TPH
Sbjct: 175 AEFDNVLLTPHIG 187
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 103 bits (258), Expect = 2e-26
Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 10/188 (5%)
Query: 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGS 188
A+ L L+L R+ +RE + ++ I G T+G+VGLGRIG
Sbjct: 5 AAEHALALLLAASRQIPAADASLREHT-------WKRSSFSGTEIFGKTVGVVGLGRIGQ 57
Query: 189 AVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248
VA R AFG V+ YDPY+ LG+ + DLL ++D +S+H LI
Sbjct: 58 LVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSL-DDLLARADFISVHLPKTPETAGLI 116
Query: 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDA 308
++ + + +PG +VN ARGGLVD+ +LA A+ G +RAA LDV +EP L +
Sbjct: 117 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEP--CTDSPLFEL 174
Query: 309 PNILCTPH 316
++ TPH
Sbjct: 175 AQVVVTPH 182
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 78.0 bits (190), Expect = 3e-17
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 31/209 (14%)
Query: 129 VADTTLCLILNLYRRTYWLANMVREGK-----KFTGPEQLREAASGCARIRGDTLGIVGL 183
+A+ L L L R + ++ G F G E ++
Sbjct: 5 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGH--------- 55
Query: 184 GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEH 243
IG K FG VI YDPY G +L+DL QSD + LH E
Sbjct: 56 --IGQVAIKLFKGFGAKVIAYDPYPMKGDHPD---FDYVSLEDLFKQSDVIDLHVPGIEQ 110
Query: 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQG 303
N H+INE M+PGA ++NTAR L+D ++ + LK G++ +D +E E ++
Sbjct: 111 NTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNL 170
Query: 304 N------------LKDAPNILCTPHAAFY 320
L PN++ +PH A+Y
Sbjct: 171 AKHGSFKDPLWDELLGMPNVVLSPHIAYY 199
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 75.0 bits (184), Expect = 4e-17
Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 35/123 (28%)
Query: 76 MWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLC 135
+T E+L K L+ I + +G+D++ ++ V G
Sbjct: 34 AALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPPHVT-VAGNAGSNGYGNERVWRQ 92
Query: 136 LILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAK 195
+++ R L G +A R
Sbjct: 93 MVMEAVR----------------------------------NLITYATGGRPRNIAKRED 118
Query: 196 AFG 198
G
Sbjct: 119 YIG 121
|
| >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Score = 76.2 bits (187), Expect = 9e-17
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 10/114 (8%)
Query: 52 VAFCDAQSTSEIHEKVLNEAVGALMW--HTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109
V D + E+ L +A + LT E + K K L++ + G G D++D++
Sbjct: 71 VVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQ 130
Query: 110 AAGELGIAVCNVPGYGVEEVADTTLC--------LILNLYRRTYWLANMVREGK 155
+A + + V V + R +V+ G
Sbjct: 131 SAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGA 184
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Score = 74.8 bits (182), Expect = 4e-16
Identities = 60/203 (29%), Positives = 89/203 (43%), Gaps = 21/203 (10%)
Query: 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGS 188
+A+ + R+ + V P RE +R +G+VG G IG
Sbjct: 4 IAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGRE-------VRDQVVGVVGTGHIGQ 56
Query: 189 AVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLI 248
+ FG VI YD + +EK V +L DL Q+D +SLH N H+I
Sbjct: 57 VFMQIMEGFGAKVITYDIFRNPELEKKG--YYVDSLDDLYKQADVISLHVPDVPANVHMI 114
Query: 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQG----- 303
N+ +I +M+ +VN +RG LVD D++ L G+I A+DV+E E +
Sbjct: 115 NDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKE 174
Query: 304 -------NLKDAPNILCTPHAAF 319
+L PN+L TP AF
Sbjct: 175 FPDARLADLIARPNVLVTPKTAF 197
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Score = 67.6 bits (165), Expect = 3e-14
Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 12/124 (9%)
Query: 40 SIEMPILKDVA------TVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKT- 92
E P LK+ V + D T E A G +++ + E L+
Sbjct: 10 EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVAL-AKGADGVVVYQQLDYIAETLQALADN 68
Query: 93 -LRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMV 151
+ + GVDNID+ A ELG + NVP Y A + ++
Sbjct: 69 GITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSYTTHA---VRNMVVKAFDNNLELVEG 125
Query: 152 REGK 155
+E +
Sbjct: 126 KEAE 129
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 68.6 bits (166), Expect = 4e-14
Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 13/192 (6%)
Query: 127 EEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRI 186
+ VA+ L L+L Y+R ++ G I+G+ + ++GLG I
Sbjct: 2 DAVAEFALALLLAPYKRIIQYGEKMKRGD--------YGRDVEIPLIQGEKVAVLGLGEI 53
Query: 187 GSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246
G+ V A G V + +G + +L++ L ++ LN+H
Sbjct: 54 GTRVGKILAALGAQVRGFSRTPKEGPWR-----FTNSLEEALREARAAVCALPLNKHTRG 108
Query: 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLK 306
L+ + M A VN R ++D D + LK+ A DV
Sbjct: 109 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFF 168
Query: 307 DAPNILCTPHAA 318
PN++ TP A
Sbjct: 169 SLPNVVATPWVA 180
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 65.9 bits (160), Expect = 9e-14
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 2/115 (1%)
Query: 45 ILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVD 104
L D V + D ++ + EA L+ + E L L+I+ R G G+D
Sbjct: 18 ALGDQVEVRWVDGPDRDKLLAA-VPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLD 76
Query: 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTG 159
N+DV AA G+ V N P A + R V + G
Sbjct: 77 NVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDA-VNVG 130
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 59.7 bits (144), Expect = 2e-11
Identities = 24/111 (21%), Positives = 33/111 (29%), Gaps = 8/111 (7%)
Query: 40 SIEMPILKDVA-----TVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLR 94
E+ K A T+ + E G T EK
Sbjct: 10 VDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWA-KGFDGINSLQTTPYAAGVFEKMHAYG 68
Query: 95 IIV--RIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRR 143
I G DNID+ A + GI + NVP Y V + + +L
Sbjct: 69 IKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDF 119
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.2 bits (143), Expect = 4e-11
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSD 232
I G + G G +G A + FG VI + + ++ ++ V T+ + + +
Sbjct: 22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGN 81
Query: 233 CVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN-TARGGLVDDDSLAAALKQGRIRAAALD 291
+I +QM+ A + N +D L + +D
Sbjct: 82 ----IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVD 137
Query: 292 VHE 294
+
Sbjct: 138 RYR 140
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Score = 56.9 bits (137), Expect = 1e-10
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 56 DAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKF-KTLRIIVRIGSGVDNIDVKAAGEL 114
D + T + + L+ KE +++ + ++ I G D+ID+ A
Sbjct: 30 DPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKAR 89
Query: 115 GIAVCNVPGYG---VEEVADTTLCLILNLYR 142
GI V N P E++A LI L+
Sbjct: 90 GIKVGNAPHGATQAREDMAHQANDLIDALFG 120
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 51.2 bits (122), Expect = 1e-08
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 56 DAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELG 115
A ++ E + +A + LT++ + + L I G + +D+ AA + G
Sbjct: 34 GALDDEQLKES-IRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRG 92
Query: 116 IAVCNVPGYGVEEVADTTLCLILNLYRR 143
I V N P +E + + +
Sbjct: 93 IPVFNAPFSSTQEAQENIGLEVAGKLIK 120
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 42.5 bits (98), Expect = 3e-05
Identities = 21/136 (15%), Positives = 38/136 (27%)
Query: 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLH 237
+G+VGLG IG+++A + G +I + QDL +
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62
Query: 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEP 297
E I + P A + + A + +
Sbjct: 63 LCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGI 122
Query: 298 YNVFQGNLKDAPNILC 313
+ +AP +L
Sbjct: 123 DGAEENLFVNAPYVLT 138
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Score = 40.1 bits (93), Expect = 7e-05
Identities = 10/95 (10%), Positives = 23/95 (24%)
Query: 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQS 231
++R IVG G + A G + + ++ ++
Sbjct: 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET 68
Query: 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266
S + + +N+ N
Sbjct: 69 LLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 19/142 (13%), Positives = 37/142 (26%), Gaps = 5/142 (3%)
Query: 177 TLGIVGLGRIGSAVALRAKAFGFNVIFY----DPYLPDGIEKSLGLTRVYTLQDLLFQSD 232
+ IVG+G +G + A + GF Y +P + T +
Sbjct: 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFS 62
Query: 233 CVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292
+ + I + + A + + L L + + +
Sbjct: 63 PDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAG 122
Query: 293 HE-SEPYNVFQGNLKDAPNILC 313
E S + IL
Sbjct: 123 TEKSGVEYSLDNLYEGKKVILT 144
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 501 | |||
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 100.0 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 100.0 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 100.0 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 100.0 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 100.0 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 100.0 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 100.0 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 100.0 | |
| d1ygya2 | 130 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.89 | |
| d1mx3a2 | 133 | Transcription corepressor CtbP {Human (Homo sapien | 99.87 | |
| d1dxya2 | 131 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.76 | |
| d1qp8a2 | 121 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.75 | |
| d1sc6a2 | 132 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.74 | |
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.72 | |
| d1j4aa2 | 134 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.68 | |
| d2naca2 | 186 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.66 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 99.62 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.49 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.43 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.4 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 99.38 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.3 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.24 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.08 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.01 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.97 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.88 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 98.8 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.7 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.57 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 98.52 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.52 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.49 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 98.46 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.39 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.26 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 98.23 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.16 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.15 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.09 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 98.05 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 98.04 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.04 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.01 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.96 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.87 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.75 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.74 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.68 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.64 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.62 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.59 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 97.56 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.56 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.55 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 97.3 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.3 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.29 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 97.27 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.22 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.19 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.17 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.14 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.1 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 97.09 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 97.08 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 97.07 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.03 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.99 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.97 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.93 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.84 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.82 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.82 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 96.77 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.73 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.71 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.67 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.64 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.59 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.58 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.55 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.51 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.51 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.49 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.48 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.47 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.44 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.43 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.41 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.39 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.38 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.37 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.35 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.32 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.14 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.1 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.09 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.01 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.01 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 95.98 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 95.97 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.97 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.92 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.85 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.82 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.79 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 95.77 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.72 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 95.72 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 95.71 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 95.56 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 95.53 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.51 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.51 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.43 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 95.42 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.42 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.36 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 95.35 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 95.3 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.26 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 95.21 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.19 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 95.19 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 95.18 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.16 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 95.06 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 94.98 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.97 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.86 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 94.78 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.72 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 94.64 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.64 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.58 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 94.58 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 94.51 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.49 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.44 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 94.41 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 94.33 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.23 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 94.17 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 94.14 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.13 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 94.05 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.76 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.75 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 93.68 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 93.57 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.52 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 93.48 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 93.43 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 93.37 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 93.37 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 93.31 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 93.28 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 93.27 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.26 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 93.24 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 93.22 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 93.16 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 93.14 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 93.02 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 93.0 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.94 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 92.93 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 92.76 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 92.73 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 92.72 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.69 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.69 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 92.69 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.63 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 92.59 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 92.51 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 92.45 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 92.44 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 92.42 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 92.41 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 92.38 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 92.37 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 92.33 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 92.29 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 92.29 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 92.27 | |
| d1pjca2 | 193 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 92.25 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 92.25 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 92.16 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 92.13 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.11 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 92.06 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 92.05 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 92.05 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 91.99 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.98 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 91.98 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 91.95 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 91.89 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 91.82 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 91.77 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 91.74 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 91.59 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 91.51 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 91.37 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 91.32 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 91.32 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 91.29 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 91.21 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.19 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 91.12 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 91.12 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 91.11 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 91.04 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 91.02 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 90.93 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 90.91 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 90.88 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 90.83 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.78 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 90.78 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 90.74 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 90.67 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 90.54 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 90.53 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 90.52 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 90.48 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 90.4 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 90.39 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 90.36 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 90.36 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 90.27 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 90.26 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 90.17 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 90.15 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 90.12 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 90.04 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 89.86 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.77 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 89.6 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 89.45 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 89.34 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 89.17 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 89.09 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 88.67 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 88.52 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 88.24 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 88.19 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 88.03 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 87.74 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 87.49 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 86.89 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 86.22 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 86.21 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 86.21 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 86.18 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 86.02 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 85.54 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 85.11 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 84.84 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 84.39 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 84.18 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.15 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.08 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 83.98 | |
| d2vjma1 | 427 | Formyl-CoA transferase {Oxalobacter formigenes [Ta | 83.4 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 83.33 | |
| d1tuga1 | 310 | Aspartate carbamoyltransferase catalytic subunit { | 83.26 | |
| d1mx3a2 | 133 | Transcription corepressor CtbP {Human (Homo sapien | 83.01 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 82.98 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 82.91 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 82.46 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 82.03 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 81.93 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 81.88 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 81.86 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 81.76 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 81.44 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 81.33 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 80.9 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.83 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 80.81 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 80.3 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 80.07 |
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=100.00 E-value=5.8e-51 Score=386.93 Aligned_cols=193 Identities=75% Similarity=1.233 Sum_probs=178.7
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECC
Q psy7383 127 EEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDP 206 (501)
Q Consensus 127 ~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr 206 (501)
++||||++++||+++|++..+++.+++|.|++.....+.......+|+||||||||+|+||+.+|++|++|||+|++||+
T Consensus 1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~ 80 (193)
T d1mx3a1 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP 80 (193)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence 58999999999999999999999999999987655444444556789999999999999999999999999999999999
Q ss_pred CCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 207 YLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 207 ~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+.........++....++++++++||+|++|||+|++|++|||++.|++||++++|||+|||++||++||+++|++|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~ 160 (193)
T d1mx3a1 81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR 160 (193)
T ss_dssp TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence 87766666667777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCeEEecCCCC
Q psy7383 287 AAALDVHESEPYNVFQGNLKDAPNILCTPHAAF 319 (501)
Q Consensus 287 GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg 319 (501)
||+||||+.||++..++|||++|||++|||+||
T Consensus 161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~ 193 (193)
T d1mx3a1 161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 193 (193)
T ss_dssp EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence 999999999998755789999999999999997
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=7.4e-50 Score=376.20 Aligned_cols=184 Identities=36% Similarity=0.585 Sum_probs=170.0
Q ss_pred CchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEE
Q psy7383 125 GVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY 204 (501)
Q Consensus 125 ~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~ 204 (501)
|+.+||||++++||++.|++..+++.++++.|.+.. ....++.|+++||||+|.||+.+|+++++|||+|++|
T Consensus 1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~-------~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~ 73 (184)
T d1ygya1 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSS-------FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAY 73 (184)
T ss_dssp SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG-------CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEE
T ss_pred CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc-------cccccccceeeeeccccchhHHHHHHhhhccceEEee
Confidence 568999999999999999999999999999985321 1235799999999999999999999999999999999
Q ss_pred CCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 205 DPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 205 dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
|++.........+++. .+++|++++||+|++|||+|++|++|||++.|++||++++|||+|||++|||+||+++|++|+
T Consensus 74 d~~~~~~~~~~~~~~~-~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~ 152 (184)
T d1ygya1 74 DPYVSPARAAQLGIEL-LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGH 152 (184)
T ss_dssp CTTSCHHHHHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSS
T ss_pred cCCCChhHHhhcCcee-ccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCc
Confidence 9988766666666664 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCC
Q psy7383 285 IRAAALDVHESEPYNVFQGNLKDAPNILCTPHAA 318 (501)
Q Consensus 285 I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiA 318 (501)
|.||+||||++||++ ++|||++|||++|||||
T Consensus 153 i~~a~lDV~~~EP~~--~~~l~~~~nviiTPHIG 184 (184)
T d1ygya1 153 VRAAGLDVFATEPCT--DSPLFELAQVVVTPHLG 184 (184)
T ss_dssp EEEEEESSCSSSSCS--CCGGGGCTTEEECSSCS
T ss_pred EeEEEEeCCCCCCCC--CchHhcCCCEEECCCCC
Confidence 999999999999985 79999999999999996
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=100.00 E-value=4.3e-48 Score=366.51 Aligned_cols=189 Identities=32% Similarity=0.396 Sum_probs=167.9
Q ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEEC
Q psy7383 126 VEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYD 205 (501)
Q Consensus 126 a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~d 205 (501)
+.+||||+|+|||+++|++.++++.++++.|.... ......++++|+||||||+|+||+.+|+++++|||+|++||
T Consensus 2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~----~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d 77 (191)
T d1gdha1 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWE----PLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFD 77 (191)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC----TTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCC----ccccccceecccceEEeecccchHHHHHHHHhhcccccccc
Confidence 36899999999999999999999999999985321 11122468999999999999999999999999999999999
Q ss_pred CCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 206 PYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 206 r~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
++... ............++++++++||+|++|||+|++|++|||++.|++||+|++|||+|||++|||+||+++|++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~ 157 (191)
T d1gdha1 78 THRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGR 157 (191)
T ss_dssp SSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTS
T ss_pred ccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCC
Confidence 87653 23333344555689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCC
Q psy7383 285 IRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFY 320 (501)
Q Consensus 285 I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~ 320 (501)
|.||+||||+.||.+ ++|||++|||++|||+|+.
T Consensus 158 i~~a~lDV~~~EP~~--~~~l~~~~nvi~TPHiasa 191 (191)
T d1gdha1 158 LAYAGFDVFAGEPNI--NEGYYDLPNTFLFPHIGSA 191 (191)
T ss_dssp EEEEEESCCTTTTSC--CTTGGGCTTEEECSSCTTC
T ss_pred ceEEEEECCCCCCCC--CchHHcCCCEEECCccccC
Confidence 999999999999953 7899999999999999963
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=100.00 E-value=1.2e-47 Score=361.80 Aligned_cols=186 Identities=33% Similarity=0.425 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCC
Q psy7383 128 EVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 128 aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
+||||+|+++|+++|++..+++.++++.|.... .....++|+|++|||||+|+||+.+|++|++|||+|++||+.
T Consensus 2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~-----~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~ 76 (188)
T d2naca1 2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD-----CVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRH 76 (188)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH-----HHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSS
T ss_pred cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcc-----cCCcceeccccceeeccccccchhhhhhhhccCceEEEEeec
Confidence 799999999999999999999999999985311 112246799999999999999999999999999999999987
Q ss_pred CCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 208 LPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 208 ~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
... ......++....+++|++++||+|++|||+|++|++|||++.|++||+|++|||+|||++||++||+++|++|+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ 156 (188)
T d2naca1 77 RLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA 156 (188)
T ss_dssp CCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred cccccccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCce
Confidence 643 4445566777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCeEEecCCCC
Q psy7383 287 AAALDVHESEPYNVFQGNLKDAPNILCTPHAAF 319 (501)
Q Consensus 287 GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg 319 (501)
||+||||++||++. ++|||.+|||++|||+||
T Consensus 157 ga~lDV~~~EP~~~-~~~l~~~~nv~~TPHiaG 188 (188)
T d2naca1 157 GYAGDVWFPQPAPK-DHPWRTMPYNGMTPHISG 188 (188)
T ss_dssp EEEESCCSSSSCCT-TCGGGTSTTBCCCCSCTT
T ss_pred eEEEeCCCCCCCCC-CChHHcCCCeEEccccCc
Confidence 99999999999987 899999999999999997
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=100.00 E-value=4.8e-48 Score=368.10 Aligned_cols=186 Identities=32% Similarity=0.493 Sum_probs=164.7
Q ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEEC
Q psy7383 126 VEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYD 205 (501)
Q Consensus 126 a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~d 205 (501)
.++||||++++||++.|++..+++.++++.|.+.. ....++|.||||||||+|+||+.+|++|++|||+|++||
T Consensus 2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~------~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d 75 (199)
T d1dxya1 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG------TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYD 75 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHT------CCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCccc------CcccccccceeeeeeecccccccccccccccceeeeccC
Confidence 47899999999999999999999999999985311 112368999999999999999999999999999999999
Q ss_pred CCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 206 PYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 206 r~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
++...... ..+. ..++++++++||+|++|||+|++|++|||++.|++||++++|||+|||++||++||+++|++|+|
T Consensus 76 ~~~~~~~~--~~~~-~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i 152 (199)
T d1dxya1 76 PYPMKGDH--PDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 152 (199)
T ss_dssp SSCCSSCC--TTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred Cccchhhh--cchh-HHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCc
Confidence 98654322 2233 34899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCCC------------CCCCCCCCCCeEEecCCCCC
Q psy7383 286 RAAALDVHESEPYNV------------FQGNLKDAPNILCTPHAAFY 320 (501)
Q Consensus 286 ~GAaLDVfe~EPl~~------------~~~pL~~~pNVilTPHiAg~ 320 (501)
.||+||||++||++. ..++||.+|||++|||+|||
T Consensus 153 ~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy 199 (199)
T d1dxya1 153 AGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY 199 (199)
T ss_dssp EEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred ceEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence 999999999999621 12468899999999999997
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=100.00 E-value=1.7e-47 Score=364.20 Aligned_cols=184 Identities=32% Similarity=0.445 Sum_probs=163.7
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECC
Q psy7383 127 EEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDP 206 (501)
Q Consensus 127 ~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr 206 (501)
++||||++++||+++|++..+++.+++++|.+... ..++|+||||||||||+||+.+|++|++|||+|++||+
T Consensus 2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~-------~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~ 74 (197)
T d1j4aa1 2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPT-------IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDI 74 (197)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTC-------CBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCC-------cCccccCCeEEEecccccchhHHHhHhhhcccccccCc
Confidence 68999999999999999999999999998753321 13679999999999999999999999999999999999
Q ss_pred CCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 207 YLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 207 ~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+...... ..++ ...++++++++||+|++|||+|++|++||+++.|++||++++|||+|||++||++||+++|++|+|.
T Consensus 75 ~~~~~~~-~~~~-~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~ 152 (197)
T d1j4aa1 75 FRNPELE-KKGY-YVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 152 (197)
T ss_dssp SCCHHHH-HTTC-BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred ccccccc-ccee-eeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccch
Confidence 8764333 2233 3568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCC------------CCCCCCCCCCeEEecCCCC
Q psy7383 287 AAALDVHESEPYNV------------FQGNLKDAPNILCTPHAAF 319 (501)
Q Consensus 287 GAaLDVfe~EPl~~------------~~~pL~~~pNVilTPHiAg 319 (501)
||+||||+.||... .+++||.+|||++|||+||
T Consensus 153 ~a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~ 197 (197)
T d1j4aa1 153 GYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF 197 (197)
T ss_dssp EEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred heeeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence 99999999996421 1357899999999999996
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.3e-47 Score=356.73 Aligned_cols=185 Identities=34% Similarity=0.470 Sum_probs=158.7
Q ss_pred CchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEE
Q psy7383 125 GVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY 204 (501)
Q Consensus 125 ~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~ 204 (501)
|+++||||+++++|++.|++..+++.++++.|.... ...++|.+++|||||+|.||+.+|+++++|||+|++|
T Consensus 1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~-------~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~ 73 (188)
T d1sc6a1 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA-------AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFY 73 (188)
T ss_dssp THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC------------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccc-------cccccccceEEEEeecccchhhhhhhcccccceEeec
Confidence 678999999999999999999999999999886432 1235799999999999999999999999999999999
Q ss_pred CCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 205 DPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 205 dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
|++...... ....+.+++|++++||+|++|||+|++|++|||++.|++||++++|||+|||++||++||+++|++++
T Consensus 74 d~~~~~~~~---~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~ 150 (188)
T d1sc6a1 74 DIENKLPLG---NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKH 150 (188)
T ss_dssp CSSCCCCCT---TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTS
T ss_pred cccccchhh---hhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCC
Confidence 987543322 23445689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCCC---CCCCCCCCCCeEEecCCCC
Q psy7383 285 IRAAALDVHESEPYNV---FQGNLKDAPNILCTPHAAF 319 (501)
Q Consensus 285 I~GAaLDVfe~EPl~~---~~~pL~~~pNVilTPHiAg 319 (501)
+.+|+||||+.||... ..+|||++|||++|||+||
T Consensus 151 ~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d1sc6a1 151 LAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG 188 (188)
T ss_dssp EEEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred ceEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence 9999999999999842 2568999999999999997
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=9.5e-47 Score=354.40 Aligned_cols=181 Identities=24% Similarity=0.308 Sum_probs=163.0
Q ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCCEEEEEC
Q psy7383 126 VEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYD 205 (501)
Q Consensus 126 a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~d 205 (501)
+++||||++++||+++|++..+++.+++++|.+... ..+|.||||||||+|.||+.+|+++++|||+|++||
T Consensus 1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~--------~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d 72 (181)
T d1qp8a1 1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE--------IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFS 72 (181)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSC--------CCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEEC
T ss_pred CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCC--------CCcccCceEEEeccccccccceeeeecccccccccc
Confidence 578999999999999999999999999999864321 235999999999999999999999999999999999
Q ss_pred CCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 206 PYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 206 r~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
++..+.. .....+++|++++||+|++|||+|++|+++||++.|++||++++|||+|||++||+++|+++|++++|
T Consensus 73 ~~~~~~~-----~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i 147 (181)
T d1qp8a1 73 RTPKEGP-----WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQ 147 (181)
T ss_dssp SSCCCSS-----SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTT
T ss_pred ccccccc-----eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcE
Confidence 9865432 22345899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCC
Q psy7383 286 RAAALDVHESEPYNVFQGNLKDAPNILCTPHAAF 319 (501)
Q Consensus 286 ~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg 319 (501)
.+|++|||+.||..+.++|||++|||++|||+||
T Consensus 148 ~~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG 181 (181)
T d1qp8a1 148 FIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG 181 (181)
T ss_dssp CEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred EEEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence 9999999976543333789999999999999997
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=2.6e-23 Score=184.10 Aligned_cols=127 Identities=24% Similarity=0.292 Sum_probs=110.1
Q ss_pred CCEEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccc
Q psy7383 28 RPLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNID 107 (501)
Q Consensus 28 kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID 107 (501)
.|||++++..+ +..++.|++..++.+.+..+.+|+.+.+ .+++++++.....+++++++++|+||+|++.|+|+||||
T Consensus 2 Mpkvli~~~~~-~~~~~~L~~~~~v~~~~~~~~~el~~~~-~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~ID 79 (130)
T d1ygya2 2 LPVVLIADKLA-PSTVAALGDQVEVRWVDGPDRDKLLAAV-PEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVD 79 (130)
T ss_dssp CCEEEECSSCC-GGGGTTSCSSSEEEECCTTSHHHHHHHG-GGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTTBC
T ss_pred CCEEEEECCCC-HHHHHHHhCCcEEEECCCCCHHHHHHHc-CCCEEEEEcCcccchHHHHhhcccceEEeeecccccchh
Confidence 47899888654 3456678888899998888888887665 678887777677899999999999999999999999999
Q ss_pred hhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCc
Q psy7383 108 VKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKK 156 (501)
Q Consensus 108 ~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w 156 (501)
+++|+++||.|+|+||+++.+||||+++|||+++|++..+++.+|+|+|
T Consensus 80 l~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~ 128 (130)
T d1ygya2 80 VDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN 128 (130)
T ss_dssp HHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred HHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence 9999999999999999999999999999999999999877666666655
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.87 E-value=7.2e-23 Score=182.44 Aligned_cols=125 Identities=69% Similarity=1.013 Sum_probs=113.8
Q ss_pred CEEEEecCCCCCcccccccccceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccch
Q psy7383 29 PLVALLDGRDCSIEMPILKDVATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDV 108 (501)
Q Consensus 29 p~IvvLd~~~~~~e~~~L~~~~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~ 108 (501)
|+|+++|..++..|++.|++.+++.+++..+++|+.++.++++++++++...++++++|+++|+||+|+++|+|+||||+
T Consensus 2 P~v~~ld~~d~~~e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d~iD~ 81 (133)
T d1mx3a2 2 PLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDI 81 (133)
T ss_dssp CEEEESSCSCCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCTTBCH
T ss_pred CEEEEecCCcchhhHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcccEee
Confidence 78999999898899999999999999999888888888888888888888889999999999999999999999999999
Q ss_pred hhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccC
Q psy7383 109 KAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFT 158 (501)
Q Consensus 109 ~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~ 158 (501)
++|+++||.|+|+||++. +||||+++|||+++|++.+.. +|+|..
T Consensus 82 ~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~----~g~~~~ 126 (133)
T d1mx3a2 82 KSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAI----TGRIPD 126 (133)
T ss_dssp HHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHH----HSCTTT
T ss_pred eeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHH----hccccc
Confidence 999999999999999987 579999999999999997654 466643
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.76 E-value=1.1e-19 Score=160.28 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=92.6
Q ss_pred EEEEecCCCCCccccccccc-----ceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCC--CCcEEEEcCcc
Q psy7383 30 LVALLDGRDCSIEMPILKDV-----ATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFK--TLRIIVRIGSG 102 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~-----~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p--~LK~I~~~gaG 102 (501)
||++++... .+.+.|+++ .++.+.+....++..+. .+++|+++++...++++++|++++ +||+|++.|+|
T Consensus 2 KIl~~~~~~--~e~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG 78 (131)
T d1dxya2 2 KIIAYGARV--DEIQYFKQWAKDTGNTLEYHTEFLDENTVEW-AKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG 78 (131)
T ss_dssp EEEECSCCT--TTHHHHHHHHHHHCCEEEECSSCCCTTGGGG-GTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred EEEEEecCc--CcHHHHHHHHHHcCeEEEEcCCCCCHHHHHH-hcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccc
Confidence 477776543 455666543 35666666555555543 467888877777789999999865 79999999999
Q ss_pred ccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHH
Q psy7383 103 VDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYW 146 (501)
Q Consensus 103 ~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~ 146 (501)
+||||+++|+++||.|+|+|++++++||||++++||++.|++..
T Consensus 79 ~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~ 122 (131)
T d1dxya2 79 TDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTK 122 (131)
T ss_dssp CTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHH
Confidence 99999999999999999999999999999999999999999754
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.75 E-value=1.6e-20 Score=164.38 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=81.3
Q ss_pred cceEEEEeccCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHH
Q psy7383 70 EAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLAN 149 (501)
Q Consensus 70 ~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~ 149 (501)
+++++++| .++++.++++|+||||++.++|+||||++.+. ++|.|+|++|+++.+||||++++||+++|+
T Consensus 31 ~~d~~l~~---~~~~~~l~~~~~Lk~i~~~~aG~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~------ 100 (121)
T d1qp8a2 31 NVEAALVS---RITAEELAKMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN------ 100 (121)
T ss_dssp TBCCCCBS---CCCHHHHHHCTTCCCEEBSSSCCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH------
T ss_pred ccceeeee---ccCHHHHhcCCCceEEEecccCcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC------
Confidence 44544444 58999999999999999999999999999985 699999999999999999999999999873
Q ss_pred HHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCC
Q psy7383 150 MVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFG 198 (501)
Q Consensus 150 ~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG 198 (501)
++|+|+|.||+++|+|+++||
T Consensus 101 ----------------------------l~i~G~G~iG~~iA~r~~a~G 121 (121)
T d1qp8a2 101 ----------------------------LITYATGGRPRNIAKREDYIG 121 (121)
T ss_dssp ----------------------------HHHHHTTSCCSCBCCGGGTC-
T ss_pred ----------------------------EEEEcCCHHHHHHHHHHHhcC
Confidence 479999999999999999997
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=2.3e-18 Score=152.65 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=90.2
Q ss_pred CCCCEEEEecCCCCCcccccccccc--eEEEcCC-CChHHHHHHhhccceEEEEeccCCCCHHHHhcCCCCcEEEEcCcc
Q psy7383 26 QTRPLVALLDGRDCSIEMPILKDVA--TVAFCDA-QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSG 102 (501)
Q Consensus 26 ~~kp~IvvLd~~~~~~e~~~L~~~~--~v~~~~~-~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p~LK~I~~~gaG 102 (501)
+.|.||++++..+ +..++.|++.+ .+.+.+. .+.+++.+. +.+++++++.....+++++|+++|+||+|+++|+|
T Consensus 2 k~kmKILv~d~i~-~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~-~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~gvG 79 (132)
T d1sc6a2 2 KDKIKFLLVEGVH-QKALESLRAAGYTNIEFHKGALDDEQLKES-IRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIG 79 (132)
T ss_dssp CSSCCEEECSCCC-HHHHHHHHHTTCCCEEECSSCCCHHHHHHH-TTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSC
T ss_pred CCCCEEEEECCCC-HHHHHHHHhCCCEEEEeCCCCCCHHHHHHh-hcCCcEEEEecccccChhhhhccccceeEEEeccc
Confidence 4567899998864 34456676543 3444333 356666655 46788877666678999999999999999999999
Q ss_pred ccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhh
Q psy7383 103 VDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRR 143 (501)
Q Consensus 103 ~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~ 143 (501)
|||||+++|+++||.|+|+||+++.+||||+++||++..|+
T Consensus 80 ~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~~~~~ 120 (132)
T d1sc6a2 80 TNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIK 120 (132)
T ss_dssp CTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999876666544333
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.72 E-value=1.1e-17 Score=147.52 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=90.2
Q ss_pred CCEEEEecCCCCCcccccccccceEEEcCC---CChHHHHHHhhccceEEEEeccCCCCHHHHhcCC-CCcEEEEcCccc
Q psy7383 28 RPLVALLDGRDCSIEMPILKDVATVAFCDA---QSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFK-TLRIIVRIGSGV 103 (501)
Q Consensus 28 kp~IvvLd~~~~~~e~~~L~~~~~v~~~~~---~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p-~LK~I~~~gaG~ 103 (501)
||+|+++.... +.-+..|++.+++.+... .+.+|+.+.+ ++++++++....++++++|+++| +||+|++.|+|+
T Consensus 1 K~kVlit~~~~-~~~~~~l~~~~~v~~~~~~~~~s~~el~~~~-~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~ 78 (129)
T d1gdha2 1 KKKILITWPLP-EAAMARARESYDVIAHGDDPKITIDEMIETA-KSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGF 78 (129)
T ss_dssp CCEEEESSCCC-HHHHHHHHTTSEEEECCSTTCCCHHHHHHHH-TTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCC
T ss_pred CCEEEEeCCCC-HHHHHHHHcCCcEEEeCCCCCCCHHHHHHHh-cCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCC
Confidence 67888876543 233456777777776543 2566776554 67888887777789999999997 799999999999
Q ss_pred cccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhh
Q psy7383 104 DNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRR 143 (501)
Q Consensus 104 D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~ 143 (501)
||||+++|+++||+|+|+||+++++|||+++.+|+.+++.
T Consensus 79 d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~l 118 (129)
T d1gdha2 79 DHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDAL 118 (129)
T ss_dssp TTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999777655555543
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=99.68 E-value=1.1e-17 Score=148.28 Aligned_cols=120 Identities=25% Similarity=0.307 Sum_probs=93.1
Q ss_pred EEEEecCCCCCccccccccc------ceEEEcCCCChHHHHHHhhccceEEEEeccCCCCHHHHhcCC--CCcEEEEcCc
Q psy7383 30 LVALLDGRDCSIEMPILKDV------ATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFK--TLRIIVRIGS 101 (501)
Q Consensus 30 ~IvvLd~~~~~~e~~~L~~~------~~v~~~~~~~~~ei~~~~l~~a~~vli~~~~~l~~e~l~~~p--~LK~I~~~ga 101 (501)
||+++...+ +|.+.++++ .++...+....+++.+ ...+++++++.....+++++|++++ +||+|++.|+
T Consensus 2 KI~~f~~~~--~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~-~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~v 78 (134)
T d1j4aa2 2 KIFAYAIRE--DEKPFLKEWEDAHKDVEVEYTDKLLTPETVA-LAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV 78 (134)
T ss_dssp EEEECSCCG--GGHHHHHHHHHTCTTSEEEECSSCCCTTTGG-GGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred eEEEEeccc--ccHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccC
Confidence 688875543 566665433 2566666655566654 4567888887777889999999764 6999999999
Q ss_pred cccccchhhhhhcCeEEeecCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHcCCccC
Q psy7383 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFT 158 (501)
Q Consensus 102 G~D~ID~~aa~~~GI~Vtn~pg~~a~aVAE~alal~L~l~R~~~~~~~~~~~g~w~~ 158 (501)
|+||||+++|+++||.|+|+|+| +||||++++||+++|++. ..+.+++|+.
T Consensus 79 G~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~---~~~~~~k~~e 129 (134)
T d1j4aa2 79 GVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNN---LELVEGKEAE 129 (134)
T ss_dssp CCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHH---HHHHTTCCCS
T ss_pred CcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHh---HHHhhhhccc
Confidence 99999999999999999999998 489999999999999863 4555666553
|
| >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.66 E-value=1.2e-17 Score=155.25 Aligned_cols=112 Identities=20% Similarity=0.199 Sum_probs=84.5
Q ss_pred ccccc-ceEE-EcCCCChHHHHHHhhccceEEEEec--cCCCCHHHHhcCCCCcEEEEcCccccccchhhhhhcCeEEee
Q psy7383 45 ILKDV-ATVA-FCDAQSTSEIHEKVLNEAVGALMWH--TIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCN 120 (501)
Q Consensus 45 ~L~~~-~~v~-~~~~~~~~ei~~~~l~~a~~vli~~--~~~l~~e~l~~~p~LK~I~~~gaG~D~ID~~aa~~~GI~Vtn 120 (501)
+|++. .++. +.+...+++..++.+.++|++++.. ...+++|+|+++|+||+|+++++|+||||+++|+++||.|+|
T Consensus 62 ~Le~~GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI~V~n 141 (186)
T d2naca2 62 YLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAE 141 (186)
T ss_dssp HHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEE
T ss_pred HHHHCCCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCCEEEE
Confidence 35543 3555 4444444444455567888877653 457999999999999999999999999999999999999999
Q ss_pred cCCCCchhhHHHH--------HHHHHHHHhhHHHHHHHHHcCCc
Q psy7383 121 VPGYGVEEVADTT--------LCLILNLYRRTYWLANMVREGKK 156 (501)
Q Consensus 121 ~pg~~a~aVAE~a--------lal~L~l~R~~~~~~~~~~~g~w 156 (501)
++|+|+.+||||+ +++++...|++...+..+++|+|
T Consensus 142 ~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~ 185 (186)
T d2naca2 142 VTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185 (186)
T ss_dssp CTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence 9999999999999 55666666665444444444443
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.5e-16 Score=144.01 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=97.5
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
.|.||+++|+|||.||+.+|++|++|||+|++||..+...++......++.++++++..+|+|+++. .++++|+.+
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaT----Gn~~vI~~e 96 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTT----GCIDIILGR 96 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECS----SCSCSBCHH
T ss_pred eecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecC----CCccchhHH
Confidence 4899999999999999999999999999999999987666555544444568999999999998764 478999999
Q ss_pred HHhcCCCCcEEEEcC-CCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 252 TIKQMRPGAFLVNTA-RGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 252 ~l~~MK~gAilINva-RG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
.|++||+|++|.|++ +..-+|.++|.+...+.+.....+|.|+
T Consensus 97 h~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~ 140 (163)
T d1li4a1 97 HFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR 140 (163)
T ss_dssp HHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence 999999999999997 4555899999886555444444556554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.49 E-value=3.6e-14 Score=127.82 Aligned_cols=115 Identities=18% Similarity=0.259 Sum_probs=100.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~ 252 (501)
++|||||+|.||+.+|++|...|++|++||++... +...+.+.....+.+|++++||+|++|+|..++.+.++. ...
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 47999999999999999999999999999998653 333456777778999999999999999999988888763 458
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+..++++.+|||++....-+...+.+.+++..+. ++|.
T Consensus 81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (161)
T d1vpda2 81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLDA 118 (161)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eecc
Confidence 8999999999999999988889999999999887 6775
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.43 E-value=6.2e-13 Score=119.33 Aligned_cols=149 Identities=19% Similarity=0.141 Sum_probs=101.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCc-eecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGL-TRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv-~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
++|||||+|.||+.+|+.|+..|++|++|||+... +..++.++ ....+..+.+++||+|++++|.. ++..++ ++..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~-~~~~vl-~~l~ 78 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQ-LILPTL-EKLI 78 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHH-HHHHHH-HHHG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHh-hhhhhh-hhhh
Confidence 47999999999999999999999999999987532 23344453 23334557889999999999954 677777 4678
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHH
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTEL 328 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~ 328 (501)
..+++++++++++......... .+.+....+..-.+...+..........|+....+++||+-++ +++..+.+
T Consensus 79 ~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~-~~~~~~~v 151 (165)
T d2f1ka2 79 PHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT-DPEQLACL 151 (165)
T ss_dssp GGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC-CHHHHHHH
T ss_pred hhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCC-CHHHHHHH
Confidence 8899999999998765333333 4444444444333333222221112346778888999998664 34444433
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.40 E-value=3.8e-13 Score=121.24 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=99.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--HHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN--EFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~--~~~ 252 (501)
++|||||+|.||..||++|...|++|.+||++... ......+.....++.|++..+|+|+++++..+..+.++. ...
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~ 81 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 81 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence 57999999999999999999999999999988643 233456666677899999999999999998888777763 457
Q ss_pred HhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 253 IKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 253 l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+..+++|.++||++....-+...+.+.+++..+. ++|.
T Consensus 82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da 119 (162)
T d3cuma2 82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA 119 (162)
T ss_dssp HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence 8889999999999999999999999999999886 7886
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=99.38 E-value=5.1e-13 Score=121.54 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=86.6
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
-|.||++.|+|||.+|+.+|++|+++|++|++++..+-..++......++.+++|+++.+|+|+.+.. .+++|+.+
T Consensus 20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTG----n~~vI~~~ 95 (163)
T d1v8ba1 20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTG----NVDVIKLE 95 (163)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCS----SSSSBCHH
T ss_pred eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCC----CCccccHH
Confidence 38999999999999999999999999999999998765555444333345699999999999998765 46799999
Q ss_pred HHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q psy7383 252 TIKQMRPGAFLVNTARGGL-VDDDSLAA 278 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~v-Vde~aL~~ 278 (501)
.|.+||+|++|.|++.... +|.++|.+
T Consensus 96 h~~~MKdgaIl~N~GHfd~EIdv~~L~~ 123 (163)
T d1v8ba1 96 HLLKMKNNAVVGNIGHFDDEIQVNELFN 123 (163)
T ss_dssp HHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred HHHHhhCCeEEEeccccchhhhhHHHHh
Confidence 9999999999999999765 56666553
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.30 E-value=2e-11 Score=109.41 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=106.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc-hhhhhcCc--eecCCHHHH-HhcCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD-GIEKSLGL--TRVYTLQDL-LFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~-~~~~~~gv--~~~~sLdel-L~~sDvVil~lPlt~~T~~lI~ 249 (501)
|+|+|||+|.||..+|+.|+..|. +|++||++... +..+..+. ....+.++. ...+|+|++++|. .++..++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl- 79 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA- 79 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence 579999999999999999998885 89999987532 33344443 223344443 4589999999994 3455555
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCT 326 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~ 326 (501)
++....+++++++++++.....-.+++.+.+...-+.+--+.-.+..-....+..|++-.++++|||-. .+.+..+
T Consensus 80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~-~~~~~~~ 155 (171)
T d2g5ca2 80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK-TDKKRLK 155 (171)
T ss_dssp HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSS-SCHHHHH
T ss_pred hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCC-CCHHHHH
Confidence 457788999999999999777667777777877666666666655443322356788889999999966 3444444
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.24 E-value=6.9e-12 Score=114.20 Aligned_cols=115 Identities=15% Similarity=0.191 Sum_probs=93.7
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh-hhhc--------CceecCCHHHHHhcCCEEEEeccCchhhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI-EKSL--------GLTRVYTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~-~~~~--------gv~~~~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
.++|||||+|.||..||++|...|++|++|||+.+... ..+. +.....++.+++..+|+++++++..+++.
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 35799999999999999999999999999999875321 1111 12222345567788999999999988887
Q ss_pred hcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.++ ...+..+++|.++||++....-+...+.+.+.+..+. ++|.
T Consensus 82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~lda 125 (176)
T d2pgda2 82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVGS 125 (176)
T ss_dssp HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEE
T ss_pred HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eecc
Confidence 765 5789999999999999999999999999999999887 7774
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.08 E-value=8.8e-11 Score=104.69 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=87.9
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
||||||+|.||..||++|...|..| +|++...+. .....+.. . +..+.+.++|++++++|..++..... ...+.
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~ 77 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSE-A-VPLERVAEARVIFTCLPTTREVYEVA-EALYP 77 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCE-E-CCGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCc-c-cccccccceeEEEecccchhhhhhhh-ccccc
Confidence 6999999999999999999888866 566665432 22222332 2 34566778999999999887766654 57899
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 255 QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 255 ~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.++++.++||++....-....+.+.+++..+. ++|.
T Consensus 78 ~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda 113 (156)
T d2cvza2 78 YLREGTYWVDATSGEPEASRRLAERLREKGVT--YLDA 113 (156)
T ss_dssp TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred cccccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence 99999999999999998999999999999887 7786
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.01 E-value=3.2e-10 Score=100.43 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=81.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIK 254 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~ 254 (501)
++|||||+|.||+.+|++|+..|++|++||+..... ..+..++....+++|++.+||+|++++|..... .++ .+...
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~-~~~-~~~~~ 78 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVAL-GAA-RRAGR 78 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHH-HHH-HHHHT
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHH-HHH-Hhhcc
Confidence 479999999999999999999999999999876542 222233333457899999999999999965433 332 22222
Q ss_pred cCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 255 QMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 255 ~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
..+.++|+++.........+.+.+++.+ ++|+
T Consensus 79 --~~~~~~id~st~~p~~~~~l~~~~~~~~----~~d~ 110 (152)
T d1i36a2 79 --HVRGIYVDINNISPETVRMASSLIEKGG----FVDA 110 (152)
T ss_dssp --TCCSEEEECSCCCHHHHHHHHHHCSSSE----EEEE
T ss_pred --cCCceeeccCcCCHHHHHHHHHHHhccC----CCcc
Confidence 2368899999988777788888876643 4666
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.97 E-value=8.7e-10 Score=98.08 Aligned_cols=100 Identities=26% Similarity=0.321 Sum_probs=82.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
++|||||+|+||+++++.|...|.+|++|+|+... ...+..++....+.+|++.+||+|+++++ ++. + .+.+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~---~-~~vl 74 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQL---F-ETVL 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGG---H-HHHH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHh---H-HHHh
Confidence 47999999999999999999999999999987543 33355688777899999999999999996 321 1 4677
Q ss_pred hcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 254 KQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 254 ~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
+.++++.++|++.-| +..+.|.+.|..+
T Consensus 75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~~ 102 (152)
T d2ahra2 75 KPLHFKQPIISMAAG--ISLQRLATFVGQD 102 (152)
T ss_dssp TTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred hhcccceeEeccccc--ccHHHHHhhhccc
Confidence 889999999999988 6777888877543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.88 E-value=2.8e-09 Score=96.26 Aligned_cols=114 Identities=24% Similarity=0.339 Sum_probs=89.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhcC-------ceecCCHHHH---HhcCCEEEEeccCchh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSLG-------LTRVYTLQDL---LFQSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~g-------v~~~~sLdel---L~~sDvVil~lPlt~~ 243 (501)
++|||||+|.||..||++|...|++|.+|||+.++. +.+... .+...+.+++ +..++.++++++....
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 579999999999999999999999999999976432 111111 1222344444 5688999999987777
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
....+ ...+..++++.++||++....-+...+.+.|.+..+. +||.
T Consensus 82 ~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~--~lda 127 (178)
T d1pgja2 82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR--FLGM 127 (178)
T ss_dssp HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE--EEEE
T ss_pred hhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhccee--Eecc
Confidence 77666 4678889999999999999999999999999998887 5664
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=98.80 E-value=5.2e-09 Score=92.06 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=71.9
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
..=++|+||| +|.||+.+|++|+..|++|.+||+.... ..++.+..+|++++++|.. .+.. +-.+
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~------------~~~~~~~~~~~v~~~~~~~-~~~~-v~~~ 72 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------VAESILANADVVIVSVPIN-LTLE-TIER 72 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------GHHHHHTTCSEEEECSCGG-GHHH-HHHH
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc------------ccchhhhhccccccccchh-hhee-eeec
Confidence 3447999999 9999999999999999999999986421 3456788999999999854 3333 3467
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHH
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAA 279 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~a 279 (501)
.+..+++++++||++.-...-.+++.+.
T Consensus 73 ~~~~~~~~~iiiD~~Svk~~~~~~~~~~ 100 (152)
T d2pv7a2 73 LKPYLTENMLLADLTSVKREPLAKMLEV 100 (152)
T ss_dssp HGGGCCTTSEEEECCSCCHHHHHHHHHH
T ss_pred ccccccCCceEEEecccCHHHHHHHHHH
Confidence 8899999999999987543333344333
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.70 E-value=3.4e-08 Score=88.03 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=78.2
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcC---------------ceecCCHHHHHhcCCEEEEec
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLG---------------LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~g---------------v~~~~sLdelL~~sDvVil~l 238 (501)
.|||+|||.|.||..+|..|...|++|.+||++... +.....+ .....++.|.++++|+|++++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 389999999999999999999999999999987432 1111111 122357899999999999999
Q ss_pred cCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCc
Q psy7383 239 TLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRI 285 (501)
Q Consensus 239 Plt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I 285 (501)
|.. .++.++ ++....+++++++|-. -|....+..+.+.++....
T Consensus 81 ~~~-~~~~~~-~~i~~~l~~~~~iv~~-~g~~~~~~~~~~~~~~~~~ 124 (184)
T d1bg6a2 81 PAI-HHASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRENGA 124 (184)
T ss_dssp CGG-GHHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHTTC
T ss_pred chh-HHHHHH-HHhhhccCCCCEEEEe-CCCCccHHHHHHHHHHhcC
Confidence 844 445554 5567789999988754 4444555566677766543
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.57 E-value=5.5e-08 Score=85.77 Aligned_cols=103 Identities=25% Similarity=0.350 Sum_probs=74.6
Q ss_pred CeEEeeccchHHHHHHHHHHhCC-CEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG-FNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFT 252 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG-~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~ 252 (501)
++|||||+|+||+++++.|...| .+|.+|||+.+. ...++.++....+.++ +.+||+|+++++ |+. + .+.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk--P~~--~--~~v 73 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK--PQD--M--EAA 73 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC--HHH--H--HHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC--HHH--H--HHh
Confidence 47999999999999999876555 899999998643 3344567776656555 678999999997 321 1 233
Q ss_pred HhcCC-CCcEEEEcCCCCccCHHHHHHHHHc-CCceE
Q psy7383 253 IKQMR-PGAFLVNTARGGLVDDDSLAAALKQ-GRIRA 287 (501)
Q Consensus 253 l~~MK-~gAilINvaRG~vVde~aL~~aL~~-g~I~G 287 (501)
++.++ .+.++|.+.-| +..+.|.+.|.. .++..
T Consensus 74 ~~~l~~~~~~viS~~ag--~~~~~l~~~l~~~~~iir 108 (152)
T d1yqga2 74 CKNIRTNGALVLSVAAG--LSVGTLSRYLGGTRRIVR 108 (152)
T ss_dssp HTTCCCTTCEEEECCTT--CCHHHHHHHTTSCCCEEE
T ss_pred HHHHhhcccEEeecccC--CCHHHHHHHhCcCcceEe
Confidence 44443 57899999988 677788887743 44543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=98.52 E-value=1.3e-07 Score=88.10 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=82.5
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHHh-cCCEEEEeccCchhhhhccc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLLF-QSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL~-~sDvVil~lPlt~~T~~lI~ 249 (501)
+|.|+||+|-|||++|+.+|+.|..+|++|+++|..... ......+.+.+ +.++++. +|||++-|. +.+.|+
T Consensus 24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA-----~~~~I~ 97 (201)
T d1c1da1 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCA-----MGGVIT 97 (201)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECS-----CSCCBC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Cccccccccceeeeccc-----cccccc
Confidence 599999999999999999999999999999999976432 22334566654 6788776 799988653 468899
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
++...+|+- -+++..+.+.+.+++ ..+.|.++.|.
T Consensus 98 ~~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI~ 132 (201)
T d1c1da1 98 TEVARTLDC-SVVAGAANNVIADEA-ASDILHARGIL 132 (201)
T ss_dssp HHHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred HHHHhhhhh-heeeccCCCCcchhh-HHHHhcccceE
Confidence 999999974 466667777666554 46677777775
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.52 E-value=7.5e-08 Score=87.45 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=76.2
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcC--cee----cCCHHHHHhcCCEEEEeccC-c
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLG--LTR----VYTLQDLLFQSDCVSLHCTL-N 241 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~g--v~~----~~sLdelL~~sDvVil~lPl-t 241 (501)
..+.-.+|.|||.|..|...++.++++|.+|.+||.+... ......+ ++. ...+++.+++||+||.++-. .
T Consensus 28 ~gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG 107 (168)
T d1pjca1 28 PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPG 107 (168)
T ss_dssp TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTT
T ss_pred CCCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCC
Confidence 3467889999999999999999999999999999987532 1111111 111 12467889999999988753 4
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
..+-.+|.++.++.||+|+++||++=
T Consensus 108 ~~aP~lIt~~mv~~Mk~GSVIVDvai 133 (168)
T d1pjca1 108 RRAPILVPASLVEQMRTGSVIVDVAV 133 (168)
T ss_dssp SSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred cccCeeecHHHHhhcCCCcEEEEeec
Confidence 56788999999999999999999974
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.49 E-value=3e-07 Score=84.47 Aligned_cols=95 Identities=21% Similarity=0.275 Sum_probs=73.0
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC----------------------------
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY---------------------------- 222 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~---------------------------- 222 (501)
.+.-.+|.|||.|..|...++.++++|++|.+||.+... +..++.+.+.+.
T Consensus 26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 466779999999999999999999999999999987643 333333322211
Q ss_pred -CHHHHHhcCCEEEEeccC-chhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 223 -TLQDLLFQSDCVSLHCTL-NEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 223 -sLdelL~~sDvVil~lPl-t~~T~~lI~~~~l~~MK~gAilINva 266 (501)
.+.+.++++|+||.++-. ...+-.+|+++.++.||+|+++||++
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 134558899999976542 33466789999999999999999996
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=98.46 E-value=1.6e-08 Score=88.75 Aligned_cols=87 Identities=14% Similarity=-0.012 Sum_probs=58.7
Q ss_pred EEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhc
Q psy7383 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQ 255 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~ 255 (501)
|||||+|+||+.|++.|+.-+..+.+|+|+... ...+..+ ....+++|++++||+|++++|.. +. .+.+..
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~-~~~~~~~~~~~~~DiVil~v~d~-~i-----~~v~~~ 74 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYG-GKAATLEKHPELNGVVFVIVPDR-YI-----KTVANH 74 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTC-CCCCSSCCCCC---CEEECSCTT-TH-----HHHHTT
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccc-ccccchhhhhccCcEEEEeccch-hh-----hHHHhh
Confidence 799999999999999997744445689987643 2333333 33558889999999999999953 22 344555
Q ss_pred C-CCCcEEEEcCCCCcc
Q psy7383 256 M-RPGAFLVNTARGGLV 271 (501)
Q Consensus 256 M-K~gAilINvaRG~vV 271 (501)
+ +++.++|+++.+.-.
T Consensus 75 l~~~~~ivi~~s~~~~~ 91 (153)
T d2i76a2 75 LNLGDAVLVHCSGFLSS 91 (153)
T ss_dssp TCCSSCCEEECCSSSCG
T ss_pred hcccceeeeecccchhh
Confidence 6 479999999876443
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.39 E-value=3.3e-07 Score=82.08 Aligned_cols=94 Identities=22% Similarity=0.304 Sum_probs=70.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhhhcCcee--cCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEKSLGLTR--VYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~~~gv~~--~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
++.+++|.|||.|.||+.+++.|...|. +|.+++|+... .....++.+. +.++.+.+.++|+||.++. ....
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~ats---s~~~ 97 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA---APHP 97 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS---SSSC
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecC---CCCc
Confidence 4899999999999999999999999998 69999998543 3445556543 3466777899999999876 3456
Q ss_pred cccHHHHhcC------CCCcEEEEcCCC
Q psy7383 247 LINEFTIKQM------RPGAFLVNTARG 268 (501)
Q Consensus 247 lI~~~~l~~M------K~gAilINvaRG 268 (501)
+|+.+.++.. ++..+|||.+..
T Consensus 98 ii~~~~i~~~~~~r~~~~~~~iiDlavP 125 (159)
T d1gpja2 98 VIHVDDVREALRKRDRRSPILIIDIANP 125 (159)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred cccHhhhHHHHHhcccCCCeEEEeecCC
Confidence 7777766532 234477776654
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.26 E-value=9.3e-07 Score=80.53 Aligned_cols=94 Identities=23% Similarity=0.250 Sum_probs=76.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
-|++|+|+|||||.=|++=|..|+-.|++|++--|..+. ..+++.|++. .+++|+.+++|+|.+.+|.. ....++.
T Consensus 13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v-~~~~eA~~~aDiim~L~PD~-~q~~vy~ 90 (182)
T d1np3a2 13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAAADVVMILTPDE-FQGRLYK 90 (182)
T ss_dssp HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-ECHHHHHHTCSEEEECSCHH-HHHHHHH
T ss_pred HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc-ccHHHHhhhcCeeeeecchH-HHHHHHH
Confidence 388999999999999999999999999999987665443 3455678775 58999999999999999943 3355667
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q psy7383 250 EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG 268 (501)
++....||+|+.|. .++|
T Consensus 91 ~~I~p~lk~g~~L~-FaHG 108 (182)
T d1np3a2 91 EEIEPNLKKGATLA-FAHG 108 (182)
T ss_dssp HHTGGGCCTTCEEE-ESCC
T ss_pred HhhhhhcCCCcEEE-Eecc
Confidence 78999999999874 4566
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=98.23 E-value=3.8e-08 Score=82.84 Aligned_cols=91 Identities=15% Similarity=0.018 Sum_probs=67.8
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh---hcCceec--CCHHHHHhcCCEEEEeccCchhhh
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK---SLGLTRV--YTLQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~---~~gv~~~--~sLdelL~~sDvVil~lPlt~~T~ 245 (501)
.+|+||+|.|||.|.+|.+-|+.|..+|++|+++++...++... ...++.. .--++.+..+++|+.+.. .
T Consensus 8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~-----d 82 (113)
T d1pjqa1 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD-----D 82 (113)
T ss_dssp ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS-----C
T ss_pred EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCC-----C
Confidence 46999999999999999999999999999999999887654321 2222211 112345778898887643 3
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINva 266 (501)
..+|++..+.+|+..++||+.
T Consensus 83 ~~~n~~i~~~a~~~~ilVNv~ 103 (113)
T d1pjqa1 83 DTVNQRVSDAAESRRIFCNVV 103 (113)
T ss_dssp HHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHHHHcCCEEEeC
Confidence 446777888889999999963
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=2.6e-06 Score=74.22 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=67.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhh-hhcC-------ceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIE-KSLG-------LTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~-~~~g-------v~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
+||+|||.|.||+.+|..|...|++|.+++|....... ...+ .....+..+.+..+|+|+++++. .++...
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence 58999999999999999999999999999987643211 1111 11122456778899999999984 355555
Q ss_pred ccHHHHhcCCCCcEEEEcCCC
Q psy7383 248 INEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG 268 (501)
+ +.....+++++.+|.+..|
T Consensus 80 ~-~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 80 V-KSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp H-HHHHTTSCTTSCEEEECSS
T ss_pred H-HhhccccCcccEEeeccCc
Confidence 4 3455677889999998777
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=8e-06 Score=74.76 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=80.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-h-----hhh------h------------------cCceecCCHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-G-----IEK------S------------------LGLTRVYTLQ 225 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~-----~~~------~------------------~gv~~~~sLd 225 (501)
++|+|||.|.||+.+|..+...|++|+.||+.... + ..+ . ..+....++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~ 84 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 84 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence 68999999999999999999999999999987531 0 000 0 0123445778
Q ss_pred HHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 226 DLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 226 elL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
+.+++||+|+=++|.+-+.+.-+-++.-+.++++++|.....+ +....|.+.+..
T Consensus 85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~ 139 (192)
T d1f0ya2 85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTR 139 (192)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSC
T ss_pred hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc--cccchhhhhccC
Confidence 8999999999999998888877777788889999999776665 455556665543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.09 E-value=5.9e-06 Score=75.76 Aligned_cols=149 Identities=16% Similarity=0.138 Sum_probs=90.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--------------hhh-------hhcCceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--------------GIE-------KSLGLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--------------~~~-------~~~gv~~~~sLdelL~~sDvV 234 (501)
++|+|||+|.+|..+|..|...|++|++||..... ... .........++++.+.+||++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 57999999999999999999999999999975311 000 011123446788999999999
Q ss_pred EEeccCch------h---hhhccc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH-c--CCceEEEEe-cCCCCCCC
Q psy7383 235 SLHCTLNE------H---NHHLIN--EFTIKQMRPGAFLVNTARGGLVDDDSLAAALK-Q--GRIRAAALD-VHESEPYN 299 (501)
Q Consensus 235 il~lPlt~------~---T~~lI~--~~~l~~MK~gAilINvaRG~vVde~aL~~aL~-~--g~I~GAaLD-Vfe~EPl~ 299 (501)
++|+|.-- + ...+++ ...++..+++.++|..+.-.+=..+.++..+. + +...+--+. +|-+|=+.
T Consensus 81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~ 160 (202)
T d1mv8a2 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR 160 (202)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence 99998411 1 111221 23556677899999999877655655544332 1 111110011 14556554
Q ss_pred CCC--CCCCCCCCeEEecCCCCCcHHHHHHH
Q psy7383 300 VFQ--GNLKDAPNILCTPHAAFYSEASCTEL 328 (501)
Q Consensus 300 ~~~--~pL~~~pNVilTPHiAg~T~ea~~~~ 328 (501)
+.. ..+...+.+|+ |+.+.++.+.+
T Consensus 161 ~G~a~~d~~~~~~iVi----G~~~~~~~~~~ 187 (202)
T d1mv8a2 161 ESTAIKDYDFPPMTVI----GELDKQTGDLL 187 (202)
T ss_dssp TTSHHHHHHSCSCEEE----EESSHHHHHHH
T ss_pred ccchhhhhcCCCeEEE----EeCCHHHHHHH
Confidence 311 23455566665 44555554443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=3.1e-06 Score=68.48 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=48.6
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhh--cCcee-c-CCHHHHHhcCCEEEEe
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS--LGLTR-V-YTLQDLLFQSDCVSLH 237 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~--~gv~~-~-~sLdelL~~sDvVil~ 237 (501)
+++||+|.|+|+|..|+++|+.|..+|++|++||.+........ .+... . ..-++.+.+.|+|++.
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S 71 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS 71 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC
Confidence 47899999999999999999999999999999998654322111 12211 1 1125667888998875
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.04 E-value=2.6e-06 Score=77.04 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=65.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhh---------c-------CceecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS---------L-------GLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~---------~-------gv~~~~sLdelL~~sDvVil~lP 239 (501)
++|+|||.|.+|.++|..|...|.+|..|.|..+.+..+. . .+....+++++++++|+|++++|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 5899999999999999999999999999987543221111 0 01223578899999999999999
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCCCc
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARGGL 270 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG~v 270 (501)
. ...+.++ ++....+++. .+|.+..|-.
T Consensus 81 s-~~~~~~~-~~l~~~l~~~-~ii~~tkg~~ 108 (180)
T d1txga2 81 T-DGVLPVM-SRILPYLKDQ-YIVLISKGLI 108 (180)
T ss_dssp G-GGHHHHH-HHHTTTCCSC-EEEECCCSEE
T ss_pred h-hhhHHHH-Hhhccccccc-eecccccCcc
Confidence 4 3455554 3455556655 5666667754
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.04 E-value=3.6e-06 Score=76.63 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=77.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-h--h---hh------hcC-------------ceecCCHHHHHhc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-G--I---EK------SLG-------------LTRVYTLQDLLFQ 230 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~--~---~~------~~g-------------v~~~~sLdelL~~ 230 (501)
++|+|||.|.||+.+|..+...|++|++||+.... + . .. ..+ +....++ +.+.+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 83 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 83 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence 57999999999999999999999999999987431 0 0 00 001 1111222 34789
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHc
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQ 282 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~ 282 (501)
||+|+-++|.+-+.+.-+-++.-+.++++++|...+.+ +....|.+.+..
T Consensus 84 adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~--l~i~~la~~~~~ 133 (186)
T d1wdka3 84 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR 133 (186)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC
T ss_pred cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccc--ccHHHHHHhccC
Confidence 99999999998888887778888899999999888776 555666666543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.01 E-value=2.1e-06 Score=78.61 Aligned_cols=92 Identities=9% Similarity=0.077 Sum_probs=65.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--h-------------hhhcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--I-------------EKSLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~-------------~~~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
++|+|||.|.+|.++|..|...|.+|..|+|..... . .....+....++++++.++|+|++++|.
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs 87 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT 87 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcH
Confidence 479999999999999999999999999999764210 0 0011244456899999999999999993
Q ss_pred chhhhhcccHH---H-HhcCCCCcEEEEcCCC
Q psy7383 241 NEHNHHLINEF---T-IKQMRPGAFLVNTARG 268 (501)
Q Consensus 241 t~~T~~lI~~~---~-l~~MK~gAilINvaRG 268 (501)
...+.++.+- . ....+++..+|+++.|
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG 118 (189)
T d1n1ea2 88 -QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG 118 (189)
T ss_dssp -HHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred -HHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence 2334333210 0 1123568889999888
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.96 E-value=1.1e-05 Score=75.66 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=69.6
Q ss_pred ccC-CeEEeeccchHHHHHHHHHHh------CCCEEEEECCCC--CchhhhhcCcee----cCCHHHHHhcCCEEEEecc
Q psy7383 173 IRG-DTLGIVGLGRIGSAVALRAKA------FGFNVIFYDPYL--PDGIEKSLGLTR----VYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 173 L~g-ktVGIVGlG~IG~~iA~~L~a------fG~~Vi~~dr~~--~~~~~~~~gv~~----~~sLdelL~~sDvVil~lP 239 (501)
++| |+|+|||||.-|++=|..|+- .|.+|++-=|.. +...+++.|++. +.+.+|+.+++|+|.+.+|
T Consensus 41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP 120 (226)
T d1qmga2 41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120 (226)
T ss_dssp TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence 678 899999999999999999998 567776543332 334555667651 3478899999999999999
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
..-+ ..++ ++....||+|+.|.= +.|
T Consensus 121 De~Q-~~vy-~~I~p~Lk~G~~L~F-aHG 146 (226)
T d1qmga2 121 DSAQ-ADNY-EKVFSHMKPNSILGL-SHG 146 (226)
T ss_dssp HHHH-HHHH-HHHHHHSCTTCEEEE-SSS
T ss_pred hHHH-HHHH-HHHHHhcCCCceeee-cch
Confidence 5443 3455 578899999998753 454
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.87 E-value=1.3e-05 Score=75.81 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=81.7
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceecCCHHHHH-hcCCEEEEeccCchhhhhc
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRVYTLQDLL-FQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~~sLdelL-~~sDvVil~lPlt~~T~~l 247 (501)
.+|.|+||.|-|||++|+.+|+.|...|++|++.|.+... ......+.... +.++++ ..|||++-|. ..+.
T Consensus 35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA-----~~~~ 108 (230)
T d1leha1 35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCA-----LGAV 108 (230)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECS-----CSCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEecccc-----cccc
Confidence 3599999999999999999999999999999999976422 22334555544 566665 4899998774 4788
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
|+++...+++- .++|-.+...+.+.++. +.|.++.|.
T Consensus 109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~ 145 (230)
T d1leha1 109 LNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV 145 (230)
T ss_dssp BSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred cChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE
Confidence 99888888874 47777777888777664 555555554
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=9.3e-05 Score=66.75 Aligned_cols=134 Identities=15% Similarity=0.172 Sum_probs=87.5
Q ss_pred ccccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 171 ARIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 171 ~~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
.+++||+|.|||-+. +|+.+|.+|...|++|..++.+. .++.+.++++|+|+.++.. .++|.
T Consensus 35 i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t-------------~~l~~~~~~aDivi~a~G~----~~~i~ 97 (170)
T d1a4ia1 35 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT-------------AHLDEEVNKGDILVVATGQ----PEMVK 97 (170)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHHHTTCSEEEECCCC----TTCBC
T ss_pred cccccceEEEEecCCccchHHHHHHHhccCceEEEeccc-------------ccHHHHHhhccchhhcccc----ccccc
Confidence 369999999999987 89999999999999999988532 2567889999999999873 46676
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~ 329 (501)
.+ ..|+|+++||++--.+.|... ...+++.| ||-.+|= ...-..+||==+|.=.=+..-+.
T Consensus 98 ~~---~vk~g~iviDvgi~~~~~~~~----~~~~~~~g---dvd~~~v---------~~~a~~~TPvPGGVGp~Tva~L~ 158 (170)
T d1a4ia1 98 GE---WIKPGAIVIDCGINYVPDDKK----PNGRKVVG---DVAYDEA---------KERASFITPVPGGVGPMTVAMLM 158 (170)
T ss_dssp GG---GSCTTCEEEECCCBC--------------CCBC---SBCHHHH---------TTTCSEECCSSSSHHHHHHHHHH
T ss_pred cc---cccCCCeEeccCccccccccc----CCCCEEec---ccchHhh---------hhhceEeCCCCCchhHHHHHHHH
Confidence 54 579999999998654444332 23345554 4432111 11124689975554444444445
Q ss_pred HHHHHHHHHHH
Q psy7383 330 EMAASEIRRAI 340 (501)
Q Consensus 330 ~~~~~ni~~~l 340 (501)
+-+++-.++|+
T Consensus 159 ~N~v~a~~r~l 169 (170)
T d1a4ia1 159 QSTVESAKRFL 169 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 55555556665
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.68 E-value=2.8e-05 Score=65.79 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=50.2
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCcee-------cCCHHHH-HhcCCEEEEeccCchhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTR-------VYTLQDL-LFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~-------~~sLdel-L~~sDvVil~lPlt~~T 244 (501)
|++.|+|+|.+|+.+|+.|...|.+|+++|..... ...+..+... ...|+++ +.++|.|+++++.+.++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~ 78 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQA 78 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHh
Confidence 67899999999999999999999999999986532 1122233221 1234455 78999999998866543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.64 E-value=0.00056 Score=61.37 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=96.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--------------hhh---hh--cCceecCCHHHHHhcCCEEEE
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--------------GIE---KS--LGLTRVYTLQDLLFQSDCVSL 236 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--------------~~~---~~--~gv~~~~sLdelL~~sDvVil 236 (501)
++|+|||+|.+|..+|..+ +.|++|++||..... ... +. .......+..+...++|+|++
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 5799999999999999766 579999999966421 000 00 112222355566789999999
Q ss_pred eccCchhhh-hccc-------HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCC---
Q psy7383 237 HCTLNEHNH-HLIN-------EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNL--- 305 (501)
Q Consensus 237 ~lPlt~~T~-~lI~-------~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL--- 305 (501)
++|...+.. ++.+ .+.+...+++.++|--+.-.+-..+.+...+.+.++. |-+|-+.+ .+-+
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~-G~ai~d~ 152 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRE-SKALYDN 152 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCT-TSTTHHH
T ss_pred cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcch-hhhHhhc
Confidence 999643322 2111 2233445778888888887777778888888777764 66777754 3433
Q ss_pred CCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q psy7383 306 KDAPNILCTPHAAFYSEASCTELREMAASEIRRA 339 (501)
Q Consensus 306 ~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~ 339 (501)
...++|++--+-. .+ ....+..+.+++.+.+.
T Consensus 153 ~~p~riv~G~~~~-~~-~~~~~~~~~~~~l~~~~ 184 (196)
T d1dlja2 153 LYPSRIIVSCEEN-DS-PKVKADAEKFALLLKSA 184 (196)
T ss_dssp HSCSCEEEECCTT-SC-HHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCHh-hH-HHHHHHHHHHHHHHHhh
Confidence 4556776654422 12 22334455555555554
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=7.3e-05 Score=67.23 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=88.0
Q ss_pred ccccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 171 ARIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 171 ~~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
.++.||+|.|||-+. +|+.+|.+|...|++|+.++.+. .++.+.++++|+|+.++. -.++|.
T Consensus 33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t-------------~~l~~~~~~ADivI~a~G----~p~~i~ 95 (166)
T d1b0aa1 33 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-------------KNLRHHVENADLLIVAVG----KPGFIP 95 (166)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-------------SCHHHHHHHCSEEEECSC----CTTCBC
T ss_pred cccccceEEEEeccccccHHHHHHHHHhhcccccccccc-------------chhHHHHhhhhHhhhhcc----Cccccc
Confidence 358999999999998 89999999999999999887432 257788999999999986 247777
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHH
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELR 329 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~ 329 (501)
.+ .+|+|+++||++--.+ +++++.| ||...+ . ...--.+||=-+|.-.=+..-+.
T Consensus 96 ~~---~vk~g~vvIDvGi~~~----------~~~~~~G---dvd~~~-v--------~~~a~~~TPvPGGVGP~Tva~L~ 150 (166)
T d1b0aa1 96 GD---WIKEGAIVIDVGINRL----------ENGKVVG---DVVFED-A--------AKRASYITPVPGGVGPMTVATLI 150 (166)
T ss_dssp TT---TSCTTCEEEECCCEEC----------TTSCEEC---SBCHHH-H--------HHHCSEECCSSSSSHHHHHHHHH
T ss_pred cc---ccCCCcEEEecCceec----------CCCCEEe---ccccHh-H--------HhheeEeCCCCCcccHHHHHHHH
Confidence 54 4689999999975432 2355543 543211 0 01113799998887554434444
Q ss_pred HHHHHHHHHHH
Q psy7383 330 EMAASEIRRAI 340 (501)
Q Consensus 330 ~~~~~ni~~~l 340 (501)
+-+++..+++.
T Consensus 151 ~N~v~a~~~~~ 161 (166)
T d1b0aa1 151 ENTLQACVEYH 161 (166)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 44444444443
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=7.4e-05 Score=67.47 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=65.0
Q ss_pred ccccCCeEEeeccchH-HHHHHHHHHhCCCEEEEECCCCCchhhhhc-------Cce---e--cCCHHHHHhcCCEEEEe
Q psy7383 171 ARIRGDTLGIVGLGRI-GSAVALRAKAFGFNVIFYDPYLPDGIEKSL-------GLT---R--VYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 171 ~~L~gktVGIVGlG~I-G~~iA~~L~afG~~Vi~~dr~~~~~~~~~~-------gv~---~--~~sLdelL~~sDvVil~ 237 (501)
.+|+||++.|||-+.| |+.+|.+|...|+.|..++........+.. +.. . .+.+++.+.++|+|+..
T Consensus 25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsa 104 (171)
T d1edza1 25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG 104 (171)
T ss_dssp CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEc
Confidence 4799999999999976 999999999999999988754321111000 000 0 11267778899999999
Q ss_pred ccCchhhhhc-ccHHHHhcCCCCcEEEEcCCCC
Q psy7383 238 CTLNEHNHHL-INEFTIKQMRPGAFLVNTARGG 269 (501)
Q Consensus 238 lPlt~~T~~l-I~~~~l~~MK~gAilINvaRG~ 269 (501)
++.. ++ +..+ ..|+|+++||++-..
T Consensus 105 vG~p----~~~i~~d---~ik~GavvIDvGi~~ 130 (171)
T d1edza1 105 VPSE----NYKFPTE---YIKEGAVCINFACTK 130 (171)
T ss_dssp CCCT----TCCBCTT---TSCTTEEEEECSSSC
T ss_pred cCCC----ccccChh---hcccCceEeeccccc
Confidence 8743 22 4432 358999999998654
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=97.56 E-value=0.00021 Score=67.61 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=95.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC---------Cc-hh---------------hhhcCceecCCHHH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL---------PD-GI---------------EKSLGLTRVYTLQD 226 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~---------~~-~~---------------~~~~gv~~~~sLde 226 (501)
+|.|+||.|-|||++|+.+|+.|...|++|++++... +. .+ ....+.+.+.+.++
T Consensus 28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (242)
T d1v9la1 28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA 107 (242)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence 4899999999999999999999999999998765321 00 00 01122233334456
Q ss_pred HHh-cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCC
Q psy7383 227 LLF-QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNL 305 (501)
Q Consensus 227 lL~-~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL 305 (501)
++. .|||++-|. +.+.|+++...+|+- .+++-.+-+.+ +.++ .+.|.++.|. ++=|..-+----. .+-|
T Consensus 108 i~~~~~DIliPcA-----~~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~-~~PD~~aNaGGVi-~s~~ 177 (242)
T d1v9la1 108 IFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV-VVPDILANAGGVI-MSYL 177 (242)
T ss_dssp GGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE-EECHHHHSTHHHH-HHHH
T ss_pred hccccccEEeecc-----hhccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE-EeCchhhcCcchh-hhhh
Confidence 654 899998774 467888888888874 47777788875 5666 4778888776 3444332100000 0000
Q ss_pred CCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q psy7383 306 KDAPNILCTPHAAFYSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 306 ~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l 340 (501)
--..| ..|.-|..++..+++.+++.+++.+.+
T Consensus 178 E~~qn---~~~~~w~~e~v~~~l~~im~~~~~~v~ 209 (242)
T d1v9la1 178 EWVEN---LQWYIWDEEETRKRLENIMVNNVERVY 209 (242)
T ss_dssp HHHHH---HTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccc---cccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 00000 122334456666666666666666655
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.56 E-value=2.4e-05 Score=67.93 Aligned_cols=105 Identities=14% Similarity=0.042 Sum_probs=65.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh--hhhcCce--------ecCCHHHHHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI--EKSLGLT--------RVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~--~~~~gv~--------~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
++|+|.|||.|.||+.+|+.|...|++|+++||+..... ....+.. ....+++.+...|+++.++|....
T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~ 80 (182)
T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH 80 (182)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence 368999999999999999999999999999999865322 2222211 112345678889999988874321
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGR 284 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~ 284 (501)
.. .....++.+..+++++.-. -+...|.+......
T Consensus 81 --~~---~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 115 (182)
T d1e5qa1 81 --AT---VIKSAIRQKKHVVTTSYVS-PAMMELDQAAKDAG 115 (182)
T ss_dssp --HH---HHHHHHHHTCEEECSSCCC-HHHHHTHHHHHHTT
T ss_pred --hH---HHHHHHhhccceeecccCc-HHHHHHHHHhcccc
Confidence 11 1223334566777765321 12334444444433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.55 E-value=8.8e-05 Score=65.44 Aligned_cols=91 Identities=22% Similarity=0.241 Sum_probs=64.6
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC------C-HHHHHhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY------T-LQDLLFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~------s-LdelL~~sDvVil~lPlt~~T~ 245 (501)
.|.+|.|+|.|.+|...++.++.+|++|+++|++..+ +..+++|...+. + .+......|+|+.++....+
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~-- 104 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD-- 104 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT--
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc--
Confidence 5889999999999999999999999999999987643 556667754321 1 12234457888877653211
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
+.-...++.++++..+|.++-
T Consensus 105 -~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 105 -IDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp -CCTTTGGGGEEEEEEEEECCC
T ss_pred -chHHHHHHHhhccceEEEecc
Confidence 111346778888888888864
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.30 E-value=0.00065 Score=63.88 Aligned_cols=111 Identities=20% Similarity=0.260 Sum_probs=78.6
Q ss_pred cccCCeEEeeccchHHHHHHHHH-HhCCCEEEEECCCC-----Cchh---------------hhhcCceecCCHHHHHh-
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRA-KAFGFNVIFYDPYL-----PDGI---------------EKSLGLTRVYTLQDLLF- 229 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L-~afG~~Vi~~dr~~-----~~~~---------------~~~~gv~~~~sLdelL~- 229 (501)
+|+|+||.|-|+|++|+.+|+.| +.+|++|++.+... ..++ ....+.+.. +.++++.
T Consensus 28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 106 (234)
T d1b26a1 28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLEL 106 (234)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHHHHTS
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-cccccccc
Confidence 58999999999999999999999 57899998765321 0000 011122333 5677776
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
+|||++-|. ..+.|+++...+++-. +++-.+-+.+ ..++ .+.|.++.|. ++=|+
T Consensus 107 ~~DI~~PcA-----~~~~I~~~~a~~l~~~-~I~e~AN~p~-t~~a-~~~L~~rgI~-~~PD~ 160 (234)
T d1b26a1 107 DVDILVPAA-----LEGAIHAGNAERIKAK-AVVEGANGPT-TPEA-DEILSRRGIL-VVPDI 160 (234)
T ss_dssp CCSEEEECS-----CTTCBCHHHHTTCCCS-EEECCSSSCB-CHHH-HHHHHHTTCE-EECHH
T ss_pred ccceeecch-----hcccccHHHHHHhhhc-eEeecCCCCC-CHHH-HHHHHHCCeE-EechH
Confidence 999997763 5789999999999864 7778888776 4444 4677777775 45554
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=0.00021 Score=63.29 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=62.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhh---cCceecCCHHHH-HhcCCEEEEeccCchhhh
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKS---LGLTRVYTLQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~---~gv~~~~sLdel-L~~sDvVil~lPlt~~T~ 245 (501)
.+.||+|.|+|.|..+++++..|...|.+|.+++|+..+. ..+. .+.....++++. ..++|+||.++|..-...
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~~ 94 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGD 94 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTC
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcccC
Confidence 4789999999999999999999999999999999986432 1111 111112244443 467999999999653321
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.....+..++++++++++--
T Consensus 95 --~~~~~~~~~~~~~~v~D~vY 114 (170)
T d1nyta1 95 --IPAIPSSLIHPGIYCYDMFY 114 (170)
T ss_dssp --CCCCCGGGCCTTCEEEESCC
T ss_pred --CCCCcHHHhccCcEEEEeec
Confidence 11112344566666666543
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00022 Score=62.48 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=68.6
Q ss_pred CeEEeeccchHHHH-HHHHHHhC-CCEEE-EECCCCCc--hhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccH
Q psy7383 176 DTLGIVGLGRIGSA-VALRAKAF-GFNVI-FYDPYLPD--GIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINE 250 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~ 250 (501)
.+|||||+|.||+. ....++.. +++++ ++|++... ...+..++....++++++++.|+|++++|.. ++.-+-.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~--~h~~~~~ 79 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTA--SHFDVVS 79 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTT--HHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccch--hcccccc
Confidence 37999999999986 56667665 67765 57887643 3345567777778999999999999999844 2222223
Q ss_pred HHHhcCCCCcEEEEc--CCCCccCHHHHHHHHHcCCce
Q psy7383 251 FTIKQMRPGAFLVNT--ARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 251 ~~l~~MK~gAilINv--aRG~vVde~aL~~aL~~g~I~ 286 (501)
..++.= -.+|+.- +. .+-+...|.++.++..+.
T Consensus 80 ~al~~g--k~V~~EKPla~-~~~e~~~l~~~a~~~~~~ 114 (164)
T d1tlta1 80 TLLNAG--VHVCVDKPLAE-NLRDAERLVELAARKKLT 114 (164)
T ss_dssp HHHHTT--CEEEEESSSCS-SHHHHHHHHHHHHHTTCC
T ss_pred cccccc--ceeeccccccC-CHHHHHHHHHHHHHcCCc
Confidence 333331 1455542 22 234556677776666543
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=97.27 E-value=0.00097 Score=63.07 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=77.6
Q ss_pred hcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCC
Q psy7383 215 SLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHE 294 (501)
Q Consensus 215 ~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe 294 (501)
+.|++.+.++.|+++++|+|++++|..+.+..++ ++....++++++++|++.........+.+.+++..+. +++-..
T Consensus 126 e~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~--vi~~hp 202 (242)
T d2b0ja2 126 DVGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN--ITSYHP 202 (242)
T ss_dssp GGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE--EEECBC
T ss_pred HCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE--EECCCc
Confidence 3578888899999999999999999777777787 6788999999999999999888888899999888776 344332
Q ss_pred CCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHHHHH
Q psy7383 295 SEPYNVFQGNLKDAPNILCTPHAAFYSEASCTELREM 331 (501)
Q Consensus 295 ~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~~~~ 331 (501)
-=+ |-..-..+++ +++.++|..+.+.++
T Consensus 203 ~a~------pe~~g~~li~---~~~aseE~iekv~el 230 (242)
T d2b0ja2 203 GCV------PEMKGQVYIA---EGYASEEAVNKLYEI 230 (242)
T ss_dssp SSC------TTTCCCEEEE---ESSSCHHHHHHHHHH
T ss_pred cCc------CccccceEEe---cCCCCHHHHHHHHHH
Confidence 111 1111223343 345677777666554
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00046 Score=60.62 Aligned_cols=90 Identities=27% Similarity=0.302 Sum_probs=65.6
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceec-----CCHHHHH--------hcCCEEEEec
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRV-----YTLQDLL--------FQSDCVSLHC 238 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~-----~sLdelL--------~~sDvVil~l 238 (501)
.|.+|.|+|.|.||...++.++.+|+ +|++.|++..+ +..+++|.+.+ .+..+.. ...|+|+-++
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence 47789999999999999999999999 79999987543 45666776432 2333332 2579998877
Q ss_pred cCchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 239 TLNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 239 Plt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.. +.+ + +..++.++++..++.++-.
T Consensus 106 G~-~~~---~-~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 106 GA-EAS---I-QAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp CC-HHH---H-HHHHHHSCTTCEEEECSCC
T ss_pred CC-chh---H-HHHHHHhcCCCEEEEEecC
Confidence 52 222 2 4678889999999888753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.19 E-value=0.00048 Score=58.16 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=58.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc--hhhhhcCceec----CC---HHHH-HhcCCEEEEeccCchhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD--GIEKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~--~~~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~T~ 245 (501)
++|.|+|+|.+|+.+|+.|...|.+|++.|..... ......+...+ .+ |+++ +.++|.++...+.. ..
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d--~~ 78 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE--EV 78 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH--HH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcH--HH
Confidence 47999999999999999999999999999976532 12223344322 12 3333 67899988876643 34
Q ss_pred hcccHHHHhcCCCCcEEE
Q psy7383 246 HLINEFTIKQMRPGAFLV 263 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilI 263 (501)
+++-....+.+.+..+++
T Consensus 79 N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 79 NLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp HHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHcCCceEEE
Confidence 555555666777766654
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.17 E-value=0.00041 Score=61.37 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=56.9
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEE-EECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHH
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVI-FYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTI 253 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi-~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l 253 (501)
.+|||||+|.||+.+++.++.. +++++ ++|++... ....++....++++++.+.|+|++++|..... +-..
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~--~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~-----~~a~ 76 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQA 76 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHH
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc--ccccccccchhhhhhccccceEEEeCCCcccH-----HHHH
Confidence 4799999999999999999876 67765 45665432 22234455567788889999999999854321 2334
Q ss_pred hcCCCCcEEEEc
Q psy7383 254 KQMRPGAFLVNT 265 (501)
Q Consensus 254 ~~MK~gAilINv 265 (501)
+.++.|.-+|.+
T Consensus 77 ~aL~aG~~vv~~ 88 (170)
T d1f06a1 77 PKFAQFACTVDT 88 (170)
T ss_dssp HHHTTTSEEECC
T ss_pred HHHHCCCcEEEe
Confidence 445667655543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.14 E-value=0.00051 Score=59.99 Aligned_cols=90 Identities=24% Similarity=0.267 Sum_probs=62.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-------CCHHHH---H-----hcCCEEEEe
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-------YTLQDL---L-----FQSDCVSLH 237 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-------~sLdel---L-----~~sDvVil~ 237 (501)
.|.+|.|+|.|.||...++.++.+|++|+++|++..+ +..+++|.... .+.++. + ...|+|+-+
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~ 105 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 105 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence 5789999999999999999999999999999987543 44455554321 122222 2 237888777
Q ss_pred ccCchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 238 lPlt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
+. .+.+ + ...++.++++..++.++-.
T Consensus 106 ~g-~~~~---~-~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 106 SG-NEKC---I-TIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp SC-CHHH---H-HHHHHHSCTTCEEEECSCC
T ss_pred CC-ChHH---H-HHHHHHHhcCCceEEEecC
Confidence 64 2222 2 4567788899888888753
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.10 E-value=0.00069 Score=59.49 Aligned_cols=95 Identities=20% Similarity=0.347 Sum_probs=62.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhh-------cC----ceecCCHHHHHhcCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKS-------LG----LTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~-------~g----v~~~~sLdelL~~sDvVil~lP 239 (501)
+.+||+|||.|.+|+.+|..|...+. ++..+|.+.... .... .+ .....+.++.+++||+|++++.
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag 85 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence 45799999999999999988876664 899999775421 1111 11 1122356788999999999884
Q ss_pred Cc--h------hhhhc-c--c-------HHHHhcCCCCcEEEEcCCC
Q psy7383 240 LN--E------HNHHL-I--N-------EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 lt--~------~T~~l-I--~-------~~~l~~MK~gAilINvaRG 268 (501)
.. + .++.- + | .+.+....+.+++|+++..
T Consensus 86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP 132 (154)
T d1pzga1 86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP 132 (154)
T ss_dssp CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence 21 1 12221 1 1 2234555789999998764
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.09 E-value=0.00084 Score=65.19 Aligned_cols=111 Identities=14% Similarity=0.233 Sum_probs=75.5
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC-----Cc-----hhhh---hcC------ceecCCHHHHHh-cC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL-----PD-----GIEK---SLG------LTRVYTLQDLLF-QS 231 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~-----~~-----~~~~---~~g------v~~~~sLdelL~-~s 231 (501)
.|.|+||.|-|||++|+.+|+.|...|++|++.+... .. .+.+ ..+ .... +.++++. .|
T Consensus 33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 111 (293)
T d1hwxa1 33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKI-YEGSILEVDC 111 (293)
T ss_dssp SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCB-CCSCGGGCCC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeeccccccc-CCcccccCCc
Confidence 5999999999999999999999999999998875321 10 1100 000 0111 2244544 89
Q ss_pred CEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 232 DvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
||++-|. +.+.|+.+....++-. +++-.+.+.+ +.++ .+.|.++.|. .+=|+
T Consensus 112 DIliPaA-----~~~~I~~~~a~~l~ak-~I~EgAN~P~-t~eA-~~~L~~~gI~-viPD~ 163 (293)
T d1hwxa1 112 DILIPAA-----SEKQLTKSNAPRVKAK-IIAEGANGPT-TPQA-DKIFLERNIM-VIPDL 163 (293)
T ss_dssp SEEEECS-----SSSCBCTTTGGGCCCS-EEECCSSSCB-CHHH-HHHHHHTTCE-EECHH
T ss_pred cEEeecc-----ccccccHHHHHHHhhC-EEeccCCCCC-Ccch-HHHHHHCCCE-EeChh
Confidence 9998763 5788998888888754 7788888885 4455 3667777765 34443
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.08 E-value=0.00088 Score=63.16 Aligned_cols=106 Identities=21% Similarity=0.329 Sum_probs=74.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHH-hCCCEEEEECCCCC-----c-----hhh----------hhcCceecCCHHHHH-h
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAK-AFGFNVIFYDPYLP-----D-----GIE----------KSLGLTRVYTLQDLL-F 229 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~-afG~~Vi~~dr~~~-----~-----~~~----------~~~gv~~~~sLdelL-~ 229 (501)
.|.|+||.|-|||++|+.+|+.|. .+|++|++..-... . +.. ...+.+.+ +.++++ .
T Consensus 29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~ 107 (239)
T d1gtma1 29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLEL 107 (239)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHS
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-cccccccc
Confidence 489999999999999999999985 68999887642210 0 000 00123333 566765 4
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+|||++-|. +.+.|+++....++- .+++-.+-+.+. .++ .+.|.++.|.
T Consensus 108 ~~DIl~PcA-----~~~~I~~~~a~~i~a-k~I~e~AN~p~t-~ea-~~~L~~rgI~ 156 (239)
T d1gtma1 108 EVDVLAPAA-----IEEVITKKNADNIKA-KIVAEVANGPVT-PEA-DEILFEKGIL 156 (239)
T ss_dssp CCSEEEECS-----CSCCBCTTGGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred cccEEeecc-----ccccccHHHHHhccc-cEEEecCCCCCC-HHH-HHHHHHCCCE
Confidence 899998774 468888888888865 477788888764 444 4667777775
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=97.07 E-value=0.00042 Score=66.09 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=74.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEE--------CCCC-Cc-hh------------------hhhcCceecCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFY--------DPYL-PD-GI------------------EKSLGLTRVYT 223 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~--------dr~~-~~-~~------------------~~~~gv~~~~s 223 (501)
+|.|+||.|=|||++|+.+|+.|...|++|++. |+.- +. .+ ....+.+.+ +
T Consensus 33 ~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 111 (255)
T d1bgva1 33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-P 111 (255)
T ss_dssp CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-E
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee-c
Confidence 489999999999999999999999999999864 3321 11 10 001122222 2
Q ss_pred HHHH-HhcCCEEEEeccCchhhhhcccHHHHhcCCC-Cc-EEEEcCCCCccCHHHHHHHHHcCCceEEEEec
Q psy7383 224 LQDL-LFQSDCVSLHCTLNEHNHHLINEFTIKQMRP-GA-FLVNTARGGLVDDDSLAAALKQGRIRAAALDV 292 (501)
Q Consensus 224 Ldel-L~~sDvVil~lPlt~~T~~lI~~~~l~~MK~-gA-ilINvaRG~vVde~aL~~aL~~g~I~GAaLDV 292 (501)
.+++ -.+|||++-| .+.+.|+.+....++. +. +++--+.+.+. .++....|+++.|. ..=|+
T Consensus 112 ~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t-~ea~~~ll~~~gI~-vvPD~ 176 (255)
T d1bgva1 112 GEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTT-NEALRFLMQQPNMV-VAPSK 176 (255)
T ss_dssp TCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBC-HHHHHHHHHCTTCE-EECHH
T ss_pred hhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcc-hHHHHHHHHhcCCE-EehHh
Confidence 2333 3479998755 4678899888888864 33 67777777644 44555567776665 34454
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00041 Score=62.06 Aligned_cols=93 Identities=16% Similarity=0.278 Sum_probs=60.6
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchh-----hhh----cCc----eec---CCHHHHHhcCCEE
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGI-----EKS----LGL----TRV---YTLQDLLFQSDCV 234 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~-----~~~----~gv----~~~---~sLdelL~~sDvV 234 (501)
++++|+|.|+|.|..|++++..|...|. ++.+++|+..... .+. ... ... ..+.+.+.++|+|
T Consensus 15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 94 (182)
T d1vi2a1 15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL 94 (182)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence 5899999999999999999999999998 6889998764311 111 111 111 1244567899999
Q ss_pred EEeccCchhh---hhcccHHHHhcCCCCcEEEEcC
Q psy7383 235 SLHCTLNEHN---HHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 235 il~lPlt~~T---~~lI~~~~l~~MK~gAilINva 266 (501)
|.+.|..... ..++. .+..++++.+++|+.
T Consensus 95 IN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~ 127 (182)
T d1vi2a1 95 TNGTKVGMKPLENESLVN--DISLLHPGLLVTECV 127 (182)
T ss_dssp EECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECC
T ss_pred ccccCCccccccchhhhh--HHHhhhcchhhHHhh
Confidence 9999864321 11111 134456666665553
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.99 E-value=0.00063 Score=61.12 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=35.9
Q ss_pred ccccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 171 ARIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 171 ~~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.+|+||++.|.| -|.||+.+|+.|...|++|+..+|+..
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~ 58 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD 58 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence 469999999999 799999999999999999999998753
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.00045 Score=61.29 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=36.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGL 218 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv 218 (501)
.|.+|.|+|.|.||...++.++.+|+ +|++.|++..+ +..+++|.
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence 58999999999999999999999998 89999986532 34444543
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.93 E-value=0.00072 Score=57.76 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=66.1
Q ss_pred cccCCeEEeecc----------chHHHHHHHHHHhCCCEEEEECCCCCchh---------h---hhcCceecCCHHHHHh
Q psy7383 172 RIRGDTLGIVGL----------GRIGSAVALRAKAFGFNVIFYDPYLPDGI---------E---KSLGLTRVYTLQDLLF 229 (501)
Q Consensus 172 ~L~gktVGIVGl----------G~IG~~iA~~L~afG~~Vi~~dr~~~~~~---------~---~~~gv~~~~sLdelL~ 229 (501)
.+.+++|+|+|+ ..-...+++.|...|++|.+|||...... . .......+.++++++.
T Consensus 10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~ 89 (136)
T d1mv8a3 10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA 89 (136)
T ss_dssp TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence 477899999998 46778899999999999999998542110 0 0112234568999999
Q ss_pred cCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 230 ~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.||+|+++++... + .+....++++.+++|+ ||
T Consensus 90 ~~D~ivi~t~h~~-----f-~~l~~~~~~~~~I~D~-~~ 121 (136)
T d1mv8a3 90 SSDVLVLGNGDEL-----F-VDLVNKTPSGKKLVDL-VG 121 (136)
T ss_dssp HCSEEEECSCCGG-----G-HHHHHSCCTTCEEEES-SS
T ss_pred hceEEEEEeCCHH-----H-HHHHHHhcCCCEEEEC-CC
Confidence 9999999987432 1 3455677888999998 54
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.0013 Score=54.83 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=34.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD 210 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~ 210 (501)
..+.||||||-|.+|+-+|..++.+|++|+++|+....
T Consensus 9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 45678999999999999999999999999999988653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00046 Score=60.52 Aligned_cols=89 Identities=19% Similarity=0.256 Sum_probs=62.6
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC---CH---HHHHhcCCEEEEeccCchhhhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY---TL---QDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~---sL---delL~~sDvVil~lPlt~~T~~ 246 (501)
.|.+|.|+|.|.||...++.++.+|+++++.+++..+ +..+++|...+. +. .......|+++-++.... +
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~-~-- 106 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH-N-- 106 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC-C--
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch-h--
Confidence 5889999999999999999999999999999876543 455666654331 11 122345788887765321 1
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaR 267 (501)
+ ...+..++++..++.++.
T Consensus 107 -~-~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 107 -L-DDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp -H-HHHHTTEEEEEEEEECCC
T ss_pred -H-HHHHHHHhcCCEEEEecc
Confidence 1 345677788888887764
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.82 E-value=0.0012 Score=57.51 Aligned_cols=93 Identities=23% Similarity=0.243 Sum_probs=58.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCCch------hhh---hcCc--eecCCHHHHHhcCCEEEEeccCch
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPDG------IEK---SLGL--TRVYTLQDLLFQSDCVSLHCTLNE 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~~------~~~---~~gv--~~~~sLdelL~~sDvVil~lPlt~ 242 (501)
|||+|||.|.+|..+|-.|...| -++..||...... ... .... .....-.+.+++||+|+++.....
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~ 81 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK 81 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence 78999999999999999887655 4899999764321 110 0111 111122356899999999865321
Q ss_pred -------hhh--------hccc--HHHHhcCCCCcEEEEcCCC
Q psy7383 243 -------HNH--------HLIN--EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 243 -------~T~--------~lI~--~~~l~~MK~gAilINvaRG 268 (501)
+++ .++. .+.+....+++++|+++-.
T Consensus 82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP 124 (146)
T d1hyha1 82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP 124 (146)
T ss_dssp GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence 111 1221 2344556789999999764
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=96.77 E-value=0.0026 Score=55.97 Aligned_cols=89 Identities=21% Similarity=0.313 Sum_probs=59.9
Q ss_pred CeEEeeccchHHHH-HHHHHHhCC-CEEEE-ECCCCC-c--hhhhhcCceecC-CHHHHH-----hcCCEEEEeccCchh
Q psy7383 176 DTLGIVGLGRIGSA-VALRAKAFG-FNVIF-YDPYLP-D--GIEKSLGLTRVY-TLQDLL-----FQSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~~L~afG-~~Vi~-~dr~~~-~--~~~~~~gv~~~~-sLdelL-----~~sDvVil~lPlt~~ 243 (501)
.+|||||.|.||+. +.+.++.+. .++.+ .+++.. . ...+..++...+ ++++++ .+.|+|++++|...
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~- 83 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA- 83 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH-
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchh-
Confidence 47999999999985 678887764 45544 576643 2 234556665433 356554 36799999988433
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaR 267 (501)
|.=.+..++..+.|.++|+-+.
T Consensus 84 --h~~~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 84 --HVQNEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp --HHHHHHHHHHHCTTCEEEECST
T ss_pred --HHHhHHHHHHHHcCCEEEEccc
Confidence 3323445667899999999986
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.73 E-value=0.0016 Score=56.90 Aligned_cols=107 Identities=12% Similarity=0.190 Sum_probs=66.3
Q ss_pred CeEEeeccchHHHH-HHHHHHhC-CCEEEEECCCCCc--hhhhhcCce-ecCCHHHHHh-cCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSA-VALRAKAF-GFNVIFYDPYLPD--GIEKSLGLT-RVYTLQDLLF-QSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~~L~af-G~~Vi~~dr~~~~--~~~~~~gv~-~~~sLdelL~-~sDvVil~lPlt~~T~~lI~ 249 (501)
.+|||||+|.+|+. ....++.+ +.++.++|+.... ...+.++.. .+.+.++++. +.|+|++++|... ..-+-
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~--H~~~~ 79 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDV--HSTLA 79 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGG--HHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccc--ccccc
Confidence 47999999999976 56777666 6688889886532 233344543 3457788875 5699999988443 22222
Q ss_pred HHHHhcCCCCcEEEEcC-CCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGAFLVNTA-RGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gAilINva-RG~vVde~aL~~aL~~g~I~ 286 (501)
...++. . -.+|+.-= --.+-+.+.|.++.++..+.
T Consensus 80 ~~al~~-g-k~V~~EKP~~~~~~e~~~l~~~a~~~~~~ 115 (167)
T d1xeaa1 80 AFFLHL-G-IPTFVDKPLAASAQECENLYELAEKHHQP 115 (167)
T ss_dssp HHHHHT-T-CCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred cccccc-c-cccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 344443 2 23565431 12234556778887776654
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.71 E-value=0.0013 Score=57.24 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=62.4
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhhhh---------cCceecCCHHHHHhcCCEEEEecc
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIEKS---------LGLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~~~---------~gv~~~~sLdelL~~sDvVil~lP 239 (501)
-.++||+|||.|.+|+.+|..|...+. ++..||..... +.... ........-.+.+++||+|+++.-
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag 83 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG 83 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence 457899999999999999999976554 89999976432 11100 111111223467899999999765
Q ss_pred Cch---hhhh-cc--c-------HHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 240 LNE---HNHH-LI--N-------EFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 240 lt~---~T~~-lI--~-------~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
... +++. ++ | .+.+.+..|.+++|+++.. +|.-
T Consensus 84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNP--vd~~ 129 (148)
T d1ldna1 84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP--VDIL 129 (148)
T ss_dssp CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSS--HHHH
T ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc--cHHH
Confidence 321 1111 11 1 2234455688999998654 5543
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.0011 Score=59.37 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=48.7
Q ss_pred CCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCch-hhhhcCcee-------cCCHHHHHhcCCEEEEeccC
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDG-IEKSLGLTR-------VYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~-~~~~~gv~~-------~~sLdelL~~sDvVil~lPl 240 (501)
.|||.|+| .|.||+.+++.|...|++|.+++|+..+. .....+++. ..++++++.++|+|+.++..
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 58899999 79999999999999999999998865321 111122221 12456779999999988753
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.64 E-value=0.0027 Score=54.86 Aligned_cols=93 Identities=14% Similarity=0.208 Sum_probs=56.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCc--hhhhhc--C------ceecCCHHHHHhcCCEEEEeccCch-
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPD--GIEKSL--G------LTRVYTLQDLLFQSDCVSLHCTLNE- 242 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~--~~~~~~--g------v~~~~sLdelL~~sDvVil~lPlt~- 242 (501)
+||+|||.|.+|..+|-.+...+. ++..||..... +....+ . ......-.+.+++||+|+++.-...
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 81 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK 81 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence 589999999999999999877665 89999976532 211111 0 1111122456899999999854221
Q ss_pred --hhhh-cc--c-------HHHHhcCCCCcEEEEcCCC
Q psy7383 243 --HNHH-LI--N-------EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 243 --~T~~-lI--~-------~~~l~~MK~gAilINvaRG 268 (501)
+++. ++ | .+.+....|.+++|+++..
T Consensus 82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP 119 (142)
T d1y6ja1 82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP 119 (142)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecCh
Confidence 1221 11 1 1234455788999999764
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.59 E-value=0.00081 Score=57.60 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=31.3
Q ss_pred CeEEee-ccchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 176 DTLGIV-GLGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 176 ktVGIV-GlG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+||+|| |.|.||+.+|++|...|++|++|+|+.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 579999 8999999999999999999999998753
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.58 E-value=0.0013 Score=58.17 Aligned_cols=106 Identities=14% Similarity=0.170 Sum_probs=67.2
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEE-EECCCCCc--hhhhhcC----ceecCCHHHHHh--cCCEEEEeccCchhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVI-FYDPYLPD--GIEKSLG----LTRVYTLQDLLF--QSDCVSLHCTLNEHNH 245 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~g----v~~~~sLdelL~--~sDvVil~lPlt~~T~ 245 (501)
.+|||||+|.||+..++.++.. +++|. ++|+.... ...+..+ ...+.+++++++ +.|+|++++|......
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~ 81 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE 81 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence 3799999999999999999876 67877 46776432 2233333 234568999985 5789999988543222
Q ss_pred hcccHHHHhcCCCCcE-EEEc-CCCCccCHHHHHHHHHcCCce
Q psy7383 246 HLINEFTIKQMRPGAF-LVNT-ARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAi-lINv-aRG~vVde~aL~~aL~~g~I~ 286 (501)
-....|+.|.- ||.- .--.+-+.+.|.+..++.++.
T Consensus 82 -----~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~ 119 (184)
T d1ydwa1 82 -----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ 119 (184)
T ss_dssp -----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred -----hhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence 22333444533 3321 111233556788888887776
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.55 E-value=0.00071 Score=58.41 Aligned_cols=39 Identities=15% Similarity=0.345 Sum_probs=35.3
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.+|+||+|.|||-|.+|.+-|+.|..+|++|+++++...
T Consensus 9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~ 47 (150)
T d1kyqa1 9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH 47 (150)
T ss_dssp ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999999999999999999999999999976543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.51 E-value=0.00097 Score=59.23 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=60.8
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCC-chhhhhcCceec-----CCHHH-HHh-----cCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLP-DGIEKSLGLTRV-----YTLQD-LLF-----QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~-~~~~~~~gv~~~-----~sLde-lL~-----~sDvVil~lPl 240 (501)
.|.+|.|+|.|.||...++.++.+|+ +|++.|++.. .+..+++|...+ .++.+ +.+ ..|+|+-++..
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~ 106 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG 106 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence 47899999999999999999999998 7999998753 245556665322 12222 222 26888777653
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINva 266 (501)
. ..+ ++.++.+|++..++-++
T Consensus 107 ~----~~~-~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 107 S----ETL-SQAVKMVKPGGIISNIN 127 (174)
T ss_dssp T----THH-HHHHHHEEEEEEEEECC
T ss_pred H----HHH-HHHHHHHhcCCEEEEEe
Confidence 2 222 45567778888888876
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.51 E-value=0.00064 Score=60.45 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=48.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch--hhhhc----CceecCCHHHHHhcCCEEEEeccCc
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG--IEKSL----GLTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~----gv~~~~sLdelL~~sDvVil~lPlt 241 (501)
.+.+|+|.|+|.|..+++++..|...+.+|.+++|+.+.. ....+ .+......+..+.++|+||.++|..
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 4789999999999999999999988888999999986432 11111 1222211122356788888888854
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.49 E-value=0.00052 Score=61.02 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=51.4
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchh--hhhc----Cc-----eecCCHHHHHhcCCEEEEeccC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGI--EKSL----GL-----TRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~--~~~~----gv-----~~~~sLdelL~~sDvVil~lPl 240 (501)
+++||+|.|+|.|..+++++..|...| +|.+++|+..+.. ...+ .. ....+++..+..+|+|+.+.|.
T Consensus 15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~ 93 (177)
T d1nvta1 15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI 93 (177)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcc
Confidence 589999999999999999999998888 9999999864321 1110 00 1223556667889999999985
Q ss_pred c
Q psy7383 241 N 241 (501)
Q Consensus 241 t 241 (501)
.
T Consensus 94 g 94 (177)
T d1nvta1 94 G 94 (177)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.48 E-value=0.0024 Score=55.12 Aligned_cols=89 Identities=21% Similarity=0.267 Sum_probs=62.8
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC-----CHH----HHHhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY-----TLQ----DLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~-----sLd----elL~~sDvVil~lPlt~~ 243 (501)
.|.+|.|+|.|.||...++.++.+|.+|++.+++..+ ...+++|...+. ++. +...+.|.++.+.. ..+
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~ 105 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP 105 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence 5789999999999999999999999999999976543 445667754331 222 23344566665543 333
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+ + ...+..|+++..++.++-
T Consensus 106 ~---~-~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 106 A---F-QSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp H---H-HHHHHHEEEEEEEEECCC
T ss_pred H---H-HHHHHHhccCCceEeccc
Confidence 2 2 467788888888888764
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.47 E-value=0.0045 Score=51.69 Aligned_cols=100 Identities=12% Similarity=0.227 Sum_probs=73.3
Q ss_pred CeEEeec----cchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhcccHH
Q psy7383 176 DTLGIVG----LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF 251 (501)
Q Consensus 176 ktVGIVG----lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~ 251 (501)
|+|+||| -+..|..+.+.|+.+|++|+..+++..+ -.|...+.+++|+=..-|++++++|. +.+..++. +
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l~-~ 75 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVAK-E 75 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSCH-HHHHHHHH-H
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc----ccCccccccchhccccceEEEEEeCH-HHHHHHHH-H
Confidence 6899999 4689999999999999999999986432 24666667898888888999999983 23445543 3
Q ss_pred HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 252 TIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 252 ~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
.+ .+...+++++.+ ...+.+.+.+++..|.
T Consensus 76 ~~-~~g~k~v~~~~g----~~~~~~~~~a~~~gi~ 105 (116)
T d1y81a1 76 AV-EAGFKKLWFQPG----AESEEIRRFLEKAGVE 105 (116)
T ss_dssp HH-HTTCCEEEECTT----SCCHHHHHHHHHHTCE
T ss_pred HH-hcCCceEEeccc----hhhHHHHHHHHHcCCE
Confidence 33 345557777643 2455678888877775
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.44 E-value=0.0033 Score=54.57 Aligned_cols=93 Identities=12% Similarity=0.047 Sum_probs=58.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCCch--hhh-------hcC--ceecCCHHHHHhcCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPDG--IEK-------SLG--LTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~~--~~~-------~~g--v~~~~sLdelL~~sDvVil~lPl 240 (501)
..+||+|||.|.+|..+|..|...| -+|..||+..... ... ..+ .....+.+ .+++||+|+++...
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~ 82 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA 82 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc
Confidence 4679999999999999999997766 5899999764211 100 011 11222444 46899999997642
Q ss_pred c--h-hhhh--------ccc--HHHHhcCCCCcEEEEcCC
Q psy7383 241 N--E-HNHH--------LIN--EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t--~-~T~~--------lI~--~~~l~~MK~gAilINvaR 267 (501)
. + +++. ++. .+.+..-.+.+++|+++-
T Consensus 83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN 122 (146)
T d1ez4a1 83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (146)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence 1 1 1111 111 234555678999999985
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.43 E-value=0.0011 Score=58.54 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=48.7
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhhcCceecCCHHHHHhcCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKSLGLTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~~gv~~~~sLdelL~~sDvVil~lPl 240 (501)
++++|.|+|.|..+++++..|+..|+ +|.+++|+.... +...++.....+++ ..++|+||.+.|.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi 83 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI 83 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence 67899999999999999999999997 799999986432 23334444433222 3578999988884
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.41 E-value=0.003 Score=54.33 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=59.5
Q ss_pred CeEEeeccchHHHHHHHHHHh--CCCEEEEECCCCCchhhhh----------cCceecCCHHHHHhcCCEEEEeccC--c
Q psy7383 176 DTLGIVGLGRIGSAVALRAKA--FGFNVIFYDPYLPDGIEKS----------LGLTRVYTLQDLLFQSDCVSLHCTL--N 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~a--fG~~Vi~~dr~~~~~~~~~----------~gv~~~~sLdelL~~sDvVil~lPl--t 241 (501)
+||+|||.|.+|+.+|-.+.. +..++..+|.......... .......+..+.+++||+|+++.-. .
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 80 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK 80 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence 489999999999999988764 4468999997642211000 0111122334568999999998632 1
Q ss_pred h-hhh--------hccc--HHHHhcCCCCcEEEEcCCCCccCH
Q psy7383 242 E-HNH--------HLIN--EFTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 242 ~-~T~--------~lI~--~~~l~~MK~gAilINvaRG~vVde 273 (501)
+ +++ .++. .+.+....|++++|+++-. +|.
T Consensus 81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNP--vd~ 121 (140)
T d1a5za1 81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP--VDV 121 (140)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS--HHH
T ss_pred CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCc--HHH
Confidence 1 111 1111 2345556789999998754 544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.39 E-value=0.0014 Score=56.86 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=59.1
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec-----CCHHH-H---HhcCCEEEEeccCchh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV-----YTLQD-L---LFQSDCVSLHCTLNEH 243 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~-----~sLde-l---L~~sDvVil~lPlt~~ 243 (501)
.|.+|.|+|.|.||...++.++.+|++|++.|++..+ +..+++|...+ .+..+ + ....|.++.++.. .+
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~-~~ 105 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS-NS 105 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC-HH
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc-ch
Confidence 4789999999999999999999999999999987533 45566665432 12222 2 2234555554432 22
Q ss_pred hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINva 266 (501)
+ + ...++.++++..+|.++
T Consensus 106 ~---~-~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 106 A---F-GQAIGMARRGGTIALVG 124 (166)
T ss_dssp H---H-HHHHTTEEEEEEEEECC
T ss_pred H---H-HHHHHHhcCCcEEEEEE
Confidence 2 2 35667788888888775
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.38 E-value=0.005 Score=52.77 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=61.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCCchhhh--h---------cCcee-cCCHHHHHhcCCEEEEecc--
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPDGIEK--S---------LGLTR-VYTLQDLLFQSDCVSLHCT-- 239 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~~~~~--~---------~gv~~-~~sLdelL~~sDvVil~lP-- 239 (501)
+||+|||.|.+|+.+|..|...+ -++..||......... . ...+. ..+..+.+++||+|+++.-
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~ 80 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence 47999999999999999998776 4899999876421110 0 01111 1234567899999999853
Q ss_pred Cch-hhhh--------ccc--HHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 240 LNE-HNHH--------LIN--EFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 240 lt~-~T~~--------lI~--~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
..+ +++. ++. .+.+....|++++++++.. +|.-
T Consensus 81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP--vd~~ 124 (142)
T d1guza1 81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP--LDIM 124 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS--HHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCC--hHHH
Confidence 222 1121 110 1234445689999999764 5543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.37 E-value=0.002 Score=56.71 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=61.1
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC-chhhhhcCceecCCHHHH------HhcCCEEEEeccCchhhh
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP-DGIEKSLGLTRVYTLQDL------LFQSDCVSLHCTLNEHNH 245 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~-~~~~~~~gv~~~~sLdel------L~~sDvVil~lPlt~~T~ 245 (501)
.|++|.|.| .|.+|+...+.++.+|++|++.+++.. .+..+++|.+.+.+.++. ....|+|+-+.. ++
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G---~~- 102 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG---KE- 102 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC---TT-
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc---hh-
Confidence 578999999 599999999999999999999987653 345566776544222221 245788877543 11
Q ss_pred hcccHHHHhcCCCCcEEEEcC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINva 266 (501)
+ .+.++.++++..+|.++
T Consensus 103 --~-~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 103 --V-EESLGLLAHGGRLVYIG 120 (171)
T ss_dssp --H-HHHHTTEEEEEEEEEC-
T ss_pred --H-HHHHHHHhcCCcEEEEe
Confidence 2 46678888888888875
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.35 E-value=0.004 Score=53.91 Aligned_cols=97 Identities=22% Similarity=0.301 Sum_probs=62.3
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCC--EEEEECCCCCchhhhhcC----------ceecCCHHHHHhcCCEEEEeccC--
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGF--NVIFYDPYLPDGIEKSLG----------LTRVYTLQDLLFQSDCVSLHCTL-- 240 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~--~Vi~~dr~~~~~~~~~~g----------v~~~~sLdelL~~sDvVil~lPl-- 240 (501)
.||+||| .|.+|+.+|-.|...|. ++..+|....+.....+. .....+..|.+++||+|+++.-.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~ 80 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence 3799999 59999999999987765 788999764332221111 01113456789999999997542
Q ss_pred ch-hhhh-cc--c-------HHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 241 NE-HNHH-LI--N-------EFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 241 t~-~T~~-lI--~-------~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
.+ ++|. ++ | .+.+....+.+++|.++.. ||.-
T Consensus 81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNP--vD~~ 123 (144)
T d1mlda1 81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP--VNST 123 (144)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC--HHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc--hhhh
Confidence 22 2221 11 1 1234445789999999875 6654
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.32 E-value=0.0025 Score=62.95 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=65.8
Q ss_pred CCeEEeeccchHHHHHHHHH-HhCCC-EEEEECCCCCch--hh----hhcCc--eecCCHHHHHhcCCEEEEeccCchhh
Q psy7383 175 GDTLGIVGLGRIGSAVALRA-KAFGF-NVIFYDPYLPDG--IE----KSLGL--TRVYTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L-~afG~-~Vi~~dr~~~~~--~~----~~~gv--~~~~sLdelL~~sDvVil~lPlt~~T 244 (501)
-++++|||.|..++.-++.+ .-++. +|.+|||+.... .. ...|+ ..+.+++++++.||+|++++. ++.+
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~ 206 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAY 206 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSE
T ss_pred CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCC
Confidence 46899999999999888766 45664 799999986421 11 12243 446799999999999998775 3445
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaR 267 (501)
.-+|+. +.+|+|+.+..++.
T Consensus 207 ~Pv~~~---~~l~pG~hI~aiGs 226 (340)
T d1x7da_ 207 ATIITP---DMLEPGMHLNAVGG 226 (340)
T ss_dssp EEEECG---GGCCTTCEEEECSC
T ss_pred Ccccch---hhcCCCCEEeeccc
Confidence 567765 45799999999875
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.14 E-value=0.0037 Score=60.84 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=65.5
Q ss_pred CCeEEeeccchHHHHHHHHHHh-CCC-EEEEECCCCCch-----hhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA-FGF-NVIFYDPYLPDG-----IEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a-fG~-~Vi~~dr~~~~~-----~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
-++|+|||.|..++.-++.+.. +.. +|.+|+|+.... .....++....+.++.+.+||+|+.+.+ .+.-+
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~---s~~P~ 201 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTP---SRKPV 201 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCC---CSSCC
T ss_pred ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEecc---Ccccc
Confidence 3689999999999998888864 554 799999875321 1123344444577888999999988865 45677
Q ss_pred ccHHHHhcCCCCcEEEEcCCC
Q psy7383 248 INEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG 268 (501)
|..+ .+|+|+.++.++.-
T Consensus 202 ~~~~---~l~~G~hv~~iGs~ 219 (320)
T d1omoa_ 202 VKAE---WVEEGTHINAIGAD 219 (320)
T ss_dssp BCGG---GCCTTCEEEECSCC
T ss_pred cchh---hcCCCCeEeecCCc
Confidence 7654 58999999999853
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.10 E-value=0.009 Score=52.02 Aligned_cols=94 Identities=20% Similarity=0.207 Sum_probs=59.1
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCch--hhhh-------cCce---ecCCHHHHHhcCCEEEEeccCc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDG--IEKS-------LGLT---RVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~--~~~~-------~gv~---~~~sLdelL~~sDvVil~lPlt 241 (501)
..||+|||.|.+|+.+|..|...+. ++..||...... .... .+.. ...+..+.+++||+|+++.-..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~ 82 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT 82 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence 3689999999999999988865553 799999865421 1110 1111 1123346789999999987632
Q ss_pred hh---h-----hh-cc--cH-------HHHhcCCCCcEEEEcCCC
Q psy7383 242 EH---N-----HH-LI--NE-------FTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 ~~---T-----~~-lI--~~-------~~l~~MK~gAilINvaRG 268 (501)
.. + +- ++ |. +.+....|++++|+++..
T Consensus 83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP 127 (150)
T d1t2da1 83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP 127 (150)
T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 11 1 11 11 21 224445689999999875
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.09 E-value=0.0019 Score=57.28 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=62.4
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCch--hhhh-------cCc-e-ecCCHHHHHhcCCEEEEec
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPDG--IEKS-------LGL-T-RVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~~--~~~~-------~gv-~-~~~sLdelL~~sDvVil~l 238 (501)
.+..+||+|||.|++|..+|-.|...|. ++..||...+.. .... .+. . ....-.+.+++||+|+++.
T Consensus 17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA 96 (160)
T d1i0za1 17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA 96 (160)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence 4677899999999999999999988876 899999864321 1100 011 0 1112245689999999976
Q ss_pred cCc--h-hhhh-cc--c-------HHHHhcCCCCcEEEEcCCC
Q psy7383 239 TLN--E-HNHH-LI--N-------EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 239 Plt--~-~T~~-lI--~-------~~~l~~MK~gAilINvaRG 268 (501)
-.. + +++- ++ | ...+....+++++|+++..
T Consensus 97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP 139 (160)
T d1i0za1 97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP 139 (160)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence 432 1 2222 11 1 1234445788999999875
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.0025 Score=55.89 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=62.1
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC-chhhhhcCceec-----CCHHHHH------hcCCEEEEeccC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP-DGIEKSLGLTRV-----YTLQDLL------FQSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~-~~~~~~~gv~~~-----~sLdelL------~~sDvVil~lPl 240 (501)
.|.+|.|+|. |.+|....+.++.+|++|++.+++.. .+..+++|...+ .++.+-+ ...|+|+-++.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g- 106 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA- 106 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-
Confidence 5889999995 99999999999999999999886543 245556776433 1233322 12677776653
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.+ . -...++.|+++..+|.++..
T Consensus 107 -~~---~-~~~~~~~l~~~G~iv~~G~~ 129 (174)
T d1yb5a2 107 -NV---N-LSKDLSLLSHGGRVIVVGSR 129 (174)
T ss_dssp -HH---H-HHHHHHHEEEEEEEEECCCC
T ss_pred -HH---H-HHHHHhccCCCCEEEEEecC
Confidence 22 1 24567888999999988643
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.01 E-value=0.0025 Score=56.10 Aligned_cols=88 Identities=16% Similarity=0.114 Sum_probs=58.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEE-EEECCCCC-chhhhhcCceec-----CCHHHHHh-----cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNV-IFYDPYLP-DGIEKSLGLTRV-----YTLQDLLF-----QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~V-i~~dr~~~-~~~~~~~gv~~~-----~sLdelL~-----~sDvVil~lPlt 241 (501)
.|.+|.|+|.|.||...++.++.+|.++ ++.|++.. .+..+++|...+ .+..+.+. ..|+|+-++. +
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G-~ 106 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG-S 106 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC-C
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC-c
Confidence 5889999999999999999999999865 55676543 244556665422 12323222 2588877764 2
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINva 266 (501)
+++ + +..++.++++..++.++
T Consensus 107 ~~~---~-~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 107 PEI---L-KQGVDALGILGKIAVVG 127 (174)
T ss_dssp HHH---H-HHHHHTEEEEEEEEECC
T ss_pred HHH---H-HHHHhcccCceEEEEEe
Confidence 222 1 45677788888888776
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=95.98 E-value=0.012 Score=50.32 Aligned_cols=104 Identities=19% Similarity=0.291 Sum_probs=73.7
Q ss_pred cCCeEEeecc----chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 174 RGDTLGIVGL----GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 174 ~gktVGIVGl----G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
.-|+|+|||. ++.|..+.+.|+.+|+++..+.++.... .-.|...+.++.++-..-|++++++| .+.+..++.
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~--~i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~ 88 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE--ELFGEEAVASLLDLKEPVDILDVFRP-PSALMDHLP 88 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS--EETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHH
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc--eeeceecccchhhccCCCceEEEecc-HHHHHHHHH
Confidence 4578999997 7899999999999999999998764321 12455556688888788899999998 334555553
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
+.. .+...++++..+ ..+ +++.+.+++..|.
T Consensus 89 -~~~-~~g~k~i~~q~G---~~~-~e~~~~a~~~Gi~ 119 (136)
T d1iuka_ 89 -EVL-ALRPGLVWLQSG---IRH-PEFEKALKEAGIP 119 (136)
T ss_dssp -HHH-HHCCSCEEECTT---CCC-HHHHHHHHHTTCC
T ss_pred -HHH-hhCCCeEEEecC---ccC-HHHHHHHHHcCCE
Confidence 333 345678888664 234 4556666665554
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.97 E-value=0.02 Score=50.08 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=67.1
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCC---Cchhhh--------h-cCceecCCHHHHHhcCCEEEEec
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYL---PDGIEK--------S-LGLTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~~--------~-~gv~~~~sLdelL~~sDvVil~l 238 (501)
+|.|++|++||=| ++.++++..|..||++|..+.|.. +..... . ..++...++++.+..+|+|..-.
T Consensus 1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~ 80 (163)
T d1pvva2 1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 80 (163)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence 3789999999964 466888888999999999998753 211110 0 12345568999999999998643
Q ss_pred cCch------h------hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 239 TLNE------H------NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 239 Plt~------~------T~~lI~~~~l~~MK~gAilINva 266 (501)
=... + ....++.+.++++|++++|.-+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl 120 (163)
T d1pvva2 81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL 120 (163)
T ss_dssp CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence 1110 1 12356889999999999988775
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.97 E-value=0.0064 Score=54.54 Aligned_cols=65 Identities=20% Similarity=0.140 Sum_probs=42.8
Q ss_pred eEEeeccchHHHHHHHHHHhC-CCEEEEECC-CCCchhh-------------------hhcCceecCCHHHHHhcCCEEE
Q psy7383 177 TLGIVGLGRIGSAVALRAKAF-GFNVIFYDP-YLPDGIE-------------------KSLGLTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~af-G~~Vi~~dr-~~~~~~~-------------------~~~gv~~~~sLdelL~~sDvVi 235 (501)
||||.|||+||+.++|.+... +++|++.+. ....... ...++.....+.+++.++|+|+
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi 82 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence 799999999999999999865 578877643 3221110 0011222235677778888888
Q ss_pred EeccCc
Q psy7383 236 LHCTLN 241 (501)
Q Consensus 236 l~lPlt 241 (501)
-|.|..
T Consensus 83 ecTG~f 88 (178)
T d1b7go1 83 DTTPNG 88 (178)
T ss_dssp ECCSTT
T ss_pred ECCCCc
Confidence 887753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.92 E-value=0.017 Score=50.98 Aligned_cols=88 Identities=20% Similarity=0.192 Sum_probs=61.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecCC-------HHHHH-----hcCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVYT-------LQDLL-----FQSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~s-------LdelL-----~~sDvVil~lP 239 (501)
.|.+|.|+|.|.||...++.++.+|+ +|++.|++..+ +..+++|...+.+ .+++. ...|+++-++.
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G 107 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 107 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence 57899999999999999999999998 68888887643 5666777643321 22222 34688887765
Q ss_pred CchhhhhcccHHHHhcCCCC-cEEEEcC
Q psy7383 240 LNEHNHHLINEFTIKQMRPG-AFLVNTA 266 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~g-AilINva 266 (501)
. +++ ..+.++.++++ ..++.++
T Consensus 108 ~-~~~----~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 108 T-AQT----LKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp C-HHH----HHHHHHTBCTTTCEEEECC
T ss_pred c-chH----HHHHHHHhhcCCeEEEecC
Confidence 2 222 24567777875 5777775
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.85 E-value=0.0064 Score=53.65 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=64.1
Q ss_pred CeEEeeccchHHHH-HHHHHHhCC--CEEE-EECCCCCc--hhhhhcCce-ecCCHHHHHh--cCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGLGRIGSA-VALRAKAFG--FNVI-FYDPYLPD--GIEKSLGLT-RVYTLQDLLF--QSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGlG~IG~~-iA~~L~afG--~~Vi-~~dr~~~~--~~~~~~gv~-~~~sLdelL~--~sDvVil~lPlt~~T~~ 246 (501)
.+|||||+|.+|+. .+..++.+. ++|. ++|++... ...+..+.. .+.+++|+++ +.|+|++++|... +.
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~--h~ 81 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVEL--NL 81 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGG--HH
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccc--cc
Confidence 47999999999987 477787654 4665 57876532 223344543 4568999987 4788999988432 22
Q ss_pred cccHHHHhcCCCCcEEEEcC-CCCccCHHHHHHHHHcCCce
Q psy7383 247 LINEFTIKQMRPGAFLVNTA-RGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINva-RG~vVde~aL~~aL~~g~I~ 286 (501)
-+-...++. .-.+|+.-= --.+-+...|.+..++....
T Consensus 82 ~~~~~al~~--gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~ 120 (181)
T d1zh8a1 82 PFIEKALRK--GVHVICEKPISTDVETGKKVVELSEKSEKT 120 (181)
T ss_dssp HHHHHHHHT--TCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred ccccccccc--chhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence 222333333 124555431 11234555677777665543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.82 E-value=0.018 Score=50.65 Aligned_cols=89 Identities=18% Similarity=0.116 Sum_probs=58.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceecC-------CHHHHH-----hcCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRVY-------TLQDLL-----FQSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~~-------sLdelL-----~~sDvVil~lP 239 (501)
.|.+|.|+|.|.+|...++.++.+|+ +|++.|++..+ +..+++|...+. ..+++. ...|+++.++.
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g 108 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIG 108 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSC
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCC
Confidence 58899999999999999999999995 89999987644 566666654321 122221 25787777654
Q ss_pred CchhhhhcccHHHHhcCC-CCcEEEEcCC
Q psy7383 240 LNEHNHHLINEFTIKQMR-PGAFLVNTAR 267 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK-~gAilINvaR 267 (501)
..... ...+..+. .+..+|.++-
T Consensus 109 ~~~~~-----~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 109 HLETM-----IDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp CHHHH-----HHHHTTSCTTTCEEEECSC
T ss_pred chHHH-----HHHHHHhhcCCeEEEEEEc
Confidence 22211 23334444 3367777763
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0035 Score=49.23 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=31.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
|||||||-|-.|+-++..++.+|.+|+++|+...
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 6899999999999999999999999999998754
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.72 E-value=0.0069 Score=48.89 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=47.0
Q ss_pred cCCeEEeeccchHH-HHHHHHHHhCCCEEEEECCCCCch--hhhhcCceecC-CHHHHHhcCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIG-SAVALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVY-TLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG-~~iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~-sLdelL~~sDvVil~lP 239 (501)
+.++|=|||.|.+| .++|+.|+..|++|.++|...... ...+.|+.... .-.+.+.+.|+|+..-.
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~A 76 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSA 76 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTT
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCC
Confidence 46889999999999 667999999999999999875432 23345654321 22344677888776543
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=95.72 E-value=0.0041 Score=57.07 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=46.7
Q ss_pred cCCeEEeeccchHHHH-HHHHHHhC-CCEEE-EECCCCCc--hhhhhcCce-----ecCCHHHHHh--cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSA-VALRAKAF-GFNVI-FYDPYLPD--GIEKSLGLT-----RVYTLQDLLF--QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~-iA~~L~af-G~~Vi-~~dr~~~~--~~~~~~gv~-----~~~sLdelL~--~sDvVil~lPlt 241 (501)
+--+|||||+|.||+. ++..++.. +++|+ ++|++... ...+..++. .+.+++|++. +.|+|++++|..
T Consensus 32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~ 111 (221)
T d1h6da1 32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS 111 (221)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence 3358999999999974 66666655 77876 67876532 233344432 3468899986 578899998843
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=95.71 E-value=0.009 Score=51.32 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=57.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCchhh--hh-------c----CceecCCHHHHHhcCCEEEEeccC-
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPDGIE--KS-------L----GLTRVYTLQDLLFQSDCVSLHCTL- 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~~~~--~~-------~----gv~~~~sLdelL~~sDvVil~lPl- 240 (501)
+||+|||.|.+|..+|-.|...+. +++.+|........ .. . .+....+.+ .+++||+|+++...
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvitag~~ 80 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTSGAP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECCSCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEeeecc
Confidence 689999999999999988866554 89999987642111 00 0 122223344 47899999998843
Q ss_pred -ch-hhh-hcc--cH-------HHHhcCCCCcEEEEcCCCCccCH
Q psy7383 241 -NE-HNH-HLI--NE-------FTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 241 -t~-~T~-~lI--~~-------~~l~~MK~gAilINvaRG~vVde 273 (501)
.+ +++ .++ |. +.+.+-.|.+++|+++.. +|.
T Consensus 81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNP--vDv 123 (142)
T d1uxja1 81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP--LDA 123 (142)
T ss_dssp ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSS--HHH
T ss_pred CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCc--hHH
Confidence 21 122 111 11 233444678999998764 544
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.56 E-value=0.0087 Score=51.56 Aligned_cols=96 Identities=21% Similarity=0.191 Sum_probs=60.4
Q ss_pred CeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCCc--hhhh-------hcC----ceecCCHHHHHhcCCEEEEeccC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLPD--GIEK-------SLG----LTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~~--~~~~-------~~g----v~~~~sLdelL~~sDvVil~lPl 240 (501)
+||+|||.|.+|..+|-.+...| -++..+|..... +... ... +....+ .|.+++||+|++..-.
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag~ 79 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEeccc
Confidence 48999999999999999887655 479999976432 1100 011 111223 3689999999998742
Q ss_pred --chh---------hhhccc--HHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 241 --NEH---------NHHLIN--EFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 241 --t~~---------T~~lI~--~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
++. +..++. .+.+....+.+++|+++.. +|.-
T Consensus 80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNP--vD~~ 124 (142)
T d1ojua1 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP--MDVM 124 (142)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS--HHHH
T ss_pred cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCC--hHHH
Confidence 221 111111 2344556788999999874 5443
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.53 E-value=0.004 Score=54.48 Aligned_cols=104 Identities=17% Similarity=0.100 Sum_probs=60.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCC----CEEEEECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCchhhhhccc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG----FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG----~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~~T~~lI~ 249 (501)
.+|||||+|.||+..++.++... ..+...+.. .......... ..+++|++. +.|+|++++|.. +..-+-
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~e~l~~~~iD~V~I~tp~~--~H~~~~ 82 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSR--RELGSLDEVR-QISLEDALRSQEIDVAYICSESS--SHEDYI 82 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECS--SCCCEETTEE-BCCHHHHHHCSSEEEEEECSCGG--GHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccch--HHHHHhhccC-cCCHHHHHhCCCcchhhhccccc--cccccc
Confidence 37999999999999888886532 333333222 1111222333 348999987 458899998843 333333
Q ss_pred HHHHhcCCCCcEEEEcC-CCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGAFLVNTA-RGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gAilINva-RG~vVde~aL~~aL~~g~I~ 286 (501)
...++.=| .+|+.-= --.+-+.+.|+++.++.++.
T Consensus 83 ~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~ 118 (172)
T d1lc0a1 83 RQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV 118 (172)
T ss_dssp HHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred ccccccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence 44444322 3665531 12345666777776666654
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.51 E-value=0.012 Score=46.90 Aligned_cols=63 Identities=25% Similarity=0.241 Sum_probs=45.2
Q ss_pred CeEEeeccchHHH-HHHHHHHhCCCEEEEECCCCCch--hhhhcCceecC-CHHHHHhcCCEEEEec
Q psy7383 176 DTLGIVGLGRIGS-AVALRAKAFGFNVIFYDPYLPDG--IEKSLGLTRVY-TLQDLLFQSDCVSLHC 238 (501)
Q Consensus 176 ktVGIVGlG~IG~-~iA~~L~afG~~Vi~~dr~~~~~--~~~~~gv~~~~-sLdelL~~sDvVil~l 238 (501)
++|=|||.|.+|. .+|+.|+..|++|.++|....+. ..++.|++... .-.+.+.+.|+||..-
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss 68 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP 68 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence 6788999999995 88999999999999999876432 23456654321 1123456788887653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.51 E-value=0.0048 Score=53.91 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=60.6
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCC-chhhhhcCceecC-----CHHHHHh-----cCCEEEEeccCc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLP-DGIEKSLGLTRVY-----TLQDLLF-----QSDCVSLHCTLN 241 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~-~~~~~~~gv~~~~-----sLdelL~-----~sDvVil~lPlt 241 (501)
.|.+|.|+|.|.+|...++.++.+|. +|++.|++.. .+..++.|...+. +.++.++ ..|+|+.++...
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~ 111 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ 111 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence 47899999999999999999999886 6777887653 2445556653221 1233333 367887776522
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.+ + ...++.++++..++.++-+
T Consensus 112 -~~---~-~~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 112 -AT---V-DYTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp -HH---H-HHGGGGEEEEEEEEECCCS
T ss_pred -hH---H-HHHHHHHhCCCEEEEEeCc
Confidence 21 1 4457778888888888643
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.43 E-value=0.065 Score=45.99 Aligned_cols=162 Identities=10% Similarity=0.087 Sum_probs=81.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCE-EEEECCCCCchhhhhcCceec--------CCHHHHHhcCCEEEEeccCchhh
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFN-VIFYDPYLPDGIEKSLGLTRV--------YTLQDLLFQSDCVSLHCTLNEHN 244 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~-Vi~~dr~~~~~~~~~~gv~~~--------~sLdelL~~sDvVil~lPlt~~T 244 (501)
.+|||.|||-|.+|...|..|+.+|++ |.+|++.....-......... ............+...... .
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~ 79 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSL---S 79 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCB---S
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEe---c
Confidence 579999999999999999999999995 999997653211111111000 0111222222222222211 1
Q ss_pred hhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCC--CCCCeEEecCC--CCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLK--DAPNILCTPHA--AFY 320 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~--~~pNVilTPHi--Ag~ 320 (501)
+............-.+++|-++.+................+. . ...... +.... ..++|+.---+ ++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~----~-~~~~~~---~~~~~~~~~~~v~~~g~vigg~~ 151 (196)
T d1gtea4 80 ENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFN----R-WDLPEV---DPETMQTSEPWVFAGGDIVGMAN 151 (196)
T ss_dssp TTSBCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBC----T-TSSBCC---CTTTCBCSSTTEEECSGGGCSCC
T ss_pred cceeeeehhhccccceeeEEeccccCCccccccccccccccc----c-ccceec---cccccCCCcccccccccccCCcc
Confidence 222222333334457788888877665554444433333222 0 011110 11111 22334322222 233
Q ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy7383 321 SEASCTELREMAASEIRRAIVGRIPD 346 (501)
Q Consensus 321 T~ea~~~~~~~~~~ni~~~l~G~~p~ 346 (501)
|--........++..+.+|+.++.+.
T Consensus 152 ~av~a~~~g~~~a~~v~r~~~~~~~~ 177 (196)
T d1gtea4 152 TTVESVNDGKQASWYIHKYIQAQYGA 177 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhhhehhHhhccHhhCCC
Confidence 33333445667788899998877554
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.42 E-value=0.031 Score=47.85 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=72.2
Q ss_pred cCCeEEeecc----chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 174 RGDTLGIVGL----GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 174 ~gktVGIVGl----G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
+-|+|+|||. +..|..+++.|+.+|++|+..+++.. .-.|...+.+++|+-..-|++++++|.. .+..++
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~----~i~G~~~~~sl~dlp~~iD~v~i~vp~~-~~~~~~- 91 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE----EVLGRKCYPSVLDIPDKIEVVDLFVKPK-LTMEYV- 91 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS----EETTEECBSSGGGCSSCCSEEEECSCHH-HHHHHH-
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc----ccCCCcccccccccCccceEEEEEeCHH-HHHHHH-
Confidence 4689999996 57999999999999999999998643 2345666678999888899999999832 333444
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCce
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIR 286 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~ 286 (501)
++.+ .+....++++.+- .++ .+.+.+++..|.
T Consensus 92 ~e~~-~~g~k~v~~~~G~---~~e-e~~~~a~~~gi~ 123 (139)
T d2d59a1 92 EQAI-KKGAKVVWFQYNT---YNR-EASKKADEAGLI 123 (139)
T ss_dssp HHHH-HHTCSEEEECTTC---CCH-HHHHHHHHTTCE
T ss_pred HHHH-HhCCCEEEEeccc---cCH-HHHHHHHHCCCE
Confidence 3333 3456677776652 444 445556665554
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.42 E-value=0.0069 Score=52.85 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=60.1
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC-chhhhhcCceec-----CCHHH-HH-----hcCCEEEEeccC
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP-DGIEKSLGLTRV-----YTLQD-LL-----FQSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~-~~~~~~~gv~~~-----~sLde-lL-----~~sDvVil~lPl 240 (501)
.|++|.|.| .|.+|+..++.++.+|++|++.+++.+ .+..++.|...+ .++.+ +. ...|+|+-++.
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g- 103 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA- 103 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEeccc-
Confidence 478999988 599999999999999999999876543 234455564432 12322 22 23688877664
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.++ -.+.++.|+++..+|+++.
T Consensus 104 -~~~----~~~~~~~l~~~G~~v~~G~ 125 (183)
T d1pqwa_ 104 -GEA----IQRGVQILAPGGRFIELGK 125 (183)
T ss_dssp -THH----HHHHHHTEEEEEEEEECSC
T ss_pred -chH----HHHHHHHhcCCCEEEEEcc
Confidence 121 1456778888888888864
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.011 Score=50.61 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=54.2
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCCCch---h--hhhcCceec----CC---HHHH-HhcCCEEEEeccCchh
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDG---I--EKSLGLTRV----YT---LQDL-LFQSDCVSLHCTLNEH 243 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~---~--~~~~gv~~~----~s---Ldel-L~~sDvVil~lPlt~~ 243 (501)
.+-|+|+|.+|+.+++.|...|.+|++.|...... . ....++..+ .+ |+++ +.++|.|+++++...
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~- 83 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA- 83 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH-
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHH-
Confidence 58999999999999999999999999998654321 1 112344322 12 2222 568999998877443
Q ss_pred hhhcccHHHHhcCCCCcEEE
Q psy7383 244 NHHLINEFTIKQMRPGAFLV 263 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilI 263 (501)
.+++-....+.+.+...+|
T Consensus 84 -~n~~~~~~~r~~~~~~~ii 102 (153)
T d1id1a_ 84 -DNAFVVLSAKDMSSDVKTV 102 (153)
T ss_dssp -HHHHHHHHHHHHTSSSCEE
T ss_pred -HHHHHHHHHHHhCCCCceE
Confidence 3444344555555554333
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=95.35 E-value=0.0083 Score=52.59 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=42.1
Q ss_pred CeEEeeccchHHHHHHHH--HHh---C-CCEEEEECCCCCchh-h---------hhcCceecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVGLGRIGSAVALR--AKA---F-GFNVIFYDPYLPDGI-E---------KSLGLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~--L~a---f-G~~Vi~~dr~~~~~~-~---------~~~gv~~~~sLdelL~~sDvVil~lP 239 (501)
+||.|||.|.+|..++-. ++. + .-++..+|....+.. . ....+....+.++.+++||+|++++-
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 479999999988666643 222 2 358999997643211 0 01112233567889999999999875
Q ss_pred C
Q psy7383 240 L 240 (501)
Q Consensus 240 l 240 (501)
.
T Consensus 81 ~ 81 (162)
T d1up7a1 81 P 81 (162)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.30 E-value=0.019 Score=47.08 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=48.6
Q ss_pred CCeEEeecc----------chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEe
Q psy7383 175 GDTLGIVGL----------GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 175 gktVGIVGl----------G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~ 237 (501)
.|+|||+|+ ..-.-.+.+.|...|++|.+|||...... ...+.....++++++..||+|++.
T Consensus 15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~-~~~~~~~~~~l~~~~~~sDiII~~ 86 (108)
T d1dlja3 15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE-SEDQSVLVNDLENFKKQANIIVTN 86 (108)
T ss_dssp SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC-TTCCSEECCCHHHHHHHCSEEECS
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH-hccCCEEEeCHHHHHhhCCEEEEc
Confidence 368999998 45678899999999999999999975421 223455567899999999987654
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.26 E-value=0.0048 Score=53.40 Aligned_cols=95 Identities=17% Similarity=0.239 Sum_probs=59.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCchhhh----h-----cC---ceecCCHHHHHhcCCEEEEeccCc
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPDGIEK----S-----LG---LTRVYTLQDLLFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~~~~~----~-----~g---v~~~~sLdelL~~sDvVil~lPlt 241 (501)
.||+|||.|++|..+|-.+...|. ++..+|......... . .+ +....+. +.+++||+|+++.-..
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~ 80 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR 80 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence 479999999999999998876555 899999765321110 0 11 1122233 4588999999987531
Q ss_pred --h-hhhh-cc--c-------HHHHhcCCCCcEEEEcCCCCccCH
Q psy7383 242 --E-HNHH-LI--N-------EFTIKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 242 --~-~T~~-lI--~-------~~~l~~MK~gAilINvaRG~vVde 273 (501)
+ +++. ++ | ...+....+++++|+++.. +|.
T Consensus 81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP--vDv 123 (143)
T d1llda1 81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP--VDI 123 (143)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS--HHH
T ss_pred cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCc--hHH
Confidence 1 1211 11 1 1334555788999998753 554
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.21 E-value=0.025 Score=48.80 Aligned_cols=97 Identities=22% Similarity=0.261 Sum_probs=59.8
Q ss_pred CeEEeecc-chHHHHHHHHHH---hCCCEEEEECCCCCc-hhhhhc-------Ccee--cCCHHHHHhcCCEEEEeccC-
Q psy7383 176 DTLGIVGL-GRIGSAVALRAK---AFGFNVIFYDPYLPD-GIEKSL-------GLTR--VYTLQDLLFQSDCVSLHCTL- 240 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~---afG~~Vi~~dr~~~~-~~~~~~-------gv~~--~~sLdelL~~sDvVil~lPl- 240 (501)
+||+|||. |.+|+.+|-.|. .+.-++..+|..... +....+ .... ..+..+.+++||+|+++.-.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~ 80 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence 48999995 999999998764 356799999965322 111110 0011 12334578999999998742
Q ss_pred -chh-hh-hcc--c-------HHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 241 -NEH-NH-HLI--N-------EFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 241 -t~~-T~-~lI--~-------~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
++. ++ .++ | .+.+....|++++|.++.. +|.-
T Consensus 81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNP--vD~m 124 (145)
T d2cmda1 81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP--VNTT 124 (145)
T ss_dssp CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS--HHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC--chHH
Confidence 221 11 122 1 2345556789999999875 6644
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.19 E-value=0.031 Score=48.96 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=39.0
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCcee
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTR 220 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~ 220 (501)
.|.+|.|+|.|.+|...++.++.+|. +|++.|+...+ +..+++|.+.
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~ 75 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE 75 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE
Confidence 58899999999999999999999996 79999987543 5566677553
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.052 Score=47.24 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=66.4
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCC---chh-------hhhcC--ceecCCHHHHHhcCCEEEEec
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLP---DGI-------EKSLG--LTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~---~~~-------~~~~g--v~~~~sLdelL~~sDvVil~l 238 (501)
+|.|+||++||=++ +-++++..+..||+++.++.+..- ... ....+ +....++++.+..+|+|....
T Consensus 1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~ 80 (170)
T d1otha2 1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT 80 (170)
T ss_dssp CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence 37899999999753 446666666789999999887531 111 11112 445678999999999998765
Q ss_pred cCchh------------hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 239 TLNEH------------NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 239 Plt~~------------T~~lI~~~~l~~MK~gAilINvaR 267 (501)
-.... ....++.+.++.+|++++|.-+.-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHplP 121 (170)
T d1otha2 81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP 121 (170)
T ss_dssp SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSC
T ss_pred eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCCC
Confidence 43211 123467888899999999888753
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.18 E-value=0.028 Score=48.47 Aligned_cols=94 Identities=11% Similarity=0.144 Sum_probs=64.2
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhCCCEEEEECCCC---C-chhhhh--cCceecCCHHHHHhcCCEEEEeccCch-
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAFGFNVIFYDPYL---P-DGIEKS--LGLTRVYTLQDLLFQSDCVSLHCTLNE- 242 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~afG~~Vi~~dr~~---~-~~~~~~--~gv~~~~sLdelL~~sDvVil~lPlt~- 242 (501)
|.|+||+|||= +++.++++..+..||++++.+-+.. . ...... ..+....++++.++++|+|...---..
T Consensus 1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~ 80 (153)
T d1pg5a2 1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER 80 (153)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence 57899999996 5699999999999999876554321 1 111122 234556789999999999875321100
Q ss_pred ----------hhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 243 ----------HNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 243 ----------~T~~lI~~~~l~~MK~gAilINva 266 (501)
.....++.+.++.+|++++|.-+.
T Consensus 81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L 114 (153)
T d1pg5a2 81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL 114 (153)
T ss_dssp SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence 011236888888888888887775
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.16 E-value=0.011 Score=52.70 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=24.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCC-CEEEEEC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG-FNVIFYD 205 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG-~~Vi~~d 205 (501)
++|||-|||+||+.+.|.+...+ ++|.+.+
T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaIn 32 (171)
T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVS 32 (171)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEE
T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEe
Confidence 47999999999999999987654 7777654
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=95.06 E-value=0.092 Score=45.24 Aligned_cols=94 Identities=11% Similarity=0.169 Sum_probs=63.7
Q ss_pred ccCCeEEeecc--chHHHHHHHHHHhCCCEEEEECCCC---Cchh-------hhhc--CceecCCHHHHHhcCCEEEEec
Q psy7383 173 IRGDTLGIVGL--GRIGSAVALRAKAFGFNVIFYDPYL---PDGI-------EKSL--GLTRVYTLQDLLFQSDCVSLHC 238 (501)
Q Consensus 173 L~gktVGIVGl--G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~-------~~~~--gv~~~~sLdelL~~sDvVil~l 238 (501)
|.|++|++||= .++-++++..+..||+++..+.|.. .... .... .+....++++.++.+|+|..-.
T Consensus 1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161)
T d1vlva2 1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161)
T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence 57999999993 5899999999999999999998752 1111 1111 2345568999999999998754
Q ss_pred cCch----h--------hhh-cccHHHHhcCCCCcEEEEcC
Q psy7383 239 TLNE----H--------NHH-LINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 239 Plt~----~--------T~~-lI~~~~l~~MK~gAilINva 266 (501)
--.. + ... +.+...+..+|++++|.-+.
T Consensus 81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l 121 (161)
T d1vlva2 81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL 121 (161)
T ss_dssp CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence 3110 0 111 22344445678889988775
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.98 E-value=0.0092 Score=52.55 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=62.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC--EEEEECCCCCch------hhh---hcCc---eecCCHHHHHhcCCEEEEe
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF--NVIFYDPYLPDG------IEK---SLGL---TRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~--~Vi~~dr~~~~~------~~~---~~gv---~~~~sLdelL~~sDvVil~ 237 (501)
.+...+|+|||.|.+|..+|-.|...|. ++..+|...... +.. ..+. ....+ .+.+++||+|+++
T Consensus 16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~~adivvit 94 (159)
T d2ldxa1 16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSANSKLVIIT 94 (159)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGTTEEEEEEC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhccccEEEEe
Confidence 3566789999999999999999987765 899999764321 110 1111 11123 3456899999987
Q ss_pred ccC--ch-hhhh-cc--cHHH-------HhcCCCCcEEEEcCCCCccCH
Q psy7383 238 CTL--NE-HNHH-LI--NEFT-------IKQMRPGAFLVNTARGGLVDD 273 (501)
Q Consensus 238 lPl--t~-~T~~-lI--~~~~-------l~~MK~gAilINvaRG~vVde 273 (501)
.-. .+ +++. ++ |.+. +....+++++|+++.. +|.
T Consensus 95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNP--vDv 141 (159)
T d2ldxa1 95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP--VDI 141 (159)
T ss_dssp CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSS--HHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCc--HHH
Confidence 643 11 2221 12 2222 3345789999999874 554
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.97 E-value=0.024 Score=52.90 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=33.8
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++-|.| .+.||+++|+.|...|++|+..+++.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~ 40 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE 40 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999998 67799999999999999999999864
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.86 E-value=0.018 Score=50.92 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=43.4
Q ss_pred CCeEEeeccchHHHHHHH---HHH--hC-CCEEEEECCCCCchh---------hhh----cCceecCCHHHHHhcCCEEE
Q psy7383 175 GDTLGIVGLGRIGSAVAL---RAK--AF-GFNVIFYDPYLPDGI---------EKS----LGLTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~---~L~--af-G~~Vi~~dr~~~~~~---------~~~----~gv~~~~sLdelL~~sDvVi 235 (501)
..||+|||.|.+|..++- .++ .+ +.++..+|....... ... ..+....+++|.|++||+|+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 468999999999976432 332 23 459999998743210 011 12334468899999999999
Q ss_pred Eecc
Q psy7383 236 LHCT 239 (501)
Q Consensus 236 l~lP 239 (501)
+..-
T Consensus 82 ~~~~ 85 (171)
T d1obba1 82 NTAM 85 (171)
T ss_dssp ECCC
T ss_pred eecc
Confidence 8754
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.78 E-value=0.028 Score=47.47 Aligned_cols=108 Identities=11% Similarity=0.124 Sum_probs=72.9
Q ss_pred ccCCeEEeecc----chHHHHHHHHHHhCC-CEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 173 IRGDTLGIVGL----GRIGSAVALRAKAFG-FNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 173 L~gktVGIVGl----G~IG~~iA~~L~afG-~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
++=++|+|||. +..|..+.+.|+..| .+|+..+++..+ -.|...+.+++|+=..-|++++++|. +.+..+
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~----i~G~~~y~sl~dlp~~vDlvvi~vp~-~~~~~~ 80 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE----VQGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDT 80 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE----ETTEECBSSTTSCSSCCSEEEECSCH-HHHHHH
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc----cCCeEeecchhhcCCCCceEEEecCh-HHhHHH
Confidence 45689999996 899999999998866 699999987532 34666677899888889999999983 345555
Q ss_pred ccHHHHhcCCCCcEEEEcCCCCc-----cCHHHHHHHHHcCCce
Q psy7383 248 INEFTIKQMRPGAFLVNTARGGL-----VDDDSLAAALKQGRIR 286 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaRG~v-----Vde~aL~~aL~~g~I~ 286 (501)
+ ++..+.=-+.++++.-+-++. ..++.|.+..++..+.
T Consensus 81 ~-~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir 123 (129)
T d2csua1 81 L-IQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR 123 (129)
T ss_dssp H-HHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred H-HHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE
Confidence 5 333333333444444333332 2334566666665543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.72 E-value=0.037 Score=47.63 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=52.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCceec-------CCHHHHH-----hcCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLTRV-------YTLQDLL-----FQSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~~~-------~sLdelL-----~~sDvVil~lP 239 (501)
.|.+|.|+|.|.+|...++.++.+|. +|++.|++..+ +..+++|...+ .+.++.+ ...|+|+-++.
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G 107 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 107 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCC
Confidence 58899999999999999999999996 67777776533 45666665433 1222222 24677777654
Q ss_pred CchhhhhcccHHHHhcCCCCcE
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAF 261 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAi 261 (501)
. +. . .+..+..+++|..
T Consensus 108 ~-~~---~-~~~~~~~~~~g~~ 124 (176)
T d2fzwa2 108 N-VK---V-MRAALEACHKGWG 124 (176)
T ss_dssp C-HH---H-HHHHHHTBCTTTC
T ss_pred C-HH---H-HHHHHHhhcCCce
Confidence 2 11 1 1344555565533
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.64 E-value=0.03 Score=49.18 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=62.6
Q ss_pred CeEEeeccchHH--HHHHHHHHhC---C-CEEEEECCCCCchhh-----------hhcC----ceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGLGRIG--SAVALRAKAF---G-FNVIFYDPYLPDGIE-----------KSLG----LTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGlG~IG--~~iA~~L~af---G-~~Vi~~dr~~~~~~~-----------~~~g----v~~~~sLdelL~~sDvV 234 (501)
.||.|||.|..| ..++..++.. . -++..+|........ ...+ +....+..+.+++||+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 479999999776 5566666543 2 489999976532100 0111 22345778889999999
Q ss_pred EEeccCchh-----------hhhc--------------------c--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHH
Q psy7383 235 SLHCTLNEH-----------NHHL--------------------I--NEFTIKQMRPGAFLVNTARGGLVDDDSLAAA 279 (501)
Q Consensus 235 il~lPlt~~-----------T~~l--------------------I--~~~~l~~MK~gAilINvaRG~vVde~aL~~a 279 (501)
+++...... ..++ + =.+.+....|+++|||++-.-=+-..++.+.
T Consensus 82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~~k~ 159 (169)
T d1s6ya1 82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY 159 (169)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHH
T ss_pred EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHHHHH
Confidence 999864221 0111 1 0245556689999999987632333344443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.64 E-value=0.053 Score=46.90 Aligned_cols=46 Identities=33% Similarity=0.448 Sum_probs=37.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCce
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLT 219 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~ 219 (501)
.|.+|.|+|.|.+|...+..++.+|. +|++.|++..+ +..++.|..
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~ 75 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 75 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe
Confidence 58899999999999999999999985 89999987643 445555543
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.58 E-value=0.025 Score=50.13 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=24.5
Q ss_pred CeEEeeccchHHHHHHHHHHhC-CCEEEEEC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAF-GFNVIFYD 205 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~af-G~~Vi~~d 205 (501)
.||||.|||+||+.++|.+... .++|.+.+
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaIN 33 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGIT 33 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence 4799999999999999998754 47776654
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.58 E-value=0.088 Score=47.47 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=93.2
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCC-----CCchhhhhcCceecCCHHHHHhcCCEEEEe-ccCchhhhhcc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY-----LPDGIEKSLGLTRVYTLQDLLFQSDCVSLH-CTLNEHNHHLI 248 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~-----~~~~~~~~~gv~~~~sLdelL~~sDvVil~-lPlt~~T~~lI 248 (501)
.+||++. =..+++|...|++|++=.-. ..++.-.+.|++-+++.++++.++|+|+.. .|...+ .
T Consensus 13 E~RValt------P~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~ 82 (194)
T d1l7da2 13 EDRVAIS------PEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----E 82 (194)
T ss_dssp CCCCSCC------HHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----G
T ss_pred CcEeecC------HHHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----c
Confidence 4555554 36788999999999985421 223334556887777889999999988754 343322 2
Q ss_pred cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCCCcHHHHHHH
Q psy7383 249 NEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAFYSEASCTEL 328 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg~T~ea~~~~ 328 (501)
+.+.+++||+|+++|..-- .....+++++|.+.+|...++|....- +.=-.+| ++++ .+.=+-.+.
T Consensus 83 ~~~ei~~lk~g~~li~~l~--p~~~~~~~~~l~~~~it~~a~e~ipRi------sraQ~md--~Lss----qa~iaG~~a 148 (194)
T d1l7da2 83 GTDEVALIKEGAVLMCHLG--ALTNRPVVEALTKRKITAYAMELMPRI------SRAQSMD--ILSS----QSNLVAADA 148 (194)
T ss_dssp SCCGGGGSCTTCEEEEECC--GGGCHHHHHHHHHTTCEEEEGGGCCCS------GGGGGGC--HHHH----HHHHGHHHH
T ss_pred chhHhhhccCceEEEEecc--cccchhHHHHHHhcCceEEeeeccccc------CCCCccC--CcCc----chhhhhHhH
Confidence 3457889999999998754 467888999999999998777765210 1111111 1222 111122355
Q ss_pred HHHHHHHHHHHHh
Q psy7383 329 REMAASEIRRAIV 341 (501)
Q Consensus 329 ~~~~~~ni~~~l~ 341 (501)
..++++|+-+|+.
T Consensus 149 ~~~~a~~l~~~~~ 161 (194)
T d1l7da2 149 SPLFAKNLLNFLT 161 (194)
T ss_dssp HHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhhh
Confidence 6678888888874
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=94.51 E-value=0.062 Score=46.09 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=57.0
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCC--EEEEECCCCCchh----hhh------cC--ce-ecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGF--NVIFYDPYLPDGI----EKS------LG--LT-RVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~--~Vi~~dr~~~~~~----~~~------~g--v~-~~~sLdelL~~sDvVil~lP 239 (501)
.||+||| .|.+|+.+|-.+...+. ++..+|....+.. ... +. .. ...+. +.+++||+|+++.-
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG 79 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG 79 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence 4799999 69999999999977665 8999996432111 111 10 11 11233 44689999998754
Q ss_pred C--ch-hh--------hhccc--HHHHhcCCCCcEEEEcCCC
Q psy7383 240 L--NE-HN--------HHLIN--EFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 240 l--t~-~T--------~~lI~--~~~l~~MK~gAilINvaRG 268 (501)
. .+ ++ ..++. .+.+....+++++|.++..
T Consensus 80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNP 121 (142)
T d1o6za1 80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP 121 (142)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecCh
Confidence 2 22 12 11221 2345567788999999664
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.49 E-value=0.016 Score=48.17 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=52.0
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceec----CCHHHH----HhcCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRV----YTLQDL----LFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~----~sLdel----L~~sDvVil~lPlt~~T~~ 246 (501)
|.+-|+|+|.+|+.+++.|++.+ |.+.+..... ......|+..+ .+.+-| +.+++.|+++.+... .+
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~--~n 76 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDS--ET 76 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHH--HH
T ss_pred CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchh--hh
Confidence 56889999999999999998665 5555554432 22233454322 122222 668999998877443 44
Q ss_pred cccHHHHhcCCCCcEEE
Q psy7383 247 LINEFTIKQMRPGAFLV 263 (501)
Q Consensus 247 lI~~~~l~~MK~gAilI 263 (501)
++-...++.+.+...+|
T Consensus 77 ~~~~~~~r~~~~~~~ii 93 (129)
T d2fy8a1 77 IHCILGIRKIDESVRII 93 (129)
T ss_dssp HHHHHHHHHHCSSSCEE
T ss_pred HHHHHHHHHHCCCceEE
Confidence 44455666666664443
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.44 E-value=0.027 Score=51.45 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=33.6
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.|+||++-|.|-+ .||+++|++|...|++|++.+++..
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS 40 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence 5899999999765 5999999999999999999998754
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.41 E-value=0.077 Score=47.10 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=65.8
Q ss_pred cccCCeEEeecc--chHHHHHHHHHHhCCCEEEEECCCC---Cchhh-------hh--cCceecCCHHHHHhcCCEEEEe
Q psy7383 172 RIRGDTLGIVGL--GRIGSAVALRAKAFGFNVIFYDPYL---PDGIE-------KS--LGLTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 172 ~L~gktVGIVGl--G~IG~~iA~~L~afG~~Vi~~dr~~---~~~~~-------~~--~gv~~~~sLdelL~~sDvVil~ 237 (501)
.|.|.||++||= -++..+++..+..||++|.+..|.. ..... .. ..+....++++.++++|+|..-
T Consensus 2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~ 81 (185)
T d1dxha2 2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD 81 (185)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence 378999999994 4899999999999999999998742 21111 11 2234557899999999998765
Q ss_pred ccCc----hh---------h-hhcccHHHHhcCCCCcEEEEcC
Q psy7383 238 CTLN----EH---------N-HHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 238 lPlt----~~---------T-~~lI~~~~l~~MK~gAilINva 266 (501)
.=.. .+ . ..+.++..+..+|++++|.-+.
T Consensus 82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L 124 (185)
T d1dxha2 82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL 124 (185)
T ss_dssp CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence 4311 00 0 1222344556688999998886
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=94.33 E-value=0.031 Score=51.62 Aligned_cols=86 Identities=23% Similarity=0.225 Sum_probs=54.7
Q ss_pred ccCCeEEeecc-c--hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 173 IRGDTLGIVGL-G--RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 173 L~gktVGIVGl-G--~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
|+||++.|.|- | .||.++|+.|...|++|+..+++.... + .+..+.+....+.++..-+....+...+++
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~--~-----~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~ 75 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLE--K-----RVRPIAQELNSPYVYELDVSKEEHFKSLYN 75 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTH--H-----HHHHHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--H-----HHHHHHhhCCceeEeeecccchhhHHHHHH
Confidence 89999999996 4 599999999999999999999863211 1 111233444556665555544445555553
Q ss_pred HHHHhcCCCCcEEEEcC
Q psy7383 250 EFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 250 ~~~l~~MK~gAilINva 266 (501)
+..+.+.+=-++||.+
T Consensus 76 -~~~~~~g~id~lV~na 91 (274)
T d2pd4a1 76 -SVKKDLGSLDFIVHSV 91 (274)
T ss_dssp -HHHHHTSCEEEEEECC
T ss_pred -HHHHHcCCCCeEEeec
Confidence 3334444444555443
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.23 E-value=0.011 Score=51.07 Aligned_cols=88 Identities=22% Similarity=0.124 Sum_probs=58.7
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCC-CEEEEECCCCCc-hhhhhcCceec-----CCH-HHHHh-----cCCEEEEecc
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFG-FNVIFYDPYLPD-GIEKSLGLTRV-----YTL-QDLLF-----QSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG-~~Vi~~dr~~~~-~~~~~~gv~~~-----~sL-delL~-----~sDvVil~lP 239 (501)
.|.+|.|+|. |.+|...++.++.+| .+|++.+++..+ +..+++|.+.+ .++ +++.+ ..|+|+-++.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g 106 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN 106 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence 5789999995 999999999999998 489999977533 44555664322 122 33332 3677777654
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
.+++. +..++.++++..+|.++
T Consensus 107 -~~~~~----~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 107 -SEKTL----SVYPKALAKQGKYVMVG 128 (170)
T ss_dssp -CHHHH----TTGGGGEEEEEEEEECC
T ss_pred -cchHH----HhhhhhcccCCEEEEec
Confidence 22222 23467788888888875
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.029 Score=52.02 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=34.3
Q ss_pred ccccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+|+||++-|.|.+. ||+++|+.|...|++|+.+|++.
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~ 41 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK 41 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 359999999998766 99999999999999999999864
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.14 E-value=0.05 Score=46.66 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=50.9
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhCCCEEEEECCCCC---chh---hhh--cCceecCCHHHHHhcCCEEEEecc
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAFGFNVIFYDPYLP---DGI---EKS--LGLTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~afG~~Vi~~dr~~~---~~~---~~~--~gv~~~~sLdelL~~sDvVil~lP 239 (501)
|.|+||+|||= ++..++++..+..||+++..+.|..- +.. .++ ..+....++++.+..+|+|....-
T Consensus 2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~ 79 (157)
T d1ml4a2 2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI 79 (157)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence 78999999997 68999999999999999999987531 111 111 223445689999999999876543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.13 E-value=0.024 Score=49.91 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=31.9
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|||.|||-|.-|-..|..|+..|++|++++...
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 6999999999999999999999999999999754
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.12 Score=44.40 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=50.7
Q ss_pred CeEEeecc-chHHHHHHHHHHhC----CCEEEEECCCCCch--hhhh-cCceecCCH-HHHHhcCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAF----GFNVIFYDPYLPDG--IEKS-LGLTRVYTL-QDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~af----G~~Vi~~dr~~~~~--~~~~-~gv~~~~sL-delL~~sDvVil~lPlt~~T~~ 246 (501)
|+|||||. |..|+.+.++|... -.++..+..+.... .... ......... .+.+.++|++++++|... .+.
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~-s~~ 80 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDY-TNE 80 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHH-HHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchH-HHH
Confidence 58999987 99999999876532 24666665443221 1111 111111111 245789999999998432 222
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaR 267 (501)
+ ...+..-..+.++|+.+.
T Consensus 81 ~--~~~~~~~g~~~~VID~Ss 99 (146)
T d1t4ba1 81 I--YPKLRESGWQGYWIDAAS 99 (146)
T ss_dssp H--HHHHHHTTCCCEEEECSS
T ss_pred h--hHHHHhcCCCeecccCCc
Confidence 2 233333344567888875
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.76 E-value=0.038 Score=49.45 Aligned_cols=93 Identities=24% Similarity=0.248 Sum_probs=60.4
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCC-chhhhhcCceecC-----CHH----HHHh--cCCEEEEeccC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLP-DGIEKSLGLTRVY-----TLQ----DLLF--QSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~-~~~~~~~gv~~~~-----sLd----elL~--~sDvVil~lPl 240 (501)
.|.+|.|+|.|.||...++.++.+|. +|++.|+... .+..+++|...+. ++. ++.. ..|+++-++-.
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~ 104 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF 104 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECccc
Confidence 58899999999999999999999988 7889998753 2555666654331 222 2222 46888877641
Q ss_pred ch--hhhhc--------ccHHHHhcCCCCcEEEEcC
Q psy7383 241 NE--HNHHL--------INEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 241 t~--~T~~l--------I~~~~l~~MK~gAilINva 266 (501)
.. ..... .-+..+..++++..++-++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 105 EARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp TCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred cccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 10 00000 1145666677777777776
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.75 E-value=0.039 Score=48.26 Aligned_cols=89 Identities=20% Similarity=0.140 Sum_probs=64.2
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC-chhhhhcCceec------CCHHHHH-----hcCCEEEEeccC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP-DGIEKSLGLTRV------YTLQDLL-----FQSDCVSLHCTL 240 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~-~~~~~~~gv~~~------~sLdelL-----~~sDvVil~lPl 240 (501)
.|++|.|.|. |.+|+..++.++..|++|++.+++.+ .+..++.|...+ ...++++ ...|+|+-++.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG- 107 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG- 107 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence 5889999988 67999999999999999999987653 244555664422 1123333 34799888774
Q ss_pred chhhhhcccHHHHhcCCCCcEEEEcCCC
Q psy7383 241 NEHNHHLINEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 241 t~~T~~lI~~~~l~~MK~gAilINvaRG 268 (501)
.++ -.+.++.|+++..+|.++..
T Consensus 108 -~~~----~~~~~~~l~~~G~~v~~G~~ 130 (182)
T d1v3va2 108 -GEF----LNTVLSQMKDFGKIAICGAI 130 (182)
T ss_dssp -HHH----HHHHGGGEEEEEEEEECCCG
T ss_pred -chh----hhhhhhhccCCCeEEeecce
Confidence 222 25778999999999999753
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=93.68 E-value=0.023 Score=49.91 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=56.2
Q ss_pred CeEEeecc-chHHHHHHHHHHhC-CCEEE-EECCCCCchh---------hhhcCceecCCHHHHHhcCCEEEEeccCchh
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAF-GFNVI-FYDPYLPDGI---------EKSLGLTRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~af-G~~Vi-~~dr~~~~~~---------~~~~gv~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
.+|+|+|+ |+||+.+++.+... ++++. ++++...... ....++....++++++..+|+|+=... -+.
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~-p~~ 83 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-PEG 83 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc-HHH
Confidence 47999995 99999999998764 77754 4565432111 112334445678889999999976533 122
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHHHH
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDDSL 276 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL 276 (501)
+...+. . ..+.+.-+|--..| .+++.+
T Consensus 84 ~~~~~~--~--a~~~~~~~ViGTTG--~~~~~~ 110 (162)
T d1diha1 84 TLNHLA--F--CRQHGKGMVIGTTG--FDEAGK 110 (162)
T ss_dssp HHHHHH--H--HHHTTCEEEECCCC--CCHHHH
T ss_pred HHHHHH--H--HHhccceeEEecCC--CcHHHH
Confidence 232221 1 12345556666677 444443
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.57 E-value=0.044 Score=50.36 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=32.6
Q ss_pred cccCCeEEeeccc---hHHHHHHHHHHhCCCEEEEECCC
Q psy7383 172 RIRGDTLGIVGLG---RIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 172 ~L~gktVGIVGlG---~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
+|+||++-|.|.+ .||+++|++|...|++|++.++.
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~ 43 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQA 43 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 5899999999975 59999999999999999988875
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.52 E-value=0.041 Score=45.50 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=30.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+++.|||.|.||-++|..|..+|++|.++++..
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence 789999999999999999999999999998654
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=0.047 Score=52.38 Aligned_cols=33 Identities=24% Similarity=0.115 Sum_probs=28.0
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|+|-|.| .|-||+.+++.|...|++|+++|+..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 5566777 99999999999999999999999853
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=93.43 E-value=0.063 Score=48.89 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=30.4
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+||.|+| .|.||+.+++.|...|++|++.+|...
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 5799998 699999999999999999999998653
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=93.37 E-value=0.066 Score=49.32 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=33.6
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+|+||++-|.|- +.||+++|+.|...|++|++.|++..
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA 40 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 489999999876 56999999999999999999998654
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=93.37 E-value=0.049 Score=47.08 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=47.8
Q ss_pred cCCeEEeecc---chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEe
Q psy7383 174 RGDTLGIVGL---GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 174 ~gktVGIVGl---G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~ 237 (501)
.|.+|++||= +++.++++..+..||++|.+..|..-... ...+....++++.++++|+|...
T Consensus 2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~--~~~~~~~~~~~ea~~~aDviy~~ 66 (151)
T d2at2a2 2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE--ENTFGTYVSMDEAVESSDVVMLL 66 (151)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc--ccceeEEEechhccccCceeeee
Confidence 5889999996 68999999999999999998887531111 12234456899999999998764
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.31 E-value=0.038 Score=47.61 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=42.7
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCC--EEEEECCCCCch----hhhh---------cCcee---cCCHHHHHhcCCEEEE
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGF--NVIFYDPYLPDG----IEKS---------LGLTR---VYTLQDLLFQSDCVSL 236 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~--~Vi~~dr~~~~~----~~~~---------~gv~~---~~sLdelL~~sDvVil 236 (501)
+||+||| .|.+|+.+|..|...+. ++..+|...... .... ...+. ..+-.+.+++||+|++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 4799999 59999999999988774 899999764211 1100 01110 1122357889999999
Q ss_pred ec
Q psy7383 237 HC 238 (501)
Q Consensus 237 ~l 238 (501)
+.
T Consensus 81 tA 82 (145)
T d1hyea1 81 TS 82 (145)
T ss_dssp CC
T ss_pred ec
Confidence 84
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.28 E-value=0.043 Score=44.61 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=30.8
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
++|.|||-|.||-.+|..+..+|.+|.++.+..
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 55 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAG 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEecc
Confidence 789999999999999999999999999998654
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.034 Score=51.66 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=34.0
Q ss_pred ccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+|.||++-|-|- +.||+++|+.|...|++|++.|++.
T Consensus 2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (250)
T d1ydea1 2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE 40 (250)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3589999999975 7899999999999999999999763
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.26 E-value=0.037 Score=51.53 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=34.8
Q ss_pred ccccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 171 ARIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 171 ~~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.+|+||++-|.| .+.||+++|+.|...|++|++.+++..
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~ 53 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST 53 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 459999999998 789999999999999999999887643
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.24 E-value=0.046 Score=44.96 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=31.5
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
-++|.|||-|.||-++|..|+.+|.+|.++.+..
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 4789999999999999999999999999998753
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.22 E-value=0.099 Score=49.76 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=33.1
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+|.||++-|-|.+ .||+++|+.|...|++|++.|+...
T Consensus 4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 4899999888765 5999999999999999999997643
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=93.16 E-value=0.029 Score=47.39 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=25.0
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCCEEEE
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGFNVIF 203 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~~Vi~ 203 (501)
++|+|+|+ |+||+.+++.+...++++.+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~ 29 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVL 29 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEE
Confidence 47999996 99999999999999998764
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.056 Score=54.39 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=59.0
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc--hhhh-------hcC-------------------ceec-
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD--GIEK-------SLG-------------------LTRV- 221 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~--~~~~-------~~g-------------------v~~~- 221 (501)
.|++++|.|||+|.+|..+++.|...|. ++..+|...-+ .+.+ ..| +...
T Consensus 34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 113 (426)
T d1yovb1 34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 113 (426)
T ss_dssp HHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred HHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence 3789999999999999999999998888 68888753210 0000 001 1111
Q ss_pred ----CCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCC
Q psy7383 222 ----YTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMR 257 (501)
Q Consensus 222 ----~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK 257 (501)
+..++++.++|+|+.++ .+-+++..+|+..+...|
T Consensus 114 ~~i~~~~~~~~~~~DlVi~~~-Dn~~aR~~in~~c~~l~k 152 (426)
T d1yovb1 114 NKIQDFNDTFYRQFHIIVCGL-DSIIARRWINGMLISLLN 152 (426)
T ss_dssp SCGGGBCHHHHTTCSEEEECC-SCHHHHHHHHHHHHHTCC
T ss_pred ccccchHHHHHHhcchheecc-CcHHHHHHHHHHHHHhhc
Confidence 11256889999998776 466889999887776554
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=93.02 E-value=0.055 Score=44.13 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=30.9
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
++|.|||-|.+|-++|..|+.+|.+|.++++..
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 689999999999999999999999999998764
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=93.00 E-value=0.42 Score=43.82 Aligned_cols=169 Identities=18% Similarity=0.114 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 129 VAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
+|--+++-+|+.+|.. + ..|++.+|.|+|.|.-|-.+|+.+...+. +++.+|+.
T Consensus 5 TaaV~LAgll~a~~~~---------g----------------~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~ 59 (222)
T d1vl6a1 5 TAVVVSAAFLNALKLT---------E----------------KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 59 (222)
T ss_dssp HHHHHHHHHHHHHHHH---------T----------------CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred HHHHHHHHHHHHHHHh---------C----------------CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence 4556777788877653 1 24889999999999999999999987776 68888876
Q ss_pred C----Cch-h---------hhhcC-ceecCCHHHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccC
Q psy7383 208 L----PDG-I---------EKSLG-LTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVD 272 (501)
Q Consensus 208 ~----~~~-~---------~~~~g-v~~~~sLdelL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVd 272 (501)
- ... . .+... .....++.+++..+|+++..- +.+++.++.+..|.+..++.=.|+..---
T Consensus 60 GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~ 134 (222)
T d1vl6a1 60 GILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEI 134 (222)
T ss_dssp EECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSS
T ss_pred eEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccch
Confidence 1 100 0 00001 112347889999999876643 57899999999999999999999876544
Q ss_pred HHHHHHHHHcCCceEEEEecCCCCCCCCCCCCCCCCCCeEEecCCCC-----CcHHHHHHHHHHHHHHHHHHH
Q psy7383 273 DDSLAAALKQGRIRAAALDVHESEPYNVFQGNLKDAPNILCTPHAAF-----YSEASCTELREMAASEIRRAI 340 (501)
Q Consensus 273 e~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~pL~~~pNVilTPHiAg-----~T~ea~~~~~~~~~~ni~~~l 340 (501)
|.. .+-..|+..-|. ..|..+ -+.-|+++-|=++- .+. -.++|...+++.|.++.
T Consensus 135 e~~--~a~~~G~ai~At-----Gsp~~p-----~Q~NN~yiFPGiglGal~~~ar-itd~m~~aAA~alA~~~ 194 (222)
T d1vl6a1 135 DPE--LAREAGAFIVAT-----GRSDHP-----NQVNNLLAFPGIMKGAVEKRSK-ITKNMLLSAVEAIARSC 194 (222)
T ss_dssp CHH--HHHHTTCSEEEE-----SCTTSS-----SBCCGGGTHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHTS
T ss_pred hhh--hheeccceEEec-----CCCCCC-----ccCcceeecchHHHHHHHhccc-cchHHHHHHHHHHHhcC
Confidence 443 344566654221 333322 14567766664431 111 23456666666666543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.94 E-value=0.053 Score=46.78 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=30.5
Q ss_pred cCCeEEee-ccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIV-GLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIV-GlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.|++|.|. |.|.+|+.+++.++.+|++|++.+++.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~ 63 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA 63 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccch
Confidence 47899999 555599999999999999999998764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=92.93 E-value=0.042 Score=51.19 Aligned_cols=37 Identities=30% Similarity=0.342 Sum_probs=33.3
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++.|.|-+ .||+++|+.|...|++|+..|++.
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD 39 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899999999765 699999999999999999999864
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.062 Score=44.40 Aligned_cols=33 Identities=24% Similarity=0.101 Sum_probs=31.1
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|+|.|||-|.||-.+|..|+.+|.+|.++.+..
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 789999999999999999999999999998763
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=92.73 E-value=0.051 Score=50.68 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=33.8
Q ss_pred ccccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+|+||++-|.| -+.||+++|+.|...|++|++.+++.
T Consensus 3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~ 41 (261)
T d1geea_ 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK 41 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 369999999987 57899999999999999999998864
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.72 E-value=0.16 Score=46.59 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=32.8
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++-|.|- +.||+++|+.|...|++|++.+++.
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN 39 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 488999999986 5699999999999999999999763
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.69 E-value=0.071 Score=43.21 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=33.0
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
..+++|.|||-|.||-.+|..|+.+|.+|..+.+..
T Consensus 20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~ 55 (121)
T d1mo9a2 20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE 55 (121)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence 457999999999999999999999999999998754
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=92.69 E-value=0.057 Score=50.13 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=33.2
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|.||++-|-|-+ .||+++|+.|...|++|++.|++.
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 42 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ 42 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5999999999875 599999999999999999999753
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=92.69 E-value=0.099 Score=48.90 Aligned_cols=80 Identities=13% Similarity=0.129 Sum_probs=56.2
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc--
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN-- 249 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~-- 249 (501)
..+|++|++||+- ...++++..|+++.++++++.. +......-+++|.+||+|++.-. -++|
T Consensus 119 ~~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~------gd~p~~~~~~lLp~aD~viiTGs------TlvN~T 182 (251)
T d2h1qa1 119 EVKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE------GDYPLPASEFILPECDYVYITCA------SVVDKT 182 (251)
T ss_dssp TTTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT------TCEEGGGHHHHGGGCSEEEEETH------HHHHTC
T ss_pred ccCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC------CCCCchHHHHhhhcCCEEEEEec------hhhcCC
Confidence 3579999999874 5667778888999999987643 22222346789999999998632 2333
Q ss_pred -HHHHhcCCCCcEEEEcCC
Q psy7383 250 -EFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 250 -~~~l~~MK~gAilINvaR 267 (501)
...|++.|+...+|=++-
T Consensus 183 l~~LL~~~~~a~~vvl~GP 201 (251)
T d2h1qa1 183 LPRLLELSRNARRITLVGP 201 (251)
T ss_dssp HHHHHHHTTTSSEEEEEST
T ss_pred HHHHHHhCCcCCEEEEECC
Confidence 467777887776665543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.63 E-value=0.34 Score=41.27 Aligned_cols=46 Identities=28% Similarity=0.403 Sum_probs=37.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCCCCc-hhhhhcCce
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYLPD-GIEKSLGLT 219 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~~~-~~~~~~gv~ 219 (501)
.|.+|.|+|.|.+|...+..++.+|. +|++.|+...+ +..+++|..
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd 75 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT 75 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc
Confidence 57899999999999999999988877 68889887643 455666654
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.59 E-value=0.056 Score=46.79 Aligned_cols=64 Identities=13% Similarity=-0.005 Sum_probs=41.4
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCE--EEEECCCCCchhhhhcCce-------ecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFN--VIFYDPYLPDGIEKSLGLT-------RVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~--Vi~~dr~~~~~~~~~~gv~-------~~~sLdelL~~sDvVil~lP 239 (501)
+||.|.| .|.||+.+++.|...|.+ |+...|+.........+++ ...++.++++.+|.|+.+..
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~ 77 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS 77 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence 5899998 799999999999988865 5555554322111111211 11234567889999887654
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.51 E-value=0.051 Score=44.88 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=31.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
-+++.|||.|.||-++|..+..+|++|.++.+..
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~ 58 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS 58 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence 4789999999999999999999999999998754
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.45 E-value=0.059 Score=49.80 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=33.1
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.|+||++-|-|- +.||+++|+.|...|++|++.|++.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~ 40 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD 40 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 489999999976 6699999999999999999999864
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=92.44 E-value=0.12 Score=48.20 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=34.8
Q ss_pred ccccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 171 ARIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 171 ~~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+|+||++.|-| .+.||+++|+.|...|++|++.|++.
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~ 59 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM 59 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 479999999997 78999999999999999999999864
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=92.42 E-value=0.098 Score=45.94 Aligned_cols=104 Identities=12% Similarity=0.096 Sum_probs=61.3
Q ss_pred CCeEEeeccchHHHH--HHHHHHhC----CCEEEEECCCCCchh--h-------hh----cCceecCCHHHHHhcCCEEE
Q psy7383 175 GDTLGIVGLGRIGSA--VALRAKAF----GFNVIFYDPYLPDGI--E-------KS----LGLTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 175 gktVGIVGlG~IG~~--iA~~L~af----G~~Vi~~dr~~~~~~--~-------~~----~gv~~~~sLdelL~~sDvVi 235 (501)
..+|.|||.|..|.. +...++.. +-+|..+|....... . .. ..+....+.+|.+++||+|+
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 357999999998754 33444322 248999997643210 0 01 11233457889999999999
Q ss_pred EeccCchh---hh----------------------------hcc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q psy7383 236 LHCTLNEH---NH----------------------------HLI--NEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278 (501)
Q Consensus 236 l~lPlt~~---T~----------------------------~lI--~~~~l~~MK~gAilINvaRG~vVde~aL~~ 278 (501)
++.-.... ++ .++ -.+.+.+..|+++|||++-.-=+-..++.+
T Consensus 83 itag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~~k 158 (167)
T d1u8xx1 83 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRR 158 (167)
T ss_dssp ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHH
T ss_pred ECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHHH
Confidence 99753110 00 011 023445567999999998763333444444
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=92.41 E-value=0.081 Score=48.64 Aligned_cols=37 Identities=27% Similarity=0.196 Sum_probs=32.5
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++-|-| -+.||+++|++|...|++|+.++++.
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~ 38 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE 38 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 37899999987 56699999999999999999999763
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=92.38 E-value=0.15 Score=44.75 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=59.0
Q ss_pred cCCeEEee--ccchHHHHHHHHHHhCCCEEEEECCCCCc-h----hhhhcCceecCCH------------HHHH----hc
Q psy7383 174 RGDTLGIV--GLGRIGSAVALRAKAFGFNVIFYDPYLPD-G----IEKSLGLTRVYTL------------QDLL----FQ 230 (501)
Q Consensus 174 ~gktVGIV--GlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~----~~~~~gv~~~~sL------------delL----~~ 230 (501)
.|.+|.|+ |.|.+|+...+.++.+|++|++.-++... + ..+++|...+-+. .++. ..
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~ 107 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE 107 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence 47788888 78999999999999999999987655432 1 2345565433111 1111 23
Q ss_pred CCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 231 SDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 231 sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.|+|+-++- .++ ....++.|+++..+|.++.
T Consensus 108 vdvv~D~vg--~~~----~~~~~~~l~~~G~~v~~G~ 138 (189)
T d1gu7a2 108 AKLALNCVG--GKS----STGIARKLNNNGLMLTYGG 138 (189)
T ss_dssp EEEEEESSC--HHH----HHHHHHTSCTTCEEEECCC
T ss_pred ceEEEECCC--cch----hhhhhhhhcCCcEEEEECC
Confidence 688877653 111 1567889999999999864
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=92.37 E-value=0.065 Score=50.80 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=46.7
Q ss_pred CCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchh----hhhcCceec----C----CHHHHHhcCCEEEEeccC
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGI----EKSLGLTRV----Y----TLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~----~~~~gv~~~----~----sLdelL~~sDvVil~lPl 240 (501)
.|||.|+| .|.||+.+++.|.+.|++|++..|...... ....+++.+ . .++.++..+|++++..+.
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~ 81 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 81 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence 58999998 699999999999999999999988654321 111233321 1 144567788888877654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=92.33 E-value=0.063 Score=49.29 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=33.0
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.|.||++-|.|-+. ||+++|+.|...|++|++.+|+.
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE 39 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 38999999997765 99999999999999999998764
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=92.29 E-value=0.071 Score=43.71 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=30.8
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
-+++.|||-|.||-.+|..++.+|++|.++.+..
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence 3789999999999999999999999999987553
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=92.29 E-value=0.092 Score=47.79 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=32.5
Q ss_pred ccCCeEEeeccc---hHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGLG---RIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGlG---~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|+||++-|.|.+ .||+++|+.|...|++|+..+++.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~ 41 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 41 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence 899999999876 499999999999999999998763
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=92.27 E-value=0.14 Score=47.14 Aligned_cols=85 Identities=20% Similarity=0.186 Sum_probs=53.0
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEeccCch--hhhh
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCTLNE--HNHH 246 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lPlt~--~T~~ 246 (501)
+|+||++-|.|-+. ||+++|+.|...|++|++.+++...... ..+++.+ ..+++.+.+=+++ +.+.
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~---------~~~~~~~~~g~~~~~~~~Dv~~~~~v~~ 76 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVE---------VTEKVGKEFGVKTKAYQCDVSNTDIVTK 76 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHH---------HHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH---------HHHHHHHHhCCceEEEEccCCCHHHHHH
Confidence 58999999997654 9999999999999999999987543211 0122221 2455555554433 3344
Q ss_pred cccHHHHhcCCCCcEEEEcC
Q psy7383 247 LINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINva 266 (501)
+++ +..+...+=-+|||.+
T Consensus 77 ~~~-~~~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 77 TIQ-QIDADLGPISGLIANA 95 (260)
T ss_dssp HHH-HHHHHSCSEEEEEECC
T ss_pred HHH-HHHHHhCCCcEecccc
Confidence 443 3334444444667765
|
| >d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=92.25 E-value=0.24 Score=44.47 Aligned_cols=104 Identities=14% Similarity=0.049 Sum_probs=73.0
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCC-----CCchhhhhcCceecCCHHHHHhcCCEEEEeccCchhhhhccc
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY-----LPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLIN 249 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~-----~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt~~T~~lI~ 249 (501)
.+||++. =..+++|...|++|++=.-. ...+.-...|++.+.+.+++. ++|+|+..-+.++
T Consensus 13 E~RValt------P~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~------- 78 (193)
T d1pjca2 13 EFRVGLS------PSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLP------- 78 (193)
T ss_dssp CCCCSCC------HHHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCG-------
T ss_pred CcEeccC------HHHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCCH-------
Confidence 4556554 35678889999999986422 122333445777676766766 6898876554333
Q ss_pred HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCC
Q psy7383 250 EFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHES 295 (501)
Q Consensus 250 ~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~ 295 (501)
+.+++||+|+++|-.-.. ....++++.|.+.+|...++|....
T Consensus 79 -~e~~~lk~~~~li~~l~p--~~~~ell~~l~~~~it~~s~E~ipr 121 (193)
T d1pjca2 79 -AEYDLMQKDQLLFTYLHL--AAARELTEQLMRVGLTAIAYETVEL 121 (193)
T ss_dssp -GGGGGCCTTCEEEECCCG--GGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred -HHHHhhhcCceEEEecCc--ccchHHHHHHHHcCCEEEEeeeccc
Confidence 457889999999987653 5567899999999999877776543
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.25 E-value=0.05 Score=44.99 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=29.7
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
+++.|||-|.||-++|..|+.+|.+|..+.+.
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 68999999999999999999999999998754
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=92.16 E-value=0.13 Score=44.99 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=58.1
Q ss_pred CeEEeec-cchHHHHHHHHHHhC-CCEEEEECC---CCC--chhhhh----cC-----ceecCCHHHHHhcCCEEEEecc
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAF-GFNVIFYDP---YLP--DGIEKS----LG-----LTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~af-G~~Vi~~dr---~~~--~~~~~~----~g-----v~~~~sLdelL~~sDvVil~lP 239 (501)
.+|+||| .|-.|+++.++|... .++|..... ... +..... .+ .....+.++...++|++++++|
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp 81 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA 81 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence 3799999 899999999999987 667655421 111 111100 01 1122344556778999999998
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHH
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~ 277 (501)
.....+ ..-...+.+..+||.+.--=.+....+
T Consensus 82 ~~~s~~-----~~~~~~~~~~~vIDlSadfRl~~~~~~ 114 (179)
T d2g17a1 82 HEVSHD-----LAPQFLQAGCVVFDLSGAFRVNDRAFY 114 (179)
T ss_dssp HHHHHH-----HHHHHHHTTCEEEECSSTTSSSCHHHH
T ss_pred chhHHH-----HhhhhhhcCceeecccccccccccccc
Confidence 432211 122334578999999865545444433
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=92.13 E-value=0.049 Score=50.56 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=33.0
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++.|.|- +.||+++|+.|...|++|++.|++.
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR 39 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 589999999976 5599999999999999999999753
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.11 E-value=0.068 Score=44.58 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=31.2
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCC--CEEEEECCCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~ 208 (501)
+||||.|||-|.+|-.+|..|+.++ .+|+++++..
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 4899999999999999999998877 5899998764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=92.06 E-value=0.12 Score=47.79 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=32.6
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++-|-|-+ .||+++|+.|...|++|++.|++.
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 38 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS 38 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3789999998765 699999999999999999999864
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.08 Score=49.10 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=33.4
Q ss_pred cccCCeEEeeccch-HHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGLGR-IGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGlG~-IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.|+||++-|.|.+. ||+++|+.|...|++|+..+|+.
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~ 48 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK 48 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 39999999998765 99999999999999999999864
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.05 E-value=0.14 Score=47.24 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=33.0
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++-|.|- +.||+++|+.|...|++|++.+++.
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL 39 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 589999999976 4599999999999999999999764
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=91.99 E-value=0.13 Score=46.16 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=31.3
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
-|||.|+|. |.||+.+++.|...|++|++++|...
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~ 38 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST 38 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence 478999985 99999999999999999999998753
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.24 Score=45.64 Aligned_cols=88 Identities=22% Similarity=0.222 Sum_probs=55.2
Q ss_pred cccccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHh---cCCEEEEeccCc--hh
Q psy7383 170 CARIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLF---QSDCVSLHCTLN--EH 243 (501)
Q Consensus 170 ~~~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~---~sDvVil~lPlt--~~ 243 (501)
+.+|+||++-|.|. +.||+++|+.|...|++|++++++... .. + ..+++-. ...++.+.|=++ ++
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~-l~-~-------~~~~l~~~~~~~~~~~~~~Dls~~~~ 75 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGN-IE-E-------LAAECKSAGYPGTLIPYRCDLSNEED 75 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH-HH-H-------HHHHHHHTTCSSEEEEEECCTTCHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH-HH-H-------HHHHHHhcCCCceEEEEEccCCCHHH
Confidence 45699999999965 679999999999999999999976321 10 0 0122221 245666666543 34
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.+.+++ +..+....=-+|||.+-
T Consensus 76 v~~~v~-~~~~~~g~iD~lVnnAg 98 (257)
T d1xg5a_ 76 ILSMFS-AIRSQHSGVDICINNAG 98 (257)
T ss_dssp HHHHHH-HHHHHHCCCSEEEECCC
T ss_pred HHHHHH-HHHHhcCCCCEEEeccc
Confidence 555554 33344443346777764
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.98 E-value=0.094 Score=44.75 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=51.2
Q ss_pred CeEEeecc-chHHHHHHHHHHhC---CCEEEEECCCCCchhhhhcCce--ecCC-HHHHHhcCCEEEEeccCchhhhhcc
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAF---GFNVIFYDPYLPDGIEKSLGLT--RVYT-LQDLLFQSDCVSLHCTLNEHNHHLI 248 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~af---G~~Vi~~dr~~~~~~~~~~gv~--~~~s-LdelL~~sDvVil~lPlt~~T~~lI 248 (501)
.+|||||. |-.|+++.+.|... ..++..+..+...+..-..... .+.+ .++.+.++|++++++|... +..+.
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~~ 81 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAHA 81 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcch-hhhhc
Confidence 57999986 99999999999643 3456555332222111111111 1112 2345789999999998432 22221
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q psy7383 249 NEFTIKQMRPGAFLVNTARG 268 (501)
Q Consensus 249 ~~~~l~~MK~gAilINvaRG 268 (501)
. ...+.|.++||.+.-
T Consensus 82 -~---~~~~~g~~VID~Ss~ 97 (144)
T d2hjsa1 82 -E---RARAAGCSVIDLSGA 97 (144)
T ss_dssp -H---HHHHTTCEEEETTCT
T ss_pred -c---ccccCCceEEeechh
Confidence 1 223578999988753
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=91.95 E-value=0.092 Score=49.36 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=33.5
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.+||+|.|.| .|-||+.+++.|...|++|+++|+...
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~ 43 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP 43 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 4689999998 889999999999999999999998753
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=91.89 E-value=0.36 Score=41.37 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=50.1
Q ss_pred CeEEeec-cchHHHHHHHHHHhC----CCEEEEECCCCCchhhhhcC----ceecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAF----GFNVIFYDPYLPDGIEKSLG----LTRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~af----G~~Vi~~dr~~~~~~~~~~g----v~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
++||||| .|-.|+++.++|... ..++..+..+...+...... ......-.+.+.++|+|++|+|... +..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~-s~~ 79 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSY-TEK 79 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHH-HHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchH-HHH
Confidence 4799996 699999999987642 25666554332211111111 1111112355799999999999432 222
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q psy7383 247 LINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaR 267 (501)
+. ..+..-..++++|+.|.
T Consensus 80 ~~--~~l~~~g~~~~VIDlSs 98 (147)
T d1mb4a1 80 VY--PALRQAGWKGYWIDAAS 98 (147)
T ss_dssp HH--HHHHHTTCCSEEEESSS
T ss_pred Hh--HHHHHcCCceEEEeCCc
Confidence 22 22233344567888764
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.82 E-value=0.069 Score=49.62 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=33.1
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.|+||++-|.|-+ .||+++|+.|...|++|+.++++.
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~ 42 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE 42 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899999999765 499999999999999999999864
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=91.77 E-value=0.23 Score=45.78 Aligned_cols=87 Identities=10% Similarity=0.099 Sum_probs=52.1
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHhcCCEEEEeccCc-h--hhhhc
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLFQSDCVSLHCTLN-E--HNHHL 247 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~~sDvVil~lPlt-~--~T~~l 247 (501)
+|+||+|-|.|-. .||+++|+.|...|++|++.+++...... ...+........+.+..+-++ + +.+.+
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 74 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTA-------LAELKAINPKVNITFHTYDVTVPVAESKKL 74 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHH-------HHHHHHHCTTSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHH-------HHHHHhhCCCCCEEEEEeecCCCHHHHHHH
Confidence 4899999999876 59999999999999998877665432211 111223334445555555544 2 34455
Q ss_pred ccHHHHhcCCCCcEEEEcC
Q psy7383 248 INEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 248 I~~~~l~~MK~gAilINva 266 (501)
+++ ..+...+=-+|||.+
T Consensus 75 ~~~-~~~~~g~iDilvnnA 92 (254)
T d1sbya1 75 LKK-IFDQLKTVDILINGA 92 (254)
T ss_dssp HHH-HHHHHSCCCEEEECC
T ss_pred HHH-HHHHcCCCCEEEeCC
Confidence 543 223333222666665
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.1 Score=47.82 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=32.8
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.|+||++-|.|- +.||+++|++|...|++|++.||+.
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~ 41 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ 41 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 489999999865 5699999999999999999999863
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=91.59 E-value=0.19 Score=45.96 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=32.5
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|+||++-|-|- +.||+++|+.|...|++|+..|++.
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE 39 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 78999999985 5699999999999999999999864
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=91.51 E-value=0.11 Score=42.79 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=32.5
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
-.+++|.|||-|.+|-.+|..|+.+|.+|.++++..
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence 357899999999999999999999999999997653
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=91.37 E-value=0.12 Score=47.21 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=43.2
Q ss_pred cCCeEEeeccchHH----HHHHHHHHhC--CCEEE-EECCCCCc--hhhhhcCc---eecCCHHHHHh--cCCEEEEecc
Q psy7383 174 RGDTLGIVGLGRIG----SAVALRAKAF--GFNVI-FYDPYLPD--GIEKSLGL---TRVYTLQDLLF--QSDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVGlG~IG----~~iA~~L~af--G~~Vi-~~dr~~~~--~~~~~~gv---~~~~sLdelL~--~sDvVil~lP 239 (501)
+-.+|||||+|.+| +.-...++.. +++|. ++|+.... ...+..+. ..+.++++++. +-|+|++++|
T Consensus 15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp 94 (237)
T d2nvwa1 15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 94 (237)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence 34589999999854 4444455554 57876 57876532 22334433 34568999986 4678888888
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.32 E-value=0.067 Score=46.05 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=52.9
Q ss_pred CCeEEeecc-chHHHHHHHHHHhCCC---EEEEECCCCCchhhhh---cCceecCCHHHHHhcCCEEEEeccCchhhhhc
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKAFGF---NVIFYDPYLPDGIEKS---LGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHL 247 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~afG~---~Vi~~dr~~~~~~~~~---~gv~~~~sLdelL~~sDvVil~lPlt~~T~~l 247 (501)
|-+|||||. |-.|+++.++|....+ ++..+..+...+.... .........++...+.|++++++|... +..+
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~-s~~~ 79 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST-SAKY 79 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHH-HHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccc-hhhH
Confidence 457999997 9999999999977643 4444432211111000 011111234566788999999988332 2222
Q ss_pred ccHHHHhcCCCCcEEEEcCC
Q psy7383 248 INEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 248 I~~~~l~~MK~gAilINvaR 267 (501)
..+..+.+..+|+.|.
T Consensus 80 ----~~~~~~~~~~VIDlSs 95 (154)
T d2gz1a1 80 ----APYAVKAGVVVVDNTS 95 (154)
T ss_dssp ----HHHHHHTTCEEEECSS
T ss_pred ----HhhhccccceehhcCh
Confidence 2234467999999875
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=91.32 E-value=0.11 Score=42.76 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=32.1
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+++|.|||-|.+|-++|..|+..|.+|..+++..
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 63 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cCCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence 36899999999999999999999999999998754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=91.29 E-value=0.08 Score=48.96 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=32.9
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++-|.|- +.||+++|+.|...|++|+..|++.
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~ 40 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE 40 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 489999999985 5699999999999999999999753
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=91.21 E-value=0.072 Score=46.56 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=60.6
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHHHH---------hcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQDLL---------FQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLdelL---------~~sDvVil~lPlt 241 (501)
..+.+|.|-| .|.+|....+.++.+|++|++..++.++ +..+++|.+.+.+-++.. ...|+|+-++-
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg-- 99 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG-- 99 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC--
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc--
Confidence 3566788888 6999999999999999999998887543 555666665443333321 23566655542
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+-.-.+.++.|+++..+|.++.
T Consensus 100 ----g~~~~~~~~~l~~~G~iv~~G~ 121 (167)
T d1tt7a2 100 ----GKQLASLLSKIQYGGSVAVSGL 121 (167)
T ss_dssp ----THHHHHHHTTEEEEEEEEECCC
T ss_pred ----HHHHHHHHHHhccCceEEEeec
Confidence 1122567778888888888764
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.19 E-value=0.083 Score=46.62 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=59.2
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecC----CHHHHH-----hcCCEEEEeccCc
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVY----TLQDLL-----FQSDCVSLHCTLN 241 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~----sLdelL-----~~sDvVil~lPlt 241 (501)
..|.+|.|.| -|.+|....+.++.+|++|++..++..+ +..+..|.+.+. ..++.. ...|+|+-++-
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg-- 107 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG-- 107 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST--
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC--
Confidence 4588999998 6999999999999999999998876543 455556654321 112221 13566665543
Q ss_pred hhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 242 EHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 242 ~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
+-.-.+.++.|+++..+|.++-
T Consensus 108 ----g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 108 ----GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp ----TTTHHHHHHTEEEEEEEEECSC
T ss_pred ----chhHHHHHHHhCCCceEEEeec
Confidence 1223567788888888888764
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=91.12 E-value=0.096 Score=43.52 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=31.4
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+++.|||-|.||-++|..++.+|.+|..+.+..
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 4789999999999999999999999999998754
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=91.12 E-value=0.11 Score=45.71 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=31.8
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
..|+|.|||-|-+|-..|..|+..|++|+++++..
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34689999999999999999999999999999753
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=91.11 E-value=0.093 Score=46.83 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=32.1
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
..+||.|||.|..|..+|..|+..|.+|+++++..
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45789999999999999999999999999999754
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=91.04 E-value=0.085 Score=47.57 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=32.1
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.-|+|.|||-|..|-..|..|+..|++|++++...
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45799999999999999999999999999999754
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.02 E-value=0.18 Score=46.07 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=34.1
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.|.||++-|.|-+ .||+++|+.|...|++|++.+|...
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~ 42 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG 42 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 4899999999876 5999999999999999999998754
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.93 E-value=0.2 Score=47.37 Aligned_cols=65 Identities=22% Similarity=0.109 Sum_probs=44.5
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchhhhh-cC--cee--cC---CHHHHHhcCCEEEEec
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS-LG--LTR--VY---TLQDLLFQSDCVSLHC 238 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~-~g--v~~--~~---sLdelL~~sDvVil~l 238 (501)
.+++|.|.| .|-||+.+++.|...|.+|+++|+......... .. +.. .. .+.+++..+|.|+-+.
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 87 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 87 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence 688999986 999999999999999999999987643321111 11 111 11 2334567899876554
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=90.91 E-value=0.11 Score=45.93 Aligned_cols=38 Identities=32% Similarity=0.494 Sum_probs=34.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
....|+|.|||-|..|...|..|+..|++|++|++...
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 46789999999999999999999999999999997654
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=90.88 E-value=0.19 Score=43.13 Aligned_cols=94 Identities=12% Similarity=0.220 Sum_probs=60.5
Q ss_pred ccCCeEEeecc---chHHHHHHHHHHhCC-CEEEEECCCC---Cch---hhhhcC--ceecCCHHHHHhcCCEEEEeccC
Q psy7383 173 IRGDTLGIVGL---GRIGSAVALRAKAFG-FNVIFYDPYL---PDG---IEKSLG--LTRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 173 L~gktVGIVGl---G~IG~~iA~~L~afG-~~Vi~~dr~~---~~~---~~~~~g--v~~~~sLdelL~~sDvVil~lPl 240 (501)
|.|.+|++||= +++..+++..+..|| ..+.+..+.. .+. ..+..+ +....++++++.++|+|....--
T Consensus 2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~ 81 (160)
T d1ekxa2 2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ 81 (160)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence 78999999995 779999999999996 5556665532 111 112222 33456889999999999764322
Q ss_pred chh----------hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 241 NEH----------NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 241 t~~----------T~~lI~~~~l~~MK~gAilINva 266 (501)
... ....++++.++.++++++|.-+.
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL 117 (160)
T d1ekxa2 82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 117 (160)
T ss_dssp GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence 110 11223566667777777776654
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=90.83 E-value=0.048 Score=49.96 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=33.3
Q ss_pred ccccCCeEEeeccchHHHHHHHHHHhCCC-EEEEECCC
Q psy7383 171 ARIRGDTLGIVGLGRIGSAVALRAKAFGF-NVIFYDPY 207 (501)
Q Consensus 171 ~~L~gktVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~ 207 (501)
..|++++|.|||+|.+|..+|..|...|. ++..+|..
T Consensus 26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 45999999999999999999999999998 68888854
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.78 E-value=0.11 Score=46.95 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=41.6
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHHHh--cCCEEEEecc
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDLLF--QSDCVSLHCT 239 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdelL~--~sDvVil~lP 239 (501)
++|.|.|- |-||+.+++.|...|++|++.|++..+ +....++++++. +.|+|+-+.-
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D-------~~d~~~~~~~l~~~~~d~vih~a~ 61 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD-------ITNVLAVNKFFNEKKPNVVINCAA 61 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC-------TTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhcc-------CCCHHHHHHHHHHcCCCEEEeecc
Confidence 57899996 999999999999999999999986321 111224566666 4588765543
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.78 E-value=0.11 Score=44.50 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=43.2
Q ss_pred CeEEeec-cchHHHHHHHHHHhCC-------CEEEEECCCCCchhhhh-------c------CceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFG-------FNVIFYDPYLPDGIEKS-------L------GLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG-------~~Vi~~dr~~~~~~~~~-------~------gv~~~~sLdelL~~sDvV 234 (501)
.+|.||| .|.+|+.+|-.|...+ ..+..+|.....+.... . .+....+..+.+++||+|
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV 83 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA 83 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence 3899999 5999999999986433 25677886543221111 0 122234678899999999
Q ss_pred EEecc
Q psy7383 235 SLHCT 239 (501)
Q Consensus 235 il~lP 239 (501)
+++.-
T Consensus 84 Vitag 88 (154)
T d5mdha1 84 ILVGS 88 (154)
T ss_dssp EECCS
T ss_pred EEecc
Confidence 99864
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=90.74 E-value=0.11 Score=48.47 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=32.8
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|+||++.|-|- +.||+++|+.|...|++|++.||+.
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA 39 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 88999999975 7899999999999999999999863
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.67 E-value=0.08 Score=48.96 Aligned_cols=36 Identities=33% Similarity=0.254 Sum_probs=32.7
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|+||++-|.|- +.||+++|+.|...|++|++.|++.
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINL 39 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 88999999976 7899999999999999999999763
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.54 E-value=0.12 Score=41.80 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=31.2
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+++.|||-|.+|-++|..|+.+|++|.++++..
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence 3799999999999999999999999999998653
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=90.53 E-value=0.41 Score=43.19 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=32.7
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|+||++-|.|- +.||+++|+.|...|++|++.||+.
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~ 38 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE 38 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 78999999986 6699999999999999999999863
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=90.52 E-value=0.28 Score=45.00 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=33.6
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
|+||++-|-| -+.||+++|+.|...|++|++.|++.+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~ 40 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE 40 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 8999999997 778999999999999999999998753
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=90.48 E-value=0.21 Score=45.87 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=33.1
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++-|.| .+.||+++|+.|...|++|++.+++.
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 40 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS 40 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 48999999997 56699999999999999999999863
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=90.40 E-value=0.11 Score=47.43 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=32.4
Q ss_pred ccCCeEEeecc-ch--HHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGL-GR--IGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGl-G~--IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|+||++.|.|. |. ||+++|+.|...|++|+..++..
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~ 42 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 42 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence 89999999996 54 99999999999999999988754
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=0.5 Score=44.46 Aligned_cols=89 Identities=21% Similarity=0.283 Sum_probs=54.5
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCHHHH---HhcCCEEEEeccCch--hhh
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTLQDL---LFQSDCVSLHCTLNE--HNH 245 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sLdel---L~~sDvVil~lPlt~--~T~ 245 (501)
.|+||++.|.|- +.||+++|+.|...|++|++.+++....... ...+.+- .....++.+.+=+++ +.+
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~------~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~ 82 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSA------ADELQANLPPTKQARVIPIQCNIRNEEEVN 82 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH------HHHHHHTSCTTCCCCEEEEECCTTCHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH------HHHHHhhhccccCceEEEEeccCCCHHHHH
Confidence 499999999975 5599999999999999999999864321100 0011111 123456666654433 344
Q ss_pred hcccHHHHhcCCCCcEEEEcCC
Q psy7383 246 HLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 246 ~lI~~~~l~~MK~gAilINvaR 267 (501)
.+++ +..+.+.+=-+|||.+-
T Consensus 83 ~~~~-~~~~~~G~iDiLVnnAg 103 (297)
T d1yxma1 83 NLVK-STLDTFGKINFLVNNGG 103 (297)
T ss_dssp HHHH-HHHHHHSCCCEEEECCC
T ss_pred HHHH-HHHHHhCCeEEEEeecc
Confidence 5553 34444444456777653
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=90.36 E-value=0.09 Score=46.34 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=55.4
Q ss_pred cCCeEEee-ccchHHHHHHHHHHhCCCEEEEECCCCCc-hhhhhcCceecCCHHH------HH-hcCCEEEEeccCchhh
Q psy7383 174 RGDTLGIV-GLGRIGSAVALRAKAFGFNVIFYDPYLPD-GIEKSLGLTRVYTLQD------LL-FQSDCVSLHCTLNEHN 244 (501)
Q Consensus 174 ~gktVGIV-GlG~IG~~iA~~L~afG~~Vi~~dr~~~~-~~~~~~gv~~~~sLde------lL-~~sDvVil~lPlt~~T 244 (501)
.+.+|.|. |.|.+|+...+.++.+|++|++..++..+ +..+++|...+.+-++ +. ...|.++-++- .+
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg--g~- 107 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG--DK- 107 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC--HH-
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcc--hH-
Confidence 34466666 56999999999999999999998876543 3445566543322111 11 11355554432 11
Q ss_pred hhcccHHHHhcCCCCcEEEEcCC
Q psy7383 245 HHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 245 ~~lI~~~~l~~MK~gAilINvaR 267 (501)
.-.+.++.|+++..+|+++.
T Consensus 108 ---~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 108 ---VLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp ---HHHHHHHTEEEEEEEEECCC
T ss_pred ---HHHHHHHHhccccceEeecc
Confidence 13567777888888888765
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=90.36 E-value=0.15 Score=41.77 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=31.2
Q ss_pred CCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
++++.|||-|.+|-++|..|+.+|.+|.++++..
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence 4789999999999999999999999999998754
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=90.27 E-value=0.57 Score=41.17 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=58.0
Q ss_pred eEEeec-cchHHHHHHHHHHhC-CCEEEEECCCCC--chhhh---h-cCc--eecCCHHHHHhcCCEEEEeccCchhhhh
Q psy7383 177 TLGIVG-LGRIGSAVALRAKAF-GFNVIFYDPYLP--DGIEK---S-LGL--TRVYTLQDLLFQSDCVSLHCTLNEHNHH 246 (501)
Q Consensus 177 tVGIVG-lG~IG~~iA~~L~af-G~~Vi~~dr~~~--~~~~~---~-~gv--~~~~sLdelL~~sDvVil~lPlt~~T~~ 246 (501)
+||||| .|-.|+.+.++|..+ ..++...-.+.. ..... . .+. ....+.+++..++|+|++++|.... .
T Consensus 3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s-~- 80 (176)
T d1vkna1 3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-Y- 80 (176)
T ss_dssp EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-H-
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH-H-
Confidence 799997 599999999999875 346655532221 11110 0 111 1123667888899999999996532 2
Q ss_pred cccHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q psy7383 247 LINEFTIKQMRPGAFLVNTARGGLVDDDSLAA 278 (501)
Q Consensus 247 lI~~~~l~~MK~gAilINvaRG~vVde~aL~~ 278 (501)
+..... .+..+||.|---=.+....++
T Consensus 81 ----~~~~~~-~~~~VIDlSadfRl~~~~~y~ 107 (176)
T d1vkna1 81 ----DLVREL-KGVKIIDLGADFRFDDPGVYR 107 (176)
T ss_dssp ----HHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred ----HHHHhh-ccceEEecCccccccchhhHH
Confidence 222333 578999998644344444443
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.26 E-value=0.087 Score=46.27 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=59.3
Q ss_pred cCCeEEeec-cchHHHHHHHHHHhCCCE-EEEECCCCCc--hhhhhcCceec-----CCHHHHHhc-----CCEEEEecc
Q psy7383 174 RGDTLGIVG-LGRIGSAVALRAKAFGFN-VIFYDPYLPD--GIEKSLGLTRV-----YTLQDLLFQ-----SDCVSLHCT 239 (501)
Q Consensus 174 ~gktVGIVG-lG~IG~~iA~~L~afG~~-Vi~~dr~~~~--~~~~~~gv~~~-----~sLdelL~~-----sDvVil~lP 239 (501)
.+++|.|.| .|.+|+..++.++.+|++ |++.+.+.+. ...++.|...+ .++.+.+++ .|+|+-++-
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG 109 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG 109 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence 347899999 599999999999999986 5545544322 22334554332 245555554 899987764
Q ss_pred CchhhhhcccHHHHhcCCCCcEEEEcCC
Q psy7383 240 LNEHNHHLINEFTIKQMRPGAFLVNTAR 267 (501)
Q Consensus 240 lt~~T~~lI~~~~l~~MK~gAilINvaR 267 (501)
.+ .-...++.++++..+|.++.
T Consensus 110 --g~----~~~~~~~~l~~~G~iv~~G~ 131 (187)
T d1vj1a2 110 --GD----ISNTVISQMNENSHIILCGQ 131 (187)
T ss_dssp --HH----HHHHHHTTEEEEEEEEEC--
T ss_pred --ch----hHHHHhhhccccccEEEecc
Confidence 12 12567889999999999874
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=90.17 E-value=0.24 Score=45.73 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=32.9
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++.|.| -+.||+++|+.|...|++|++.|++.
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD 40 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 48999999997 45699999999999999999999864
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=90.15 E-value=0.32 Score=44.58 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=31.7
Q ss_pred ccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|+||++-|.|-+ .||+++|+.|...|++|++.+++.
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~ 38 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD 38 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 689988888665 499999999999999999999864
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.12 E-value=0.1 Score=48.22 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=32.9
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++-|-|- +.||+++|++|...|++|++.+++.
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 45 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA 45 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 489999999976 5699999999999999999999753
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=90.04 E-value=0.62 Score=40.62 Aligned_cols=95 Identities=12% Similarity=0.123 Sum_probs=65.1
Q ss_pred cccCCeEEeeccc--hHHHHHHHHHHhCCCEEEEECCCC---Cchh-------hhhcC--ceecCCHHHHHhcCCEEEEe
Q psy7383 172 RIRGDTLGIVGLG--RIGSAVALRAKAFGFNVIFYDPYL---PDGI-------EKSLG--LTRVYTLQDLLFQSDCVSLH 237 (501)
Q Consensus 172 ~L~gktVGIVGlG--~IG~~iA~~L~afG~~Vi~~dr~~---~~~~-------~~~~g--v~~~~sLdelL~~sDvVil~ 237 (501)
.+.+.+|++||=| ++..+++..+..||++|.++.|.. .... ....| +....++++.+.++|+|..-
T Consensus 2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 81 (183)
T d1duvg2 2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD 81 (183)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence 4788999999955 799999999999999999998752 1111 11122 33456899999999999764
Q ss_pred ccCc----h---h-------hhhcccHHHHhcCCCCcEEEEcC
Q psy7383 238 CTLN----E---H-------NHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 238 lPlt----~---~-------T~~lI~~~~l~~MK~gAilINva 266 (501)
.=.. . . ....++...+...+++++|.-+.
T Consensus 82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L 124 (183)
T d1duvg2 82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL 124 (183)
T ss_dssp CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence 4311 0 0 11233455556678888888875
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=89.86 E-value=0.2 Score=41.70 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=32.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+++|.|||-|.+|-++|..|+..|.+|.++++..
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 68 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence 46899999999999999999999999999998754
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.77 E-value=0.21 Score=46.33 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=32.9
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++-|.|- +.||+++|+.|...|++|++.+++.
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~ 39 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS 39 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 489999999875 6699999999999999999999864
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=89.60 E-value=0.14 Score=47.08 Aligned_cols=37 Identities=16% Similarity=0.002 Sum_probs=32.8
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.|.||++-|.|- +.||+++|+.|...|++|++++++.
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~ 44 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ 44 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 488999999876 5799999999999999999999753
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=89.45 E-value=0.13 Score=47.55 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=32.7
Q ss_pred cccCCeEEeeccc---hHHHHHHHHHHhCCCEEEEECCC
Q psy7383 172 RIRGDTLGIVGLG---RIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 172 ~L~gktVGIVGlG---~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
+|+||++.|.|.+ .||+++|+.|...|++|++.++.
T Consensus 5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV 43 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 5999999999986 59999999999999999988764
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=89.34 E-value=0.17 Score=46.54 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=27.6
Q ss_pred CeEEee--ccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 176 DTLGIV--GLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 176 ktVGIV--GlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|||.|| |-+.||+++|+.|...|++|++.|++.
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~ 35 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND 35 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 566665 456799999999999999999999864
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=89.17 E-value=0.75 Score=40.17 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=54.6
Q ss_pred CCeEEeec-cchHHHHHHHHHHhC-CCEEEEEC-CCCC-chhhh---hc-C--c-eecCCHHHHHhcCCEEEEeccCchh
Q psy7383 175 GDTLGIVG-LGRIGSAVALRAKAF-GFNVIFYD-PYLP-DGIEK---SL-G--L-TRVYTLQDLLFQSDCVSLHCTLNEH 243 (501)
Q Consensus 175 gktVGIVG-lG~IG~~iA~~L~af-G~~Vi~~d-r~~~-~~~~~---~~-g--v-~~~~sLdelL~~sDvVil~lPlt~~ 243 (501)
..+||||| .|-.|+++.++|... .+++.... ++.. ..... .. . . ......++.+.++|+|++++|..
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~-- 82 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHG-- 82 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSS--
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccc--
Confidence 34799997 699999999999875 45655443 2221 11110 00 1 0 11112345678999999999954
Q ss_pred hhhcccHHHHhcCCCCcEEEEcCCCCccCHH
Q psy7383 244 NHHLINEFTIKQMRPGAFLVNTARGGLVDDD 274 (501)
Q Consensus 244 T~~lI~~~~l~~MK~gAilINvaRG~vVde~ 274 (501)
+..+....+.....+|+.+...-....
T Consensus 83 ----~s~~~~~~l~~~~~~v~~~~~~~~~~~ 109 (183)
T d2cvoa1 83 ----TTQEIIKGLPQELKIVDLSADFRLRDI 109 (183)
T ss_dssp ----HHHHHHHTSCSSCEEEECSSTTTCSCH
T ss_pred ----hHHHHHHHHHhcCcccccchhhhcccc
Confidence 233444555556666666555444333
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.09 E-value=0.27 Score=44.01 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=46.5
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCC--EEEEECCCCCch-hhhhcCc-------eecCCHHHHHhcCCEEEEeccC
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGF--NVIFYDPYLPDG-IEKSLGL-------TRVYTLQDLLFQSDCVSLHCTL 240 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~--~Vi~~dr~~~~~-~~~~~gv-------~~~~sLdelL~~sDvVil~lPl 240 (501)
..+|+|.|.| .|.||+.+++.|..-|. +|++++|+.... ......+ ....++.+.+..+|+|+.++-.
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~ 90 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT 90 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence 5678999995 89999999999987774 899999865321 1111111 1122455667899999877643
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=88.67 E-value=0.16 Score=44.44 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=30.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
++|.|||-|..|...|..|+..|++|+++++..
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 479999999999999999999999999998754
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.52 E-value=0.25 Score=43.44 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=31.3
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+.++|.|||.|.-|-..|..|+..|++|+++..+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34679999999999999999999999999998653
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.24 E-value=0.2 Score=47.43 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=32.5
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
+.|+|.|||.|.-|-.+|..|+..|.+|++++.+..
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 358999999999999999999999999999987653
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.19 E-value=0.27 Score=43.95 Aligned_cols=37 Identities=30% Similarity=0.288 Sum_probs=33.9
Q ss_pred ccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 173 IRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 173 L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
-.+++|.|||-|..|...|..|+..|++|+++++...
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 4789999999999999999999999999999987653
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=88.03 E-value=0.2 Score=47.36 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=44.8
Q ss_pred ccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCCCchh-hh-----h--c--------CceecCCHHHHHhcCCEEE
Q psy7383 173 IRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLPDGI-EK-----S--L--------GLTRVYTLQDLLFQSDCVS 235 (501)
Q Consensus 173 L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~~~~-~~-----~--~--------gv~~~~sLdelL~~sDvVi 235 (501)
-.||+|.|.| .|-||+.+++.|...|++|++..|+..... .. . . .+....++++++..+|+|+
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~ 88 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence 3689999996 577999999999999999998876532110 00 0 0 1111124567788899877
Q ss_pred Eecc
Q psy7383 236 LHCT 239 (501)
Q Consensus 236 l~lP 239 (501)
.+.-
T Consensus 89 ~~a~ 92 (342)
T d1y1pa1 89 HIAS 92 (342)
T ss_dssp ECCC
T ss_pred hhcc
Confidence 5543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.74 E-value=0.13 Score=47.32 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=30.7
Q ss_pred cccCCeEEeeccc-hHHHHHHHHHHhCCCEEEEECCC
Q psy7383 172 RIRGDTLGIVGLG-RIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 172 ~L~gktVGIVGlG-~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
.|.||++.|.|-+ .||+++|+.|...|++|++.+++
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~ 39 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS 39 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence 4899999999654 59999999999999999875543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.49 E-value=0.43 Score=43.60 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=31.5
Q ss_pred ccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 173 IRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 173 L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+.||++-|.|- +.||+++|+.|...|++|+..|++.
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~ 37 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL 37 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46888888876 5699999999999999999999864
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.89 E-value=0.52 Score=40.97 Aligned_cols=64 Identities=16% Similarity=-0.047 Sum_probs=41.6
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC--EEEEECCCCCchhhhhcCceecCCHHHH----HhcCCEEEEeccCc
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF--NVIFYDPYLPDGIEKSLGLTRVYTLQDL----LFQSDCVSLHCTLN 241 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~--~Vi~~dr~~~~~~~~~~gv~~~~sLdel----L~~sDvVil~lPlt 241 (501)
|+|.|+|. |.||+.+++.|...|. +|++..|+......+... ...++.++ ....|.|+.|+-.+
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~--~~~d~~~~~~~~~~~~d~vi~~~g~~ 73 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDN--PVGPLAELLPQLDGSIDTAFCCLGTT 73 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEEC--CBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccc--cccchhhhhhccccchheeeeeeeee
Confidence 78999987 9999999999999997 677666654322111111 11234433 34579998876433
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.22 E-value=0.3 Score=45.31 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=32.8
Q ss_pred cccCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++-|-|- +.||+++|+.|...|++|++.|++.
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 38 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE 38 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 388999999976 4699999999999999999999864
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.21 E-value=0.21 Score=46.09 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=31.4
Q ss_pred cCCeEEee--ccchHHHHHHHHHHh-CCCEEEEECCCCC
Q psy7383 174 RGDTLGIV--GLGRIGSAVALRAKA-FGFNVIFYDPYLP 209 (501)
Q Consensus 174 ~gktVGIV--GlG~IG~~iA~~L~a-fG~~Vi~~dr~~~ 209 (501)
+||+|+|| |-+.||+++|+.|.. .|.+|+.++|+.+
T Consensus 1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~ 39 (275)
T d1wmaa1 1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT 39 (275)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 48999999 889999999999876 5999999998753
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=86.21 E-value=0.29 Score=41.19 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=29.1
Q ss_pred eEEeeccchHHHHHHHHHHhCCC-EEEEECCCC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGF-NVIFYDPYL 208 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~-~Vi~~dr~~ 208 (501)
+|.|||-|..|-..|..|+..|+ +|++++++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 58999999999999999999997 699999764
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.18 E-value=0.33 Score=44.66 Aligned_cols=37 Identities=24% Similarity=0.159 Sum_probs=33.1
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|+||++-|.| .+.||+++|+.|...|++|++.+|+.
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA 39 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 48999998886 47899999999999999999999864
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.02 E-value=0.41 Score=43.14 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=31.5
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.||+|-|.|- +.||+++|+.|...|++|+..|+...
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~ 37 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN 37 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4899999987 66999999999999999999987653
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.54 E-value=0.32 Score=40.95 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=29.7
Q ss_pred EEeeccchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
|.|||-|..|...|..|+..|.+|++++++..
T Consensus 8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 79999999999999999999999999998643
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.11 E-value=0.45 Score=44.22 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=28.3
Q ss_pred CeEEeec-cchHHHHHHHHHHhCCCEEEEECCC
Q psy7383 176 DTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 176 ktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
|+|.|.| .|-||+.+++.|...|.+|+++|+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~ 34 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 34 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 6788884 7889999999999999999999864
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=84.84 E-value=1 Score=40.85 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=37.1
Q ss_pred ccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhcCceecCCH-------HHHHhcCCEEEEeccC
Q psy7383 182 GLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSLGLTRVYTL-------QDLLFQSDCVSLHCTL 240 (501)
Q Consensus 182 GlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~gv~~~~sL-------delL~~sDvVil~lPl 240 (501)
--|.+|.++|+.+..+|++|.++.-..............+.+. .+.+.++|+++.+.-.
T Consensus 30 SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~~~~~D~~i~aAAv 95 (223)
T d1u7za_ 30 SSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAV 95 (223)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBC
T ss_pred CcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhhhccceeEeeeech
Confidence 3699999999999999999998864332111111111122222 3446789988877654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.39 E-value=0.46 Score=43.29 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=32.7
Q ss_pred cccCCeEEeec-cchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 172 RIRGDTLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 172 ~L~gktVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|.||++-|.| -+.||+++|+.|...|++|++.|++.
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~ 40 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE 40 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 38899988875 67899999999999999999999874
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=84.18 E-value=0.7 Score=42.21 Aligned_cols=31 Identities=35% Similarity=0.493 Sum_probs=26.5
Q ss_pred eEEee-ccchHHHHHHHHHHhCCCEEEEECCC
Q psy7383 177 TLGIV-GLGRIGSAVALRAKAFGFNVIFYDPY 207 (501)
Q Consensus 177 tVGIV-GlG~IG~~iA~~L~afG~~Vi~~dr~ 207 (501)
||.|. |.|-||+.+++.|...|++|+++|+.
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~ 33 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNL 33 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence 45555 68999999999999999999999854
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=84.15 E-value=0.28 Score=43.19 Aligned_cols=30 Identities=37% Similarity=0.571 Sum_probs=26.6
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDP 206 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr 206 (501)
||||=|||+||+.+.|.+...+.+|.+.+-
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd 31 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGAQVVAVND 31 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence 799999999999999999888888887753
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=84.08 E-value=0.3 Score=42.84 Aligned_cols=104 Identities=19% Similarity=0.255 Sum_probs=55.5
Q ss_pred CeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhhc-Cceec-CCH-HHHHhcCCEEEEeccCchhhhhcccHH-
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKSL-GLTRV-YTL-QDLLFQSDCVSLHCTLNEHNHHLINEF- 251 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~~-gv~~~-~sL-delL~~sDvVil~lPlt~~T~~lI~~~- 251 (501)
.+|||=|||+||+.+.|.|..-+.+|.+.+.....+....+ ....+ -.+ .++-...|.+++ +.....++...
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i----~g~~I~~~~~~~ 76 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYV----DGKAIRATAVKD 76 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEE----TTEEEEEECCSS
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEe----cceeEEEEecCC
Confidence 37999999999999999998778898887744332211110 00000 001 112223344433 11222222222
Q ss_pred --HHhcCCCCcEEEEcCCCCccCHHHHHHHHHcC
Q psy7383 252 --TIKQMRPGAFLVNTARGGLVDDDSLAAALKQG 283 (501)
Q Consensus 252 --~l~~MK~gAilINvaRG~vVde~aL~~aL~~g 283 (501)
.+..-+-|.-+|=-+.|.-.+.+.+...|+.|
T Consensus 77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g 110 (168)
T d2g82a1 77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG 110 (168)
T ss_dssp GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT
T ss_pred hHHCcccccCCceeEeccccccchHHhhhhhccc
Confidence 22222234444445577778888888888765
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=83.98 E-value=0.82 Score=39.97 Aligned_cols=102 Identities=9% Similarity=0.070 Sum_probs=62.6
Q ss_pred CCeEEeecc-chHHHHHHHHHHh---CCC----EEEEECCCCCchh----hh--h-c------CceecCCHHHHHhcCCE
Q psy7383 175 GDTLGIVGL-GRIGSAVALRAKA---FGF----NVIFYDPYLPDGI----EK--S-L------GLTRVYTLQDLLFQSDC 233 (501)
Q Consensus 175 gktVGIVGl-G~IG~~iA~~L~a---fG~----~Vi~~dr~~~~~~----~~--~-~------gv~~~~sLdelL~~sDv 233 (501)
-.+|.|+|. |.||+.++-+|.. ||. .+..+|.....+. .. . . .+....+..+.++++|+
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv 103 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 103 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence 347999995 9999999999875 453 5666775442211 10 0 0 12233577889999999
Q ss_pred EEEeccCc--h-h--------hhhccc--HHHHhc-CCCCcEEEEcCCCCccCHHHHHH
Q psy7383 234 VSLHCTLN--E-H--------NHHLIN--EFTIKQ-MRPGAFLVNTARGGLVDDDSLAA 278 (501)
Q Consensus 234 Vil~lPlt--~-~--------T~~lI~--~~~l~~-MK~gAilINvaRG~vVde~aL~~ 278 (501)
|++..-.. + + +..++- .+.+.+ .+++++++=++. .+|.-+++.
T Consensus 104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia 160 (175)
T d7mdha1 104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC 160 (175)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence 99986321 1 1 111221 223333 567888877765 588877764
|
| >d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Formyl-CoA transferase species: Oxalobacter formigenes [TaxId: 847]
Probab=83.40 E-value=2.5 Score=40.73 Aligned_cols=113 Identities=13% Similarity=0.107 Sum_probs=74.8
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhhh-----------------cCceec----------CCH
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEKS-----------------LGLTRV----------YTL 224 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~~-----------------~gv~~~----------~sL 224 (501)
-|.|-||.=++-...|-..++.|..+|++||=..+...-+..+. .|-+.+ .-+
T Consensus 3 PL~GirVld~~~~~agp~~~~~LadlGAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~~ 82 (427)
T d2vjma1 3 PLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKELL 82 (427)
T ss_dssp TTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCSGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHHH
Confidence 48899998888888888999999999999998874321011110 011100 126
Q ss_pred HHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC---C-CC---ccCHHHHHHHHHcCCc
Q psy7383 225 QDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA---R-GG---LVDDDSLAAALKQGRI 285 (501)
Q Consensus 225 delL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINva---R-G~---vVde~aL~~aL~~g~I 285 (501)
.+|+++|||||-..+-..--+-=++-+.|+...|.-|++.++ . |. --..+.++.+ .+|-.
T Consensus 83 ~~Lv~~aDv~i~n~~pg~~~rlGL~~~~l~~~NP~LI~~sisgfG~~GP~~~~~~~d~~~qA-~sG~~ 149 (427)
T d2vjma1 83 EQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVKGYAEGHANEHLKVYENVAQC-SGGAA 149 (427)
T ss_dssp HHHHHHCSEEEECCSTTHHHHTTCCHHHHHHHCTTCEEEEEESSCTTSTTTTCCCCHHHHHH-HTTTT
T ss_pred HHHHHhCCeeeECCCcchHHHcCCCchhhhhhCCccceeeeecccccccccccccccccccc-cccch
Confidence 688999999998766433333346899999999999999984 2 21 2344555555 35544
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=83.33 E-value=0.82 Score=37.59 Aligned_cols=63 Identities=25% Similarity=0.182 Sum_probs=37.5
Q ss_pred eEEeeccchHHHHHHHHHH-hCCCEEEEE-CCCCCchhhhhcCcee--cCCHHHHHh-cCCEEEEecc
Q psy7383 177 TLGIVGLGRIGSAVALRAK-AFGFNVIFY-DPYLPDGIEKSLGLTR--VYTLQDLLF-QSDCVSLHCT 239 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~-afG~~Vi~~-dr~~~~~~~~~~gv~~--~~sLdelL~-~sDvVil~lP 239 (501)
+|.|+|+|.+|+.+++.+. .-++++++| |..+...-..-.|+.. .+.++++++ ..++.++++|
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~ 72 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP 72 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence 6999999999999998763 457887765 5433221111123332 234444443 4566666666
|
| >d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=83.26 E-value=1.1 Score=42.42 Aligned_cols=94 Identities=14% Similarity=0.246 Sum_probs=59.5
Q ss_pred cccCCeEEeecc---chHHHHHHHHHHhCC-CEEEEECCCC---Cchh---hhhcC--ceecCCHHHHHhcCCEEEEecc
Q psy7383 172 RIRGDTLGIVGL---GRIGSAVALRAKAFG-FNVIFYDPYL---PDGI---EKSLG--LTRVYTLQDLLFQSDCVSLHCT 239 (501)
Q Consensus 172 ~L~gktVGIVGl---G~IG~~iA~~L~afG-~~Vi~~dr~~---~~~~---~~~~g--v~~~~sLdelL~~sDvVil~lP 239 (501)
.+.|++|+++|- +++...++..+..|+ +++.++.|.. .+.. .+..+ +....++++.++++|+|....-
T Consensus 151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~ 230 (310)
T d1tuga1 151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV 230 (310)
T ss_dssp CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCC
T ss_pred CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeeccc
Confidence 388999999997 788899999898885 7898887642 1111 12222 3445689999999999875321
Q ss_pred Cchh----------hhhcccHHHHhcCCCCcEEEEc
Q psy7383 240 LNEH----------NHHLINEFTIKQMRPGAFLVNT 265 (501)
Q Consensus 240 lt~~----------T~~lI~~~~l~~MK~gAilINv 265 (501)
-.+. ....++.+.++.+|++++|.-+
T Consensus 231 ~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHc 266 (310)
T d1tuga1 231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP 266 (310)
T ss_dssp CGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECC
T ss_pred chhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeC
Confidence 1110 0122455556666666665533
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=83.01 E-value=2.9 Score=34.75 Aligned_cols=96 Identities=32% Similarity=0.479 Sum_probs=61.7
Q ss_pred HHHHhcCCEEEEeccCchhhhhcccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHcCCceEEEEecCCCCCCCCCCCC
Q psy7383 225 QDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDSLAAALKQGRIRAAALDVHESEPYNVFQGN 304 (501)
Q Consensus 225 delL~~sDvVil~lPlt~~T~~lI~~~~l~~MK~gAilINvaRG~vVde~aL~~aL~~g~I~GAaLDVfe~EPl~~~~~p 304 (501)
+.++.++|.+++.- ..-++++.|+++++=-++..++-| +|.-++ +++++..|.-
T Consensus 38 e~~~~~a~~vlv~~------~~~i~~~~l~~~~~Lk~I~~~g~G--~d~iD~-~~~~~~gI~v----------------- 91 (133)
T d1mx3a2 38 EKVLNEAVGALMYH------TITLTREDLEKFKALRIIVRIGSG--FDNIDI-KSAGDLGIAV----------------- 91 (133)
T ss_dssp HHHHHHEEEEEECS------SSCBCHHHHTTCSSCCEEEESSSC--CTTBCH-HHHHHTTCEE-----------------
T ss_pred HHHhccCcEEEEEe------CCCcCHHHHhhCCCCeEEEEcCCC--cccEee-eeheeCCEEE-----------------
Confidence 45677777665431 124788899998776666666665 233222 3344455641
Q ss_pred CCCCCCeEEecCCCCCcHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q psy7383 305 LKDAPNILCTPHAAFYSEASCTELREMAASEIRRAIVGRIPDCLRNCVN 353 (501)
Q Consensus 305 L~~~pNVilTPHiAg~T~ea~~~~~~~~~~ni~~~l~G~~p~~l~N~Vn 353 (501)
.-+|.....+.|..-.+.-.+.+++.+-++|+.|...+||||
T Consensus 92 -------~n~p~~~~~vAE~a~~lil~~~R~i~~a~~g~~~~~~~n~~~ 133 (133)
T d1mx3a2 92 -------CNVPAASVYSEQASIEMREEAAREIRRAITGRIPDSLKNCVN 133 (133)
T ss_dssp -------ECCCSTTHCCHHHHHHHHHHHHHHHHHHHHSCTTTTCSSBCC
T ss_pred -------EcCCCCCchhHHHHHHHHHHHHhhHHHHHhccccchhhcccC
Confidence 112222233446666677778899999999999999999997
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.98 E-value=0.61 Score=39.27 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=23.5
Q ss_pred eEEeec-cchHHHHHHHHHHh-CCCEEE-EECC
Q psy7383 177 TLGIVG-LGRIGSAVALRAKA-FGFNVI-FYDP 206 (501)
Q Consensus 177 tVGIVG-lG~IG~~iA~~L~a-fG~~Vi-~~dr 206 (501)
||+|+| .|+||+.+++.+.. -++++. ++|+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~ 33 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA 33 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 699999 69999999998754 567755 4554
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=82.91 E-value=0.57 Score=43.80 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=29.3
Q ss_pred CeEEeeccchHHHHHHHHHHhCC--CEEEEECCCCC
Q psy7383 176 DTLGIVGLGRIGSAVALRAKAFG--FNVIFYDPYLP 209 (501)
Q Consensus 176 ktVGIVGlG~IG~~iA~~L~afG--~~Vi~~dr~~~ 209 (501)
|+|+|||.|.-|-.+|..|+..| .+|++|+++..
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 68999999999999999987654 69999998753
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=82.46 E-value=0.65 Score=42.36 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=27.0
Q ss_pred CCeEEee-ccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 175 GDTLGIV-GLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 175 gktVGIV-GlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
||.+-|- |-+.||+++|+.|...|++|++++++.
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~ 36 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE 36 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4444444 455799999999999999999999863
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.03 E-value=0.41 Score=43.38 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=30.2
Q ss_pred eEEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
+|.|||.|..|..+|..|+..|.+|+++++..
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 59999999999999999999999999999865
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.93 E-value=0.61 Score=40.94 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=28.8
Q ss_pred eEEeeccchHHHHHHHHHH--hCCCEEEEECCCCC
Q psy7383 177 TLGIVGLGRIGSAVALRAK--AFGFNVIFYDPYLP 209 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~--afG~~Vi~~dr~~~ 209 (501)
+|+|||-|..|...|..|+ .+|++|++|++...
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 7999999999999999885 46899999997653
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=81.88 E-value=0.99 Score=38.20 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=56.7
Q ss_pred CeEEeecc-chHHHHHHHHHHhCCC-------EEEEECCCCCchhhh------h-------cCceecCCHHHHHhcCCEE
Q psy7383 176 DTLGIVGL-GRIGSAVALRAKAFGF-------NVIFYDPYLPDGIEK------S-------LGLTRVYTLQDLLFQSDCV 234 (501)
Q Consensus 176 ktVGIVGl-G~IG~~iA~~L~afG~-------~Vi~~dr~~~~~~~~------~-------~gv~~~~sLdelL~~sDvV 234 (501)
.+|.|+|. |.+|+.+|-.|...+. ....++.....+... . ..+....+..+.+++||+|
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV 84 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA 84 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence 48999996 9999999999976432 122333222111000 0 0122334678899999999
Q ss_pred EEeccCc--h-hhh-hcc--cH-------HHHhc-CCCCcEEEEcCCCCccCHHHHH
Q psy7383 235 SLHCTLN--E-HNH-HLI--NE-------FTIKQ-MRPGAFLVNTARGGLVDDDSLA 277 (501)
Q Consensus 235 il~lPlt--~-~T~-~lI--~~-------~~l~~-MK~gAilINvaRG~vVde~aL~ 277 (501)
+++.-.. + +++ .++ |. ..+.+ .+++++++.++. .+|.-..+
T Consensus 85 iitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~~ 139 (154)
T d1y7ta1 85 LLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNALI 139 (154)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHH
T ss_pred EeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHHH
Confidence 9986321 1 121 111 11 12223 567898888865 47665543
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.86 E-value=2 Score=40.67 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHcCCccCCchhhhhhccccccccCCeEEeeccchHHHHHHHHHHhC----CC-----
Q psy7383 129 VADTTLCLILNLYRRTYWLANMVREGKKFTGPEQLREAASGCARIRGDTLGIVGLGRIGSAVALRAKAF----GF----- 199 (501)
Q Consensus 129 VAE~alal~L~l~R~~~~~~~~~~~g~w~~~~~~~~~~~~g~~~L~gktVGIVGlG~IG~~iA~~L~af----G~----- 199 (501)
+|=-+++-+|+.+|-. + +.|.+.+|.|.|.|.-|-.+|+.+... |+
T Consensus 4 Ta~V~lAglinAlki~---------g----------------k~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a 58 (294)
T d1pj3a1 4 TAAVALAGLLAAQKVI---------S----------------KPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEA 58 (294)
T ss_dssp HHHHHHHHHHHHHHHH---------C----------------CCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHh---------C----------------CCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhc
Confidence 4556677777777642 1 247888999999999999999998654 32
Q ss_pred --EEEEECCCC----Cc-h---hhhhc----Cc-eecCCHHHHHh--cCCEEEEeccCchhhhhcccHHHHh---cCCCC
Q psy7383 200 --NVIFYDPYL----PD-G---IEKSL----GL-TRVYTLQDLLF--QSDCVSLHCTLNEHNHHLINEFTIK---QMRPG 259 (501)
Q Consensus 200 --~Vi~~dr~~----~~-~---~~~~~----gv-~~~~sLdelL~--~sDvVil~lPlt~~T~~lI~~~~l~---~MK~g 259 (501)
+++.+|+.- .. + ..+.. .. ....+|+|+++ +.|+++-+.. .-++|+++.++ .|.+.
T Consensus 59 ~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~~~~~ 134 (294)
T d1pj3a1 59 QKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAG----AGRLFTPDVIRAMASINER 134 (294)
T ss_dssp HHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCC----SSCCSCHHHHHHHHHHCSS
T ss_pred cccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhcCCceEEEecC----CCCcCCHHHHHHHHhcCCC
Confidence 488888641 11 1 00110 00 11237888876 7888776532 24678887775 45699
Q ss_pred cEEEEcCCCCcc---CHHHHHHHHHcCCce
Q psy7383 260 AFLVNTARGGLV---DDDSLAAALKQGRIR 286 (501)
Q Consensus 260 AilINvaRG~vV---de~aL~~aL~~g~I~ 286 (501)
.++.=.|...-- +.++.++. .+|+..
T Consensus 135 PIIFaLSNPt~~~e~~~~~a~~~-t~grai 163 (294)
T d1pj3a1 135 PVIFALSNPTAQAECTAEEAYTL-TEGRCL 163 (294)
T ss_dssp CEEEECCSSGGGCSCCHHHHHHH-TTTCCE
T ss_pred cEEEEccCCCCcCCcCHHHHHhh-ccCceE
Confidence 999999987542 33444433 445543
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.76 E-value=0.66 Score=41.47 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=26.8
Q ss_pred eEEeec-cchHHHHHHHHHHhCCCEEEEECCCCC
Q psy7383 177 TLGIVG-LGRIGSAVALRAKAFGFNVIFYDPYLP 209 (501)
Q Consensus 177 tVGIVG-lG~IG~~iA~~L~afG~~Vi~~dr~~~ 209 (501)
.|-|.| .+.||+++|+.|...|++|++.|++..
T Consensus 3 VvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 3 IIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 344445 577999999999999999999998643
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=81.33 E-value=0.62 Score=35.57 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=30.4
Q ss_pred cCCeEEeecc-chHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 174 RGDTLGIVGL-GRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 174 ~gktVGIVGl-G~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
.+.+|.|.|- |.+|....+.++.+|++|++..++.
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~ 66 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE 66 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence 5678888765 9999999999999999999987764
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=80.90 E-value=0.7 Score=36.94 Aligned_cols=34 Identities=24% Similarity=-0.113 Sum_probs=28.5
Q ss_pred CCeEEeeccchHHHHHHHHHHh---CCCEEEEECCCC
Q psy7383 175 GDTLGIVGLGRIGSAVALRAKA---FGFNVIFYDPYL 208 (501)
Q Consensus 175 gktVGIVGlG~IG~~iA~~L~a---fG~~Vi~~dr~~ 208 (501)
.+++.|||-|.+|-++|..+.+ .|.+|..+.+..
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence 4799999999999999987655 488999887653
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=80.83 E-value=0.58 Score=41.11 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=24.4
Q ss_pred eEEeeccchHHHHHHHHHHhCC---CEEEEECC
Q psy7383 177 TLGIVGLGRIGSAVALRAKAFG---FNVIFYDP 206 (501)
Q Consensus 177 tVGIVGlG~IG~~iA~~L~afG---~~Vi~~dr 206 (501)
+|||=|||+||+.+.|.+.... ++|.+.+-
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd 34 (172)
T d1rm4a1 2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIND 34 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence 7999999999999999886543 67777653
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=80.81 E-value=0.51 Score=39.58 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=26.9
Q ss_pred cCCeEEeeccchHHHHHHHHHHhCCCEEEEE
Q psy7383 174 RGDTLGIVGLGRIGSAVALRAKAFGFNVIFY 204 (501)
Q Consensus 174 ~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~ 204 (501)
++++|.|||-|.+|-.+|..|+.+|.+|.++
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~ 32 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIR 32 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence 4688999999999999999999999875443
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=80.30 E-value=0.63 Score=41.55 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=29.4
Q ss_pred EEeeccchHHHHHHHHHHhCCCEEEEECCCC
Q psy7383 178 LGIVGLGRIGSAVALRAKAFGFNVIFYDPYL 208 (501)
Q Consensus 178 VGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~ 208 (501)
|.|||-|-+|..+|..|...|.+|+++|+..
T Consensus 7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 8999999999999999999999999999864
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=80.07 E-value=2.5 Score=40.52 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=68.1
Q ss_pred cccCCeEEeeccchHHHHHHHHHHhCCCEEEEECCCCCchhhh---------hcCceec----------CCHHHHHhcCC
Q psy7383 172 RIRGDTLGIVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIEK---------SLGLTRV----------YTLQDLLFQSD 232 (501)
Q Consensus 172 ~L~gktVGIVGlG~IG~~iA~~L~afG~~Vi~~dr~~~~~~~~---------~~gv~~~----------~sLdelL~~sD 232 (501)
-|.|-+|.=++-...|-..++.|..+|++||=..+....+..+ ..|.+.+ .-+.+|+++||
T Consensus 8 PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~aD 87 (402)
T d1xk7a1 8 PLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTD 87 (402)
T ss_dssp TTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTTCS
T ss_pred CCCCCEEEEeCChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhhcC
Confidence 3899999999988889899999999999999887533111110 1121111 12568999999
Q ss_pred EEEEeccCchhhhhcccHHHHhcCCCCcEEEEcC
Q psy7383 233 CVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTA 266 (501)
Q Consensus 233 vVil~lPlt~~T~~lI~~~~l~~MK~gAilINva 266 (501)
||+-......-.+-=++-+.|+.++|.-|.+.++
T Consensus 88 v~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sis 121 (402)
T d1xk7a1 88 IFIEASKGPAFARRGITDEVLWQHNPKLVIAHLS 121 (402)
T ss_dssp EEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred Cceeeecccccccccccccchhhccccccceeee
Confidence 9998776443334446889999999999999883
|