Psyllid ID: psy7464

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTEGNVLMMLEQLPFGWPKKFSEPTTDASEDYQ
Secondary Structure (PSIPRED)
cEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccHHcccccHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccHHHEEHHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mallvlgdpedvknneDKIYSIAKRyggipagesngrrgYMLTYIIAYIRDFACdyyfigdsfetsvpwdkTVLLCINVKKRLTRECTEGNVLMMLeqlpfgwpkkfsepttdasedyq
Flexible Loop (DISEMBL)
mallvlgdpedvknnEDKIYSIakryggipagesngrRGYMLTYIIAYIRDFACDYYFIGDSfetsvpwdktVLLCINVKKRLTRECTEGNVLMMleqlpfgwpkkfsepttdasedyq
Low Complexity Region (SEG)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTEGNVLMMLEQLPFGWPKKFSEPTTDASEDYQ
Disordered region (IsUnstruct)
*****************KIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTEGNVLMMLEQLPFGWP***************
Disordered Region (DISOPRED)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTEGNVLMMLEQLPFGWPKKFSEPTT*A*****
Disordered Region (DISEMBL)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTEGNVLMMLEQLPFGWPKKF************
Disordered Region (DISPRO)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTEGNVLMMLEQLPFGWPKKFSEPTTDAS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTEGNVLMMLEQLPFGWPKKFSEPTTDASEDYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
O00116	658	Alkyldihydroxyacetonephos	yes	N/A	0.764	0.138	0.593	2e-27
Q8C0I1	645	Alkyldihydroxyacetonephos	yes	N/A	0.764	0.141	0.571	2e-26
P97275	658	Alkyldihydroxyacetonephos	yes	N/A	0.756	0.136	0.577	2e-26
Q9EQR2	644	Alkyldihydroxyacetonephos	yes	N/A	0.764	0.141	0.549	8e-26
Q9V778	631	Alkyldihydroxyacetonephos	yes	N/A	0.756	0.142	0.511	4e-22
O45218	597	Alkyldihydroxyacetonephos	yes	N/A	0.722	0.144	0.430	1e-16

>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens GN=AGPS PE=1 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 69/91 (75%)

Query: 2   ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
            LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+
Sbjct: 467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGE 526

Query: 62  SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           SFETS PWD+ V LC NVK+R+TREC E  V
Sbjct: 527 SFETSAPWDRVVDLCRNVKERITRECKEKGV 557

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 2EC: 6

>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus musculus GN=Agps PE=1 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 67/91 (73%)

Query: 2   ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
            LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+
Sbjct: 454 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGE 513

Query: 62  SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           SFETS PWD+ + LC NVK+R+ REC E  V
Sbjct: 514 SFETSAPWDRVIDLCRNVKERIRRECKERGV 544

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia porcellus GN=AGPS PE=1 SV=1

 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 67/90 (74%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           FETS PWD+ V LC NVK+R+ REC E  V
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRRECKEKGV 557

Cavia porcellus (taxid: 10141)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus norvegicus GN=Agps PE=2 SV=1

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 67/91 (73%)

Query: 2   ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
            LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY +G+
Sbjct: 453 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGE 512

Query: 62  SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           SFETS PWD+ + LC NVK+R+ REC E  V
Sbjct: 513 SFETSAPWDRVIDLCRNVKERIRRECKERGV 543

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster GN=CG10253 PE=2 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 64/90 (71%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD +DV+  E  IY IA+++ G PAG  NG RGY+LT++IAYIRDF      + +S
Sbjct: 420 LLFEGDLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAES 479

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           FETSVPWD+  LLC +VK+R+  EC++ ++
Sbjct: 480 FETSVPWDRCSLLCRSVKQRVVSECSKRSI 509

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans GN=ads-1 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 58/86 (67%)

Query: 7   GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 66
           G+ E+V  +E+++  +A+++ G+  G  NG+ GY LT+ IAY+RD   ++  +G+SFETS
Sbjct: 401 GNREEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFETS 460

Query: 67  VPWDKTVLLCINVKKRLTRECTEGNV 92
           VPWDK + LC NVK+ + RE     V
Sbjct: 461 VPWDKVLSLCRNVKELMKREAKAQGV 486

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
402888755	660	PREDICTED: alkyldihydroxyacetonephosphat	0.756	0.136	0.6	6e-26
119631463	684	alkylglycerone phosphate synthase, isofo	0.756	0.131	0.6	7e-26
426337844	626	PREDICTED: alkyldihydroxyacetonephosphat	0.756	0.143	0.6	7e-26
403258679	652	PREDICTED: alkyldihydroxyacetonephosphat	0.764	0.139	0.593	8e-26
390464346	652	PREDICTED: alkyldihydroxyacetonephosphat	0.764	0.139	0.593	8e-26
397489093	658	PREDICTED: alkyldihydroxyacetonephosphat	0.764	0.138	0.593	8e-26
441668210	656	PREDICTED: alkyldihydroxyacetonephosphat	0.764	0.138	0.593	8e-26
355750655	584	hypothetical protein EGM_04101, partial	0.764	0.155	0.593	8e-26
410035918	658	PREDICTED: alkyldihydroxyacetonephosphat	0.764	0.138	0.593	8e-26
4501993	658	alkyldihydroxyacetonephosphate synthase,	0.764	0.138	0.593	8e-26

>gi|402888755|ref|XP_003907714.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Papio anubis]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 470 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 529

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           FETS PWD+ V LC NVK+R+TREC E  V
Sbjct: 530 FETSAPWDRVVDLCRNVKERITRECKEKGV 559

Source: Papio anubis

Species: Papio anubis

Genus: Papio

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119631463|gb|EAX11058.1| alkylglycerone phosphate synthase, isoform CRA_b [Homo sapiens]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 494 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 553

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           FETS PWD+ V LC NVK+R+TREC E  V
Sbjct: 554 FETSAPWDRVVDLCRNVKERITRECKEKGV 583

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426337844|ref|XP_004032904.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal [Gorilla gorilla gorilla]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 436 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 495

Query: 63  FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           FETS PWD+ V LC NVK+R+TREC E  V
Sbjct: 496 FETSAPWDRVVDLCRNVKERITRECKEKGV 525

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403258679|ref|XP_003921880.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Saimiri boliviensis boliviensis]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 69/91 (75%)

Query: 2   ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
            LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+
Sbjct: 461 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGE 520

Query: 62  SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           SFETS PWD+ V LC NVK+R+TREC E  V
Sbjct: 521 SFETSAPWDRVVDLCRNVKERITRECKEKGV 551

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390464346|ref|XP_002749324.2| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Callithrix jacchus]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 69/91 (75%)

Query: 2   ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
            LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+
Sbjct: 461 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGE 520

Query: 62  SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           SFETS PWD+ V LC NVK+R+TREC E  V
Sbjct: 521 SFETSAPWDRVVDLCKNVKERITRECKEKGV 551

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397489093|ref|XP_003815571.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Pan paniscus]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 69/91 (75%)

Query: 2   ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
            LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+
Sbjct: 467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGE 526

Query: 62  SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           SFETS PWD+ V LC NVK+R+TREC E  V
Sbjct: 527 SFETSAPWDRVVDLCRNVKERITRECKEKGV 557

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|441668210|ref|XP_003253813.2| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 1 [Nomascus leucogenys]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 69/91 (75%)

Query: 2   ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
            LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+
Sbjct: 465 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGE 524

Query: 62  SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           SFETS PWD+ V LC NVK+R+TREC E  V
Sbjct: 525 SFETSAPWDRVVDLCRNVKERITRECKEKGV 555

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355750655|gb|EHH54982.1| hypothetical protein EGM_04101, partial [Macaca fascicularis]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 69/91 (75%)

Query: 2   ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
            LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+
Sbjct: 393 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGE 452

Query: 62  SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           SFETS PWD+ V LC NVK+R+TREC E  V
Sbjct: 453 SFETSAPWDRVVDLCRNVKERITRECKEKGV 483

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410035918|ref|XP_001154263.3| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal isoform 4 [Pan troglodytes] gi|410263926|gb|JAA19929.1| alkylglycerone phosphate synthase [Pan troglodytes] gi|410360448|gb|JAA44733.1| alkylglycerone phosphate synthase [Pan troglodytes]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 69/91 (75%)

Query: 2   ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
            LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+
Sbjct: 467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGE 526

Query: 62  SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           SFETS PWD+ V LC NVK+R+TREC E  V
Sbjct: 527 SFETSAPWDRVVDLCRNVKERITRECKEKGV 557

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|4501993|ref|NP_003650.1| alkyldihydroxyacetonephosphate synthase, peroxisomal precursor [Homo sapiens] gi|2498106|sp|O00116.1|ADAS_HUMAN RecName: Full=Alkyldihydroxyacetonephosphate synthase, peroxisomal; Short=Alkyl-DHAP synthase; AltName: Full=Aging-associated gene 5 protein; AltName: Full=Alkylglycerone-phosphate synthase; Flags: Precursor gi|1922285|emb|CAA70591.1| alkyl-dihydroxyacetonephosphate synthase precursor [Homo sapiens] gi|47118009|gb|AAT11152.1| aging-associated protein 5 [Homo sapiens] gi|146327787|gb|AAI41821.1| Alkylglycerone phosphate synthase [Homo sapiens] gi|189054871|dbj|BAG36924.1| unnamed protein product [Homo sapiens]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 69/91 (75%)

Query: 2   ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGD 61
            LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+
Sbjct: 467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGE 526

Query: 62  SFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           SFETS PWD+ V LC NVK+R+TREC E  V
Sbjct: 527 SFETSAPWDRVVDLCRNVKERITRECKEKGV 557

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
UNIPROTKB|O00116	658	AGPS "Alkyldihydroxyacetonepho	0.756	0.136	0.6	1.2e-25
UNIPROTKB|E1BPV2	576	AGPS "Uncharacterized protein"	0.756	0.156	0.588	1.7e-25
UNIPROTKB|E2QVV9	653	AGPS "Uncharacterized protein"	0.756	0.137	0.588	2.4e-25
UNIPROTKB|F6Y1U6	663	AGPS "Uncharacterized protein"	0.756	0.135	0.588	2.5e-25
UNIPROTKB|J9NZ69	699	AGPS "Uncharacterized protein"	0.756	0.128	0.588	2.8e-25
UNIPROTKB|I3LM15	646	AGPS "Uncharacterized protein"	0.756	0.139	0.588	3e-25
UNIPROTKB|F1P5J7	638	AGPS "Uncharacterized protein"	0.756	0.141	0.588	3.7e-25
MGI|MGI:2443065	645	Agps "alkylglycerone phosphate	0.756	0.139	0.577	1e-24
UNIPROTKB|P97275	658	AGPS "Alkyldihydroxyacetonepho	0.756	0.136	0.577	1.4e-24
RGD|620364	644	Agps "alkylglycerone phosphate	0.756	0.139	0.555	2.8e-24

UNIPROTKB|O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Homo sapiens (taxid:9606)]

 Score = 299 (110.3 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct:   468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 527

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
             FETS PWD+ V LC NVK+R+TREC E  V
Sbjct:   528 FETSAPWDRVVDLCRNVKERITRECKEKGV 557

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISS;TAS

GO:0071949 "FAD binding" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E1BPV2 AGPS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 296 (109.3 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   386 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 445

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
             FETS PWD+ V LC NVK+R+TREC E  V
Sbjct:   446 FETSAPWDRVVDLCRNVKERITRECKEKGV 475

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|E2QVV9 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 296 (109.3 bits), Expect = 2.4e-25, P = 2.4e-25
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   463 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 522

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
             FETS PWD+ V LC NVK+R+TREC E  V
Sbjct:   523 FETSAPWDRVVDLCRNVKERITRECKEKGV 552

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|F6Y1U6 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 296 (109.3 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   473 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 532

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
             FETS PWD+ V LC NVK+R+TREC E  V
Sbjct:   533 FETSAPWDRVVDLCRNVKERITRECKEKGV 562

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|J9NZ69 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 296 (109.3 bits), Expect = 2.8e-25, P = 2.8e-25
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   469 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGES 528

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
             FETS PWD+ V LC NVK+R+TREC E  V
Sbjct:   529 FETSAPWDRVVDLCRNVKERITRECKEKGV 558

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|I3LM15 AGPS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 295 (108.9 bits), Expect = 3.0e-25, P = 3.0e-25
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+S
Sbjct:   496 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVLGES 555

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
             FETS PWD+ V LC NVK+R+TREC E  V
Sbjct:   556 FETSAPWDRVVDLCRNVKERITRECKEKGV 585

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1P5J7 AGPS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 294 (108.6 bits), Expect = 3.7e-25, P = 3.7e-25
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+S
Sbjct:   448 LLFEGDREKVLQHEKQVYDIATKFGGLAAGEDNGQRGYMLTFVIAYLRDLGLDYYVIGES 507

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
             FETSVPWD+ + LC NVK+R+ REC E  V
Sbjct:   508 FETSVPWDRVLDLCRNVKERIVRECKEKGV 537

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

MGI|MGI:2443065 Agps "alkylglycerone phosphate synthase" [Mus musculus (taxid:10090)]

 Score = 290 (107.1 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 52/90 (57%), Positives = 67/90 (74%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+S
Sbjct:   455 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGES 514

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
             FETS PWD+ + LC NVK+R+ REC E  V
Sbjct:   515 FETSAPWDRVIDLCRNVKERIRRECKERGV 544

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=ISO

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|P97275 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Cavia porcellus (taxid:10141)]

 Score = 289 (106.8 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 52/90 (57%), Positives = 67/90 (74%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct:   468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
             FETS PWD+ V LC NVK+R+ REC E  V
Sbjct:   528 FETSAPWDRVVDLCRNVKERIRRECKEKGV 557

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0008611 "ether lipid biosynthetic process" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

RGD|620364 Agps "alkylglycerone phosphate synthase" [Rattus norvegicus (taxid:10116)]

 Score = 286 (105.7 bits), Expect = 2.8e-24, P = 2.8e-24
 Identities = 50/90 (55%), Positives = 67/90 (74%)

Query:     3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
             LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY +G+S
Sbjct:   454 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGES 513

Query:    63 FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
             FETS PWD+ + LC NVK+R+ REC E  V
Sbjct:   514 FETSAPWDRVIDLCRNVKERIRRECKERGV 543

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005777 "peroxisome" evidence=ISO;IDA;TAS

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=ISO;IDA

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISS

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0042221 "response to chemical stimulus" evidence=IEP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0071949 "FAD binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EQR2	ADAS_RAT	2, ., 5, ., 1, ., 2, 6	0.5494	0.7647	0.1413	yes	N/A
O00116	ADAS_HUMAN	2, ., 5, ., 1, ., 2, 6	0.5934	0.7647	0.1382	yes	N/A
P97275	ADAS_CAVPO	2, ., 5, ., 1, ., 2, 6	0.5777	0.7563	0.1367	yes	N/A
Q9V778	ADAS_DROME	2, ., 5, ., 1, ., 2, 6	0.5111	0.7563	0.1426	yes	N/A
Q8C0I1	ADAS_MOUSE	2, ., 5, ., 1, ., 2, 6	0.5714	0.7647	0.1410	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG1233|consensus	613		99.81
PF02913	248	FAD-oxidase_C: FAD linked oxidases, C-terminal dom	98.67
TIGR00387	413	glcD glycolate oxidase, subunit GlcD. This protein	98.16
PRK11230	499	glycolate oxidase subunit GlcD; Provisional	97.68
PLN02805	555	D-lactate dehydrogenase [cytochrome]	97.38
COG3286	204	Uncharacterized protein conserved in archaea [Func	91.48

>KOG1233|consensus

Probab=99.81  E-value=2.6e-20  Score=157.11  Aligned_cols=95  Identities=48%  Similarity=0.909  Sum_probs=92.2

Q ss_pred             CEEEEeCChHHHHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchHHHHHHHH
Q psy7464           1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK   80 (119)
Q Consensus         1 ~vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~   80 (119)
                      +++.|||+.++|+++++++++|+.+++|+..|..+|+..+..+|.+.|+||+-+.+|++.|+|||++|||++..||++|+
T Consensus       421 ATllfEGdre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVK  500 (613)
T KOG1233|consen  421 ATLLFEGDREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVK  500 (613)
T ss_pred             hhheecccHHHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCccee
Q psy7464          81 KRLTRECTEGNVLMM   95 (119)
Q Consensus        81 ~al~~al~~~g~~~~   95 (119)
                      ++++++++++|+...
T Consensus       501 er~~rEck~~gv~~~  515 (613)
T KOG1233|consen  501 ERMKRECKAQGVTHP  515 (613)
T ss_pred             HHHHHHHHhcCCCcc
Confidence            999999999998665

>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage

Probab=98.67  E-value=1.6e-08  Score=75.78  Aligned_cols=86  Identities=23%  Similarity=0.265  Sum_probs=68.6

Q ss_pred             CEEEEeCChH-HHHhHHH-HHHHHHHHcCCcc-----CCCcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchH
Q psy7464           1 MALLVLGDPE-DVKNNED-KIYSIAKRYGGIP-----AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTV   73 (119)
Q Consensus         1 ~vlgfEG~~~-~V~~~~~-~~~~I~~~~GG~~-----~G~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~   73 (119)
                      ++++|+|+++ .++.+.+ .+.++++++|+..     -.+...+.|...++..+|+++.....|...+++|++++|++++
T Consensus        62 llv~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~  141 (248)
T PF02913_consen   62 LLVEFEGSDEEAVEEQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLP  141 (248)
T ss_dssp             EEEECCCHHHCCHHHHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhh
Confidence            4789999994 5666666 7888888888764     1223457788877777899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy7464          74 LLCINVKKRLTRE   86 (119)
Q Consensus        74 ~l~~~V~~al~~a   86 (119)
                      ++++.+++.+.+.
T Consensus       142 ~~~~~~~~~~~~~  154 (248)
T PF02913_consen  142 EFLREIRALLREY  154 (248)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             hHHHhhhhhhhhc
Confidence            9999996665544

The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....

>TIGR00387 glcD glycolate oxidase, subunit GlcD

Probab=98.16  E-value=5.3e-06  Score=69.33  Aligned_cols=96  Identities=15%  Similarity=0.117  Sum_probs=71.5

Q ss_pred             CEEEEeCChHHHHhHHHHHHHHHHHcCCccC----C-CcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchHHH
Q psy7464           1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL   75 (119)
Q Consensus         1 ~vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~----G-~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l   75 (119)
                      +++.|+|..+.++.+.+++.++++++|+...    + +...+.|...++..|++++.. ...+   +.|+++||++++++
T Consensus       234 l~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l~~~  309 (413)
T TIGR00387       234 LLVEIDGVHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKLPEA  309 (413)
T ss_pred             EEEEecCCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHHHHH
Confidence            3578999999999999999999999988532    1 245667888777788988742 2222   35799999999999


Q ss_pred             HHHHHHHHHHHHHhCCccee-EeeecccCC
Q psy7464          76 CINVKKRLTRECTEGNVLMM-LEQLPFGWP  104 (119)
Q Consensus        76 ~~~V~~al~~al~~~g~~~~-~~~l~~~~~  104 (119)
                      ++.+++.+    ++.|.... +.|+..++.
T Consensus       310 ~~~~~~~~----~~~~~~~~~~gH~g~g~l  335 (413)
T TIGR00387       310 LRGIADIA----RKYDFTIANFGHAGDGNL  335 (413)
T ss_pred             HHHHHHHH----HHcCCeEEEEEEecCCcc
Confidence            99986665    44566665 888766543

This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.

>PRK11230 glycolate oxidase subunit GlcD; Provisional

Probab=97.68  E-value=0.00012  Score=63.09  Aligned_cols=90  Identities=8%  Similarity=0.046  Sum_probs=63.4

Q ss_pred             CEEEEeCChHHHHhHHHHHHHHHHHcCCccCC-----CcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchHHH
Q psy7464           1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAG-----ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL   75 (119)
Q Consensus         1 ~vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~G-----~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l   75 (119)
                      +++.|+|+++.|+.+.+++.++|+++|+..+.     ++..+.|..-+...|+++..  ..+++.  .++++||++++.+
T Consensus       291 ll~e~~g~~~~v~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~~--~dv~vP~~~l~~~  366 (499)
T PRK11230        291 LLCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYYC--MDGTIPRRELPGV  366 (499)
T ss_pred             EEEEecCCchHHHHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCeeE--EeecCChHHHHHH
Confidence            35788999999999999999999999975332     12345676633456787762  334444  4999999999999


Q ss_pred             HHHHHHHHHHHHHhCCccee-Eee
Q psy7464          76 CINVKKRLTRECTEGNVLMM-LEQ   98 (119)
Q Consensus        76 ~~~V~~al~~al~~~g~~~~-~~~   98 (119)
                      ++.+++.    +++.+.... +-|
T Consensus       367 ~~~~~~~----~~~~~~~~~~~gH  386 (499)
T PRK11230        367 LEGIARL----SQQYGLRVANVFH  386 (499)
T ss_pred             HHHHHHH----HHHcCCeEEEEEE
Confidence            9999764    344555544 444

>PLN02805 D-lactate dehydrogenase [cytochrome]

Probab=97.38  E-value=0.00067  Score=59.53  Aligned_cols=93  Identities=12%  Similarity=0.058  Sum_probs=63.3

Q ss_pred             CEEEEeCChHHHHhHHHHHHHHHHHcCCcc--CCCc---chhhhhhhhhhh-hhhhhhhhhccCceeeeeccccccchHH
Q psy7464           1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIP--AGES---NGRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWDKTVL   74 (119)
Q Consensus         1 ~vlgfEG~~~~V~~~~~~~~~I~~~~GG~~--~G~~---~g~~W~~~RF~~-PYLRd~l~~~G~~~DT~ETA~~Ws~v~~   74 (119)
                      +++.|+|+++.++.+.+.+.+||+++|+..  +...   ..+.|.. |-.. +.+..  ...+....+.++++||+++++
T Consensus       366 Ll~e~~g~~~~~~~~~~~~~~i~~~~g~~~~~~a~~~~e~~~lW~~-R~~~~~~~~~--~~~~~~~~~~DvaVP~s~L~e  442 (555)
T PLN02805        366 LMFEFIGTEAYAREQTLIVQKIASKHNGSDFVFAEEPEAKKELWKI-RKEALWACFA--MEPKYEAMITDVCVPLSHLAE  442 (555)
T ss_pred             EEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHH-HHHHHHHHhh--cCCCCceeEEEEEEEHHHHHH
Confidence            467889999999999999999999999842  2222   2445663 4333 22211  122444557899999999999


Q ss_pred             HHHHHHHHHHHHHHhCCccee-Eeeec
Q psy7464          75 LCINVKKRLTRECTEGNVLMM-LEQLP  100 (119)
Q Consensus        75 l~~~V~~al~~al~~~g~~~~-~~~l~  100 (119)
                      +++.+++.+    ++.+.... |.|+.
T Consensus       443 ~i~~~~~~~----~~~~~~~~~~gHaG  465 (555)
T PLN02805        443 LISRSKKEL----DASPLVCTVIAHAG  465 (555)
T ss_pred             HHHHHHHHH----HHcCCeEEEEEEcC
Confidence            999986654    56666655 67663

>COG3286 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.48  E-value=0.76  Score=36.09  Aligned_cols=84  Identities=14%  Similarity=0.182  Sum_probs=60.0

Q ss_pred             EEEeCChHHHHhHHHHHHHHHHHcCCccCCCcch-----hhhhhhhhhhh--hhhhhhhhccCcee----eeeccccccc
Q psy7464           3 LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNG-----RRGYMLTYIIA--YIRDFACDYYFIGD----SFETSVPWDK   71 (119)
Q Consensus         3 lgfEG~~~~V~~~~~~~~~I~~~~GG~~~G~~~g-----~~W~~~RF~~P--YLRd~l~~~G~~~D----T~ETA~~Ws~   71 (119)
                      +-..|.++.++...+.+.++.++.-+..-+...|     .--..++=+.|  -|+|.|.-+|+=++    -++|++||+.
T Consensus        41 V~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~~e  120 (204)
T COG3286          41 VNVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPWSE  120 (204)
T ss_pred             EEEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCHHH
Confidence            3457889999999999999988877654333211     11122222232  59999999998764    5899999999


Q ss_pred             hHHHHHHHHHHHHHH
Q psy7464          72 TVLLCINVKKRLTRE   86 (119)
Q Consensus        72 v~~l~~~V~~al~~a   86 (119)
                      +..+..++-+..+.+
T Consensus       121 v~E~vreLse~~~E~  135 (204)
T COG3286         121 VVELVRELSEVYREA  135 (204)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999887776665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
4bc7_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		2e-27
4bca_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		2e-27
4bby_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		2e-27

>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 67/90 (74%)
Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63  FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           FETS PWD+ V LC NVK+R+ REC E  V
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRRECKEKGV 557

>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 67/90 (74%)
Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63  FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           FETS PWD+ V LC NVK+R+ REC E  V
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRRECKEKGV 557

>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 67/90 (74%)
Query: 3   LLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 62
           LL  GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 63  FETSVPWDKTVLLCINVKKRLTRECTEGNV 92
           FETS PWD+ V LC NVK+R+ REC E  V
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRRECKEKGV 557

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	2e-19

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584

 Score = 81.7 bits (202), Expect = 2e-19
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 1   MALLVL---GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYY 57
           + L ++   G  + V  +   ++ I  +      G + G+      Y + YIRDF  D+ 
Sbjct: 392 VCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHN 451

Query: 58  FIGDSFETSVPWDKTVLLCINVKKRLTRECTEGNV 92
              D  ET+V +     L  + K+   +   +  +
Sbjct: 452 MWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGI 486

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	99.51
4bby_A	658	Alkyldihydroxyacetonephosphate synthase, peroxiso;	99.3
1e8g_A	560	Vanillyl-alcohol oxidase; oxidoreductase, flavoenz	97.64
1f0x_A	571	DLDH, D-lactate dehydrogenase; oxidoreductase; HET	97.33
3pm9_A	476	Putative oxidoreductase; putative D-2-hydroxygluta	97.26
2exr_A	524	Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin	95.69
1wvf_A	520	4-cresol dehydrogenase [hydroxylating] flavoprote	95.46

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*

Probab=99.51  E-value=2.2e-14  Score=123.33  Aligned_cols=105  Identities=17%  Similarity=0.258  Sum_probs=98.3

Q ss_pred             CEEEEeCChHHHHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchHHHHHHHH
Q psy7464           1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK   80 (119)
Q Consensus         1 ~vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~   80 (119)
                      +++.|+|+++.|+.+.+++.++|+++||..+++...+.|+..|+..||+|+.++++|.+.+++||++||++++++++.++
T Consensus       395 llve~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~  474 (584)
T 2uuu_A          395 SIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAK  474 (584)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHH
Confidence            36789999999999999999999999998888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCccee-EeeecccCCC
Q psy7464          81 KRLTRECTEGNVLMM-LEQLPFGWPK  105 (119)
Q Consensus        81 ~al~~al~~~g~~~~-~~~l~~~~~~  105 (119)
                      +.+.+.+.+.|.++. |+|+.|.|++
T Consensus       475 ~~l~~~~~~~g~~~~~~~h~gH~gd~  500 (584)
T 2uuu_A          475 QTFVKHFKDQGIPAWICAHISHTYTN  500 (584)
T ss_dssp             HHHHHHHHTTTCCEEEEEEEEEEETT
T ss_pred             HHHHhHHHhcCCeeEEEEEEEeecCC
Confidence            999999999999988 9999988865

>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*

Probab=99.30  E-value=6.3e-12  Score=108.86  Aligned_cols=104  Identities=50%  Similarity=0.949  Sum_probs=96.2

Q ss_pred             EEEEeCChHHHHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchHHHHHHHHH
Q psy7464           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKK   81 (119)
Q Consensus         2 vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~l~~~V~~   81 (119)
                      ++.|||+.+.|..+.+.+.++++++||+..++..+++|...||..||+|+..++.+.+.+++|++++|++++.+++++++
T Consensus       467 ~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~  546 (658)
T 4bby_A          467 TLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKE  546 (658)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcc--ee-EeeecccCCC
Q psy7464          82 RLTRECTEGNVL--MM-LEQLPFGWPK  105 (119)
Q Consensus        82 al~~al~~~g~~--~~-~~~l~~~~~~  105 (119)
                      .+.+.+.+.++.  .+ .+|+.|.|+.
T Consensus       547 ~l~~~~~~~g~~~~~~~~~~~~h~~dg  573 (658)
T 4bby_A          547 RIRRECKEKGVQFPPLSTCRVTQTYDA  573 (658)
T ss_dssp             HHHHHHHHTTCSSCCEEEEEEEEECSS
T ss_pred             HHHHHHHhcCccccccceEEEEEEecc
Confidence            999999998874  34 6777777654

>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*

Probab=97.64  E-value=9.1e-05  Score=62.90  Aligned_cols=93  Identities=11%  Similarity=-0.024  Sum_probs=67.3

Q ss_pred             EEEEeCChHHHHhHHHHHHHHHHHcCCccC--CCcc--hhhhhhhhhhh----hhhhhh---hhhccCceeeeeccccc-
Q psy7464           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETSVPW-   69 (119)
Q Consensus         2 vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~--G~~~--g~~W~~~RF~~----PYLRd~---l~~~G~~~DT~ETA~~W-   69 (119)
                      ++.|+|+++.|+.+.+++.+||+++||..+  .+.+  .+.|.. |...    |+++..   .|..|-...++++++|| 
T Consensus       354 ~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~  432 (560)
T 1e8g_A          354 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVS  432 (560)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSS
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCC
Confidence            466999999999999999999999998533  2222  345554 7654    776653   23333335668999999 


Q ss_pred             -cchHHHHHHHHHHHHHHHHhCCccee-Eeee
Q psy7464          70 -DKTVLLCINVKKRLTRECTEGNVLMM-LEQL   99 (119)
Q Consensus        70 -s~v~~l~~~V~~al~~al~~~g~~~~-~~~l   99 (119)
                       ++++++++.+++.    +++.|.+.. |.|.
T Consensus       433 ~~~l~~~~~~~~~~----~~~~g~~~~~~gH~  460 (560)
T 1e8g_A          433 GEDAMMQYAVTKKR----CQEAGLDFIGTFTV  460 (560)
T ss_dssp             HHHHHHHHHHHHHH----HHHHTCCCCEEEEE
T ss_pred             HHHHHHHHHHHHHH----HHHcCCceEEEEEe
Confidence             9999999999654    456677766 7775

>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1

Probab=97.33  E-value=1.5e-05  Score=68.58  Aligned_cols=81  Identities=11%  Similarity=0.093  Sum_probs=59.7

Q ss_pred             EEEEeCChHHHHhHHHHHHHHHHHcCCccC--CCcchhhhhhhhhhhh----hhhhhhhh-ccCceeeeeccccccchHH
Q psy7464           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDSFETSVPWDKTVL   74 (119)
Q Consensus         2 vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~--G~~~g~~W~~~RF~~P----YLRd~l~~-~G~~~DT~ETA~~Ws~v~~   74 (119)
                      ++-|+|+....  ..+++.+++++++|...  .+..+++|...||..+    ++|+.+.+ .| .+.++|||+||++++.
T Consensus       393 lve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~~~l~~  469 (571)
T 1f0x_A          393 LLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRRNDTEW  469 (571)
T ss_dssp             EEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCTTCSCC
T ss_pred             EEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecHHHhHH
Confidence            45666666532  35666778888866443  4567888888999986    68887665 33 3689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy7464          75 LCINVKKRLTRE   86 (119)
Q Consensus        75 l~~~V~~al~~a   86 (119)
                      + +.+++.+.+.
T Consensus       470 ~-~~~~~~l~~~  480 (571)
T 1f0x_A          470 Y-EHLPPEIDSQ  480 (571)
T ss_dssp             S-CCCCHHHHTT
T ss_pred             H-HHHHHHHHhh
Confidence            9 8887777654

>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}

Probab=97.26  E-value=0.00056  Score=57.21  Aligned_cols=92  Identities=10%  Similarity=-0.040  Sum_probs=63.5

Q ss_pred             CEEEEeCChHHHHhHHHHHHHHHHHcCCccC---C---CcchhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchHH
Q psy7464           1 MALLVLGDPEDVKNNEDKIYSIAKRYGGIPA---G---ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL   74 (119)
Q Consensus         1 ~vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~---G---~~~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~   74 (119)
                      +++.|+|+.+.++.+.+++.++|.++|+..-   -   +...+-|. .|-..+.   .+...|. ..+.++++|||++++
T Consensus       291 llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~-~R~~~~~---~~~~~g~-~~~~Dv~vP~~~l~~  365 (476)
T 3pm9_A          291 VLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWK-LREEISP---AQKPEGG-SIKHDISVPVAAVPQ  365 (476)
T ss_dssp             EEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHH-HHHTHHH---HTGGGCC-EECCEEECCGGGHHH
T ss_pred             EEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHH-HHHHHHH---HHhhcCC-ceeEEEEeeHHHHHH
Confidence            3678899888888889999999999987431   1   12334564 3444321   2223454 688999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCccee-Eeee
Q psy7464          75 LCINVKKRLTRECTEGNVLMM-LEQL   99 (119)
Q Consensus        75 l~~~V~~al~~al~~~g~~~~-~~~l   99 (119)
                      +++.+++.+.+.+.  |.+.. |.|+
T Consensus       366 ~~~~~~~~~~~~~~--~~~~~~~gH~  389 (476)
T 3pm9_A          366 FIEQANAAVVALIP--GARPVPFGHL  389 (476)
T ss_dssp             HHHHHHHHHHHHST--TCEEEEEEEG
T ss_pred             HHHHHHHHHHHhcC--CCeEEEEEEe
Confidence            99999877766532  56666 7775

>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*

Probab=95.69  E-value=0.0012  Score=55.57  Aligned_cols=67  Identities=6%  Similarity=-0.132  Sum_probs=50.6

Q ss_pred             eC-ChHHHHhHHHHHHHHHHHcCCccCCCc----------chhhhhhhhhhhhhhhhhhhhccCceeeeeccccccchHH
Q psy7464           6 LG-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL   74 (119)
Q Consensus         6 EG-~~~~V~~~~~~~~~I~~~~GG~~~G~~----------~g~~W~~~RF~~PYLRd~l~~~G~~~DT~ETA~~Ws~v~~   74 (119)
                      +| +++.|+.+.+++.++++.+||....+.          ....|...++..|.+..     .    ++++++|||++++
T Consensus       324 ~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----~~Dv~VP~s~l~~  394 (524)
T 2exr_A          324 DSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----WLNLFVSKRDIGD  394 (524)
T ss_dssp             TTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----CEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----eeEEEECHHHHHH
Confidence            78 778899999999999999999755432          22347766665554432     1    3699999999999


Q ss_pred             HHHHHHH
Q psy7464          75 LCINVKK   81 (119)
Q Consensus        75 l~~~V~~   81 (119)
                      +.+.|.+
T Consensus       395 ~~~~v~~  401 (524)
T 2exr_A          395 FNRTVFK  401 (524)
T ss_dssp             HHHHCCC
T ss_pred             HHHHHHH
Confidence            9998866

>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*

Probab=95.46  E-value=0.034  Score=46.43  Aligned_cols=90  Identities=9%  Similarity=-0.161  Sum_probs=54.8

Q ss_pred             EEEEeCChHHHHhHHHHHHHHHHHcCCccCCCcchhhhhhhhhhhhhhhhhhh----------------hccCceeeeec
Q psy7464           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFAC----------------DYYFIGDSFET   65 (119)
Q Consensus         2 vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~G~~~g~~W~~~RF~~PYLRd~l~----------------~~G~~~DT~ET   65 (119)
                      ++.|+|++++|+.+.+++.++++++|+..+.   ...+.+ +-...++|..+.                ..+.+.++.-.
T Consensus       323 ~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  398 (520)
T 1wvf_A          323 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIV---TQEEAG-DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVS  398 (520)
T ss_dssp             EEEEEESHHHHHHHHHHHHHHHHHHTCCEEE---EHHHHT-TCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHcCCeEEE---ecccch-hhhHHHHHHHhhccCchhhhhccccccCCCceEEecccc
Confidence            4559999999999999999999999985432   111211 112222333222                01233344445


Q ss_pred             cccccchHHHHHHHHHHHHHHHHhCCccee-Eeee
Q psy7464          66 SVPWDKTVLLCINVKKRLTRECTEGNVLMM-LEQL   99 (119)
Q Consensus        66 A~~Ws~v~~l~~~V~~al~~al~~~g~~~~-~~~l   99 (119)
                      ..+|++++++++.+++.    +++.|.+.. +.|+
T Consensus       399 p~~~~~l~~~~~~~~~~----~~~~~~~~~~~gh~  429 (520)
T 1wvf_A          399 EARGSECKKQAAMAKRV----LHKYGLDYVAEFIV  429 (520)
T ss_dssp             ESCHHHHHHHHHHHHHH----HHHTTCCCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHH----HHHcCCCeeEeecc
Confidence            55668888888777544    456677666 7775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1wvfa1	279	Flavoprotein subunit of p-cresol methylhydroxylase	98.1
d1e8ga1	287	Vanillyl-alcohol oxidase {Fungus (Penicillium simp	97.57

>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

Probab=98.10  E-value=2.3e-06  Score=64.03  Aligned_cols=95  Identities=9%  Similarity=-0.077  Sum_probs=67.0

Q ss_pred             EEEEeCChHHHHhHHHHHHHHHHHcCCccC---CCcch-hhhhhh---hhhhhhhhhhhhh-----ccCceeeeeccccc
Q psy7464           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA---GESNG-RRGYML---TYIIAYIRDFACD-----YYFIGDSFETSVPW   69 (119)
Q Consensus         2 vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~---G~~~g-~~W~~~---RF~~PYLRd~l~~-----~G~~~DT~ETA~~W   69 (119)
                      ++.++|+++.|+.+.+++.+|++++||..+   ..... +.|...   .+..|+++...+.     .|.+..+-.++++|
T Consensus        82 ~~~l~G~~~~v~~~~~~i~~i~~~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~  161 (279)
T d1wvfa1          82 YAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARG  161 (279)
T ss_dssp             EEEEEESHHHHHHHHHHHHHHHHHHTCCEEEEHHHHTTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCH
T ss_pred             EEEeecCHHHHHHHHHHHHHHHHHCCCceEEeCCCHHHHHHHHHHHHhhhhhhhhhhhhHhhcCCCCCcceeeeeecCCH
Confidence            578899999999999999999999999654   11112 223222   2445666665443     35556666788999


Q ss_pred             cchHHHHHHHHHHHHHHHHhCCccee-Eeeec
Q psy7464          70 DKTVLLCINVKKRLTRECTEGNVLMM-LEQLP  100 (119)
Q Consensus        70 s~v~~l~~~V~~al~~al~~~g~~~~-~~~l~  100 (119)
                      |+++++++.+++    .+++.|.+.. +.|+.
T Consensus       162 s~l~~~~~~~~~----~~~~~g~~~~~~~H~g  189 (279)
T d1wvfa1         162 SECKKQAAMAKR----VLHKYGLDYVAEFIVA  189 (279)
T ss_dssp             HHHHHHHHHHHH----HHHHTTCCCCEEEEEC
T ss_pred             HHHHHHHHHHHH----HHHHhCCCeEEEEecC
Confidence            999998877644    4556788887 88865

>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Vanillyl-alcohol oxidase
species: Fungus (Penicillium simplicissimum) [TaxId: 69488]

Probab=97.57  E-value=9.7e-05  Score=54.72  Aligned_cols=95  Identities=5%  Similarity=-0.179  Sum_probs=65.6

Q ss_pred             EEEEeCChHHHHhHHHHHHHHHHHcCCccC----CCcchhh-hhhhhhh------hhhhhhhhhhccCceeeeecccccc
Q psy7464           2 ALLVLGDPEDVKNNEDKIYSIAKRYGGIPA----GESNGRR-GYMLTYI------IAYIRDFACDYYFIGDSFETSVPWD   70 (119)
Q Consensus         2 vlgfEG~~~~V~~~~~~~~~I~~~~GG~~~----G~~~g~~-W~~~RF~------~PYLRd~l~~~G~~~DT~ETA~~Ws   70 (119)
                      .++++|+++.|+.+.+++.++++++||..+    .....+. |...+..      .++......+.|...++.+++++++
T Consensus        81 ~~~l~G~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  160 (287)
T d1e8ga1          81 YGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSG  160 (287)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHHHHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSSH
T ss_pred             eeecccCHHHHHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHHHHHHhHhhhhhhhhhHHhhcCCCCeeeeeceeccCh
Confidence            578899999999999999999999999643    1122223 3333321      2344444556677888889999986


Q ss_pred             c-hHHHHHHHHHHHHHHHHhCCccee-Eeeec
Q psy7464          71 K-TVLLCINVKKRLTRECTEGNVLMM-LEQLP  100 (119)
Q Consensus        71 ~-v~~l~~~V~~al~~al~~~g~~~~-~~~l~  100 (119)
                      + ++.+++.    +++.+.+.|.... +.|+.
T Consensus       161 ~~l~~~~~~----~~~~~~~~g~~~~~~~H~g  188 (287)
T d1e8ga1         161 EDAMMQYAV----TKKRCQEAGLDFIGTFTVG  188 (287)
T ss_dssp             HHHHHHHHH----HHHHHHHHTCCCCEEEEEC
T ss_pred             HHHHHHHHH----HHHHHHHcCCCeEEEEEEc
Confidence            4 6665554    4566667788877 88864